BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007998
         (582 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/581 (69%), Positives = 480/581 (82%), Gaps = 5/581 (0%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           ++L++ L KC++   +S  H KQL AHL TTGQF+  + P RSK++E YALS L  L++A
Sbjct: 3   SSLDSFLSKCTT---LSLPHTKQLHAHLFTTGQFRLPISPARSKLLELYALS-LGNLSFA 58

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
              F QI  PSTND+NA++RG   S  PTNA  WY+ M+  S + DALTCSF LKACARV
Sbjct: 59  ILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARV 118

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
           LA  E++QIH+H++R GF+ADALLGTTLLDVYAKVGEI SA+KVFDEM  RDIASWNALI
Sbjct: 119 LARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALI 178

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           +G AQG+  +EA+ LFKRM+++G FKPNE++VLGAL+AC  LG +KEG+KIH YI+ ER 
Sbjct: 179 SGFAQGSKPTEALSLFKRMEIDG-FKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERF 237

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           DMN  VCN VIDMYAKCG +DKA+ VF+++ CRK +VTWNTM+MAFA+HG+G +ALELFE
Sbjct: 238 DMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFE 297

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           +M ++GV PDDVSYLA LCACNH GLV++G RLFNSM NCGVKPN+KHYGSVVDLLGRAG
Sbjct: 298 KMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAG 357

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           RL EA DIV S+    D+VLWQTLLGA + + +VE+AE  SRKLVEMGSN+CGDFVLLSN
Sbjct: 358 RLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSN 417

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YAA ERW DVGRVR+AMKNRDVKKVPG SYIE  GVIHKF+ +DKSH  WREIY KLDE
Sbjct: 418 VYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDE 477

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           I F++KEYGY A TS VLHDIGEE+KEN L +HSEKLAVAFGLISTSE T IQV KNLRI
Sbjct: 478 IRFRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRI 537

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH VIKLISK+Y+REIIVRDRVRFHRFK+G CSC+DYW
Sbjct: 538 CGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/584 (66%), Positives = 459/584 (78%), Gaps = 10/584 (1%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
           MA  N LLQKCSS        IKQLQA+L   G F       R+K++E  A+S   +L+Y
Sbjct: 1   MAYFNLLLQKCSSFS-----QIKQLQANLIINGDFH--FSSSRTKLLELCAISSFGDLSY 53

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML--RGSHRSDALTCSFALKAC 118
           A  +FR I  PSTND+NAV+RG A SS P NAV WYR M    G HR DALTCSFALKAC
Sbjct: 54  ALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKAC 113

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           AR LA  E +Q+HS +LR GF AD LL TTLLD YAK+G++  A+K+FDEM   DIASWN
Sbjct: 114 ARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWN 173

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ALIAG AQG+  ++A+  FKRMK++G  +PN VTV GAL AC  LGA KEG+ +H+YI E
Sbjct: 174 ALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVE 233

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           E+L+ NV VCN VIDMYAKCG +DKA+ VF+N++C KSL+TWNTM+MAFA+HGDG +AL+
Sbjct: 234 EKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALD 293

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LFE++GR+G+ PD VSYLA LCACNHAGLV+DG++LFNSM   G++PN+KHYGS+VDLLG
Sbjct: 294 LFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLG 353

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAGRL+EA DIV S+    +MVLWQTLLGAC+ YGDVEMAE+ASRKLVEMG  +CGDFVL
Sbjct: 354 RAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVL 412

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YAA +RWDDVGRVR AM+ RDVKK PGFSYIE+ G ++KF   D+SH   REIY K
Sbjct: 413 LSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAK 472

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           LDEI  +IK YGY+A TS VLHDIG+E+KENALCYHSEKLAVAFGL  T E T IQV KN
Sbjct: 473 LDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKN 532

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRIC DCH VIKLISK+Y REIIVRDR RFHRFK+G CSCKDYW
Sbjct: 533 LRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/584 (66%), Positives = 458/584 (78%), Gaps = 10/584 (1%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
           MA  N LLQKCSS        IKQLQA+L   G F       R+K++E  A+S   +L+Y
Sbjct: 1   MAYFNLLLQKCSSFS-----QIKQLQANLIINGDFH--FSSSRTKLLELCAISSFGDLSY 53

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML--RGSHRSDALTCSFALKAC 118
           A  +FR I  PSTND+NAV+RG A SS P NAV WYR M    G HR DALTCSFALKAC
Sbjct: 54  ALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKAC 113

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           AR LA  E +Q+HS +LR GF AD LL TTLLD YAK+G++  A+K+FDEM   DIASWN
Sbjct: 114 ARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWN 173

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ALIAG AQG+  ++A+  FKRMK++G  +PN VTV GAL AC  LGA KEG+ +H+YI E
Sbjct: 174 ALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVE 233

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           E+LD NV VCN VIDMYAKCG +DKA+ VF+N++C KSL+TWNTM+MAFA+HGDG +AL+
Sbjct: 234 EKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALD 293

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LFE++GR+G+ PD VSYLA LCACNHAGLV+DG++LFNSM   G++PN+KHYGS+VDLLG
Sbjct: 294 LFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLG 353

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAGRL+EA DIV S+    +MVLWQTLLGAC+ YGDVEMAE+ASRKLVEMG  +CG FVL
Sbjct: 354 RAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGXFVL 412

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YAA +RWDDVGRVR AM+ RDVKK PGFSYIE+ G ++KF   D+SH   REIY K
Sbjct: 413 LSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAK 472

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           LDEI  +IK YGY+A TS VLHDIG+E+KENALCYHSEKLAVAFGL  T E T IQV KN
Sbjct: 473 LDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKN 532

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRIC DCH VIKLISK+Y REIIVRDR RFHRFK+G CSCKDYW
Sbjct: 533 LRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/583 (66%), Positives = 465/583 (79%), Gaps = 11/583 (1%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE-LA 59
           MA +++++QKC++       HIKQ+QAHL TTGQF  ++ P R++++E  ALSP    L 
Sbjct: 1   MAFMDSIIQKCTTLS-----HIKQVQAHLLTTGQFNLRISPSRTRLLEHCALSPSPAYLP 55

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           YA  + R I  PSTNDFNA+LRGLA    PT+A+ +   +L      DALT SF+L A A
Sbjct: 56  YAAHIHRHIPHPSTNDFNALLRGLARGPHPTHALTFLSTILH----PDALTFSFSLIASA 111

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           R LAL ET QIHSH+LR G  AD LLGTTL+D YAK G++ SA++VFDE+ +RD+A+WNA
Sbjct: 112 RALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNA 171

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           LIAGLAQG+ +SEA+ LF RM+ EG  K NE++VLGALAAC  LGA + G+ +H  +R+ 
Sbjct: 172 LIAGLAQGSKSSEALALFNRMRAEGE-KINEISVLGALAACSQLGALRAGEGVHACVRKM 230

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            LD+NV VCNAVIDMYAKCG  DK F VF  + C KS+VTWNTM+MAFA+HGDG RALEL
Sbjct: 231 DLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALEL 290

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           FE+MG+  V+ D V+YLA LCACNHAGLV++GVRLF+ M   GV  N+KHYGSVVDLLGR
Sbjct: 291 FEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGR 350

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGRL EA  I+ S+ +  D+VLWQ+LLGAC+ YG+VEMAE+ASRKLVEMGSN+CGDFVLL
Sbjct: 351 AGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLL 410

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YAA ERW+DVGRVR+AMK+RDV+KVPGFSYIEV GVIHKF   D+SH  WREIY KL
Sbjct: 411 SNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKL 470

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           DEI F+IK +GY A TS VLHDIGEE+KENALC+HSEKLAVAFGLISTSE T I+V KNL
Sbjct: 471 DEIRFRIKAFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGLISTSEGTPIRVNKNL 530

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RIC DCH VIKLISK+Y++EIIVRDR RFHRFKDG+CSC+DYW
Sbjct: 531 RICGDCHVVIKLISKIYDQEIIVRDRARFHRFKDGSCSCRDYW 573


>gi|334183024|ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g34160
 gi|332193557|gb|AEE31678.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/589 (60%), Positives = 439/589 (74%), Gaps = 23/589 (3%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           +  ++QKC     VS   IKQLQ+H  T G FQS    +RS+++E  A+SP  +L++A  
Sbjct: 6   METMIQKC-----VSFSQIKQLQSHFLTAGHFQSSF--LRSRLLERCAISPFGDLSFAVQ 58

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH------RSDALTCSFALKA 117
           +FR I  P TND+NA++RG A SS P+ A  WYR ML+ S       R DALTCSF LKA
Sbjct: 59  IFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKA 118

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CAR L      Q+H  + R G  AD+LL TTLLD Y+K G+++SA K+FDEM VRD+ASW
Sbjct: 119 CARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASW 178

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI-HEYI 236
           NALIAGL  GN ASEA++L+KRM+ EG+ + +EVTV+ AL AC HLG  KEG+ I H Y 
Sbjct: 179 NALIAGLVSGNRASEAMELYKRMETEGI-RRSEVTVVAALGACSHLGDVKEGENIFHGYS 237

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +     NV+V NA IDMY+KCG +DKA++VF+    +KS+VTWNTM+  FAVHG+  RA
Sbjct: 238 ND-----NVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRA 292

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           LE+F+++   G+KPDDVSYLAAL AC HAGLV+ G+ +FN+MA  GV+ NMKHYG VVDL
Sbjct: 293 LEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNMKHYGCVVDL 352

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L RAGRL+EA DI+ S+SM  D VLWQ+LLGA ++Y DVEMAEIASR++ EMG NN GDF
Sbjct: 353 LSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDF 412

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSN+YAA  RW DVGRVR  M+++ VKK+PG SYIE  G IH+F+ SDKSH +WREIY
Sbjct: 413 VLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIY 472

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI---STSEATSI 533
           EK+DEI FKI+E GY A T  VLHDIGEEEKENALCYHSEKLAVA+GL+      E + +
Sbjct: 473 EKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPV 532

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +V  NLRIC DCH V K ISK+Y REIIVRDRVRFHRFKDG+CSC+D+W
Sbjct: 533 RVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581


>gi|297846398|ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336922|gb|EFH67339.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 562

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/528 (61%), Positives = 402/528 (76%), Gaps = 14/528 (2%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           +  ++Q C     V+   IKQLQ+H  T G FQS    +RS+++E  A+SP  +L++A  
Sbjct: 6   METMIQNC-----VTFSQIKQLQSHFLTAGHFQSSF--LRSRLLERCAISPFGDLSFAVK 58

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-----RSDALTCSFALKAC 118
           +FR I  P TND+NA++RG A SS P+ A  WYR ML+ S      R DALTCSF LKAC
Sbjct: 59  IFRHIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQRSSSSALCRVDALTCSFTLKAC 118

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           AR L     +QIH  + R GF ADALL TTLLD Y+K G+++SA K+FDEM VRD+ASWN
Sbjct: 119 ARALCSSAMVQIHCQISRRGFSADALLCTTLLDAYSKNGDLISALKLFDEMSVRDVASWN 178

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI-HEYIR 237
           ALIAGL  GN ASEA++L+KRM+MEG+ + +EVTV+ AL AC HLG  KEG+KI H YI+
Sbjct: 179 ALIAGLVAGNRASEALELYKRMEMEGI-RRSEVTVVAALGACSHLGDVKEGEKILHGYIK 237

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +E+LD NV+V NAVIDMY+KCG +DKAF+VF+    +KS+VTWNTM+  F+VHG+  RAL
Sbjct: 238 DEKLDHNVIVSNAVIDMYSKCGFVDKAFQVFEQFTGKKSVVTWNTMITGFSVHGEAHRAL 297

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           E+FE++   G+KPDDVSYLAAL AC H GLV+ G+ +FN+MA  GV+PNMKHYG VVDLL
Sbjct: 298 EIFEKLEHNGIKPDDVSYLAALTACRHTGLVEYGISIFNNMACNGVEPNMKHYGCVVDLL 357

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
            RAGRL+EA DI+ S+SM  D VLWQ+LLGA +++ +VEMAEIASRK+ EMG NN GDFV
Sbjct: 358 SRAGRLREAHDIICSMSMVPDPVLWQSLLGASEIHNNVEMAEIASRKIKEMGVNNDGDFV 417

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YAA  RW DVG VR  M+++ VKKVPG SYIE  G IH+F  SDKSH +WREIYE
Sbjct: 418 LLSNVYAAQGRWKDVGLVRDDMESKQVKKVPGISYIEAKGTIHQFHNSDKSHEQWREIYE 477

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
           K+DEI FKI+E GY A T  VLHDIGEEEKENALCYHSEKLAVA+GL+
Sbjct: 478 KIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLM 525


>gi|10086462|gb|AAG12522.1|AC015446_3 Hypothetical Protein [Arabidopsis thaliana]
          Length = 539

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 317/529 (59%), Positives = 394/529 (74%), Gaps = 20/529 (3%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           +  ++QKC     VS   IKQLQ+H  T G FQS    +RS+++E  A+SP  +L++A  
Sbjct: 6   METMIQKC-----VSFSQIKQLQSHFLTAGHFQSSF--LRSRLLERCAISPFGDLSFAVQ 58

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH------RSDALTCSFALKA 117
           +FR I  P TND+NA++RG A SS P+ A  WYR ML+ S       R DALTCSF LKA
Sbjct: 59  IFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKA 118

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CAR L      Q+H  + R G  AD+LL TTLLD Y+K G+++SA K+FDEM VRD+ASW
Sbjct: 119 CARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASW 178

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI-HEYI 236
           NALIAGL  GN ASEA++L+KRM+ EG+ + +EVTV+ AL AC HLG  KEG+ I H Y 
Sbjct: 179 NALIAGLVSGNRASEAMELYKRMETEGI-RRSEVTVVAALGACSHLGDVKEGENIFHGYS 237

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +     NV+V NA IDMY+KCG +DKA++VF+    +KS+VTWNTM+  FAVHG+  RA
Sbjct: 238 ND-----NVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRA 292

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           LE+F+++   G+KPDDVSYLAAL AC HAGLV+ G+ +FN+MA  GV+ NMKHYG VVDL
Sbjct: 293 LEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNMKHYGCVVDL 352

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L RAGRL+EA DI+ S+SM  D VLWQ+LLGA ++Y DVEMAEIASR++ EMG NN GDF
Sbjct: 353 LSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDF 412

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSN+YAA  RW DVGRVR  M+++ VKK+PG SYIE  G IH+F+ SDKSH +WREIY
Sbjct: 413 VLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIY 472

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
           EK+DEI FKI+E GY A T  VLHDIGEEEKENALCYHSEKLAVA+GL+
Sbjct: 473 EKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLM 521


>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
 gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
          Length = 596

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 316/577 (54%), Positives = 404/577 (70%), Gaps = 23/577 (3%)

Query: 21  HIKQLQAHLTTTGQFQSKLFP-VRSKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNA 78
           H KQ  A L   G   S  +P +R++ ++  AL P  + L +A  L R +  P+TNDFNA
Sbjct: 28  HYKQFHARLHALGTLHS--YPSLRARFLDRLALLPHADALPHALLLLRSLPYPATNDFNA 85

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRS-----DALTCSFALKACARVLALFETLQIHSH 133
            LRGLA S  P  ++L     L  +        DAL+ SFALKA AR    F TLQ+H+ 
Sbjct: 86  ALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAFATLQLHAI 145

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           ++R G  AD  L TTLLD YAK G++ SA++VFDEM VRD+A+WNAL+AGLAQG   + A
Sbjct: 146 LVRLGVAADVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWNALLAGLAQGTEPNLA 205

Query: 194 VDLFKRMKMEGVFK-------PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
           + LF+R+   G F+       PNEVTV+ AL+AC  LGA K+G   H++ R      NV 
Sbjct: 206 LVLFRRLA--GSFRELPPREEPNEVTVVAALSACAQLGALKDGLAAHDFARTIGAVGNVR 263

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           VCNA+IDMY+KCG L +A EVF +IK   ++LV++N  + A ++HG G  AL+LF++M  
Sbjct: 264 VCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGHGEDALKLFDEMP- 322

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           A ++PD+V+YLA L  CNHAGLVDDG R+F+SM    V PNMKHYG++VDLLGRAGRL E
Sbjct: 323 ARIEPDEVTYLAVLGGCNHAGLVDDGRRVFDSMR---VPPNMKHYGTIVDLLGRAGRLAE 379

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A D++  +    D+VLWQTLLGA +++G+V++AE+A+ KL ++GSN  GD+VLLSN+YA+
Sbjct: 380 AHDMIMHMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYAS 439

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
             RW DVGRVR  M++ DVKKVPGFSY E+ GV+HKF   DK H++WREIY  LDEI  K
Sbjct: 440 KSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHLRWREIYRALDEIGSK 499

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           I E GY   TS VLHDIGEEEK+ AL YHSEKLA+AFGLIST    +I+V KNLRIC DC
Sbjct: 500 ICELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRICGDC 559

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H V KLISK Y R II+RDR RFH+F+DG CSC+DYW
Sbjct: 560 HVVAKLISKAYGRVIIIRDRARFHQFEDGQCSCRDYW 596


>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  596 bits (1537), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 307/572 (53%), Positives = 400/572 (69%), Gaps = 16/572 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFP-VRSKIIEFYALSPLNELAYAHALF-RQINAPSTNDFNA 78
           H  Q  A L T+G   +   P +R++ ++  ALSP         L  R +  P+TND NA
Sbjct: 22  HYLQFHARLLTSGHLGAH--PGLRARFLDRLALSPHPAALPHALLLLRSLPTPATNDLNA 79

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGS--HRSDALTCSFALKACARVLALFETLQIHSHVLR 136
            LRGLA S  P  ++L     L  +   R DAL+ SFALKA AR      T+Q+H+ VLR
Sbjct: 80  ALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTVQLHALVLR 139

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G  AD  L TTLLD YAK G++ SA+KVFDEM VRD+A+WN+L+AGLAQG   + A+ L
Sbjct: 140 LGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALAL 199

Query: 197 FKRM-----KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           F R+     ++    +PNEVT++ AL+AC  +G  K+G  +HE+ +   LD NV VCN++
Sbjct: 200 FHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSL 259

Query: 252 IDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           IDMY+KCG L +A +VF +IK   ++LV++N  + A ++HG G  AL LF++M    ++P
Sbjct: 260 IDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEMP-TRIEP 318

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           D V+YLA LC CNH+GLVDDG+R+FNSM    V PNMKHYG++VDLLGRAGRL EA D V
Sbjct: 319 DGVTYLAVLCGCNHSGLVDDGLRVFNSMR---VAPNMKHYGTIVDLLGRAGRLTEAYDTV 375

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
            S+    D+VLWQTLLGA +++G VE+AE+A+ KL E+GSN  GD+VLLSN+YA+  RW 
Sbjct: 376 ISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWM 435

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
           DVGRVR  M++ DV+KVPGFSY E+ GV+HKF   DK H +W+EIY  L++I+ +I E G
Sbjct: 436 DVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELG 495

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
           Y   TS VLHDIGEEEK+ ALCYHSEKLA+AFGLI+T    +++V KNLRIC DCH V K
Sbjct: 496 YEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAK 555

Query: 551 LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LISK Y R I++RDR RFHRF+DG CSC+DYW
Sbjct: 556 LISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 587


>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 589

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 306/572 (53%), Positives = 400/572 (69%), Gaps = 16/572 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFP-VRSKIIEFYALSPLNELAYAHALF-RQINAPSTNDFNA 78
           H  Q  A L T+G   +   P +R++ ++  ALSP         L  R +  P+TND NA
Sbjct: 24  HYLQFHARLLTSGHLGAH--PGLRARFLDRLALSPHPAALPHALLLLRSLPTPATNDLNA 81

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGS--HRSDALTCSFALKACARVLALFETLQIHSHVLR 136
            LRGLA S  P  ++L     L  +   R DAL+ SFALKA AR      T+Q+H+ VLR
Sbjct: 82  ALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTVQLHALVLR 141

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G  AD  L TTLLD YAK G++ SA+KVFDEM VRD+A+WN+L+AGLAQG   + A+ L
Sbjct: 142 LGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALAL 201

Query: 197 FKRM-----KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           F R+     ++    +PNEVT++  L+AC  +G  K+G  +HE+ ++  LD NV VCN++
Sbjct: 202 FHRLANSFQELPSREEPNEVTIVAVLSACAQIGLLKDGMYVHEFAKKFGLDRNVRVCNSL 261

Query: 252 IDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           IDMY+KCG L +A +VF +IK   ++LV++N  + A ++HG G  AL LF++M    ++P
Sbjct: 262 IDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEMP-TRIEP 320

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           D V+YLA LC CNH+GLVDDG+R+FNSM    V PNMKHYG++VDLLGRAGRL EA D V
Sbjct: 321 DGVTYLAVLCGCNHSGLVDDGLRVFNSMR---VAPNMKHYGTIVDLLGRAGRLTEAYDTV 377

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
            S+    D+VLWQTLLGA +++G VE+AE+A+ KL E+GSN  GD+VLLSN+YA+  RW 
Sbjct: 378 ISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWM 437

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
           DVGRVR  M++ DV+KVPGFSY E+ GV+HKF   DK H +W+EIY  L++I+ +I E G
Sbjct: 438 DVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELG 497

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
           Y   TS VLHDIGEEEK+ ALCYHSEKLA+AFGLI+T    +++V KNLRIC DCH V K
Sbjct: 498 YEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAK 557

Query: 551 LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LISK Y R I++RDR RFHRF+DG CSC+DYW
Sbjct: 558 LISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 589


>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
          Length = 580

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 294/525 (56%), Positives = 380/525 (72%), Gaps = 12/525 (2%)

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS--HRSDALTCSFALKACARVLA 123
           R +  P+TND NA LRGLA S  P  ++L     L  +   R DAL+ SFALKA AR   
Sbjct: 60  RSLPTPATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSD 119

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
              T+Q+H+ VLR G  AD  L TTLLD YAK G++ SA+KVFDEM VRD+A+WN+L+AG
Sbjct: 120 AHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAG 179

Query: 184 LAQGNLASEAVDLFKRM-----KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           LAQG   + A+ LF R+     ++    +PNEVT++ AL+AC  +G  K+G  +HE+ + 
Sbjct: 180 LAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKR 239

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRAL 297
             LD NV VCN++IDMY+KCG L +A +VF +IK   ++LV++N  + A ++HG G  AL
Sbjct: 240 FGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDAL 299

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
            LF++M    ++PD V+YLA LC CNH+GLVDDG+R+FNSM    V PNMKHYG++VDLL
Sbjct: 300 RLFDEMP-TRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR---VAPNMKHYGTIVDLL 355

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           GRAGRL EA D V S+    D+VLWQTLLGA +++G VE+AE+A+ KL E+GSN  GD+V
Sbjct: 356 GRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYV 415

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YA+  RW DVGRVR  M++ DV+KVPGFSY E+ GV+HKF   DK H +W+EIY 
Sbjct: 416 LLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYR 475

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            L++I+ +I E GY   TS VLHDIGEEEK+ ALCYHSEKLA+AFGLI+T    +++V K
Sbjct: 476 ALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIK 535

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLRIC DCH V KLISK Y R I++RDR RFHRF+DG CSC+DYW
Sbjct: 536 NLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 580


>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 794

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 305/570 (53%), Positives = 398/570 (69%), Gaps = 14/570 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF-RQINAPSTNDFNAV 79
           H  Q  A L T+G   +    +R++ ++  ALSP         L  R +  P+TND NA 
Sbjct: 22  HYLQFHARLLTSGHLGAHP-GLRARFLDRLALSPHPAALPHALLLLRSLPTPATNDLNAA 80

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKACARVLALFETLQIHSHVLRH 137
           LRGLA S  P  ++L     L  +   R DAL+ SFALKA AR      T+Q+H+ VLR 
Sbjct: 81  LRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTVQLHALVLRL 140

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           G  AD  L TTLLD YAK G++ SA+KVFDEM VRD+A+WN+L+AGLAQG   + A+ LF
Sbjct: 141 GVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALF 200

Query: 198 KRM-----KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
            R+     ++    +PNEVT++ AL+AC  +G  K+G  +HE+ +   LD NV VCN++I
Sbjct: 201 HRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLI 260

Query: 253 DMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           DMY+KCG L +A +VF +IK   ++LV++N  + A ++HG G  AL LF++M    ++PD
Sbjct: 261 DMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEMP-TRIEPD 319

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
            V+YLA LC CNH+GLVDDG+R+FNSM    V PNMKHYG++VDLLGRAGRL EA D V 
Sbjct: 320 GVTYLAVLCGCNHSGLVDDGLRVFNSMR---VAPNMKHYGTIVDLLGRAGRLTEAYDTVI 376

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDD 431
           S+    D+VLWQTLLGA +++G VE+AE+A+ KL E+GSN  GD+VLLSN+YA+  RW D
Sbjct: 377 SMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMD 436

Query: 432 VGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGY 491
           VGRVR  M++ DV+KVPGFSY E+ GV+HKF   DK H +W+EIY  L++I+ +I E GY
Sbjct: 437 VGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGY 496

Query: 492 AAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKL 551
              TS VLHDIGEEEK+ ALCYHSEKLA+AFGLI+T    +++V KNLRIC DCH V KL
Sbjct: 497 EPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKL 556

Query: 552 ISKVYNREIIVRDRVRFHRFKDGACSCKDY 581
           ISK Y R I++RDR RFHRF+DG CSC+DY
Sbjct: 557 ISKAYGRVIVIRDRARFHRFEDGQCSCRDY 586


>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
          Length = 630

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 310/577 (53%), Positives = 399/577 (69%), Gaps = 23/577 (3%)

Query: 21  HIKQLQAHLTTTGQFQSKLFP-VRSKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNA 78
           H KQ  A L   G   S  +P +R++ ++  AL P  + L +A  L R + +P+TNDFNA
Sbjct: 62  HYKQFHARLHALGTLHS--YPSLRARFLDRLALLPHADALPHALLLLRSLPSPATNDFNA 119

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRS-----DALTCSFALKACARVLALFETLQIHSH 133
            LRGLA S  P  ++L     L  +        DAL+ SFALKA AR    F TLQ+H+ 
Sbjct: 120 ALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAFATLQLHAT 179

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           + R G  AD  L TTLLD YAK G++ SA+KVFDEM VRD+A+WNAL+AGLAQG   + A
Sbjct: 180 LFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLA 239

Query: 194 VDLFKRMKMEGVFK-------PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
           +      ++ G F+       PN VTV+ AL+AC  LG  K+G  +HE+ R      NV 
Sbjct: 240 L--LLFRRLAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVC 297

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           V NA+IDMY+KCG L +A EVF +IK   ++LV++N  + A ++HG G  AL+LF++M  
Sbjct: 298 VGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMP- 356

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           A ++PD+++YLA +  CNHAGLVDDG R+F+SM    V PNMKHYG++VDLLGRAGRL E
Sbjct: 357 ARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR---VPPNMKHYGTIVDLLGRAGRLAE 413

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A D++ S+    D+VLWQTLLGA +++G+V++AE+A+ KL ++GSN  GD+VLLSN+YA+
Sbjct: 414 AYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYAS 473

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
             RW DVGRVR  M++ DVKKVPGFSY E+ GV+HKF   DK H++WREIY  LDEI  +
Sbjct: 474 KSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRWREIYRALDEIGSR 533

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           I   GY   TS VLHDIGEEEK+ AL YHSEKLA+AFGLIST    +I+V KNLR C DC
Sbjct: 534 ICALGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRTCGDC 593

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H V KLISK YNR II+RDR RFHRF+DG CSC+DYW
Sbjct: 594 HVVAKLISKAYNRVIIIRDRARFHRFEDGHCSCRDYW 630


>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
 gi|224028917|gb|ACN33534.1| unknown [Zea mays]
          Length = 596

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 310/577 (53%), Positives = 399/577 (69%), Gaps = 23/577 (3%)

Query: 21  HIKQLQAHLTTTGQFQSKLFP-VRSKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNA 78
           H KQ  A L   G   S  +P +R++ ++  AL P  + L +A  L R + +P+TNDFNA
Sbjct: 28  HYKQFHARLHALGTLHS--YPSLRARFLDRLALLPHADALPHALLLLRSLPSPATNDFNA 85

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRS-----DALTCSFALKACARVLALFETLQIHSH 133
            LRGLA S  P  ++L     L  +        DAL+ SFALKA AR    F TLQ+H+ 
Sbjct: 86  ALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAFATLQLHAT 145

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           + R G  AD  L TTLLD YAK G++ SA+KVFDEM VRD+A+WNAL+AGLAQG   + A
Sbjct: 146 LFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLA 205

Query: 194 VDLFKRMKMEGVFK-------PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
           +      ++ G F+       PN VTV+ AL+AC  LG  K+G  +HE+ R      NV 
Sbjct: 206 L--LLFRRLAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVC 263

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           V NA+IDMY+KCG L +A EVF +IK   ++LV++N  + A ++HG G  AL+LF++M  
Sbjct: 264 VGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMP- 322

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           A ++PD+++YLA +  CNHAGLVDDG R+F+SM    V PNMKHYG++VDLLGRAGRL E
Sbjct: 323 ARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR---VPPNMKHYGTIVDLLGRAGRLAE 379

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A D++ S+    D+VLWQTLLGA +++G+V++AE+A+ KL ++GSN  GD+VLLSN+YA+
Sbjct: 380 AYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYAS 439

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
             RW DVGRVR  M++ DVKKVPGFSY E+ GV+HKF   DK H++WREIY  LDEI  +
Sbjct: 440 KSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRWREIYRALDEIGSR 499

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           I   GY   TS VLHDIGEEEK+ AL YHSEKLA+AFGLIST    +I+V KNLR C DC
Sbjct: 500 ICALGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRTCGDC 559

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H V KLISK YNR II+RDR RFHRF+DG CSC+DYW
Sbjct: 560 HVVAKLISKAYNRVIIIRDRARFHRFEDGHCSCRDYW 596


>gi|326532850|dbj|BAJ89270.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 295/522 (56%), Positives = 374/522 (71%), Gaps = 15/522 (2%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-----DALTCSFALKACARVLALFE 126
           +TNDFNA LRGLA S  P  ++L     L  S        DAL+ SFALKA AR      
Sbjct: 63  ATNDFNAALRGLAASPHPARSLLLLAGRLLPSPSPPRPRLDALSLSFALKASARCSDGPA 122

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
           TLQ+H+ VLR G  AD  L TTLLD YAK  E+ SA+KVFDEM VRD+ASWNAL+AGLAQ
Sbjct: 123 TLQLHALVLRLGCTADVRLITTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQ 182

Query: 187 GNLASEAVDLFKRM-----KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           G   S A+ LF R+     ++     PN VT++ AL+AC  +G+ ++G  +HE+ R+  +
Sbjct: 183 GTEPSLALALFHRLVRSFQELPPREAPNVVTIIAALSACAQIGSLQDGLCVHEFARKIGV 242

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELF 300
             NV VCNA+IDMY+KCG L +A EVF +IK   ++LV++NT + A ++HG G  AL+LF
Sbjct: 243 GGNVRVCNALIDMYSKCGSLARALEVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLF 302

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
           ++M    ++PD+V+Y+A LC CNHAGLVD+G+R+F+ M    V PN+KHYG+VVDLLGRA
Sbjct: 303 DEMPTC-IEPDEVTYIAVLCGCNHAGLVDEGLRVFHGMR---VPPNVKHYGTVVDLLGRA 358

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           GRL EA D +KS+    D+VLWQTLLGA + +GDVE+AE+A+ KL E+GSN  GD+VLLS
Sbjct: 359 GRLAEAYDTIKSMPFPADIVLWQTLLGASKTHGDVELAEVAATKLTELGSNVDGDYVLLS 418

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA+  RW DVGRVR  M++ DV+KVPGFSY E+ GV+HKF   DK H + +EIY  L 
Sbjct: 419 NVYASKARWADVGRVRDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRLQEIYRALG 478

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           EIM +I E GY   TS VLHDIGEEEK+ AL YHSEKLA+AFGLI+T    +++V KN+R
Sbjct: 479 EIMSRIGELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKNIR 538

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IC DCH V KLISK Y R II+RDR RFHRF+DG CSC DYW
Sbjct: 539 ICGDCHVVAKLISKAYGRAIIIRDRARFHRFEDGQCSCSDYW 580


>gi|357124741|ref|XP_003564056.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Brachypodium distachyon]
          Length = 594

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 310/576 (53%), Positives = 404/576 (70%), Gaps = 21/576 (3%)

Query: 21  HIKQLQAHLTTTGQFQSKLFP-VRSKIIEFYALSPLNELAYAHALF--RQINAPSTNDFN 77
           H KQ  A L ++      L P +R++ ++  ALS  +  A  HAL   R + +P+TNDFN
Sbjct: 26  HYKQFHARLLSSAVLH--LDPSLRARFLDRLALSD-HPAALPHALLFLRSLPSPATNDFN 82

Query: 78  AVLRGLAHSSKPTNAVLWYRQMLRGSHRS-----DALTCSFALKACARVLALFETLQIHS 132
           A LRGLA S  P  ++L     L  S        DAL+ SFALKA AR      TLQ+H+
Sbjct: 83  AALRGLAASPHPARSLLLLAGRLLPSPSPPPPRLDALSLSFALKASARCSDGTATLQLHA 142

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
            +LR G   D  L TTL+D YAK G++ SA+KVFDEM VRD+ASWNAL+AGLAQG   + 
Sbjct: 143 LLLRLGCTPDVRLITTLVDSYAKCGDLASARKVFDEMVVRDVASWNALLAGLAQGTEPTL 202

Query: 193 AVDLFKRM-----KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
           A+ LF R+     ++    +PNEVT++ AL+AC  +G+ ++G  +HE+ R+  ++ NV V
Sbjct: 203 ALALFHRLVGSFRELPPREEPNEVTIVAALSACAQIGSLQDGLYVHEFARKIGVNGNVRV 262

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           CNA+IDMY+KCG LD A EVF +IK   ++LV++NT + A ++HG G  AL LF++M   
Sbjct: 263 CNALIDMYSKCGSLDLALEVFHSIKREDRTLVSYNTAIQAVSMHGHGGDALRLFDEMP-T 321

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            ++PD+V+Y+A LC CNHAGLVDDG+R+F+SM    V PN+KHYG+VVDLLGRAGRL EA
Sbjct: 322 FIEPDEVTYIAVLCGCNHAGLVDDGLRVFHSMR---VLPNVKHYGAVVDLLGRAGRLAEA 378

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426
            D + S+    D+VLWQTLLGA + +GDVE+AE+A+ KL E+GSN  GD+VLLSN+YA+ 
Sbjct: 379 YDTIVSMPFPADIVLWQTLLGAAKTHGDVELAELAATKLDELGSNVDGDYVLLSNVYASK 438

Query: 427 ERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKI 486
            RW DV RVR  M++ DV+KVPGFSY E+ GV+HKF   DK H +W+EIY  L+EI+ +I
Sbjct: 439 ARWADVRRVRDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRWQEIYRALEEIVSRI 498

Query: 487 KEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCH 546
            E GY   TS VLHDIGEEEK+ AL YHSEKLA+AFGLI+T    +++V KNLR C DCH
Sbjct: 499 GELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKNLRTCGDCH 558

Query: 547 DVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            V KLISK Y R II+RDR RFH+F+DG CSCKDYW
Sbjct: 559 VVAKLISKAYGRVIIIRDRARFHQFEDGQCSCKDYW 594


>gi|222630733|gb|EEE62865.1| hypothetical protein OsJ_17668 [Oryza sativa Japonica Group]
          Length = 620

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/419 (57%), Positives = 313/419 (74%), Gaps = 10/419 (2%)

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRM-----KMEGVFKPNEVTVLGALAACGHL 223
           M VRD+A+WN+L+AGLAQG   + A+ LF R+     ++    +PNEVT++ AL+AC  +
Sbjct: 1   MTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQI 60

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNT 282
           G  K+G  +HE+ +   LD NV VCN++IDMY+KCG L +A +VF +IK   ++LV++N 
Sbjct: 61  GLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNA 120

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
            + A ++HG G  AL LF++M    ++PD V+YLA LC CNH+GLVDDG+R+FNSM    
Sbjct: 121 AIQAHSMHGHGGDALRLFDEMP-TRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR--- 176

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           V PNMKHYG++VDLLGRAGRL EA D V S+    D+VLWQTLLGA +++G VE+AE+A+
Sbjct: 177 VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAA 236

Query: 403 RKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKF 462
            KL E+GSN  GD+VLLSN+YA+  RW DVGRVR  M++ DV+KVPGFSY E+ GV+HKF
Sbjct: 237 NKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKF 296

Query: 463 FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
              DK H +W+EIY  L++I+ +I E GY   TS VLHDIGEEEK+ ALCYHSEKLA+AF
Sbjct: 297 INGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAF 356

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDY 581
           GLI+T    +++V KNLRIC DCH V KLISK Y R I++RDR RFHRF+DG CSC+DY
Sbjct: 357 GLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDY 415



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 13/224 (5%)

Query: 76  FNAVLRGLAHSSKPTNAV-LWYR-----QMLRGSHRSDALTCSFALKACARVLALFETLQ 129
           +N++L GLA  ++P  A+ L++R     Q L      + +T   AL ACA++  L + + 
Sbjct: 9   WNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMY 68

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD--IASWNALIAGLAQG 187
           +H    R G   +  +  +L+D+Y+K G +  A  VF  +   D  + S+NA I   +  
Sbjct: 69  VHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMH 128

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
               +A+ LF  M      +P+ VT L  L  C H G   +G ++   +   R+  N+  
Sbjct: 129 GHGGDALRLFDEMPTR--IEPDGVTYLAVLCGCNHSGLVDDGLRVFNSM---RVAPNMKH 183

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
              ++D+  + G L +A++   ++     +V W T++ A  +HG
Sbjct: 184 YGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHG 227


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/581 (43%), Positives = 373/581 (64%), Gaps = 14/581 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ALLQ C+S   +  IH     AH+  +G       P+ +K++ F A+S    LAYA  LF
Sbjct: 9   ALLQGCNSLKRLRKIH-----AHVIVSGLHHH--VPIANKLLNFCAISVSGSLAYAQLLF 61

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLAL 124
            Q+  P T  +N+++RG A SS P +A+++Y QM+  S    D  T SF LKAC R+ A 
Sbjct: 62  HQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAE 121

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
            +  ++H  V+R G+ AD ++ T L+  Y+ +G +  A++VFD+M  RD+ +WNA+I+  
Sbjct: 122 RKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCF 181

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           +Q  L  EA+  + +M+ E V   +  T++G +++C HLGA   G ++H + RE  LD +
Sbjct: 182 SQQGLHQEALQTYNQMRSENV-DIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQS 240

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + V NA+IDMYAKCG LD+A  +FD ++ RK + TWN+M++ + VHG G  A+  F+QM 
Sbjct: 241 LYVGNALIDMYAKCGSLDQAILIFDRMQ-RKDIFTWNSMIVGYGVHGRGSEAIYCFQQML 299

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRL 363
            A ++P+ V++L  LC C+H GLV +GV+ FN M++   +KP +KHYG +VDL GRAG+L
Sbjct: 300 EARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKL 359

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            +A +IV S S   D VLW+ LLG+C+++ +V + EIA  +L E+G+ + GD +LL+ +Y
Sbjct: 360 DKALEIV-SNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIY 418

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A  +    V R+RK +K++  K  PG+S+IE+G  +HKF   DKSH    E+YEKL E++
Sbjct: 419 AGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVI 478

Query: 484 FKIKEYGYAAGTSCVLHDI--GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
            +   +GY    S    D+    E  + +  YHSEKLA+AFGL  T++ T I++ KNLR+
Sbjct: 479 HQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRV 538

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CRDCH  IK +S  +NREIIVRDRVRFH FK G CSC DYW
Sbjct: 539 CRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/581 (43%), Positives = 373/581 (64%), Gaps = 14/581 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ALLQ C+S   +  IH     AH+  +G       P+ +K++ F A+S    LAYA  LF
Sbjct: 9   ALLQGCNSLKRLRKIH-----AHVIVSGLHHH--VPIANKLLNFCAISVSGSLAYAQLLF 61

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLAL 124
            Q+  P T  +N+++RG A SS P +A+++Y QM+  S    D  T SF LKAC R+ A 
Sbjct: 62  HQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAE 121

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
            +  ++H  V+R G+ AD ++ T L+  Y+ +G +  A++VFD+M  RD+ +WNA+I+  
Sbjct: 122 RKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCF 181

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           +Q  L  EA+  + +M+ E V   +  T++G +++C HLGA   G ++H + RE  LD +
Sbjct: 182 SQQGLHQEALQTYNQMRSENV-DVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQS 240

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + V NA+IDMYAKCG LD+A  +FD ++ RK + TWN+M++ + VHG G  A+  F+QM 
Sbjct: 241 LYVGNALIDMYAKCGSLDQAILIFDRMQ-RKDIFTWNSMIVGYGVHGRGSEAIYCFQQML 299

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRL 363
            A ++P+ V++L  LC C+H GLV +GV+ FN M++   +KP +KHYG +VDL GRAG+L
Sbjct: 300 EARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKL 359

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            +A +IV S S   D VLW+ LLG+C+++ +V + EIA  +L E+G+ + GD +LL+ +Y
Sbjct: 360 DKALEIV-SNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIY 418

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A  +    V R+RK +K++  K  PG+S+IE+G  +HKF   DKSH    E+YEKL E++
Sbjct: 419 AGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVI 478

Query: 484 FKIKEYGYAAGTSCVLHDI--GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
            +   +GY    S    D+    E  + +  YHSEKLA+AFGL  T++ T I++ KNLR+
Sbjct: 479 HQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRV 538

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CRDCH  IK +S  +NREIIVRDRVRFH FK G CSC DYW
Sbjct: 539 CRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/582 (41%), Positives = 358/582 (61%), Gaps = 10/582 (1%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
            L +L++ CS        H+ Q+ AH+  T   Q+    +  + +   ALSP  ++ Y+ 
Sbjct: 70  QLISLIKSCSKK-----THLLQIHAHIIRTSLIQNHFISL--QFLSRAALSPSRDMGYSS 122

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F QI  PS + +N ++R  + S  P      YR+M R     + L+ SF +K+C R+ 
Sbjct: 123 QVFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRIS 182

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           +L   LQIH+ +LR G  +D LL TTL+D+Y+   +   A KVFDE+   D  SWN LI+
Sbjct: 183 SLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLIS 242

Query: 183 GLAQGNLASEAVDLFKRMKMEG-VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
                    +A+ +F  M+     F+P++VT L  L AC +LGA + G+++H YI E   
Sbjct: 243 CCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGY 302

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           D  + +CN++I MY++CG L+KA+ +F  +   +++V+W+ M+  FA+HG G  A+E FE
Sbjct: 303 DGALNLCNSLITMYSRCGRLEKAYSIFKRMD-ERNVVSWSAMISGFAMHGYGREAIEAFE 361

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRA 360
           QM + GV PDD +    L AC+H GLVDDG+  F+ M+   G++PN+ HYG +VDLLGRA
Sbjct: 362 QMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRA 421

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L +A  ++ S+ +  D  LW+TLLGAC+++    + E     L+E+ +   GD+VLL 
Sbjct: 422 GLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLL 481

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+Y++   WD V  +RK MK + ++  PG S IE+ G +H+F   D  H +  EIYE LD
Sbjct: 482 NIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLD 541

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           EI  ++K  GY A  S  LH++G EEK N L YHSEKLA+AFG+++T   T+I+V KNLR
Sbjct: 542 EIGKQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLR 601

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IC DCH+  K++S  YNRE+++RDR RFH F++G CSC  YW
Sbjct: 602 ICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 241/572 (42%), Positives = 362/572 (63%), Gaps = 38/572 (6%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           SKI+ F AL     L YA  +F QI  P+T   N+++RG  + + P  A+L+Y+ M+   
Sbjct: 14  SKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQG 73

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
              D  T     K+C     L E  Q+H H  + GF +DA +  TL+++Y+  G +VSA+
Sbjct: 74  LDPDRFTFPSLFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSAR 130

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM----------------------- 200
           KVFD+M  + + SW  +I   AQ +L  EA+ LF+RM                       
Sbjct: 131 KVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYE 190

Query: 201 ---------KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
                    ++ GV K ++VT+   L AC HLGA + G  +H YI +E+++++V +  A+
Sbjct: 191 EALSLFNEMQLSGV-KGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTAL 249

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           +DMYAKCG ++ A  VF  +   K ++TW  +++  A+ G G +ALELF +M  + VKPD
Sbjct: 250 VDMYAKCGSIESAMRVFQEMP-EKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPD 308

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
            ++++  L AC+HAGLV++G+  FNSM N  G++P+++HYG +VD+LGRAGR+ EA D++
Sbjct: 309 AITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLI 368

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
           +++ M  D  +   LL AC+++G++ +AE A+++L+E+   N G +VLLSN+Y++ + W+
Sbjct: 369 QNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWE 428

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
              ++R+ M  R++KK PG S IEVGGV+H+F   D SH +  EIYE LD++M ++K  G
Sbjct: 429 AAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAG 488

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
           Y    S VL D+ E+EKEN L  HSEKLA+AFGL+ST+  T I+V KNLR+C DCH  +K
Sbjct: 489 YVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMK 548

Query: 551 LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            IS+VYNREIIVRDR RFH F  G+CSC+D+W
Sbjct: 549 FISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/593 (41%), Positives = 370/593 (62%), Gaps = 20/593 (3%)

Query: 1   MANLNA---LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE 57
           MAN  A   LLQ C+S   +  IH     AH+   G   +    +  K++ F A+S    
Sbjct: 20  MANARAILSLLQGCNSMRKLHKIH-----AHILINGYQHNP--SISEKLLNFCAVSVSGS 72

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTN--AVLWYRQMLRGSH-RSDALTCSFA 114
           LAYA  +F +I+ P T  +N+++RG + S  P    A+++Y  ML  SH R D  T SF 
Sbjct: 73  LAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFL 132

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           LKAC       +  ++H  ++R G+  D +L T L+  YA  G I +A KVF+EM  RD+
Sbjct: 133 LKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDL 192

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWN++I+   Q  L  EA+ ++ +M++  V   +  T++  L++C H+GA   G ++H 
Sbjct: 193 VSWNSMISCYCQTGLHEEALKMYDQMRISNV-GFDGFTLVSLLSSCAHVGALHMGVQMHR 251

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           +  E RL  N+ V NA+IDMYAKCG L  A  +F+++  ++ + TWN+M++ + VHG G 
Sbjct: 252 FAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMP-KRDVFTWNSMIVGYGVHGRGD 310

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSV 353
            A+  F  M  AGV+P+ +++L  LC C+H GLV +GV+ F+ M++   +KP +KHYG +
Sbjct: 311 EAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCM 370

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VDL GRAG+L+EA ++++S     D VLW+TLLG+C+++ +VE+ E+A R LV++GS   
Sbjct: 371 VDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGA 430

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
           GD VLLS +YA  +    V R+RK +++R +K  PG+S+IEVG  +H+F   DKSH   R
Sbjct: 431 GDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSR 490

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVL----HDIGEEEKENALCYHSEKLAVAFGLISTSE 529
           EIY KL+E++ +    GYA   S ++     +  E   E +  YHSEKLA+A+GL  T E
Sbjct: 491 EIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPE 550

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            TS+ + KNLR+CRDCH+  K +S  ++REIIVRDRVRFH FK G CSCK++W
Sbjct: 551 GTSLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/578 (42%), Positives = 366/578 (63%), Gaps = 9/578 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ALL  C+S    S    +Q+ A     G   +   P   K + F  LS  + ++YAH +F
Sbjct: 44  ALLLSCAS----SKFKFRQIHAFSIRHGVPLTN--PDMGKYLIFTLLSFCSPMSYAHQIF 97

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            QI  P+   +N ++RG A S  P  A+  YRQM       D  T  F LKA A+++ + 
Sbjct: 98  SQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVR 157

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E  ++HS  +R+GF +   +  TL+ +YA  G   SA K+F+ M  R++ +WN++I G A
Sbjct: 158 EGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYA 217

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
                +EA+ LF+ M + GV +P+  T++  L+AC  LGA   G + H Y+ +  LD N+
Sbjct: 218 LNGRPNEALTLFREMGLRGV-EPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNL 276

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
              NA++D+YAKCG + +A +VFD ++  KS+V+W ++++  AV+G G  ALELF+++ R
Sbjct: 277 HAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLIVGLAVNGFGKEALELFKELER 335

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQ 364
            G+ P +++++  L AC+H G+VD+G   F  M    G+ P ++HYG +VDLLGRAG ++
Sbjct: 336 KGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVK 395

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           +A + ++++ M  + V+W+TLLGAC ++G + + E+A  +L+++   + GD+VLLSNLYA
Sbjct: 396 QAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYA 455

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
           + +RW DV +VR+ M    VKK PG S +E+   +H+F   D+SH +  EIY KL EI  
Sbjct: 456 SEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITK 515

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
            +K  GY    S VL DI EEEKE AL YHSEK+A+AF LI+T+    I+V KNLR+C D
Sbjct: 516 LLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCAD 575

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH  IKLISKV++REI+VRDR RFH FKDG CSCKDYW
Sbjct: 576 CHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/593 (41%), Positives = 370/593 (62%), Gaps = 20/593 (3%)

Query: 1   MANLNA---LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE 57
           MAN  A   LLQ C+S   +  IH     AH+   G   +    +  K++ F A+S    
Sbjct: 2   MANARAILSLLQGCNSMRKLHKIH-----AHILINGYQHNP--SISEKLLNFCAVSVSGS 54

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTN--AVLWYRQMLRGSH-RSDALTCSFA 114
           LAYA  +F +I+ P T  +N+++RG + S  P    A+++Y  ML  SH R D  T SF 
Sbjct: 55  LAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFL 114

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           LKAC       +  ++H  ++R G+  D +L T L+  YA  G I +A KVF+EM  RD+
Sbjct: 115 LKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDL 174

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWN++I+   Q  L  EA+ ++ +M++  V   +  T++  L++C H+GA   G ++H 
Sbjct: 175 VSWNSMISCYCQTGLHEEALKMYDQMRISNV-GFDGFTLVSLLSSCAHVGALHMGVQMHR 233

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           +  E RL  N+ V NA+IDMYAKCG L  A  +F+++  ++ + TWN+M++ + VHG G 
Sbjct: 234 FAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMP-KRDVFTWNSMIVGYGVHGRGD 292

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSV 353
            A+  F  M  AGV+P+ +++L  LC C+H GLV +GV+ F+ M++   +KP +KHYG +
Sbjct: 293 EAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCM 352

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VDL GRAG+L+EA ++++S     D VLW+TLLG+C+++ +VE+ E+A R LV++GS   
Sbjct: 353 VDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGA 412

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
           GD VLLS +YA  +    V R+RK +++R +K  PG+S+IEVG  +H+F   DKSH   R
Sbjct: 413 GDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSR 472

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVL----HDIGEEEKENALCYHSEKLAVAFGLISTSE 529
           EIY KL+E++ +    GYA   S ++     +  E   E +  YHSEKLA+A+GL  T E
Sbjct: 473 EIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPE 532

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            TS+ + KNLR+CRDCH+  K +S  ++REIIVRDRVRFH FK G CSCK++W
Sbjct: 533 GTSLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/594 (41%), Positives = 354/594 (59%), Gaps = 37/594 (6%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           + Q+ A   TTG F      V S+I+ F ALSP   + YA  LF +I  P     N ++R
Sbjct: 51  LTQIHAQTITTGIFSDNF--VASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIR 108

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
             A S  P +AV++Y +M   S    D  T    LKAC+ + +L     IHSHV + G+ 
Sbjct: 109 AYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWS 168

Query: 141 ADALLGTTLLDVYA-------------------------------KVGEIVSAKKVFDEM 169
           ++  +   L+ +YA                               K G   SA+++F+ M
Sbjct: 169 SEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAM 228

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
             RD+ SW+ +I G  Q +   E + LF+ M  E + +PNE  ++ AL+AC HLGA ++G
Sbjct: 229 PDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKI-EPNESVLVNALSACAHLGAMEQG 287

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
             I  Y+  + + + V +  A+IDMY+KCG +++A EVF  +K  K+++ W+ M+   A+
Sbjct: 288 QWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMK-EKNVLAWSAMINGLAI 346

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMK 348
           +G G  AL LF QM   GVKP++V+++  L AC+H+ LVD+G   F+SM +  G+KPN  
Sbjct: 347 NGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAH 406

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
           H+  +VDL GRAG L +A  ++KS+    +  +W  LL AC+++GD E+ E   ++L+E+
Sbjct: 407 HHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLEL 466

Query: 409 GSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKS 468
             N+ G +VLLSN+YAA  RWD V  +R+ M+ R V K PG S+I++G  IH+F   D S
Sbjct: 467 DPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSS 526

Query: 469 HVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTS 528
           H +   IY KL E+  ++K  GY   T  VL D+ EEEKE ALC+HSEKLA+AFGLI T 
Sbjct: 527 HPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTD 586

Query: 529 EATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             T+I++ KNLR+C DCH   KLISK+YNREIIVRDR RFH F+DG+CSC D+W
Sbjct: 587 PGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/563 (41%), Positives = 372/563 (66%), Gaps = 4/563 (0%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           ++Q+ A L T     S +     KII F ALSP  ++ YA  LF QI  P+   +N+++R
Sbjct: 4   LRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIR 63

Query: 82  GLAHSSKPTN-AVLWYRQMLR-GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           G + S  P+   V+ +R+M+R G    +  T +F LKAC+ V AL E  Q+H++VL+ GF
Sbjct: 64  GCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGF 123

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
            +   + T L++ YAK  +IV A KVFDE+  R++ +W+ +I+G A+  L +EA+ LF+ 
Sbjct: 124 GSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRD 183

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+  GV  P+EVT++  ++AC   GA   G  +H YI ++ ++ ++ +  A+++MYAKCG
Sbjct: 184 MQKAGVV-PDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCG 242

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            +++A EVFD +   K    W++M++  A++G    ALE F +M  A VKP+ V+++  L
Sbjct: 243 CIERAKEVFDAMPV-KDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVL 301

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            AC H+GLV +G R ++SM   G+ P+M+ YG +VDLL RA  +++AC +V+++ +  + 
Sbjct: 302 SACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNP 361

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           V+W+TLL  C+   +++ +E+ +++L+E+  +N  +++LLSNLYA+  +W+ + +VRK M
Sbjct: 362 VIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKM 421

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           K   +K VPG S IEV G++H+F   D SH +  E+ E L +I  ++   G+  G S VL
Sbjct: 422 KGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVL 481

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           H++ +EEKENALC HSE+LA+A+GL+ T    +I++ KNLR+C DCH+V K+IS  Y RE
Sbjct: 482 HNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRRE 541

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           IIVRDRVRFH+F +G+CSC+D+W
Sbjct: 542 IIVRDRVRFHKFVNGSCSCRDFW 564


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/549 (42%), Positives = 353/549 (64%), Gaps = 10/549 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTN--AVLWYRQM 99
           +  K++ F A+S    LAYA  +F +I+ P T  +N+++RG + S  P    A+++Y  M
Sbjct: 432 ISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHM 491

Query: 100 LRGSH-RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           L  SH R D  T SF LKAC       +  ++H  ++R G+  D +L T L+  YA  G 
Sbjct: 492 LSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGL 551

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           I +A KVF+EM  RD+ SWN++I+   Q  L  EA+ ++ +M++  V   +  T++  L+
Sbjct: 552 IETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNV-GFDGFTLVSLLS 610

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           +C H+GA   G ++H +  E RL  N+ V NA+IDMYAKCG L  A  +F+++  ++ + 
Sbjct: 611 SCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMP-KRDVF 669

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           TWN+M++ + VHG G  A+  F  M  AGV+P+ +++L  LC C+H GLV +GV+ F+ M
Sbjct: 670 TWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMM 729

Query: 339 AN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
           ++   +KP +KHYG +VDL GRAG+L+EA ++++S     D VLW+TLLG+C+++ +VE+
Sbjct: 730 SSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEI 789

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
            E+A R LV++GS   GD VLLS +YA  +    V R+RK +++R +K  PG+S+IEVG 
Sbjct: 790 GEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGD 849

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL----HDIGEEEKENALCY 513
            +H+F   DKSH   REIY KL+E++ +    GYA   S ++     +  E   E +  Y
Sbjct: 850 QVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSY 909

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEKLA+A+GL  T E TS+ + KNLR+CRDCH+  K +SK ++REIIVRDRVRFH F+ 
Sbjct: 910 HSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRFHHFRG 969

Query: 574 GACSCKDYW 582
           G CSCK++W
Sbjct: 970 GHCSCKEFW 978


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/587 (41%), Positives = 359/587 (61%), Gaps = 13/587 (2%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
           + +++ L   C+S       H   L+ HL     F SKL       I F ALS   +L Y
Sbjct: 11  LISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKL-------ISFLALSHSGDLNY 63

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF Q+  P     N ++RG A S  P  AV  Y  M+      D  T  F L ACAR
Sbjct: 64  ARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACAR 123

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + A+    + H  VL++GF +D  +   L+  Y   G    A  VFDE  VRD+ +WN +
Sbjct: 124 LGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIM 183

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE-E 239
           I       L+ +A DL   M      +P+EVT++  + AC  LG  + G  +H Y +E +
Sbjct: 184 INAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELD 243

Query: 240 RLDMN--VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           + ++N  +V+  A++DMYAKCG +D A +VF  ++ R ++ TWN ++   A+HG G  A+
Sbjct: 244 KFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHGHGEDAI 302

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDL 356
            LF+QM    + PDDV+++A LCAC+HAGLVD+G+ +F +M N   ++P M+HYG VVDL
Sbjct: 303 SLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDL 362

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L RA ++ +A   ++++ +  + VLW TLLGAC+  G  ++AE   R+++E+  ++CG +
Sbjct: 363 LCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRY 422

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           V+LSNLYA   +WD   ++RK MKN+ ++K PG S+IE+ G+IH+F   D+SH++  +IY
Sbjct: 423 VMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIY 482

Query: 477 EKLDEIMFKIK-EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
             ++E+  ++  + G+  GT+ VL DI EEEKE++L  HSEKLA+A GLIST   + I++
Sbjct: 483 AMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRI 542

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH  +K+ SKVYNREI+ RDR RFH FK+G+CSC D+W
Sbjct: 543 VKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/565 (42%), Positives = 349/565 (61%), Gaps = 9/565 (1%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           +K++QAH+   G        + + I+ F A+S    L YA  LFR I  P T  +N+++R
Sbjct: 25  LKKIQAHVIVNGLQNHP--AISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNSIIR 82

Query: 82  GLAHSSKPTNAVLWYRQMLRGS-HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           G A S  P  A+ +Y +ML  S    D  T SF LKAC R+ AL +  ++H  ++R G+ 
Sbjct: 83  GFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYE 142

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
            D ++ T L+  Y + G +  A+ VFD M  RD+ +WNA+I+  +Q     EA+ ++  M
Sbjct: 143 RDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYM 202

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           + E V   +  T++G L++C H+GA   G K+H    E+ L  NV V NA+IDMYAKCG 
Sbjct: 203 RNENV-GVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGS 261

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           LD A EVF+ +   +   TWN+M++ F VHG G  A+  F QM  AGV+P+ +++L  LC
Sbjct: 262 LDGALEVFNGMP--RDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLC 319

Query: 321 ACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            C+H GLV++GV  F+ M++   VKP +KHYG +VD+ GRAG+L++A +I+       D 
Sbjct: 320 GCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDP 379

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           VLW+ LL + +++ +V + EIA R L ++G+ N GD VLL+ +YA       V R+RK +
Sbjct: 380 VLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGANDEQGVARMRKLI 439

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTS-CV 498
           K + +K  PG+S+IEV   +H+F   DKSH     IY+KL+E+  K    GY    S  +
Sbjct: 440 KKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATMAGYVEDKSQFI 499

Query: 499 LH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
            H    EE  E++  YHSEKLA+AFGL  T E TS+++ KNLR+CRDCH+  K +S+ +N
Sbjct: 500 FHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHEFTKFVSRAFN 559

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           R+IIVRDR+RFH FK G CSC+DYW
Sbjct: 560 RDIIVRDRLRFHHFKGGLCSCRDYW 584


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/580 (43%), Positives = 364/580 (62%), Gaps = 12/580 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE-LAYAHAL 64
           +LL KC+S        +KQ+QA+   T   QS +  V +K+I F  L+P    + +AH L
Sbjct: 34  SLLSKCTSLN-----ELKQIQAYTIKT-NLQSDI-SVLTKLINFCTLNPTTSYMDHAHHL 86

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F QI       FN + RG A S+ P  A   + ++L      D  T S  LKACA   AL
Sbjct: 87  FDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKAL 146

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
            E + +H   ++ G   +  +  TL+++YA+  ++ +A+ VFDEM    I S+NA+I G 
Sbjct: 147 REGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGY 206

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           A+ +  +EA+ LF+ ++   + +P +VT+L  + +C  LGA   G  IHEY++++  D  
Sbjct: 207 ARSSQPNEALSLFRELQASNI-EPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKY 265

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           V V  A+IDM+AKCG L  A  +F+ ++ R +   W+ M++AFA HGDG +A+ +FE+M 
Sbjct: 266 VKVNTALIDMFAKCGSLTDAISIFEGMRVRDT-QAWSAMIVAFATHGDGLKAISMFEEMK 324

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRL 363
           R GV+PD++++L  L AC+HAGLV+ G   F SM+   G+ P +KHYG +VDLLGRAG L
Sbjct: 325 REGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHL 384

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            EA + V  + +    +LW+TLL AC  +G+VEMA+    ++ E+   + GD+V+LSNLY
Sbjct: 385 DEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLY 444

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A   RW+DV  +RK MK+R V KVPG S +EV  V+H+FF+ D  H    E+   LDE+M
Sbjct: 445 ARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELM 504

Query: 484 FKIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
            +IK  GY   TS V H D+ EE KE  L YHSEKLA+AFGL++T   T+I+V KNLRIC
Sbjct: 505 KEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRIC 564

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH+  KLIS ++ R+I++RD  RFHRF+DG CSC D+W
Sbjct: 565 GDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/596 (41%), Positives = 364/596 (61%), Gaps = 39/596 (6%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           +KQ+ A L   G   +  F    + +   AL     L YA+ L    N P+    N+++R
Sbjct: 25  MKQIHAQLVVKGILNNPHF--HGQFVATIALHNTTNLDYANKLLNHNNNPTLFTLNSMIR 82

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRS---DALTCSFALKACARVLALFETLQIHSHVLRHG 138
             + SS P+ +  +Y  +L  ++ +   D  T +F ++ CA++ A    L +H  V++HG
Sbjct: 83  AYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKHG 142

Query: 139 FLAD-----------ALLG--------------------TTLLDVYAKVGEIVSAKKVFD 167
           F  D           A LG                    T +L+  AK G+I  A+K+FD
Sbjct: 143 FELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFD 202

Query: 168 EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227
           EM  RD  +WNA+IAG AQ   + EA+D+F  M+MEGV K NEV+++  L+AC HL    
Sbjct: 203 EMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGV-KLNEVSMVLVLSACTHLQVLD 261

Query: 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
            G  +H Y+   ++ M V +  A++DMYAKCG +D+A +VF  +K  +++ TW++ +   
Sbjct: 262 HGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMK-ERNVYTWSSAIGGL 320

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPN 346
           A++G G  +L+LF  M R GV+P+ +++++ L  C+  GLV++G + F+SM N  G+ P 
Sbjct: 321 AMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQ 380

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
           ++HYG +VD+ GRAGRL+EA + + S+ M   +  W  LL AC++Y + E+ EIA RK+V
Sbjct: 381 LEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIV 440

Query: 407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSD 466
           E+   N G +VLLSN+YA Y+ W+ V  +R+ MK + VKK+PG S IEV G +H+F   D
Sbjct: 441 ELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGD 500

Query: 467 KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIS 526
           KSH ++ EI  KL+EI   ++  GY A T+ VL DI EEEKE+AL  HSEK+A+AFGLIS
Sbjct: 501 KSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLIS 560

Query: 527 TSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
                 I+V  NLRIC DCH+V K+ISK++NREIIVRDR RFH FKDG CSCKDYW
Sbjct: 561 LKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/597 (39%), Positives = 367/597 (61%), Gaps = 42/597 (7%)

Query: 21  HIKQLQAHLTT--TGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNA 78
           H+KQ+ A + T     FQ       S +  F        LAYA  +F  +  P  + +N+
Sbjct: 82  HLKQVHAQIITHHNSPFQLSALASLSALSPFPTF-----LAYAKTIFHHLQNPPPSLYNS 136

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           ++R L+ S  P  A+  Y  ML+   + D +T  F +KAC      +  L +H+HV++ G
Sbjct: 137 LIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSG 196

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG----------- 187
           F  D+ + ++L+ +YA   ++ +AK++F+    RD+ SWNA+I G  +            
Sbjct: 197 FECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFD 256

Query: 188 --------------------NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227
                                  +EA+ LF +M+  GV KP E TV+  L+AC HLGA  
Sbjct: 257 RMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGV-KPTEATVVSLLSACAHLGALD 315

Query: 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
           +G  +H YI + R+++N +V  A++DMYAKCG +  A +VF+ ++  K ++ WNT++   
Sbjct: 316 KGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME-SKDVLAWNTIIAGM 374

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPN 346
           A+HG+   A +LF++M  AGV+P+D++++A L AC+HAG+VD+G +L + M++  G++P 
Sbjct: 375 AIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPK 434

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
           ++HYG V+DLL RAG L+EA +++ ++ M  +      LLG C+++G+ E+ E+  ++L+
Sbjct: 435 VEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLI 494

Query: 407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSD 466
            +   + G ++LLSN+YAA ++WDD  +VR  MK   + KVPG S IE+ G++H+F   D
Sbjct: 495 NLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGD 554

Query: 467 KSHVKWREIYEKLDEIMFKIKE-YGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
            SH +  +IYEKL+EI  ++K   GY+A T  VL D+ EE+KE+AL  HSEKLA+A+GL+
Sbjct: 555 WSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLL 614

Query: 526 STSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
                 +I++ KNLR+CRDCH VIKLISKVY REIIVRDR RFH F+DG CSC D+W
Sbjct: 615 HLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/578 (41%), Positives = 366/578 (63%), Gaps = 9/578 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LLQ C+S    S   +KQ+ A     G   +   P   K + F  +S    ++YA+ +F
Sbjct: 22  SLLQFCAS----SKHKLKQIHAFSIRHGVSLNN--PDMGKHLIFTIVSLSAPMSYAYNVF 75

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             I+ P+   +N ++RG A S  P+ A L+YRQM+      D  T  F LKA ++ L + 
Sbjct: 76  TVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVR 135

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E   IHS  +R+GF +   +  +LL +YA  G+  SA KVF+ M  RD+ +WN++I G A
Sbjct: 136 EGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFA 195

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
                +EA+ LF+ M +EGV +P+  TV+  L+A   LGA + G ++H Y+ +  L  N 
Sbjct: 196 LNGRPNEALTLFREMSVEGV-EPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNS 254

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V N+++D+YAKCG + +A  VF  +  R + V+W ++++  AV+G G  ALELF++M  
Sbjct: 255 HVTNSLLDLYAKCGAIREAQRVFSEMSERNA-VSWTSLIVGLAVNGFGEEALELFKEMEG 313

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQ 364
            G+ P +++++  L AC+H G++D+G   F  M   CG+ P ++HYG +VDLL RAG ++
Sbjct: 314 QGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVK 373

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           +A + ++++ +  + V+W+TLLGAC ++G + + EIA   L+ +   + GD+VLLSNLYA
Sbjct: 374 QAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYA 433

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
           +  RW DV  +R++M    VKK PG+S +E+G  +++F   D+SH + +++Y  L++I  
Sbjct: 434 SERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITE 493

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
            +K  GY   T+ VL DI EEEKE AL YHSEK+A+AF L++T   T I+V KNLR+C D
Sbjct: 494 LLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCAD 553

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH  IKLI+K+Y+REI++RDR RFH F+ G+CSCKDYW
Sbjct: 554 CHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/540 (41%), Positives = 342/540 (63%), Gaps = 2/540 (0%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           S ++   ALS    + YA ++FRQI+ P T +FN ++RG  +     NA+  Y +ML   
Sbjct: 21  SNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERG 80

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
             SD  T     KACA + ++ E +QIH ++ + G   D  +  +L+++Y K G+I  + 
Sbjct: 81  VESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSC 140

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
            VF+ M  RD+ASW+A+IA  A   + SE + +F  M  EG  +P E  ++  L+AC HL
Sbjct: 141 SVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHL 200

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
           GA   G   H  +     +MNV+V  ++IDMY KCG ++K   +F  +  +K+ ++++ M
Sbjct: 201 GALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRM-VKKNQLSYSVM 259

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCG 342
           +   A+HG G  AL++F  M   G+KPDDV YL  L ACNHAGLVD+G++ FN M    G
Sbjct: 260 ITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHG 319

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           ++P ++HYG +V L+GRAG L +A + ++S+ +  + V+W+ LL AC+ + ++E+ EIA+
Sbjct: 320 IEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAA 379

Query: 403 RKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKF 462
           + L E+ S+N GD+V+LSN+YA  +RW+DV ++R  M  +   + PGFS ++V   I+KF
Sbjct: 380 KSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKF 439

Query: 463 FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
            + D SH + + +YE + ++ +++K  GY+  TS VL D+ EEEK   L  HS+KLA+AF
Sbjct: 440 VSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQKLAMAF 499

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            LI TS+   I++ +NLR+C DCH   KLIS +Y REI VRDR RFH FKDG CSC+DYW
Sbjct: 500 ALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCSCRDYW 559


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/573 (41%), Positives = 372/573 (64%), Gaps = 9/573 (1%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           L++KC S   +  IH     A L T     S +     KII F ALSP  ++ YA  LF 
Sbjct: 63  LIRKCRSMRVLRQIH-----ARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFS 117

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTN-AVLWYRQMLR-GSHRSDALTCSFALKACARVLAL 124
           QI  P+   +N+++RG + S  P+   V+ +R+M+R G    +  T +F LKAC+ V AL
Sbjct: 118 QIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSAL 177

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
            E  Q+H++VL+ GF +   + T L++ YAK  +IV A KVFDE+  R++ +W+ +I+G 
Sbjct: 178 EEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGY 237

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           A+  L +EA+ LF+ M+  GV  P+EVT++  ++AC   GA   G  +H YI ++ ++ +
Sbjct: 238 ARIGLVNEALGLFRDMQKAGVV-PDEVTMVSVISACAASGALDTGKWVHAYINKQLIETD 296

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + +  A+++MYAKCG +++A EVFD +   K    W++M++  A++G    ALE F +M 
Sbjct: 297 LELSTALVNMYAKCGCIERAKEVFDAMPV-KDTKAWSSMIVGLAINGLAEDALEEFFRME 355

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
            A VKP+ V+++  L AC H+GLV +G R ++SM   G+ P+M+ YG +VDLL RA  ++
Sbjct: 356 EAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVE 415

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           +AC +V+++ +  + V+W+TLL  C+   +++ +E+ +++L+E+  +N  +++LLSNLYA
Sbjct: 416 DACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYA 475

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
           +  +W+ + +VRK MK   +K VPG S IEV G++H+F   D SH +  E+ E L +I  
Sbjct: 476 SMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISK 535

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
           ++   G+  G S VLH++ +EEKENALC HSE+LA+A+GL+ T    +I++ KNLR+C D
Sbjct: 536 RVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGD 595

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           CH+V K+IS  Y REIIVRDRVRFH+F +G+CS
Sbjct: 596 CHEVTKIISAEYRREIIVRDRVRFHKFVNGSCS 628


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/595 (40%), Positives = 369/595 (62%), Gaps = 38/595 (6%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQF-----QSKLFPVRSKIIEFYALSPLNELAYA 61
           LL+KC +        +KQ+ AH+ TTG        S++  + S I+  +ALS        
Sbjct: 15  LLEKCKTLDT-----LKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALS-------- 61

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAV--LWYRQMLRGSHRSDALTCSFALKACA 119
             +F  I  P+   +N ++  LA+    T+    L+ R +   + + +  T     KAC 
Sbjct: 62  --IFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACG 119

Query: 120 RVLALFETLQIHSHVLRHGFL---ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
               L     +H+HVL+  FL    D  +   LL+ YAK G++ + + +F+++   D+AS
Sbjct: 120 SQPWLRHGRALHTHVLK--FLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLAS 177

Query: 177 WNALIAGLAQGN--------LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
           WN++++     +        L+ E + LF  M+ + + K NEVT++  ++AC  LGA  +
Sbjct: 178 WNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQ-KSLIKANEVTLVALISACAELGALSQ 236

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G   H Y+ +  L +N  V  A+IDMY+KCG LD A ++FD +  R +L  +N M+  FA
Sbjct: 237 GAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLC-YNAMIGGFA 295

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNM 347
           +HG G +AL+LF++M   G+ PDDV+ +  +C+C+H GLV++G  +F SM    GV+P +
Sbjct: 296 IHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKL 355

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
           +HYG +VDLLGRAGRL+EA + V ++ M  + V+W++LLGA +++G++E+ E+  + L++
Sbjct: 356 EHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQ 415

Query: 408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDK 467
           +     G++VLLSN+YA+  RWDDV RVRK MK+  + KVPG S +EVGG +H+F   DK
Sbjct: 416 LEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDK 475

Query: 468 SHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
           +H + +EIY KL+E+  ++ EYG+   T  VL DI EEEKE+AL YHSE+LA+AF LI++
Sbjct: 476 THPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIAS 535

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
                I++ KNLR+C DCH   KLISK+Y REIIVRDR RFH FK+GACSC DYW
Sbjct: 536 HHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/607 (40%), Positives = 348/607 (57%), Gaps = 41/607 (6%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQ 67
           L  CS+   +   H + ++  L+              ++I+F A+S   +L YA  +F +
Sbjct: 27  LDSCSTMAELKQYHSQIIRLGLSADND-------AMGRVIKFCAISKSGDLNYALEVFDK 79

Query: 68  INAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET 127
           I  P    +N + RG        N +  Y +ML  S   +  T    ++AC    A+ E 
Sbjct: 80  IPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEG 139

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW---------- 177
            QIH+HVL+ GF AD      L+ +Y     +  A++VFD M  RD+ SW          
Sbjct: 140 KQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQW 199

Query: 178 ---------------------NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
                                NA+IA   Q N   EA  LF RM++E V   ++      
Sbjct: 200 GFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVL-DKFVAASM 258

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
           L+AC  LGA ++G  IH YI +  ++++  +   VIDMY KCG L+KA EVF+ +  +K 
Sbjct: 259 LSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELP-QKG 317

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFN 336
           + +WN M+   A+HG G  A+ELF++M R  V PD ++++  L AC H+GLV++G   F 
Sbjct: 318 ISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQ 377

Query: 337 SMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395
            M    G+KP M+H+G +VDLLGRAG L+EA  ++  + +  D  +   L+GAC+++G+ 
Sbjct: 378 YMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNT 437

Query: 396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEV 455
           E+ E   +K++E+  +N G +VLL+NLYA+  RW+DV +VRK M +R VKK PGFS IE 
Sbjct: 438 ELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIES 497

Query: 456 GGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHS 515
              + +F    ++H + +EIY KLDEI+  I+  GY   T  VLHDI EEEKEN L YHS
Sbjct: 498 ESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHS 557

Query: 516 EKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGA 575
           EKLA+AFGL+ T    ++++ KNLRICRDCH   KLISKVY+REII+RDR RFH F+ G 
Sbjct: 558 EKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGG 617

Query: 576 CSCKDYW 582
           CSCKDYW
Sbjct: 618 CSCKDYW 624


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/580 (42%), Positives = 361/580 (62%), Gaps = 12/580 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLN-ELAYAHAL 64
           +LL KC+S        +KQLQA    T    S L  V +K I F +L+P    + +AH L
Sbjct: 25  SLLPKCTSLR-----ELKQLQAFAIKT-HLHSDL-SVLTKFINFCSLNPTTTSMQHAHHL 77

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F QI  P    FN + RG A +  P  A   + Q+L      D  T    LKACA   AL
Sbjct: 78  FDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKAL 137

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
            E  Q+H   ++ G   +  +  TL+++Y    E+  A++VFD++    + ++NA+I G 
Sbjct: 138 EEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGY 197

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           A+G+  +EA+ LF+ ++   + KP +VT+L  L++C  LGA   G  +HEY+++   +  
Sbjct: 198 ARGSRPNEALSLFRELQARNL-KPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRF 256

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           V V  A+IDMYAKCG LD A  VF+N+  R +   W+ M+MA+A+HG G +A+ LF++M 
Sbjct: 257 VKVDTALIDMYAKCGSLDDAVCVFENMAVRDT-QAWSAMIMAYAIHGHGLKAVSLFKEMR 315

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRL 363
           +AG +PD++++L  L AC+H GLV++G   F  M +  GV P +KHYG +VDLLGRAGRL
Sbjct: 316 KAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRL 375

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
           +EA + +  + +    +LW+TLL AC  +G+VE+ +    ++ E+  ++ GD+++LSNL 
Sbjct: 376 EEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLC 435

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A   RW+DV  VRK M  R V K+PG S +EV  V+H+FF+ D  H    ++++ LDE++
Sbjct: 436 ARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELV 495

Query: 484 FKIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
            ++K  GY   TS V H D+ +EEKE  L YHSEKLA+ FGL++T   T+I+V KNLR+C
Sbjct: 496 KELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 555

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH   KLIS +++R+II+RD  RFH FKDG CSC+DYW
Sbjct: 556 GDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/584 (40%), Positives = 367/584 (62%), Gaps = 13/584 (2%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSP-LNELAY 60
           +++ +L+ KC+S        +KQ+QA+   T Q       V +K+I F   +P +  + +
Sbjct: 36  SSILSLIPKCTSLR-----ELKQIQAYTIKTHQNNPT---VLTKLINFCTSNPTIASMDH 87

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH +F +I  P    FN + RG A    P  A+L   Q+L      D  T S  LKACAR
Sbjct: 88  AHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACAR 147

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL E  Q+H   ++ G   +  +  TL+++Y    ++ +A++VFD++G   + ++NA+
Sbjct: 148 LKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAI 207

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I   A+ +  +EA+ LF+ ++  G+ KP +VT+L AL++C  LGA   G  IHEY+++  
Sbjct: 208 ITSCARNSRPNEALALFRELQESGL-KPTDVTMLVALSSCALLGALDLGRWIHEYVKKNG 266

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
            D  V V  A+IDMYAKCG LD A  VF ++  R+    W+ M++A+A HG G +A+ + 
Sbjct: 267 FDQYVKVNTALIDMYAKCGSLDDAVSVFKDMP-RRDTQAWSAMIVAYATHGHGSQAISML 325

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGR 359
            +M +A V+PD++++L  L AC+H GLV++G   F+SM +  G+ P++KHYG ++DLLGR
Sbjct: 326 REMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGR 385

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGRL+EAC  +  + +    +LW+TLL +C  +G+VEMA++  +++ E+  ++ GD+V+L
Sbjct: 386 AGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVIL 445

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SNL A   RWDDV  +RK M ++   KVPG S IEV  V+H+FF+ D  H     ++  L
Sbjct: 446 SNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHAL 505

Query: 480 DEIMFKIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           DE++ ++K  GY   TS V + DI +EEKE  L YHSEKLA+ +GL++T   T+I+V KN
Sbjct: 506 DELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKN 565

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH+  K IS ++ R+II+RD  RFH FKDG CSC DYW
Sbjct: 566 LRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/522 (44%), Positives = 350/522 (67%), Gaps = 7/522 (1%)

Query: 64  LFRQINAPSTNDFNAVLRGL-AHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACARV 121
           LF QI  P+   +N+++R L A  S P  AV  YR+MLR GS R ++ T +FALKACA V
Sbjct: 131 LFDQIPDPTAFCYNSLIRALPAAGSAPALAV--YRRMLRAGSPRPNSFTLAFALKACAAV 188

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM-GVRDIASWNAL 180
            A  E  Q+H+  LR G    A + T LL++YAK  ++  A+ VFD M G +++ +W+A+
Sbjct: 189 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAM 248

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           ++G ++  + +EA+ LF+ M+  GV +P+EVT++  ++AC   GA   G  +H YI  + 
Sbjct: 249 VSGYSRVGMVNEALGLFREMQAVGV-EPDEVTMVSVISACAKAGALDLGKWVHAYIDRKG 307

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           + +++ +  A+IDMYAKCGL+++A  VFD +   K    W+ M++ FA+HG    AL LF
Sbjct: 308 ITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALGLF 366

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M    V+P++V+++  L AC H+GLV+DG R ++ M N G+KP+M++YG +VDLL R+
Sbjct: 367 SRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRS 426

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L +A   V  + +  + V+W+TLL AC+    +++AE A+++L+E+  +N  ++VLLS
Sbjct: 427 GLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLS 486

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           NLYA+  +WD V  +R+ MK ++V  + G S IE+ G +H+F  SD SH + REI   L 
Sbjct: 487 NLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLR 546

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           E+  +++  G+   T+ VLHD+GEEEKE ALC HSE+LA+A+GL+ T     I+V KNLR
Sbjct: 547 EMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLR 606

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            C DCH+V K+ISK YNREI+VRDRVRFH+F  G+CSCKD+W
Sbjct: 607 FCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/522 (44%), Positives = 350/522 (67%), Gaps = 7/522 (1%)

Query: 64  LFRQINAPSTNDFNAVLRGL-AHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACARV 121
           LF QI  P+   +N+++R L A  S P  AV  YR+MLR GS R ++ T +FALKACA V
Sbjct: 82  LFDQIPDPTAFCYNSLIRALPAAGSAPALAV--YRRMLRAGSPRPNSFTLAFALKACAAV 139

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM-GVRDIASWNAL 180
            A  E  Q+H+  LR G    A + T LL++YAK  ++  A+ VFD M G +++ +W+A+
Sbjct: 140 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAM 199

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           ++G ++  + +EA+ LF+ M+  GV +P+EVT++  ++AC   GA   G  +H YI  + 
Sbjct: 200 VSGYSRVGMVNEALGLFREMQAVGV-EPDEVTMVSVISACAKAGALDLGKWVHAYIDRKG 258

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           + +++ +  A+IDMYAKCGL+++A  VFD +   K    W+ M++ FA+HG    AL LF
Sbjct: 259 ITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALGLF 317

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M    V+P++V+++  L AC H+GLV+DG R ++ M N G+KP+M++YG +VDLL R+
Sbjct: 318 SRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRS 377

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L +A   V  + +  + V+W+TLL AC+    +++AE A+++L+E+  +N  ++VLLS
Sbjct: 378 GLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLS 437

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           NLYA+  +WD V  +R+ MK ++V  + G S IE+ G +H+F  SD SH + REI   L 
Sbjct: 438 NLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLR 497

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           E+  +++  G+   T+ VLHD+GEEEKE ALC HSE+LA+A+GL+ T     I+V KNLR
Sbjct: 498 EMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLR 557

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            C DCH+V K+ISK YNREI+VRDRVRFH+F  G+CSCKD+W
Sbjct: 558 FCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/557 (41%), Positives = 352/557 (63%), Gaps = 13/557 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F+  LF V S +++ Y  S   EL  A  LF +I+  +   + +++ G   +     A+L
Sbjct: 183 FEPDLF-VSSALVDMY--SKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALL 239

Query: 95  WYRQMLRGSHRS--------DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLG 146
            +++ L     S        D +     L AC+RV     T  +H  +++ GF  D  + 
Sbjct: 240 LFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVE 299

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            TL+D YAK GE+  +++VFD M  RD+ SWN++IA  AQ  +++E++++F RM  +G  
Sbjct: 300 NTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEI 359

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
             N VT+   L AC H G+ + G  IH+ + +  L+ NV V  ++IDMY KCG ++ A +
Sbjct: 360 NYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARK 419

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
            FD ++  K++ +W+ MV  + +HG    ALE+F +M  AGVKP+ +++++ L AC+HAG
Sbjct: 420 AFDRMR-EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 478

Query: 327 LVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           L+++G   F +M++   V+P ++HYG +VDLLGRAG L+EA D++K + +  D V+W  L
Sbjct: 479 LLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGAL 538

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGAC+++ +V++ EI++RKL E+   NCG +VLLSN+YA   RW+DV R+R  MKN  + 
Sbjct: 539 LGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLV 598

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K PGFS +++ G +H F   D+ H +  +IYE L+++  K++E GY    + VLHD+G E
Sbjct: 599 KPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHE 658

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE  L  HSEKLAVAFG+++T   T+I + KNLR+C DCH  IK ISK+ +REI+VRD 
Sbjct: 659 EKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDS 718

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F+DG CSC DYW
Sbjct: 719 KRFHHFRDGLCSCGDYW 735



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 162/309 (52%), Gaps = 9/309 (2%)

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           + ++  +   +N+V+  LA S     A+  +  M + S + +  T   A+K+C+ +L L 
Sbjct: 110 KYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLH 169

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              Q H   L  GF  D  + + L+D+Y+K GE+  A+ +FDE+  R+I SW ++I G  
Sbjct: 170 SGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYV 229

Query: 186 QGNLASEAVDLFKRMKME-------GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           Q + A  A+ LFK   +E       G    + + ++  L+AC  +      + +H ++ +
Sbjct: 230 QNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIK 289

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
              + ++ V N ++D YAKCG L  +  VFD +   + +++WN+++  +A +G    ++E
Sbjct: 290 RGFEGDLGVENTLMDAYAKCGELGVSRRVFDGM-AERDVISWNSIIAVYAQNGMSTESME 348

Query: 299 LFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           +F +M + G +  + V+  A L AC H+G    G  + + +   G++ N+    S++D+ 
Sbjct: 349 IFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMY 408

Query: 358 GRAGRLQEA 366
            + G+++ A
Sbjct: 409 CKCGKVEMA 417



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +F+    + ++ +WN+++   A  GD   AL  F  M +  +KP+  ++  A+ +C+   
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            +  G +        G +P++    ++VD+  + G L++A  +   +S   ++V W +++
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISH-RNIVSWTSMI 225

Query: 387 GACQLYGDVEMAEIASRKLVEMGSNNCGD 415
                  D   A +  ++ +   S + GD
Sbjct: 226 TGYVQNDDAHRALLLFKEFLVEESGSEGD 254


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/582 (40%), Positives = 358/582 (61%), Gaps = 9/582 (1%)

Query: 6   ALLQKCSSNGAVSH-IHIKQLQAHLTTTGQFQSKLFPVRS-KIIEFYALS-PLNELAYAH 62
           AL    S+  +VSH   + Q+ AH+  T   Q   +P  S + +   ALS PL + +Y+ 
Sbjct: 2   ALETVISAIKSVSHKTRLLQIHAHIIRTTLIQ---YPTVSLQFLSRIALSGPLQDASYSQ 58

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
             F Q++ P  + +N ++R  + S  P   +L YR M R    +D L+ SFA+K+C R L
Sbjct: 59  RFFGQLSHPLVSHYNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFL 118

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            L   +Q+H ++ + G   D LL T ++D+Y+       A KVFDEM  RD  +WN +I+
Sbjct: 119 YLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMIS 178

Query: 183 GLAQGNLASEAVDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
              + N   +A+ LF  M+      +P++VT L  L AC HL A + G++IH YI E   
Sbjct: 179 CCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGY 238

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
              + +CN++I MY++CG LDKA+EVF  +   K++V+W+ M+   A++G G  A+E FE
Sbjct: 239 RDALNLCNSLISMYSRCGCLDKAYEVFKGMG-NKNVVSWSAMISGLAMNGYGREAIEAFE 297

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRA 360
           +M R GV PDD ++   L AC+++G+VD+G+  F+ M+   GV PN+ HYG +VDLLGRA
Sbjct: 298 EMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRA 357

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L +A  ++ S+ +  D  +W+TLLGAC+++G V + E     L+E+ +   GD+VLL 
Sbjct: 358 GLLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLL 417

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+Y++   W+ V  VRK MKN+ ++  PG S IE+ G +H+F   D SH + REIYE LD
Sbjct: 418 NIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIYETLD 477

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           EI  +++  GY    S  LH + ++EK   L +HSEKLAVAFG+++T   T ++V  NLR
Sbjct: 478 EINHQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKLAVAFGVLATPPGTILRVASNLR 537

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +C DCH+ +KL S VYNR++++RD  RFH F+ G CSC DYW
Sbjct: 538 VCVDCHNFLKLFSGVYNRDVVLRDHNRFHHFRGGRCSCSDYW 579


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/586 (40%), Positives = 374/586 (63%), Gaps = 25/586 (4%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTG-QFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LQ C+S   +  IH     +H+   G Q    +F   + ++ F A+S    L++A  LF
Sbjct: 11  MLQGCNSMKKLRKIH-----SHVIINGLQHHPSIF---NHLLRFCAVSVTGSLSHAQLLF 62

Query: 66  RQINA-PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS-HRSDALTCSFALKACARVLA 123
              ++ PST+D+N ++RG ++SS P N++L+Y +ML  S  R D  T +FALK+C R+ +
Sbjct: 63  DHFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKS 122

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           + + L+IH  V+R GFL DA++ T+L+  Y+  G +  A KVFDEM VRD+ SWN +I  
Sbjct: 123 IPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICC 182

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            +   L ++A+ ++KRM  EGV   +  T++  L++C H+ A   G  +H    + R + 
Sbjct: 183 FSHVGLHNQALSMYKRMGNEGVCG-DSYTLVALLSSCAHVSALNMGVMLHRIACDIRCES 241

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            V V NA+IDMYAKCG L+ A  VF+ ++ ++ ++TWN+M++ + VHG G  A+  F +M
Sbjct: 242 CVFVSNALIDMYAKCGSLENAIGVFNGMR-KRDVLTWNSMIIGYGVHGHGVEAISFFRKM 300

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGR 362
             +GV+P+ +++L  L  C+H GLV +GV  F  M++   + PN+KHYG +VDL GRAG+
Sbjct: 301 VASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQ 360

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L+ + +++ + S   D VLW+TLLG+C+++ ++E+ E+A +KLV++ + N GD+VL++++
Sbjct: 361 LENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSI 420

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           Y+A         +RK +++ D++ VPG+S+IE+G  +HKF   DK H +   IY +L E+
Sbjct: 421 YSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEV 480

Query: 483 MFKIKEYGY----AAGTSCVLHD--IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
           + +    GY    +  T+  L D  +G  +       HSEKLA+A+GL+ T+  T++++ 
Sbjct: 481 INRAILAGYKPEDSNRTAPTLSDRCLGSADTS-----HSEKLAIAYGLMRTTAGTTLRIT 535

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+CRDCH   K +SK +NREIIVRDRVRFH F DG CSC DYW
Sbjct: 536 KNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/581 (38%), Positives = 359/581 (61%), Gaps = 10/581 (1%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           L +L++ C+    +  IH     AH+ TT   Q  +  +R   +   A +P  +L Y+  
Sbjct: 30  LISLIKSCTHKSQLLQIH-----AHIITTSSIQDPIVSLR--FLTRTASAPFRDLGYSRR 82

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF  +  P  + +NA+LR  + S  P   +  YR M R   R+D L+ SFA+K+C ++L+
Sbjct: 83  LFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLS 142

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L   +QIH+ +  +G  AD+LL T+++D+Y+  G+   A K+FDE+  +D+ +WN LI+ 
Sbjct: 143 LLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISC 202

Query: 184 LAQGNLASEAVDLFKRMKMEGVF-KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           L +     +A+ LF+ M+      +P++VT L  L AC  L A + G++IH YI++   +
Sbjct: 203 LTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYN 262

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
               +CN++I MY++CG +DKA+EVFD +   K++V+W+ M+   +++G G  A+E F +
Sbjct: 263 TESNLCNSLISMYSRCGRMDKAYEVFDKMT-EKNVVSWSAMISGLSMNGHGREAIEAFWE 321

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAG 361
           M + GV+P D ++ A L AC+H GLVD+G+  F+ M     + PN+ HYG +VDLLGRAG
Sbjct: 322 MQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAG 381

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L +A +++ S+ +  D  +W+TLLGAC+++G   + E     L+E+ S   GD+VLL N
Sbjct: 382 MLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLN 441

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +Y++   WD V  +RK MK + +   P  + IE+ GV+H+F   D SH    +IY++LDE
Sbjct: 442 IYSSAGNWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDE 501

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           I  ++K  GY A  S  LH +  ++K  AL  HSEKLA+AFG+++T    +I++  N+R 
Sbjct: 502 INKQLKIAGYEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRT 561

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH+  K IS VYNR+++VRDR RFH F++G CSC D+W
Sbjct: 562 CMDCHNFAKYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/563 (40%), Positives = 360/563 (63%), Gaps = 5/563 (0%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           ++Q+ A + T     S +  + SKI+ F ALSP     YA  +F QI  P    +N+V+R
Sbjct: 4   LRQIHARILTHVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIR 63

Query: 82  GLAHSSKPTN-AVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           G  ++  P+   +  ++ M+ +G    +  T +F LKAC+ ++AL E  QIH+ +LR GF
Sbjct: 64  GCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGF 123

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
            +   + ++L++ Y+K  EI  A+KVFDE+  R++  W+A+++G A+  + +EA+ +F+ 
Sbjct: 124 SSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFRE 183

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M++ G+ +P+EV+++G L+AC  +GA   G  +H YI++  + +++ +  A+I+MYAKCG
Sbjct: 184 MQVVGI-EPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCG 242

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            ++KA E+FD ++ + S   W++M++  A+HG    AL +F +M  A  KP+ V+++  L
Sbjct: 243 CIEKAREIFDEMRVKDS-KAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGIL 301

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            AC H GLV DG R ++SM   G++P+M+HYG +VDLL R G + EA D    +    D 
Sbjct: 302 SACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPT-PDP 360

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           V+W+TLL A      ++ AE+ + KL+E+      ++++L+NLYA+  + + V  VRK M
Sbjct: 361 VIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMM 420

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           K   +K +PG + IEV G +H F T D SH +  EI + L ++  KI   GY    S VL
Sbjct: 421 KENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVSVVL 480

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           H + +EEKEN L  HSE+LA+A+GL+ T    +I++ KNLR+C DCH+V K+ISK+Y+RE
Sbjct: 481 HLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDRE 540

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           IIVRDRVRFH+F +G CSCKDYW
Sbjct: 541 IIVRDRVRFHKFVNGTCSCKDYW 563


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/561 (40%), Positives = 353/561 (62%), Gaps = 4/561 (0%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ AH+   G F        S ++   AL+    + YA ++F QI+ PS+ D+N ++RG
Sbjct: 15  KQVHAHVLKCGIFFDTF--CMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRG 72

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
             +  K   A+L Y  M+      D  T  F LKAC+ +  + E +Q+H HV + G   D
Sbjct: 73  NVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGD 132

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
            ++  +L+++Y K GEI +A  VF+ M  + +ASW+A+I   A   + +E + L  +M  
Sbjct: 133 VIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSS 192

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           EG  +  E T++  L+AC HLG+   G  IH  +     ++NVVV  ++IDMY K G L+
Sbjct: 193 EGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCLE 252

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
           K   VF N+   K+  ++  M+   A+HG G  AL++F +M   G+ PDDV Y+    AC
Sbjct: 253 KGLRVFKNMS-EKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSAC 311

Query: 323 NHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +HAGLV++G++ F SM     ++P ++HYG +VDLLGR G L+EA +++KS+S+  + V+
Sbjct: 312 SHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVI 371

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W++LL AC+++ ++E+ +IA+  L  +  NN GD+++L+N+YA  ++WDDV ++R  +  
Sbjct: 372 WRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAE 431

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           R++ + PGFS IE    ++KF + DKS  +W  IYE + ++ +++K  GY   TS VL D
Sbjct: 432 RNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLD 491

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           + +EEK+  L +HS+KLA+AFGLI TSE + +++ +NLR+C DCH   K IS +Y REI 
Sbjct: 492 VDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREIT 551

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRDR+RFH FK+G+CSCKDYW
Sbjct: 552 VRDRLRFHHFKNGSCSCKDYW 572



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 125/252 (49%), Gaps = 5/252 (1%)

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYA--KVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           E  Q+H+HVL+ G   D    + L+   A  K G +  A  +F ++       +N +I G
Sbjct: 13  EFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRG 72

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
                   EA+ L+  M   GV +P++ T    L AC  LG   EG ++H ++ +  L+ 
Sbjct: 73  NVNDMKLEEALLLYVDMIERGV-EPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEG 131

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           +V+V N++I+MY KCG +  A +VF+ +   KS+ +W+ ++ A A        L L  +M
Sbjct: 132 DVIVQNSLINMYGKCGEIKNACDVFNGMD-EKSVASWSAIIGAHACVEMWNECLMLLGKM 190

Query: 304 GRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
              G  + ++ + +  L AC H G  D G  +   +     + N+    S++D+  ++G 
Sbjct: 191 SSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGC 250

Query: 363 LQEACDIVKSVS 374
           L++   + K++S
Sbjct: 251 LEKGLRVFKNMS 262


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/605 (39%), Positives = 364/605 (60%), Gaps = 37/605 (6%)

Query: 1   MANLN----ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLN 56
           M NLN      LQKC +   +  +H + L   L+    + S L    SK    YA +   
Sbjct: 1   MLNLNHPILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFASTYAFT--- 57

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTN-AVLWYRQML-RGSHRSDALTCSFA 114
                  +F  I  P+   +N ++  L H S   + A   Y  +L   + + ++ T    
Sbjct: 58  -------IFNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSL 110

Query: 115 LKACARVLALFETLQIHSHVLRHGFLA---DALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
            KACA    L     +H+HVL+  FL    D  +  +LL+ YAK G++  ++ +FD++  
Sbjct: 111 FKACASHPWLQHGPPLHAHVLK--FLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISE 168

Query: 172 RDIASWNALIAGLAQ-------------GNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
            D+A+WN ++A  AQ              +++ EA+ LF  M++  + KPNEVT++  ++
Sbjct: 169 PDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQI-KPNEVTLVALIS 227

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC +LGA  +G   H Y+    L +N  V  A++DMY+KCG L+ A ++FD +  R +  
Sbjct: 228 ACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFC 287

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
            +N M+  FAVHG G +ALEL+  M    + PD  + +  + AC+H GLV++G+ +F SM
Sbjct: 288 -YNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESM 346

Query: 339 ANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
               G++P ++HYG ++DLLGRAGRL+EA + ++ + M  + +LW++LLGA +L+G++EM
Sbjct: 347 KGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEM 406

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
            E A + L+E+     G++VLLSN+YA+  RW+DV RVR  MK+  V K+PGFS +E+ G
Sbjct: 407 GEAALKHLIELEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEING 466

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            +H+F T DK+H   +EIY K+ EI  ++ EYG+   TS VL D+ EE+KE+ L YHSE+
Sbjct: 467 AMHEFLTGDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSER 526

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LA+AF LI++S +  I++ KNLR+C DCH + KLIS  Y R+IIVRDR RFH FKDG+CS
Sbjct: 527 LAIAFALIASSSSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCS 586

Query: 578 CKDYW 582
           C DYW
Sbjct: 587 CLDYW 591


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/557 (42%), Positives = 350/557 (62%), Gaps = 13/557 (2%)

Query: 35   FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
            F++ LF V S +I+ Y  S   +L  A ALF +I   +   + +++ G   + +  NA+L
Sbjct: 1173 FETDLF-VSSALIDMY--SKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 1229

Query: 95   WYRQMLRGSHRS--------DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLG 146
             ++  L              D++     L AC+RV     T  +H  V++ GF     +G
Sbjct: 1230 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVG 1289

Query: 147  TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
             TL+D YAK G+ + +KKVFD M  +D  SWN++IA  AQ  L+ EA+++F  M      
Sbjct: 1290 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 1349

Query: 207  KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            + N VT+   L AC H GA + G  IH+ + +  L+ NV V  ++IDMY KCG ++ A +
Sbjct: 1350 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 1409

Query: 267  VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
             FD +K  K++ +W  MV  + +HG    AL++F +M RAGVKP+ +++++ L AC+HAG
Sbjct: 1410 TFDRMK-EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAG 1468

Query: 327  LVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
            LV++G   FN+M +   ++P ++HYG +VDL GRAG L EA +++K + M  D V+W +L
Sbjct: 1469 LVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSL 1528

Query: 386  LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
            LGAC+++ +V++ EIA++KL E+  +NCG +VLLSNLYA   RW DV R+R  MKNR + 
Sbjct: 1529 LGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLV 1588

Query: 446  KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
            K PGFS +E+ G +H F   DK H     IY+ L+++  ++++ GY    + VLHD+ EE
Sbjct: 1589 KPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEE 1648

Query: 506  EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
            EKE  L  HSEKLAVAFG+++++  T+I + KNLR+C DCH VIKLISK+ +R+ +VRD 
Sbjct: 1649 EKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDS 1708

Query: 566  VRFHRFKDGACSCKDYW 582
             RFH FKDG CSC DYW
Sbjct: 1709 KRFHHFKDGVCSCGDYW 1725



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 202/399 (50%), Gaps = 43/399 (10%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LLQ C +       H++Q+ A +  +G    +L  +  K+I  Y  S    +AYA  LF 
Sbjct: 33  LLQNCKN-----FKHLRQIHAKIIRSGLSNDQL--LTRKLIHLY--STHGRIAYAILLFY 83

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           QI  P T  +N ++R    +     A++ Y+ M+     +D  T  F +KAC   L++  
Sbjct: 84  QIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDL 143

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
              +H  ++++GF  D  +   L+D Y K G    A KVF++M VR++ SW  +I+GL  
Sbjct: 144 GKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLIS 203

Query: 187 -GNL------------------------------ASEAVDLFKRMKMEGVFKPNEVTVLG 215
            G+L                                EA++LFKRM+ E +F PNE T++ 
Sbjct: 204 CGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIF-PNEYTMVS 262

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            + AC  +G    G  IH+Y  +  +++ V +  A+IDMY+KCG +  A EVF+ +  RK
Sbjct: 263 LIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RK 321

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
           SL TWN+M+ +  VHG G  AL LF +M R  VKPD ++++  LCAC H   V +G   F
Sbjct: 322 SLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYF 381

Query: 336 NSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
             M  + G+ P  +HY  + +L  R+  L EA    K V
Sbjct: 382 TRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 156/311 (50%), Gaps = 9/311 (2%)

Query: 64   LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
             ++ ++  + + +N+V+  LA       A+  +  + +        +    +K+C+ +  
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 124  LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
            L      H      GF  D  + + L+D+Y+K G++  A+ +FDE+ +R++ SW ++I G
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217

Query: 184  LAQGNLASEAVDLFKRMKME------GVFKP-NEVTVLGALAACGHLGAWKEGDKIHEYI 236
              Q   A  A+ LFK    E      G   P + V ++  L+AC  +      + +H ++
Sbjct: 1218 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 1277

Query: 237  REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
             ++  D ++ V N ++D YAKCG    + +VFD ++  K  ++WN+M+  +A  G    A
Sbjct: 1278 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWME-EKDDISWNSMIAVYAQSGLSGEA 1336

Query: 297  LELFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
            LE+F  M R  GV+ + V+  A L AC HAG +  G  + + +    ++ N+    S++D
Sbjct: 1337 LEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIID 1396

Query: 356  LLGRAGRLQEA 366
            +  + GR++ A
Sbjct: 1397 MYCKCGRVEMA 1407


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/613 (39%), Positives = 361/613 (58%), Gaps = 46/613 (7%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRS-KIIEFYALSPLNELAYAH 62
           L  L+ K  S   V  IH   L+ +L    ++     PV + K+   YA     ++ ++ 
Sbjct: 32  LAVLIDKSQSVDEVLQIHAAILRHNLLLHPRY-----PVLNLKLHRAYASH--GKIRHSL 84

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           ALF Q   P    F A +   + +     A L Y Q+L      +  T S  LK+C+   
Sbjct: 85  ALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS 144

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR---------- 172
                  IH+HVL+ G   D  + T L+DVYAK G++VSA+KVFD M  R          
Sbjct: 145 GKL----IHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMIT 200

Query: 173 ---------------------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
                                DI SWN +I G AQ    ++A+ LF+++  EG  KP+E+
Sbjct: 201 CYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEI 260

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           TV+ AL+AC  +GA + G  IH +++  R+ +NV VC  +IDMY+KCG L++A  VF++ 
Sbjct: 261 TVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDT 320

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDD 330
             RK +V WN M+  +A+HG    AL LF +M G  G++P D++++  L AC HAGLV++
Sbjct: 321 P-RKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNE 379

Query: 331 GVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           G+R+F SM    G+KP ++HYG +V LLGRAG+L+ A + +K+++M  D VLW ++LG+C
Sbjct: 380 GIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSC 439

Query: 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPG 449
           +L+GD  + +  +  L+ +   N G +VLLSN+YA+   ++ V +VR  MK + + K PG
Sbjct: 440 KLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPG 499

Query: 450 FSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKEN 509
            S IE+   +H+F   D+ H K +EIY  L +I  +IK +GY   T+ VL D+ E EKE 
Sbjct: 500 ISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQ 559

Query: 510 ALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFH 569
           +L  HSE+LA+A+GLIST   + +++FKNLR+C DCH V KLISK+  R+I++RDR RFH
Sbjct: 560 SLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFH 619

Query: 570 RFKDGACSCKDYW 582
            F DG+CSC D+W
Sbjct: 620 HFTDGSCSCGDFW 632


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/557 (42%), Positives = 350/557 (62%), Gaps = 13/557 (2%)

Query: 35   FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
            F++ LF V S +I+ Y  S   +L  A ALF +I   +   + +++ G   + +  NA+L
Sbjct: 2046 FETDLF-VSSALIDMY--SKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 2102

Query: 95   WYRQMLRGSHRS--------DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLG 146
             ++  L              D++     L AC+RV     T  +H  V++ GF     +G
Sbjct: 2103 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVG 2162

Query: 147  TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
             TL+D YAK G+ + +KKVFD M  +D  SWN++IA  AQ  L+ EA+++F  M      
Sbjct: 2163 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 2222

Query: 207  KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            + N VT+   L AC H GA + G  IH+ + +  L+ NV V  ++IDMY KCG ++ A +
Sbjct: 2223 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 2282

Query: 267  VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
             FD +K  K++ +W  MV  + +HG    AL++F +M RAGVKP+ +++++ L AC+HAG
Sbjct: 2283 TFDRMK-EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAG 2341

Query: 327  LVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
            LV++G   FN+M +   ++P ++HYG +VDL GRAG L EA +++K + M  D V+W +L
Sbjct: 2342 LVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSL 2401

Query: 386  LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
            LGAC+++ +V++ EIA++KL E+  +NCG +VLLSNLYA   RW DV R+R  MKNR + 
Sbjct: 2402 LGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLV 2461

Query: 446  KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
            K PGFS +E+ G +H F   DK H     IY+ L+++  ++++ GY    + VLHD+ EE
Sbjct: 2462 KPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEE 2521

Query: 506  EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
            EKE  L  HSEKLAVAFG+++++  T+I + KNLR+C DCH VIKLISK+ +R+ +VRD 
Sbjct: 2522 EKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDS 2581

Query: 566  VRFHRFKDGACSCKDYW 582
             RFH FKDG CSC DYW
Sbjct: 2582 KRFHHFKDGVCSCGDYW 2598



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 201/399 (50%), Gaps = 43/399 (10%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LLQ C +       H++Q+ A +  +G    +L  +  K+I  Y  S    +AYA  LF 
Sbjct: 33  LLQNCKN-----FKHLRQIHAKIIRSGLSNDQL--LTRKLIHLY--STHGRIAYAILLFY 83

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           QI  P T  +N ++R    +     A++ Y+ M+     +D  T  F +KAC   L++  
Sbjct: 84  QIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDL 143

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVG----------------------------- 157
              +H  ++++GF  D  +   L+D Y K G                             
Sbjct: 144 GKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLIS 203

Query: 158 --EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG 215
             ++  A+++FDE+  +++ SW A+I G  +     EA++LFKRM+ E +F PNE T++ 
Sbjct: 204 CGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIF-PNEYTMVS 262

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            + AC  +G    G  IH+Y  +  +++ V +  A+IDMY+KCG +  A EVF+ +  RK
Sbjct: 263 LIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RK 321

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
           SL TWN+M+ +  VHG G  AL LF +M R  VKPD ++++  LCAC H   V +G   F
Sbjct: 322 SLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYF 381

Query: 336 NSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
             M  + G+ P  +HY  + +L  R+  L EA    K V
Sbjct: 382 TRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 156/311 (50%), Gaps = 9/311 (2%)

Query: 64   LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
             ++ ++  + + +N+V+  LA       A+  +  + +        +    +K+C+ +  
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 2030

Query: 124  LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
            L      H      GF  D  + + L+D+Y+K G++  A+ +FDE+ +R++ SW ++I G
Sbjct: 2031 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 2090

Query: 184  LAQGNLASEAVDLFKRMKME------GVFKP-NEVTVLGALAACGHLGAWKEGDKIHEYI 236
              Q   A  A+ LFK    E      G   P + V ++  L+AC  +      + +H ++
Sbjct: 2091 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 2150

Query: 237  REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
             ++  D ++ V N ++D YAKCG    + +VFD ++  K  ++WN+M+  +A  G    A
Sbjct: 2151 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWME-EKDDISWNSMIAVYAQSGLSGEA 2209

Query: 297  LELFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
            LE+F  M R  GV+ + V+  A L AC HAG +  G  + + +    ++ N+    S++D
Sbjct: 2210 LEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIID 2269

Query: 356  LLGRAGRLQEA 366
            +  + GR++ A
Sbjct: 2270 MYCKCGRVEMA 2280


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/584 (40%), Positives = 359/584 (61%), Gaps = 12/584 (2%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLN-ELAY 60
           ++L + L KC+S   +  I    ++ HL    Q       + +K+I     +P    + Y
Sbjct: 27  SSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQ-------ILTKLINSCTQNPTTASMDY 79

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH LF  I  P    FN++ RG + S+ P  A+  + + L  +   D  T    LKAC  
Sbjct: 80  AHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVV 139

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             A  +  Q+H   ++ G   +  +  TL+++YA   ++  A++VFDE+    + S+NA+
Sbjct: 140 AKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAI 199

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G A+ +  +EA+ LF++++   + KPN+VTVL  L++C  LGA   G  IHEY+++  
Sbjct: 200 ITGYARSSRPNEALSLFRQLQARKL-KPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNG 258

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           LD  V V  A+IDMYAKCG LD A  VF+++  R +   W+ M++A+A+HG G   + +F
Sbjct: 259 LDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDT-QAWSAMIVAYAMHGQGQDVMSMF 317

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGR 359
           E+M RA V+PD++++L  L AC+H GLVD+G R F SM+   G+ P +KHYG +VDLLGR
Sbjct: 318 EEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGR 377

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L EA   +  + +    +LW+TLL +C  +G++E+A+    +++E+  ++ GD+V+L
Sbjct: 378 AGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVIL 437

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SNL A   +W+DV  +RK M ++   K+PG S IEV  V+H+FF+ D  H     ++  L
Sbjct: 438 SNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRAL 497

Query: 480 DEIMFKIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           DE++ ++K  GY   TS V+H D+ +EEKE  L YHSEKLA++FGL++T   T+I+V KN
Sbjct: 498 DELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKN 557

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH   KLIS + +REII+RD  RFH FKDG CSC DYW
Sbjct: 558 LRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/577 (39%), Positives = 370/577 (64%), Gaps = 9/577 (1%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +L+ CS   A+S    +Q+ A +   G F S  F V++ +I  YA     E+  A  +F 
Sbjct: 130 ILKVCSRLQALSEG--EQIHALIMKCG-FGSHGF-VKNTLIHMYA--NCGEVEVARRVFD 183

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           +++  +   +N++  G   S      V  + +ML    R D +T    L AC R+  L  
Sbjct: 184 EMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLEL 243

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
              I+ +V   G   +  L T+L+D+YAK G++ +A+++FD+M  RD+ +W+A+I+G +Q
Sbjct: 244 GEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQ 303

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
            +   EA+DLF  M+   +  PNE+T++  L++C  LGA + G  +H +I+++R+ + V 
Sbjct: 304 ASRCREALDLFHEMQKANI-DPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVT 362

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           +  A++D YAKCG ++ + EVF  +   K++++W  ++   A +G G +ALE F  M   
Sbjct: 363 LGTALMDFYAKCGSVESSIEVFGKMPV-KNVLSWTVLIQGLASNGQGKKALEYFYLMLEK 421

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQE 365
            V+P+DV+++  L AC+HAGLVD+G  LF SM+ + G++P ++HYG +VD+LGRAG ++E
Sbjct: 422 NVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEE 481

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A   +K++ +  + V+W+TLL +C+++ +VE+ E + ++L+ +   + GD++LLSN+YA+
Sbjct: 482 AFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYAS 541

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
             RW+D  +VR  MK + +KK PG S IE+ GVIH+FF  D  H +  EIY  ++++M +
Sbjct: 542 VGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQ 601

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           IK  GY   T+    D  E++KE+++ +HSEKLA+AFGLI +   T+I++ KNLR+C DC
Sbjct: 602 IKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDC 661

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H+  KL+SKV+NREI+VRDR RFH FK+G+CSC DYW
Sbjct: 662 HNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 206/381 (54%), Gaps = 12/381 (3%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFP-VRSKIIEFYALSPLNELAYAHALF 65
           +L++C +   ++ IH     AHL  T      L P V   ++E  A+     + YA ++F
Sbjct: 30  ILEQCKTIRDLNEIH-----AHLIKTRLL---LKPKVAENLLESAAILLPTSMDYAVSIF 81

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           RQI+ P +  +N ++RG      P  A+L +++M   S + D  T    LK C+R+ AL 
Sbjct: 82  RQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALS 141

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E  QIH+ +++ GF +   +  TL+ +YA  GE+  A++VFDEM  R++ +WN++ AG  
Sbjct: 142 EGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYT 201

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           +     E V LF  M +E   + +EVT++  L ACG L   + G+ I+ Y+ E+ L  N 
Sbjct: 202 KSGNWEEVVKLFHEM-LELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNP 260

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            +  +++DMYAKCG +D A  +FD +  R+ +V W+ M+  ++       AL+LF +M +
Sbjct: 261 TLITSLVDMYAKCGQVDTARRLFDQMD-RRDVVAWSAMISGYSQASRCREALDLFHEMQK 319

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           A + P++++ ++ L +C   G ++ G  +   +    +K  +    +++D   + G ++ 
Sbjct: 320 ANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVES 379

Query: 366 ACDIVKSVSMGTDMVLWQTLL 386
           + ++   + +  +++ W  L+
Sbjct: 380 SIEVFGKMPV-KNVLSWTVLI 399


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/542 (41%), Positives = 342/542 (63%), Gaps = 5/542 (0%)

Query: 44   SKIIEFYALS--PLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
            S+I+  +A+     N +  A  +F  I  P +  +N ++RG A   +  +++  Y +M+ 
Sbjct: 752  SRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMME 811

Query: 102  GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
               + D     FALK+CA +  L     IH H++  G   D  +   L+D+YAK G+I +
Sbjct: 812  KGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEA 871

Query: 162  AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
            A+ VFD+M VRD+ SW ++I+G A     SE +  F  M+  GV  PN V++L  L ACG
Sbjct: 872  ARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI-PNRVSILSVLLACG 930

Query: 222  HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            +LGA ++G+  H Y+ +   + +++V  A++DMY+KCG LD A  +FD     K LV W+
Sbjct: 931  NLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDE-TAGKDLVCWS 989

Query: 282  TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN- 340
             M+ ++ +HG G +A++LF+QM +AGV+P  V++   L AC+H+GL+++G   F  M   
Sbjct: 990  AMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEE 1049

Query: 341  CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
              +   + +Y  +VDLLGRAG+L EA D+++++ +  D  +W +LLGAC+++ ++++AE 
Sbjct: 1050 FVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEK 1109

Query: 401  ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
             +  L  +   + G  VLLSN+YAA  RW++V +VRK M  R   K+ GFS +E    +H
Sbjct: 1110 IADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVH 1169

Query: 461  KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            KF   D+SH +W ++Y KL+E+   +K  GY   T  VLHDI EE KE AL YHSE+LA+
Sbjct: 1170 KFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAI 1229

Query: 521  AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
            AFGLI+TS  T++++ KNLRIC DCH+ IKLISK+ NR I+VRD  RFHRF+DG CSC D
Sbjct: 1230 AFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGD 1289

Query: 581  YW 582
            YW
Sbjct: 1290 YW 1291



 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 150/466 (32%), Positives = 275/466 (59%), Gaps = 6/466 (1%)

Query: 40  FPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM 99
            P+ + ++  YA +   ++A    LF ++       ++ ++   A++     A+  + +M
Sbjct: 241 LPLVNSLLNLYAKTGCEKIA--ANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEM 298

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
           +      +++T   AL+ACA    L E  +IH   +  GF  D  + T L+D+Y K    
Sbjct: 299 IEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCP 358

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
             A  +F  +  +D+ SW AL++G AQ  +A +++ +F+ M  +G+ +P+ V V+  LAA
Sbjct: 359 DEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGI-QPDAVAVVKILAA 417

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
              LG +++   +H Y+     + NV V  ++I++Y+KCG L  A ++F  +  R  +V 
Sbjct: 418 SSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVI 476

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           W++M+ A+ +HG G  ALE+F+QM + + V+P++V++L+ L AC+HAGLV++G+++F+ M
Sbjct: 477 WSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRM 536

Query: 339 A-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
             +  ++P+ +H+G +VDLLGR G+L +A DI+  + +     +W  LLGAC+++ ++EM
Sbjct: 537 VHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEM 596

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
            E A++ L  +  ++ G ++LLSN+YA   +WD+V  +R  +K R +KK+ G S +EV G
Sbjct: 597 GEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRG 656

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIG 503
            +H F  SD+ H   ++IYE L ++  ++ +  Y      +LHD G
Sbjct: 657 GVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHDTG 702



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 180/382 (47%), Gaps = 13/382 (3%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           L Q C++  +VS +H +  +  +     F +KL  + +K     A         A  +F 
Sbjct: 10  LFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQA---------ARKVFD 60

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALF 125
           +   P+ + +N+ LR      +    +  +  M+       D  T   ALKACA +  L 
Sbjct: 61  ETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLE 120

Query: 126 ETLQIHSHVLRHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               IH    ++  + +D  +G+ L+++Y+K G++  A KVF+E    D   W +++ G 
Sbjct: 121 LGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGY 180

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
            Q N   EA+ LF +M M      + VT++  ++AC  L   K G  +H  +     D +
Sbjct: 181 QQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGD 240

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + + N+++++YAK G    A  +F  +   K +++W+TM+  +A +     AL LF +M 
Sbjct: 241 LPLVNSLLNLYAKTGCEKIAANLFSKMP-EKDVISWSTMIACYANNEAANEALNLFHEMI 299

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
               +P+ V+ ++AL AC  +  +++G ++       G + +     +++D+  +     
Sbjct: 300 EKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPD 359

Query: 365 EACDIVKSVSMGTDMVLWQTLL 386
           EA D+ + +    D+V W  LL
Sbjct: 360 EAVDLFQRLP-KKDVVSWVALL 380


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/559 (40%), Positives = 343/559 (61%), Gaps = 38/559 (6%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           ++ ++ ALF Q   P    F A +   + +     A L Y Q+L      +  T S  LK
Sbjct: 77  KIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILK 136

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR---- 172
           +C+          IH+HVL+ G   D  + T L+D+YAK G++VSA+KVFD M  R    
Sbjct: 137 SCSTKSGKL----IHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVS 192

Query: 173 ---------------------------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
                                      DI SWN +I G +Q    S+A+ LF+++  +G 
Sbjct: 193 STAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGK 252

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
            KP+E+TV+ AL+AC  +GA + G  IH ++   R+ +NV VC A+IDMY+KCG L++A 
Sbjct: 253 PKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAV 312

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNH 324
            VF++   RK +V WN M+  +A+HG    AL LF++M G  G++P D++++  L AC H
Sbjct: 313 LVFNDTP-RKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAH 371

Query: 325 AGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
           AGLV++G+++F SM    G+KP ++HYG +V LLGRAG+L+ A +I+K+++M  D VLW 
Sbjct: 372 AGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWS 431

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443
           ++LG+C+L+G+  + +  +  L+    +N G +VLLSN+YA    ++ V +VR  MK + 
Sbjct: 432 SVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKG 491

Query: 444 VKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIG 503
           + K PG S IE+   +H+F   D+ H+K +EIY  L ++  +IK +GY   T+ VLHD+ 
Sbjct: 492 IVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLE 551

Query: 504 EEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
           E EKE +L  HSE+LA+A+GLIST   + +++FKNLR+C DCH V KLISK+  R+I++R
Sbjct: 552 ETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMR 611

Query: 564 DRVRFHRFKDGACSCKDYW 582
           DR RFH F DG+CSC D+W
Sbjct: 612 DRNRFHHFSDGSCSCDDFW 630



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 40/302 (13%)

Query: 126 ETLQIHSHVLRHGFLADA---LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           E LQIH+ +LRH  L      +L   L   YA  G+I  +  +F +    D+  + A I 
Sbjct: 42  EVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAIN 101

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
             +   L  +A  L+ ++ +     PNE T    L +C    + K G  IH ++ +  L 
Sbjct: 102 TASINGLKDQAFLLYVQL-LSSQINPNEFTFSSILKSC----STKSGKLIHTHVLKFGLG 156

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK------------------------------ 272
           ++  V   ++D+YAK G +  A +VFD +                               
Sbjct: 157 LDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRM 216

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDG 331
           C + +V+WN M+  ++ HG    AL LF+++   G  KPD+++ +AAL AC+  G ++ G
Sbjct: 217 CERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETG 276

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             +   + +  ++ N+K   +++D+  + G L+EA  +V + +   D+V W  ++    +
Sbjct: 277 RWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAV-LVFNDTPRKDIVAWNAMITGYAM 335

Query: 392 YG 393
           +G
Sbjct: 336 HG 337


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/561 (41%), Positives = 357/561 (63%), Gaps = 7/561 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQL  H T  G F S  + +++ ++  Y  S    L  A  +F ++   S   +  ++  
Sbjct: 157 KQLHCHSTKLG-FASDAY-IQNTLMNMY--SNCGCLVSARKVFDKMVNKSVVSWATMIGA 212

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A    P  A+  +R+M   S + + +T    L ACAR   L    Q+H ++   G    
Sbjct: 213 YAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFH 272

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
            +L + L+DVY K G    A+ +F++M  +++  WN +I G  + +   EA+ LF  M++
Sbjct: 273 TVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQL 332

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            GV K ++VT+   L AC HLGA + G  +H YI +E+++++V +  A++DMYAKCG ++
Sbjct: 333 SGV-KGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIE 391

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VF  +   K ++TW  +++  A+ G G +ALELF +M  + VKPD ++++  L AC
Sbjct: 392 SAMRVFQEMP-EKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAAC 450

Query: 323 NHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +HAGLV++G+  FNSM N  G++P+++HYG +VD+LGRAGR+ EA D+++++ M  D  +
Sbjct: 451 SHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFV 510

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
              LL AC+++G++ +AE A+++L+E+   N G +VLLSN+Y++ + W+   ++R+ M  
Sbjct: 511 LVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVE 570

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           R++KK PG S IEVGGV+H+F   D SH +  EIYE LD++M ++K  GY    S VL D
Sbjct: 571 RNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFD 630

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           + E+EKEN L  HSEKLA+AFGL+ST+  T I+V KNLR+C DCH  +K IS+VYNREII
Sbjct: 631 MDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREII 690

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRDR RFH F  G+CSC+D+W
Sbjct: 691 VRDRNRFHHFTKGSCSCRDFW 711



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/412 (30%), Positives = 215/412 (52%), Gaps = 23/412 (5%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQ 67
           L+KC++   +  IH + L+  L     F +      SKI+ F AL     L YA  +F Q
Sbjct: 47  LEKCTTMSQLKQIHAQMLRTCLFV-DPFSA------SKIVAFCALHDSGSLPYARLVFNQ 99

Query: 68  INAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET 127
           I  P+T   N+++RG  + + P  A+L+Y+ M+      D  T     K+C     L E 
Sbjct: 100 IPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCG---VLCEG 156

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
            Q+H H  + GF +DA +  TL+++Y+  G +VSA+KVFD+M  + + SW  +I   AQ 
Sbjct: 157 KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 216

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
           +L  EA+ LF+RM++  V KPNE+T++  L AC      +   ++H+YI E  +  + V+
Sbjct: 217 DLPHEAIKLFRRMEIASV-KPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVL 275

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
            +A++D+Y KCG    A ++F+ +   K+L  WN M+       D   AL LF +M  +G
Sbjct: 276 TSALMDVYCKCGCYPLARDLFNKMP-EKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSG 334

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
           VK D V+  + L AC H G ++ G  L   +    ++ ++    ++VD+  + G ++ A 
Sbjct: 335 VKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAM 394

Query: 368 DIVKSVSMGTDMVLWQTL----------LGACQLYGDVEMAEIASRKLVEMG 409
            + + +    D++ W  L          L A +L+ +++M+E+    +  +G
Sbjct: 395 RVFQEMP-EKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVG 445


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/563 (39%), Positives = 355/563 (63%), Gaps = 4/563 (0%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           ++QL AH+ T     S      SKI+ F ALSP   + YA ++F QI  P+   +N++++
Sbjct: 4   LRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIK 63

Query: 82  GLA--HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           G +  H+       L+ +    G    ++ T +F LKACA V A  E LQ+HSHVL+ GF
Sbjct: 64  GYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGF 123

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
            +   + T+L++ Y K  EI  A+KVF+EM VR++ +W A+I+G A+     EA++LF+ 
Sbjct: 124 GSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFRE 183

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+  G+ +P+ +T++  ++AC   GA   G  +H YI +  +  ++ +  A++DMYAKCG
Sbjct: 184 MQKAGI-QPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCG 242

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            +++A +VF ++   K    W++M+M FA HG    A++ F+QM    V PD V++LA L
Sbjct: 243 CIERAKQVFVHMPV-KDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVL 301

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            AC H GLV  G R ++ M   G++P+++HYG  VDLL R+G ++EA  I  ++ +  + 
Sbjct: 302 SACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNA 361

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
             W++LL  C+    + + EI +R L+E+   N  +++++SNLY++  +W+ +  +RK M
Sbjct: 362 ATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVM 421

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           K + +K VPG S IEV GV+H+F   D+SH + + + E ++E+  ++++ GY    S VL
Sbjct: 422 KEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYRPSISDVL 481

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           H + +EEKE AL  HSE+ A+A+GL+ T     I+V KNLR+C DCH+VIK+ISK+Y RE
Sbjct: 482 HKVVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLYERE 541

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           IIVRDRVRFH+F  G CSCKD+W
Sbjct: 542 IIVRDRVRFHKFIKGTCSCKDFW 564


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/562 (41%), Positives = 358/562 (63%), Gaps = 8/562 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+  H T  G F S  +  ++ ++  Y  S    L  A  +F ++   +   +  ++  
Sbjct: 105 KQIHCHSTKLG-FASDTY-AQNTLMNMY--SNCGCLVSARKVFDKMEDKTVVSWATMIGV 160

Query: 83  LAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
            A   +P  AV  + +M++  + + + +T    L ACAR   L    +IH ++  HGF  
Sbjct: 161 HAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGR 220

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
             +L T L+DVY K G +  A+ +FD+   +++ SWN +I G  + +   EA+ LF+ M+
Sbjct: 221 HVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQ 280

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            +G+ K ++VT+   L AC HLGA + G  +H YI+++R+D++V +  A++DMYAKCG +
Sbjct: 281 TKGI-KGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSI 339

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           + A +VF  +   K ++TW  +++  A+ G    AL+ F++M   GVKPD ++++  L A
Sbjct: 340 ETAIQVFHEMP-EKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAA 398

Query: 322 CNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C+HAG VD+G+  FNSM++  G++P ++HYG +VD+LGRAGR+ EA +++KS+ M  D  
Sbjct: 399 CSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQF 458

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +   LLGAC+++G++E AE A+++L+E+   + G +VLLSN+Y + ++W++  R R+ M 
Sbjct: 459 VLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMA 518

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
            R ++K PG S IEV GV+H+F   D SH +  EI E L++++ K+K  GY    S VL 
Sbjct: 519 ERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLF 578

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           D+ EEEKE  L  HSEKLA+AFGL+STS  T I+V KNLRIC DCH   KLISK+YNREI
Sbjct: 579 DMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREI 638

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           IVRDR RFH FKDG CSC+ +W
Sbjct: 639 IVRDRNRFHHFKDGTCSCRGFW 660



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/378 (30%), Positives = 187/378 (49%), Gaps = 7/378 (1%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
            +KQ+ A +  TG F        SKI+ F +L     L YA  +F QI  P++   N+++
Sbjct: 3   QLKQIHAQMLRTGLFFDPF--TASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           RG    +    A+L+Y++M+      D  T     K+C       E  QIH H  + GF 
Sbjct: 61  RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNS---SEGKQIHCHSTKLGFA 117

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
           +D     TL+++Y+  G +VSA+KVFD+M  + + SW  +I   AQ +  +EAV LF RM
Sbjct: 118 SDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRM 177

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
                 KPNEVT++  L AC          +IHEYI E     +VV+   ++D+Y KCG 
Sbjct: 178 MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGC 237

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +  A ++FD  +  K+L +WN M+       +   AL LF +M   G+K D V+  + L 
Sbjct: 238 VQLARDLFDKAQ-EKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLL 296

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           AC H G ++ G  L   +    +  ++    ++VD+  + G ++ A  +   +    D++
Sbjct: 297 ACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMP-EKDVM 355

Query: 381 LWQTLLGACQLYGDVEMA 398
            W  L+    + G  E A
Sbjct: 356 TWTALILGLAMCGQAENA 373


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/564 (42%), Positives = 341/564 (60%), Gaps = 38/564 (6%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           + + L  L Y+ ALF +   PS   + A++ G A       A+ +Y QML      +A T
Sbjct: 71  SYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFT 130

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
            S  LK C     +     +HS  ++ GF +D  + T LLDVYA+ G++VSA+++FD M 
Sbjct: 131 FSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 186

Query: 171 VRDIAS-------------------------------WNALIAGLAQGNLASEAVDLFKR 199
            + + S                               WN +I G  Q  + +EA+ LF+R
Sbjct: 187 EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRR 246

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M ++   KPNEVTVL  L+ACG LGA + G  +H YI    +  NV V  A++DMY+KCG
Sbjct: 247 M-LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCG 305

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            L+ A  VFD I   K +V WN+M++ +A+HG    AL+LF+ M R G+ P +++++  L
Sbjct: 306 SLEDARLVFDKID-DKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGIL 364

Query: 320 CACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
            AC H+G V +G  +FN M +  G++P ++HYG +V+LLGRAG +++A ++VK++++  D
Sbjct: 365 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD 424

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
            VLW TLLGAC+L+G + + E     LV+    N G ++LLSN+YAA   WD V R+R  
Sbjct: 425 PVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTM 484

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           MK+  VKK PG S IEV   +H+F     +H K +EIY  L+EI   +K +GY   T  V
Sbjct: 485 MKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIV 544

Query: 499 LHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNR 558
           LHDIGE EKE +L  HSEKLA+AFGLI+T   T+I++ KNLR+C DCH+V KLISK+  R
Sbjct: 545 LHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGR 604

Query: 559 EIIVRDRVRFHRFKDGACSCKDYW 582
           +I+VRDR RFH F +G+CSC DYW
Sbjct: 605 KIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 142/309 (45%), Gaps = 30/309 (9%)

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
           LQIH+ + RHG     +L   L   YA +G +  +  +F       +  W A+I G A  
Sbjct: 47  LQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR 106

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG-------HLGAWKEGDKIHEYIREER 240
            L  +A++ + +M  +GV +PN  T    L  C        H  A K G     Y+R   
Sbjct: 107 GLHEQALNFYAQMLTQGV-EPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGL 165

Query: 241 LDM--------------------NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
           LD+                    ++V   A++  YAK G LD A  +FD ++ R   V W
Sbjct: 166 LDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDG-VCW 224

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           N M+  +  +G    AL LF +M +A  KP++V+ L+ L AC   G ++ G  + + + N
Sbjct: 225 NVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN 284

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            G++ N+    ++VD+  + G L++A  +   +    D+V W +++    ++G  + A  
Sbjct: 285 NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID-DKDVVAWNSMIVGYAMHGFSQEALQ 343

Query: 401 ASRKLVEMG 409
             + +  MG
Sbjct: 344 LFKSMCRMG 352


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/609 (40%), Positives = 366/609 (60%), Gaps = 41/609 (6%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA--- 63
           LL+ C+  GA      KQ+  H+   G  +S  F V + +I  YA +   EL YA     
Sbjct: 138 LLKSCAKVGATQEG--KQIHGHVLKLG-LESDPF-VHTSLINMYAQN--GELGYAELVFS 191

Query: 64  ----------------------------LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLW 95
                                       LF +I       +NA++ G A S +   A+ +
Sbjct: 192 KSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAF 251

Query: 96  YRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK 155
           +++M R +   +  T    L ACA+  +L     + S +  HG  ++  L   L+D+Y+K
Sbjct: 252 FQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSK 311

Query: 156 VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG 215
            G++  A+ +F+ +  +DI SWN +I G +  N   EA+ LF++M+   V +PN+VT + 
Sbjct: 312 CGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNV-EPNDVTFVS 370

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDM-NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
            L AC +LGA   G  IH YI ++ L + N  +  ++IDMYAKCG ++ A +VF  +K  
Sbjct: 371 ILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK-P 429

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           KSL +WN M+   A+HG    ALELF QM   G +PDD++++  L AC+HAGLV+ G + 
Sbjct: 430 KSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQC 489

Query: 335 FNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           F+SM  +  + P ++HYG ++DLLGRAG   EA  ++K++ M  D  +W +LLGAC+++G
Sbjct: 490 FSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHG 549

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           +VE+ E A++ L E+   N G +VLLSN+YA   RWDDV R+R  + ++ +KKVPG S I
Sbjct: 550 NVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSI 609

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           EV  V+H+F   DK H + ++IY+ LDEI   +++ G+   TS VL+D+ EE KE +L +
Sbjct: 610 EVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSH 669

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEKLA+AFGLIST   T+I++ KNLR+C +CH  IKLISK++NREII RDR RFH FKD
Sbjct: 670 HSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKD 729

Query: 574 GACSCKDYW 582
           G+CSC DYW
Sbjct: 730 GSCSCMDYW 738



 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 137/425 (32%), Positives = 230/425 (54%), Gaps = 45/425 (10%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           ++KQ+ + +  TG   ++     SK+IEF A+SP   L+YA  LF  I  P+   +N ++
Sbjct: 47  NLKQIHSQIIKTGLHNTQF--ALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMI 104

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           RG + SS P  A+ +Y +ML      ++ T  F LK+CA+V A  E  QIH HVL+ G  
Sbjct: 105 RGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLE 164

Query: 141 ADALLGTTLLDVYAKVGEI---------------VS----------------AKKVFDEM 169
           +D  + T+L+++YA+ GE+               VS                A+++F+E+
Sbjct: 165 SDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEI 224

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
            VRD  SWNA+IAG AQ     EA+  F+ MK   V  PNE T++  L+AC   G+ + G
Sbjct: 225 PVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANV-APNESTMVTVLSACAQSGSLELG 283

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
           + +  +I +  L  N+ + NA+IDMY+KCG LDKA ++F+ I C K +++WN M+  ++ 
Sbjct: 284 NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI-CEKDIISWNVMIGGYSH 342

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNM 347
                 AL LF +M ++ V+P+DV++++ L AC + G +D G  +  +      G+  N 
Sbjct: 343 MNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLT-NT 401

Query: 348 KHYGSVVDLLGRAGRLQEACDI---VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRK 404
             + S++D+  + G ++ A  +   +K  S+G+    W  ++    ++G   MA    R+
Sbjct: 402 SLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS----WNAMISGLAMHGHANMALELFRQ 457

Query: 405 LVEMG 409
           + + G
Sbjct: 458 MRDEG 462


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/614 (38%), Positives = 356/614 (57%), Gaps = 53/614 (8%)

Query: 18  SHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFN 77
           S  H+KQ+ +    TG   + +  +++KI+ F       ++ YA  LF  I  PS   +N
Sbjct: 26  SMYHLKQIHSRTIKTGIICNPI--IQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWN 83

Query: 78  AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
            + +G +  + P   V  Y +ML  + + D  T  F  K   R +AL    ++H HV+++
Sbjct: 84  IMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKY 143

Query: 138 GFLADALLGTTLLDVYA------------------------------------------- 154
           G  ++      L+++Y+                                           
Sbjct: 144 GLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAI 203

Query: 155 -----KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN 209
                  G++ +A+K F +M  RD  SW A+I G  + N   EA+ LF+ M+   + KP+
Sbjct: 204 VTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKI-KPD 262

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
           E T++  L AC  LGA + G+ I  YI + ++  +  V NA+IDMY KCG ++ A  +F+
Sbjct: 263 EFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFN 322

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
            +  R    TW  MV+  A++G G  AL +F QM +A V PD+V+Y+  L AC H G+VD
Sbjct: 323 TLPQRDKF-TWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVD 381

Query: 330 DGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +G + F SM A  G++PN+ HYG +VDLLG+AG L+EA +I+K++ M  + ++W  LLGA
Sbjct: 382 EGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGA 441

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448
           C+++ D EMAE A  +++E+  NN   +VL  N+YAA  +WD +  +R+ M +R +KK P
Sbjct: 442 CRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTP 501

Query: 449 GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKE 508
           G S IE+ G++H+F   D+SH + +EIY KL+++   +K  GY+  TS V  DI EE+KE
Sbjct: 502 GCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKE 561

Query: 509 NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
           NA+  HSEKLA+AFGLI++    +I++ KNLR+C DCH V KL+SKVY+RE+IVRDR RF
Sbjct: 562 NAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRF 621

Query: 569 HRFKDGACSCKDYW 582
           H F+ G+CSCKDYW
Sbjct: 622 HHFRHGSCSCKDYW 635


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/540 (42%), Positives = 348/540 (64%), Gaps = 6/540 (1%)

Query: 45  KIIEFYALSPLNELAYAHALFRQINAPSTNDF-NAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           K+I+F   S  +  A +  LF Q      +D  N+++R    S+K  ++V  Y QM +  
Sbjct: 80  KLIDFSVSS--HGFAASALLFTQFYGFIDSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNG 137

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
              D+ T    LK+ A++        IH  +++ GF ++  + T L+++Y     +  A+
Sbjct: 138 IFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDAR 197

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           +VFDE+  R+I SWNALI G     +  + +D+F+ M++ G  KP EVT++G L AC HL
Sbjct: 198 QVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGA-KPVEVTMVGVLLACAHL 256

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
           GA  +G  I +YI   RL +NV V  A+IDMYAKCG++D+A ++F  ++  K++ TWN +
Sbjct: 257 GALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRV-KNVYTWNVL 315

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CG 342
           +  +A++G G  AL+ F +M     KPD+V++L  LCAC H GLV++G   F SM    G
Sbjct: 316 ISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFG 375

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           ++P ++HYG +VDLLGRAG L EA  +++++SM  D ++W+ LLGAC+++G++++ E A 
Sbjct: 376 LRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAI 435

Query: 403 RKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKF 462
           +KL+E+  NN  ++VLL+NLYA  +RWD VG VR+ M  R V+KVPG S IE+  V+++F
Sbjct: 436 KKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEF 495

Query: 463 FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
             S+     + E+Y+ L ++  K+K  GY A T    +DI EEEKE++L YHSEKLA+AF
Sbjct: 496 VVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAF 555

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           GL+ +    ++++ KNLRIC+DCH   K++SKVY R+I VRDR RFH F  GACSCKDYW
Sbjct: 556 GLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/510 (42%), Positives = 335/510 (65%), Gaps = 9/510 (1%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHV 134
           +N ++RG + S  P  A++ Y  M+ +G    +  T  F L +CAR+ +L    ++HSH+
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 135 LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194
           ++HGF +D  +   L+ +Y+  G +  A+ +FDE  VRD+ S+N +I G A+ N    A+
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI-HEYIREERLDMNVVVCNAVID 253
            LF  M+       +EVT++  L+AC  LGA+  G ++ H+YI     + N ++  AV+D
Sbjct: 122 CLFGEMQ-----NSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMD 176

Query: 254 MYAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
           MYAKCG +D A E+F  + K  K+   +N+M+   A HG G  A+ +F ++   G+KPD+
Sbjct: 177 MYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDE 236

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
           V+++  LCAC H+GL+++G +LF SM N  G+KP M+HYG +VDLLGR G L+EA D+V+
Sbjct: 237 VTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQ 296

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDD 431
            +    + V+W+ LL AC+ +G+V++ EIA +KL+EM + +   +VLLSN+ A   +W++
Sbjct: 297 KMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEE 356

Query: 432 VGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGY 491
             +VRK M++  ++K PG+SYIE+GG IH+F  SDKSH + +EI   L ++  ++K  GY
Sbjct: 357 ARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGY 416

Query: 492 AAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKL 551
              T+ V+ DI EEEKE+ + YHSEKLA+AFGL+  S   +I++ KNLRIC DCH   KL
Sbjct: 417 VPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKL 476

Query: 552 ISKVYNREIIVRDRVRFHRFKDGACSCKDY 581
           +S++Y REI VRD +RFH F++G+CSC D+
Sbjct: 477 VSEIYGREITVRDTMRFHHFRNGSCSCMDF 506


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/563 (39%), Positives = 358/563 (63%), Gaps = 7/563 (1%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
            IKQ+ A +TTTG     +  V +K++  Y  +   +L  AH LF ++       ++ ++
Sbjct: 18  QIKQVHAQVTTTGIIHDLI--VANKLL--YMCAKHKDLVTAHLLFNKMEERDPVSWSVMI 73

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
            G   +         +R+++R   + D  +  F +KAC   + L     IHS VL++G  
Sbjct: 74  GGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLH 133

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
            D  + +TL+D+YAK G I +AK++FD M  +D+ +   +IAG A+    +E+  LF +M
Sbjct: 134 LDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQM 193

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           + +G F P++V ++  + AC  LGA  +   +H+Y+   R  ++V +  A+IDMYAKCG 
Sbjct: 194 RRDG-FVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGS 252

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +D + E+FD ++ +K++++W+ M+ A+  HG G  ALELF  M  +G+ P+ +++++ L 
Sbjct: 253 IDSSREIFDRME-QKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLY 311

Query: 321 ACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC+HAGLVDDG++LF+ M+ + GV+P++KHY  +VDLLGRAGRL +A  +++++ +  D 
Sbjct: 312 ACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDE 371

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
            +W   LGAC+++  V++AE A++ L+ + + N G ++LLSN+YA   RW DV ++R  M
Sbjct: 372 GIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLM 431

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
             R +KK+PG+++IEV  +I++F   D SH++  EIYE L  +  K++  GY   T+ VL
Sbjct: 432 AKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVL 491

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           HD+ EE K   L  HSEKLA+AFGLI+T + T I++ KNLR+C DCH   KL+S +  R+
Sbjct: 492 HDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRD 551

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           IIVRD  RFH FK+G CSC DYW
Sbjct: 552 IIVRDANRFHHFKEGICSCGDYW 574


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/611 (39%), Positives = 364/611 (59%), Gaps = 43/611 (7%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ++++ C++   +  IH + L   L    Q   +        +   AL+  N L Y++ + 
Sbjct: 14  SMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQF-------VASIALNNPNNLHYSNQVL 66

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR--GSHRSDALTCSFALKACARVLA 123
                P+   FN+++R  + SS P  +  +Y ++L   G    D  T +F ++  A++LA
Sbjct: 67  DNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLA 126

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYA----------------------------- 154
                 +H   +++GF  D  + + L+ +YA                             
Sbjct: 127 HGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSA 186

Query: 155 --KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
             K+G++  A+K+FD+M  +D  +WNA+I+G  Q   + EA+ LF  M+ EGV K NEV+
Sbjct: 187 CAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGV-KVNEVS 245

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           ++  L+AC HLGA  +G   H YI   +L M + +  A+IDMYAKCG ++KA EVF  +K
Sbjct: 246 MVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMK 305

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K++ TW++ +   A++G G + LELF  M +  V+P+++++++ L  C+  GLV++G 
Sbjct: 306 -EKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGR 364

Query: 333 RLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           + F SM+   G++P ++HYG +VDL GRAG L EA + + S+ +   +  W  LL AC++
Sbjct: 365 KHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKI 424

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           Y ++EM E+ASRK+VE+ + N G +VLLSN+YA  + WD V  VR+ M  + V+K PG S
Sbjct: 425 YRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCS 484

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
            IEVGG +H+FF  DKSH ++ EI   L EI  ++K  GY A T+ V  DI EEEKE+AL
Sbjct: 485 VIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDAL 544

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
           C HSEK+A+AFGLIS S    I++ KNLR+C DCHD  K+ISK +NREI+VRDR RFH F
Sbjct: 545 CMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHF 604

Query: 572 KDGACSCKDYW 582
           +DG CSCK YW
Sbjct: 605 RDGECSCKGYW 615


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/577 (38%), Positives = 361/577 (62%), Gaps = 9/577 (1%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           L++KC S      +H++ L+      G F        S ++   ALS  N + YA ++F+
Sbjct: 38  LVKKCKSLEEFKQVHVQILK-----FGLFLDSF--CSSSVLATCALSDWNSMDYACSIFQ 90

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           Q++ P+T DFN ++RG  ++    NA+  Y  ML+     D  T    LKACAR+  + E
Sbjct: 91  QLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQE 150

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
            +QIH HV + G   D  +  +L+++Y K  +I  +  +F  M  + +ASW+A+IA  A 
Sbjct: 151 GMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHAS 210

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
             +  E + LF+ M  EG ++  E  ++  L+AC HLGA+  G   H  + +   ++NV 
Sbjct: 211 LAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVA 270

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V  +++DMY KCG L K   +F N+  RK+ ++++ ++    +HG G +AL++F +M   
Sbjct: 271 VMTSLMDMYVKCGSLQKGLCLFQNMT-RKNQLSYSVIISGLGLHGYGRQALQIFSEMVEE 329

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQE 365
           G++PDDV+Y++ L AC+H+GLVD+G+ LF+ M     ++P M+HYG +VDL GRAG L+E
Sbjct: 330 GLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEE 389

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A  +V+S+ +  + VLW++LL AC+++ ++++ EIA+  L  + S+N  D+++LSN+YA 
Sbjct: 390 AFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYAR 449

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
            ++W++  ++R  M NR + + PG+S +EV   ++KF + DKS+ K   IY+ + ++ ++
Sbjct: 450 AQQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQ 509

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           ++  GY   TS V+ D+ EEEK   L  HS+KLA+AF LI TS+ ++I++ +NLR+C DC
Sbjct: 510 LRFEGYMPDTSQVMLDVDEEEKGERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDC 569

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H   KL+S +Y REI VRDR RFH FKDG CSC+DYW
Sbjct: 570 HSYTKLVSMIYEREITVRDRNRFHHFKDGNCSCRDYW 606


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/582 (39%), Positives = 362/582 (62%), Gaps = 10/582 (1%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
            +L A +++C+  G      +K +QAH+      Q     + SK+IE  A++    +AYA
Sbjct: 8   GSLVAAIKRCTRVG-----DLKAIQAHMVRANLTQDTF--LTSKLIESSAVTLSGHVAYA 60

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
           H +F   + P+   +N ++RG + S  P  A+  YR M       ++ T  F LKAC ++
Sbjct: 61  HRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKL 120

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
           L L E  ++HS +++ G   +  L   L+ +YA  G +  A  +FDEM   D ASW+ ++
Sbjct: 121 LRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMV 180

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           +G AQ   A EA+ LF+ M+ E V   +  T+   +  CG LGA   G  +H Y+ +E +
Sbjct: 181 SGYAQNGQAVEALKLFREMQAENV-SSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGV 239

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
            ++VV+  A++ MY+KCG LD A +VF  +   + +  W+TM+  +A+HG G +AL+LF+
Sbjct: 240 KIDVVLGTALVGMYSKCGSLDNALKVFQGMA-ERDVTAWSTMIAGYAIHGHGEKALQLFD 298

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRA 360
            M R+   P+ V++ + L AC+H+GLV+ G ++F +M     + P +KHYG +VDL  RA
Sbjct: 299 AMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRA 358

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G +  A   ++++ +  ++VLW+TLLGAC+ +G  ++ E  SRK++++  ++  ++VL+S
Sbjct: 359 GMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVS 418

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA+  RW  V +VR  MK++  KK  G+S IE+  ++HKF   D+SH +  +IY  L 
Sbjct: 419 NVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLH 478

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           ++  K+K+ G+   T  VLHDI EEEKE AL  HSE+LA+A+GL+ T   + I++ KNLR
Sbjct: 479 QMARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLR 538

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +CRDCH+VIKLIS+VYNREIIVRDRVRFH F++  CSC DYW
Sbjct: 539 VCRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/613 (39%), Positives = 366/613 (59%), Gaps = 57/613 (9%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           +KQL A    TGQ Q  L    +++I+F A S   ++ YA A+FRQ+  P+   +N +LR
Sbjct: 35  LKQLHAIFIKTGQIQDPL--TAAEVIKFCAFSS-RDIDYARAVFRQMPEPNCFCWNTILR 91

Query: 82  GLAHSSKP---TNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
            LA ++     + A++ +  ML  G  + +  T    LKACAR   L E  QIH  +++ 
Sbjct: 92  ILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKF 151

Query: 138 GFLADALLGTTLLDVYA------------------------------------------- 154
           GF  D  + + L+ +Y                                            
Sbjct: 152 GFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMI 211

Query: 155 ----KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE 210
               ++G+I SAK +FDEM  R + SWN +I+G AQ     EA++LF+ M+   +  PN 
Sbjct: 212 DGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNI-DPNY 270

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
           VT++  L A   +GA + G  IH Y  + +++++ V+ +A++DMY+KCG +DKA +VF+ 
Sbjct: 271 VTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFET 330

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
           +  R + +TW+ ++ AFA+HG    A+  F  MG+AGV P+DV+Y+  L AC+HAGLV++
Sbjct: 331 LPKRNA-ITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEE 389

Query: 331 GVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           G   F+ M    G++P ++HYG +VDLLGRAG L+EA ++++++ +  D V+W+ LLGAC
Sbjct: 390 GRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGAC 449

Query: 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPG 449
           +++ +++M E  +  L+E+  ++ G +V LSNLYA+   W+ V RVR  MK  D++K PG
Sbjct: 450 KMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPG 509

Query: 450 FSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKEN 509
            S+IE+ G+IH+F   D SH K +EI   L E+  K++  GY   T  V  +  E+E+  
Sbjct: 510 CSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERAR 569

Query: 510 ALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFH 569
           AL YHSEK+AVAFGLIST+    +++ KNLRIC DCH  +KLIS +Y R+IIVRDR RFH
Sbjct: 570 ALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFH 629

Query: 570 RFKDGACSCKDYW 582
           +F+ G+CSC DYW
Sbjct: 630 QFEHGSCSCMDYW 642


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/495 (45%), Positives = 314/495 (63%), Gaps = 5/495 (1%)

Query: 91  NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150
           N +  Y +ML  S   +  T    ++AC    A+ E  QIH+HVL+ GF AD      L+
Sbjct: 77  NCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLI 136

Query: 151 DVYAKVGEIVSAKKVFDEMGVRD--IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
            +Y     +  A++VFD M  RD    SWNA+IA   Q N   EA  LF RM++E V   
Sbjct: 137 HMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVL- 195

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           ++      L+AC  LGA ++G  IH YI +  ++++  +   VIDMY KCG L+KA EVF
Sbjct: 196 DKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVF 255

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
           + +  +K + +WN M+   A+HG G  A+ELF++M R  V PD ++++  L AC H+GLV
Sbjct: 256 NELP-QKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLV 314

Query: 329 DDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           ++G   F  M    G+KP M+H+G +VDLLGRAG L+EA  ++  + +  D  +   L+G
Sbjct: 315 EEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVG 374

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           AC+++G+ E+ E   +K++E+  +N G +VLL+NLYA+  RW+DV +VRK M +R VKK 
Sbjct: 375 ACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKA 434

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
           PGFS IE    + +F    ++H + +EIY KLDEI+  I+  GY   T  VLHDI EEEK
Sbjct: 435 PGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEK 494

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           EN L YHSEKLA+AFGL+ T    ++++ KNLRICRDCH   KLISKVY+REII+RDR R
Sbjct: 495 ENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNR 554

Query: 568 FHRFKDGACSCKDYW 582
           FH F+ G CSCKDYW
Sbjct: 555 FHHFRMGGCSCKDYW 569


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/609 (39%), Positives = 368/609 (60%), Gaps = 52/609 (8%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           +KQL A +  T Q +  L    ++++ F A+S   +L YA  +FR ++ P+   +N ++R
Sbjct: 27  LKQLHAQMIKTAQIRDPL--AAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIR 84

Query: 82  GLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFALKACARVLALFETLQIH--------- 131
            L+ S+ P +A+L + +M+   S   +  T     KAC R   L E  Q+H         
Sbjct: 85  ALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLD 144

Query: 132 ------SHVLRH----GFLADA---------------------------LLGTTLLDVYA 154
                 S+V+R     G + DA                           +L   ++D Y 
Sbjct: 145 SDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYV 204

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           ++GE+  A+ +FDEM  R + SWN +IAG AQ     EAV++F+ M+M  V  PN VT++
Sbjct: 205 RIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEV-PPNYVTLV 263

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L A   LGA + G  +H Y     + ++ V+ +A+IDMYAKCG ++KA +VF+ +  +
Sbjct: 264 SVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLP-K 322

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           +++VTW+T++   A+HG     L+ FE M RAGV P DV+Y+  L AC+HAGLV++G   
Sbjct: 323 RNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWF 382

Query: 335 FNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           F+ M    G++P ++HYG +VDLLGRAG L+E+ +++ ++ +  D V+W+ LLGAC+++G
Sbjct: 383 FDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHG 442

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           +VEM +  +  L+E+  ++ G +V LSN+YA+   W+ V +VR  MK  DV+K PG S+I
Sbjct: 443 NVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWI 502

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           E+ GVIH+F   D SH K ++I+  L E+   +   GY   T+ VL ++ EE+KE++L Y
Sbjct: 503 ELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNY 562

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEK+A+AFGLIST   T +++ KNLRIC DCH  IKLISK+Y R+IIVRDR RFH F +
Sbjct: 563 HSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVN 622

Query: 574 GACSCKDYW 582
           G+CSC DYW
Sbjct: 623 GSCSCMDYW 631


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/588 (39%), Positives = 363/588 (61%), Gaps = 12/588 (2%)

Query: 4   LNALLQKC----SSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA 59
           L  +++KC     + G  S   ++Q+ A     G   S     +  I    +L     ++
Sbjct: 11  LLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMS 70

Query: 60  YAHALFRQINAPSTNDF--NAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALK 116
           YAH +F +I  P  N F  N ++RG A      +A   YR+M + G    D  T  F +K
Sbjct: 71  YAHKVFSKIEKP-INVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIK 129

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           A   +  +     IHS V+R GF +   +  +LL +YA  G++ SA KVFD+M  +D+ +
Sbjct: 130 AVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA 189

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN++I G A+     EA+ L+  M  +G+ KP+  T++  L+AC  +GA   G ++H Y+
Sbjct: 190 WNSVINGFAENGKPEEALALYTEMNSKGI-KPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +  L  N+   N ++D+YA+CG +++A  +FD +   K+ V+W ++++  AV+G G  A
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNGFGKEA 307

Query: 297 LELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVV 354
           +ELF+ M    G+ P +++++  L AC+H G+V +G   F  M     ++P ++H+G +V
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMV 367

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLL RAG++++A + +KS+ M  ++V+W+TLLGAC ++GD ++AE A  +++++  N+ G
Sbjct: 368 DLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSG 427

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
           D+VLLSN+YA+ +RW DV ++RK M    VKKVPG S +EVG  +H+F   DKSH +   
Sbjct: 428 DYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDA 487

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY KL E+  +++  GY    S V  D+ EEEKENA+ YHSEK+A+AF LIST E + I 
Sbjct: 488 IYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPIT 547

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V KNLR+C DCH  IKL+SKVYNREI+VRDR RFH FK+G+CSC+DYW
Sbjct: 548 VVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/561 (40%), Positives = 343/561 (61%), Gaps = 5/561 (0%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K + A++      +    P  + +++ YA      L  A  LF  +   +   + A++ G
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYA--KCGHLGLARQLFNGLTQKTVVSWTAMIAG 272

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              S++       + +M   +   + +T    +  C    AL    Q+H+++LR+GF   
Sbjct: 273 CIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVS 332

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             L T L+D+Y K  +I +A+ +FD    RD+  W A+++  AQ N   +A +LF +M+ 
Sbjct: 333 LALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRT 392

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            GV +P +VT++  L+ C   GA   G  +H YI +ER++++ ++  A++DMYAKCG ++
Sbjct: 393 SGV-RPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDIN 451

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  +F     R  +  WN ++  FA+HG G  AL++F +M R GVKP+D++++  L AC
Sbjct: 452 AAGRLFIEAISR-DICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHAC 510

Query: 323 NHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +HAGLV +G +LF  M +  G+ P ++HYG +VDLLGRAG L EA +++KS+ +  + ++
Sbjct: 511 SHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIV 570

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W  L+ AC+L+ + ++ E+A+ +L+E+   NCG  VL+SN+YAA  RW D   VRK MK 
Sbjct: 571 WGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKT 630

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
             +KK PG S IEV G +H+F   D+SH + R I E L E+  K+ E GY   TS VL +
Sbjct: 631 VGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLN 690

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           I EEEKE AL YHSEKLA+AFGLIST+ +T I++ KNLR+C DCH   KL+SK+Y R II
Sbjct: 691 IDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVII 750

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRDR RFH F++G CSC DYW
Sbjct: 751 VRDRNRFHHFREGYCSCGDYW 771



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 134/276 (48%), Gaps = 5/276 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           LKAC +V       +IH  VL+ G   D  +G  L+ +Y +   +  A+ VFD+M  RD+
Sbjct: 101 LKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDV 160

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW+ +I  L++      A++L + M    V +P+EV ++  +         + G  +H 
Sbjct: 161 VSWSTMIRSLSRNKEFDMALELIREMNFMQV-RPSEVAMVSMVNLFADTANMRMGKAMHA 219

Query: 235 YI--REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           Y+        M V    A++DMYAKCG L  A ++F+ +  +K++V+W  M+        
Sbjct: 220 YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLT-QKTVVSWTAMIAGCIRSNR 278

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
                +LF +M    + P++++ L+ +  C   G +  G +L   +   G   ++    +
Sbjct: 279 LEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATA 338

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +VD+ G+   ++ A  +  S +   D+++W  +L A
Sbjct: 339 LVDMYGKCSDIRNARALFDS-TQNRDVMIWTAMLSA 373


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/588 (39%), Positives = 365/588 (62%), Gaps = 12/588 (2%)

Query: 4   LNALLQKC----SSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA 59
           L  +++KC     + G  S   ++Q+ A     G   S     +  I    +L     ++
Sbjct: 11  LLPMVEKCINLLQTYGVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMS 70

Query: 60  YAHALFRQINAPSTNDF--NAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALK 116
           YAH +F +I  P  N F  N ++RG A      +AV  YR+M   G    D  T  F LK
Sbjct: 71  YAHKVFSKIEKP-INVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLK 129

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           A  ++  +     IHS V+R GF +   +  +LL +YA  G++ SA KVFD+M  +D+ +
Sbjct: 130 AVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA 189

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN++I G A+     EA+ L+  M ++G+ KP+  T++  L+AC  +GA   G + H Y+
Sbjct: 190 WNSVINGFAENGKPEEALALYTEMDLKGI-KPDGFTIVSLLSACAKIGALTLGKRFHVYM 248

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +  L  N+   N ++D+YA+CG +++A  +FD +   K+ V+W ++++  AV+G G  A
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNGLGKEA 307

Query: 297 LELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVV 354
           +ELF+ M  + G+ P +++++  L AC+H G+V +G   F  M+    ++P ++H+G +V
Sbjct: 308 IELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMV 367

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLL RAG++++A + +  + M  ++V+W+TLLGAC ++GD ++AE+A  K++++  N+ G
Sbjct: 368 DLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSG 427

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
           D+VLLSN+YA+ +RW DV ++RK M    V+KVPG S +EVG  +H+F   DKSH +   
Sbjct: 428 DYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDM 487

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY KL E+  +++  GY    S V  D+ EEEKENAL YHSEK+A+AF LIST E   I+
Sbjct: 488 IYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIR 547

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V KNL++C DCH  IKL+SKVYNREI+VRDR RFH FK+G+CSC+DYW
Sbjct: 548 VVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/613 (38%), Positives = 366/613 (59%), Gaps = 57/613 (9%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           +KQL A    TGQ Q  L    +++I+F A S   ++ YA A+FRQ+  P+   +N +LR
Sbjct: 35  LKQLHAIFIKTGQIQDPL--TAAEVIKFCAFSS-RDIDYARAVFRQMPEPNCFCWNTILR 91

Query: 82  GLAHSSKP---TNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
            LA ++     + A++ +  ML  G  + +  T    LKACAR   L E  QIH  +++ 
Sbjct: 92  VLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKF 151

Query: 138 GFLADALLGTTLLDVYA------------------------------------------- 154
           GF  D  + + L+ +Y                                            
Sbjct: 152 GFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMI 211

Query: 155 ----KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE 210
               ++G+I SAK +FDEM  R + SWN +I+G AQ     EA++LF+ M+   +  PN 
Sbjct: 212 DGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNI-DPNY 270

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
           VT++  L A   +GA + G  IH Y  + +++++ V+ +A++DMY+KCG +D+A +VF+ 
Sbjct: 271 VTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFET 330

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
           +  R + +TW+ ++ AFA+HG    A+  F  MG+AGV P+DV+Y+  L AC+HAGLV++
Sbjct: 331 LPKRNA-ITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEE 389

Query: 331 GVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           G   F+ M    G++P ++HYG +VDLLGRAG L+EA ++++++ +  D V+W+ LLGAC
Sbjct: 390 GRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGAC 449

Query: 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPG 449
           +++ +++M E  +  L+E+  ++ G +V LSNLYA+   W+ V RVR  MK  D++K PG
Sbjct: 450 KMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPG 509

Query: 450 FSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKEN 509
            S+IE+ G+IH+F   D SH K +EI   L E+  K++  GY   T  V  +  E+E+  
Sbjct: 510 CSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERAR 569

Query: 510 ALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFH 569
           AL YHSEK+AVAFGLIST+    +++ KNLRIC DCH  +KLIS +Y R+IIVRDR RFH
Sbjct: 570 ALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFH 629

Query: 570 RFKDGACSCKDYW 582
           +F+ G+CSC DYW
Sbjct: 630 QFEHGSCSCMDYW 642


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/564 (42%), Positives = 340/564 (60%), Gaps = 38/564 (6%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           + + L  L Y+ ALF +   PS   + A++ G A       A+ +Y QML      +A T
Sbjct: 18  SYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFT 77

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
            S  LK C     +     +HS  ++ GF +D  + T LLDVYA+ G++VSA+++FD M 
Sbjct: 78  FSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133

Query: 171 VRDIAS-------------------------------WNALIAGLAQGNLASEAVDLFKR 199
            + + S                               WN +I G  Q  + +EA+ LF+R
Sbjct: 134 EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRR 193

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M ++   KPNEVTVL  L+ACG LGA + G  +H YI    +  NV V  A++DMY+KCG
Sbjct: 194 M-LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCG 252

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            L+ A  VFD I   K +V WN+M++ +A+ G    AL+LF+ M R G+ P +++++  L
Sbjct: 253 SLEDARLVFDKID-DKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGIL 311

Query: 320 CACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
            AC H+G V +G  +FN M +  G++P ++HYG +V+LLGRAG +++A ++VK++++  D
Sbjct: 312 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD 371

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
            VLW TLLGAC+L+G + + E     LV+    N G ++LLSN+YAA   WD V R+R  
Sbjct: 372 PVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTM 431

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           MK+  VKK PG S IEV   +H+F     +H K +EIY  L+EI   +K +GY   T  V
Sbjct: 432 MKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIV 491

Query: 499 LHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNR 558
           LHDIGE EKE +L  HSEKLA+AFGLI+T   T+I++ KNLR+C DCH+V KLISK+  R
Sbjct: 492 LHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGR 551

Query: 559 EIIVRDRVRFHRFKDGACSCKDYW 582
           +I+VRDR RFH F +G+CSC DYW
Sbjct: 552 KIVVRDRNRFHHFVNGSCSCGDYW 575


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/639 (37%), Positives = 366/639 (57%), Gaps = 67/639 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            +L+   S    S  ++ QL A +  +G FQ     V   +++ YA    +   +A  +F
Sbjct: 33  TVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHY--VSGALLKCYANPHFSNFDFALKVF 90

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             I  P+   +N V++G   ++K   A+ +Y +M+  + R +  T     KAC+   A+ 
Sbjct: 91  SSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQ 149

Query: 126 ETLQIHSHVLRHGFLADALLGT------------------------------TLLDVYAK 155
           E  QIH HV++HG  +D  + +                              T++D Y K
Sbjct: 150 EGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLK 209

Query: 156 VGEIVSAKKVFDEMGVRDIASWNALIAGLAQG-NLAS----------------------- 191
            G + +AK +F +M V++I SWN +I GLA+G NL                         
Sbjct: 210 CGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGY 269

Query: 192 -------EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
                  EA+++F++M+ E   +P    +   LAAC ++GA  +G  +H Y++   + ++
Sbjct: 270 ISAGRYKEALEIFQQMQREET-RPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLD 328

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
            V+  A++DMYAKCG LD  +EVF+ +K R+ + TWN M+   A+HG    ALELF ++ 
Sbjct: 329 AVLGTALLDMYAKCGRLDMGWEVFEEMKERE-IFTWNAMIGGLAIHGRAEDALELFSKLQ 387

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRL 363
              +KP+ ++ +  L AC HAG VD G+R+F +M    GV P ++HYG +VDLLGR+G  
Sbjct: 388 EGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLF 447

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            EA D++ S+ M  +  +W  LLGAC+++G+ ++AE   + L+E+   N G +VLLSN+Y
Sbjct: 448 SEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIY 507

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A   R+DDV ++RK MKNR +K VPG S +++ G +H+F   D SH + +EIY KL  I 
Sbjct: 508 AKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIK 567

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            +++  G++  TS VL DI EEEKE A+ YHSEKLA+AFGLI+T     I + KNLR+C 
Sbjct: 568 ERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCD 627

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH   KLIS++++REIIVRDRVR+H FK+G CSCKD+W
Sbjct: 628 DCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/613 (38%), Positives = 369/613 (60%), Gaps = 44/613 (7%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL  C+   ++   H  ++ +H+   G F+S LF VR+ +I  Y++     L  A  LF 
Sbjct: 117 LLNSCARLSSLEPGH--EVHSHIIKHG-FESDLF-VRNALIHLYSV--FGNLNLARTLFD 170

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           +        +N +++G A  ++P +A+  + +M       D  T       C+ +     
Sbjct: 171 ESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNV 230

Query: 127 TLQIHSHVLRH--GFLADALLGTTLLDVYAKVG--------------------------- 157
             QIH+ V ++     ++ LL + ++D+YAK G                           
Sbjct: 231 GKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCG 290

Query: 158 -----EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
                EI  A+K+F+ M  RD+ SW A+I+G +Q    SEA++LFK M+  G+ KP+EVT
Sbjct: 291 YARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGI-KPDEVT 349

Query: 213 VLGALAACGHLGAWKEGDKI-HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           ++  L+AC  LGA+  G ++ H+YI     + N ++  AV+DMYAKCG +D A E+F  +
Sbjct: 350 LVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV 409

Query: 272 -KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
            K  K+   +N+M+   A HG G  A+ +F ++   G+KPD+V+++  LCAC H+GL+++
Sbjct: 410 GKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEE 469

Query: 331 GVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           G +LF SM N  G+KP M+HYG +VDLLGR G L+EA D+V+ +    + V+W+ LL AC
Sbjct: 470 GKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSAC 529

Query: 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPG 449
           + +G+V++ EIA +KL+EM + +   +VLLSN+ A   +W++  +VRK M++  ++K PG
Sbjct: 530 RTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPG 589

Query: 450 FSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKEN 509
           +SYIE+GG IH+F  SDKSH + +EI   L ++  ++K  GY   T+ V+ DI EEEKE+
Sbjct: 590 WSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKES 649

Query: 510 ALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFH 569
            + YHSEKLA+AFGL+  S   +I++ KNLRIC DCH   KL+S++Y REI VRD +RFH
Sbjct: 650 VVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFH 709

Query: 570 RFKDGACSCKDYW 582
            F++G+CSC D+W
Sbjct: 710 HFRNGSCSCMDFW 722



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 133/441 (30%), Positives = 217/441 (49%), Gaps = 47/441 (10%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYAL-SPLNELAYAHALF 65
           LL+ C S      IH +      T       ++F + S++I F++L    + L ++  LF
Sbjct: 15  LLESCKSFKQGLQIHAQ------TIVNGLHHQIFSI-SRLISFFSLLGSKDGLDHSRLLF 67

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLAL 124
            QI+ P+   +N ++RG + S  P  A++ Y  M+ +G    +  T  F L +CAR+ +L
Sbjct: 68  SQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSL 127

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               ++HSH+++HGF +D  +   L+ +Y+  G +  A+ +FDE  VRD+ S+N +I G 
Sbjct: 128 EPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGY 187

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE--YIREERLD 242
           A+ N    A+ LF  M+  G+  P+E T +   + C  L     G +IH   Y     +D
Sbjct: 188 AEVNQPESALCLFGEMQNSGIL-PDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSID 246

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA-------------- 288
            N+++ +A++DMYAKCGL++ A  VF  +   KS   W++MV  +A              
Sbjct: 247 SNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNH 306

Query: 289 VH-----------------GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
           +H                 G    ALELF++M   G+KPD+V+ +A L AC   G  D G
Sbjct: 307 MHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLG 366

Query: 332 VRLFNSMANCGV-KPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGA 388
            RL++     GV   N     +V+D+  + G +  A +I + V  +M T  V    + G 
Sbjct: 367 KRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGL 426

Query: 389 CQLYGDVEMAEIASRKLVEMG 409
            Q +G  E A    R+L+  G
Sbjct: 427 AQ-HGLGETAITVFRELISTG 446


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/526 (41%), Positives = 330/526 (62%), Gaps = 3/526 (0%)

Query: 58   LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
            L  A+ +F  +   +   + A++ G A   +   A   + QM     +    T S  LKA
Sbjct: 638  LQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKA 697

Query: 118  CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
            C     L E  ++ +H+L  G+  D  +G  L+  Y+K G +  A+KVFD+M  RDI SW
Sbjct: 698  CMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSW 757

Query: 178  NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            N +IAG AQ  L   A+    +M+ +GV   N+ + +  L AC    A +EG ++H  I 
Sbjct: 758  NKMIAGYAQNGLGGTALQFAYQMQEQGVVL-NKFSFVSILNACSSFSALEEGKRVHAEIV 816

Query: 238  EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
            + ++  +V V  A+I MYAKCG L++A EVFDN    K++VTWN M+ A+A HG   +AL
Sbjct: 817  KRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNF-TEKNVVTWNAMINAYAQHGLASKAL 875

Query: 298  ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
            + F  M + G+KPD  ++ + L ACNH+GLV +G R+F+S+ +  G+ P ++HYG +V L
Sbjct: 876  DFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGL 935

Query: 357  LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
            LGRAGR QEA  ++  +    D  +W+TLLGAC+++G+V +AE A+   +++ + N   +
Sbjct: 936  LGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVY 995

Query: 417  VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
            VLLSN+YAA  RWDDV ++R+ M+ R ++K PG S+IEV  +IH+F  +D+SH +  EIY
Sbjct: 996  VLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIY 1055

Query: 477  EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
            E+L  +  +++  GY+  T  VLH++ +E +E +LC HSE+LA+A+GL+ T   T I++F
Sbjct: 1056 EELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIF 1115

Query: 537  KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLRIC DCH   K ISK+  REII RD  RFH FK+G CSC+D+W
Sbjct: 1116 KNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 228/477 (47%), Gaps = 15/477 (3%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ++L  CS++ A+    +  + +H++  G   S    + + +I  YA     +L  A  LF
Sbjct: 390 SVLNACSTSKALGAGEL--IHSHISEVGH--SSDVQIGNSLISMYAR--CGDLPRARELF 443

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             +       +NA++ G A       A+  Y+QM     +   +T    L AC    A  
Sbjct: 444 NTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYS 503

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           +   IH  +LR G  ++  L   L+++Y + G I+ A+ VF+    RDI SWN++IAG A
Sbjct: 504 DGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHA 563

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q      A  LF  MK EG+ +P+++T    L  C +  A + G +IH  I E  L ++V
Sbjct: 564 QHGSYEAAYKLFLEMKKEGL-EPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDV 622

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            + NA+I+MY +CG L  A+EVF +++ R ++++W  M+  FA  G+  +A ELF QM  
Sbjct: 623 NLGNALINMYIRCGSLQDAYEVFHSLRHR-NVMSWTAMIGGFADQGEDRKAFELFWQMQN 681

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            G KP   ++ + L AC  +  +D+G ++   + N G + +     +++    ++G + +
Sbjct: 682 DGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTD 741

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN-NCGDFVLLSNLYA 424
           A  +   +    D++ W  ++      G    A   + ++ E G   N   FV + N  +
Sbjct: 742 ARKVFDKMP-NRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACS 800

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           ++   ++  RV   +  R ++       + VG  +   +    S  + +E+++   E
Sbjct: 801 SFSALEEGKRVHAEIVKRKMQ-----GDVRVGAALISMYAKCGSLEEAQEVFDNFTE 852



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 173/313 (55%), Gaps = 3/313 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++  LA       A   Y QM       +  T    L AC+   AL     IHSH+ 
Sbjct: 353 YNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHIS 412

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             G  +D  +G +L+ +YA+ G++  A+++F+ M  RD+ SWNA+IAG A+     EA+ 
Sbjct: 413 EVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMK 472

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           L+K+M+ EGV KP  VT L  L+AC +  A+ +G  IHE I    +  N  + NA+++MY
Sbjct: 473 LYKQMQSEGV-KPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMY 531

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            +CG + +A  VF+  + R  +++WN+M+   A HG    A +LF +M + G++PD +++
Sbjct: 532 RRCGSIMEAQNVFEGTRAR-DIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITF 590

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
            + L  C +   ++ G ++   +   G++ ++    +++++  R G LQ+A ++  S+  
Sbjct: 591 ASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRH 650

Query: 376 GTDMVLWQTLLGA 388
             +++ W  ++G 
Sbjct: 651 -RNVMSWTAMIGG 662



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 186/396 (46%), Gaps = 15/396 (3%)

Query: 6   ALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           ++L  C S   + +   IH K ++A      + Q+ L  +  K           +L  A 
Sbjct: 188 SILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKC---------EDLPSAR 238

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F  I       +N +L   A  +     +  + QM       D +T    L A     
Sbjct: 239 QVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPS 298

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            L E  +IH   +  G  +D  +GT L  ++ + G++  AK+  +    RD+  +NALIA
Sbjct: 299 MLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIA 358

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
            LAQ     EA + + +M+ +GV   N  T L  L AC    A   G+ IH +I E    
Sbjct: 359 ALAQHGHYEEAFEQYYQMRSDGVVM-NRTTYLSVLNACSTSKALGAGELIHSHISEVGHS 417

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            +V + N++I MYA+CG L +A E+F+ +  ++ L++WN ++  +A   D   A++L++Q
Sbjct: 418 SDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAGYARREDRGEAMKLYKQ 476

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M   GVKP  V++L  L AC ++    DG  +   +   G+K N     +++++  R G 
Sbjct: 477 MQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGS 536

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           + EA ++ +  +   D++ W +++     +G  E A
Sbjct: 537 IMEAQNVFEG-TRARDIISWNSMIAGHAQHGSYEAA 571



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 146/284 (51%), Gaps = 3/284 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           ++ C R  +L E  +IH+ ++  G   D  L   L+++Y K   +  A +VF +M  RD+
Sbjct: 89  VQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDV 148

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWN+LI+  AQ     +A  LF+ M+  G F P+++T +  L AC      + G KIH 
Sbjct: 149 ISWNSLISCYAQQGFKKKAFQLFEEMQTAG-FIPSKITYISILTACCSPAELEYGKKIHS 207

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            I E     +  V N++++MY KC  L  A +VF  I  R+ +V++NTM+  +A      
Sbjct: 208 KIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIY-RRDVVSYNTMLGLYAQKAYVE 266

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
             + LF QM   G+ PD V+Y+  L A     ++D+G R+     N G+  +++   ++ 
Sbjct: 267 ECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALA 326

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +  R G +  A   +++ +   D+V++  L+ A   +G  E A
Sbjct: 327 TMFVRCGDVAGAKQALEAFA-DRDVVVYNALIAALAQHGHYEEA 369



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 156/331 (47%), Gaps = 9/331 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH +F ++       +N+++   A       A   + +M         +T    L AC  
Sbjct: 136 AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCS 195

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              L    +IHS ++  G+  D  +  +LL++Y K  ++ SA++VF  +  RD+ S+N +
Sbjct: 196 PAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTM 255

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +   AQ     E + LF +M  EG+  P++VT +  L A        EG +IH+    E 
Sbjct: 256 LGLYAQKAYVEECIGLFGQMSSEGI-PPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEG 314

Query: 241 LDMNVVVCNAVIDMYAKCGLL---DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           L+ ++ V  A+  M+ +CG +    +A E F +    + +V +N ++ A A HG    A 
Sbjct: 315 LNSDIRVGTALATMFVRCGDVAGAKQALEAFAD----RDVVVYNALIAALAQHGHYEEAF 370

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           E + QM   GV  +  +YL+ L AC+ +  +  G  + + ++  G   +++   S++ + 
Sbjct: 371 EQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMY 430

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            R G L  A ++  ++    D++ W  ++  
Sbjct: 431 ARCGDLPRARELFNTMPK-RDLISWNAIIAG 460



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 104/217 (47%), Gaps = 13/217 (5%)

Query: 182 AGLAQGNLAS------EAVDLFKRMKMEGVFKP-----NEVTVLGALAACGHLGAWKEGD 230
           AG A  NL S      E     +R  +   ++P     N    +  +  C    +  E  
Sbjct: 43  AGGASSNLVSVKVMRDEQHRGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAK 102

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           +IH  + E  +  ++ + N +I+MY KC  +  A +VF  +  R+ +++WN+++  +A  
Sbjct: 103 RIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMP-RRDVISWNSLISCYAQQ 161

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
           G   +A +LFE+M  AG  P  ++Y++ L AC     ++ G ++ + +   G + + +  
Sbjct: 162 GFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQ 221

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
            S++++ G+   L  A  +   +    D+V + T+LG
Sbjct: 222 NSLLNMYGKCEDLPSARQVFSGIYR-RDVVSYNTMLG 257


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/598 (39%), Positives = 353/598 (59%), Gaps = 38/598 (6%)

Query: 17  VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF 76
            S   +KQL AHL  T    S L P+ S++    A +  +  +YA  +F+ ++A     +
Sbjct: 26  TSPFELKQLHAHLLKTNSPLSSL-PL-SRVASVCAFN--SSFSYAKLIFQLLDASEVTHW 81

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N  LR  A    P +A+  + ++       D  TCSF LKAC+R+L +     +H +V +
Sbjct: 82  NTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEK 141

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA-------------- 182
            G  ++  L   ++ +YA  GEI  A+KVFD+M  RD+ +WN +IA              
Sbjct: 142 LGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKL 201

Query: 183 -----------------GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
                            G AQ   + EA+DLF  M+  G+  PNEVTV+  L AC  +G 
Sbjct: 202 FAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL-PNEVTVVAVLVACADMGN 260

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
              G +IH++      + N+ VCN +IDMY KCG L+ A  +FDN++  +++V+W+ M+ 
Sbjct: 261 LVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME-ERTVVSWSAMIA 319

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVK 344
             A HG    AL LF +M   GVKP+ V+++  L AC+H G+V+ G + F SM  + G+ 
Sbjct: 320 GLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIV 379

Query: 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRK 404
           P ++HYG +VDL  RAG LQEA + + ++ +  + V+W  LLG C+++ ++++AE A+R 
Sbjct: 380 PRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRH 439

Query: 405 LVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFT 464
           L ++   N G +V+LSN+YA   RW+DV RVRK M++R VKK PG+S I V GV++ F  
Sbjct: 440 LSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVA 499

Query: 465 SDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGL 524
            D +H +  EI++  ++++ ++K  GY   TS VL D+ E++KE  L  HSEKLAV FGL
Sbjct: 500 GDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGL 559

Query: 525 ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           I T+  T I++ KNLR+C DCH  +K+IS V  REI+VRDR RFH FK+G+CSC DYW
Sbjct: 560 IKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 367/603 (60%), Gaps = 44/603 (7%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           H+KQ+ AH   TGQ    L    +++++F  LS   E+ YA   F QI+ P+   +N ++
Sbjct: 30  HLKQIHAHFIKTGQIHHPL--AAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTII 87

Query: 81  RGLAHSS-------KPTNAVLWYRQMLR-GSHRSDALTCSFALKACARVLALFETLQIHS 132
           R LA S            A+L++  ML  G    +  T    LKACA++  + E  Q+H 
Sbjct: 88  RALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHG 147

Query: 133 HVLRHGFLAD--------------------------------ALLGTTLLDVYAKVGEIV 160
            V++ G ++D                                 +L   ++D Y ++G++ 
Sbjct: 148 FVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLR 207

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           +++++FD M  + + SWN +I+G AQ     EA+++F  M++ G   PN VT++  L A 
Sbjct: 208 ASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQL-GDVPPNYVTLVSVLPAV 266

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
             LGA + G  +H +  +  ++++ V+ +A+IDMY+KCG +DKA +VF+ I+ +K+ +TW
Sbjct: 267 SRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITW 326

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           + ++   A+HG    AL+ F +M +AGV P DV Y+  L AC+HAGLV++G  ++  M N
Sbjct: 327 SAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVN 386

Query: 341 -CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             G+ P ++HYG +VDLLGRAG L+EA  ++ ++ +  D V+ + LLGAC+++G++EM E
Sbjct: 387 IVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGE 446

Query: 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
             ++ L+    ++ G +V LSN++A+   W+ V +VR  MK  D++K PG S+IE+ GVI
Sbjct: 447 RIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVI 506

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H+F   D SH +   I+  L+E+  +++  GY   T+ VL ++ E+EK++AL YHSEK+A
Sbjct: 507 HEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIA 566

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +AFGLIST   T +Q+ KNLR+C DCH  IKL+SK+YNR+IIVRDR RFH F++G+CSC 
Sbjct: 567 IAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCM 626

Query: 580 DYW 582
           DYW
Sbjct: 627 DYW 629


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/579 (40%), Positives = 361/579 (62%), Gaps = 10/579 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L+Q C S    S   +KQ+ A     G       P  +K + F  +S    +++A  +F
Sbjct: 39  SLVQLCGS----SQSKLKQIHAFSIRHGVPPQN--PDFNKHLIFALVSLSAPMSFAAQIF 92

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLAL 124
            QI AP+   +N ++RG A S  P+ AV  + QM   S    D  T  F  KA A+++ +
Sbjct: 93  NQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDV 152

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
                IHS V+R+GF +   +  +L+ +Y+ +G + SA +VF+ M  RD  +WN++I G 
Sbjct: 153 SLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGF 212

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           A   + +EA+ L++ M  EGV +P+  T++  L+AC  LGA   G+++H Y+ +  L  N
Sbjct: 213 ALNGMPNEALTLYREMGSEGV-EPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQN 271

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
               NA++D+Y+KCG    A +VFD ++ R S+V+W ++++  AV+G G  AL+LF ++ 
Sbjct: 272 QHASNALLDLYSKCGNFRDAQKVFDEMEER-SVVSWTSLIVGLAVNGLGNEALKLFGELE 330

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRL 363
           R G+KP +++++  L AC+H G++D+G   F  M    G+ P ++H+G +VDLL RAG++
Sbjct: 331 RQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKV 390

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            +A D ++++ +  + V+W+TLLGAC ++G +E+ E+A  ++  +   + GDFVLLSNLY
Sbjct: 391 GDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLY 450

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A+  RW DV  VRK M  + VKK PG+S +E+   +++F   D+SH +  E Y  L +I 
Sbjct: 451 ASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKIT 510

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
             +K  GY   T  VL DI EEEKE AL +H+EK+A+AF L++T   T I++ KNLR+C 
Sbjct: 511 QLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCA 570

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH  IKLISKV+ REIIVRDR RFH FKDG+CSCKDYW
Sbjct: 571 DCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/587 (40%), Positives = 351/587 (59%), Gaps = 37/587 (6%)

Query: 29  LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSK 88
           +     F S LF + + +I FY  S L +L  A+ +F +I       +N+++ G      
Sbjct: 156 MVMKASFGSDLF-ISNSLIHFY--SSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGS 212

Query: 89  PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF-----LADA 143
           P  A+  +++M   + R + +T    L ACA+ + L        ++ R+G      L++A
Sbjct: 213 PEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNA 272

Query: 144 LLG--------------------------TTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           +L                           TT++D YAKVG+  +A++VFD M   DI +W
Sbjct: 273 MLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAW 332

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NALI+   Q     EA+ +F+ +++    KPNEVT+   LAAC  LGA   G  IH YI+
Sbjct: 333 NALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIK 392

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           ++ + +N  +  ++IDMY+KCG L+KA EVF +++ R+ +  W+ M+   A+HG G  A+
Sbjct: 393 KQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVE-RRDVFVWSAMIAGLAMHGHGRAAI 451

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDL 356
           +LF +M    VKP+ V++   LCAC+H+GLVD+G   FN M    GV P  KHY  +VD+
Sbjct: 452 DLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDI 511

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           LGRAG L+EA ++++ + +     +W  LLGAC++YG+VE+AE+A  +L+E  SNN G +
Sbjct: 512 LGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAY 571

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSN+YA   +WD V R+R+ MK   ++K PG S IEV G+IH+F   D SH    EIY
Sbjct: 572 VLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIY 631

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEE-KENALCYHSEKLAVAFGLISTSEATSIQV 535
            KLDEI+ +IK  GY +  S +L  + EE  KE+AL  HSEKLA+A+GLI    +  I++
Sbjct: 632 SKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRMEPSQPIRI 691

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH V KLISK+YNR+I++RDR RFH F  G CSC DYW
Sbjct: 692 VKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 214/420 (50%), Gaps = 43/420 (10%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           L+ KC++       H+KQL AH+  TG F     P  +K+    ALS  + L YA  +F 
Sbjct: 36  LIDKCANKK-----HLKQLHAHMLRTGLFFDP--PSATKLFTACALSSPSSLDYACKVFD 88

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLALF 125
           QI  P+   +N ++R  A S KP   +L + QML  S R  ++ T  F +KA   V +L 
Sbjct: 89  QIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLL 148

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
               IH  V++  F +D  +  +L+  Y+ +G++ SA  VF ++  +DI SWN++I+G  
Sbjct: 149 AGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFV 208

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           QG    EA+ LFKRMKME   +PN VT++G L+AC      + G    +YI    +D+N+
Sbjct: 209 QGGSPEEALQLFKRMKMENA-RPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINL 267

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           ++ NA++DMY KCG L+ A  +FD ++  K +V+W TM+  +A  GD   A  +F+ M R
Sbjct: 268 ILSNAMLDMYVKCGSLEDARRLFDKME-EKDIVSWTTMIDGYAKVGDYDAARRVFDVMPR 326

Query: 306 AGV--------------------------------KPDDVSYLAALCACNHAGLVDDGVR 333
             +                                KP++V+  + L AC   G +D G  
Sbjct: 327 EDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGW 386

Query: 334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +   +   G+K N     S++D+  + G L++A ++  SV    D+ +W  ++    ++G
Sbjct: 387 IHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVER-RDVFVWSAMIAGLAMHG 445


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/562 (38%), Positives = 348/562 (61%), Gaps = 4/562 (0%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
            KQ  A +   G F        S ++   ALS    + YA ++FRQ++ P + +FN ++R
Sbjct: 4   FKQSHARILKXGLFXDSF--CASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMR 61

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
           G         A++ Y++M     + D  T    LKACAR+ A+ E +Q+H+H+L+ G   
Sbjct: 62  GHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLEN 121

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  +  +L+ +Y K GEI     VF++M  R +ASW+ALI   A   + S+ + L   M 
Sbjct: 122 DVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMS 181

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            EG ++  E  ++  L+AC HLGA   G  +H ++      +NV+V  ++I+MY KCG L
Sbjct: 182 NEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXL 241

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
            K   +F  +  +K+ ++++ M+   A+HG G   L +F +M   G++PDD+ Y+  L A
Sbjct: 242 YKGMCLFQKM-AKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNA 300

Query: 322 CNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C+HAGLV +G++ FN M    G++P ++HYG +VDL+GRAG++ EA +++KS+ M  + V
Sbjct: 301 CSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDV 360

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           LW++LL A +++ +++  EIA+++L ++ S    D+V+LSN+YA  +RW+DV R R  M 
Sbjct: 361 LWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMF 420

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
           ++ + + PGFS +EV   +H+F + D  H +   +YE L ++ +++K  GY   T+ VL 
Sbjct: 421 SKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLC 480

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           D+ EEEK+  L  HS+KLA+A+ LI TS+ + +++ +NLR+C DCH   KLIS +++REI
Sbjct: 481 DVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREI 540

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
            VRDR RFH FKDGACSC+DYW
Sbjct: 541 TVRDRHRFHHFKDGACSCRDYW 562


>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 651

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/569 (40%), Positives = 361/569 (63%), Gaps = 13/569 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +LQ C+S   +  IH     +H+   G        + + ++ F A+S    L+YA  LF 
Sbjct: 11  MLQGCNSMNKLRKIH-----SHVIINGLHHHP--SIFNHLLRFCAVSVNGSLSYAQLLFD 63

Query: 67  QINA-PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS-HRSDALTCSFALKACARVLAL 124
           + ++ PST+ +N ++RG + SS P   +L+Y +ML  S  R D  T SFALKAC R+  +
Sbjct: 64  RFDSDPSTSAWNYLIRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLI 123

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
            + L++H  V+R GFLADA++ T L+  Y+  G +  A KVFDEM VRD+ SWNA+I+  
Sbjct: 124 PKCLELHGSVIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCF 183

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           +   L  +A  ++ RM  EGV   +  T++  L++C H+ A   G  +H    + R + +
Sbjct: 184 SHAGLHHQAFSMYSRMANEGVC-VDAYTIVALLSSCAHVSALNMGVMLHRIACDIRCESS 242

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           V VCNA+IDMYAKCG L+ A  VF  ++ ++ ++TWN+M++ + VHG G  A+  F +M 
Sbjct: 243 VFVCNALIDMYAKCGSLENAVGVFKGMR-KRDVLTWNSMIIGYGVHGHGVEAISFFRKMV 301

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRL 363
            +GV+P+ V++L  L  C+H GLV +GV  F  M++   + PN+KHYG +VDL GRAG+L
Sbjct: 302 ASGVRPNAVTFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGRAGQL 361

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
           ++A +++ + S   D VLW+TLLG+C+++ ++E+ E+A +KLV++ + N GD+VL++++Y
Sbjct: 362 EKALEMIHTSSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIY 421

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           +A         +RK +++ D++ +PG+S+IE+G  +HKF   DK H +   IY +L E++
Sbjct: 422 SAANDAQGFASMRKLIRSHDLRTIPGWSWIEIGDQVHKFVIDDKMHPESALIYSELGEVI 481

Query: 484 FKIKEYGYAAGTSC-VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
            +    GY    S    H + +   E+A   HSEKLA+A+GL+ T+  T++++ KNLR+C
Sbjct: 482 NRAILAGYKPEDSNRTAHTLSDRCLESADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVC 541

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRF 571
           RDCH   K +SK +NREIIVRDRVRFH+F
Sbjct: 542 RDCHSFTKYVSKAFNREIIVRDRVRFHQF 570


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/616 (37%), Positives = 360/616 (58%), Gaps = 57/616 (9%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-------NEL 58
           + L+ C++   +  IH   ++AH                 I + +A S L       N L
Sbjct: 20  SFLESCTTLSHLKIIHAHLIRAH----------------TIFDVFAASCLISISINKNLL 63

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
            YA  +F QI  P+   +N+ +RG + S  P  +  +Y Q  R     D LT  F +KAC
Sbjct: 64  DYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKAC 123

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTL----------------------LDV---- 152
            +  +L   +Q H  ++RHGF +D  +  +L                      LDV    
Sbjct: 124 TQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWT 183

Query: 153 -----YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
                Y K G++ SA+K+FD+M  +++ +W+ +I+G A+ +   +A++L+  ++ EGV  
Sbjct: 184 SMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGV-H 242

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
            NE  ++  +A+C HLGA + G++ H+YI   ++ +N+++  A++DMYA+CG +DKA  V
Sbjct: 243 ANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWV 302

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           FD +  R +L +W T++  FA+HG   +ALE F +M +AG+ P ++++ A L AC+H GL
Sbjct: 303 FDQLPGRDAL-SWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGL 361

Query: 328 VDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           V+ G+ LF SM  +  ++P ++HYG +VDLLGRAG+L EA   V  + M  +  +W  LL
Sbjct: 362 VERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALL 421

Query: 387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK 446
           GAC+++ + E+AE A + L+E+   + G +VLLSN+YA   +W++V  +R+ MK R V K
Sbjct: 422 GACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVK 481

Query: 447 VPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEE 506
            PG++  E+ G +HKF   DK+H + ++I    +EI+ KI+  GY       L DI EEE
Sbjct: 482 PPGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEE 541

Query: 507 KENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRV 566
           KE+ +  HSEKLA+A+ ++ T     I++ KNLR+C DCH   KLISKVY RE+IVRDR 
Sbjct: 542 KESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRN 601

Query: 567 RFHRFKDGACSCKDYW 582
           RFH FK GACSC DYW
Sbjct: 602 RFHHFKGGACSCMDYW 617


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/523 (42%), Positives = 331/523 (63%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF ++       +NA++ G A   +   A+L +  M + +   +  T    L ACA+
Sbjct: 214 ARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQ 273

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             AL     + S +   G  ++  L   L+D+Y+K G++ +A+++FD+M  RD+ SWN +
Sbjct: 274 SNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVM 333

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G        EA+ LF+ M   GV +P E+T L  L +C HLGA   G  IH YI +  
Sbjct: 334 IGGYTHMCSYKEALALFREMLASGV-EPTEITFLSILPSCAHLGAIDLGKWIHAYINKNF 392

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
             ++  +  ++ID+YAKCG +  A +VFD +K  KSL +WN M+   A+HG   +A ELF
Sbjct: 393 NSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKI-KSLASWNAMICGLAMHGQADKAFELF 451

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
            +M   G++P++++++  L AC HAGLVD G + F+SM  +  + P  +HYG ++DLLGR
Sbjct: 452 SKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGR 511

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG  +EA  +++++ +  D  +W +LLGAC+ +G VE+ E+ + +L E+  +N G +VLL
Sbjct: 512 AGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLL 571

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YA   +WDDV R+R  + +R +KKVPG + IEV  V+H+F   DK H +  +IY  L
Sbjct: 572 SNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRML 631

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +E+  ++K +G+ A TS VL+D+ EE KE AL +HSEKLA+AFGLIST   T I++ KNL
Sbjct: 632 EEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNL 691

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+CR+CH   KLISK++NREII RDR RFH FKDG+CSC DYW
Sbjct: 692 RVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 130/423 (30%), Positives = 227/423 (53%), Gaps = 41/423 (9%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL KC S         KQ+ AH+  TG   + LF + SK+IEF A+S   +++YA +LF 
Sbjct: 35  LLSKCQSIRT-----FKQIHAHIIKTG-LHNTLFAL-SKLIEFSAVSRSGDISYAISLFN 87

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            I  P+   +N+++RGL+ S  P  A++++ +M+      ++ T  F LK+CA++ +  E
Sbjct: 88  SIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHE 147

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS------------------------- 161
             QIH+HVL+ GF++D  + T+L+++YA+ GE+ +                         
Sbjct: 148 GKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYAL 207

Query: 162 ------AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG 215
                 A+++FDEM V+D+ SWNA+IAG AQ   + EA+ LF+ M+   V  PNE T++ 
Sbjct: 208 WGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANV-PPNESTIVS 266

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            L+AC    A   G+ +  +I +  L  N+ + NA+IDMY+KCG L  A E+FD++   +
Sbjct: 267 VLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDM-LER 325

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
            +++WN M+  +        AL LF +M  +GV+P ++++L+ L +C H G +D G  + 
Sbjct: 326 DVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIH 385

Query: 336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395
             +       +     S++DL  + G +  A  +   + + + +  W  ++    ++G  
Sbjct: 386 AYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKS-LASWNAMICGLAMHGQA 444

Query: 396 EMA 398
           + A
Sbjct: 445 DKA 447



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 152/303 (50%), Gaps = 11/303 (3%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +I+ Y  S   +L  A  LF  +       +N ++ G  H      A+  +R+ML     
Sbjct: 302 LIDMY--SKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVE 359

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
              +T    L +CA + A+     IH+++ ++       L T+L+D+YAK G IV+A++V
Sbjct: 360 PTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQV 419

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FD M ++ +ASWNA+I GLA    A +A +LF +M  +G+ +PNE+T +G L+AC H G 
Sbjct: 420 FDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGI-EPNEITFVGILSACKHAGL 478

Query: 226 WKEGDK-IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
              G +     +++ ++         +ID+  + GL ++A  +  N++ +     W +++
Sbjct: 479 VDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLL 538

Query: 285 MAFAVHGDGPRALELFEQMGRA--GVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMANC 341
            A   HG     +EL E +      ++PD+  +Y+        AG  DD  R+   + + 
Sbjct: 539 GACRDHG----RVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDR 594

Query: 342 GVK 344
           G+K
Sbjct: 595 GMK 597



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 92/205 (44%), Gaps = 15/205 (7%)

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA--KCGLLDKAFE 266
            E   L  L+ C  +  +K+   IH +I +  L   +   + +I+  A  + G +  A  
Sbjct: 28  QEHPSLKLLSKCQSIRTFKQ---IHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAIS 84

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +F++I+   +L  WN+M+   ++      AL  F +M  +GV+P+  ++   L +C    
Sbjct: 85  LFNSIE-EPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLA 143

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC---------DIVKSVSMGT 377
              +G ++   +   G   ++  + S++++  ++G +  A          D +   ++  
Sbjct: 144 SAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIA 203

Query: 378 DMVLWQTLLGACQLYGDVEMAEIAS 402
              LW  +  A QL+ ++ + ++ S
Sbjct: 204 GYALWGYMDRARQLFDEMPVKDVVS 228


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 248/642 (38%), Positives = 365/642 (56%), Gaps = 73/642 (11%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL KCSS         KQ+ A +  TG     L  V  K++   A++  + L YA  LF
Sbjct: 7   SLLSKCSSLKPT-----KQIHAQICKTGLHTDPL--VFGKLLLHCAITISDALHYALRLF 59

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFALKACARVLAL 124
                P T   N ++R L+ S  P +++  + Q+ R    S D+ T +FALKA A    L
Sbjct: 60  HHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHL 119

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG-------------- 170
              +Q+HS   RHGF A   +GTTL+ +YA+ G+  SA++VFDEM               
Sbjct: 120 RPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAA 179

Query: 171 -----------------VRDIASWNALIAGLAQ-GNLA---------------------- 190
                            VR++ SWN ++AG A+ G L                       
Sbjct: 180 FRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIV 239

Query: 191 --------SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
                    EA   F+ +  E + + NEV++ G L+AC   GA++ G  +H ++ +    
Sbjct: 240 GFAHNGCFDEAFGFFRELLREEI-RTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFL 298

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
               V NA+ID Y+KCG +  A  VF N+   +S+V+W +++   A+HG G  A++LF +
Sbjct: 299 YVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHE 358

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAG 361
           M  +GV+PD +++++ L AC+H+GLV++G  LF+ M N  G++P ++HYG +VDL GRA 
Sbjct: 359 MEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAA 418

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           RLQ+A + +  + +  + ++W+TLLGAC ++G++EMAE+   +L EM  +N GD VLLSN
Sbjct: 419 RLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSN 478

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YA   +W DV  +R+ M    +KK PG+S IE+  VI+ F   +K +    E +EKL E
Sbjct: 479 VYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLRE 538

Query: 482 IMFKIK-EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           IM +++ E GYA     VLHDI EEEKE+++  HSEKLA AFG+    +   +++ KNLR
Sbjct: 539 IMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLR 598

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +C DCH V+KLISKVY  EIIVRDR RFH FKDG CSC+DYW
Sbjct: 599 VCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/578 (39%), Positives = 347/578 (60%), Gaps = 9/578 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL++C S         KQ+ AH+   G F        S ++   ALS    + YA ++F
Sbjct: 36  SLLKRCKSME-----EFKQVHAHILKLGLFYDSF--CGSNLVASCALSRWGSMEYACSIF 88

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            QI  P + ++N ++RG  +S     A+L Y +ML      D  T  F LKAC+ ++AL 
Sbjct: 89  SQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALK 148

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E +QIH+HV + G   D  +   L+ +Y K G I  A  VF++M  + +ASW+++I   A
Sbjct: 149 EGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHA 208

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
              +  E + L   M  EG  +  E  ++ AL+AC HLG+   G  IH  +     ++NV
Sbjct: 209 SVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNV 268

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           VV  ++IDMY KCG L+K   VF N+   K+  ++  M+   A+HG G  A+ +F  M  
Sbjct: 269 VVKTSLIDMYVKCGSLEKGLCVFQNMA-HKNRYSYTVMIAGLAIHGRGREAVRVFSDMLE 327

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQ 364
            G+ PDDV Y+  L AC+HAGLV++G++ FN M     +KP ++HYG +VDL+GRAG L+
Sbjct: 328 EGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLK 387

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           EA D++KS+ +  + V+W++LL AC+++ ++E+ EIA+  +  +  +N GD+++L+N+YA
Sbjct: 388 EAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYA 447

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
             ++W +V R+R  M  + + + PGFS +E    ++KF + DKS      IY+ + ++ +
Sbjct: 448 RAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEW 507

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
           ++K  GY    S VL D+ E+EK   L +HS+KLA+AF LI TSE + I++ +NLR+C D
Sbjct: 508 QLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCND 567

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH   K IS +Y REI VRDR RFH FKDG CSCKDYW
Sbjct: 568 CHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/578 (39%), Positives = 346/578 (59%), Gaps = 9/578 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL++C S      +H     AH+   G F        S ++   ALS    + YA ++F
Sbjct: 36  SLLKRCKSMEEFKKVH-----AHILKLGLFYDSF--CGSNLVASCALSRWGSMEYACSIF 88

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           RQI  P + ++N ++RG  +S     A+L Y +ML      D  T  F LKAC+ ++AL 
Sbjct: 89  RQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALK 148

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E +QIH+HV   G   D  +   L+ +Y K G I  A  VF++M  + +ASW+++I   A
Sbjct: 149 EGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHA 208

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
              +  E + L   M  EG  +  E  ++ AL+AC HLG+   G  IH  +     ++NV
Sbjct: 209 SVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNV 268

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           VV  ++IDMY KCG L+K   VF N+   K+  ++  M+   A+HG G  AL +F  M  
Sbjct: 269 VVKTSLIDMYVKCGSLEKGLCVFQNMA-HKNRYSYTVMIAGLAIHGRGREALRVFSDMLE 327

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQ 364
            G+ PDDV Y+  L AC+HAGLV +G + FN M     +KP ++HYG +VDL+GRAG L+
Sbjct: 328 EGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLK 387

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           EA D++KS+ +  + V+W++LL AC+++ ++E+ EIA+  + ++  +N GD+++L+N+YA
Sbjct: 388 EAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLANMYA 447

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
             ++W +V R+R  M  +++ + PGFS +E    ++KF + DKS  +   IY+ + ++ +
Sbjct: 448 RAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEW 507

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
           ++K  GY    S VL D+ E+EK   L +HS+KLA+AF LI TSE + +++ +NLR+C D
Sbjct: 508 QLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRMCND 567

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH   K IS +Y REI VRD  RFH FKDG CSCKDYW
Sbjct: 568 CHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 5/263 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD--VYAKVGEIVSAKKVFDEMGVR 172
           L    R  ++ E  ++H+H+L+ G   D+  G+ L+     ++ G +  A  +F ++   
Sbjct: 35  LSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEP 94

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
               +N +I G        EA+ L+  M   G+ +P+  T    L AC  L A KEG +I
Sbjct: 95  GSFEYNTMIRGNVNSMDLEEALLLYVEMLERGI-EPDNFTYPFVLKACSLLVALKEGVQI 153

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H ++    L+++V V N +I MY KCG ++ A  VF+ +   KS+ +W++++ A A    
Sbjct: 154 HAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMD-EKSVASWSSIIGAHASVEM 212

Query: 293 GPRALELFEQMGRAGVKPDDVSYL-AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
               L L   M R G    + S L +AL AC H G  + G  +   +     + N+    
Sbjct: 213 WHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKT 272

Query: 352 SVVDLLGRAGRLQEACDIVKSVS 374
           S++D+  + G L++   + ++++
Sbjct: 273 SLIDMYVKCGSLEKGLCVFQNMA 295


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/529 (41%), Positives = 337/529 (63%), Gaps = 5/529 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +++YA  LF +++ P    +N +++G   +  P  AV  Y +M     R D  T  F +K
Sbjct: 84  DMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIK 143

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA +  L+  L +H HV++HG    A + T L+ +Y K GE+  A+ +F  M  RD+ +
Sbjct: 144 ACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVA 203

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WNALIA   Q   +S+A+  F+ M M G+ KP+ VT++ AL+ACGHLG  + G++I+E+ 
Sbjct: 204 WNALIAVCVQTGFSSKALQSFREMGMAGI-KPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           REE +D N++V NA +DM AKCG +DKA  +FD +  ++++++W+T++  +AV+G+  +A
Sbjct: 263 REEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMP-QRNVISWSTVIGGYAVNGESEKA 321

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC---GVKPNMKHYGSV 353
           L LF +M   GV+P+ V++LA L AC+H G V++G + FN MA      ++P  +HY  +
Sbjct: 322 LALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACM 381

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VDLLGR+G L+EA + +K + +  D  +W  LLGAC ++ ++++ +  +  L E+     
Sbjct: 382 VDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIA 441

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
              VLLSN+YAA  RW  V +VR+ MK +  +KV  +S +E  G IH  +  DKSH +  
Sbjct: 442 SYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSA 501

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
            I  KL++++ ++K  GY   T  V HD+ +EEKE+ L  HSEKLA+AF LI+ S    I
Sbjct: 502 SILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPI 561

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +V KNLRIC DCH   KL+S++  REII+RD+ RFH FK+G CSCKD+W
Sbjct: 562 RVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/625 (40%), Positives = 358/625 (57%), Gaps = 70/625 (11%)

Query: 26  QAHLTTTGQFQSKLFPVRSKIIEFYALS-PLNELAYAHALFRQINAPSTNDFNAVLRGLA 84
           Q H      F   LF     + +  + S  L  L YA ++FR  + P+   FNA++RGLA
Sbjct: 55  QLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLA 114

Query: 85  HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADAL 144
            +S+   +V  +  MLR S R D LT  F LK+ A ++ +     +H  V++ G   D+ 
Sbjct: 115 ENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSF 174

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDE-----------------------------------M 169
           +  +L+D+Y K+GE+    ++FDE                                   M
Sbjct: 175 VRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAM 234

Query: 170 GVRDIASWNALIAG----------------LAQGNLAS---------------EAVDLFK 198
             R+  SWN+LI G                + + N+ S               +A+ +F 
Sbjct: 235 PERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFW 294

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
           RM  EGV +PN++TV+ AL AC  +GA + G++IH Y+      +N  +  A++DMYAKC
Sbjct: 295 RMLEEGV-RPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKC 353

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G +  A  VF   K  K L+TW+ M+  +A+HG   +AL+ F +M  AG+ PD+V +LA 
Sbjct: 354 GNIKSASRVFVETKG-KDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAI 412

Query: 319 LCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           L AC+H+G VD G+  F SM  +  ++P MKHY  +VDLLGRAGRL EA   ++S+ +  
Sbjct: 413 LTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINP 472

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
           D V+W  L  AC+ + ++EMAE+ + KL+++   + G +V LSN+YAA  RW+DV RVR 
Sbjct: 473 DFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRT 532

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            MKNR V+K PG+SYIEV G +H F   D +HV+  EI  KL+EI    K+ GY   T+ 
Sbjct: 533 LMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAW 592

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           VLH+I EEEKE+AL  HSEKLA+AFGLIST+  ++I++ KNLR+C DCH ++K  SK+  
Sbjct: 593 VLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSR 652

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           REII+RD  RFH FKDG CSC DYW
Sbjct: 653 REIILRDIKRFHHFKDGTCSCGDYW 677


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/608 (39%), Positives = 373/608 (61%), Gaps = 41/608 (6%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LLQ+CS+   +  IH + L+     TG    ++ P  SK++ F A      LAYA  +F 
Sbjct: 24  LLQRCSNMEELRQIHGQMLK-----TGLILDEI-PA-SKLLAFCASPNSGSLAYARTVFD 76

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           +I  P+T  +N ++RG ++S +P  A+L Y  ML  S   +A T  F LKAC+ + AL E
Sbjct: 77  RIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEE 136

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG--- 183
           T QIH+H+++ GF ++     +LL+VY+K G+I SA+ +FD++  RD  SWN++I G   
Sbjct: 137 TQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTK 196

Query: 184 -------------LAQGNLAS---------------EAVDLFKRMKMEGVFKPNEVTVLG 215
                        + + N+ S               EA++LF RM+  G+ K + V ++ 
Sbjct: 197 CGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGI-KLDNVALVS 255

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            L AC  LG   +G  IH YI++  ++++ ++   +IDMYAKCG L++A EVF  ++  K
Sbjct: 256 TLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME-EK 314

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
            +  W  M+  +A+HG G  ALE F +M  AGV+P+ +++   L AC+HAGLV +   LF
Sbjct: 315 GVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLF 374

Query: 336 NSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
            SM    G KP+++HYG +VDLLGRAG L+EA ++++++ +  +  +W  LL AC ++G+
Sbjct: 375 ESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 434

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           +E+ +   + L+++   + G ++ L++++AA   W+   RVR+ MK + V K+PG S I 
Sbjct: 435 LELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVIS 494

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYH 514
           V G  H+F   D+SH + +EI   L++I+ +++E GY      +L D+ ++EKE A+ +H
Sbjct: 495 VNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHH 554

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SEKLAV FGLIST    +I++ KNLR+C DCH VIKLISKVY REI++RDR RFH FKDG
Sbjct: 555 SEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDG 614

Query: 575 ACSCKDYW 582
            C+C DYW
Sbjct: 615 NCTCGDYW 622


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/572 (41%), Positives = 345/572 (60%), Gaps = 17/572 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+       G + S +F V S +I+ Y  S    L  A  LF +I   +   + +++ G
Sbjct: 106 KQIHQQAFVFG-YGSDIF-VASALIDMY--SKCGYLNDARKLFDEIPERNVVSWTSMISG 161

Query: 83  LAHSSKPTNAVLWYRQML-----------RGSHRSDALTCSFALKACARVLALFETLQIH 131
              + +   AV  +++ L                 D++     + ACARV     T  +H
Sbjct: 162 YVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVH 221

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
              ++ GF     +G TL+D YAK GEI  ++KVFD M   D+ SWN+LIA  AQ  L+ 
Sbjct: 222 GLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSV 281

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           EA  LF  M   G  + N VT+   L AC H GA + G  IH+ + +  L+ N+VV  ++
Sbjct: 282 EAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSI 341

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           +DMY KCG ++ A + FD +K RK++ +W  MV  + +HG G  A+++F +M R G+KP+
Sbjct: 342 VDMYCKCGRVEMARKAFDRLK-RKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPN 400

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
            +++++ L AC+HAGL+ +G   FN M     V+P ++HY  +VDLLGRAG L+EA  ++
Sbjct: 401 YITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLI 460

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
           + + +  D ++W +LLGAC+++ +VE+ EI++RKL ++  +NCG +VLLSN+YA   RWD
Sbjct: 461 QEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWD 520

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
           DV R+R  MKN  + K PG+S +E  G +H F   DK H +  +IYE LDE+  K++E G
Sbjct: 521 DVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVG 580

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
           Y    + VL+D+  EEK   L  HSEKLAVAFG++++   + IQ+ KNLRIC DCH  IK
Sbjct: 581 YMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIK 640

Query: 551 LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LISK+ NREI++RD  RFH FKDG CSC DYW
Sbjct: 641 LISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 156/312 (50%), Gaps = 12/312 (3%)

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           + ++  S   +N+++   A S     A+  +  M + S   +  T    +K+C+ +  L 
Sbjct: 44  KYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLC 103

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              QIH      G+ +D  + + L+D+Y+K G +  A+K+FDE+  R++ SW ++I+G  
Sbjct: 104 AGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYV 163

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEV---------TVLG-ALAACGHLGAWKEGDKIHEY 235
           Q   A EAV LFK   +      +E+          +LG  ++AC  +      + +H  
Sbjct: 164 QNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGL 223

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
             ++  +  + V N ++D YAKCG +  + +VFD ++    + +WN+++  +A +G    
Sbjct: 224 AVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME-ETDVCSWNSLIAVYAQNGLSVE 282

Query: 296 ALELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
           A  LF  M + G V+ + V+  A L AC H+G +  G  + + +    ++ N+    S+V
Sbjct: 283 AFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIV 342

Query: 355 DLLGRAGRLQEA 366
           D+  + GR++ A
Sbjct: 343 DMYCKCGRVEMA 354


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/639 (37%), Positives = 365/639 (57%), Gaps = 67/639 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            +L+   S    S  ++ QL   +  +G FQ     V   +++ YA    +   +A  +F
Sbjct: 33  TVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHY--VSGALLKCYANPHFSNFDFALKVF 90

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             I  P+   +N V++G   ++K   A+ +Y +M+  + R +  T     KAC+   A+ 
Sbjct: 91  SSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQ 149

Query: 126 ETLQIHSHVLRHGFLADALLGT------------------------------TLLDVYAK 155
           E  QIH HV++HG  +D  + +                              T++D Y K
Sbjct: 150 EGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLK 209

Query: 156 VGEIVSAKKVFDEMGVRDIASWNALIAGLAQG-NLAS----------------------- 191
            G + +AK +F +M V++I SWN +I GLA+G NL                         
Sbjct: 210 CGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGY 269

Query: 192 -------EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
                  EA+++F++M+ E   +P    +   LAAC ++GA  +G  +H Y++   + ++
Sbjct: 270 ISAGRYKEALEIFQQMQREET-RPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLD 328

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
            V+  A++DMYAKCG LD  +EVF+ +K R+ + TWN M+   A+HG    ALELF ++ 
Sbjct: 329 AVLGTALLDMYAKCGRLDMGWEVFEEMKERE-IFTWNAMIGGLAIHGRAEDALELFSKLQ 387

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRL 363
              +KP+ ++ +  L AC HAG VD G+R+F +M    GV P ++HYG +VDLLGR+G  
Sbjct: 388 EGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLF 447

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            EA D++ S+ M  +  +W  LLGAC+++G+ ++AE   + L+E+   N G +VLLSN+Y
Sbjct: 448 SEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIY 507

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A   R+DDV ++RK MK+R +K VPG S +++ G +H+F   D SH + +EIY KL  I 
Sbjct: 508 AKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIK 567

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            +++  G++  TS VL DI EEEKE A+ YHSEKLA+AFGLI+T     I + KNLR+C 
Sbjct: 568 ERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCD 627

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH   KLIS++++REIIVRDRVR+H FK+G CSCKD+W
Sbjct: 628 DCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/526 (42%), Positives = 325/526 (61%), Gaps = 3/526 (0%)

Query: 58   LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
            L  A  +F  +       + A++ G A   +   A+  + QM     R    T S  LK 
Sbjct: 583  LQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKV 642

Query: 118  CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
            C     L E  ++ +++L  G+  D  +G  L+  Y+K G +  A++VFD+M  RDI SW
Sbjct: 643  CTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSW 702

Query: 178  NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            N +IAG AQ  L   AV+   +M+ + V  PN+ + +  L AC    A +EG ++H  I 
Sbjct: 703  NKIIAGYAQNGLGQTAVEFAYQMQEQDVV-PNKFSFVSLLNACSSFSALEEGKRVHAEIV 761

Query: 238  EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
            + +L  +V V  A+I MYAKCG   +A EVFDNI   K++VTWN M+ A+A HG   +AL
Sbjct: 762  KRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNI-IEKNVVTWNAMINAYAQHGLASKAL 820

Query: 298  ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
              F  M + G+KPD  ++ + L ACNHAGLV +G ++F+SM +  GV P ++HYG +V L
Sbjct: 821  GFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGL 880

Query: 357  LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
            LGRA R QEA  ++  +    D  +W+TLLGAC+++G++ +AE A+   +++ + N   +
Sbjct: 881  LGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVY 940

Query: 417  VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
            +LLSN+YAA  RWDDV ++R+ M+ R ++K PG S+IEV  +IH+F  +D+SH +  EIY
Sbjct: 941  ILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIY 1000

Query: 477  EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
             +L  +  +++E GY   T  VLHD+G+  +E +LC HSE+LA+A+GLI T   T I++F
Sbjct: 1001 AELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIF 1060

Query: 537  KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLRIC DCH   K ISK+  REII RD  RFH FK+G CSC+DYW
Sbjct: 1061 KNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 174/319 (54%), Gaps = 3/319 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++  LA       A   Y +M       +  T    L AC+   AL     IHSH+ 
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHIS 357

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             G  +D  +G  L+ +YA+ G++  A+++F  M  RD+ SWNA+IAG A+     EA+ 
Sbjct: 358 EDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMR 417

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           L+K+M+ EGV KP  VT L  L+AC +  A+ +G  IHE I    +  N  + NA+++MY
Sbjct: 418 LYKQMQSEGV-KPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMY 476

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            +CG L +A  VF+  + R  +++WN+M+   A HG    A +LF++M    ++PD++++
Sbjct: 477 RRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
            + L  C +   ++ G ++   +   G++ ++    +++++  R G LQ+A ++  S+  
Sbjct: 536 ASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQH 595

Query: 376 GTDMVLWQTLLGACQLYGD 394
             D++ W  ++G C   G+
Sbjct: 596 -RDVMSWTAMIGGCADQGE 613



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/477 (25%), Positives = 227/477 (47%), Gaps = 15/477 (3%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ++L  CS++ A+     K + +H++  G   S    + + +I  YA     +L  A  LF
Sbjct: 335 SILNACSTSKALEAG--KLIHSHISEDGH--SSDVQIGNALISMYAR--CGDLPKARELF 388

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             +       +NA++ G A       A+  Y+QM     +   +T    L ACA   A  
Sbjct: 389 YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYA 448

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           +   IH  +LR G  ++  L   L+++Y + G ++ A+ VF+    RD+ SWN++IAG A
Sbjct: 449 DGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA 508

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q      A  LF+ M+ E + +P+ +T    L+ C +  A + G +IH  I E  L ++V
Sbjct: 509 QHGSYETAYKLFQEMQNEEL-EPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDV 567

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            + NA+I+MY +CG L  A  VF +++ R  +++W  M+   A  G+  +A+ELF QM  
Sbjct: 568 NLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQGEDMKAIELFWQMQN 626

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            G +P   ++ + L  C  +  +D+G ++   + N G + +     +++    ++G + +
Sbjct: 627 EGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTD 686

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASRKLVEMGSNNCGDFVLLSNLYA 424
           A ++   +    D+V W  ++      G  + A E A +   +    N   FV L N  +
Sbjct: 687 AREVFDKMP-SRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACS 745

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           ++   ++  RV   +  R ++       + VG  +   +    S  + +E+++ + E
Sbjct: 746 SFSALEEGKRVHAEIVKRKLQ-----GDVRVGAALISMYAKCGSQGEAQEVFDNIIE 797



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 187/396 (47%), Gaps = 15/396 (3%)

Query: 6   ALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           ++L  C S   + +   IH + ++A      + Q+ L  +  K           +L  A 
Sbjct: 133 SILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKC---------GDLPRAR 183

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F  I+      +N +L   A  +     +  + QM       D +T    L A     
Sbjct: 184 QVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPS 243

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            L E  +IH   +  G  +D  +GT L+ +  + G++ SAK+ F     RD+  +NALIA
Sbjct: 244 MLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIA 303

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
            LAQ     EA + + RM+ +GV   N  T L  L AC    A + G  IH +I E+   
Sbjct: 304 ALAQHGHNVEAFEQYYRMRSDGV-ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHS 362

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            +V + NA+I MYA+CG L KA E+F  +  ++ L++WN ++  +A   D   A+ L++Q
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQ 421

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M   GVKP  V++L  L AC ++    DG  +   +   G+K N     +++++  R G 
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGS 481

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           L EA ++ +  +   D++ W +++     +G  E A
Sbjct: 482 LMEAQNVFEG-TQARDVISWNSMIAGHAQHGSYETA 516



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 145/286 (50%), Gaps = 4/286 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ C R   L E  +IH+ ++      D  L   L+++Y K   ++ A +VF EM  RD+
Sbjct: 34  LQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDV 93

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWN+LI+  AQ     +A  LF+ M+  G F PN++T +  L AC      + G KIH 
Sbjct: 94  ISWNSLISCYAQQGFKKKAFQLFEEMQNAG-FIPNKITYISILTACYSPAELENGKKIHS 152

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            I +     +  V N+++ MY KCG L +A +VF  I  R  +V++NTM+  +A      
Sbjct: 153 QIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR-DVVSYNTMLGLYAQKAYVK 211

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
             L LF QM   G+ PD V+Y+  L A     ++D+G R+       G+  +++   ++V
Sbjct: 212 ECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALV 271

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG-DVEMAE 399
            +  R G +  A    K  +   D+V++  L+ A   +G +VE  E
Sbjct: 272 TMCVRCGDVDSAKQAFKGTA-DRDVVVYNALIAALAQHGHNVEAFE 316



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 160/328 (48%), Gaps = 3/328 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH +F+++       +N+++   A       A   + +M       + +T    L AC  
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              L    +IHS +++ G+  D  +  +LL +Y K G++  A++VF  +  RD+ S+N +
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +   AQ     E + LF +M  EG+  P++VT +  L A        EG +IH+   EE 
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGI-SPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG 259

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L+ ++ V  A++ M  +CG +D A + F     R  +V +N ++ A A HG    A E +
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADR-DVVVYNALIAALAQHGHNVEAFEQY 318

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M   GV  +  +YL+ L AC+ +  ++ G  + + ++  G   +++   +++ +  R 
Sbjct: 319 YRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC 378

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           G L +A ++  ++    D++ W  ++  
Sbjct: 379 GDLPKARELFYTMPK-RDLISWNAIIAG 405



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 96/184 (52%), Gaps = 5/184 (2%)

Query: 207 KPNEV---TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           +P E    T +  L  C       E  +IH  + E  +  ++ + N +I+MY KC  +  
Sbjct: 21  RPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLD 80

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A +VF  +  R+ +++WN+++  +A  G   +A +LFE+M  AG  P+ ++Y++ L AC 
Sbjct: 81  AHQVFKEMP-RRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACY 139

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
               +++G ++ + +   G + + +   S++ + G+ G L  A  +   +S   D+V + 
Sbjct: 140 SPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGIS-PRDVVSYN 198

Query: 384 TLLG 387
           T+LG
Sbjct: 199 TMLG 202


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/580 (40%), Positives = 347/580 (59%), Gaps = 14/580 (2%)

Query: 6   ALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           ++L  CS   A+     IH + ++A   T  +       VR+ ++  YA      L  A 
Sbjct: 412 SILGACSRPSALKQGRQIHDRIIKAGYITDDR-------VRTALLSMYA--KCGSLMDAR 462

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F +I+  +   +NA++       K  NAV  ++ +L+   + D+ T +  L  C    
Sbjct: 463 NVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPD 522

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           AL     + S ++R GF +D  +   L+ ++   G+++SA  +F++M  RD+ SWN +IA
Sbjct: 523 ALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIA 582

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G  Q      A D FK M+  GV KP+++T  G L AC    A  EG ++H  I E  LD
Sbjct: 583 GFVQHGENQFAFDYFKMMQESGV-KPDQITFTGLLNACASPEALTEGRRLHALITEAALD 641

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            +VVV   +I MY KCG +D A  VF N+  +K++ +W +M+  +A HG G  ALELF Q
Sbjct: 642 CDVVVGTGLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMITGYAQHGRGKEALELFCQ 700

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M + GVKPD ++++ AL AC HAGL+ +G+  F SM +  ++P M+HYG +VDL GRAG 
Sbjct: 701 MQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGL 760

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L EA + +  + +  D  LW  LLGACQ++ DVE+AE  ++K +E+  N+ G +V+LSN+
Sbjct: 761 LHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNI 820

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YAA   W +V ++RK M +R V K PG S+IEV G +H F + DK+H +  EI+ +L  +
Sbjct: 821 YAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRL 880

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
             ++K+ GY   T  VLHD+ + EKE+ALC+HSE+LA+A+GL+ T   T I + KNLR+C
Sbjct: 881 HMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTPPLTPIVISKNLRVC 940

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH   KLISK+  R+II RD  RFH FKDG CSC D+W
Sbjct: 941 GDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 199/389 (51%), Gaps = 19/389 (4%)

Query: 5   NALLQKCS-----SNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA 59
           ++LLQ C       +G   H HIK          + Q  +F + + +I  YA        
Sbjct: 108 SSLLQLCIKHKNLGDGERIHNHIK--------FSKIQPDIF-MWNMLISMYA--KCGNTN 156

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
            A  +F ++       +N +L G     +   A   + QM++   + D  T  + L ACA
Sbjct: 157 SAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACA 216

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
               + +  ++ S +L  G+  D  +GT L++++ K G +  A KVF+ +  RD+ +W +
Sbjct: 217 DAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTS 276

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I GLA+     +A +LF+ M+ EGV +P++V  +  L AC H  A ++G ++H  ++E 
Sbjct: 277 MITGLARHRQFKQACNLFQVMEEEGV-QPDKVAFVSLLKACNHPEALEQGKRVHARMKEV 335

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            LD  + V  A++ MY KCG ++ A EVF+ +K R ++V+W  M+  FA HG    A   
Sbjct: 336 GLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR-NVVSWTAMIAGFAQHGRMEEAFLF 394

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           F +M  +G++P+ V++++ L AC+    +  G ++ + +   G   + +   +++ +  +
Sbjct: 395 FNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAK 454

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            G L +A ++ + +S   ++V W  ++ A
Sbjct: 455 CGSLMDARNVFERIS-KQNVVAWNAMITA 482



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 176/342 (51%), Gaps = 3/342 (0%)

Query: 68  INAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET 127
           ++  +T   NA L  L+ + + + A+L    +     +    T S  L+ C +   L + 
Sbjct: 64  VDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDG 123

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
            +IH+H+       D  +   L+ +YAK G   SAK++FDEM  +D+ SWN L+ G  Q 
Sbjct: 124 ERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQH 183

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
               EA  L ++M  +GV KP++ T +  L AC       +G ++   I     D ++ V
Sbjct: 184 RRYEEAFRLHEQMVQDGV-KPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFV 242

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
             A+I+M+ KCG +D A +VF+N+  R+ L+TW +M+   A H    +A  LF+ M   G
Sbjct: 243 GTALINMHIKCGGVDDALKVFNNLP-RRDLITWTSMITGLARHRQFKQACNLFQVMEEEG 301

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
           V+PD V++++ L ACNH   ++ G R+   M   G+   +    +++ +  + G +++A 
Sbjct: 302 VQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDAL 361

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           ++   V  G ++V W  ++     +G +E A +   K++E G
Sbjct: 362 EVFNLVK-GRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG 402



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 139/271 (51%), Gaps = 2/271 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F  +   +   + A++ G A   +   A L++ +M+      + +T    L AC+R  A
Sbjct: 363 VFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSA 422

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L +  QIH  +++ G++ D  + T LL +YAK G ++ A+ VF+ +  +++ +WNA+I  
Sbjct: 423 LKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITA 482

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q      AV  F+ +  EG+ KP+  T    L  C    A + G  +   I     + 
Sbjct: 483 YVQHEKYDNAVATFQALLKEGI-KPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFES 541

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           ++ + NA++ M+  CG L  A  +F+++   + LV+WNT++  F  HG+   A + F+ M
Sbjct: 542 DLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHGENQFAFDYFKMM 600

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
             +GVKPD +++   L AC     + +G RL
Sbjct: 601 QESGVKPDQITFTGLLNACASPEALTEGRRL 631


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/544 (41%), Positives = 351/544 (64%), Gaps = 17/544 (3%)

Query: 53  SPLNELAYAHALF---RQINAPSTND---FNAVLRGLAHS--SKPTNAVLWYRQMLRGSH 104
           S  N + YA ++     Q   P ++D   FN ++R  A +  SKP +A+ +Y  M R + 
Sbjct: 165 SHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIRAFAQTTHSKP-HALRFYNTMRRHAV 223

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE-----I 159
             +  T  F LKACA ++ L     +H+ +++ GF  D  +  TL+ +Y    +      
Sbjct: 224 SPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGP 283

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
           VSAKKVFDE  V+D  +W+A+I G A+   ++ AV LF+ M++ GV  P+E+T++  L+A
Sbjct: 284 VSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVC-PDEITMVSVLSA 342

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
           C  LGA + G  +  YI  + +  +V +CNA+IDM+AKCG +D+A +VF  +K R ++V+
Sbjct: 343 CADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVR-TIVS 401

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           W +M++  A+HG G  A+ +F++M   GV PDDV+++  L AC+H+GLVD G   FN+M 
Sbjct: 402 WTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTME 461

Query: 340 NC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           N   + P ++HYG +VD+L RAGR+ EA + V+++ +  + V+W++++ AC   G++++ 
Sbjct: 462 NMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLG 521

Query: 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGV 458
           E  +++L+    ++  ++VLLSN+YA   RW+   +VR+ M  + ++K+PG + IE+   
Sbjct: 522 ESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNE 581

Query: 459 IHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKL 518
           I++F   DKSH +++EIYE ++E+  +IK  GY   TS VL DI EE+KE+AL  HSEKL
Sbjct: 582 IYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKL 641

Query: 519 AVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSC 578
           A+AF L+ST   T I++ KNLR+C DCH   K ISKVYNREI+VRDR RFH FK+G CSC
Sbjct: 642 AIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSC 701

Query: 579 KDYW 582
            D+W
Sbjct: 702 GDFW 705


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/578 (38%), Positives = 355/578 (61%), Gaps = 9/578 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL+KCS+         KQ  A +   G F        S ++   ALS    + YA ++F
Sbjct: 36  SLLKKCSNME-----EFKQSHARILKLGLFGDSF--CASNLVATCALSDWGSMDYACSIF 88

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           RQ++   +  FN ++RG         A++ Y++M     + D  T    LKACAR+ A+ 
Sbjct: 89  RQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVE 148

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E +Q+H+H+L+ G   D  +  +L+ +Y K GEI     VF++M  R +ASW+ALI   A
Sbjct: 149 EGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHA 208

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
              + S+ + L   M  EG ++  E  ++  L+AC HLGA   G  +H ++      +NV
Sbjct: 209 SLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNV 268

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           +V  ++I+MY KCG L K   +F  +  +K+ ++++ M+   A+HG G   L +F +M  
Sbjct: 269 IVETSLIEMYLKCGSLYKGMCLFQKM-AKKNKLSYSVMISGLAMHGYGREGLRIFTEMLE 327

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQ 364
            G++PDD+ Y+  L AC+HAGLV +G++ FN M    G++P ++HYG +VDL+GRAG++ 
Sbjct: 328 QGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKID 387

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           EA +++KS+ M  + VLW++LL A +++ +++  EIA+++L ++ S    D+V+LSN+YA
Sbjct: 388 EALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYA 447

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
             +RW+DV + R  M ++ + + PGFS +EV   +H+F + D  H +   +YE L ++ +
Sbjct: 448 QAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEW 507

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
           ++K  GY+  T+ VL D+ EEEK+  L  HS+KLA+A+ LI TS+ + I++ +NLR+C D
Sbjct: 508 QLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCND 567

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH   KLIS +++REI VRDR RFH FKDGACSC+DYW
Sbjct: 568 CHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/612 (38%), Positives = 362/612 (59%), Gaps = 48/612 (7%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPV--RSKIIEFYALSPLNELAYAHAL 64
           LL+ CS+   +  IH   L+ HL          F V   S++I F   S  N L YA  +
Sbjct: 23  LLECCSNARDLKIIHAHMLRTHL---------FFDVFAASRLIAFCIDSTTNLLHYAIRV 73

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
             QI  P+   +NA++RG + S  P N+  +Y + LR     D +T  F +KACA++   
Sbjct: 74  ASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENA 133

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI------------------------- 159
              +Q H   ++HGF  D  +  +L+ +YA VG+I                         
Sbjct: 134 PMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGY 193

Query: 160 ------VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
                  SA+++FD M  R++ +W+ +I+G A+ N   +AV+ F+ ++ EGV   NE  +
Sbjct: 194 HRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVA-NETVM 252

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           +G +++C HLGA   G+K HEY+   +L +N+++  AV+DMYA+CG ++KA  VF+ +  
Sbjct: 253 VGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLP- 311

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
            K ++ W  ++   A+HG   +AL  F +M + G  P D+++ A L AC+HAG+V+ G+ 
Sbjct: 312 EKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLE 371

Query: 334 LFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
           +F SM  + GV+P ++HYG +VDLLGRAG+L++A   V  + +  +  +W+ LLGAC+++
Sbjct: 372 IFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIH 431

Query: 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSY 452
            +VE+ E   + L+EM     G +VLLSN+YA   +W DV  +R+ MK++ V+K PG+S 
Sbjct: 432 KNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSL 491

Query: 453 IEVGGVIHKFFTSDKSHVKWREIYEKL--DEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           IE+ G +H+F   DK+H +  +I E++  D I+ KIK  GY   T+  + DI EEEKE A
Sbjct: 492 IEIDGKVHEFTIGDKTHPEIEKI-ERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGA 550

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           L  HSEKLA+A+G++     T I++ KNLR+C DCH   KLISKV+  E+IVRDR RFH 
Sbjct: 551 LHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHH 610

Query: 571 FKDGACSCKDYW 582
           FK+G CSC DYW
Sbjct: 611 FKEGTCSCMDYW 622


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/549 (40%), Positives = 338/549 (61%), Gaps = 33/549 (6%)

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           + ++  +   +N+V+  LA S     A+  +  M + S + +  T   A+K+C+ +L L 
Sbjct: 34  KYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLH 93

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE----------------- 168
              Q H   L  GF  D  + + L+D+Y+K GE+  A+ +FDE                 
Sbjct: 94  SGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYV 153

Query: 169 --------------MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
                         M  RD+ SWN++IA  AQ  +++E++++F RM  +G    N VT+ 
Sbjct: 154 QNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLS 213

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L AC H G+ + G  IH+ + +  L+ NV V  ++IDMY KCG ++ A + FD ++  
Sbjct: 214 AVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR-E 272

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           K++ +W+ MV  + +HG    ALE+F +M  AGVKP+ +++++ L AC+HAGL+++G   
Sbjct: 273 KNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHW 332

Query: 335 FNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           F +M++   V+P ++HYG +VDLLGRAG L+EA D++K + +  D V+W  LLGAC+++ 
Sbjct: 333 FKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHK 392

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           +V++ EI++RKL E+   NCG +VLLSN+YA   RW+DV R+R  MKN  + K PGFS +
Sbjct: 393 NVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLV 452

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           ++ G +H F   D+ H +  +IYE L+++  K++E GY    + VLHD+G EEKE  L  
Sbjct: 453 DIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRV 512

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEKLAVAFG+++T   T+I + KNLR+C DCH  IK ISK+ +REI+VRD  RFH F+D
Sbjct: 513 HSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRD 572

Query: 574 GACSCKDYW 582
           G CSC DYW
Sbjct: 573 GLCSCGDYW 581



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +F+    + ++ +WN+++   A  GD   AL  F  M +  +KP+  ++  A+ +C+   
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            +  G +        G +P++    ++VD+  + G L++A  +   +S   ++V W +++
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISH-RNIVSWTSMI 149


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/523 (40%), Positives = 334/523 (63%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH LF ++       +NA++ G + +S+   A+ ++ +M     + +++T    L ACA 
Sbjct: 275 AHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAH 334

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL +  QIH + +R GF ++ ++G  L+++YAK G + SA K+F+ M  +++ +WNA+
Sbjct: 335 LFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAI 394

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I+G +Q     EA+ LF  M+ +G+ KP+   ++  L AC H  A ++G +IH Y     
Sbjct: 395 ISGYSQHGHPHEALALFIEMQAQGI-KPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSG 453

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
            + NVVV   ++D+YAKCG ++ A ++F+ +   + +V+W TM++A+ +HG G  AL LF
Sbjct: 454 FESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIHGHGEDALALF 512

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGR 359
            +M   G K D +++ A L AC+HAGLVD G++ F  M ++ G+ P ++HY  +VDLLGR
Sbjct: 513 SKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGR 572

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L EA  I+K++S+  D  +W  LLGAC+++ ++E+ E A++ L E+  +N G +VLL
Sbjct: 573 AGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLL 632

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YA  +RW+DV ++RK MK + VKK PG S + V   +  F   D++H +  +IY  L
Sbjct: 633 SNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAML 692

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           + +  ++++ GY   T+  L D+ EE KEN L  HSEKLA++FG+I+TS    I++ KNL
Sbjct: 693 EILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNL 752

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH+  K ISK+  REIIVRD  RFH  K+G CSC DYW
Sbjct: 753 RVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/353 (31%), Positives = 197/353 (55%), Gaps = 3/353 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  +F ++       +NA++ G + + +P  A+  + +M     + ++ T    +  
Sbjct: 171 LENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPV 230

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA +LAL +  QIH + +R G  +D L+   L+++YAK G + +A K+F+ M +RD+ASW
Sbjct: 231 CAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASW 290

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NA+I G +  +   EA+  F RM++ G+ KPN +T++  L AC HL A ++G +IH Y  
Sbjct: 291 NAIIGGYSLNSQHHEALAFFNRMQVRGI-KPNSITMVSVLPACAHLFALEQGQQIHGYAI 349

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
               + N VV NA+++MYAKCG ++ A+++F+ +  +K++V WN ++  ++ HG    AL
Sbjct: 350 RSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAIISGYSQHGHPHEAL 408

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
            LF +M   G+KPD  + ++ L AC H   ++ G ++       G + N+     +VD+ 
Sbjct: 409 ALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIY 468

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
            + G +  A  + + +    D+V W T++ A  ++G  E A     K+ E G+
Sbjct: 469 AKCGNVNTAQKLFERMPE-QDVVSWTTMILAYGIHGHGEDALALFSKMQETGT 520



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 180/366 (49%), Gaps = 25/366 (6%)

Query: 49  FYALSPLNELAYAHALFRQINAPSTNDFNAVLRG--LAHSSKPTNAVLW----------- 95
           FY  SPL   +   A  R+    +T + +A         +    NAV+W           
Sbjct: 41  FYGPSPL-PTSTVVAQLRRNKVKTTREVSACANQTQFTQTDIRNNAVVWKETIIGYVKNG 99

Query: 96  --------YRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGT 147
                   Y QM R     D L     +KAC     L    ++H  ++  GF +D ++GT
Sbjct: 100 FWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGT 159

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
            L  +Y K G + +A++VFD M  RD+ SWNA+IAG +Q     EA+ LF  M++ G+ K
Sbjct: 160 ALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGI-K 218

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           PN  T++  +  C HL A ++G +IH Y     ++ +V+V N +++MYAKCG ++ A ++
Sbjct: 219 PNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKL 278

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           F+ +  R  + +WN ++  ++++     AL  F +M   G+KP+ ++ ++ L AC H   
Sbjct: 279 FERMPIR-DVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFA 337

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           ++ G ++       G + N     ++V++  + G +  A  + + +    ++V W  ++ 
Sbjct: 338 LEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPK-KNVVAWNAIIS 396

Query: 388 ACQLYG 393
               +G
Sbjct: 397 GYSQHG 402


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/579 (40%), Positives = 359/579 (62%), Gaps = 10/579 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L+Q C S    S   +KQ+ A     G       P  +K + F  +S    +++A  +F
Sbjct: 39  SLVQLCGS----SQSKLKQIHAFSIRHGVPPQN--PDFNKHLIFALVSLSAPMSFAAQIF 92

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLAL 124
            QI AP+   +N ++RG A S  P+ AV  + QM   S    D  T  F  KA A+++ +
Sbjct: 93  NQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDV 152

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
                IHS V+R+GF +   +  +L+ +Y+  G   SA +VF+ M  RD  +WN++I G 
Sbjct: 153 SLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGF 212

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           A   + +EA+ L++ M  EGV +P+  T++  L+AC  LGA   G+++H Y+ +  L  N
Sbjct: 213 ALNGMPNEALTLYREMGSEGV-EPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQN 271

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
               NA++D+Y+KCG    A +VFD ++ R S+V+W ++++  AV+G G  AL+LF ++ 
Sbjct: 272 QHASNALLDLYSKCGNFRDAQKVFDEMEER-SVVSWTSLIVGLAVNGLGNEALKLFGELE 330

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRL 363
           R G+KP +++++  L AC+H G++D+G   F  M    G+ P ++H+G +VDLL RAG++
Sbjct: 331 RQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKV 390

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            +A D ++++ +  + V+W+TLLGAC ++G +E+ E+A  ++  +   + GDFVLLSNLY
Sbjct: 391 GDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLY 450

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A+  RW DV  VRK M  + VKK PG+S +E+   +++F   D+SH +  E Y  L +I 
Sbjct: 451 ASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKIT 510

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
             +K  GY   T  VL DI EEEKE AL +H+EK+A+AF L++T   T I++ KNLR+C 
Sbjct: 511 QLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCA 570

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH  IKLISKV+ REIIVRDR RFH FKDG+CSCKDYW
Sbjct: 571 DCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/557 (41%), Positives = 353/557 (63%), Gaps = 13/557 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           +QS +F V S +I  Y  S   +L  A  +F +I   +   + +++RG   +    +AV 
Sbjct: 107 YQSDIF-VSSALIVMY--STCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVS 163

Query: 95  WYRQMLRGSHRSD------ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
            ++ +L   +  D      ++     + AC+RV A   T  IHS V++ GF     +G T
Sbjct: 164 LFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNT 223

Query: 149 LLDVYAKVGE--IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           LLD YAK GE  +  A+K+FD++  +D  S+N++++  AQ  +++EA ++F+R+    V 
Sbjct: 224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVV 283

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
             N +T+   L A  H GA + G  IH+ +    L+ +V+V  ++IDMY KCG ++ A +
Sbjct: 284 TFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARK 343

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
            FD +K  K++ +W  M+  + +HG   +ALELF  M  +GV+P+ +++++ L AC+HAG
Sbjct: 344 AFDRMK-NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402

Query: 327 LVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           L  +G R FN+M    GV+P ++HYG +VDLLGRAG LQ+A D+++ + M  D ++W +L
Sbjct: 403 LHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSL 462

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           L AC+++ +VE+AEI+  +L E+ S+NCG ++LLS++YA   RW DV RVR  MKNR + 
Sbjct: 463 LAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLV 522

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K PGFS +E+ G +H F   D+ H +  +IYE L E+  K+ E GY + TS V HD+ EE
Sbjct: 523 KPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE  L  HSEKLA+AFG+++T   +++ V KNLR+C DCH+VIKLISK+ +RE +VRD 
Sbjct: 583 EKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDA 642

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH FKDG CSC DYW
Sbjct: 643 KRFHHFKDGGCSCGDYW 659



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 166/340 (48%), Gaps = 16/340 (4%)

Query: 42  VRSKIIEFYALSPL------NELAYAHALF-RQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           VRSK   F ++S L       E      LF R ++      +N+V+  LA S     A+L
Sbjct: 3   VRSKKALFCSVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALL 62

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
            +  M + S      +   A+KAC+ +  +F   Q H      G+ +D  + + L+ +Y+
Sbjct: 63  AFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYS 122

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM-----EGVFKPN 209
             G++  A+KVFDE+  R+I SW ++I G      A +AV LFK + +     +     +
Sbjct: 123 TCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLD 182

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL--LDKAFEV 267
            + ++  ++AC  + A    + IH ++ +   D  V V N ++D YAK G   +  A ++
Sbjct: 183 SMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKI 242

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAG 326
           FD I   K  V++N+++  +A  G    A E+F ++ +  V   + ++    L A +H+G
Sbjct: 243 FDQI-VDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSG 301

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            +  G  + + +   G++ ++    S++D+  + GR++ A
Sbjct: 302 ALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETA 341


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/555 (41%), Positives = 341/555 (61%), Gaps = 6/555 (1%)

Query: 29  LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSK 88
           L   G F   +F V++ ++  YA      L  AH +F  I   +   + A++ G     K
Sbjct: 137 LVVKGGFDCDVF-VKTSLVCLYA--KCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGK 193

Query: 89  PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
              A+  +R++L  +   D+ T    L AC ++  L     IH  ++  G + +  +GT+
Sbjct: 194 FREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTS 253

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L+D+YAK G +  A+ VFD M  +DI SW A+I G A   L  EA+DLF +M+ E V KP
Sbjct: 254 LVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENV-KP 312

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           +  TV+G L+AC  LGA + G+ +   +       N V+  A+ID+YAKCG + +A+EVF
Sbjct: 313 DCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVF 372

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
             +K  K  V WN ++   A++G    +  LF Q+ + G+KPD  +++  LC C HAGLV
Sbjct: 373 KGMK-EKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLV 431

Query: 329 DDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           D+G R FNSM     + P+++HYG +VDLLGRAG L EA  +++++ M  + ++W  LLG
Sbjct: 432 DEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLG 491

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           AC+++ D ++AE+A ++L+E+   N G++VLLSN+Y+A  +WD+  +VR +M  + ++K 
Sbjct: 492 ACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKP 551

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
           PG S+IEV G++H+F   DK H    +IY KLDE+  K+K  GY   T  VL DI EEEK
Sbjct: 552 PGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEK 611

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           E+ L  HSEKLA+AFGLIS +    I+V KNLR+C DCH  IKLIS +  REI VRD  R
Sbjct: 612 EHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNR 671

Query: 568 FHRFKDGACSCKDYW 582
           FH F++G+CSC DYW
Sbjct: 672 FHCFREGSCSCNDYW 686



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 188/354 (53%), Gaps = 23/354 (6%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
            ++  Y   LF QI  P+   +N ++RGL  +    +A+ +Y  M       +  T  F 
Sbjct: 59  FSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFV 118

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           LKACAR+L L   ++IH+ V++ GF  D  + T+L+ +YAK G +  A KVFD++  +++
Sbjct: 119 LKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNV 178

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW A+I+G        EA+D+F+R+ +E    P+  T++  L+AC  LG    G+ IH+
Sbjct: 179 VSWTAIISGYIGVGKFREAIDMFRRL-LEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHK 237

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            I E  +  NV V  +++DMYAKCG ++KA  VFD +   K +V+W  M+  +A++G   
Sbjct: 238 CIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMP-EKDIVSWGAMIQGYALNGLPK 296

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNH----------AGLVDDGVRLFNSMANCGVK 344
            A++LF QM R  VKPD  + +  L AC            +GLVD    L+N +      
Sbjct: 297 EAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGT--- 353

Query: 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
                  +++DL  + G +  A ++ K +    D V+W  ++    + G V+++
Sbjct: 354 -------ALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAIISGLAMNGYVKIS 399


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/608 (39%), Positives = 372/608 (61%), Gaps = 41/608 (6%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LLQ+CS+   +  IH + L+     TG    ++ P  SK++ F A      LAYA  +F 
Sbjct: 24  LLQRCSNMEELRQIHGQMLK-----TGLILDEI-PA-SKLLAFCASPNSGSLAYARTVFD 76

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           +I  P+T  +N ++RG ++S +P  A+L Y  ML  S   +A T  F LKAC+ + A  E
Sbjct: 77  RIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEE 136

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG--- 183
           T QIH+H+++ GF ++     +LL+VY+K G+I SA+ +FD++  RD  SWN++I G   
Sbjct: 137 TQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTK 196

Query: 184 -------------LAQGNLAS---------------EAVDLFKRMKMEGVFKPNEVTVLG 215
                        + + N+ S               EA++LF RM+  G+ K + V ++ 
Sbjct: 197 CGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGI-KLDNVALVS 255

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            L AC  LG   +G  IH YI++  ++++ ++   +IDMYAKCG L++A EVF  ++  K
Sbjct: 256 TLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME-EK 314

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
            +  W  M+  +A+HG G  ALE F +M  AGV+P+ +++   L AC+HAGLV +   LF
Sbjct: 315 GVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLF 374

Query: 336 NSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
            SM    G KP+++HYG +VDLLGRAG L+EA ++++++ +  +  +W  LL AC ++G+
Sbjct: 375 ESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 434

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           +E+ +   + L+++   + G ++ L++++AA   W+   RVR+ MK + V K+PG S I 
Sbjct: 435 LELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVIS 494

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYH 514
           V G  H+F   D+SH + +EI   L++I+ +++E GY      +L D+ ++EKE A+ +H
Sbjct: 495 VNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHH 554

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SEKLAV FGLIST    +I++ KNLR+C DCH VIKLISKVY REI++RDR RFH FKDG
Sbjct: 555 SEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDG 614

Query: 575 ACSCKDYW 582
            C+C DYW
Sbjct: 615 NCTCGDYW 622


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/557 (41%), Positives = 352/557 (63%), Gaps = 13/557 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           +QS +F V S +I  Y  S   +L  A  +F +I       + +++RG   +    +AV 
Sbjct: 107 YQSDIF-VSSALIVMY--STCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVS 163

Query: 95  WYRQMLRGSHRSD------ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
            ++ +L   +  D      ++     + AC+RV A   T  IHS V++ GF     +G T
Sbjct: 164 LFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNT 223

Query: 149 LLDVYAKVGE--IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           LLD YAK GE  +  A+K+FD++  +D  S+N++++  AQ  +++EA ++F+R+    V 
Sbjct: 224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVV 283

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
             N +T+   L A  H GA + G  IH+ +    L+ +V+V  ++IDMY KCG ++ A +
Sbjct: 284 TFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARK 343

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
            FD +K  K++ +W  M+  + +HG   +ALELF  M  +GV+P+ +++++ L AC+HAG
Sbjct: 344 AFDRMK-NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402

Query: 327 LVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           L  +G R FN+M    GV+P ++HYG +VDLLGRAG LQ+A D+++ + M  D ++W +L
Sbjct: 403 LHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSL 462

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           L AC+++ +VE+AEI+  +L E+ S+NCG ++LLS++YA   RW DV RVR  MKNR + 
Sbjct: 463 LAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLV 522

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K PGFS +E+ G +H F   D+ H +  +IYE L E+  K+ E GY + TS V HD+ EE
Sbjct: 523 KPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE  L  HSEKLA+AFG+++T   +++ V KNLR+C DCH+VIKLISK+ +RE +VRD 
Sbjct: 583 EKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDA 642

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH FKDG CSC DYW
Sbjct: 643 KRFHHFKDGGCSCGDYW 659



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 166/340 (48%), Gaps = 16/340 (4%)

Query: 42  VRSKIIEFYALSPL------NELAYAHALF-RQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           VRSK   F ++S L       E      LF R ++      +N+V+  LA S     A+L
Sbjct: 3   VRSKKALFCSVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALL 62

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
            +  M + S      +   A+KAC+ +  +F   Q H      G+ +D  + + L+ +Y+
Sbjct: 63  AFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYS 122

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM-----EGVFKPN 209
             G++  A+KVFDE+  RDI SW ++I G      A +AV LFK + +     +     +
Sbjct: 123 TCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLD 182

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL--LDKAFEV 267
            + ++  ++AC  + A    + IH ++ +   D  V V N ++D YAK G   +  A ++
Sbjct: 183 SMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKI 242

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAG 326
           FD I   K  V++N+++  +A  G    A E+F ++ +  V   + ++    L A +H+G
Sbjct: 243 FDQI-VDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSG 301

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            +  G  + + +   G++ ++    S++D+  + GR++ A
Sbjct: 302 ALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETA 341


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/578 (38%), Positives = 348/578 (60%), Gaps = 9/578 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL++C S         KQ+ AH+   G F        S ++   ALS    + YA ++F
Sbjct: 35  SLLKRCKSME-----EFKQVHAHILKLGLFYDSF--CGSNLVATCALSRWGSMEYACSIF 87

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           RQI  P + ++N ++RG  +S     A+L Y +ML      D  T  F LKAC+ + AL 
Sbjct: 88  RQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALK 147

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E +QIH+HV + G   D  +   L+++Y K G I  A  VF++M  + +ASW+++I   A
Sbjct: 148 EGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHA 207

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
              +  E + L   M  EG  +  E  ++ AL+AC HLG+   G  IH  +     ++NV
Sbjct: 208 SVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNV 267

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V  ++IDMY K G L+K   VF N+  +K+  ++  ++   A+HG G  AL +F  M  
Sbjct: 268 AVKTSLIDMYVKSGSLEKGLCVFQNM-AQKNRYSYTVIITGLAIHGRGREALSVFSDMLE 326

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQ 364
            G+ PDDV Y+  L AC+HAGLV++G++ FN +     +KP ++HYG +VDL+GRAG L+
Sbjct: 327 EGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLK 386

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
            A D++KS+ +  + V+W++LL AC+++ ++E+ EIA+  + ++  +N GD+++L+N+YA
Sbjct: 387 GAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYA 446

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
             ++W DV R+R  M  + + + PGFS +E    ++KF + DKS  +   IY+ + ++ +
Sbjct: 447 RAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEW 506

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
           ++K  GY    S VL D+ E+EK   L +HS+KLA+AF LI TSE + I++ +N+R+C D
Sbjct: 507 QLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCND 566

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH   K IS +Y REI VRDR RFH FKDG CSCKDYW
Sbjct: 567 CHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 136/276 (49%), Gaps = 8/276 (2%)

Query: 105 RSDALTCSFALKACA---RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA--KVGEI 159
           +S  L   F ++  +   R  ++ E  Q+H+H+L+ G   D+  G+ L+   A  + G +
Sbjct: 21  QSSELNAKFNVQGLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSM 80

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
             A  +F ++       +N +I G        EA+ L+  M   G+ +P+  T    L A
Sbjct: 81  EYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGI-EPDNFTYPFVLKA 139

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
           C  LGA KEG +IH ++ +  L+ +V V N +I+MY KCG ++ A  VF+ +   KS+ +
Sbjct: 140 CSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMD-EKSVAS 198

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL-AALCACNHAGLVDDGVRLFNSM 338
           W++++ A A        L L   M   G    + S L +AL AC H G  + G  +   +
Sbjct: 199 WSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGIL 258

Query: 339 ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
                + N+    S++D+  ++G L++   + ++++
Sbjct: 259 LRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMA 294


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/581 (39%), Positives = 360/581 (61%), Gaps = 9/581 (1%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
             +++L+ CS   A+     +Q+ A +  +G F+S  F V + +I+ YA     ++  A 
Sbjct: 123 TFSSVLKACSRMKALREG--EQVHALILKSG-FKSNEF-VENTLIQMYA--NCGQIGVAR 176

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F  +   S   +N++L G   +      V  +R++L      D +T    L AC R+ 
Sbjct: 177 HVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLA 236

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            L     I  +++  G   +  L T+L+D+YAK G++ +A+K+FDEM  RD+ +W+A+I+
Sbjct: 237 NLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMIS 296

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G AQ +   EA++LF  M+   V+ PNEVT++  L +C  LGA++ G  +H YI+++++ 
Sbjct: 297 GYAQADRCKEALNLFHEMQKGNVY-PNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMK 355

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
           + V +   +ID YAKCG +D++ EVF  +   K++ TW  ++   A +G+G  ALE F  
Sbjct: 356 LTVTLGTQLIDFYAKCGYIDRSVEVFKEMSF-KNVFTWTALIQGLANNGEGKMALEFFSS 414

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAG 361
           M    VKP+DV+++  L AC+HA LVD G  LFNSM  +  ++P ++HYG +VD+LGRAG
Sbjct: 415 MLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAG 474

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L+EA   + ++    + V+W+TLL +C+ + ++EMAE +   +  +   + GD++LLSN
Sbjct: 475 FLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSN 534

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
            YA   R +D  RVR  +K +++KK+PG S IE+ GV+H+FF+ D  H   +EI++ LD+
Sbjct: 535 TYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDK 594

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           +M +IK  GY   T     +  EE KE ++ +HSEKLA+A+GLI TS  T+I++ KNLR+
Sbjct: 595 MMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRM 654

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CRDCH+  K IS+V+ R IIVRDR RFH FKDG CSC DYW
Sbjct: 655 CRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 212/392 (54%), Gaps = 10/392 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +LQ+C +   +  +H     AHL  T +    +  +   ++E  AL   + + YA ++F 
Sbjct: 27  ILQQCKTPKDLQQVH-----AHLLKTRRLLDPI--ITEAVLESAALLLPDTIDYALSIFN 79

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            I+ P ++ +N ++RGLA    P NA+L +++M   S + D  T S  LKAC+R+ AL E
Sbjct: 80  HIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALRE 139

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             Q+H+ +L+ GF ++  +  TL+ +YA  G+I  A+ VFD M  R I +WN++++G  +
Sbjct: 140 GEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTK 199

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
             L  E V LF+++ +E   + ++VT++  L ACG L   + G+ I EYI  + L  N  
Sbjct: 200 NGLWDEVVKLFRKI-LELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNT 258

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           +  ++IDMYAKCG +D A ++FD +  ++ +V W+ M+  +A       AL LF +M + 
Sbjct: 259 LTTSLIDMYAKCGQVDTARKLFDEMD-KRDVVAWSAMISGYAQADRCKEALNLFHEMQKG 317

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            V P++V+ ++ L +C   G  + G  +   +    +K  +     ++D   + G +  +
Sbjct: 318 NVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRS 377

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            ++ K +S   ++  W  L+      G+ +MA
Sbjct: 378 VEVFKEMSF-KNVFTWTALIQGLANNGEGKMA 408


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/557 (41%), Positives = 351/557 (63%), Gaps = 13/557 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           +QS +F V S +I  Y  S   +L  A  +F +I   +   + +++RG   +    +AV 
Sbjct: 107 YQSDIF-VSSALIVMY--STCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVS 163

Query: 95  WYRQMLRGSHRSDA------LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
            ++ +L   +  DA      +     + AC+RV A   T  IHS V++ GF     +G T
Sbjct: 164 LFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNT 223

Query: 149 LLDVYAKVGE--IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           LLD YAK GE  +  A+K+FD++  +D  S+N++++  AQ  +++EA D+F+R+  E V 
Sbjct: 224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVV 283

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
             N +T+   L A  H GA + G  IH+ +    L+ +V+V  ++IDMY KCG ++ A  
Sbjct: 284 TFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARL 343

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
            FD +K  K++ +W  M+  + +HG   +ALELF  M  +GV+P+ +++++ L AC+HAG
Sbjct: 344 AFDRMK-NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402

Query: 327 LVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           L D G   FN+M    GV+P ++HYG +VDLLGRAG LQ+A D+++ + M  D ++W +L
Sbjct: 403 LHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSL 462

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           L AC+++ +VE+AEI+  +L E+  +NCG ++LLS++YA   RW DV RVR  MKNR + 
Sbjct: 463 LAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLV 522

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K PGFS +E+ G +H F   D+ H +  +IYE L E+  K+ E GY + TS V HD+ EE
Sbjct: 523 KPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE  L  HSEKLA+AFG+++T   +++ V KNLR+C DCH+VIKLISK+ +RE +VRD 
Sbjct: 583 EKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDA 642

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH FKDG CSC DYW
Sbjct: 643 KRFHHFKDGFCSCGDYW 659



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 154/309 (49%), Gaps = 9/309 (2%)

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           R ++      +N+V+  LA S     A+  +  M + S      +   A+KAC+ +L +F
Sbjct: 34  RYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIF 93

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              Q H      G+ +D  + + L+ +Y+  G++  A+KVFDE+  R+I SW ++I G  
Sbjct: 94  SGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYD 153

Query: 186 QGNLASEAVDLFKRMKME-----GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
               A +AV LFK + +E          + + ++  ++AC  + A    + IH ++ +  
Sbjct: 154 LNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRG 213

Query: 241 LDMNVVVCNAVIDMYAKCGL--LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            D  V V N ++D YAK G   +  A ++FD I   K  V++N+++  +A  G    A +
Sbjct: 214 FDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQI-VDKDRVSYNSIMSVYAQSGMSNEAFD 272

Query: 299 LFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           +F ++ +  V   + ++    L A +H+G +  G  + + +   G++ ++    S++D+ 
Sbjct: 273 VFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMY 332

Query: 358 GRAGRLQEA 366
            + GR++ A
Sbjct: 333 CKCGRVETA 341


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/563 (42%), Positives = 339/563 (60%), Gaps = 33/563 (5%)

Query: 26  QAHLTTTGQFQSKLFPVRSKIIEFYALS-PLNELAYAHALFRQINAPSTNDFNAVLRGLA 84
           Q H      F   LF     + +  + S  L  L YA ++FR  + P+   FNA++RGLA
Sbjct: 55  QLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLA 114

Query: 85  HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADAL 144
            +S+   +V  +  MLR S R D LT  F LK+ A ++ +     +H  V++ G   D+ 
Sbjct: 115 ENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSF 174

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS----WNALIAGLAQGNLASEAVDLFKRM 200
           +  +L+D+Y K+GE+    ++FDE   R+ A     WN +                    
Sbjct: 175 VRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNGV-------------------- 214

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
                 +PN++TV+ AL AC  +GA + G++IH Y+      +N  +  A++DMYAKCG 
Sbjct: 215 ------RPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGN 268

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +  A  VF   K  K L+TW+ M+  +A+HG   +AL+ F +M  AG+ PD+V +LA L 
Sbjct: 269 IKSASRVFVETKG-KDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILT 327

Query: 321 ACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC+H+G VD G+  F SM  +  ++P MKHY  +VDLLGRAGRL EA   ++S+ +  D 
Sbjct: 328 ACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDF 387

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           V+W  L  AC+ + ++EMAE+ + KL+++   + G +V LSN+YAA  RW+DV RVR  M
Sbjct: 388 VIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLM 447

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           KNR V+K PG+SYIEV G +H F   D +HV+  EI  KL+EI    K+ GY   T+ VL
Sbjct: 448 KNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVL 507

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           H+I EEEKE+AL  HSEKLA+AFGLIST+  ++I++ KNLR+C DCH ++K  SK+  RE
Sbjct: 508 HNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRRE 567

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           II+RD  RFH FKDG CSC DYW
Sbjct: 568 IILRDIKRFHHFKDGTCSCGDYW 590


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/593 (37%), Positives = 357/593 (60%), Gaps = 15/593 (2%)

Query: 1   MANLNALLQKCSSNGAVSHIHI----------KQLQAHLTTTGQFQSKLFPVRSKIIEFY 50
           + +++ +  K S  G +S  H+          K + A++   G+      P+ + +I+ Y
Sbjct: 213 LRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMY 272

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
                  LAYA  +F  ++  S   + A++    H +     V  + +ML      + +T
Sbjct: 273 V--KCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEIT 330

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
               +K C    AL     +H+  LR+GF    +L T  +D+Y K G++ SA+ VFD   
Sbjct: 331 MLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFK 390

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            +D+  W+A+I+  AQ N   EA D+F  M   G+ +PNE T++  L  C   G+ + G 
Sbjct: 391 SKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGI-RPNERTMVSLLMICAKAGSLEMGK 449

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            IH YI ++ +  ++++  + +DMYA CG +D A  +F     R  +  WN M+  FA+H
Sbjct: 450 WIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDR-DISMWNAMISGFAMH 508

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKH 349
           G G  ALELFE+M   GV P+D++++ AL AC+H+GL+ +G RLF+ M +  G  P ++H
Sbjct: 509 GHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEH 568

Query: 350 YGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           YG +VDLLGRAG L EA +++KS+ M  ++ ++ + L AC+L+ ++++ E A+++ + + 
Sbjct: 569 YGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLE 628

Query: 410 SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
            +  G  VL+SN+YA+  RW DV  +R+AMK+  + K PG S IEV G++H+F   D+ H
Sbjct: 629 PHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREH 688

Query: 470 VKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSE 529
              +++YE +DE+  K+++ GY    SCVLH+I +E+K +AL YHSEKLA+A+GLIST+ 
Sbjct: 689 PDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAP 748

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
              I++ KNLR+C DCH+  KL+SK+Y REIIVRDR RFH FK+G+CSC DYW
Sbjct: 749 GVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 148/302 (49%), Gaps = 5/302 (1%)

Query: 89  PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
           P +A   Y  M       D       LKAC  + +     ++H  V+++GF  D  +   
Sbjct: 105 PADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNA 164

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L+ +Y++VG +  A+ +FD++  +D+ SW+ +I    +  L  EA+DL + M +  V KP
Sbjct: 165 LIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRV-KP 223

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYI-REERLDMN-VVVCNAVIDMYAKCGLLDKAFE 266
           +E+ ++        L   K G  +H Y+ R  +   + V +C A+IDMY KC  L  A  
Sbjct: 224 SEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARR 283

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VFD +  + S+++W  M+ A+    +    + LF +M   G+ P++++ L+ +  C  AG
Sbjct: 284 VFDGLS-KASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAG 342

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            ++ G  L       G   ++    + +D+ G+ G ++ A  +  S     D+++W  ++
Sbjct: 343 ALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFK-SKDLMMWSAMI 401

Query: 387 GA 388
            +
Sbjct: 402 SS 403


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/595 (39%), Positives = 350/595 (58%), Gaps = 39/595 (6%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           +KQ+   L   G   ++   +  + +   A+     L Y++ +  Q   P+    N+++R
Sbjct: 25  LKQIHTQLVINGLLNNR--ELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSMIR 82

Query: 82  GLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
             + S  P  +  +Y ++L+ +     D  T +F ++ CA+  A      +H  +++HGF
Sbjct: 83  AYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQS-ACEAGPAVHGALIKHGF 141

Query: 140 -------------------------------LADALLGTTLLDVYAKVGEIVSAKKVFDE 168
                                            D +  TT++   AK G+I  A+ +FD 
Sbjct: 142 EYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDS 201

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
           M  RD  SWNA+IAG AQ   + EA++LFK M+M+GV K NEV+++  + AC HLGA  +
Sbjct: 202 MPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGV-KVNEVSMISVVTACTHLGALDQ 260

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G   H YI + ++ M V +  A++DMY KCG +D+A +VF  +   K++ TW+T +   A
Sbjct: 261 GKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMN-EKNVYTWSTAIGGLA 319

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNM 347
           ++G G + LELF  M   G+ P+++++++ L  C+  G VD+G   F+SM  + G++P +
Sbjct: 320 MNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRL 379

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
           +HYG +VDL GRAGRL+EA + + ++ +      W  LL AC++Y ++E+ E ASRKL+E
Sbjct: 380 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIE 439

Query: 408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDK 467
           +   N G +V LSN+YA    WD V  VR++MK   + K+PG S +EV G +H+FF+ DK
Sbjct: 440 VEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDK 499

Query: 468 SHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
           SH  +  I     EI  ++K  GY A T+ VL DI EEEKE+ALC HSEK+A+AFGL S 
Sbjct: 500 SHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSL 559

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            E   I++ KNLRIC DCHDV K+ISK++ REIIVRDR RFH FKDG CSCKD+W
Sbjct: 560 KEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/639 (38%), Positives = 357/639 (55%), Gaps = 65/639 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            +L   ++  + S  H+KQ+ A    TG FQ     V   +++ YA    + L +A  +F
Sbjct: 30  TILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHY--VSGTLVKCYANPHFSNLNFALKVF 87

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             +  P+   FN +++G   +++P  A+  Y +M+    R +  T     KAC    A  
Sbjct: 88  EYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAE 147

Query: 126 ETLQIHSHVLRHGFLADA---------------------LLG----------TTLLDVYA 154
           E +Q+H+HV++ G   D                      +LG            ++D Y 
Sbjct: 148 EGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYL 207

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK----------MEG 204
           K GE+ +AK++F  M  +++ SWN +++G+A+  +  EA +LF  MK          ++G
Sbjct: 208 KCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDG 267

Query: 205 VFK--------------------PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
             K                    P +  +   LAAC +LGA  +G  IH Y+       +
Sbjct: 268 YIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFD 327

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
            V+  A++DMYAKCG LD A++VF+ ++ +K + TWN M+    +HG    A+ELF +M 
Sbjct: 328 AVLGTALVDMYAKCGRLDMAWDVFEKME-KKEVFTWNAMICGLGMHGRAEDAIELFFKMQ 386

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRL 363
           +   +P+ ++ L  L AC H+G+VD+G+R+FNSM    G++P M+HYG VVDLLGRAG L
Sbjct: 387 KQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLL 446

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            EA +++ S+ M     +W  LLGAC+ +GDVE+ E   + L+E+   N G + LLSN+Y
Sbjct: 447 GEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIY 506

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A   RWDDV  VRK MK R VK   G S I+  GV+H+F   D SH + + IY  L  ++
Sbjct: 507 ARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMI 566

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            ++K  G++  TS VL DI EEEKE  L YHSEKLA+AFGLI+T   T+I V KNLR+C 
Sbjct: 567 KRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCE 626

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH   KLIS+VY+REIIVRDR R+H FK G CSCKD+W
Sbjct: 627 DCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/560 (39%), Positives = 338/560 (60%), Gaps = 10/560 (1%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           Q+ +  T TG +      V +  I  Y  S   ++    ALFR+   P    +NA++ G 
Sbjct: 242 QIHSLATKTGCYSHDY--VLTGFISLY--SKCGKIKMGSALFREFRKPDIVAYNAMIHGY 297

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
             + +   ++  +++++    R  + T    +     ++ ++    IH + L+  FL+ A
Sbjct: 298 TSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIY---AIHGYCLKSNFLSHA 354

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            + T L  VY+K+ EI SA+K+FDE   + + SWNA+I+G  Q  L  +A+ LF+ M+ +
Sbjct: 355 SVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ-K 413

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
             F PN VT+   L+AC  LGA   G  +H+ +R    + ++ V  A+I MYAKCG + +
Sbjct: 414 SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAE 473

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A  +FD +  +K+ VTWNTM+  + +HG G  AL +F +M  +G+ P  V++L  L AC+
Sbjct: 474 ARRLFD-LMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACS 532

Query: 324 HAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           HAGLV +G  +FNSM +  G +P++KHY  +VD+LGRAG LQ A   ++++S+     +W
Sbjct: 533 HAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVW 592

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
           +TLLGAC+++ D  +A   S KL E+  +N G  VLLSN+++A   +     VR+  K R
Sbjct: 593 ETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKR 652

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            + K PG++ IE+G   H F + D+SH + +EIYEKL+++  K++E GY   T   LHD+
Sbjct: 653 KLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDV 712

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            EEE+E  +  HSE+LA+AFGLI+T   T I++ KNLR+C DCH V KLISK+  R I+V
Sbjct: 713 EEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVV 772

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFH FKDG CSC DYW
Sbjct: 773 RDANRFHHFKDGVCSCGDYW 792



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 132/278 (47%), Gaps = 2/278 (0%)

Query: 52  LSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALT 110
           LS L  + YA  +F  +  P    FN ++RG + +  P +++  +  + + +  + ++ T
Sbjct: 62  LSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSST 121

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
            +FA+ A +          IH   +  G  ++ LLG+ ++ +Y K   +  A+KVFD M 
Sbjct: 122 YAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMP 181

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            +D   WN +I+G  +  +  E++ +F+ +  E   + +  T+L  L A   L   + G 
Sbjct: 182 EKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGM 241

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           +IH    +     +  V    I +Y+KCG +     +F   + +  +V +N M+  +  +
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFR-KPDIVAYNAMIHGYTSN 300

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
           G+   +L LF+++  +G +    + ++ +    H  L+
Sbjct: 301 GETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI 338



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/271 (19%), Positives = 116/271 (42%), Gaps = 3/271 (1%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           Q H+ ++ HGF  D  L T L    + +G I  A+ +F  +   D+  +N L+ G +   
Sbjct: 38  QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
               ++ +F  ++     KPN  T   A++A       + G  IH     +  D  +++ 
Sbjct: 98  SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLG 157

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAG 307
           + ++ MY K   ++ A +VFD +   K  + WNTM+  +  +     ++++F  +   + 
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMP-EKDTILWNTMISGYRKNEMYVESIQVFRDLINESC 216

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
            + D  + L  L A      +  G+++ +     G   +       + L  + G+++   
Sbjct: 217 TRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGS 276

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            + +      D+V +  ++      G+ E++
Sbjct: 277 ALFREFR-KPDIVAYNAMIHGYTSNGETELS 306


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/561 (39%), Positives = 346/561 (61%), Gaps = 7/561 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           + +QA+    G    +   V S +I  YA     ++A A  LF  +       +NA++  
Sbjct: 139 RGIQAYAVKRGLMADRF--VLSSLIHMYA--SCRDVAAAQLLFDAVEENGVVMWNAIITA 194

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              +      V  ++ ML      D +T    + AC R+        +  +V   G + +
Sbjct: 195 YMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRN 254

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             L T L+D+YAK GE+  A+++FD M  RD+ +W+A+I+G  Q +   EA+ LF  M++
Sbjct: 255 RNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQL 314

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
             V +PN+VT++  L+AC  LGA + G  +H YIR +RL + +++  A++D YAKCG +D
Sbjct: 315 AEV-EPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCID 373

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A E F+++  + S  TW  ++   A +G G  ALELF  M +A ++P DV+++  L AC
Sbjct: 374 DAVEAFESMPVKNSW-TWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMAC 432

Query: 323 NHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +H+ LV++G R F+SM  + G+KP  +HYG VVDLLGRAG + EA   ++++ +  + V+
Sbjct: 433 SHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVI 492

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W+ LL +C ++ +VE+ E A +++V +  ++ GD++LLSN+YA+  +W +   +RK MK+
Sbjct: 493 WRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKD 552

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           R ++K PG S IE+ GV+ +FF  D  H + +EIY+K++E++ +IK  GY   T+ V  +
Sbjct: 553 RGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLE 612

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           + E EKE ++ +HSEKLA+AFGL+      +I++ KNLR+C DCH   KLISKVYNREI+
Sbjct: 613 VDEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIV 672

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRDR RFH FKDG CSC DYW
Sbjct: 673 VRDRNRFHHFKDGTCSCNDYW 693



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 192/371 (51%), Gaps = 12/371 (3%)

Query: 21  HIKQLQAHLTTTGQF--QSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAP--STNDF 76
           ++ QL A L  +G+     K F     ++E  A SP   L YA +LFR    P  ST  +
Sbjct: 31  YLPQLHAALIKSGELTGSPKCF---HSLLEAAAASP-TLLPYAVSLFRLGPRPPLSTPCY 86

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           N ++R L H+  P +A+  + +ML   S   D  T + ALK+C+R+  L     I ++ +
Sbjct: 87  NVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAV 146

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + G +AD  + ++L+ +YA   ++ +A+ +FD +    +  WNA+I    +     E V+
Sbjct: 147 KRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVE 206

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +FK M   GV   +E+T++  + ACG +G  K G  + EY+ E+ L  N  +  A+IDMY
Sbjct: 207 MFKGMLEVGVAF-DEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMY 265

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG L KA  +FD ++ R  +V W+ M+  +        AL LF +M  A V+P+DV+ 
Sbjct: 266 AKCGELGKARRLFDGMQSR-DVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTM 324

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           ++ L AC   G ++ G  + + +    +   +    ++VD   + G + +A +  +S+ +
Sbjct: 325 VSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPV 384

Query: 376 GTDMVLWQTLL 386
                 W  L+
Sbjct: 385 KNSWT-WTALI 394


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/614 (40%), Positives = 353/614 (57%), Gaps = 45/614 (7%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRS-KIIEFYALSPLNELAYAHALFR 66
           LQ  S     S   IKQ  AHL TTG     L P+ + K+++    S    L+YAH LF 
Sbjct: 17  LQLFSLESCKSMNQIKQTHAHLITTGLI---LHPITANKLLKVLIASSFGSLSYAHQLFD 73

Query: 67  QINAPSTNDFNAVLRGLAHSSKPT---NAVLWYRQMLRGS-HRSDALTCSFALKACARVL 122
           QI  P    +N +++  AH+  PT   N++  +  M+R S    +  T  F  KAC   L
Sbjct: 74  QIPKPDVFIYNTMIK--AHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGL 131

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAK--------------------------- 155
            + E  QI  H ++ G  ++  +   ++ +YA                            
Sbjct: 132 GVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIG 191

Query: 156 ----VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
                GEI  AK++FDEM  RD+ SW  +IAG  Q     EA+DLF  M   G   PNE 
Sbjct: 192 GYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGP-PPNEF 250

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF-DN 270
           T+  ALAAC +L A  +G  IH YI +  + MN  +  +++DMYAKCG +D A +VF D 
Sbjct: 251 TLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDE 310

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
              +  +  WN M+  +A+HG    A++LFEQM    V P+ V+++A L AC+H  LV++
Sbjct: 311 YGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEE 370

Query: 331 GVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           G   F SMA+  G++P ++HYG +VDLLGR+G L+EA + V ++ M  D  +W  LLGAC
Sbjct: 371 GRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGAC 430

Query: 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPG 449
           +++ D+E  +   + + E+ S++ G  VLL+NLY+A  +WD+   VR+ ++    KK PG
Sbjct: 431 RIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPG 490

Query: 450 FSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI-GEEEKE 508
            S IE+ GV H+F   D+SH + +++Y  LDE+  K+K  GY      VL DI  EE+KE
Sbjct: 491 CSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKE 550

Query: 509 NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
            AL  HSEKLA+AFGLI+T   T+I++ KNLR+C DCH+  K ISKVY REIIVRDR+R+
Sbjct: 551 TALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRY 610

Query: 569 HRFKDGACSCKDYW 582
           H FKDG CSCKDYW
Sbjct: 611 HHFKDGFCSCKDYW 624


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/610 (37%), Positives = 355/610 (58%), Gaps = 35/610 (5%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ALLQ CSS   +  IH   L+ HL +     S+L  +   + +     P N L YA+ +F
Sbjct: 17  ALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIF 76

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            QI  P+   FN ++R  +  ++P+ A  +Y QML+     D +T  F +KA   +  + 
Sbjct: 77  SQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVV 136

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL- 184
              Q HS ++R GF  D  +  +L+ +YA  G I +A ++F +M  RD+ SW +++AG  
Sbjct: 137 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYC 196

Query: 185 ------------------------------AQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
                                         A+ N   +A+DLF+ MK EGV   NE  ++
Sbjct: 197 KCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVA-NETVMV 255

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             +++C HLGA + G++ HEY+ +  + +N+++  A++DMY +CG ++KA  VF+ +  +
Sbjct: 256 SVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDK 315

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
            SL +W++++   AVHG   +A+  F QM R G  P D++  A L AC+H GLVD G+ +
Sbjct: 316 DSL-SWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEI 374

Query: 335 FNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + +M  + G++P ++HYG +VD+LGRAG+L EA + +  + +  +  +   LLGAC++Y 
Sbjct: 375 YENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYK 434

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           + E+AE     L+E+   + G +VLLSN+YA   +W+ +  +R  MK + VKK PG+S I
Sbjct: 435 NTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLI 494

Query: 454 EVGGVIHKF-FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALC 512
           E+ G I+KF    D+ H +  +I    +EI+ KI+  GY   T     D+ EEEKE A+ 
Sbjct: 495 EIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIH 554

Query: 513 YHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
            HSEKLA+A+G++ T   T+I++ KNLR+C DCH   KLIS+VY RE IVRDR RFH F+
Sbjct: 555 MHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFR 614

Query: 573 DGACSCKDYW 582
           +G CSC+DYW
Sbjct: 615 NGLCSCRDYW 624


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/591 (39%), Positives = 359/591 (60%), Gaps = 23/591 (3%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           L  L   C++   ++ IH   L+  L       +K     S          LN + YA +
Sbjct: 21  LTLLNSHCNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSN---------LNSIHYATS 71

Query: 64  -LFRQINAPSTND-------FNAVLRGLAHS-SKPTNAVLWYRQMLRGSHRSDALTCSFA 114
            LF   +  ST         FN ++R  + +    +N+ L+YR MLR     +  T  F 
Sbjct: 72  FLFPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFV 131

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE--IVSAKKVFDEMGVR 172
           LK CA + +L     +H  V++ GF  D  +  TL+ +Y  +GE     A+KVFD+    
Sbjct: 132 LKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKM 191

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D  +W+A+IAG  +   +S AVDLF+ M++ GV  P+E+T++  L+AC  LGA + G  +
Sbjct: 192 DTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVC-PDEITMVSVLSACADLGALELGKWV 250

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
             Y+ ++ +  +V +CNA+IDM+AKCG +DKA ++F  +  R ++V+W +++   A+HG 
Sbjct: 251 ESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSR-TIVSWTSVIAGLAMHGR 309

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYG 351
           G  A+ LF++M   G+ PDDV+++  L AC+H+GLVD G   F SM  N  + P ++HYG
Sbjct: 310 GLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYG 369

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +VDLL R G ++EA + V+ +    + ++W+T++ AC   G++++ E  S++L++    
Sbjct: 370 CMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPM 429

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           +  ++VLLSN+YA   +W+   +VR+ M  R +KKVPG + IEV   +++F   DKSH +
Sbjct: 430 HESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQ 489

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
           ++EIYE +DE+  +IK+ GY   TS VL DI EE+KE+AL  HSEKLA+AF L++T   T
Sbjct: 490 YKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGT 549

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           SI++ KNLR+C DCH   K ISKVYNREI+VRDR RFH FK+G CSC+D+W
Sbjct: 550 SIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/577 (38%), Positives = 346/577 (59%), Gaps = 8/577 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ++L  CSS  A+     +Q+Q H+   G        VR+ ++  YA      L  AH +F
Sbjct: 418 SILGACSSPSALKRG--QQIQDHIIEAGYGSDD--RVRTALLSMYA--KCGSLKDAHRVF 471

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            +I+  +   +NA++       +  NA+  ++ +L+   + ++ T +  L  C    +L 
Sbjct: 472 EKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLE 531

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
               +H  +++ G  +D  +   L+ ++   G+++SAK +F++M  RD+ SWN +IAG  
Sbjct: 532 LGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q      A D FK M+  G+ KP+++T  G L AC    A  EG ++H  I E   D +V
Sbjct: 592 QHGKNQVAFDYFKMMQESGI-KPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDV 650

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           +V   +I MY KCG ++ A +VF  +  +K++ +W +M+  +A HG G  ALELF QM +
Sbjct: 651 LVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMITGYAQHGRGKEALELFYQMQQ 709

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            GVKPD ++++ AL AC HAGL+++G+  F SM    ++P M+HYG +VDL GRAG L E
Sbjct: 710 EGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNE 769

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A + +  + +  D  +W  LLGACQ++ +VE+AE A++K +E+  N+ G FV+LSN+YAA
Sbjct: 770 AVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAA 829

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
              W +V ++RK M +R V K PG S+IEV G +H F++ DK+H +  EI+ +L+ +  +
Sbjct: 830 AGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHME 889

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           +++ GY   T  VLHD+ + EKE AL YHSE+LA+ +GL+ T   T I + KNLR+C DC
Sbjct: 890 MRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDC 949

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H   K ISK+  R+II RD  RFH FKDG CSC D+W
Sbjct: 950 HTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 178/328 (54%), Gaps = 3/328 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  +       +N +L G         A   + QM++ S + D  T    L ACA 
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              + +  ++++ +L+ G+  D  +GT L++++ K G+I  A KVFD +  RD+ +W ++
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSM 283

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I GLA+     +A +LF+RM+ EGV +P++V  +  L AC H  A ++G K+H  ++E  
Sbjct: 284 ITGLARHGRFKQACNLFQRMEEEGV-QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG 342

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
            D  + V  A++ MY KCG ++ A EVFD +K R ++V+W  M+  FA HG    A   F
Sbjct: 343 WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEAFLFF 401

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M  +G++P+ V++++ L AC+    +  G ++ + +   G   + +   +++ +  + 
Sbjct: 402 NKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKC 461

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           G L++A  + + +S   ++V W  ++ A
Sbjct: 462 GSLKDAHRVFEKIS-KQNVVAWNAMITA 488



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 179/337 (53%), Gaps = 3/337 (0%)

Query: 73  TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS 132
           T   NAVL  L+ + +   A+    ++     +    T S  L+ C +   L +  +I++
Sbjct: 75  TQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYN 134

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
           H+ + G   D  +  TL+++YAK G  +SAK++FD+M  +D+ SWN L+ G  Q  L  E
Sbjct: 135 HIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEE 194

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A  L ++M  + V KP++ T +  L AC       +G +++  I +   D ++ V  A+I
Sbjct: 195 AFKLHEQMVQDSV-KPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
           +M+ KCG +  A +VFDN+  R  LVTW +M+   A HG   +A  LF++M   GV+PD 
Sbjct: 254 NMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
           V++++ L ACNH   ++ G ++   M   G    +    +++ +  + G +++A ++   
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDL 372

Query: 373 VSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           V  G ++V W  ++     +G ++ A +   K++E G
Sbjct: 373 VK-GRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/528 (39%), Positives = 340/528 (64%), Gaps = 2/528 (0%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           N + YA ++FR I+ P T DFN ++RG  +      A+ +Y +M++  +  D  T    L
Sbjct: 80  NSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLL 139

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           KAC R+ ++ E  QIH  V + G  AD  +  +L+++Y + GE+  +  VF+++  +  A
Sbjct: 140 KACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAA 199

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           SW+++++  A   + SE + LF+ M  E   K  E  ++ AL AC + GA   G  IH +
Sbjct: 200 SWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGF 259

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           +     ++N++V  +++DMY KCG LDKA  +F  ++ R +L T++ M+   A+HG+G  
Sbjct: 260 LLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNL-TYSAMISGLALHGEGES 318

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVV 354
           AL +F +M + G++PD V Y++ L AC+H+GLV +G R+F  M   G V+P  +HYG +V
Sbjct: 319 ALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLV 378

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLLGRAG L+EA + ++S+ +  + V+W+T L  C++  ++E+ +IA+++L+++ S+N G
Sbjct: 379 DLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPG 438

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
           D++L+SNLY+  + WDDV R R  +  + +K+ PGFS +E+ G  H+F + D+SH K +E
Sbjct: 439 DYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKE 498

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY+ L ++ +++K  GY+   + +L ++ EEEK+  L  HS+K+A+AFGL+ T   + I+
Sbjct: 499 IYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIK 558

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +NLR+C DCH   K IS +Y REI+VRDR RFH FK G CSCKDYW
Sbjct: 559 IARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/602 (40%), Positives = 349/602 (57%), Gaps = 47/602 (7%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEF-YALSPLNELAYAHALFRQINAPSTNDFNAV 79
           H+K + A L   G  +     + +K++ F +     N   Y+H +F Q   P+   FN +
Sbjct: 25  HLKHVHAALLRLGLDEDSY--LLNKVLRFSFNFGNTN---YSHRIFHQTKEPNIFLFNTM 79

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           + GL  +     ++  Y  M +     D+ T  F LKACAR+L     +++H  V++ G 
Sbjct: 80  IHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGC 139

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEM----------------GV------------ 171
            +DA + T+L+ +Y K G I +A KVFD++                GV            
Sbjct: 140 ESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRR 199

Query: 172 ----------RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
                     +DI SW+++I G A   L  EA+DLF +M  EG F+P+   ++G L AC 
Sbjct: 200 ACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEG-FRPDCYAMVGVLCACA 258

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            LGA + G+     +       N V+  A+IDMYAKCG +D A+EVF  ++ +K +V WN
Sbjct: 259 RLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMR-KKDIVVWN 317

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
             +   A+ G    A  LF QM ++G++PD  +++  LCAC HAGLVD+G + FNSM   
Sbjct: 318 AAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERV 377

Query: 342 -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + P ++HYG +VDLLGRAG L EA  +VKS+ M  + ++W  LLG C+L+ D ++ E 
Sbjct: 378 FTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEG 437

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
             ++L+ +  +N G++VLLSN+Y+A  +W+D  ++R  M  R +KKVPG+S+IEV GV+H
Sbjct: 438 VLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVH 497

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
           +F   D SH    +IY KL E++  +K  GY   T  VL DI EEEKE+ +  HSEKLA+
Sbjct: 498 EFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAI 557

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AFGLIST+    I+V KNLR+C DCH+ IK IS+   REIIVRD  RFH F DG+CSCKD
Sbjct: 558 AFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKD 617

Query: 581 YW 582
           YW
Sbjct: 618 YW 619


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/594 (39%), Positives = 350/594 (58%), Gaps = 42/594 (7%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           H+ Q+ A L   G + + +     K+   YA   L  L  +  +F   + P+   F+A++
Sbjct: 62  HLLQIHASLLRRGLYHNPILNF--KLQRSYA--ALGRLDCSVFVFNTFDEPNVFSFSAII 117

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
                S     A  +Y QML      +A T S  LK+C+    L     +H   ++ G  
Sbjct: 118 HSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLG 173

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR---------------------------- 172
           +D  + T L+DVYA+ G++V A+++FD+M  R                            
Sbjct: 174 SDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGM 233

Query: 173 ---DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
              D+  WN +I G AQ  + +E++ LF+RM +     PNEVTVL  L+ACG LGA + G
Sbjct: 234 KERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAI-PNEVTVLAVLSACGQLGALESG 292

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
             IH YI  + + +NV V  A+IDMY+KCG L+ A  VFD I+  K +V WN+M++ +A+
Sbjct: 293 RWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIR-DKDVVAWNSMIVGYAM 351

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMK 348
           HG    AL+LFE+M   G KP D++++  L AC H GLV++G   F  M +  G++P ++
Sbjct: 352 HGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIE 411

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
           HYG +V+LLGRAG L+EA  +VK++++  D VLW TLLG C+L+ ++++ E  ++ LV+ 
Sbjct: 412 HYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQ 471

Query: 409 GSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKS 468
              N G +VLLSN+YAA   W+ V ++R  MK   ++K  G S IEV   +H+F   ++ 
Sbjct: 472 KLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERK 531

Query: 469 HVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTS 528
           H K +EIY  L+EI   +K  GY   T  VLHD+ EE+KE +L  HSEKLA+AFGLIST 
Sbjct: 532 HPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTK 591

Query: 529 EATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             T++++ KNLR+C DCH V+K+IS++  R+I++RDR RFH F+DG CSC DYW
Sbjct: 592 PGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/577 (38%), Positives = 346/577 (59%), Gaps = 8/577 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ++L  CSS  A+     +Q+Q H+   G        VR+ ++  YA      L  AH +F
Sbjct: 418 SILGACSSPSALKRG--QQIQDHIIEAGYGSDD--RVRTALLSMYA--KCGSLKDAHRVF 471

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            +I+  +   +NA++       +  NA+  ++ +L+   + ++ T +  L  C    +L 
Sbjct: 472 EKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLE 531

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
               +H  +++ G  +D  +   L+ ++   G+++SAK +F++M  RD+ SWN +IAG  
Sbjct: 532 LGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q      A D FK M+  G+ KP+++T  G L AC    A  EG ++H  I E   D +V
Sbjct: 592 QHGKNQVAFDYFKMMQESGI-KPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDV 650

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           +V   +I MY KCG ++ A +VF  +  +K++ +W +M+  +A HG G  ALELF QM +
Sbjct: 651 LVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQHGRGKEALELFYQMQQ 709

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            GVKPD ++++ AL AC HAGL+++G+  F SM    ++P M+HYG +VDL GRAG L E
Sbjct: 710 EGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNE 769

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A + +  + +  D  +W  LLGACQ++ +VE+AE A++K +E+  N+ G FV+LSN+YAA
Sbjct: 770 AVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAA 829

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
              W +V ++RK M +R V K PG S+IEV G +H F++ DK+H +  EI+ +L+ +  +
Sbjct: 830 AGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHME 889

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           +++ GY   T  VLHD+ + EKE AL YHSE+LA+ +GL+ T   T I + KNLR+C DC
Sbjct: 890 MRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDC 949

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H   K ISK+  R+II RD  RFH FKDG CSC D+W
Sbjct: 950 HTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 195/366 (53%), Gaps = 7/366 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +++  H+  +G  Q  +F +R+ +I  YA         A  +F  +       +N +L G
Sbjct: 130 ERIYNHIKKSG-VQPDIF-MRNTLINMYA--KCGNTISAKQIFDDMREKDVYSWNLLLGG 185

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
                    A   + QM++ S + D  T    L ACA    + +  ++++ +L+ G+  D
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +GT L++++ K G+I  A KVFD +  RD+ +W ++I GLA+     +A +LF+RM+ 
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           EGV +P++V  +  L AC H  A ++G K+H  ++E   D  + V  A++ MY KCG ++
Sbjct: 306 EGV-QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSME 364

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A EVFD +K R ++V+W  M+  FA HG    A   F +M  +G++P+ V++++ L AC
Sbjct: 365 DALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGAC 423

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           +    +  G ++ + +   G   + +   +++ +  + G L++A  + + +S   ++V W
Sbjct: 424 SSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAW 482

Query: 383 QTLLGA 388
             ++ A
Sbjct: 483 NAMITA 488



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 179/337 (53%), Gaps = 3/337 (0%)

Query: 73  TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS 132
           T   NAVL  L+ + +   A+    ++     +    T S  L+ C +   L +  +I++
Sbjct: 75  TQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYN 134

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
           H+ + G   D  +  TL+++YAK G  +SAK++FD+M  +D+ SWN L+ G  Q  L  E
Sbjct: 135 HIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEE 194

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A  L ++M  + V KP++ T +  L AC       +G +++  I +   D ++ V  A+I
Sbjct: 195 AFKLHEQMVQDSV-KPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
           +M+ KCG +  A +VFDN+  R  LVTW +M+   A HG   +A  LF++M   GV+PD 
Sbjct: 254 NMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
           V++++ L ACNH   ++ G ++   M   G    +    +++ +  + G +++A ++   
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDL 372

Query: 373 VSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           V  G ++V W  ++     +G ++ A +   K++E G
Sbjct: 373 VK-GRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/560 (41%), Positives = 355/560 (63%), Gaps = 18/560 (3%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F+S LF V S +I+ Y  S   +L+ A  LF +I   +   + +++ G   +     A++
Sbjct: 113 FESDLF-VSSALIDMY--SKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALM 169

Query: 95  WYRQMLRGSHRS---------DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
            +++ L               D++     L AC+RV     +  +H   ++ G   D ++
Sbjct: 170 VFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGL--DKVM 227

Query: 146 G--TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
           G   TLLD YAK GE+  ++KVFD+M  +D+ SWN++IA  AQ  L+++A ++F  M   
Sbjct: 228 GVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKA 287

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           G  K NEVT+   L AC H GA + G  +H+ + +     NV++  ++IDMY KCG  + 
Sbjct: 288 GGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEM 347

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A   FD +K  K++ +W  M+  + +HG    AL++F QM  AGVKP+ +++++ L AC+
Sbjct: 348 ARNAFDGMK-EKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACS 406

Query: 324 HAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           HAG +++G R FN+M++   V+P ++HYG +VDLLGRAG ++EA +++KS+ +  D VLW
Sbjct: 407 HAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLW 466

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
            +LL AC+++ DVE+AEI++R+L ++  +NCG +VLL+N+YA   RW DV R+R  +K+R
Sbjct: 467 GSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDR 526

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            + K PG+S +E+ G +H F   DK H +  +IY+ L+E+  K++E GY    + VLHD+
Sbjct: 527 GLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDV 586

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            EEEKE  +  HSEKLAVAFG++++   ++I V KNLR+C DCH VIKLISK+ +REIIV
Sbjct: 587 DEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIV 646

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFH FKDG CSC DYW
Sbjct: 647 RDAKRFHHFKDGLCSCGDYW 666



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 13/311 (4%)

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F + +  S N   A L     S +   A  W R++    +RS   T   A+K+C+ +  L
Sbjct: 42  FDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRS---TFPCAIKSCSALFDL 98

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               Q H   L  GF +D  + + L+D+Y+K G++ +A+ +FDE+  R+I +W +LI G 
Sbjct: 99  NSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGY 158

Query: 185 AQGNLASEAVDLFKRM---KMEGVFKP-----NEVTVLGALAACGHLGAWKEGDKIHEYI 236
            Q + A EA+ +FK     K EG  +      + V ++  L+AC  +      + +H   
Sbjct: 159 VQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVA 218

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +  LD  + V N ++D YAKCG +  + +VFD++   K +V+WN+M+  +A +G    A
Sbjct: 219 IKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDM-AEKDVVSWNSMIAVYAQNGLSTDA 277

Query: 297 LELFEQMGRA-GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
            E+F  M +A G K ++V+    L AC H G +  G+ L + +   G   N+    S++D
Sbjct: 278 FEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIID 337

Query: 356 LLGRAGRLQEA 366
           +  + G+ + A
Sbjct: 338 MYCKCGQAEMA 348



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +F+    R  + +WN+++   A  GD   +L  F  M +  +KP+  ++  A+ +C+   
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            ++ G +        G + ++    +++D+  + G+L  A  +   +    ++V W +L+
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPR-RNIVTWTSLI 155


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/592 (38%), Positives = 354/592 (59%), Gaps = 38/592 (6%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           ++L  H+   G F S +F V++ +I  Y+LS   E++ A  +F + +      +N ++ G
Sbjct: 139 RELHDHIVKLG-FSSNVF-VQNALIHLYSLS--GEVSVARGVFDRSSKGDVVTWNVMISG 194

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              S +   ++  + +M R      ++T    L AC+++  L    ++H +V        
Sbjct: 195 YNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPV 254

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA----------------- 185
            +L   L+D+YA  G++ +A  +FD M  RD+ SW A++ G                   
Sbjct: 255 RVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPE 314

Query: 186 --------------QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
                         Q N   E + LF+ M+   + KP+E T++  L AC HLGA + G+ 
Sbjct: 315 RDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANI-KPDEFTMVSILTACAHLGALELGEW 373

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           I  YI +  + ++  V NA+IDMY  CG ++KA  +F+ +  R   ++W  ++   A++G
Sbjct: 374 IKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDK-ISWTAVIFGLAING 432

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHY 350
            G  AL++F QM +A + PD+V+ +  LCAC H+G+VD G + F  M    G++PN+ HY
Sbjct: 433 YGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHY 492

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
           G +VDLLGRAG L+EA +++K++ +  + ++W +LLGAC+++ D EMAE+A+++++E+  
Sbjct: 493 GCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEP 552

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
            N   +VLL N+YAA  RW+ +  VRK M +R +KK PG S IE+ G +H+F   D+ H 
Sbjct: 553 ENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHP 612

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           + +EIY KLDE+   +K  GY+  TS V  DIGEEEKE+A+  HSEKLA+AFGLIS+   
Sbjct: 613 QSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPG 672

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +I++ KNLR+C DCH V KL+SKVYNRE+IVRDR RFH F+ G+CSCKDYW
Sbjct: 673 VTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 200/424 (47%), Gaps = 41/424 (9%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L++ C S        +KQ+ +    TG   + + P  ++II F     L ++ YA  +F
Sbjct: 24  SLIKTCKSMA-----QLKQIHSQTICTGLISNPIVP--AQIIAFCCKHELGDMEYARMVF 76

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             +  P+   +N +++G +    P +AV  Y +ML      D  T  F LK   R  A+ 
Sbjct: 77  DTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVK 136

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              ++H H+++ GF ++  +   L+ +Y+  GE+  A+ VFD     D+ +WN +I+G  
Sbjct: 137 CGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYN 196

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           +     E++ LF  M+   V  P+ +T++  L+AC  L     G ++H Y+++ +++   
Sbjct: 197 RSKQFDESMKLFDEMERMRVL-PSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVR 255

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG-------------- 291
           V+ NA+IDMYA CG +D A  +FDN+K R  +++W  +V  F   G              
Sbjct: 256 VLENALIDMYAACGDMDTALGIFDNMKSR-DVISWTAIVTGFTNLGQVGLARNYFDKMPE 314

Query: 292 ----------DG-------PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
                     DG          L LF +M  A +KPD+ + ++ L AC H G ++ G  +
Sbjct: 315 RDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWI 374

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
              +    +K +     +++D+    G +++A  I  ++    D + W  ++    + G 
Sbjct: 375 KAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMP-HRDKISWTAVIFGLAINGY 433

Query: 395 VEMA 398
            E A
Sbjct: 434 GEEA 437



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 150/323 (46%), Gaps = 14/323 (4%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAK--VGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
           QIHS  +  G +++ ++   ++    K  +G++  A+ VFD M   +   WN +I G ++
Sbjct: 37  QIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSR 96

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
               + AV ++  M   GV  P+E T    L       A K G ++H++I +     NV 
Sbjct: 97  VGCPNSAVSMYCEMLERGVM-PDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVF 155

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V NA+I +Y+  G +  A  VFD    +  +VTWN M+  +        +++LF++M R 
Sbjct: 156 VQNALIHLYSLSGEVSVARGVFDR-SSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERM 214

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            V P  ++ ++ L AC+    ++ G R+   + +  ++P      +++D+    G +  A
Sbjct: 215 RVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTA 274

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426
             I  ++    D++ W  ++      G V +A     K+ E       DFV  + +   Y
Sbjct: 275 LGIFDNMK-SRDVISWTAIVTGFTNLGQVGLARNYFDKMPER------DFVSWTAMIDGY 327

Query: 427 ---ERWDDVGRVRKAMKNRDVKK 446
               R+ +V  + + M+  ++K 
Sbjct: 328 LQVNRFKEVLSLFREMQAANIKP 350


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/467 (46%), Positives = 312/467 (66%), Gaps = 3/467 (0%)

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           +C  V A+    ++H+++LR+GF     L T L+D+Y K GEI SA+ +FD M  +D+ +
Sbjct: 241 SCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMT 300

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W A+I+  AQ N    A  LF +M+  GV +PNE+T++  L+ C   GA   G   H YI
Sbjct: 301 WTAMISAYAQANCIDYAFQLFVQMRDNGV-RPNELTMVSLLSLCAVNGALDMGKWFHAYI 359

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            ++ ++++V++  A+IDMYAKCG +  A  +F      + + TWN M+  + +HG G +A
Sbjct: 360 DKQGVEVDVILKTALIDMYAKCGDISGAQRLFSE-AIDRDICTWNVMMAGYGMHGYGEKA 418

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVD 355
           L+LF +M   GVKP+D++++ AL AC+HAGLV +G  LF  M  + G+ P ++HYG +VD
Sbjct: 419 LKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVD 478

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LLGRAG L EA  +++S+ +  ++ +W  +L AC+++ +  M E+A+R+L+ +   NCG 
Sbjct: 479 LLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGY 538

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
            VL+SN+YAA  RW+DV  +RKA+K+  +KK PG S IEV G++H F   D +H    +I
Sbjct: 539 KVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKI 598

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
            E L E+  K+KE GY   TS VLH+I EEEKE AL YHSEKLA+AFGLIST+  T I+V
Sbjct: 599 SEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLISTAPGTPIRV 658

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLRIC DCH V KL+SK+Y R IIVRDR RFH F++G+CSC  YW
Sbjct: 659 VKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 167/334 (50%), Gaps = 25/334 (7%)

Query: 87  SKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLG 146
           S P  A+  Y  M +     D+      LKAC+++       +IH   +++G ++D  + 
Sbjct: 88  SHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVV 147

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRD----------------------IASWNALIAGL 184
             L+ +Y++ G +VSA+ +FD+M  RD                      I SW A+IAG 
Sbjct: 148 NALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGY 207

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
            + N   E   LF RM  E VF PN++T+L  + +CG +GA + G ++H YI      M+
Sbjct: 208 IRCNDLEEGERLFVRMIEENVF-PNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMS 266

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + +  A++DMY KCG +  A  +FD++K  K ++TW  M+ A+A       A +LF QM 
Sbjct: 267 LALATALVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMISAYAQANCIDYAFQLFVQMR 325

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
             GV+P++++ ++ L  C   G +D G      +   GV+ ++    +++D+  + G + 
Sbjct: 326 DNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDIS 385

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            A  +  S ++  D+  W  ++    ++G  E A
Sbjct: 386 GAQRLF-SEAIDRDICTWNVMMAGYGMHGYGEKA 418



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 140/286 (48%), Gaps = 8/286 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L+  C   GAV     K+L A++   G   S    + + +++ Y      E+  A A+F
Sbjct: 237 SLIISCGFVGAVQLG--KRLHAYILRNGFGMS--LALATALVDMYG--KCGEIRSARAIF 290

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             +       + A++   A ++    A   + QM     R + LT    L  CA   AL 
Sbjct: 291 DSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALD 350

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
                H+++ + G   D +L T L+D+YAK G+I  A+++F E   RDI +WN ++AG  
Sbjct: 351 MGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYG 410

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE-YIREERLDMN 244
                 +A+ LF  M+  GV KPN++T +GAL AC H G   EG  + E  I +  L   
Sbjct: 411 MHGYGEKALKLFTEMETLGV-KPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPK 469

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           V     ++D+  + GLLD+A+++ +++    ++  W  M+ A  +H
Sbjct: 470 VEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIH 515


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/577 (40%), Positives = 362/577 (62%), Gaps = 27/577 (4%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LLQ+CS+   +  IH + L+     TG    ++ P  SK++ F A      LAYA  +F 
Sbjct: 24  LLQRCSNMEELRQIHGQMLK-----TGLILDEI-PA-SKLLAFCASPNSGSLAYARTVFD 76

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           +I  P+T  +N ++RG ++S +P  A+L Y  ML  S   +A T  F LKAC+ + AL E
Sbjct: 77  RIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEE 136

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
           T QIH+H+++ GF ++     +LL+VY+K G+I SA+ +FD++  RD             
Sbjct: 137 TQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD------------- 183

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
               +EA++LF RM+  G+ K + V ++  L AC  LG   +G  IH YI++  ++++ +
Sbjct: 184 ----TEALNLFHRMQTAGI-KLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPI 238

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           +   +IDMYAKCG L++A EVF  ++  K +  W  M+  +A+HG G  ALE F +M  A
Sbjct: 239 LGCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHGRGREALEWFMKMQTA 297

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQE 365
           GV+P+ +++   L AC+HAGLV +   LF SM    G KP+++HYG +VDLLGRAG L+E
Sbjct: 298 GVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKE 357

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A ++++++ +  +  +W  LL AC ++G++E+ +   + L+++   + G ++ L++++AA
Sbjct: 358 AEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAA 417

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
              W+   RVR+ MK + V K+PG S I V G  H+F   D+SH + +EI   L++I+ +
Sbjct: 418 AGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVER 477

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           ++E GY      +L D+ ++EKE A+ +HSEKLAV FGLIST    +I++ KNLR+C DC
Sbjct: 478 LREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDC 537

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H VIKLISKVY REI++RDR RFH FKDG C+C DYW
Sbjct: 538 HTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/593 (40%), Positives = 339/593 (57%), Gaps = 38/593 (6%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           Q+ AH+   G   + L  V SK++ FYA S   ++  + ++F  I  PS+  FN+++R  
Sbjct: 91  QVHAHMLLRGLQPTAL--VGSKMVAFYASS--GDIDSSVSVFNGIGEPSSLLFNSMIRAY 146

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
           A        V  Y  M       D  T  F LK+   +L+++    +H  +LR G   D 
Sbjct: 147 ARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDL 206

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL------------------- 184
            + T+L+ +Y K GEI  A KVFD M +RD++SWNAL+AG                    
Sbjct: 207 YVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWR 266

Query: 185 ------------AQGNLASEAVDLFKRM-KMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
                       +Q  LA +A+ LF  M K +   +PN VT++  L AC  L   + G +
Sbjct: 267 NIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQ 326

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMAFAVH 290
           IHE      L+ N  V  A+  MYAKCG L  A   FD + +  K+L+ WNTM+ A+A +
Sbjct: 327 IHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASY 386

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKH 349
           G G +A+  F +M +AG++PDD+++   L  C+H+GLVD G++ FN M+    + P ++H
Sbjct: 387 GHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEH 446

Query: 350 YGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           Y  V DLLGRAGRL EA  +V  + M     +W +LL AC+ + ++EMAE A+RKL  + 
Sbjct: 447 YACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLE 506

Query: 410 SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
             N G++VLLSN+YA   RW +V ++R  +K++  KK PG S+IE+ G  H F   D SH
Sbjct: 507 PENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSH 566

Query: 470 VKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSE 529
            + +EIY  L+ +  K+K  GY   TS VLHDI EEEKE  L  HSEKLAVAFG+++T  
Sbjct: 567 PQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPA 626

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            T ++V KNLRIC DCH  +  IS++Y RE+IVRD  RFH FK G CSC DYW
Sbjct: 627 ETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 2/176 (1%)

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           L   K G ++H ++    L    +V + ++  YA  G +D +  VF+ I    SL+ +N+
Sbjct: 83  LNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLL-FNS 141

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           M+ A+A +G   R +  +  M   G   D  ++   L +      V  G  +   +   G
Sbjct: 142 MIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIG 201

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           ++ ++    S++ L G+ G + +A  +  ++++  D+  W  LL      G ++ A
Sbjct: 202 LQFDLYVATSLIILYGKCGEINDAGKVFDNMTI-RDVSSWNALLAGYTKSGCIDAA 256


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/581 (39%), Positives = 356/581 (61%), Gaps = 14/581 (2%)

Query: 6   ALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           ++L  C+  G +S    IH+  ++  L      + +LF V + +I  YA      L  A 
Sbjct: 278 SILPVCAQLGDISTATLIHLYVIKHGL------EFELF-VSNALINMYA--KFGNLGDAQ 328

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F+Q+       +N+++     +  P  A  ++ +M       D LT        A+  
Sbjct: 329 KVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSR 388

Query: 123 ALFETLQIHSHVLRHGFLADAL-LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
               +  +H  ++R G+L +A+ +G  ++D+YAK+G I SA KVF+ + V+D+ SWN LI
Sbjct: 389 DYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLI 448

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           +G  Q  LASEA+++++ M+     K N+ T +  LAA  H+GA ++G +IH ++ +  L
Sbjct: 449 SGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNL 508

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
            ++V V   +ID+Y KCG L  A  +F  +  R+S V WN ++    +HG G +AL+LF 
Sbjct: 509 HLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWNAIISCHGIHGHGEKALKLFR 567

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           +M   GVKPD V++++ L AC+H+GLVD+G   F+ M   G+KP++KHYG +VDLLGRAG
Sbjct: 568 EMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAG 627

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L+ A D +K + +  D  +W  LLGAC+++G++E+ + AS +L E+ S N G +VLLSN
Sbjct: 628 FLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSN 687

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YA   +W+ V +VR   + R +KK PG+S IEV   +  F+T ++SH K +EIY +L  
Sbjct: 688 IYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRI 747

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           +  K+K  GY    S VL D+ E+EKE+ L  HSE+LA+AFG+IST   ++I++FKNLR+
Sbjct: 748 LTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRV 807

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH+  K IS++  REI+VRD  RFH FK+G CSC DYW
Sbjct: 808 CGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 192/389 (49%), Gaps = 19/389 (4%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           + N+L   C+       +  K+L A L  +G+ QS    +R  ++  YA   L +++ + 
Sbjct: 78  DFNSLFDSCTKT-----LLAKRLHALLVVSGKIQSNFISIR--LVNLYA--SLGDVSLSR 128

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKACARV 121
             F QI       +N+++     +     A+  +Y+ +L    ++D  T    LKAC   
Sbjct: 129 GTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQ-- 186

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
             L +  +IH  V + GF  D  +  +L+ +Y++ G +  A+ +FD+M  RD+ SWNA+I
Sbjct: 187 -TLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMI 245

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           +GL Q   A++A+D+   M++EG+   + VTV   L  C  LG       IH Y+ +  L
Sbjct: 246 SGLIQNGNAAQALDVLDEMRLEGI-NMDSVTVASILPVCAQLGDISTATLIHLYVIKHGL 304

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           +  + V NA+I+MYAK G L  A +VF  +  R  +V+WN+++ A+  + D   A   F 
Sbjct: 305 EFELFVSNALINMYAKFGNLGDAQKVFQQMFLR-DVVSWNSIIAAYEQNDDPVTARGFFF 363

Query: 302 QMGRAGVKPDDVSY--LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           +M   G++PD ++   LA++ A +        V  F  M    +   +    +V+D+  +
Sbjct: 364 KMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGF-IMRRGWLMEAVVIGNAVMDMYAK 422

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            G +  A  +   + +  D+V W TL+  
Sbjct: 423 LGVIDSAHKVFNLIPV-KDVVSWNTLISG 450



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 190/377 (50%), Gaps = 8/377 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           FQ  +F V + +I  Y  S    +  A +LF  +       +NA++ GL  +     A+ 
Sbjct: 203 FQWDVF-VAASLIHMY--SRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 259

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
              +M       D++T +  L  CA++  +     IH +V++HG   +  +   L+++YA
Sbjct: 260 VLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYA 319

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G +  A+KVF +M +RD+ SWN++IA   Q +    A   F +M++ G+ +P+ +T++
Sbjct: 320 KFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGL-EPDLLTLV 378

Query: 215 GALAACGHLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
              +       +K    +H +I R   L   VV+ NAV+DMYAK G++D A +VF+ I  
Sbjct: 379 SLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPV 438

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDDVSYLAALCACNHAGLVDDGV 332
            K +V+WNT++  +  +G    A+E++  M     +K +  ++++ L A  H G +  G+
Sbjct: 439 -KDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGM 497

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
           R+   +    +  ++     ++DL G+ GRL +A  +   V   +  V W  ++    ++
Sbjct: 498 RIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESS-VPWNAIISCHGIH 556

Query: 393 GDVEMAEIASRKLVEMG 409
           G  E A    R++ + G
Sbjct: 557 GHGEKALKLFREMQDEG 573


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/529 (43%), Positives = 345/529 (65%), Gaps = 7/529 (1%)

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPT---NAVLWYRQMLR-GSHRSDALTCSFA 114
           +YA  LF QI  P+   +N+++R L+ ++      + VL YR+MLR GS   ++ T +FA
Sbjct: 78  SYARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFA 137

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM-GVRD 173
           LKAC+ V AL E  Q+HS   R G      + T LL++YAK  E+  A+ VFD M G ++
Sbjct: 138 LKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKN 197

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           +A+W+A+I G ++  + +EA+ LF+ M+   V  P+EVT++  ++AC   GA   G  +H
Sbjct: 198 LAAWSAMIGGYSRVGMVNEALGLFREMQAADV-NPDEVTMVSVISACAKAGALDLGRWVH 256

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            +I  + + +++ +  A+IDMYAKCGL+++A  VFD +  R +   W+ M++  A+HG  
Sbjct: 257 AFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDT-KAWSAMIVGLAIHGLV 315

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             AL+LF +M    V+P++V+++  L AC H+GLV++G R +++M   G+KP+M++YG +
Sbjct: 316 EVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCM 375

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VDL  R+  L EA   V  +++  + V+W+TLL A +     ++ + AS+KL+E+   N 
Sbjct: 376 VDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNP 435

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
            ++VLLSNLYA+  +WD V  +RK MK  +V  V G S IE+ G +HKF  SD SH + +
Sbjct: 436 ENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIK 495

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           EI   L EI  ++   G+   T+ VLHD+GEEEKE ALC HSE+LA+A+GL+ T     I
Sbjct: 496 EIRLLLREIADRVVRAGHKPWTAAVLHDVGEEEKEVALCEHSERLAIAYGLLKTKAPHVI 555

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +V KNLR C DCH+V K++SK Y+REIIVRDRVRFHRF +G+CSCKD+W
Sbjct: 556 RVVKNLRFCPDCHEVAKIVSKSYDREIIVRDRVRFHRFVEGSCSCKDFW 604


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/555 (38%), Positives = 339/555 (61%), Gaps = 34/555 (6%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           YA  +F QI  P+   FNA++RG + S  P  A  +Y Q  R     D LT  F +K+C 
Sbjct: 71  YASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCT 130

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA------------------------- 154
           ++  +    Q H H+++HGF  D  +  +L+ +YA                         
Sbjct: 131 KLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTS 190

Query: 155 ------KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
                 K G++ SA+K+FD+M  +++ +W+ +I+G AQ N   +AV+LFK ++ +GV + 
Sbjct: 191 MIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGV-RA 249

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           NE  ++  +++C HLGA + G++ H+Y+ +  + +N+++  A++DMYA+CG +DKA  VF
Sbjct: 250 NETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVF 309

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
           +++  R +L +W  ++   A+HG   R+L+ F  M  AG+ P D+++ A L AC+H GLV
Sbjct: 310 EDLPERDTL-SWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLV 368

Query: 329 DDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           + G ++F SM  +  V+P ++HYG +VDLLGRAG+L+EA   V  + +  +  +W  LLG
Sbjct: 369 ERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLG 428

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           AC+++ + E+ E   + L+++   + G +VLLSN+YA  + W+ V  +R+ MK + +KK 
Sbjct: 429 ACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKP 488

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
           PG S IE+ G +HKF   D SH +  +I    +EI+ +I+  GY   T+  L DI EEEK
Sbjct: 489 PGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEK 548

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           E+AL  HSEKLA+AFG++ +   T I++ KNLR+C DCH   KLISKV+ RE+IVRDR R
Sbjct: 549 ESALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNR 608

Query: 568 FHRFKDGACSCKDYW 582
           FH F+ G CSC DYW
Sbjct: 609 FHHFRQGLCSCMDYW 623


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/610 (37%), Positives = 359/610 (58%), Gaps = 37/610 (6%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ALLQ CSS   +  IH   L+ HL +     S+L  +      F    P N L YA+ +F
Sbjct: 17  ALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFN--KPTNLLGYAYGIF 74

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            QI  P+   FN ++R  +  ++P+ A  +Y QML+     D +T  F +KA + +  + 
Sbjct: 75  SQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVL 134

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL- 184
              Q HS ++R GF  D  +  +L+ +YA  G I +A ++F +MG RD+ SW +++AG  
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194

Query: 185 ------------------------------AQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
                                         A+ N   +A+DLF+ MK EGV   NE  ++
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV-ANETVMV 253

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             +++C HLGA + G++ +EY+ +  + +N+++  A++DM+ +CG ++KA  VF+ +   
Sbjct: 254 SVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPET 313

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
            SL +W++++   AVHG   +A+  F QM   G  P DV++ A L AC+H GLV+ G+ +
Sbjct: 314 DSL-SWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEI 372

Query: 335 FNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + +M  + G++P ++HYG +VD+LGRAG+L EA + +  + +  +  +   LLGAC++Y 
Sbjct: 373 YENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYK 432

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           + E+AE     L+++   + G +VLLSN+YA   +WD +  +R  MK + VKK PG+S I
Sbjct: 433 NTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLI 492

Query: 454 EVGGVIHKF-FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALC 512
           E+ G I+KF    D+ H +  +I  K +EI+ KI+  GY   T     D+ EEEKE+++ 
Sbjct: 493 EIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIH 552

Query: 513 YHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
            HSEKLA+A+G++ T   T+I++ KNLR+C DCH V KLIS+VY RE+IVRDR RFH F+
Sbjct: 553 MHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFR 612

Query: 573 DGACSCKDYW 582
           +G CSC+DYW
Sbjct: 613 NGVCSCRDYW 622


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/600 (39%), Positives = 354/600 (59%), Gaps = 47/600 (7%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           H+ Q+ A L   G     +  +  K+   YA   L  L ++  LF +   P+   +  ++
Sbjct: 38  HLLQIHAALLRRGLHHHPI--LNFKLQRSYA--SLGHLHHSVTLFHRTPNPNVFLWTHII 93

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
              AH     +A+ +Y QML    + +A T S  LKAC     L     +HSH ++ G  
Sbjct: 94  NAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFGLS 149

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEM------------------------------- 169
           +   + T L+D YA+ G++ SA+K+FD M                               
Sbjct: 150 SHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGM 209

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV------FKPNEVTVLGALAACGHL 223
           G++D+  WN +I G AQ    +EA+  F++M M          +PNE+TV+  L++CG +
Sbjct: 210 GMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQV 269

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
           GA + G  +H Y+    + +NV V  A++DMY KCG L+ A +VFD ++  K +V WN+M
Sbjct: 270 GALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVME-GKDVVAWNSM 328

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CG 342
           +M + +HG    AL+LF +M   GVKP D++++A L AC HAGLV  G  +F+SM +  G
Sbjct: 329 IMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYG 388

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           ++P ++HYG +V+LLGRAGR+QEA D+V+S+ +  D VLW TLL AC+++ +V + E  +
Sbjct: 389 MEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIA 448

Query: 403 RKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKF 462
             LV  G  + G +VLLSN+YAA   W  V +VR  MK   V+K PG S IEV   +H+F
Sbjct: 449 EILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEF 508

Query: 463 FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
              D+ H + ++IY  L+++   +KE  Y   T  VLHDIGE+EKE +L  HSEKLA+AF
Sbjct: 509 VAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAF 568

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           GLISTS   +I++ KNLR+C DCH V+K++SK+  R+II+RDR RFH F++G+CSC+DYW
Sbjct: 569 GLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/529 (41%), Positives = 336/529 (63%), Gaps = 9/529 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F +I       +NA++ G   + +   A+  +++M+R + R D  T    + ACA+
Sbjct: 149 ARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQ 208

Query: 121 VLALFETLQIHSHVLR----HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
             ++    Q+HS V      HGF +   +   L+D+Y+K G++ +A  +F+ +  +D+ S
Sbjct: 209 SGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVS 268

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN LI G    NL  EA+ LF+ M   G   PN+VT+L  L AC HLGA   G  IH YI
Sbjct: 269 WNTLIGGYTHTNLYKEALLLFQEMLRSGEC-PNDVTLLSVLPACAHLGAIDIGRWIHVYI 327

Query: 237 --REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
             + + +     +  ++IDMYAKCG ++ A +VF+++  R SL +WN M+  FA+HG   
Sbjct: 328 DKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYR-SLSSWNAMIFGFAMHGRAN 386

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSV 353
            A +LF +M    V+PDD++++  L AC+H+GL+D G ++F SM  +  + P ++HYG +
Sbjct: 387 AAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCM 446

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           +DLLG +G  +EA +++ ++ M  D V+W +LL AC+ +G++E+AE  ++KL+++   N 
Sbjct: 447 IDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENS 506

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
           G +VLLSN+YA   RW+DV RVR  +  + +KKVPG S IEV  V+H+F   DK H + R
Sbjct: 507 GSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRR 566

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           EIY  L+E+  +++E G+A  TS VL ++ EE KE AL +HSEKLA+AFGLIST   T +
Sbjct: 567 EIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKL 626

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            + KNLR+CR+CH+  KLISK+Y REI+ RDR RFH F+DG CSC DYW
Sbjct: 627 TIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 201/391 (51%), Gaps = 41/391 (10%)

Query: 46  IIEFYALSP-LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH 104
           ++E   +SP  + L YA ++F  I  P+   +N +LRG A SS P +A+  Y +M+   H
Sbjct: 1   LLELCVVSPHFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGH 60

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA-- 162
             ++ +  F LK+CA+  A  E  QIH+ VL+ G   D  + T+L+ +YA+ G +  A  
Sbjct: 61  LPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARK 120

Query: 163 -----------------------------KKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
                                        +KVFDE+  RD+ SWNA+I G  +     EA
Sbjct: 121 VFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEA 180

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER----LDMNVVVCN 249
           ++LFK M M    +P+E T++  ++AC   G+ + G ++H ++ ++        ++ + N
Sbjct: 181 LELFKEM-MRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVN 239

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           A+ID+Y+KCG ++ AF +F+ + C K +V+WNT++  +        AL LF++M R+G  
Sbjct: 240 ALIDLYSKCGDVETAFGLFEGLSC-KDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGEC 298

Query: 310 PDDVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
           P+DV+ L+ L AC H G +D G  + ++      GV        S++D+  + G ++ A 
Sbjct: 299 PNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAH 358

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +  S+ +   +  W  ++    ++G    A
Sbjct: 359 QVFNSM-LYRSLSSWNAMIFGFAMHGRANAA 388



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 158/316 (50%), Gaps = 14/316 (4%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F S L  + + +I+ Y  S   ++  A  LF  ++      +N ++ G  H++    A+L
Sbjct: 231 FSSSL-KIVNALIDLY--SKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALL 287

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR--HGFLADALLGTTLLDV 152
            +++MLR     + +T    L ACA + A+     IH ++ +   G   +  L T+L+D+
Sbjct: 288 LFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDM 347

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           YAK G+I +A +VF+ M  R ++SWNA+I G A    A+ A DLF RM+   V +P+++T
Sbjct: 348 YAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRV-EPDDIT 406

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
            +G L+AC H G    G +I + + ++  L   +     +ID+    GL  +A E+   +
Sbjct: 407 FVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTM 466

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK--PDDV-SYLAALCACNHAGLV 328
                 V W +++ A   HG+    LEL E   +  +K  P++  SY+        AG  
Sbjct: 467 PMEPDGVIWCSLLKACKKHGN----LELAESFAQKLIKIEPENSGSYVLLSNIYATAGRW 522

Query: 329 DDGVRLFNSMANCGVK 344
           +D  R+   +   G+K
Sbjct: 523 EDVARVRGVLNGKGMK 538



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L  A  VF+ I+   +L+ WNTM+   A   D   ALE++ +M   G  P+  S+   L 
Sbjct: 14  LPYAISVFETIQ-EPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLK 72

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           +C  +   ++G ++   +   G   +   + S++ +  R G L++A  +  + S   D+V
Sbjct: 73  SCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSH-RDVV 131

Query: 381 LWQTLLGACQLYGDVEMA-----EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
               L+      GD   A     EI  R +V   +   G        Y    R+++   +
Sbjct: 132 SCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITG--------YVENGRYEEALEL 183

Query: 436 RKAMKNRDVKKVPG 449
            K M   +V+   G
Sbjct: 184 FKEMMRTNVRPDEG 197


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/561 (39%), Positives = 343/561 (61%), Gaps = 7/561 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           + +QA+    G    +   V S +I  YA     ++A A  +F          +NA++  
Sbjct: 140 RGVQAYAVKRGLVADRF--VLSSLIHMYA--SCGDVAAARLVFDAAEESGVVMWNAIVAA 195

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              +      V  ++ ML      D +T    + AC R+        +  HV   G   +
Sbjct: 196 YLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARN 255

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             L T L+D+YAK GEI  A+++FD M  RD+ +W+A+I+G  Q +   EA+ LF  M++
Sbjct: 256 PKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQL 315

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
             V +PN+VT++  L+AC  LGA + G  +H Y+R +RL +  ++  A++D YAKCG +D
Sbjct: 316 ARV-EPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCID 374

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A E F+++  + S  TW  ++   A +G G  ALELF  M  AG++P DV+++  L AC
Sbjct: 375 DAVEAFESMPVKNSW-TWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMAC 433

Query: 323 NHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +H+ LV++G R F+SMA + G+KP ++HYG +VDLLGRAG + EA   ++++ +  + V+
Sbjct: 434 SHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVI 493

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W+ LL +C ++ +V + E A ++++ +  ++ GD+VLLSN+YA+  +W D   VRK MK+
Sbjct: 494 WRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKD 553

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           R ++K PG S IE+ GV+ +FF  D  H + REIY+K++E++ +IK  GY   T+ V  +
Sbjct: 554 RGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLE 613

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           + E EKE ++ +HSEKLA+AFGL+      +I++ KNLR+C DCH   KLISKVY+REI+
Sbjct: 614 VEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIV 673

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRDR  FH FKDG CSC DYW
Sbjct: 674 VRDRNIFHHFKDGTCSCNDYW 694



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 170/315 (53%), Gaps = 8/315 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAP--STNDFNA 78
           ++ QL A L  +G+         S ++E  A SP   L YA +LFR    P  ST  +N 
Sbjct: 31  YLPQLHAALIKSGELTGSAKSFHS-LLEAAAASP-TLLPYAVSLFRLGPRPPLSTPCYNV 88

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKACARVLALFETLQIHSHVLR 136
           ++R   H+  P +A+  + +ML  +    +D  T + ALK+C+R+ AL     + ++ ++
Sbjct: 89  LMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVK 148

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G +AD  + ++L+ +YA  G++ +A+ VFD      +  WNA++A   +     E V++
Sbjct: 149 RGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEM 208

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           FK M   GV   +EVT++  + ACG +G  K G  +  ++ EE L  N  +  A++DMYA
Sbjct: 209 FKGMLEVGVAF-DEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYA 267

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG + KA  +FD ++ R  +V W+ M+  +        AL LF +M  A V+P+DV+ +
Sbjct: 268 KCGEIGKARRLFDGMQSR-DVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMV 326

Query: 317 AALCACNHAGLVDDG 331
           + L AC   G ++ G
Sbjct: 327 SVLSACAVLGALETG 341


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/611 (37%), Positives = 355/611 (58%), Gaps = 53/611 (8%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           +KQ+ A L  TGQ       + ++I+   A S   ++ YA ++F Q+   +   +N V+R
Sbjct: 31  LKQVHAFLVKTGQTHDN--AIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIR 88

Query: 82  GLAHSS-KPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
            LA +  +  +A+L + QML   +   +  T    LKACA +  L E  Q+H  +L+ G 
Sbjct: 89  ALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGL 148

Query: 140 LADALLGTTLL-----------------------------------------------DV 152
           + D  + T LL                                               D 
Sbjct: 149 VDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDG 208

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           YA+VG + +A+++FD M  R + SWN +I+G AQ     EA+++F RM   G   PN VT
Sbjct: 209 YARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVT 268

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           ++  L A   LG  + G  +H Y  + ++ ++ V+ +A++DMYAKCG ++KA +VF+ + 
Sbjct: 269 LVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLP 328

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
            + +++TWN ++   A+HG          +M + G+ P DV+Y+A L AC+HAGLVD+G 
Sbjct: 329 -QNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGR 387

Query: 333 RLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             FN M N  G+KP ++HYG +VDLLGRAG L+EA +++ ++ M  D V+W+ LLGA ++
Sbjct: 388 SFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKM 447

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           + ++++   A+  L++M  ++ G +V LSN+YA+   WD V  VR  MK+ D++K PG S
Sbjct: 448 HKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCS 507

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
           +IE+ GVIH+F   D SH + ++I+  L+EI  K+   G+   T+ VL  + E+ KE+ L
Sbjct: 508 WIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVL 567

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
            YHSEK+AVAFGLIST   T + + KNLRIC DCH  +KLISK+Y R+I++RDR RFH F
Sbjct: 568 HYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHF 627

Query: 572 KDGACSCKDYW 582
           + G+CSC DYW
Sbjct: 628 EHGSCSCMDYW 638



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 149/332 (44%), Gaps = 60/332 (18%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG--EIVSAKKVFDEMGVR 172
           +KAC    ++ E  Q+H+ +++ G   D  + T +L + A     +I  A  VFD++  R
Sbjct: 22  IKACK---SMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPER 78

Query: 173 DIASWNALIAGLAQG-NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           +  +WN +I  LA+  +   +A+ +F +M  E   +PN+ T    L AC  +    EG +
Sbjct: 79  NCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQ 138

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDK---------------------------- 263
           +H  + +  L  +  V   ++ MY  CG ++                             
Sbjct: 139 VHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFN 198

Query: 264 -------------------AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
                              A E+FD +  ++S+V+WN M+  +A +G    A+E+F +M 
Sbjct: 199 VVLCNVMVDGYARVGNLKAARELFDRM-AQRSVVSWNVMISGYAQNGFYKEAIEIFHRMM 257

Query: 305 RAG-VKPDDVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           + G V P+ V+ ++ L A +  G+++ G  V L+       +   +    ++VD+  + G
Sbjct: 258 QMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLG--SALVDMYAKCG 315

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            +++A  + + +    +++ W  ++G   ++G
Sbjct: 316 SIEKAIQVFERLPQ-NNVITWNAVIGGLAMHG 346


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/525 (41%), Positives = 331/525 (63%), Gaps = 5/525 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F +I       +NA++ G   +     A+  +++M++ + R D  T    + A AR
Sbjct: 148 ARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASAR 207

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             ++    Q+HS +  HGF ++  +   L+D Y+K GE+ +A  +F  +  +D+ SWN L
Sbjct: 208 SGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNIL 267

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI--RE 238
           I G    NL  EA+ LF+ M   G   PN+VT+L  L AC HLGA   G  IH YI  R 
Sbjct: 268 IGGYTHLNLYKEALLLFQEMLRSGE-SPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRL 326

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           + +     +  ++IDMY+KCG ++ A +VF+++   KSL  WN M+  FA+HG    A +
Sbjct: 327 KGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSM-LHKSLPAWNAMIFGFAMHGRANAAFD 385

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           +F +M +  +KPDD++++  L AC+HAG++D G  +F SM  N  + P ++HYG ++DLL
Sbjct: 386 IFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLL 445

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           G +G  +EA +++ +++M  D V+W +LL AC+++G+VE+ E  ++ L ++  NN G +V
Sbjct: 446 GHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYV 505

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YA   RW++V R+R  + ++ +KKVPG S IE+  V+H+F   DK H + REIY 
Sbjct: 506 LLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 565

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            L+E+   ++E G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   T + + K
Sbjct: 566 MLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVK 625

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+CR+CH+  KLISK+Y REII RDR RFH F+DG CSC DYW
Sbjct: 626 NLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 199/392 (50%), Gaps = 38/392 (9%)

Query: 47  IEFYALSPLNE-LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +EF  LSP  E L YA ++F  I  P+   +N + RG A S  P +A+  Y  M+     
Sbjct: 1   LEFCILSPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLL 60

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV------------- 152
            ++ T  F LK+CA++ A  E LQIH HVL+ G+  D  + T+L+ +             
Sbjct: 61  PNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKV 120

Query: 153 ------------------YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194
                             YA  G I SA+ +FDE+ V+D+ SWNA+I+G  +     EA+
Sbjct: 121 FDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEAL 180

Query: 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
           +LFK M M+   +P+E T++  ++A    G+ + G ++H +I +     N+ + NA+ID 
Sbjct: 181 ELFKEM-MKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDF 239

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
           Y+KCG ++ A  +F  +   K +++WN ++  +        AL LF++M R+G  P+DV+
Sbjct: 240 YSKCGEMETACGLFLGLS-YKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVT 298

Query: 315 YLAALCACNHAGLVDDG--VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
            L+ L AC H G +D G  + ++      GV        S++D+  + G ++ A  +  S
Sbjct: 299 MLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNS 358

Query: 373 VSMGTDMVLWQTLLGACQLYGDVEMA-EIASR 403
           + +   +  W  ++    ++G    A +I SR
Sbjct: 359 M-LHKSLPAWNAMIFGFAMHGRANAAFDIFSR 389



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 139/277 (50%), Gaps = 16/277 (5%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +Q+ + +   G F S L  + + +I+FY  S   E+  A  LF  ++      +N ++ G
Sbjct: 215 RQVHSWIADHG-FGSNL-KIVNALIDFY--SKCGEMETACGLFLGLSYKDVISWNILIGG 270

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH--GFL 140
             H +    A+L +++MLR     + +T    L ACA + A+     IH ++ +   G  
Sbjct: 271 YTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVT 330

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
             + L T+L+D+Y+K G+I +A +VF+ M  + + +WNA+I G A    A+ A D+F RM
Sbjct: 331 NASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRM 390

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKI-----HEYIREERLDMNVVVCNAVIDMY 255
           +   + KP+++T +G L+AC H G    G  I     H Y    +L+        +ID+ 
Sbjct: 391 RKNEI-KPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEH----YGCMIDLL 445

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
              GL  +A E+   +      V W +++ A  +HG+
Sbjct: 446 GHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGN 482


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/604 (38%), Positives = 364/604 (60%), Gaps = 36/604 (5%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
             L  L QKC++   +  IH + +   L+      S L  + SK            L YA
Sbjct: 150 PTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCLSHLIKISSKF----------NLPYA 199

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTN---AVLWYRQMLRGSH-RSDALTCSFALKA 117
             +F  I+ P+   +N ++  L + +       A   Y ++L   + + ++ T     KA
Sbjct: 200 FKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKA 259

Query: 118 CARVLALFET-LQIHSHVLRHGFLA---DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           C    + F     +H+HVL+  FL    D  +  +LL+ YAK G++  ++ +FD +   D
Sbjct: 260 CCSNQSWFHYGPLLHTHVLK--FLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPD 317

Query: 174 IASWNALIAGLAQ-------------GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           +A+WN ++   A+              + + E++ LF+ M++ G+ +PNEVT++  ++AC
Sbjct: 318 LATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGI-RPNEVTIVALISAC 376

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI-KCRKSLVT 279
            +LGA  +G  +H ++   ++ MN  V  A +DMY+KCG L+ A +VFD + +  +    
Sbjct: 377 SNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFC 436

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           +  M+  FAVHG G +ALEL+ +M   G+ PD  +++  + AC+H GLV++G+ +F SM 
Sbjct: 437 YTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMK 496

Query: 340 NC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              GV+P ++HYG ++DLLGRAGRL+EA + +  + M  + VLW++LLGA +++G++ + 
Sbjct: 497 EVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVG 556

Query: 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGV 458
           E+A  KL+E+     G++VLLSN+YA+  R +DV RVRK MK+  V K+PGFS +E+ G 
Sbjct: 557 EVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGA 616

Query: 459 IHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKL 518
           +H+F T D+SH   +EIY K+ EI  +++EYG+ A TS  L D+ EE+KE  L YHSE+L
Sbjct: 617 MHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERL 676

Query: 519 AVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSC 578
           A+AF LI++  + +I++ KNLR+C DCH   KLIS  Y+REIIVRDR RFH FKDG+CSC
Sbjct: 677 AIAFALIASPSSLAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSC 736

Query: 579 KDYW 582
            DYW
Sbjct: 737 LDYW 740


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/575 (39%), Positives = 346/575 (60%), Gaps = 10/575 (1%)

Query: 15  GAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPST 73
            +   +H++Q+ A L  T   ++    V        ALS +  ++ Y+  +F Q   P+ 
Sbjct: 20  SSTGKLHLRQIHAVLLRTSLIRNS--DVFHHFFSRLALSLIPRDINYSCRVFSQRLNPTL 77

Query: 74  NDFNAVLRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFALKACARVLALFETLQIHS 132
           +  N ++R  + S  P      +R + R  S  ++ L+ SFALK C +   L   LQIH 
Sbjct: 78  SHCNTMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIHG 137

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
            +   GFL+D+LL TTL+D+Y+       A KVFDE+  RD  SWN LI+   +     +
Sbjct: 138 KIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRD 197

Query: 193 AVDLFKRMK--MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
            + LF +MK  ++   KP+ VT L AL AC +LGA   G ++H++I E  L   + + N 
Sbjct: 198 VLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNT 257

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           ++ MY++CG +DKA+EVF+ ++  +++V+W  M+   A++G G  A+E F +M + G+ P
Sbjct: 258 LVSMYSRCGSMDKAYEVFNRMR-ERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISP 316

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSM--ANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           ++ +    L AC+H+GLVD+G+  F+ M      +KPN+ HYG +VDLLGRA  L +A  
Sbjct: 317 EEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYS 376

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428
           ++KS+ M  D  +W+TLLGAC+++G+VE+ E     L+E  +   GD+VLL N Y++  +
Sbjct: 377 LIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYVLLLNTYSSVGK 436

Query: 429 WDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKE 488
           W+ V  +R  MK + ++  PG S IE+ G +H+F   D SH +  EIY+ L EI  ++K 
Sbjct: 437 WEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKI 496

Query: 489 YGYAAGTSCVLHDI-GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHD 547
            GY A  +  LH++  EEEK  AL YHSEKLA+AFG++ T   T+I+V KNLR C DCH+
Sbjct: 497 AGYVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTIRVTKNLRTCVDCHN 556

Query: 548 VIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             K +S VY+R +IVRDR RFH FK G+CSC D+W
Sbjct: 557 FAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/615 (39%), Positives = 358/615 (58%), Gaps = 51/615 (8%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE-LAYAHALFR 66
            +KC S   +   H + ++  L++     + L P    +I F A +  ++ L YA  LF 
Sbjct: 29  FEKCQSMSQLRQYHSQIIRLGLSS----HNHLIP---PLINFCARASTSDALTYALKLFD 81

Query: 67  QINAPSTNDFNAVLRGLAHSSK-PTNAVLW-YRQMLRGSHRSDALTCSFALKACARVLAL 124
            I  P    +N +++G  HS   PTN++L  Y  ML+ S   +  T    L AC ++   
Sbjct: 82  SIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQ-- 139

Query: 125 FETLQIHSHVLRHGFLA-------------------------------DALLGTTLLDVY 153
              +QIH+H+ + GF A                               D++  T+L+  Y
Sbjct: 140 -HGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGY 198

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           +K G I  A  +F  M  ++ ASWNA++A   Q N   EA  LF RMK E     ++   
Sbjct: 199 SKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVA 258

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK- 272
              L+AC  LGA  +G  IHEYI+   ++++  +  A++DMY KCG L+KA +VF ++  
Sbjct: 259 TTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPL 318

Query: 273 -CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
            CR  + +WN M+   A+HG+G  A++LF++M R  V PDD+++L  L AC H+GLV++G
Sbjct: 319 PCR-WISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEG 377

Query: 332 VRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
              F+ M    G++P M+H+G +VDLLGRAG + EA  ++  + +  D+ +  TLLGAC+
Sbjct: 378 RNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACK 437

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
            + ++E+ E   R+++E+  NN G +VLL+NLYA   +W+D  +VRK M +R VKK PGF
Sbjct: 438 KHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGF 497

Query: 451 SYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL--HDIGEEEK- 507
           S IE+ G +H+F   +++H + +E++ K+ E++  +K  GY A T+ VL  HD  EEE  
Sbjct: 498 SMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDG 557

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           EN L YHSEKLA+AFGL  T    ++++ KNLRIC DCH   KLIS V++REIIVRDR R
Sbjct: 558 ENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTR 617

Query: 568 FHRFKDGACSCKDYW 582
           FHRFK G CSC+DYW
Sbjct: 618 FHRFKMGQCSCQDYW 632


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/582 (38%), Positives = 355/582 (60%), Gaps = 17/582 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE-LAYAHAL 64
           A+L   ++    S  H+KQ  A +  TG  Q     +   +++ YA    N  L++  +L
Sbjct: 55  AILHLLNTQCTTSLHHLKQAHALILRTGHLQDSY--IAGSLVKSYANVSTNRYLSFESSL 112

Query: 65  --FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
             F  +  P+   +N +++    +++P  A+L Y +M+    R +  T    LKAC+   
Sbjct: 113 RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAG 172

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            + E +Q+H+H+++HG   D  + ++ + +YA  G +V A+++ D+ G       +A+  
Sbjct: 173 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKG----GEVDAVCM 228

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
              +G    EA+++F +M+ E + +P +  +   L+AC +LGA  +G  IH Y +   + 
Sbjct: 229 PDRKGCFM-EALEIFHQMQKEKI-RPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQ 286

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
           ++ V+  +++DMYAKCG +D A+EVF+ +   K + +WN M+   A+HG    A++LF +
Sbjct: 287 LDGVLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDAIDLFSK 345

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAG 361
           M    + P++++++  L AC H GLV  G+ +FNSM    GV+P ++HYG +VDLLGRAG
Sbjct: 346 MD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAG 402

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L EA  +V S+       +W  LLGAC+ +G+VE+ E   + L+E+   N G + LLSN
Sbjct: 403 LLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSN 462

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG-GVIHKFFTSDKSHVKWREIYEKLD 480
           +YA   RW++VG VRK MK R +K  PG S I++G G +HKF   D SH + ++IY+ LD
Sbjct: 463 IYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLD 522

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           ++  +++  GY    S VL DI EEEKE A+  HSEKLA+ FGLI+TS  T+I++ KNLR
Sbjct: 523 KVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLR 582

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +C DCH   KLIS+VYNREIIVRDR+R+H F++GACSCKD+W
Sbjct: 583 VCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/542 (40%), Positives = 332/542 (61%), Gaps = 4/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  YA      L  A   F+Q+       +N+++     +  P  A  ++ +M  
Sbjct: 353 VSNALINMYA--KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQL 410

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL-ADALLGTTLLDVYAKVGEIV 160
              + D LT        A+      +  +H  ++R G+L  D ++G  ++D+YAK+G + 
Sbjct: 411 NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLD 470

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           SA KVF+ + V+D+ SWN LI G AQ  LASEA++++K M+      PN+ T +  L A 
Sbjct: 471 SAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAY 530

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
            H+GA ++G KIH  + +  L ++V V   +ID+Y KCG L  A  +F  +  ++S VTW
Sbjct: 531 AHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTW 589

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           N ++    +HG   + L+LF +M   GVKPD V++++ L AC+H+G V++G   F  M  
Sbjct: 590 NAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE 649

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            G+KP++KHYG +VDLLGRAG L+ A D +K + +  D  +W  LLGAC+++G++E+ + 
Sbjct: 650 YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKF 709

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           AS +L E+ S N G +VLLSN+YA   +W+ V +VR   + R +KK PG+S IEV   + 
Sbjct: 710 ASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVD 769

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F+T ++SH K +EIYE+L  +  K+K  GY    S VL D+ E+EKE+ L  HSE+LA+
Sbjct: 770 VFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAI 829

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AFG+IST   + I++FKNLR+C DCH+  K IS++  REI+VRD  RFH FKDG CSC D
Sbjct: 830 AFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGD 889

Query: 581 YW 582
           YW
Sbjct: 890 YW 891



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 182/364 (50%), Gaps = 8/364 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           FQ  +F V + +I  Y  S       A +LF  +       +NA++ GL  +     A+ 
Sbjct: 246 FQWNVF-VAASLIHMY--SRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 302

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
              +M     + + +T    L  C ++  +   + IH +V++HG   D  +   L+++YA
Sbjct: 303 VLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYA 362

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G +  A+K F +M + D+ SWN++IA   Q +    A   F +M++ G F+P+ +T++
Sbjct: 363 KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNG-FQPDLLTLV 421

Query: 215 GALAACGHLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
              +        K    +H +I R   L  +VV+ NAV+DMYAK GLLD A +VF+ I  
Sbjct: 422 SLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPV 481

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGV 332
            K +++WNT++  +A +G    A+E+++ M     + P+  ++++ L A  H G +  G+
Sbjct: 482 -KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGM 540

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
           ++   +    +  ++     ++D+ G+ GRL +A  +   V   +  V W  ++    ++
Sbjct: 541 KIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-VTWNAIISCHGIH 599

Query: 393 GDVE 396
           G  E
Sbjct: 600 GHAE 603



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 185/367 (50%), Gaps = 14/367 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K L A L   G+ QS    + ++++  YA   L +++ +   F QI       +N+++  
Sbjct: 136 KCLHALLVVAGKVQSIF--ISTRLVNLYA--NLGDVSLSRCTFDQIPQKDVYAWNSMISA 191

Query: 83  LAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
             H+     A+  + Q+L  S  R D  T    LKAC     L +  +IH    + GF  
Sbjct: 192 YVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIHCWAFKLGFQW 248

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           +  +  +L+ +Y++ G    A+ +FD+M  RD+ SWNA+I+GL Q   A++A+D+   M+
Sbjct: 249 NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 308

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           +EG+ K N VTV+  L  C  LG       IH Y+ +  L+ ++ V NA+I+MYAK G L
Sbjct: 309 LEGI-KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY--LAAL 319
           + A + F  +     +V+WN+++ A+  + D   A   F +M   G +PD ++   LA++
Sbjct: 368 EDARKAFQQMFI-TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASI 426

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            A +        V  F  M    +  ++    +VVD+  + G L  A  + + + +  D+
Sbjct: 427 VAQSRDCKNSRSVHGF-IMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPV-KDV 484

Query: 380 VLWQTLL 386
           + W TL+
Sbjct: 485 ISWNTLI 491


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/599 (39%), Positives = 350/599 (58%), Gaps = 40/599 (6%)

Query: 18  SHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQI--NAPSTND 75
           S   ++Q+ A +  T    S L   R  ++   A +P     YA  +F+ +    P T  
Sbjct: 40  SPFELRQVHAQIIKTNAPLSILPLTRVGLV--CAFTP--SFHYAQQIFKCVEKQKPETFV 95

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N+ L+ LA    P +A++ + ++ +     D  TCS  L+AC  +L L     +H  V 
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN----------------- 178
           + GF ++  L   ++ +YA  GE+  A+ +F++M  RD+ +WN                 
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 179 --------------ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
                         ++IAG  Q   A EA+ LF +M+  GV K NEVTV+  LAAC  LG
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGV-KCNEVTVVAVLAACADLG 274

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A   G +IHEY        NV + N +IDMY KCG L++A +VF+ ++  +++V+W+ M+
Sbjct: 275 ALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMI 333

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGV 343
              A+HG    AL LF  M + G++P+ V+++  L AC+H GL+ +G R F SM  + G+
Sbjct: 334 GGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGI 393

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
            P ++HYG +VDLL RAG L EA + + ++ M  + V+W  LLGAC+++ +VEMAE A +
Sbjct: 394 IPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIK 453

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
            L+E+   N G +V+LSN+YA   RW+D  RVRK MK+R VKK PG+S I V GV+H+F 
Sbjct: 454 HLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFV 513

Query: 464 TSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFG 523
             ++SH    +I+++ +E++ +++  GY   TS VL DI E EK   +  HSEKLA+ FG
Sbjct: 514 AGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFG 573

Query: 524 LISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           L++T   T I++ KNLRIC DCH   KLIS + NREI+VRDR RFH F D +CSC+DYW
Sbjct: 574 LMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/596 (37%), Positives = 352/596 (59%), Gaps = 30/596 (5%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LLQ C  N  +  I+ K ++ H         +L  V          S LN + YA  +F
Sbjct: 37  SLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRV---------CSNLNSIGYASKIF 87

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
                P+   + A++ GL  S   T+ +  Y QM+  S   D+   +  LKAC   LAL 
Sbjct: 88  SHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALK 147

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---------------- 169
           E  ++HS VL+ G  ++  +   L+++Y K G    A++VFDEM                
Sbjct: 148 EGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYF 207

Query: 170 --GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227
             G++D   W A+I GL +   ++ A+++F+ M+ E V  PNEVT++  L+AC  LGA +
Sbjct: 208 DHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVM-PNEVTIVCVLSACSELGALQ 266

Query: 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
            G  +  Y+ + R+++N  V  A+I+MY++CG +D+A  VF+ +K  K+++T+N+M+M F
Sbjct: 267 LGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMK-EKNVITYNSMIMGF 325

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPN 346
           A+HG    A+ELF  + + G  P  V+++  L AC+H GL + G  +F+SMA + G++P 
Sbjct: 326 ALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQ 385

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
           ++HYG +VDLLGR GRL+EA   ++ + +  D V+   LL AC+++G++E+AE  ++ LV
Sbjct: 386 IEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLV 445

Query: 407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSD 466
              + + G ++LLSN Y++  +W +   VR  M+   ++K PG S IEV   IH+F   D
Sbjct: 446 ACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGD 505

Query: 467 KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIS 526
             H +  +IY+KL+E+   ++  GY   T  VLHDI + EKE AL  HSE+LA+ +GLIS
Sbjct: 506 LRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLIS 565

Query: 527 TSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           T   T+++V KNLR+C DCH  IKLIS +  R+I+VRDR RFH F++G CSC DYW
Sbjct: 566 TKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/526 (41%), Positives = 337/526 (64%), Gaps = 7/526 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF +I       +NA++ G A +     A+  +++M++ + R D  T    + ACA+
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQ 278

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             ++    Q+HS +  HGF ++  +  +L+D+Y+K GE+ +A  +F+ +  +D+ SWN L
Sbjct: 279 SGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTL 338

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G    NL  EA+ LF+ M   G  +PN+VT+L  L AC HLGA   G  IH YI ++R
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGE-RPNDVTMLSILPACAHLGAIDIGRWIHVYI-DKR 396

Query: 241 LDMNVVVCN---AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           L       +   ++IDMYAKCG ++ A +VF++I   KSL +WN M+  FA+HG    A 
Sbjct: 397 LKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADAAF 455

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDL 356
           ++F +M + G++PDD++++  L AC+ +G++D G  +F +M  +  + P ++HYG ++DL
Sbjct: 456 DIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDL 515

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           LG +G  +EA +++ ++ M  D V+W +LL AC++ G+VE+ E  ++ L+++   N G +
Sbjct: 516 LGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCY 575

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSN+YA   RW++V ++R  + ++ +KKVPG S IE+  V+H+F   DK H + REIY
Sbjct: 576 VLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 635

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
             L+E+   +++ G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   T + + 
Sbjct: 636 GMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 695

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+CR+CH+  KLISK+Y REII RDR RFH F+DG CSC DYW
Sbjct: 696 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 240/485 (49%), Gaps = 52/485 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSP-LNELAYAHAL 64
           +LL  C +  ++  IH + ++  L  T    SKL       +E   +SP  + L YA ++
Sbjct: 38  SLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKL-------LELCVISPHFDGLPYAISV 90

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F  I  P+   +N + RG A SS P +A+  Y  M+      ++ T  F LK+CA+  A 
Sbjct: 91  FETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAF 150

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDV-------------------------------Y 153
            E  QIH HVL+ G+  D  + T+L+ V                               Y
Sbjct: 151 KEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGY 210

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           A  G I SA+K+FDE+ V+D+ SWNA+I+G A+     EA++LFK M M+   +P+E T+
Sbjct: 211 ASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEM-MKTNIRPDESTM 269

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           +  ++AC   G+ + G ++H +I +     N+ + N+++D+Y+KCG L+ A  +F+ +  
Sbjct: 270 VTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGL-L 328

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG-- 331
            K +++WNT++  +        AL LF++M R+G +P+DV+ L+ L AC H G +D G  
Sbjct: 329 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRW 388

Query: 332 --VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
             V +   + +     +++   S++D+  + G ++ A  +  S+ +   +  W  ++   
Sbjct: 389 IHVYIDKRLKSATNASSLR--TSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGF 445

Query: 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD--DVGRVRKAMKNRDVKKV 447
            ++G  + A     ++ ++G     D +    L +A  R    D+GR       +D K  
Sbjct: 446 AMHGRADAAFDIFSRMRKIGIE--PDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKIT 503

Query: 448 PGFSY 452
           P   +
Sbjct: 504 PKLEH 508



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 159/312 (50%), Gaps = 16/312 (5%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           + +  ++  C+ +G++     +Q+ + +   G F S L  V S +++ Y  S   EL  A
Sbjct: 267 STMVTVVSACAQSGSIELG--RQVHSWIDDHG-FGSNLKIVNS-LMDLY--SKCGELETA 320

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             LF  +       +N ++ G  H +    A+L +++MLR   R + +T    L ACA +
Sbjct: 321 CGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHL 380

Query: 122 LALFETLQIHSHV---LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
            A+     IH ++   L+    A + L T+L+D+YAK G+I +A +VF+ +  + ++SWN
Sbjct: 381 GAIDIGRWIHVYIDKRLKSATNASS-LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 439

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           A+I G A    A  A D+F RM+  G+ +P+++T +G L+AC   G    G  I   + +
Sbjct: 440 AMIFGFAMHGRADAAFDIFSRMRKIGI-EPDDITFVGLLSACSRSGMLDLGRHIFRTMTQ 498

Query: 239 E-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           + ++   +     +ID+    GL  +A E+ +N++     V W +++ A  + G+    +
Sbjct: 499 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGN----V 554

Query: 298 ELFEQMGRAGVK 309
           EL E   +  +K
Sbjct: 555 ELGESFAQNLIK 566


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/612 (37%), Positives = 361/612 (58%), Gaps = 55/612 (8%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLN--ELAYAHALFRQINAPSTNDFNAV 79
           + Q+ A    +GQ +  L    ++I+ F A S L+  +L YAH +F Q+   +   +N +
Sbjct: 39  LSQIHAVFIKSGQMRDTL--AAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTI 96

Query: 80  LRGLAHSSKPTNAV---LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           +RG + S +    +   L+Y  M       +  T    LKACA+   + E  QIH   L+
Sbjct: 97  IRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALK 156

Query: 137 HGFLADA---------------------------------------------LLGTTLLD 151
           +GF  D                                              +L   ++D
Sbjct: 157 YGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMID 216

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
            Y ++G+  +A+ +FD+M  R + SWN +I+G +      +AV++F+ MK +G  +PN V
Sbjct: 217 GYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK-KGDIRPNYV 275

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T++  L A   LG+ + G+ +H Y  +  + ++ V+ +A+IDMY+KCG+++KA  VF+ +
Sbjct: 276 TLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERL 335

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
             R++++TW+ M+  FA+HG    A++ F +M +AGV+P DV+Y+  L AC+H GLV++G
Sbjct: 336 P-RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394

Query: 332 VRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
            R F+ M +  G++P ++HYG +VDLLGR+G L EA + + ++ +  D V+W+ LLGAC+
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACR 454

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
           + G+VEM +  +  L++M  ++ G +V LSN+YA+   W +V  +R  MK +D++K PG 
Sbjct: 455 MQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGC 514

Query: 451 SYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           S I++ GV+H+F   D SH K +EI   L EI  K++  GY   T+ VL ++ EE+KEN 
Sbjct: 515 SLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENV 574

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           L YHSEK+A AFGLISTS    I++ KNLRIC DCH  IKLISKVY R+I VRDR RFH 
Sbjct: 575 LHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHH 634

Query: 571 FKDGACSCKDYW 582
           F+DG+CSC DYW
Sbjct: 635 FQDGSCSCMDYW 646


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/546 (40%), Positives = 333/546 (60%), Gaps = 35/546 (6%)

Query: 71  PSTNDFNAVLRGLA-HSSKPTNAVLWYRQM-LRGSHRSDALTCSFALKACARVLALFETL 128
           P+   +NA+L+  + H++  T    +  Q+ L  +   D  T +  LKACA +  + E  
Sbjct: 88  PNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQ 147

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA------ 182
           ++H  V ++G  ++  +  +L+D+Y KVG    A+K+FDEM VRD+ SWN LI+      
Sbjct: 148 KVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSG 207

Query: 183 ----------GLAQGNLAS---------------EAVDLFKRMKMEGVFKPNEVTVLGAL 217
                     G+ + NL S               +A++LF++M+ EG   PN+VT++  L
Sbjct: 208 MVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVL 267

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
           +AC HLGA   G  IH +IR  ++++ + + NA+ DMYAKCG + +A  VF  +   + +
Sbjct: 268 SACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMH-ERDV 326

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           ++W+ ++M  A++G    A   F +M   G++P+D+S++  L AC HAGLVD G+  F+ 
Sbjct: 327 ISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDM 386

Query: 338 MANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
           M    G+ P ++HYG VVDLL RAGRL +A  ++ S+ M  ++++W  LLG C++Y D E
Sbjct: 387 MPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAE 446

Query: 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
             E    +++E+ SN+ G  V L+N+YA+  R DD    R  M++    K PG S+IE+ 
Sbjct: 447 RGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEIN 506

Query: 457 GVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSE 516
             +++FF  D SH +   IY  + E+ +K+K  GY   T  V+H+I EEEKE+AL  HSE
Sbjct: 507 NSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSE 566

Query: 517 KLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
           KLA+AFGLI+TSE T+I++ KNLR+C DCHD IK+ISK+  REI+VRDR RFH FKDG C
Sbjct: 567 KLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKC 626

Query: 577 SCKDYW 582
           SC DYW
Sbjct: 627 SCNDYW 632


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/579 (38%), Positives = 356/579 (61%), Gaps = 13/579 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALF 65
           L+ KC+S   +  I    +++H               +K+I F   SP  + ++YA  LF
Sbjct: 37  LISKCNSERELMQIQAYAIKSHQEDVS--------FNTKLINFCTESPTESSMSYARHLF 88

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             ++ P    FN++ RG + S+ P      + ++L      D  T    LKACA   AL 
Sbjct: 89  DAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALE 148

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E  Q+H   ++ G   +  +  TL+++Y +  ++ +A+ VFD +    +  +NA+I G A
Sbjct: 149 EGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYA 208

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           + N  +EA+ LF+ M+ + + KPNE+T+L  L++C  LG+   G  IHEY ++      V
Sbjct: 209 RRNRPNEALSLFREMQGKNL-KPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYV 267

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V  A+IDM+AKCG LD A  +F+N++  K    W+ M++A+A HG    ++ +FE+M  
Sbjct: 268 KVNTALIDMFAKCGSLDDAVSIFENMR-YKDTQAWSAMIVAYANHGQAENSMLMFERMRS 326

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQ 364
             V+PD++++L  L AC+H GLV++G   F+ M +  G+ P++KHYGS+VDLLGRAG L+
Sbjct: 327 ENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLE 386

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           +A + +  + +    +LW+ LL AC  + ++E+AE  S +++E+  ++ GD+V+LSNLYA
Sbjct: 387 DAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYA 446

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
             ++W+ V  +RK MK+R   KVPG S IEV  V+H+FF+ D       +++  LDE++ 
Sbjct: 447 RNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVK 506

Query: 485 KIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
           ++K  GY   TS V+H D+G++EKE  L YHSEKLA+AFGL++T   T+I+V KNLR+CR
Sbjct: 507 ELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCR 566

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH   KLIS ++ R++++RD  RFH F+DG CSC+D+W
Sbjct: 567 DCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/526 (42%), Positives = 330/526 (62%), Gaps = 6/526 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  I       +NA++ G   +     A+  +++M+R + R D  T    L ACA+
Sbjct: 168 ARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQ 227

Query: 121 VLALFETLQIHSHVL-RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
             ++    +IH+ V   HGF +   +    + +Y+K G++  A  +F+ +  +D+ SWN 
Sbjct: 228 SGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNT 287

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI--R 237
           LI G    NL  EA+ LF+ M   G   PN+VT+L  L AC HLGA   G  IH YI  R
Sbjct: 288 LIGGYTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKR 346

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
            + +     +  ++IDMYAKCG ++ A +VF+++   KSL +WN M+  FA+HG    A 
Sbjct: 347 LKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMM-HKSLSSWNAMIFGFAMHGRANAAF 405

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDL 356
           +LF +M + G++PDD++ +  L AC+H+GL+D G  +F S+  +  + P ++HYG ++DL
Sbjct: 406 DLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDL 465

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           LG AG  +EA +I+  + M  D V+W +LL AC+++G++E+AE  ++KL+E+   N G +
Sbjct: 466 LGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSY 525

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSN+YA   RW+DV R+R+ +  + +KKVPG S IE+  V+H+F   DK H + REIY
Sbjct: 526 VLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIY 585

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
             L+E+   ++E G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   T + V 
Sbjct: 586 RMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVV 645

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+CR+CH+  KLISK+Y REI+ RDR RFH F+DG CSC DYW
Sbjct: 646 KNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 196/390 (50%), Gaps = 38/390 (9%)

Query: 44  SKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG 102
           SK++E   +SP  + L YA ++F     P+   +N +LRGLA SS   + +  Y +M+  
Sbjct: 18  SKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSX 77

Query: 103 SHRSDALTCSFALKACARVLALFETLQIHSHVL-------------------RHGFLADA 143
            H  +A T  F LK+CA+     E  QIH+ V+                   R+G L DA
Sbjct: 78  GHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDA 137

Query: 144 ------------LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
                       +  T L+  YA  G++ SA+KVFD +  RD+ SWNA+I G  +     
Sbjct: 138 RKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYE 197

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER-LDMNVVVCNA 250
           EA++LFK M M    +P+E T++  L+AC   G+ + G +IH  + +      ++ + NA
Sbjct: 198 EALELFKEM-MRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNA 256

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
            I +Y+KCG ++ A  +F+ + C K +V+WNT++  +        AL LF++M R+G  P
Sbjct: 257 FIGLYSKCGDVEIASGLFEGLSC-KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 315

Query: 311 DDVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           +DV+ L+ L AC H G +D G  + ++      GV        S++D+  + G ++ A  
Sbjct: 316 NDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQ 375

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           +  S+ M   +  W  ++    ++G    A
Sbjct: 376 VFNSM-MHKSLSSWNAMIFGFAMHGRANAA 404



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 150/301 (49%), Gaps = 17/301 (5%)

Query: 53  SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           S   ++  A  LF  ++      +N ++ G  H +    A+L +++MLR     + +T  
Sbjct: 262 SKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTML 321

Query: 113 FALKACARVLALFETLQIHSHVLRH--GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
             L ACA + A+     IH ++ +   G    + L T+L+D+YAK G+I +A +VF+ M 
Sbjct: 322 SVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMM 381

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            + ++SWNA+I G A    A+ A DLF RM+  G+ +P+++T++G L+AC H G    G 
Sbjct: 382 HKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGI-EPDDITLVGLLSACSHSGLLDLGR 440

Query: 231 KIHEYIREERLDMNVVV----CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
            I + + +   D N+         +ID+    GL  +A E+   +      V W +++ A
Sbjct: 441 HIFKSVTQ---DYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKA 497

Query: 287 FAVHGDGPRALELFEQMGRA--GVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMANCGV 343
             +HG+    LEL E   +    ++P++  SY+        AG  +D  R+   +   G+
Sbjct: 498 CKMHGN----LELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGM 553

Query: 344 K 344
           K
Sbjct: 554 K 554


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/531 (42%), Positives = 321/531 (60%), Gaps = 21/531 (3%)

Query: 56  NELAYAHALFR-QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           N L  AH   R Q   P+ +  +  +R   H  +P                 D  T  F 
Sbjct: 28  NTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQP-----------------DFHTFPFL 70

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L++ A    L     +H+ +LR G   D  + T+L+ +Y+  G +  A+ +F  M  R++
Sbjct: 71  LQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNV 130

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGV--FKPNEVTVLGALAACGHLGAWKEGDKI 232
            SW+ +I G  +     EA+ LF+ M+M GV   +PNE T+ G LAACG LGA + G   
Sbjct: 131 ISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWA 190

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H YI +  + ++VV+  A+IDMYAKCG ++KA  VF N+   K ++ W+ M+   A+HG 
Sbjct: 191 HAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGL 250

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYG 351
               + LF +M   GV+P+ V++LA  CAC H GLV +G      M  +  + P ++HYG
Sbjct: 251 AEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYG 310

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +VDL GRAGR++EA ++VKS+ M  D+++W  LL   +++GD+E  E+A +KL+E+   
Sbjct: 311 CMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPT 370

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           N G +VLLSN+YA   RW+DV  VR  M+   +KKVPG S IEVGGV+H+FF  D SH +
Sbjct: 371 NSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPE 430

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
            R+I+  L+EI+ ++K  GY   T  VL D+ EE KE AL  HSEKLA+A+G + TS  T
Sbjct: 431 TRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGT 490

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            I++ KNLRICRDCH  IK+ISKV++REIIVRD  RFH F  G CSC+DYW
Sbjct: 491 PIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 134/259 (51%), Gaps = 14/259 (5%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM-L 100
           V++ +I  Y+ S L ++A    LF  +   +   ++ ++ G     +   A+  +R+M +
Sbjct: 101 VQTSLISMYSSSGLVDMA--RNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQM 158

Query: 101 RGSH--RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
            G +  R +  T S  L AC R+ AL      H+++ + G   D +LGT L+D+YAK G 
Sbjct: 159 LGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGS 218

Query: 159 IVSAKKVFDEMGV-RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
           +  A  VF  +G  +D+ +W+A+I+GLA   LA E V LF +M  +GV +PN VT L   
Sbjct: 219 VEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGV-RPNAVTFLAVF 277

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVC----NAVIDMYAKCGLLDKAFEVFDNIKC 273
            AC H G   EG    +Y+R    D +++        ++D+Y + G + +A+ V  ++  
Sbjct: 278 CACVHGGLVSEGK---DYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPM 334

Query: 274 RKSLVTWNTMVMAFAVHGD 292
              ++ W  ++    +HGD
Sbjct: 335 EPDVLVWGALLSGSRMHGD 353


>gi|255572347|ref|XP_002527112.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533535|gb|EEF35275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 364

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/327 (64%), Positives = 260/327 (79%), Gaps = 7/327 (2%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           L++LL KC++       H +Q+Q HL TTG FQ K+   RSK++EF+ALS LN L+ A  
Sbjct: 5   LDSLLPKCTTLS-----HAEQIQCHLITTGHFQFKISSSRSKLLEFFALS-LNNLSVAIK 58

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
            F QI  PSTND+NAVLRGL  S  P ++  WY+ M+RGS++ DALTCSF LKACARVLA
Sbjct: 59  AFYQILTPSTNDWNAVLRGLIQSPDPIDSFKWYKTMIRGSYKVDALTCSFVLKACARVLA 118

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
             E+ Q+HSH++R GF+ADALLGTTLLD+YAK G++ SA+K+FDEM V+DIASWNALI+G
Sbjct: 119 FSESTQLHSHIVRKGFVADALLGTTLLDLYAKTGDLDSAQKMFDEMIVKDIASWNALISG 178

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            AQGN  SEA+ LFKRM++ G FKPNE+TVLGAL+AC  LGA+KEG+KIHEYIR ++LDM
Sbjct: 179 FAQGNKPSEALGLFKRMEVLG-FKPNEITVLGALSACSQLGAFKEGEKIHEYIRSQKLDM 237

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           NV VCNA IDMYAKCG  DKA+ VF+++ C KSLVTWNTM+MAFA+HGDG +AL+LF+ M
Sbjct: 238 NVQVCNAAIDMYAKCGFADKAYLVFESMSCGKSLVTWNTMIMAFAMHGDGDKALKLFKYM 297

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDD 330
            + GV PD VSYLA LCACNH+G  DD
Sbjct: 298 HQEGVSPDAVSYLAVLCACNHSGKEDD 324



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 141/275 (51%), Gaps = 9/275 (3%)

Query: 129 QIHSHVLRHGFLADALLGT--TLLDVYA-KVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           QI  H++  G     +  +   LL+ +A  +  +  A K F ++       WNA++ GL 
Sbjct: 20  QIQCHLITTGHFQFKISSSRSKLLEFFALSLNNLSVAIKAFYQILTPSTNDWNAVLRGLI 79

Query: 186 QGNLASEAVDLFKRMK--MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
           Q   + + +D FK  K  + G +K + +T    L AC  + A+ E  ++H +I  +    
Sbjct: 80  Q---SPDPIDSFKWYKTMIRGSYKVDALTCSFVLKACARVLAFSESTQLHSHIVRKGFVA 136

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           + ++   ++D+YAK G LD A ++FD +   K + +WN ++  FA       AL LF++M
Sbjct: 137 DALLGTTLLDLYAKTGDLDSAQKMFDEM-IVKDIASWNALISGFAQGNKPSEALGLFKRM 195

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
              G KP++++ L AL AC+  G   +G ++   + +  +  N++   + +D+  + G  
Sbjct: 196 EVLGFKPNEITVLGALSACSQLGAFKEGEKIHEYIRSQKLDMNVQVCNAAIDMYAKCGFA 255

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +A  + +S+S G  +V W T++ A  ++GD + A
Sbjct: 256 DKAYLVFESMSCGKSLVTWNTMIMAFAMHGDGDKA 290


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/581 (38%), Positives = 355/581 (61%), Gaps = 11/581 (1%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           +++L +C S  A+     +++ AH+  T  ++  ++ +R+++I  Y  +    L  A  +
Sbjct: 14  DSVLTECISQTAIREG--QRVHAHMIKTC-YEPPVY-LRTRLIVLY--NKCRCLGDARRV 67

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
             ++   +   + A++ G +     + A+  + +ML      +  T +  L +C      
Sbjct: 68  LDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGF 127

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               QIHS V++  F +   +G++LLD+YAK G+I  A++VFD +  RD+ S  A+I+G 
Sbjct: 128 QLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGY 187

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           AQ  L  EA+DLF+R++ EG+ + N VT    L A   L A   G ++H ++   +L   
Sbjct: 188 AQLGLDEEALDLFRRLQREGM-RSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFY 246

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           VV+ N++IDMY+KCG L  +  +FD++  R ++++WN M++ ++ HG G  A+ELF+ M 
Sbjct: 247 VVLQNSLIDMYSKCGSLTYSRRIFDSMPER-TVISWNAMLVGYSKHGLGREAVELFKLMK 305

Query: 305 RAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC--GVKPNMKHYGSVVDLLGRAG 361
               VKPD V++LA L  C+H G+ D G+ +F  M N   G +P ++HYG VVDL GRAG
Sbjct: 306 EENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAG 365

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           R++EA + +K +       +W +LLGAC+++ +V + E  +R+L+E+ S N G++V+LSN
Sbjct: 366 RVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSN 425

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           LYA+  RWDDV  VR+ MK + V K PG S+IE+   +H F  SD+SH +  E++ K+ E
Sbjct: 426 LYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRE 485

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           +  KIKE GY    SCVL+D+ +E+KE  L  HSEKLA+AFGLI T   T +++ KNLRI
Sbjct: 486 LSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRI 545

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH+  K +S+VY RE+ +RD+ RFH    G CSC DYW
Sbjct: 546 CVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/515 (40%), Positives = 336/515 (65%), Gaps = 13/515 (2%)

Query: 77  NAVLRGLAHSSKPTN-----AVLWYRQMLRGSHRSDALTCSFALKACARVLALFET-LQI 130
           N ++R  AH++ P +     A  ++  MLRG+   +  T  F LKACA +    +  LQ 
Sbjct: 92  NTLIR--AHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQA 149

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGE--IVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           H+  L+ GF  D  +  TL+ +Y+  G   +  A+ VFD M      +W+A+I G  +G 
Sbjct: 150 HAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGG 209

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
           L+S+AVDLF+ M+  GV + +EVTV+G LAA   LGA +    +  ++  E +  +V +C
Sbjct: 210 LSSDAVDLFREMQANGV-QADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLC 268

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           NA+ID  AKCG +D A  VF+ ++ ++S+V+W +++ A A+ G G  A+ +FE+M  AGV
Sbjct: 269 NALIDTLAKCGDVDGAVAVFEGMQ-QRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGV 327

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
            PDDV+++  L AC+HAG+VD+G   F++M    G++P ++HYG +VD+ GRAG ++ A 
Sbjct: 328 PPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAM 387

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
           + V+++ +  + V+W++L+ AC+ +G +E+ E  +R L+     +  ++++LSN++A  +
Sbjct: 388 EFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQ 447

Query: 428 RWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487
           RW +   +R+ M  R +KKVPG S +E+ G +H+F   D+SH ++++IY  ++E+  +++
Sbjct: 448 RWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELR 507

Query: 488 EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHD 547
             G+ A TS VL D+ EE+KE AL +HSEKLA+AF L+ T   T ++V KNLR+C DCH 
Sbjct: 508 RVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHA 567

Query: 548 VIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            IK IS+VY REI+VRDR RFHRFKDG+CSCKD+W
Sbjct: 568 AIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/525 (41%), Positives = 334/525 (63%), Gaps = 5/525 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH +F +I       +NA + G A +     A+  +++M++ + R D  T    L ACA+
Sbjct: 188 AHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQ 247

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             ++    Q+HS +  HGF  +  +   L+D+Y+K GE+ +A  +F  +  +D+ SWN L
Sbjct: 248 SGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTL 307

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI--RE 238
           I G    NL  EA+ LF+ M   G  KPN+VT+L  L+AC HLGA   G  IH YI  R 
Sbjct: 308 IGGYTHMNLYKEALLLFQDMLRSGE-KPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRL 366

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           + +     +  ++IDMYAKCG ++ A +VFD++   +SL +WN M+  FA+HG    A +
Sbjct: 367 KGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMHGRANAAFD 425

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           +F +M + G++PDD++++  L AC+H+G++D G  +F SM  +  + P ++HYG ++DL 
Sbjct: 426 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLX 485

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           G +G  +EA  ++ ++ M  D V+W +LL AC+++G+VE+ E  ++ L+++   N G +V
Sbjct: 486 GHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYV 545

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YA  ERW++V + R  + ++ +KKVPG S IE+  V+H+F   DK H + REIY 
Sbjct: 546 LLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            L+E+   ++E G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   T + + K
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 665

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+CR+CH+  KLISK+Y REII RDR RFH F+DG CSC DYW
Sbjct: 666 NLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 216/433 (49%), Gaps = 45/433 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSP-LNELAYAHAL 64
           +LL  C +  ++  IH + ++  L  T    SKL       +E   LSP  + L YA ++
Sbjct: 7   SLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKL-------LEXCVLSPHFDGLPYAISV 59

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F  I  P    +N + RG A SS P +A+  Y  M+      ++ T  F LK+CA+  A 
Sbjct: 60  FDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAF 119

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDV-------------------------------Y 153
            E  Q+H  VL+ GF  D  + T+L+ +                               Y
Sbjct: 120 KEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGY 179

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           A  G I SA K+FDE+ V+D+ SWNA I+G A+     EA++LFK+M M+   +P+E T+
Sbjct: 180 ASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKM-MKTNVRPDESTM 238

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           +  L+AC   G+ + G ++H +I +     N+ + NA+ID+Y+KCG L+ A  +F  +  
Sbjct: 239 VTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLS- 297

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG-- 331
            K +++WNT++  +        AL LF+ M R+G KP+DV+ L+ L AC H G +D G  
Sbjct: 298 NKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRW 357

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           + ++      GV        S++D+  + G ++ A  +  S+ +   +  W  ++    +
Sbjct: 358 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAM 416

Query: 392 YGDVEMA-EIASR 403
           +G    A +I SR
Sbjct: 417 HGRANAAFDIFSR 429



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 134/250 (53%), Gaps = 6/250 (2%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +I+ Y  S   EL  A  LF+ ++      +N ++ G  H +    A+L ++ MLR   +
Sbjct: 276 LIDLY--SKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEK 333

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRH--GFLADALLGTTLLDVYAKVGEIVSAK 163
            + +T    L ACA + A+     IH ++ +   G    + L T+L+D+YAK G+I +A+
Sbjct: 334 PNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQ 393

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           +VFD M  R ++SWNA+I G A    A+ A D+F RM+  G+ +P+++T +G L+AC H 
Sbjct: 394 QVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGI-EPDDITFVGLLSACSHS 452

Query: 224 GAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           G    G  I   + R+ +L   +     +ID+    GL  +A ++ + ++     V W +
Sbjct: 453 GMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCS 512

Query: 283 MVMAFAVHGD 292
           ++ A  +HG+
Sbjct: 513 LLKACKMHGN 522


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/641 (38%), Positives = 363/641 (56%), Gaps = 72/641 (11%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           AL  KC S   V     KQ+QA +  T      L  V  K++   A++  + L YA  LF
Sbjct: 10  ALFSKCKSLRTV-----KQIQALIFKTCLNSYPL--VSGKLLLHCAVTLPDSLHYARRLF 62

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS-HRSDALTCSFALKACARVLAL 124
             I  P    +N ++RGL+ S  P+NA+  + +M R S    D+ + +F LKA A   AL
Sbjct: 63  LDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRAL 122

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE---------------- 168
              LQ+H   + +G  +   +GTTL+ +YA+   +V A+KVFDE                
Sbjct: 123 TNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAAC 182

Query: 169 ---------------MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME---------- 203
                          M +R++ SWN ++AG  +      A ++F +M ++          
Sbjct: 183 FRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIV 242

Query: 204 -----GVF---------------KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
                G F               +PNEV++ G L+AC   GA++ G  +H ++ +     
Sbjct: 243 GFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQ 302

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            + V NA+ID Y+KCG LD A  VFDN+  R+S V+W  M+   A+HG G  A+ LF +M
Sbjct: 303 IISVNNALIDTYSKCGNLDMARLVFDNM-LRRSAVSWTAMIAGMAMHGYGEEAIRLFNEM 361

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGR 362
             + +KPD +++++ L AC+HAGLVD G   F+ M N  G++P ++HYG +VDL GRAG+
Sbjct: 362 EESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGK 421

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           LQ+A D V  + +  + ++W+TLLGAC ++G++ +A    R+L E+   N GD VLLSN+
Sbjct: 422 LQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNI 481

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YA   +W DV  +R++M ++ +KK PG+S IEV  +I+ F   +K +    E ++KL EI
Sbjct: 482 YAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREI 541

Query: 483 MFKIK-EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           M +++ E GY      VLHDI  EEKE+++  HSEKLAVAFG+       +I+V KNLRI
Sbjct: 542 MSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRI 601

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CRDCH V+KLISKVY  EI+VRDR RFH F  G+CSC+DYW
Sbjct: 602 CRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/587 (41%), Positives = 347/587 (59%), Gaps = 22/587 (3%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA---YAHA 63
           LL +CS  G      I ++QA L T+G  + +   +   +I  +A S   + A   YAH 
Sbjct: 23  LLSRCS--GGADARPIARIQAALVTSGLLR-RSAELHDALIRAHASSGRPQAALPLYAH- 78

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA-----LKAC 118
           L R    P+ +   ++L+ LA S     AV   R++    H + A+    A       A 
Sbjct: 79  LIRAGLFPTPHTLPSLLKSLALSP----AVPGARRLALAVH-AHAVRLGLAGFLLVNNAL 133

Query: 119 ARVLA-LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
            RV A L   L     +LR     DA    TL+  +A+ G +  A+ +FDEM  R+  SW
Sbjct: 134 IRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSW 193

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           +A++ G  Q     EA+ +F +M+ +GV +P++  ++G LAAC  LGA ++G  +H Y++
Sbjct: 194 SAMVNGYVQAGDGREALGVFSQMQAQGV-RPDDTVLVGVLAACAQLGALEQGKWVHGYLK 252

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
              + M V +  A++DMYAKCG +    EVF+ +K  K+++ W TM+   A+HG G  +L
Sbjct: 253 ANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMK-DKNVLAWTTMIKGLAMHGRGSDSL 311

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDL 356
            LF QM  +GVKPDD++++ ALCAC H GLVD G  LFNSM N  G+KP ++HYG +VDL
Sbjct: 312 TLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDL 371

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L R G L EA D+V+ + M  D ++W  L+  C+ + +VE+AE   +  +E+  +  G +
Sbjct: 372 LARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAY 431

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLL N+Y+A  R      +R  M+ + V+K PG S +E+ GVIH+F   D SH + ++I 
Sbjct: 432 VLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDIL 491

Query: 477 EKLDEIMFKIK-EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
            K  EI  +I+ E GY      VL DI EEE E+AL  HSEKLA+AF LIST +   I++
Sbjct: 492 TKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKLAIAFALISTEDYMPIRI 551

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C+DCH V KLISKVY REIIVRDR RFH FKDG CSCKDYW
Sbjct: 552 VKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCKDYW 598


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/580 (39%), Positives = 349/580 (60%), Gaps = 15/580 (2%)

Query: 7   LLQKCSSNGAV---SHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           LL  C ++ A+     IH +  +A  T+    Q+ L  + S+            +  A  
Sbjct: 334 LLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSR---------CGSIKDARL 384

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++       + A++ GLA S     A+  Y++M +     + +T +  L AC+   A
Sbjct: 385 VFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAA 444

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L    +IH  V+  G   DA +G TL+++Y+  G +  A++VFD M  RDI ++NA+I G
Sbjct: 445 LEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGG 504

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            A  NL  EA+ LF R++ EG  KP++VT +  L AC + G+ +   +IH  +R+     
Sbjct: 505 YAAHNLGKEALKLFDRLQEEG-LKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFS 563

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           +  V NA++  YAKCG    A  VF+ +  ++++++WN ++   A HG G  AL+LFE+M
Sbjct: 564 DTSVGNALVSTYAKCGSFSDASIVFEKM-TKRNVISWNAIIGGSAQHGRGQDALQLFERM 622

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGR 362
              GVKPD V++++ L AC+HAGL+++G R F SM+ +  + P ++HYG +VDLLGRAG+
Sbjct: 623 KMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQ 682

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L EA  ++K++    +  +W  LLGAC+++G+V +AE A+   +++  +N   +V LS++
Sbjct: 683 LDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHM 742

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YAA   WD   ++RK M+ R V K PG S+I+VG  +H F   D+SH +  +IY +LD +
Sbjct: 743 YAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRL 802

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
              +K  GY   T  V+HD+ E EKENA+C+HSE+LA+A+GLIST   T I +FKNLR+C
Sbjct: 803 THAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVC 862

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH   K ISK+ +REII RD  RFH FKDG CSC DYW
Sbjct: 863 PDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 178/355 (50%), Gaps = 36/355 (10%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++ GLA       A   Y QM R     + +T    L AC    AL    +IHS V 
Sbjct: 296 WNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVA 355

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + GF +D  +   L+ +Y++ G I  A+ VFD+M  +D+ SW A+I GLA+    +EA+ 
Sbjct: 356 KAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALT 415

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +++ M+  GV +PN VT    L AC    A + G +IH+ + E  L  +  V N +++MY
Sbjct: 416 VYQEMQQAGV-EPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMY 474

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           + CG +  A +VFD +  ++ +V +N M+  +A H  G  AL+LF+++   G+KPD V+Y
Sbjct: 475 SMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY 533

Query: 316 LAALCACNHAGLVD-------------------DGVRLFNSMANCG------------VK 344
           +  L AC ++G ++                    G  L ++ A CG             K
Sbjct: 534 INMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTK 593

Query: 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSM---GTDMVLWQTLLGACQLYGDVE 396
            N+  + +++    + GR Q+A  + + + M     D+V + +LL AC   G +E
Sbjct: 594 RNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLE 648



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 195/388 (50%), Gaps = 19/388 (4%)

Query: 6   ALLQKCSSNGAVS---HIHIKQLQAHLTTTGQFQSKLFPVRSK--IIEFYALSPLNELAY 60
           + L  C S GA+     IH + +QA L         LF V+    I+  YA      +  
Sbjct: 131 SFLSSCKSPGALEWGREIHFQAMQAGL---------LFDVKVANCILNMYA--KCGSIEE 179

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++   S   +   + G A   +   A   +++M +     + +T    L A + 
Sbjct: 180 AREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSS 239

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             AL     +HS +L  G  +D  +GT L+ +YAK G     ++VF+++  RD+ +WN +
Sbjct: 240 PAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTM 299

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I GLA+G    EA +++ +M+ EGV  PN++T +  L AC +  A   G +IH  + +  
Sbjct: 300 IGGLAEGGYWEEASEVYNQMQREGVM-PNKITYVILLNACVNSAALHWGKEIHSRVAKAG 358

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              ++ V NA+I MY++CG +  A  VFD +  RK +++W  M+   A  G G  AL ++
Sbjct: 359 FTSDIGVQNALISMYSRCGSIKDARLVFDKM-VRKDVISWTAMIGGLAKSGFGAEALTVY 417

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
           ++M +AGV+P+ V+Y + L AC+    ++ G R+   +   G+  +     ++V++    
Sbjct: 418 QEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMC 477

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           G +++A  +   + +  D+V +  ++G 
Sbjct: 478 GSVKDARQVFDRM-IQRDIVAYNAMIGG 504



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 155/317 (48%), Gaps = 3/317 (0%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIH 131
           + + +NA++ G         A+   RQM +     D  T    L +C    AL    +IH
Sbjct: 90  TVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIH 149

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
              ++ G L D  +   +L++YAK G I  A++VFD+M  + + SW   I G A    + 
Sbjct: 150 FQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSE 209

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
            A ++F++M+ EGV  PN +T +  L A     A K G  +H  I     + +  V  A+
Sbjct: 210 TAFEIFQKMEQEGVV-PNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTAL 268

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           + MYAKCG      +VF+ +   + L+ WNTM+   A  G    A E++ QM R GV P+
Sbjct: 269 VKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPN 327

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
            ++Y+  L AC ++  +  G  + + +A  G   ++    +++ +  R G +++A  +V 
Sbjct: 328 KITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDA-RLVF 386

Query: 372 SVSMGTDMVLWQTLLGA 388
              +  D++ W  ++G 
Sbjct: 387 DKMVRKDVISWTAMIGG 403



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 149/276 (53%), Gaps = 5/276 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--R 172
           LK C  V  L    Q+H H+++H  + D      L+++Y + G I  A++V+ ++    R
Sbjct: 30  LKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMER 89

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
            + SWNA++ G  Q     +A+ L ++M+  G   P+  T++  L++C   GA + G +I
Sbjct: 90  TVHSWNAMVVGYIQYGYIEKALKLLRQMQQHG-LAPDRTTIMSFLSSCKSPGALEWGREI 148

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H    +  L  +V V N +++MYAKCG +++A EVFD ++ +KS+V+W   +  +A  G 
Sbjct: 149 HFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKME-KKSVVSWTITIGGYADCGR 207

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
              A E+F++M + GV P+ ++Y++ L A +    +  G  + + + N G + +     +
Sbjct: 208 SETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTA 267

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +V +  + G  ++ C  V    +  D++ W T++G 
Sbjct: 268 LVKMYAKCGSYKD-CRQVFEKLVNRDLIAWNTMIGG 302



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 140/291 (48%), Gaps = 13/291 (4%)

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           AVD+ + ++ +G  + N    +  L  C  +     G ++H++I + R   +    NA+I
Sbjct: 7   AVDVVQYLQQQGA-QVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALI 65

Query: 253 DMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           +MY +CG +++A +V+  +    +++ +WN MV+ +  +G   +AL+L  QM + G+ PD
Sbjct: 66  NMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPD 125

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
             + ++ L +C   G ++ G  +       G+  ++K    ++++  + G ++EA ++  
Sbjct: 126 RTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFD 185

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVEMA-EIASRKLVEMGSNNCGDFVLLSNLYA--AYER 428
            +   + +V W   +G     G  E A EI  +   E    N   ++ + N ++  A  +
Sbjct: 186 KMEKKS-VVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALK 244

Query: 429 WDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           W       KA+ +R +      S   VG  + K +    S+   R+++EKL
Sbjct: 245 WG------KAVHSR-ILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL 288


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/602 (38%), Positives = 368/602 (61%), Gaps = 41/602 (6%)

Query: 18  SHI-HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF 76
           +HI  +KQ+ AH+   G  Q     V +K++       +    Y   +F+Q+  P+   +
Sbjct: 50  THINQVKQVHAHIFRKGLEQCCF--VLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLW 107

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH-VL 135
            A++RG A       +VL Y  M R      + T +  LKAC+  L +    Q+H+  +L
Sbjct: 108 TALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTIL 167

Query: 136 RHGFLADALLGTTLLDVY-------------------------------AKVGEIVSAKK 164
             GF +D  +G TL+D+Y                               AKVG + +A +
Sbjct: 168 IGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASE 227

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           +FD + ++D+ +W A++ G AQ     EA+++F+RM+  GV K +EVT++G ++AC  LG
Sbjct: 228 LFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGV-KTDEVTLVGVISACAQLG 286

Query: 225 AWKEGDKIHEYIREERL--DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           A K  + + +   +       NVVV +A+IDMYAKCG ++ A++VF+ ++  +++ ++++
Sbjct: 287 AAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERME-ERNVYSYSS 345

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC- 341
           M++ FA+HG    A+ELF++M +  +KP+ V+++  L AC+HAG+V+ G +LF  M  C 
Sbjct: 346 MIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECH 405

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIA 401
           GV P+  HY  +VDLLGRAGRL+EA ++VK + M     +W  LLGAC+++G+ +MA+IA
Sbjct: 406 GVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIA 465

Query: 402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE-VGGVIH 460
           +  L E+  N  G+++LLSN+YA+  RWDDV +VRK M+ + +KK PG S++E   G+IH
Sbjct: 466 ASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIH 525

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
           +FF  D SH K REI + L++++ ++K  GY    S V +DI +EEK+  L  HSEKLA+
Sbjct: 526 EFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLAL 585

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AFGL++T+   +I++ KNLRIC DCH V+   S++  REI+VRD +RFH F+DG CSC +
Sbjct: 586 AFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGN 645

Query: 581 YW 582
           +W
Sbjct: 646 FW 647


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/515 (40%), Positives = 336/515 (65%), Gaps = 13/515 (2%)

Query: 77  NAVLRGLAHSSKPTN-----AVLWYRQMLRGSHRSDALTCSFALKACARVLALFET-LQI 130
           N ++R  AH++ P +     A  ++  MLRG+   +  T  F LKACA +    +  LQ 
Sbjct: 92  NTLIR--AHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQA 149

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGE--IVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           H+  L+ GF  D  +  TL+ +Y+  G   +  A+ VFD M      +W+A+I G  +G 
Sbjct: 150 HAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGG 209

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
           L+S+AV+LF+ M+  GV + +EVTV+G LAA   LGA +    +  ++  E +  +V +C
Sbjct: 210 LSSDAVELFREMQANGV-QADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLC 268

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           NA+ID  AKCG +D A  VF+ ++ ++S+V+W +++ A A+ G G  A+ +FE+M  AGV
Sbjct: 269 NALIDTLAKCGDVDGAVAVFEGMQ-QRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGV 327

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
            PDDV+++  L AC+HAG+VD+G   F++M    G++P ++HYG +VD+ GRAG ++ A 
Sbjct: 328 PPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAM 387

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
           + V+++ +  + V+W++L+ AC+ +G +E+ E  +R L+     +  ++++LSN++A  +
Sbjct: 388 EFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQ 447

Query: 428 RWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487
           RW +   +R+ M  R +KKVPG S +E+ G +H+F   D+SH ++++IY  ++E+  +++
Sbjct: 448 RWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELR 507

Query: 488 EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHD 547
             G+ A TS VL D+ EE+KE AL +HSEKLA+AF L+ T   T ++V KNLR+C DCH 
Sbjct: 508 RVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHA 567

Query: 548 VIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            IK IS+VY REI+VRDR RFHRFKDG+CSCKD+W
Sbjct: 568 AIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/574 (39%), Positives = 344/574 (59%), Gaps = 10/574 (1%)

Query: 16  AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTN 74
           +   +H++Q+ A L  T   ++    V    +   ALS +  ++ Y+  +F Q   P+ +
Sbjct: 21  STGKLHLRQIHALLLRTSLIRNS--DVFHHFLSRLALSLIPRDINYSCRVFSQRLNPTLS 78

Query: 75  DFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSH 133
             N ++R  + S  P      +R + R S   ++ L+ SFALK C +   L   LQIH  
Sbjct: 79  HCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGK 138

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           +   GFL+D+LL TTL+D+Y+       A KVFDE+  RD  SWN L +   +     + 
Sbjct: 139 IFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDV 198

Query: 194 VDLFKRMK--MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           + LF +MK  ++G  KP+ VT L AL AC +LGA   G ++H++I E  L   + + N +
Sbjct: 199 LVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTL 258

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           + MY++CG +DKA++VF  ++  +++V+W  ++   A++G G  A+E F +M + G+ P+
Sbjct: 259 VSMYSRCGSMDKAYQVFYGMR-ERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPE 317

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSM--ANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           + +    L AC+H+GLV +G+  F+ M      +KPN+ HYG VVDLLGRA  L +A  +
Sbjct: 318 EQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSL 377

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW 429
           +KS+ M  D  +W+TLLGAC+++GDVE+ E     L+E+ +   GD+VLL N Y+   +W
Sbjct: 378 IKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKW 437

Query: 430 DDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEY 489
           + V  +R  MK + +   PG S IE+ G +H+F   D SH +  EIY+ L EI  ++K  
Sbjct: 438 EKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIA 497

Query: 490 GYAAGTSCVLHDI-GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDV 548
           GY A  +  LH++  EEEK  AL YHSEKLA+AFG++ T   T+I+V KNLR C DCH+ 
Sbjct: 498 GYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNF 557

Query: 549 IKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            K +S VY+R +IVRDR RFH FK G+CSC D+W
Sbjct: 558 AKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 316/523 (60%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF  I  P    +NA++ G + + +   AV ++R++L    R  + T    +   + 
Sbjct: 258 ARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSP 317

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              L     I    ++ G +    + T L  +Y+++ EI  A+++FDE   + +A+WNA+
Sbjct: 318 FGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAM 377

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I+G AQ  L   A+ LF+ M M   F PN VT+   L+AC  LGA   G  +H+ I+ + 
Sbjct: 378 ISGYAQSGLTEMAISLFQEM-MTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKN 436

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L+ N+ V  A+IDMYAKCG + +A ++FD +   K+ VTWNTM+  + +HG G  AL+LF
Sbjct: 437 LEQNIYVSTALIDMYAKCGNISEASQLFD-LTSEKNTVTWNTMIFGYGLHGYGDEALKLF 495

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGR 359
            +M   G +P  V++L+ L AC+HAGLV +G  +F++M N   ++P  +HY  +VD+LGR
Sbjct: 496 NEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGR 555

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG+L++A + ++ + +     +W TLLGAC ++ D  +A +AS +L E+   N G +VLL
Sbjct: 556 AGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLL 615

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+Y+    +     VR+A+K R++ K PG + IEV G  H F   D+SH +   IY KL
Sbjct: 616 SNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKL 675

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +E+  K++E GY + T   LHD+ EEEKE     HSEKLA+AFGLI+T   T I++ KNL
Sbjct: 676 EELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIRIIKNL 735

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH   K ISK+  R I+VRD  RFH FKDG CSC DYW
Sbjct: 736 RVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 183/400 (45%), Gaps = 8/400 (2%)

Query: 25  LQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLA 84
           L AH    G F S LF V S +++ Y     + +AYA  +F ++    T  +N ++ GL 
Sbjct: 125 LHAHAVVDG-FDSNLF-VASALVDLYC--KFSRVAYARKVFDKMPDRDTVLWNTMITGLV 180

Query: 85  HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADAL 144
            +    ++V  ++ M+    R D+ T +  L A A +  +   + I    L+ GF  D  
Sbjct: 181 RNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDY 240

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           + T L+ V++K  ++ +A+ +F  +   D+ S+NALI+G +       AV  F+ + + G
Sbjct: 241 VLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSG 300

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
             + +  T++G +      G       I  +  +    +   V  A+  +Y++   +D A
Sbjct: 301 Q-RVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLA 359

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
            ++FD     K++  WN M+  +A  G    A+ LF++M      P+ V+  + L AC  
Sbjct: 360 RQLFDE-SSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQ 418

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
            G +  G  +   + +  ++ N+    +++D+  + G + EA  +    S   + V W T
Sbjct: 419 LGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTS-EKNTVTWNT 477

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           ++    L+G  + A     +++ +G         LS LYA
Sbjct: 478 MIFGYGLHGYGDEALKLFNEMLHLGFQP-SSVTFLSVLYA 516



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 147/312 (47%), Gaps = 28/312 (8%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQL----QAHLTTTGQFQSKLFPVRSKIIEFYALSPLNEL 58
            L AL+ K  +   ++  H + +    Q  L T  +   KLF V +              
Sbjct: 10  TLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGAT------------- 56

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFALKA 117
            +A ALF  +  P    FN +++G + S    +++ +Y  +L+ +  S D  T +FA+ A
Sbjct: 57  RHARALFFSVPKPDIFLFNVLIKGFSFSPD-ASSISFYTHLLKNTTLSPDNFTYAFAISA 115

Query: 118 CARVLALFETLQ--IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
                   + L   +H+H +  GF ++  + + L+D+Y K   +  A+KVFD+M  RD  
Sbjct: 116 SPD-----DNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTV 170

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
            WN +I GL +     ++V +FK M  +GV + +  TV   L A   +   K G  I   
Sbjct: 171 LWNTMITGLVRNCCYDDSVQVFKDMVAQGV-RLDSTTVATVLPAVAEMQEVKVGMGIQCL 229

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
             +     +  V   +I +++KC  +D A  +F  I+ +  LV++N ++  F+ +G+   
Sbjct: 230 ALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIR-KPDLVSYNALISGFSCNGETEC 288

Query: 296 ALELFEQMGRAG 307
           A++ F ++  +G
Sbjct: 289 AVKYFRELLVSG 300


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/559 (38%), Positives = 337/559 (60%), Gaps = 6/559 (1%)

Query: 25  LQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLA 84
           +   +  TG F S LF V + +++ YA     E+  AH +F ++       + A++    
Sbjct: 154 VHGQVVRTG-FGSDLF-VEAALVDMYA--KCGEIGDAHEVFDRMLIRDVVCWTAMITLYE 209

Query: 85  HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADAL 144
            + +P  A++ +R+M       D +T      A  ++      + +H + + +GF+ D  
Sbjct: 210 QAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVS 269

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           +G +++ +YAK G +  A+ VFD M  R+  SWN++++G  Q    ++A+ LF +M+   
Sbjct: 270 VGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASE 329

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
              PN VT L  ++AC +LG+   G K+H ++   ++D++  + NA++DMY KCG LD A
Sbjct: 330 C-DPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTA 388

Query: 265 FEVFDNIKC-RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
            E+F+N +   + + +WN ++  + VHG G  ALELF +M   GV+P+D+++ + L AC+
Sbjct: 389 VEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACS 448

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
           HAGL+D+G + F  M    V+P MKHY  +VD+LGRAG L EA  ++K +       +W 
Sbjct: 449 HAGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWG 508

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443
            LL AC+++G+ E+ EIA+  L ++   + G +VL+SN+YAA  +W +V  VR+ MK+R 
Sbjct: 509 ALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRG 568

Query: 444 VKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIG 503
           +KK   FS IE G  +H F T+D+S   +RE+Y K++ +  ++K  GY    SCVLHD+ 
Sbjct: 569 LKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVE 628

Query: 504 EEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
            E+KE+ L YHSEKLAVAFG++   +   IQV KNLR+C DCH   K IS +Y R+IIVR
Sbjct: 629 PEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVR 688

Query: 564 DRVRFHRFKDGACSCKDYW 582
           D  RFH F+ G CSC DYW
Sbjct: 689 DGNRFHHFQGGRCSCGDYW 707



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 200/404 (49%), Gaps = 6/404 (1%)

Query: 7   LLQKCSSNGAVSHIHIK-QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           LLQ C+S   +  IH     +  L  T  F ++L  + SK+ + ++   L +  +     
Sbjct: 31  LLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHH-HHH 89

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
               AP++   N +LR  A++ +   A+  Y  M R     +  T  F LK CA  L   
Sbjct: 90  GHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV 149

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
               +H  V+R GF +D  +   L+D+YAK GEI  A +VFD M +RD+  W A+I    
Sbjct: 150 FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYE 209

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q     +A+ LF++M+ EG F  +E+T +   +A G LG  +    +H Y        +V
Sbjct: 210 QAERPLKALMLFRKMQEEG-FLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDV 268

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V N+++ MYAKCG +++A  VFD ++ R   ++WN+M+  +  +G    AL LF QM  
Sbjct: 269 SVGNSIVGMYAKCGNVERARLVFDRMEERNG-ISWNSMLSGYTQNGRPTDALSLFNQMQA 327

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           +   P+ V+ L  + AC++ G    G +L N + +  +  +     +++D+  + G L  
Sbjct: 328 SECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDT 387

Query: 366 ACDIVKSVSMGT-DMVLWQTLLGACQLYGD-VEMAEIASRKLVE 407
           A ++  +  +G  D+  W  L+    ++G   E  E+ SR  VE
Sbjct: 388 AVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVE 431


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/581 (38%), Positives = 355/581 (61%), Gaps = 11/581 (1%)

Query: 5    NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
            +++L +C S  A+     +++ AH+  T  ++  ++ +R+++I  Y  +    L  A  +
Sbjct: 481  DSVLTECISQTAIREG--QRVHAHMIKTC-YEPPVY-LRTRLIVLY--NKCRCLGDARRV 534

Query: 65   FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
              ++   +   + A++ G +     + A+  + +ML      +  T +  L +C      
Sbjct: 535  LDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGF 594

Query: 125  FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
                QIHS V++  F +   +G++LLD+YAK G+I  A++VFD +  RD+ S  A+I+G 
Sbjct: 595  QLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGY 654

Query: 185  AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
            AQ  L  EA+DLF+R++ EG+ + N VT    L A   L A   G ++H ++   +L   
Sbjct: 655  AQLGLDEEALDLFRRLQREGM-RSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFY 713

Query: 245  VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
            VV+ N++IDMY+KCG L  +  +FD++   +++++WN M++ ++ HG G  A+ELF+ M 
Sbjct: 714  VVLQNSLIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAMLVGYSKHGLGREAVELFKLMK 772

Query: 305  RAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC--GVKPNMKHYGSVVDLLGRAG 361
                VKPD V++LA L  C+H G+ D G+ +F  M N   G +P ++HYG VVDL GRAG
Sbjct: 773  EENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAG 832

Query: 362  RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            R++EA + +K +       +W +LLGAC+++ +V + E  +R+L+E+ S N G++V+LSN
Sbjct: 833  RVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSN 892

Query: 422  LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
            LYA+  RWDDV  VR+ MK + V K PG S+IE+   +H F  SD+SH +  E++ K+ E
Sbjct: 893  LYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRE 952

Query: 482  IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
            +  KIKE GY    SCVL+D+ +E+KE  L  HSEKLA+AFGLI T   T +++ KNLRI
Sbjct: 953  LSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRI 1012

Query: 542  CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            C DCH+  K +S+VY RE+ +RD+ RFH    G CSC DYW
Sbjct: 1013 CVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/563 (39%), Positives = 346/563 (61%), Gaps = 7/563 (1%)

Query: 21   HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
             ++Q+    +  G  Q+ +  V +K++ FY  S    L  A+ LF  +    +  ++ ++
Sbjct: 753  QVRQVHXQASVHGMLQNLI--VANKLVXFY--SYYRALDDAYGLFDGMCVRDSVSWSVMV 808

Query: 81   RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
             G A      N    +R+++R   R D  T  F ++AC  +  L     IH  V + G  
Sbjct: 809  GGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLD 868

Query: 141  ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
             D  +   L+D+Y K  EI  A+ +FD+M  RD+ +W  +I G A+   A+E++ LF +M
Sbjct: 869  LDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKM 928

Query: 201  KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
            + EGV  P++V ++  + AC  LGA  +   I +YI+ ++  ++V++  A+IDM+AKCG 
Sbjct: 929  REEGVV-PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGC 987

Query: 261  LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
            ++ A E+FD ++  K++++W+ M+ A+  HG G +AL+LF  M R+G+ P+ ++ ++ L 
Sbjct: 988  VESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLY 1046

Query: 321  ACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            AC+HAGLV++G+R F+ M  +  V+ ++KHY  VVDLLGRAGRL EA  ++ S++   D 
Sbjct: 1047 ACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDE 1106

Query: 380  VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
             LW   LGAC+ + DV +AE A+  L+E+   N G ++LLSN+YA   RW+DV ++R  M
Sbjct: 1107 GLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLM 1166

Query: 440  KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
              R +KK+PG+++IEV    H+F   D +H + +EIYE L  +  K++  GY   T+ VL
Sbjct: 1167 SQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVL 1226

Query: 500  HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
            HD+ EE K   L  HSEKLA+AFGLI+T E T I++ KNLR+C DCH   KL+S +  R 
Sbjct: 1227 HDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRV 1286

Query: 560  IIVRDRVRFHRFKDGACSCKDYW 582
            IIVRD  RFH FK+GACSC DYW
Sbjct: 1287 IIVRDANRFHHFKEGACSCGDYW 1309



 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/521 (38%), Positives = 319/521 (61%), Gaps = 7/521 (1%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
            ++Q+ A  +  G  ++ +  V +K+I FY  S    L  A+ LF  +    +  ++ ++
Sbjct: 77  QVRQVHAQASVHGMLENIV--VANKLIYFY--SYYRALDDAYGLFDGMCVRDSVSWSVMV 132

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
            G A      N    +R+++R   R D  T  F ++AC  +  L     IH  V + G  
Sbjct: 133 GGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLD 192

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
            D  +   L+D+Y K  EI  A+ +FD+M  RD+ +W  +I G A+   A+E++ LF++M
Sbjct: 193 LDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM 252

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           + EGV  P++V ++  + AC  LGA  +   I +YI+ ++  ++V++  A+IDMYAKCG 
Sbjct: 253 REEGVV-PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGC 311

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           ++ A E+FD ++  K++++W+ M+ A+  HG G +AL+LF  M  +G+ PD ++  + L 
Sbjct: 312 VESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLY 370

Query: 321 ACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC+HAGLV++G+R F+SM  +  V+ ++KHY  VVDLLGRAGRL EA  ++KS+++  D 
Sbjct: 371 ACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDE 430

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
            LW   LGAC+ + DV +AE A+  L+E+ S N G +VLLSN+YA   RW+DV ++R  M
Sbjct: 431 GLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLM 490

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
             R +KK PG+++IEV    H+F   D +H + +EIYE L  +  K++  GY   T+ VL
Sbjct: 491 SQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVL 550

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           HD+ EE K   L  HSEKLA+AFGLI+T E T I++ KNLR
Sbjct: 551 HDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 144/327 (44%), Gaps = 36/327 (11%)

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
           H    L   F + A      L +  Q+H+    HG L + ++   L+  Y+    +  A 
Sbjct: 55  HFLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAY 114

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
            +FD M VRD  SW+ ++ G A+          F+ +   G  +P+  T+   + AC  L
Sbjct: 115 GLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGA-RPDNYTLPFVIRACRDL 173

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
              + G  IH  + +  LD++  VC A++DMY KC  ++ A  +FD ++  + LVTW  M
Sbjct: 174 KNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQ-ERDLVTWTVM 232

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG------LVDD------- 330
           +  +A  G    +L LFE+M   GV PD V+ +  + AC   G      ++DD       
Sbjct: 233 IGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKF 292

Query: 331 ------GVRLFNSMANCGV------------KPNMKHYGSVVDLLGRAGRLQEACDIVK- 371
                 G  + +  A CG             + N+  + +++   G  G+ ++A D+   
Sbjct: 293 QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPM 352

Query: 372 --SVSMGTDMVLWQTLLGACQLYGDVE 396
             S  M  D +   +LL AC   G VE
Sbjct: 353 MLSSGMLPDKITLASLLYACSHAGLVE 379



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 130/270 (48%), Gaps = 3/270 (1%)

Query: 124  LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
            L +  Q+H     HG L + ++   L+  Y+    +  A  +FD M VRD  SW+ ++ G
Sbjct: 751  LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 184  LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             A+          F+ +   G  +P+  T+   + AC  L   + G  IH  + +  LD+
Sbjct: 811  FAKVGDYMNCFGTFRELIRCGA-RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 869

Query: 244  NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            +  VC A++DMY KC  ++ A  +FD +   + LVTW  M+  +A  G+   +L LF++M
Sbjct: 870  DHFVCAALVDMYGKCREIEDARFLFDKMX-ERDLVTWTVMIGGYAECGNANESLVLFDKM 928

Query: 304  GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
               GV PD V+ +  + AC   G +     + + +     + ++    +++D+  + G +
Sbjct: 929  REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV 988

Query: 364  QEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            + A +I   +    +++ W  ++ A   +G
Sbjct: 989  ESAREIFDRME-EKNVISWSAMIAAYGYHG 1017


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/480 (42%), Positives = 325/480 (67%), Gaps = 4/480 (0%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           R D +T    + ACA++  L     +HS+    G   +  +   +LD+Y K  +I SA++
Sbjct: 8   RPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQE 67

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VF+ +  +D+ SW ++++GLA+     E++ LF++M++  + +P+E+T++G L+AC   G
Sbjct: 68  VFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKI-EPDEITLVGVLSACAQTG 126

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A  +G  IH  I +  ++ ++V+  A++DMYAKCG +D A +VF  ++ R ++ TWN M+
Sbjct: 127 ALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNAMI 185

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGV 343
              A+HG G  A+ LF+QM    + PDDV+++A LCAC+HAGLVD+G+ +F +M N   +
Sbjct: 186 GGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQI 245

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
           +P M+HYG VVDLL RA ++ +A   ++++ +  + VLW TLLGAC+  G  ++AE   R
Sbjct: 246 EPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXR 305

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
           +++E+  ++CG +V+LSNLYA   +WD   ++RK MKN+ ++K PG S+IE+ G+IH+F 
Sbjct: 306 RVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFV 365

Query: 464 TSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
             D+SH++  +IY  ++E+  ++  + G+  GT+ VL DI EEEKE++L  HSEKLA+A 
Sbjct: 366 AGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIAL 425

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           GLIST   + I++ KNLR+C DCH  +K+ SKVYNREI+ RDR RFH FK+G+CSC D+W
Sbjct: 426 GLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 150/310 (48%), Gaps = 13/310 (4%)

Query: 40  FPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM 99
             V + I++ Y     +++  A  +F +I       + ++L GLA S     ++  +R+M
Sbjct: 46  LSVNNAILDMYC--KCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKM 103

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
                  D +T    L ACA+  AL +   IH  + +     D +L T L+D+YAK G I
Sbjct: 104 QLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSI 163

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
             A +VF  M VR++ +WNA+I GLA      +A+ LF +M+ + +  P++VT +  L A
Sbjct: 164 DLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLM-PDDVTFIALLCA 222

Query: 220 CGHLGAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           C H G   EG  + + ++ + +++  +     V+D+  +   +D A    +N+  + + V
Sbjct: 223 CSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSV 282

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGV--KPDDVSYLAALCACNHAGLV--DDGVRL 334
            W T++ A    G      +L E++ R  +  +PD       L    +AG+   D  ++L
Sbjct: 283 LWATLLGACRSGGH----FDLAEKIXRRVIELEPDSCGRYVMLSNL-YAGVSQWDHALKL 337

Query: 335 FNSMANCGVK 344
              M N G++
Sbjct: 338 RKQMKNKGIE 347


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/519 (42%), Positives = 329/519 (63%), Gaps = 5/519 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F +I       +NA++ G A   +   A+  + +M++   + D  T +  L  C  
Sbjct: 163 AQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTH 222

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              +    QIHS +  HGF ++  L   L+D+Y+K GE+  A  +F+ +  +D+ SWN L
Sbjct: 223 SGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTL 282

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G A  N   EA+ +F+ M   G   PN+VT+L  L AC HLGA   G  IH YI ++ 
Sbjct: 283 IGGYAYINHHKEALLVFQEMLKLGE-TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKL 341

Query: 241 --LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             +  N  +  ++IDMYAKCG ++ A +VFD I   KSL + N M+  FA+HG    A +
Sbjct: 342 KGIITNTSLQTSLIDMYAKCGNIEAANQVFDTI-LNKSLSSCNAMIFGFAMHGRADAAFD 400

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           L  +M + G++PDD++++  L AC+HAGL D G ++F SM  +  ++P ++HYG ++DLL
Sbjct: 401 LLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLL 460

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           GR+G  +EA +++ S++M  D V+W +LL AC+++ ++E+ E+ ++KL+++   N G +V
Sbjct: 461 GRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYV 520

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YA   RWDDV RVR  + ++ +KKVPG S IE+  ++H+F   DK H + +EIY+
Sbjct: 521 LLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYK 580

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            L+EI   + E G+ + TS VL ++ EE KE AL YHSEKLA+AFGLIST   T +++ K
Sbjct: 581 MLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVK 640

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
           NLR+CR+CH+  KLISK+Y REII RDR RFH FKDG C
Sbjct: 641 NLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 197/364 (54%), Gaps = 36/364 (9%)

Query: 44  SKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG 102
           SK+++F  L+P  + L YA ++F+ I  P+   +N ++RG A SS P +A+  Y  M+  
Sbjct: 13  SKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISL 72

Query: 103 SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG----- 157
               ++ T  F  K+CA+  A  E  QIH+ +L++G   D  + T+L+ +YA+ G     
Sbjct: 73  GLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDA 132

Query: 158 ----------EIVS----------------AKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
                     ++VS                A+K+FDE+ ++D+ SWNA+I+G A+     
Sbjct: 133 HKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYK 192

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           EA++LF  M M+   KP+E T+   L+ C H G  + G +IH +I       N+ + NA+
Sbjct: 193 EALELFNEM-MKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNAL 251

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           ID+Y+KCG +++A  +F+ ++  K +++WNT++  +A       AL +F++M + G  P+
Sbjct: 252 IDLYSKCGEMERAHGLFEGLQ-YKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPN 310

Query: 312 DVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           DV+ L+ L AC H G +D G  + ++      G+  N     S++D+  + G ++ A  +
Sbjct: 311 DVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQV 370

Query: 370 VKSV 373
             ++
Sbjct: 371 FDTI 374



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 161/311 (51%), Gaps = 14/311 (4%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           + +  +L  C+ +G V     +Q+ + +   G F S L  V + +I+ Y  S   E+  A
Sbjct: 211 STMATVLSTCTHSGNVELG--RQIHSWIDNHG-FGSNLKLVNA-LIDLY--SKCGEMERA 264

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
           H LF  +       +N ++ G A+ +    A+L +++ML+     + +T    L ACA +
Sbjct: 265 HGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHL 324

Query: 122 LALFETLQIHSHVLR--HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            A+     IH ++ +   G + +  L T+L+D+YAK G I +A +VFD +  + ++S NA
Sbjct: 325 GAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNA 384

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR-E 238
           +I G A    A  A DL  RMK +G+ +P+++T +G L+AC H G    G KI + +  +
Sbjct: 385 MIFGFAMHGRADAAFDLLSRMKKDGI-EPDDITFVGLLSACSHAGLSDLGRKIFKSMTLD 443

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            R++  +     +ID+  + GL  +A E+ +++      V W +++ A  +H    + LE
Sbjct: 444 YRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIH----KNLE 499

Query: 299 LFEQMGRAGVK 309
           L E + +  +K
Sbjct: 500 LGELIAQKLMK 510



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 83/185 (44%), Gaps = 5/185 (2%)

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L  A  VF +I+    L +WNTM+   A+  D   AL L+  M   G+ P+  ++     
Sbjct: 28  LPYAISVFKSIQEPNQL-SWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFK 86

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           +C  +    +G ++   +   G+  ++  + S++ +  + G +++A  +  + S   D+V
Sbjct: 87  SCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSH-RDVV 145

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
            +  ++      G+++ A+   +   E+   +   +  + + YA   R+ +   +   M 
Sbjct: 146 SYTAMITGYASRGNMDKAQ---KMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMM 202

Query: 441 NRDVK 445
             DVK
Sbjct: 203 KMDVK 207


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/532 (41%), Positives = 338/532 (63%), Gaps = 13/532 (2%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           +A A  +F +I       +NA++ G A +     A+  +++M++ + R D  T    + A
Sbjct: 170 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSA 229

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA+  ++    Q+HS +  HGF ++  +   L+D+Y K GE+ +A  +F+ +  +D+ SW
Sbjct: 230 CAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISW 289

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N LI G    NL  EA+ LF+ M   G   PN+VT+L  L AC HLGA + G  IH YI 
Sbjct: 290 NTLIGGYTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSILPACAHLGAIEIGRWIHVYIN 348

Query: 238 EERLDMNVVVCNA------VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           + RL     V NA      +IDMYAKCG ++ A +VFD+I   +SL +WN M+  FA+HG
Sbjct: 349 K-RLKG---VANASSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHG 403

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHY 350
               A ++F +M +  ++PDD++++  L AC+H+G++D G  +F SM  +  + P ++HY
Sbjct: 404 RANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHY 463

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
           G ++DLLG +G  +EA +++ ++ M  D V+W +LL AC+++G+VE+ E  ++ L+++  
Sbjct: 464 GCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEP 523

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
            N G +VLLSN+YA   RW++V ++R  + ++ +KKVPG S IE+  V+H+F   DK H 
Sbjct: 524 KNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 583

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           + REIY  L+E+   ++E G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   
Sbjct: 584 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 643

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           T + + KNLR+CR+CH+  KLISK+Y REII RDR RFH F+DG CSC DYW
Sbjct: 644 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 214/417 (51%), Gaps = 40/417 (9%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNAVL 80
           ++ + A +  TG   +      SK+IEF  LSP  + L YA ++F  I  P+   +N + 
Sbjct: 3   LRMIHAQMIKTGLHNTNY--ALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMF 60

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           RG A SS P +A+  Y  M+      +  T  F LK+CA+  A  E  QIH HVL+ G+ 
Sbjct: 61  RGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 120

Query: 141 ADALLGTTLLDV-------------------------------YAKVGEIVSAKKVFDEM 169
            D  + T+L+ +                               YA  G I SA+K+FDE+
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 180

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
            ++D+ SWNA+I+G A+     EA++LFK M M+   +P+E T++  ++AC    + + G
Sbjct: 181 PIKDVVSWNAMISGYAETGNNKEALELFKEM-MKTNVRPDESTMVSVVSACAQSASIELG 239

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
            ++H +I +     N+ + NA+ID+Y KCG ++ A  +F+ +   K +++WNT++  +  
Sbjct: 240 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLS-YKDVISWNTLIGGYTH 298

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNM 347
                 AL LF++M R+G  P+DV+ L+ L AC H G ++ G  + ++ +    GV    
Sbjct: 299 MNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANAS 358

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASR 403
            H  S++D+  + G ++ A  +  S+ +   +  W  ++    ++G    A +I SR
Sbjct: 359 SHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHGRANAAFDIFSR 414



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 127/239 (53%), Gaps = 4/239 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E+  A  LF  ++      +N ++ G  H +    A+L +++MLR     + +T    L 
Sbjct: 270 EVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILP 329

Query: 117 ACARVLALFETLQIHSHVLRH--GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           ACA + A+     IH ++ +   G    +   T+L+D+YAK G+I +A++VFD +  R +
Sbjct: 330 ACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSL 389

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
           +SWNA+I G A    A+ A D+F RM+   + +P+++T +G L+AC H G    G  I  
Sbjct: 390 SSWNAMIFGFAMHGRANAAFDIFSRMRKNEI-EPDDITFVGLLSACSHSGMLDLGRHIFR 448

Query: 235 YIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            ++E+ ++   +     +ID+    GL  +A E+ + ++     V W +++ A  +HG+
Sbjct: 449 SMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGN 507


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/544 (40%), Positives = 328/544 (60%), Gaps = 7/544 (1%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML--R 101
           + +  F ALSP  +L YAH +   ++  ++   N ++R  + +  PT A+  +  ML   
Sbjct: 30  TPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQP 89

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
            S R D  T  F LK+CAR+       Q+H  + + G  +D  +   L+ +Y+  G+   
Sbjct: 90  TSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGR 149

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A KVF +M  RD+ SW ++I G    + A EA+ LF+ M  +GV +PNE TV+  L AC 
Sbjct: 150 AYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGV-EPNEATVVSVLRACA 208

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
             GA   G ++   I E ++ +   V  A+IDMYAKCG +  A +VFD I   K +  W 
Sbjct: 209 DAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGI-VNKDVFAWT 267

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-AN 340
            M+   A HG    A+ LF+QM   G++PD+ +  A L AC +AG   +G   FNSM   
Sbjct: 268 AMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCK 327

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE- 399
            G+KP ++HYG +VDLL R G L EA + ++ + +  D+VLW+TL+ A +++GD++ +E 
Sbjct: 328 YGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQ 387

Query: 400 -IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGV 458
            +  R L++M S++CG +VLL N+YA+  +W D  ++R+ M  + + K PG S IEV G+
Sbjct: 388 LMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGL 447

Query: 459 IHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKL 518
           +H+F   D  H++  +IY KLDE+  ++K  GY    S VL +I  +EK   L +HSEKL
Sbjct: 448 VHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKL 507

Query: 519 AVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSC 578
           AVAFGLI TS  T I++ KNLR C DCH V+KLISK+Y ++IIVRDR+RFH F +G CSC
Sbjct: 508 AVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSC 567

Query: 579 KDYW 582
           KDYW
Sbjct: 568 KDYW 571


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/532 (41%), Positives = 337/532 (63%), Gaps = 13/532 (2%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           +A A  +F +I       +NA++ G A +     A+  +++M++ + R D  T    + A
Sbjct: 185 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSA 244

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA+  ++    Q+HS +  HGF ++  +   L+D+Y K GE+ +A  +F+ +  +D+ SW
Sbjct: 245 CAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISW 304

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N LI G    NL  EA+ LF+ M   G   PN+VT+L  L AC HLGA + G  IH YI 
Sbjct: 305 NTLIGGYTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSILPACAHLGAIEIGRWIHVYIN 363

Query: 238 EERLDMNVVVCNA------VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           + RL     V NA      +IDMYAKCG ++ A +VFD+I  R SL +WN M+  FA+HG
Sbjct: 364 K-RLKG---VANASSHRTSLIDMYAKCGDIEAAQQVFDSILNR-SLSSWNAMIFGFAMHG 418

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHY 350
               A ++F +M +  ++PDD++++  L AC+H+G++D G  +F SM  +  + P ++HY
Sbjct: 419 RANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHY 478

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
           G ++DLLG +G  +EA +++ ++ M  D V+W +LL AC++Y +VE+ E  ++ L+++  
Sbjct: 479 GCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEP 538

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
            N G +VLLSN+YA   RW++V ++R  + ++ +KKVPG S IE+  V+H+F   DK H 
Sbjct: 539 KNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 598

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           + REIY  L+E+   ++E G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   
Sbjct: 599 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 658

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           T + + KNLR+CR+CH+  KLISK+Y REII RDR RFH F+DG CSC DYW
Sbjct: 659 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 220/433 (50%), Gaps = 45/433 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSP-LNELAYAHAL 64
           +LL  C +  ++  IH + ++  L  T    SKL       IEF  LSP  + L YA ++
Sbjct: 7   SLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKL-------IEFCVLSPHFDGLPYAISV 59

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F  I  P+   +N + RG A SS P +A+  Y  M+      +  T  F LK+CA+  A 
Sbjct: 60  FETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAF 119

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDV-------------------------------Y 153
            E  QIH HVL+ G+  D  + T+L+ +                               Y
Sbjct: 120 REGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGY 179

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           A  G I SA+K+FDE+ ++D+ SWNA+I+G A+     EA++LFK M M+   +P+E T+
Sbjct: 180 ASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEM-MKTNVRPDESTM 238

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           +  ++AC    + + G ++H +I +     N+ + NA+ID+Y KCG ++ A  +F+ +  
Sbjct: 239 VSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLS- 297

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG-- 331
            K +++WNT++  +        AL LF++M R+G  P+DV+ L+ L AC H G ++ G  
Sbjct: 298 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRW 357

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           + ++ +    GV     H  S++D+  + G ++ A  +  S+ +   +  W  ++    +
Sbjct: 358 IHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAM 416

Query: 392 YGDVEMA-EIASR 403
           +G    A +I SR
Sbjct: 417 HGRANAAFDIFSR 429



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 126/239 (52%), Gaps = 4/239 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E+  A  LF  ++      +N ++ G  H +    A+L +++MLR     + +T    L 
Sbjct: 285 EVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILP 344

Query: 117 ACARVLALFETLQIHSHVLRH--GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           ACA + A+     IH ++ +   G    +   T+L+D+YAK G+I +A++VFD +  R +
Sbjct: 345 ACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSL 404

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
           +SWNA+I G A    A+ A D+F RM+   + +P+++T +G L+AC H G    G  I  
Sbjct: 405 SSWNAMIFGFAMHGRANAAFDIFSRMRKNEI-EPDDITFVGLLSACSHSGMLDLGRHIFR 463

Query: 235 YIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            ++E+ ++   +     +ID+    GL  +A E+ + ++     V W +++ A  ++ +
Sbjct: 464 SMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYAN 522


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/528 (38%), Positives = 336/528 (63%), Gaps = 2/528 (0%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           N + YA ++FR I+ P T DF  ++RG  +      A+ +Y +M+      D  T    L
Sbjct: 81  NSMNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLL 140

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           KAC R+ A+ E  QIH HV + G  AD  +  +L+++Y + GE+  +  VF+++  +  A
Sbjct: 141 KACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAA 200

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           SW+++ +      + SE + LF+ M  E   K  E  ++ AL+AC + GA   G  IH +
Sbjct: 201 SWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGF 260

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           +     ++N++V  +++DMY KCG +D A  +F  ++ R +L T++ M+  FA+HG+G  
Sbjct: 261 LLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNL-TYSAMISGFALHGEGES 319

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVV 354
           AL +F +M + G++PD V Y++ L AC+H+GLV +G R+F  M   G V+P  +HYG +V
Sbjct: 320 ALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLV 379

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLLGRAG L+EA + ++S+ +  + V+W++ L  C+++ ++E+ +IA+++L+++ S+N G
Sbjct: 380 DLLGRAGLLEEALETIQSIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPG 439

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
           D++L+SN+Y+    WDDV R R  +  + +K+ PGFS ++V G  H+F + D+SH + +E
Sbjct: 440 DYLLISNMYSQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKE 499

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY+ L ++ +++K  GY+   + +L ++ EEEK+  L  HS+K+A+AF L+ T   + I+
Sbjct: 500 IYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFALLYTPPGSIIK 559

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +NLR+C DCH   K IS +Y REI+VRDR RFH FK G CSCKDYW
Sbjct: 560 IARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/529 (42%), Positives = 321/529 (60%), Gaps = 6/529 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  LF +I       +NA++ G A S +   A+ ++ +M R     +  T    L A
Sbjct: 210 LDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSA 269

Query: 118 CARVLALFETLQ-IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           CA+  +  +    + S +   G  ++  L   L+D+Y K G++  A  +F+++  +++ S
Sbjct: 270 CAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVS 329

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN +I G    +   EA+ LF+RM M+    PN+VT L  L AC +LGA   G  +H Y+
Sbjct: 330 WNVMIGGYTHMSCYKEALGLFRRM-MQSNIDPNDVTFLSILPACANLGALDLGKWVHAYV 388

Query: 237 REERLDM--NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            +    M   V +  ++IDMYAKCG L  A  +FD +   KSL TWN M+  FA+HG   
Sbjct: 389 DKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNT-KSLATWNAMISGFAMHGHTD 447

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSV 353
            AL LF +M   G  PDD++++  L AC HAGL+  G R F+SM  +  V P + HYG +
Sbjct: 448 TALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCM 507

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           +DL GRAG   EA  +VK++ M  D  +W +LLGAC+++  +E+AE  ++ L E+   N 
Sbjct: 508 IDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENP 567

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
             +VLLSN+YA   RW+DV ++R  + +  +KKVPG S IEV  V+H+F   DK H +  
Sbjct: 568 SAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSN 627

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           EIY+ LDEI  ++++ G+   TS VL+D+ EE KE  L +HSEKLA+AFGLIST   T+I
Sbjct: 628 EIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTI 687

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++ KNLR+C +CH   KLISK++NREII RDR RFH FKDG+CSCKDYW
Sbjct: 688 RIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 214/411 (52%), Gaps = 39/411 (9%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           +KQ+ + +  TG   +      SK+IEF A+SP  +L+YA +LF+ I  P+   +N ++R
Sbjct: 44  LKQIHSQIIKTGLHNTHF--ALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIR 101

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
           GL+ S  P  A+ +Y  M+      +  T     K+C ++    E  Q+H+HVL+ G   
Sbjct: 102 GLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEH 161

Query: 142 DALLGTTLLDVYAKVGEIVS-------------------------------AKKVFDEMG 170
           +A + T+L+++YA+ GE+V+                               A+++FDE+ 
Sbjct: 162 NAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIP 221

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG-AWKEG 229
           VRD+ SWNA+I+G AQ     EA+  F+ M+   V  PN  T+L  L+AC   G + + G
Sbjct: 222 VRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKV-TPNVSTMLSVLSACAQSGSSLQLG 280

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
           + +  +I +  L  N+ + N +IDMY KCG L++A  +F+ I+  K++V+WN M+  +  
Sbjct: 281 NWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQ-DKNVVSWNVMIGGYTH 339

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNM 347
                 AL LF +M ++ + P+DV++L+ L AC + G +D G  V  +       +K  +
Sbjct: 340 MSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTV 399

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             + S++D+  + G L  A  I   ++  + +  W  ++    ++G  + A
Sbjct: 400 ALWTSLIDMYAKCGDLAVAKRIFDCMNTKS-LATWNAMISGFAMHGHTDTA 449


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/646 (36%), Positives = 362/646 (56%), Gaps = 76/646 (11%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE-LAYAHAL 64
           A+L   ++    S  H+KQ  A +  TG  Q     +   +++ YA    N  L++  +L
Sbjct: 34  AILHLLNTQCTTSLHHLKQAHALILRTGHLQDSY--IAGSLVKSYANVSTNRYLSFESSL 91

Query: 65  --FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
             F  +  P+   +N +++    +++P  A+L Y +M+    R +  T    LKAC+   
Sbjct: 92  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAG 151

Query: 123 ALFETLQIHSHVLRHGF--------------------------------LADALLGTTLL 150
            + E +Q+H+H+++HG                                   DA+    ++
Sbjct: 152 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 211

Query: 151 DVYAKVGEIVSAKKVF--------------------------------DEMGVRDIASWN 178
           D Y + GE+ +A+++F                                DEM  RD  SW+
Sbjct: 212 DGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWS 271

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           A+I G  Q     EA+++F +M+ E + +P +  +   L+AC +LGA  +G  IH Y + 
Sbjct: 272 AMIDGYIQEGCFMEALEIFHQMQKEKI-RPRKFVLPSVLSACANLGALDQGRWIHTYAKR 330

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             + ++ V+  +++DMYAKCG +D A+EVF+ +   K + +WN M+   A+HG    A++
Sbjct: 331 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDAID 389

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLL 357
           LF +M    + P++++++  L AC H GLV  G+ +FNSM    GV+P ++HYG +VDLL
Sbjct: 390 LFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLL 446

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           GRAG L EA  +V S+       +W  LLGAC+ +G+VE+ E   + L+E+   N G + 
Sbjct: 447 GRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYT 506

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG-GVIHKFFTSDKSHVKWREIY 476
           LLSN+YA   RW++VG VRK MK R +K  PG S I++G G +HKF   D SH + ++IY
Sbjct: 507 LLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIY 566

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
           + LD++  +++  GY    S VL DI EEEKE A+  HSEKLA+ FGLI+TS  T+I++ 
Sbjct: 567 QMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIV 626

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+C DCH   KLIS+VYNREIIVRDR+R+H F++GACSCKD+W
Sbjct: 627 KNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/585 (38%), Positives = 355/585 (60%), Gaps = 27/585 (4%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLN-ELA 59
           + +L +L+ KC++        +KQ+QA+ T    +Q+    V +K I F   +P    + 
Sbjct: 26  LPHLISLIPKCTTLK-----ELKQIQAY-TIKTNYQNNT-NVITKFINFCTSNPTKASME 78

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           +AH LF QI  P+   FN + RG A  + P   +  +R+ LR                 +
Sbjct: 79  HAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRRCLR---------------LVS 123

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           +V AL E  Q+H   ++ G   +  +  TL+++Y   G+I ++++VFD++    + ++NA
Sbjct: 124 KVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNA 183

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I  LA+ N A+EA+ LF+ ++  G+ KP +VT+L  L++C  LG+   G  +HEY+++ 
Sbjct: 184 IIMSLARNNRANEALALFRELQEIGL-KPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKY 242

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
             D  V V   +IDMYAKCG LD A  VF ++  R +   W+ +++A+A HGDG +A+ +
Sbjct: 243 GFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQA-WSAIIVAYATHGDGFQAISM 301

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLG 358
             +M +  V+PD++++L  L AC+H GLV++G   F+ M N  G+ P++KHYG +VDLLG
Sbjct: 302 LNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLG 361

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAGRL EA   +  + +    +LW+TLL AC  +G+VEM +    ++ E+  ++ GD+V+
Sbjct: 362 RAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVI 421

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
            SNL A Y +WDDV  +RK M ++   K+PG S IEV  V+H+FF  +  H     ++  
Sbjct: 422 FSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRA 481

Query: 479 LDEIMFKIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
           LDE++ ++K  GY   TS V + D+ +EEKE  L YHSEKLA+ FGL++T   T+I+V K
Sbjct: 482 LDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVK 541

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+C DCH+  K IS ++ R+II+RD  RFH FKDG CSC DYW
Sbjct: 542 NLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/561 (40%), Positives = 351/561 (62%), Gaps = 10/561 (1%)

Query: 28  HLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSS 87
            L   G F    F + +K+I  +  S L+ +  A  +F +    +   +NA+ R LA + 
Sbjct: 93  QLLVDGGFDQDPF-LATKLINMF--SELDTVDNARKVFDKTRKRTIYVWNALFRALALAG 149

Query: 88  KPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ----IHSHVLRHGFLADA 143
           +  + +  Y +M      SD  T ++ LKAC     L   LQ    IH+H+LRHG+ A  
Sbjct: 150 RGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHV 209

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            + TTL+D+YA+ G +  A  VFDEM V+++ SW+A+IA  A+     EA++LF+ M + 
Sbjct: 210 HVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLN 269

Query: 204 GVFK-PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
                PN VT++  L AC    A ++G  IH YI    LD  + V +A+I MYA+CG L+
Sbjct: 270 THDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLE 329

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
               +FD +  +K +V WN+++ ++ +HG G +A+++FE+M   G  P  +S+++ L AC
Sbjct: 330 SGQLIFDRMH-KKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGAC 388

Query: 323 NHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +H GLV++G +LF SM    G++P+++HY  +VDLLGRA RL EA  I++ + +     +
Sbjct: 389 SHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKV 448

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W +LLGAC+++  VE+AE AS++L ++   N G++VLL+++YA  E WD+V RV+K + +
Sbjct: 449 WGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDS 508

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           R+++KVPG S+IEV   I+ F + D+ + +  +++  L  +  ++K+ GY   T  VL+D
Sbjct: 509 RELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYD 568

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           + +EEKE  +  HSEKLAVAFGLI+TS+  +I++ KNLR+C DCH V K ISK  +REI+
Sbjct: 569 LDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIM 628

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRD  RFH FKDG CSC DYW
Sbjct: 629 VRDLNRFHHFKDGVCSCGDYW 649



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 151/299 (50%), Gaps = 11/299 (3%)

Query: 103 SHRSDAL--TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
           SH S+    TC   + + AR  +L + L +H  ++  GF  D  L T L+++++++  + 
Sbjct: 62  SHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVD 121

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           +A+KVFD+   R I  WNAL   LA     ++ ++L+ RM M GV   +  T    L AC
Sbjct: 122 NARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGV-SSDRFTYTYLLKAC 180

Query: 221 GH----LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
                 +   ++G +IH +I       +V V   ++DMYA+ G +  A  VFD +   K+
Sbjct: 181 VASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPV-KN 239

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           +V+W+ M+  +A +G    ALELF +M        P+ V+ ++ L AC     ++ G  +
Sbjct: 240 VVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLI 299

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
              +   G+   +    +++ +  R G+L E+  ++       D+VLW +L+ +  L+G
Sbjct: 300 HAYILRRGLDSILPVISALITMYARCGKL-ESGQLIFDRMHKKDVVLWNSLISSYGLHG 357


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 333/560 (59%), Gaps = 10/560 (1%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           Q+ +  T TG +      V +  I  Y  S   ++  A  LFR+   P    +NA++ G 
Sbjct: 242 QIHSLATKTGCYSHDY--VLTGFISLY--SKCGKIKMASTLFREFRRPDIVAYNAMIHGY 297

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
             + +   ++  +++++    +  + T    +     ++ ++    IH + L+  FL+  
Sbjct: 298 TSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIY---AIHGYSLKSNFLSHT 354

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            + T L  VY+K+ EI SA+K+FDE   + + SWNA+I+G  Q  L  +A+ LF+ M+  
Sbjct: 355 SVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ-N 413

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
             F PN VT+   L+AC  LGA   G  +H+ +R    + ++ V  A+I MYAKCG + +
Sbjct: 414 SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAE 473

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A  +FD +  +K+ VTWNTM+  + +HG G  AL +F +M  +G+ P  V++L  L AC+
Sbjct: 474 ARRLFDFMP-KKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACS 532

Query: 324 HAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           HAGLV +G  +FNSM +  G +P++KHY  VVD+LGRAG LQ A   ++++ +     +W
Sbjct: 533 HAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVW 592

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
           +TLLGAC+++ D  +A   S KL E+  +N G  VLLSN+++A   +     VR+  K R
Sbjct: 593 ETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKR 652

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            + K PG++ IE+G   H F + D+SH + + I+EKL+++  K++E GY   T   LHD+
Sbjct: 653 KLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDV 712

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            EEE+E  +  HSE+LA+AFGLI+T   T I++ KNLR+C DCH   KLISK+  R I+V
Sbjct: 713 EEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVV 772

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFH FKDG CSC DYW
Sbjct: 773 RDANRFHHFKDGVCSCGDYW 792



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 133/278 (47%), Gaps = 2/278 (0%)

Query: 52  LSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALT 110
           LS L  + YA  +F  +  P    FN ++RG + +  P +++  +  + + +  + ++ T
Sbjct: 62  LSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSST 121

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
            +FA+ A +          IH   +  G  ++ LLG+ ++ +Y K   +  A+KVFD M 
Sbjct: 122 YAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMP 181

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            +D   WN +I+G  +  +  E++ +F+ +  E   + +  T+L  L A   L   + G 
Sbjct: 182 EKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGM 241

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           +IH    +     +  V    I +Y+KCG +  A  +F   + R  +V +N M+  +  +
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFR-RPDIVAYNAMIHGYTSN 300

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
           G+   +L LF+++  +G K    + ++ +    H  L+
Sbjct: 301 GETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLI 338



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 117/271 (43%), Gaps = 3/271 (1%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           Q H+ ++ HGF  D  L T L    + +G I  A+ +F  +   D+  +N L+ G +   
Sbjct: 38  QTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
               ++ +F  ++     KPN  T   A++A       + G  IH     +  D  +++ 
Sbjct: 98  SPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLG 157

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAG 307
           + ++ MY K   ++ A +VFD +   K  + WNTM+  +  +     ++++F  +   + 
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMP-EKDTILWNTMISGYRKNEMYVESIQVFRDLINESC 216

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
            + D  + L  L A      +  G+++ +     G   +       + L  + G+++ A 
Sbjct: 217 TRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMAS 276

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            + +      D+V +  ++      G+ E++
Sbjct: 277 TLFREFRR-PDIVAYNAMIHGYTSNGETELS 306


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/542 (40%), Positives = 331/542 (61%), Gaps = 4/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  YA      L  A   F+Q+       +N+++     +  P  A  ++ +M  
Sbjct: 353 VSNALINMYA--KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQL 410

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL-ADALLGTTLLDVYAKVGEIV 160
              + D LT        A+      +  +H  ++R G+L  D ++G  ++D+YAK+G + 
Sbjct: 411 NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLD 470

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           SA KVF+ + V+D+ SWN LI G AQ  LASEA++++K M+      PN+ T +  L A 
Sbjct: 471 SAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAY 530

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
            H+GA ++G +IH  + +  L ++V V   +ID+Y KCG L  A  +F  +  ++S VTW
Sbjct: 531 AHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTW 589

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           N ++    +HG   + L+LF +M   GVKPD V++++ L AC+H+G V++G   F  M  
Sbjct: 590 NAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE 649

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            G+KP++KHYG +VDLLGRAG L+ A   +K + +  D  +W  LLGAC+++G++E+ + 
Sbjct: 650 YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKF 709

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           AS +L E+ S N G +VLLSN+YA   +W+ V +VR   + R +KK PG+S IEV   + 
Sbjct: 710 ASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVD 769

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F+T ++SH K +EIYE+L  +  K+K  GY    S VL D+ E+EKE+ L  HSE+LA+
Sbjct: 770 VFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAI 829

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AFG+IST   + I++FKNLR+C DCH+  K IS++  REI+VRD  RFH FKDG CSC D
Sbjct: 830 AFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGD 889

Query: 581 YW 582
           YW
Sbjct: 890 YW 891



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 182/364 (50%), Gaps = 8/364 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           FQ  +F V + +I  Y  S       A +LF  +       +NA++ GL  +     A+ 
Sbjct: 246 FQWNVF-VAASLIHMY--SRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 302

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
              +M     + + +T    L  C ++  +   + IH +V++HG   D  +   L+++YA
Sbjct: 303 VLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYA 362

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G +  A+K F +M + D+ SWN++IA   Q +    A   F +M++ G F+P+ +T++
Sbjct: 363 KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNG-FQPDLLTLV 421

Query: 215 GALAACGHLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
              +        K    +H +I R   L  +VV+ NAV+DMYAK GLLD A +VF+ I  
Sbjct: 422 SLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFE-IIL 480

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGV 332
            K +++WNT++  +A +G    A+E+++ M     + P+  ++++ L A  H G +  G+
Sbjct: 481 VKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGM 540

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
           R+   +    +  ++     ++D+ G+ GRL +A  +   V   +  V W  ++    ++
Sbjct: 541 RIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-VTWNAIISCHGIH 599

Query: 393 GDVE 396
           G  E
Sbjct: 600 GHAE 603



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 185/367 (50%), Gaps = 14/367 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K L A L   G+ QS    + ++++  YA   L +++ +   F QI       +N+++  
Sbjct: 136 KCLHALLVVAGKVQSIF--ISTRLVNLYA--NLGDVSLSRCTFDQIPQKDVYTWNSMISA 191

Query: 83  LAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
             H+     A+  + Q+L  S  R D  T    LKAC     L +  +IH    + GF  
Sbjct: 192 YVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRRIHCWAFKLGFQW 248

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           +  +  +L+ +Y++ G    A+ +FD+M  RD+ SWNA+I+GL Q   A++A+D+   M+
Sbjct: 249 NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 308

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           +EG+ K N VTV+  L  C  LG       IH Y+ +  L+ ++ V NA+I+MYAK G L
Sbjct: 309 LEGI-KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY--LAAL 319
           + A + F  +     +V+WN+++ A+  + D   A   F +M   G +PD ++   LA++
Sbjct: 368 EDARKAFQQMFI-TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASI 426

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            A +        V  F  M    +  ++    +VVD+  + G L  A  + + + +  D+
Sbjct: 427 VAQSRDCKNSRSVHGF-IMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFE-IILVKDV 484

Query: 380 VLWQTLL 386
           + W TL+
Sbjct: 485 ISWNTLI 491


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/548 (40%), Positives = 331/548 (60%), Gaps = 11/548 (2%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTN------AVLWYR 97
           SK+  F A SP  +L YA  L     + ++  +N ++R  +H+S PT+        ++  
Sbjct: 21  SKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIRAYSHTSNPTHHFQALSLFIFML 80

Query: 98  QMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157
           Q      + D  T SFALK+C R+    +  Q+H  + + GF  D  +   L+ +Y+++G
Sbjct: 81  QPHTNVPKPDTFTYSFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEIG 140

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
           E+V A++VFD M  RD+ SW ++IAG    +L  EA+ LF+RM   GV   NE TV+  L
Sbjct: 141 ELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGV-DVNEATVISVL 199

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
             C   GA   G K+H  ++E+ +D    VC A+I MY+KCG L+ A EVFD++  R   
Sbjct: 200 RGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDVF 259

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           V W  M+   A HG    A+ELF +M    VKPD+ + +  L A  +AGLV +G   FN 
Sbjct: 260 V-WTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVREGYMFFND 318

Query: 338 MAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
           +     +KPN+KH+G +VDLL + G L+EA D + ++ M  D V+W+TL+ AC+++ D E
Sbjct: 319 VQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVHADTE 378

Query: 397 MAE--IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
            AE  +   +L  M +++ G ++L SN+YA+  +W D   VR+ M  + + K PG S IE
Sbjct: 379 RAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGLVKPPGSSRIE 438

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYH 514
           V GV+H+F   D  H    +I+ KLD+++ K+++ GY    S V+ ++ +EEK   L +H
Sbjct: 439 VDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKVSEVMLEMDDEEKAIQLLHH 498

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SEKLA+A+GLI T   + I++ KNLR C DCH+ +KLISKVY R+IIVRDR+RFH FK+G
Sbjct: 499 SEKLALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKLISKVYQRDIIVRDRIRFHHFKNG 558

Query: 575 ACSCKDYW 582
            CSCKDYW
Sbjct: 559 DCSCKDYW 566


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/645 (37%), Positives = 359/645 (55%), Gaps = 80/645 (12%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LLQ  +    +  IH   ++  L       +KL          +A S  N+L YA ++F
Sbjct: 8   SLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLR------RLFACSSANDLLYARSVF 61

Query: 66  RQINAPSTNDFNAVLRGLAHSSK------------------------------------P 89
            +I +P T  +N ++R   +S                                      P
Sbjct: 62  DEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDP 121

Query: 90  TNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTL 149
            N    + Q+L+    SD     F   A   + A F  ++I  ++L      D +    L
Sbjct: 122 GNGQKLHTQVLKIGLGSDL----FVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVL 177

Query: 150 LDVYAKVGEIV-------------------------------SAKKVFDEMGVRDIASWN 178
           L  Y +VGEI                                +AKK+FD    RD+ SW+
Sbjct: 178 LAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWS 237

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ++IA  A+   ++EA+ LF  M++  V  P++VT++  L+ACG +GA   G  IHE I  
Sbjct: 238 SMIAAYAKARQSNEALRLFHEMQLANVL-PDKVTMVSVLSACGDVGALGMGKMIHECIER 296

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            R+++++ +  +++DMYAKCG +D +  VF+ +  R  +  W+ M+M  A HG G  AL+
Sbjct: 297 NRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNR-DVFAWSAMIMGLANHGFGELALD 355

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLL 357
            F +M    +KP+DV+++  L AC+H GLVD+G   F SM+    V P ++HYG VVD+L
Sbjct: 356 HFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDIL 415

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           GRAGRLQEA +++KS+    D ++W+ LLGAC++Y +VE+AE A+  L+E+  +  G++V
Sbjct: 416 GRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYV 475

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+Y+  + WD V  VR+ MKN +++KVPG S IEV   +H+F   D+SH + ++I  
Sbjct: 476 LLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILR 535

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            L EI  ++K  GYA  T+ VL D  E+EKENAL +HSEKLA+AFGL+ST+  ++I++ K
Sbjct: 536 MLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVK 595

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+C DCH  IKLIS+ Y R IIVRDR RFH F +G+CSCKDYW
Sbjct: 596 NLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/471 (46%), Positives = 303/471 (64%), Gaps = 14/471 (2%)

Query: 124 LFETLQIHSHVLRHGFLADALLG-----------TTLLDVYAKVGEIVSAKKVFDEMGVR 172
            F T  IH H LR   ++   L            T +L  YAK GE+ +A+ +FD M  R
Sbjct: 94  FFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEER 153

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D   WN +I G  Q  + +EA+ LF+RM ++   KPNEVTVL  L+ACG LGA + G  +
Sbjct: 154 DGVCWNVMIDGYTQNGMPNEALVLFRRM-LKAKAKPNEVTVLSVLSACGQLGALESGRWV 212

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H YI    +  NV V  A++DMY+KCG L+ A  VFD I   K +V WN+M++ +A+HG 
Sbjct: 213 HSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID-DKDVVAWNSMIVGYAMHGF 271

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYG 351
              AL+LF+ M R G+ P +++++  L AC H+G V +G  +FN M +  G++P ++HYG
Sbjct: 272 SQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYG 331

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +V+LLGRAG +++A ++VK++++  D VLW TLLGAC+L+G + + E     LV+    
Sbjct: 332 CMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLA 391

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           N G ++LLSN+YAA   WD V R+R  MK+  VKK PG S IEV   +H+F     +H K
Sbjct: 392 NSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPK 451

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
            +EIY  L+EI   +K +GY   T  VLHDIGE EKE +L  HSEKLA+AFGLI+T   T
Sbjct: 452 RKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGT 511

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +I++ KNLR+C DCH+V KLISK+  R+I+VRDR RFH F +G+CSC DYW
Sbjct: 512 TIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 146/292 (50%), Gaps = 9/292 (3%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           EL  A  LF  +       +N ++ G   +  P  A++ +R+ML+   + + +T    L 
Sbjct: 139 ELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLS 198

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC ++ AL     +HS++  +G   +  +GT L+D+Y+K G +  A+ VFD++  +D+ +
Sbjct: 199 ACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVA 258

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN++I G A    + EA+ LFK M   G+  P  +T +G L+ACGH G   EG  I   +
Sbjct: 259 WNSMIVGYAMHGFSQEALQLFKSMCRMGL-HPTNITFIGILSACGHSGWVTEGWDIFNKM 317

Query: 237 REER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD--- 292
           ++E  ++  +     ++++  + G +++A+E+  N+      V W T++ A  +HG    
Sbjct: 318 KDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIAL 377

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
           G + +EL      A    +  +Y+         G  D   RL   M + GVK
Sbjct: 378 GEKIVELLVDQNLA----NSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVK 425


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/567 (39%), Positives = 329/567 (58%), Gaps = 10/567 (1%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           QL A +  +G + S       K+  F ALSP  +L YA  + R ++ P++  +N ++R  
Sbjct: 11  QLHARILKSGAYDSNHGQDFHKLFTFSALSPSGDLNYARHILRTLHTPNSFYYNTMIRAY 70

Query: 84  AHSSKPTNAVLWYRQMLRGSH------RSDALTCSFALKACARVLALFETLQIHSHVLRH 137
           + S+ PT A   +  M           R D  T  F LKAC++        QIH  V + 
Sbjct: 71  SDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGKQIHGLVFKS 130

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           G  +D  +   L+ +Y+  GE   A KVFD+M  RD+ SW ++I G    +   EA+ LF
Sbjct: 131 GVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLF 190

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
             M   G+ +PNEVTV   L AC   GA   G++IH +++E+    N  V  A+IDMYAK
Sbjct: 191 THMIENGI-EPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAK 249

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           CG +D A EVFD     K +  W  ++   A HG   +A+E FE M ++ VK D+ +  A
Sbjct: 250 CGCIDGALEVFDET-LEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITA 308

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            L A  +AGLV +G+  F  +    +KP ++HYG VVD+L RAGRL++A + ++ + +  
Sbjct: 309 VLSAYRNAGLVSEGLLFFRRLKKHKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIEP 368

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKL--VEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
           D VLW+TL+  C++ GDVE +E   R+L  + M S + G +VLL N+YAA  +W++  + 
Sbjct: 369 DAVLWRTLIWGCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKT 428

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           R+ M  R + K P  S IE+ GV+H+F   D  H +   +YEKL+++  +++  GY    
Sbjct: 429 RELMYQRGLMKPPACSRIEIDGVVHEFTAGDSRHDEATAVYEKLEDVEERLRGEGYNPIV 488

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
           S VL +I ++EK + L +HSEKLAV+FGL+ +S  + I++ KNLR C DCH  +KLISKV
Sbjct: 489 SEVLLEIDDDEKASQLLHHSEKLAVSFGLVKSSPGSVIRIVKNLRSCEDCHSFMKLISKV 548

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
           Y R+IIVRDR+RFH F  G CSC D W
Sbjct: 549 YQRDIIVRDRIRFHHFSGGNCSCGDRW 575


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/524 (43%), Positives = 318/524 (60%), Gaps = 5/524 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  I   +   + A + G     K   A+  +R++L    R D+ +    L AC R
Sbjct: 162 AFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKR 221

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              L     I  ++  +G + +  + T L+D Y K G +  A+ VFD M  ++I SW+++
Sbjct: 222 TGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSM 281

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G A   L  EA+DLF +M  EG+ KP+   ++G L +C  LGA + GD     I    
Sbjct: 282 IQGYASNGLPKEALDLFFKMLNEGL-KPDCYAMVGVLCSCARLGALELGDWASNLINGNE 340

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              N V+  A+IDMYAKCG +D+A+EVF  ++ +K  V WN  +   A+ G    AL LF
Sbjct: 341 FLDNSVLGTALIDMYAKCGRMDRAWEVFRGMR-KKDRVVWNAAISGLAMSGHVKDALGLF 399

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC--GVKPNMKHYGSVVDLLG 358
            QM ++G+KPD  +++  LCAC HAGLV++G R FNSM  C   + P ++HYG +VDLLG
Sbjct: 400 GQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSM-ECVFTLTPEIEHYGCMVDLLG 458

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG L EA  ++KS+ M  + ++W  LLG C+L+ D ++ E+  +KL+ +   + G++VL
Sbjct: 459 RAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVL 518

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YAA  +W++  ++R  M  R VKK+PG+S+IEV GV+H+F   D SH    +IY K
Sbjct: 519 LSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAK 578

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L E+   +K  GY   T  VL DI EEEKE+ +  HSEKLAVAFGLIST+    I V KN
Sbjct: 579 LGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKN 638

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH+ IK IS++  REIIVRD  RFH F DG CSCKDYW
Sbjct: 639 LRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/379 (30%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEF-YALSPLNELAYAHALFRQINAPSTNDFNAV 79
           H+K + A L   G  +     + +K++ F +     N   Y+  +  Q   P+   FN +
Sbjct: 25  HLKHIHAALLRLGLDEDTY--LLNKVLRFSFNFGNTN---YSFRILDQTKEPNIFLFNTM 79

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           +RGL  +     ++  Y  M +     D+ T  F LKACARVL     +++HS V++ G 
Sbjct: 80  IRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGC 139

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
            ADA +  +L+++Y K G I +A KVFD++  ++ ASW A I+G        EA+D+F+R
Sbjct: 140 EADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRR 199

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           + +E   +P+  +++  L+AC   G  + G+ I EYI E  +  NV V  A++D Y KCG
Sbjct: 200 L-LEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCG 258

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            +++A  VFD +   K++V+W++M+  +A +G    AL+LF +M   G+KPD  + +  L
Sbjct: 259 NMERARSVFDGM-LEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVL 317

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           C+C   G ++ G    N +       N     +++D+  + GR+  A ++ + +    D 
Sbjct: 318 CSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRK-KDR 376

Query: 380 VLWQTLLGACQLYGDVEMA 398
           V+W   +    + G V+ A
Sbjct: 377 VVWNAAISGLAMSGHVKDA 395


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/565 (40%), Positives = 343/565 (60%), Gaps = 9/565 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFY-ALSPLNELAYAHALFRQI-NAPSTNDFNAVL 80
           KQL A         +   P+ +K + F+ A      L YA A+   +  +P     N VL
Sbjct: 38  KQLHARALRAAPGVTPSHPLLAKHLLFHLAALKAPPLRYAVAVLSGLLPSPDPFSLNTVL 97

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           R  A S++P  A+  +R+ L      D  T    L+ACAR+LAL     +H+   ++G +
Sbjct: 98  RIFASSARPRVALALHRRHLAPP---DTHTYPPLLQACARLLALRYGEGLHAEACKNGLV 154

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGLAQGNLASEAVDLFK 198
           +   +  +L+ +Y   G   SA +VFDE+    R++ SWN+++ G A     +E + +F+
Sbjct: 155 SLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFR 214

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            M +E  F P+  TV+  L AC  +G    G ++H ++ +  L  N    NA+ID+YAKC
Sbjct: 215 EM-LEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKC 273

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G +D A ++F  +   +++V+W ++++  AV+G G  AL+LF  M R  + P +++ +  
Sbjct: 274 GGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGV 333

Query: 319 LCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           L AC+H GLVDDG R F+ M A  G+ P ++H G +VDLLGRAGR++EA + + ++ +  
Sbjct: 334 LYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEP 393

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
           + V+W+TLLGAC ++  +E+ E A  +LVE+   + GD+VLLSNLYA   RW DV  +RK
Sbjct: 394 NAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRK 453

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            M    V+K PG S +E+   +++F   D+SH +  +IYE L +I  +++  GY   TS 
Sbjct: 454 TMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSN 513

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           VL DI +EEKE+AL YHSE+LA+AF L+ +   T I++ KNLR+C DCH  IKLISKVY+
Sbjct: 514 VLADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYD 573

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           REIIVRDR RFH FK GACSCKDYW
Sbjct: 574 REIIVRDRSRFHHFKGGACSCKDYW 598


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/544 (39%), Positives = 336/544 (61%), Gaps = 5/544 (0%)

Query: 40   FPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM 99
              V++ +I  YA      +  A  LF ++       + A++ GLA S     A+  ++ M
Sbjct: 481  ISVQNALISMYA--RCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDM 538

Query: 100  LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
             +   + + +T +  L AC+   AL    +IH  V+  G   DA +  TL+++Y+  G +
Sbjct: 539  QQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSV 598

Query: 160  VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
              A++VFD M  RDI ++NA+I G A  NL  EA+ LF R++ EG  KP++VT +  L A
Sbjct: 599  KDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEG-LKPDKVTYINMLNA 657

Query: 220  CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
            C + G+ +   +IH  + ++    +  + NA++  YAKCG    A  VFD +  ++++++
Sbjct: 658  CANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVIS 716

Query: 280  WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
            WN ++   A HG G   L+LFE+M   G+KPD V++++ L AC+HAGL+++G R F SM+
Sbjct: 717  WNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMS 776

Query: 340  -NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             + G+ P ++HYG +VDLLGRAG+L E   ++K++    +  +W  LLGAC+++G+V +A
Sbjct: 777  RDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVA 836

Query: 399  EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGV 458
            E A+   +++  +N   +V LS++YAA   WD   ++RK M+ R V K PG S+IEVG  
Sbjct: 837  ERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDK 896

Query: 459  IHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKL 518
            +H F   D+SH +  +IY +LD++   +K  GY   T  V+HD+ E EKENA+C+HSE+L
Sbjct: 897  LHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERL 956

Query: 519  AVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSC 578
            A+A+GLIST   T I++FKNLR+C DCH   K I+K+ +REI+ RD  RFH FKDG CSC
Sbjct: 957  AIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSC 1016

Query: 579  KDYW 582
             DYW
Sbjct: 1017 GDYW 1020



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 167/318 (52%), Gaps = 3/318 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++ GLA       A   Y QM R     + +T    L AC    AL    +IHS V+
Sbjct: 414 WNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVV 473

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + GF+ D  +   L+ +YA+ G I  A+ +F++M  +DI SW A+I GLA+  L +EA+ 
Sbjct: 474 KDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALA 533

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +F+ M+  G  KPN VT    L AC    A   G +IH+ + E  L  +  V N +++MY
Sbjct: 534 VFQDMQQAG-LKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMY 592

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           + CG +  A +VFD +  ++ +V +N M+  +A H  G  AL+LF+++   G+KPD V+Y
Sbjct: 593 SMCGSVKDARQVFDRM-TQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY 651

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           +  L AC ++G ++    + + +   G   +     ++V    + G   +A  +V    M
Sbjct: 652 INMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDAL-LVFDKMM 710

Query: 376 GTDMVLWQTLLGACQLYG 393
             +++ W  ++G C  +G
Sbjct: 711 KRNVISWNAIIGGCAQHG 728



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 195/387 (50%), Gaps = 19/387 (4%)

Query: 7   LLQKCSSNGAVS---HIHIKQLQAHLTTTGQFQSKLFPVRSK--IIEFYALSPLNELAYA 61
           LL  C S  A+     IH++ ++A L         LF V     I+  YA      +  A
Sbjct: 250 LLSSCKSPSALECGREIHVEAMKARL---------LFDVNVANCILNMYA--KCGSIHEA 298

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             +F ++   S   +  ++ G A       A   +++M +     + +T    L A +  
Sbjct: 299 REVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGP 358

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
            AL     +HSH+L  G  +D  +GT L+ +YAK G     ++VF+++  RD+ +WN +I
Sbjct: 359 AALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMI 418

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            GLA+G    EA +++ +M+ EG+  PN++T +  L AC +  A   G +IH  + ++  
Sbjct: 419 GGLAEGGNWEEASEIYHQMQREGMM-PNKITYVILLNACVNPTALHWGREIHSRVVKDGF 477

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
             ++ V NA+I MYA+CG +  A  +F+ +  RK +++W  M+   A  G G  AL +F+
Sbjct: 478 MFDISVQNALISMYARCGSIKDARLLFNKM-VRKDIISWTAMIGGLAKSGLGAEALAVFQ 536

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
            M +AG+KP+ V+Y + L AC+    +D G R+   +   G+  +     ++V++    G
Sbjct: 537 DMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCG 596

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGA 388
            +++A  +   ++   D+V +  ++G 
Sbjct: 597 SVKDARQVFDRMTQ-RDIVAYNAMIGG 622



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 156/317 (49%), Gaps = 3/317 (0%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIH 131
           + + +NA++ G         A+   R+M +        T    L +C    AL    +IH
Sbjct: 208 TVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIH 267

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
              ++   L D  +   +L++YAK G I  A++VFD+M  + + SW  +I G A    + 
Sbjct: 268 VEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSE 327

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
            A ++F++M+ EGV  PN +T +  L A     A K G  +H +I     + ++ V  A+
Sbjct: 328 IAFEIFQKMQQEGVV-PNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTAL 386

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           + MYAKCG      +VF+ +   + L+ WNTM+   A  G+   A E++ QM R G+ P+
Sbjct: 387 VKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPN 445

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
            ++Y+  L AC +   +  G  + + +   G   ++    +++ +  R G +++A  ++ 
Sbjct: 446 KITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDA-RLLF 504

Query: 372 SVSMGTDMVLWQTLLGA 388
           +  +  D++ W  ++G 
Sbjct: 505 NKMVRKDIISWTAMIGG 521



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 159/310 (51%), Gaps = 6/310 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG--VR 172
           LK C  V  L    ++H H+++H  + D      L+++Y + G I  A++V++++    R
Sbjct: 148 LKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTER 207

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
            + SWNA++ G  Q     EA+ L + M+  G       T +  L++C    A + G +I
Sbjct: 208 TVHSWNAMVVGYVQYGYIEEALKLLREMQQHG-LALGRATTMRLLSSCKSPSALECGREI 266

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H    + RL  +V V N +++MYAKCG + +A EVFD ++  KS+V+W  ++  +A  G 
Sbjct: 267 HVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMET-KSVVSWTIIIGGYADCGH 325

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
              A E+F++M + GV P+ ++Y+  L A +    +  G  + + + N G + ++    +
Sbjct: 326 SEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTA 385

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASRKLVEMGSN 411
           +V +  + G  ++ C  V    +  D++ W T++G     G+ E A EI  +   E    
Sbjct: 386 LVKMYAKCGSYKD-CRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMP 444

Query: 412 NCGDFVLLSN 421
           N   +V+L N
Sbjct: 445 NKITYVILLN 454



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A+D+ + ++ +G  + N    +  L  C  +     G ++HE+I +    ++    NA+I
Sbjct: 125 AMDVVQYLQQQGA-RVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 253 DMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           +MY +CG +++A +V++ +    +++ +WN MV+ +  +G    AL+L  +M + G+   
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALG 243

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
             + +  L +C     ++ G  +        +  ++     ++++  + G + EA ++  
Sbjct: 244 RATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVEMAEIA 401
            +   + +V W  ++G    Y D   +EIA
Sbjct: 304 KMETKS-VVSWTIIIGG---YADCGHSEIA 329


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/589 (39%), Positives = 356/589 (60%), Gaps = 18/589 (3%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAH--LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           L A L  C+S  A++ +H   ++A   L     F ++L  +     E  A +P + LAYA
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTL---CTEQGAEAPAH-LAYA 86

Query: 62  HALFRQINAPSTND---FNAVLRGLAHSSK----PTNAVLWYRQMLRGSHRSDALTCSFA 114
             +F +I  P   D   +N +LRG A           A   + +M+      D  T    
Sbjct: 87  RQVFDRI--PHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSL 144

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           LKACA   A  E  Q H   ++ G      +  TL+++YA+ G++ +A+ +FD M    +
Sbjct: 145 LKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECV 204

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            S+NA+I    + +L  EA+ LF+ M+ +G+ KP  VT++  L+AC  LGA + G  IH+
Sbjct: 205 VSYNAMITASVRSSLPGEALVLFREMQAKGL-KPTSVTLISVLSACALLGALELGRWIHD 263

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           YIR+ RLD  V V  A+IDMYAKCG L+ A  VF +++ R     W+ M++A+A HG G 
Sbjct: 264 YIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQ-AWSVMMVAYANHGYGR 322

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            A+ +FE+M + G+KPDDV++L  L AC+H+G+V +G++ F+SM   G+   +KHYG V 
Sbjct: 323 EAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVT 382

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLL R+G+L+ A   +  + +    +LW+TLL AC  +GDV+M +    +++E+  ++ G
Sbjct: 383 DLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGG 442

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
           D+V+ SNL A   RW+++  VRK M  + V KVPG S IE+  ++H+FF  D SH   +E
Sbjct: 443 DYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQE 502

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
               +DE++ ++K  GY   TS V H ++GEEEK  +L YHSEKLA++FGL++T+  T++
Sbjct: 503 ARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTL 562

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++ KNLR+C DCH + KL+S V+NR II+RD  RFH F+DG CSC DYW
Sbjct: 563 RIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/611 (39%), Positives = 354/611 (57%), Gaps = 50/611 (8%)

Query: 18  SHIH----IKQLQ---AHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINA 70
           +H+H    +KQ     + +  TG F S  F   S++++F   SP   L Y+  +F +I  
Sbjct: 34  THLHNCHNLKQFNRILSQMILTG-FISDTFAA-SRLLKFSTDSPFIGLDYSLQIFDRIEN 91

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
            +   +N ++R    S+    A+L Y+ M++ +   D  T    ++ACA  L  F   +I
Sbjct: 92  SNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEI 151

Query: 131 HSHVLRHGFLADALLGTTLLDVYA----------------------------------KV 156
           H HVL+ GF +D  +  TL+++YA                                   +
Sbjct: 152 HDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDM 211

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
           G+++ A K+F+EM  +D+ SW+ALI+G  Q  +  EA+ +F  M   G+ + +EV V+  
Sbjct: 212 GQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGM-RLDEVVVVSV 270

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI----DMYAKCGLLDKAFEVFDNIK 272
           L+AC HL   K G  IH  +    ++  V + NA+I    DMY KCG ++ A EVF+ ++
Sbjct: 271 LSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGME 330

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K + +WN +++  AV+G   R+L++F +M   GV P++++++  L AC H GLVD+G 
Sbjct: 331 -EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGR 389

Query: 333 RLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             F SM    G++PN+KHYG +VDLLGRAG L EA  +++S+ M  D+  W  LLGAC+ 
Sbjct: 390 CHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKK 449

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           +GD EM E   RKL+E+  ++ G  VLLSN++A+   W+DV  VR  MK + V K PG S
Sbjct: 450 HGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCS 509

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
            IE  GV+H+F   DK+H    ++   L+E+  ++K  GYA  T+ V  DI EEEKE  L
Sbjct: 510 LIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTL 569

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
             HSEKLA+AFGL++ S  T I++ KNLRIC DCH   KLISK Y REI+VRDR RFH F
Sbjct: 570 FRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYF 629

Query: 572 KDGACSCKDYW 582
           K+GACSC DYW
Sbjct: 630 KEGACSCMDYW 640


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/646 (36%), Positives = 362/646 (56%), Gaps = 76/646 (11%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE-LAYAHAL 64
           A+L   ++    S  H+KQ  A +  TG  Q     +   +++ YA    N  L++  +L
Sbjct: 35  AILHLLNTQCTTSLHHLKQAHALILRTGHLQDSY--IAGSLVKSYANVSTNRYLSFESSL 92

Query: 65  --FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
             F  +  P+   +N +++    +++P  A+L Y +M+    R +  T    LKAC+   
Sbjct: 93  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSG 152

Query: 123 ALFETLQIHSHVLRHGF--------------------------------LADALLGTTLL 150
            + E +Q+H+H+++HG                                   DA+    ++
Sbjct: 153 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 212

Query: 151 DVYAKVGEIVSAKKVF--------------------------------DEMGVRDIASWN 178
           D Y + GE+ +A+++F                                DEM  RD  SW+
Sbjct: 213 DGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWS 272

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           A+I G  Q     EA+++F +M+ E + +P +  +   L+AC +LGA  +G  IH Y + 
Sbjct: 273 AMIDGYIQEGCFMEALEIFHQMQKEKI-RPRKFVLPSVLSACANLGALDQGRWIHTYAKR 331

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             + ++ V+  +++DMYAKCG +D A+EVF+ +   K + +WN M+   A+HG    A++
Sbjct: 332 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDAID 390

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLL 357
           LF +M    + P++++++  L AC H GLV  G+ +FNSM    GV+P ++HYG +VDLL
Sbjct: 391 LFSKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLL 447

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           GRAG L EA  +V S+       +W  LLGAC+ +G+VE+ E   + L+E+   N G + 
Sbjct: 448 GRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYT 507

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG-GVIHKFFTSDKSHVKWREIY 476
           LLSN+YA   RW++VG VRK MK R +K  PG S I++G G +HKF   D SH + ++IY
Sbjct: 508 LLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIY 567

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
           + LD++  +++  GY    S VL DI EEEKE A+  HSEKLA+ FGLI+TS  T+I++ 
Sbjct: 568 QMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIV 627

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+C DCH   KLIS+VYNREIIVRDR+R+H F++GACSCKD+W
Sbjct: 628 KNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/568 (39%), Positives = 349/568 (61%), Gaps = 15/568 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFY--ALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           +QL      +G F S  F   S ++  Y     P++    A   F +I +P+     A+ 
Sbjct: 109 RQLHLLAIRSGLFPSDPFSA-SALLHMYNHCSRPID----ARKAFDEIPSPNPVIITAMA 163

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRS--DALTCSFALKACARVLALFETLQIHSHVLRHG 138
            G   ++    ++  +R+++     +  D      A  A AR+     T  +H+ V++ G
Sbjct: 164 SGYVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTG 223

Query: 139 FLADALLGTTLLDVYAKVG--EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
              DA +  T+LD YAK G  ++ +A+KVFD M  +D+ SWN++IA  AQ  ++++A+ L
Sbjct: 224 LDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGL 282

Query: 197 FKRM-KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +++M  + G  K N VT+   L AC H G  + G  IH  +    L+ NV V  +V+DMY
Sbjct: 283 YRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMY 342

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCG ++ A + F  IK  K++++W+ M+  + +HG G  AL++F +M R+G  P+ +++
Sbjct: 343 SKCGRVEMARKAFQKIK-EKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITF 401

Query: 316 LAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           ++ L AC+HAGL+D G   +N+M    G++P ++HYG +VDLLGRAG L EA  ++K + 
Sbjct: 402 ISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMK 461

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +  D  +W  LL AC+++ +VE+AEI++++L E+ + NCG +VLLSN+YA    W DV R
Sbjct: 462 VKPDAAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVER 521

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R  +K R ++K PG+S +E+ G  H F+  DKSH + +EIY  L +++ K++E GY   
Sbjct: 522 MRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPN 581

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T  VLHD+ EEEK +AL  HSEKLA+AF L+++   + I V KNLR+C DCH  IKLI+K
Sbjct: 582 TGSVLHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITK 641

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +  REIIVRD  RFH FKDG+CSC DYW
Sbjct: 642 IAQREIIVRDLQRFHHFKDGSCSCGDYW 669


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/491 (43%), Positives = 313/491 (63%), Gaps = 5/491 (1%)

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
           +Y  MLR        + S  L++CA           H  +++ GF  D +L T LLD YA
Sbjct: 17  FYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYA 76

Query: 155 KVGEIVSAKKVFDEMGVRDIAS--WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           K G +  A+ +FD M  R+  S  WN +I+   Q      A+ +F++M+ E V KP EVT
Sbjct: 77  KHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENV-KPTEVT 135

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           ++  L+AC HLGA   G+ IH YIR +RL ++VV+ NA+IDMY KCG L+ A +VF  + 
Sbjct: 136 MVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLS 195

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
            RK++  WN++++   ++G G  A+  F  M + G+KPD V+++  L  C+H+GL+  G 
Sbjct: 196 -RKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQ 254

Query: 333 RLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           R F+ M    G++P ++HYG +VDLLGRAG L+EA ++++++ M  + ++  +LL ACQ+
Sbjct: 255 RYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQI 314

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           + D ++ E  +++L+E+   + G++V LSNLYA+  RWDDV   RK M  R V K PG S
Sbjct: 315 HKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCS 374

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
            IEV  ++H+F   D SH ++ +I   LDEI  ++K  G+   T+ VLHDI EEEKE A+
Sbjct: 375 SIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAI 434

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
            YHSE++AVAFGL+ST    +I+V KNLR C DCH  +KLIS  + REIIVRDR RFH F
Sbjct: 435 RYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHF 494

Query: 572 KDGACSCKDYW 582
           ++G+CSC DYW
Sbjct: 495 RNGSCSCNDYW 505



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 125/265 (47%), Gaps = 6/265 (2%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTND--FNAVLRGLAHSSKPTNAVLWYRQM 99
           +++ +++FYA     E   A  LF  +   ++N   +N ++       +   A+  ++QM
Sbjct: 67  LQTGLLDFYAKHGYVE--EARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQM 124

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
              + +   +T    L ACA + AL     IH ++       D +LG  L+D+Y K G +
Sbjct: 125 QSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGAL 184

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
            +A  VF  +  ++I  WN++I GL       EA+  F  M+ EG+ KP+ VT +G L+ 
Sbjct: 185 EAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGI-KPDGVTFVGILSG 243

Query: 220 CGHLGAWKEGDK-IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           C H G    G +   E +    L+  V     ++D+  + G L +A E+   +  + + +
Sbjct: 244 CSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSM 303

Query: 279 TWNTMVMAFAVHGDGPRALELFEQM 303
              +++ A  +H D     ++ +Q+
Sbjct: 304 VLGSLLRACQIHKDTKLGEQVTQQL 328


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/525 (40%), Positives = 332/525 (63%), Gaps = 5/525 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F +I       +NA++ G A +     A+  +++M++ + R D  T    L ACA+
Sbjct: 151 AQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQ 210

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             ++    Q+HS +  HGF ++  +   L+D+Y+K G++ +A  +F+ +  +D+ SWN L
Sbjct: 211 SRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTL 270

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G    NL  EA+ LF+ M   G   PN+VT++  L AC HLGA   G  IH YI ++ 
Sbjct: 271 IGGYTHMNLYKEALLLFQEMLRSGE-SPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKL 329

Query: 241 LDMNVVVC--NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            D+        ++IDMYAKCG ++ A +VF+++   KSL +WN M+  FA+HG      +
Sbjct: 330 KDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMIFGFAMHGRANAGFD 388

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           LF +M + G++PDD++++  L AC+H+G +D G  +F SM  +  + P ++HYG ++DLL
Sbjct: 389 LFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLL 448

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           G +G  +EA +++K++ M  D V+W +LL AC+ +G++E+AE  +R L+++   N G +V
Sbjct: 449 GHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYV 508

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YA    WD+V +VR  +  + +KKVPG S IE+   +H+F   DK H + REIY 
Sbjct: 509 LLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYG 568

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            L+E+   ++E G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   T + + K
Sbjct: 569 MLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 628

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+CR+CH+  KL+SK+Y REII RDR RFH F+DG CSC D+W
Sbjct: 629 NLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 206/386 (53%), Gaps = 41/386 (10%)

Query: 44  SKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG 102
           SK++EF  LSP  +   YA ++F  I  P+   +N +LRG A SS P +A+  Y  M+  
Sbjct: 1   SKLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISL 60

Query: 103 SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK------- 155
               ++ T  F LK+CA+  A  E  QIH HVL+ G+  D  + T+L+ +YA+       
Sbjct: 61  GLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDA 120

Query: 156 ------------------------VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
                                    G I SA+++FDE+ V+D+ SWNA+I+G A+     
Sbjct: 121 HKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYK 180

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           EA++LFK M M+   +P+E T++  L+AC    + + G ++H +I +     N+ + NA+
Sbjct: 181 EALELFKEM-MKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNAL 239

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           ID+Y+KCG ++ A  +F+ + C K +V+WNT++  +        AL LF++M R+G  P+
Sbjct: 240 IDLYSKCGQVETACGLFEGLSC-KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 298

Query: 312 DVSYLAALCACNHAGLVDDG----VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
           DV+ ++ L AC H G +D G    V +   + +    P+++   S++D+  + G ++ A 
Sbjct: 299 DVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAH 356

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYG 393
            +  S+ +   +  W  ++    ++G
Sbjct: 357 QVFNSM-LHKSLSSWNAMIFGFAMHG 381


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 337/574 (58%), Gaps = 36/574 (6%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           + + ++ FY      +L+ A  LF+ I+      +N+++   A  + P +A+  + +M R
Sbjct: 163 ILNSLVRFYG--ACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMER 220

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
            +   +++T    L ACA+ L L     + S++ R G   D  L   +LD+Y K G +  
Sbjct: 221 ENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDD 280

Query: 162 AKKVFDEMGVRD-------------------------------IASWNALIAGLAQGNLA 190
           A+K+FDEM  RD                               IA+WN LI+   Q    
Sbjct: 281 AQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKP 340

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
            EA+ +F  +++  + KP+EVT++  L+AC  LGA   G  IH YI+ E + +N  + ++
Sbjct: 341 KEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISS 400

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           ++DMYAKCG L+KA EVF +++ R   V W+ M+    +HG G  A++LF +M  A VKP
Sbjct: 401 LVDMYAKCGSLEKALEVFYSVEERDVYV-WSAMIAGLGMHGRGKAAIDLFFEMQEAKVKP 459

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           + V++   LCAC+HAGLVD+G   F+ M    GV P MKHY  +VD+LGRAG L+EA ++
Sbjct: 460 NSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMEL 519

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW 429
           +  +S      +W  LLGAC L+ +VE+ E+AS +L+++   N G  VLLSN+YA   RW
Sbjct: 520 INEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRW 579

Query: 430 DDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEY 489
           + V  +RK M++ ++KK PG S IE  G +H+F   D +H     IY KL+EI  K+K  
Sbjct: 580 EKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSV 639

Query: 490 GYAAGTSCVLHDIGEEE-KENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDV 548
           GY    S +L  I E++ KE AL  HSEKLA+AFGL++ + +  I+V KNLRIC DCH  
Sbjct: 640 GYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAF 699

Query: 549 IKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KL+S+VY+R+I++RDR RFH F+DG CSC DYW
Sbjct: 700 AKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 203/418 (48%), Gaps = 41/418 (9%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQ 67
           + KCSS+  +  +H + L+  L       SKLF          ALS  + L YA  LF Q
Sbjct: 32  IDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTAS-------ALSSFSTLDYARNLFDQ 84

Query: 68  INAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFE 126
           I  P+   +N ++R  A SS P  + + +  +L +     +  T  F +KA + + A   
Sbjct: 85  IPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRV 144

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
              +H   ++  F  D  +  +L+  Y   G++  A+++F  +  +D+ SWN++I+  AQ
Sbjct: 145 GTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQ 204

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
           GN   +A++LF +M+ E V  PN VT++G L+AC      + G  +  YI  + + +++ 
Sbjct: 205 GNCPEDALELFLKMERENVM-PNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLT 263

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCR------------------------------KS 276
           +CNA++DMY KCG +D A ++FD +  R                              K 
Sbjct: 264 LCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKE 323

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPDDVSYLAALCACNHAGLVDDGVRLF 335
           +  WN ++ A+  +G    AL +F ++  + + KPD+V+ ++ L AC   G +D G  + 
Sbjct: 324 IAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIH 383

Query: 336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
             +   G+  N     S+VD+  + G L++A ++  SV    D+ +W  ++    ++G
Sbjct: 384 VYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE-ERDVYVWSAMIAGLGMHG 440


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/603 (37%), Positives = 358/603 (59%), Gaps = 38/603 (6%)

Query: 14  NGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPST 73
           +  ++   ++Q+ A L   G  +     +    ++  ALS    L YA+ +  +   P+ 
Sbjct: 14  DSGITFKEVRQIHAKLYVDGTLKDD--HLVGHFVKAVALSDHKYLDYANQILDRSEKPTL 71

Query: 74  NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKACARVLALFETLQIH 131
              N+++R    S  P  +  +YR++L   +  + D  T +F ++AC  +      LQ+H
Sbjct: 72  FALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVH 131

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVG-------------------------------EIV 160
              +R GF  D  + T L+ +YA++G                               ++V
Sbjct: 132 GMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVV 191

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
            A+K+F+ M  RD  +WNA+I+G AQ   + EA+++F  M++EGV K N V ++  L+AC
Sbjct: 192 FARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGV-KVNGVAMISVLSAC 250

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
             LGA  +G   H YI   ++ + V +   ++D+YAKCG ++KA EVF  ++  K++ TW
Sbjct: 251 TQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGME-EKNVYTW 309

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           ++ +   A++G G + LELF  M + GV P+ V++++ L  C+  G VD+G R F+SM N
Sbjct: 310 SSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRN 369

Query: 341 -CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             G++P ++HYG +VDL  RAGRL++A  I++ + M     +W +LL A ++Y ++E+  
Sbjct: 370 EFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGV 429

Query: 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
           +AS+K++E+ + N G +VLLSN+YA    WD+V  VR++MK++ V+K PG S +EV G +
Sbjct: 430 LASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEV 489

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H+FF  DKSH K+ +I     +I  +++  GY A T+ V+ DI EEEKE+ALC HSEK A
Sbjct: 490 HEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAA 549

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +AFG++S  E   I++ KNLR+C DCH V  +ISK++NREIIVRDR RFH FKDG CSC 
Sbjct: 550 IAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCN 609

Query: 580 DYW 582
            +W
Sbjct: 610 GFW 612


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/562 (41%), Positives = 329/562 (58%), Gaps = 52/562 (9%)

Query: 56  NELAYAHALFR-QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           N L  AH   R Q   P+ +  +  +R   H  +P                 D  T  F 
Sbjct: 28  NTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQP-----------------DFHTFPFL 70

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L++ A    L     +H+ +LR G   D  + T+L+ +Y+  G +  A++VFDE+   D+
Sbjct: 71  LQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDL 130

Query: 175 ASWNALI-----AGL-----------AQGNLAS---------------EAVDLFKRMKME 203
            SWN++I     AGL            + N+ S               EA+ LF+ M+M 
Sbjct: 131 PSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQML 190

Query: 204 GV--FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           GV   +PNE T+ G LAACG LGA + G   H YI +  + ++VV+  A+IDMYAKCG +
Sbjct: 191 GVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSV 250

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           +KA  VF N+   K ++ W+ M+   A+HG     + LF +M   GV+P+ V++LA  CA
Sbjct: 251 EKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCA 310

Query: 322 CNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C H GLV +G      M  +  + P ++HYG +VDL GRAGR++EA ++VKS+ M  D++
Sbjct: 311 CVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVL 370

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +W  LL   +++GD+E  E+A +KL+E+   N G +VLLSN+YA   RW+DV  VR  M+
Sbjct: 371 VWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLME 430

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
              +KKVPG S IEVGGV+H+FF  D SH + R+I+  L+EI+ ++K  GY   T  VL 
Sbjct: 431 TMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLL 490

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           D+ EE KE AL  HSEKLA+A+G + TS  T I++ KNLRICRDCH  IK+ISKV++REI
Sbjct: 491 DLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREI 550

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           IVRD  RFH F  G CSC+DYW
Sbjct: 551 IVRDCNRFHHFTQGLCSCRDYW 572


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/618 (39%), Positives = 359/618 (58%), Gaps = 51/618 (8%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           + L++L+  C S        IKQ  A+L TT Q    L  + +K ++  AL+    L YA
Sbjct: 180 SKLSSLIDLCKSIN-----QIKQTHANLITTAQI--TLPVIANKFLKNVALA---SLTYA 229

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKP---TNAVLWYRQMLRGS-HRSDALTCSFALKA 117
           H LF QI  P    +N +++  +HS  P    +++  +R ++R S +  +  +  FA  A
Sbjct: 230 HKLFDQIPQPDLFIYNTMIK--SHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGA 287

Query: 118 CARVLALFETLQIHSHVLRHG-----FLADALLG-------------------------- 146
           C   + + E  Q+ +H ++ G     F+ +AL+G                          
Sbjct: 288 CGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSW 347

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            T++  Y   G +V AK++FDEM  RD+ SW+ +IAG  Q     EA+D F +M ++   
Sbjct: 348 NTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKM-LQSEV 406

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           KPNE T++ ALAAC +L A  +G  IH YIR + + MN  +  ++IDMYAKCG +D A  
Sbjct: 407 KPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASS 466

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF   K ++ +  WN M+  FA+HG    A+ +FE+M    V P+ V+++A L AC+H  
Sbjct: 467 VFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGY 526

Query: 327 LVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           +V +G   F  MA + G+ P ++HYG +VDLL R+G L+++ +++ S+ M  D+ +W  L
Sbjct: 527 MVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGAL 586

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK-NRDV 444
           L AC++Y D+E      R + E+  N+ G  VLL N+Y+   RW++   VR+  + N D 
Sbjct: 587 LNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDR 646

Query: 445 KKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
           KK+PGFS IE+ GV H+F   D+SH + REIY  LDE++ K+K  GY      VL D  +
Sbjct: 647 KKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDD 706

Query: 505 EE-KENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
           EE KE AL  HSEKLA+AFGL++T+  T I++ KNLR+C DCH   K ISKVY+R IIVR
Sbjct: 707 EEDKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVR 766

Query: 564 DRVRFHRFKDGACSCKDY 581
           DR+R+H FKDG CSCKDY
Sbjct: 767 DRMRYHHFKDGICSCKDY 784


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/539 (41%), Positives = 326/539 (60%), Gaps = 5/539 (0%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +I  YA     EL  A  +F Q+       +N++L     + KP  A+  Y +M      
Sbjct: 281 LINMYA--KFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVV 338

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRH-GFLADALLGTTLLDVYAKVGEIVSAKK 164
            D LT        A +     +  IH  V R   FL D  LG  ++D+YAK+G I SA+K
Sbjct: 339 PDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARK 398

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VF+ + V+D+ SWN+LI G +Q  LA+EA+D++  M+      PN+ T +  L A   LG
Sbjct: 399 VFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLG 458

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A K+G K H  + +  L  ++ V   ++DMY KCG L  A  +F  +   +S V+WN ++
Sbjct: 459 ALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVP-HQSSVSWNAII 517

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GV 343
               +HG G +A++LF++M   GVKPD +++++ L AC+H+GLVD+G   F  M    G+
Sbjct: 518 SCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGI 577

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
           +P++KHYG +VDL GRAG L++A + VK++ +  D+ +W  LLGAC+++ +VE+    S 
Sbjct: 578 RPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSD 637

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
            L+++ S N G +VLLSN+YA    W+ V  VR   ++R +KK PG+S IEV   I  F+
Sbjct: 638 HLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFY 697

Query: 464 TSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFG 523
           T +++H K  EIY +L  +  K+K  GY    + VL D+ ++EKEN L  HSE+LA+AFG
Sbjct: 698 TGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAFG 757

Query: 524 LISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +IST   T++Q+FKNLR+C DCH+  K ISK+  REIIVRD  RFH FKDG CSC DYW
Sbjct: 758 IISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 185/373 (49%), Gaps = 15/373 (4%)

Query: 18  SHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF 76
           + +H+ KQL A L  +G+ QS    + +K+I  YA   L ++ +A   F QI       +
Sbjct: 54  TKVHLAKQLHALLVVSGKTQSIF--LSAKLINRYAF--LGDIPHARLTFDQIQTKDVYTW 109

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHVL 135
           N+++   A       AV  + + L  S  +SD  T    ++AC     L +  ++H  VL
Sbjct: 110 NSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGN---LDDGRKVHCLVL 166

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + GF  D  +  + +  Y++ G +  A  +FD M +RDI +WNA+I+G       +EA++
Sbjct: 167 KLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALE 226

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +F  M+ + V   + VT+   L  C  L     G  IH Y  +  L+ ++ VCNA+I+MY
Sbjct: 227 VFDEMRFKSV-SMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMY 285

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AK G L  A  +F+ +K R  +V+WN+++ AF  +     AL ++ +M   GV PD ++ 
Sbjct: 286 AKFGELRSAETIFNQMKVR-DIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTL 344

Query: 316 LAALCACNHAG--LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
           ++        G  L    +  F +   C    ++    +++D+  + G +  A  + + +
Sbjct: 345 VSLASVAAELGNFLSSRSIHGFVT-RRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGL 403

Query: 374 SMGTDMVLWQTLL 386
            +  D++ W +L+
Sbjct: 404 PV-KDVISWNSLI 415



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 179/354 (50%), Gaps = 7/354 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           + +  I FY  S    ++ A  LF  +       +NA++ G   + K   A+  + +M  
Sbjct: 176 IAASFIHFY--SRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRF 233

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
            S   D++T S  L  C ++  +   + IH + ++ G   D  +   L+++YAK GE+ S
Sbjct: 234 KSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRS 293

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+ +F++M VRDI SWN+L+A   Q      A+ ++ +M   GV  P+ +T++   +   
Sbjct: 294 AETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVV-PDLLTLVSLASVAA 352

Query: 222 HLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
            LG +     IH ++ R      ++ + NA+IDMYAK G +D A +VF+ +   K +++W
Sbjct: 353 ELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPV-KDVISW 411

Query: 281 NTMVMAFAVHGDGPRALELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           N+++  ++ +G    A++++  M   +G  P+  ++++ L A +  G +  G++    + 
Sbjct: 412 NSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLI 471

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
              +  ++     +VD+ G+ G+L +A  +   V   +  V W  ++    L+G
Sbjct: 472 KNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSS-VSWNAIISCHGLHG 524


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/581 (38%), Positives = 344/581 (59%), Gaps = 11/581 (1%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           N LL +C +  AV     +++ AH+  T          R  I+     +    L  A  +
Sbjct: 14  NMLLNECVNKRAVREG--QRVHAHMIKTCYLPPVYLSTRLIIL----YTKCECLGCARHV 67

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F ++   +   + A++ G +     + A+  + QMLR     +  T +  L +C      
Sbjct: 68  FDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGF 127

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               QIHSH+ +  +     +G++LLD+YAK G I  A+ VF+ +  RD+ S  A+I+G 
Sbjct: 128 ELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 187

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           AQ  L  EA++LF R++ EG+   N VT    L A   L A   G ++H ++    L   
Sbjct: 188 AQLGLDEEALELFCRLQREGM-SSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFY 246

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           VV+ N++IDMY+KCG L+ A ++F+N+  R ++++WN M++ ++ HG G   ++LF+ M 
Sbjct: 247 VVLQNSLIDMYSKCGNLNYARKIFNNMPVR-TVISWNAMLVGYSKHGKGIEVVKLFKLMR 305

Query: 305 RAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG--VKPNMKHYGSVVDLLGRAG 361
               VKPD V++LA L  C+H GL D G+ +F+ M N G  ++  ++HYG V+DLLGRAG
Sbjct: 306 EENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAG 365

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           R++EA +++K +       +W +LLGAC+++ +  + E    +L+E+   N G++V+LSN
Sbjct: 366 RVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSN 425

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           LYA+  RW+DV  VR+ M  + V K PG S+IE+   IH F+ SD+SH +  E++ K+ E
Sbjct: 426 LYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRE 485

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           ++ K KE GY    SCVL+D+ EE+KE  L  HSEKLA+AFGLISTSE   ++V KNLRI
Sbjct: 486 LLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRI 545

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH+  K +SKVY R++ +RD+ RFH    G CSC DYW
Sbjct: 546 CVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/564 (39%), Positives = 344/564 (60%), Gaps = 8/564 (1%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           +++Q+ AH+  +G  +S+   + +K+I     +    + YA  LF  +  P +  F+++L
Sbjct: 42  NLQQVHAHIIVSGLHRSR--SLLTKLISLVCTA--GSITYARRLFPTVPNPDSFLFDSLL 97

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           +  +      + VL+YR+ML         T +  +KACA + AL    +IHSHV+  G+ 
Sbjct: 98  KVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYG 157

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
           +D  +   L+ +YAK  ++  AKKVFD M  R I +WN+LI+G  Q  L  E++ LF  M
Sbjct: 158 SDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLM 217

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
            ME  F+P+  T++  L++C  LGA   G  +H+Y      D+NVV+  ++I+MY +CG 
Sbjct: 218 -MESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGN 276

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           + KA EVFD++K R ++VTW  M+  + +HG G +A+ELF +M   G +P++++++A L 
Sbjct: 277 VSKAREVFDSMKER-NVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLS 335

Query: 321 ACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKS-VSMGTD 378
           AC H+GL+DDG R+F+SM    G+ P ++H   +VD+ GRAG L +A   +K  +     
Sbjct: 336 ACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPG 395

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
             +W ++LGAC+++ + ++    +  ++ +   N G +V+LSN+YA   R D V  VR  
Sbjct: 396 PAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNM 455

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           M  R +KK  G+S IE+    + F   DKSH +   IY  LDE+M +  E GY      +
Sbjct: 456 MTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESL 515

Query: 499 LHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNR 558
           +HD+ EEE++ AL YHSEKLA+AFGL+ T++  +I++ KNLRIC DCH  IK IS + +R
Sbjct: 516 MHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADR 575

Query: 559 EIIVRDRVRFHRFKDGACSCKDYW 582
           EIIVRD+ RFH FKDG+CSC DYW
Sbjct: 576 EIIVRDKFRFHHFKDGSCSCLDYW 599


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/507 (41%), Positives = 328/507 (64%), Gaps = 3/507 (0%)

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N+++R     +K  N++  +  M + S   D+ T    LKA A++        IH  V++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            GF+ D    T L+ +Y     I  A ++FDEM  R+  +WNALI G        +A+D 
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           F+ M  +G  +P+E TV+  L+AC HLGA+ +G  IHE+I   RL +NV V  A+IDMYA
Sbjct: 178 FRGMLADGA-QPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYA 236

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG + +  +VF+ I+  K++ TWN ++  +A++G G  AL+ F +M     KPD+V++L
Sbjct: 237 KCGAVYEVEKVFEEIR-EKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFL 295

Query: 317 AALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
             LCAC H GLV +G   F SM    G++P ++HYG +VDLLGRAG L+EA ++++S+S+
Sbjct: 296 GVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI 355

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
             D ++W+ LL AC+++G+ ++ E   ++L+E+  NN  ++VLLSN+Y+   RW +VG++
Sbjct: 356 EPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKL 415

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           R  M  R ++KVPG S IE+  V+++F  S+    ++  IY++LD ++ K+KE GY  GT
Sbjct: 416 RGMMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGT 475

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
              L+DI +EEKE+++ YHSEKLA+AFGL+++    ++++ KNLRIC DCH+  K++S V
Sbjct: 476 DMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLV 535

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
           Y R I+VRDR RFH F +G CSC+DYW
Sbjct: 536 YKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 2/233 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF ++   +   +NA++ G  H+ K   A+  +R ML    +    T    L AC+ 
Sbjct: 143 ASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSH 202

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + A  +   IH  +  +    +  +GT L+D+YAK G +   +KVF+E+  +++ +WN L
Sbjct: 203 LGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVL 262

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE- 239
           I+G A       A+  F RM ME  FKP+EVT LG L AC H G   EG      ++++ 
Sbjct: 263 ISGYAMNGQGDAALQAFSRMLMEN-FKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQF 321

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            L   +     ++D+  + GLL++A E+  ++      + W  ++ A  VHG+
Sbjct: 322 GLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGN 374


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/562 (38%), Positives = 338/562 (60%), Gaps = 5/562 (0%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           + Q+   + T     S +F V + +I  Y    L E A    +F  ++  + + +NA+L 
Sbjct: 226 LGQIIHGMATKMDLVSDVF-VGNALIAMYGKCGLVEEAVKR-VFDLMDTKTVSSWNALLC 283

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
           G A +S P  A+  Y QM       D  T    L AC+R+ +L    +IH   LR+G   
Sbjct: 284 GYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAV 343

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  +G +LL +Y   G+  +A+ +FD M  R + SWN +IAG +Q  L  EA++LF++M 
Sbjct: 344 DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQML 403

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            +G+ +P E+ ++    AC  L A + G ++H +  +  L  ++ V +++IDMYAK G +
Sbjct: 404 SDGI-QPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCI 462

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
             +  +FD ++  K + +WN ++  + +HG G  ALELFE+M R G+KPDD ++   L A
Sbjct: 463 GLSQRIFDRLR-EKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMA 521

Query: 322 CNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C+HAGLV+DG+  FN M N   ++P ++HY  VVD+LGRAGR+ +A  +++ +    D  
Sbjct: 522 CSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSR 581

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +W +LL +C+++G++ + E  + KL+E+      ++VL+SNL+A   +WDDV RVR  MK
Sbjct: 582 IWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMK 641

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
           +  ++K  G S+IEVGG +H F   D+   +  E+ E    +  KI   GY   T  VLH
Sbjct: 642 DIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLH 701

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           D+ EE+K   L  HSEKLA++FGL++T++   ++V+KNLRIC DCH+  K ISKV NR+I
Sbjct: 702 DLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDI 761

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           +VRD  RFH F+DG CSC DYW
Sbjct: 762 VVRDNKRFHHFRDGICSCGDYW 783



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 125/247 (50%), Gaps = 8/247 (3%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHV-LRHGFLADALLGTTLLDVYAKVG 157
           +L  + RS+A+     L+AC +   +    ++H  V     F  D +L T ++ +Y+  G
Sbjct: 98  VLDSAQRSEAM--GVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCG 155

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
               ++ VFD++  +++  WNA+++   +  L  +A+ +F  +      KP+  T+   +
Sbjct: 156 SPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVI 215

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
            AC  L     G  IH    +  L  +V V NA+I MY KCGL+++A +   ++   K++
Sbjct: 216 KACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTV 275

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN-----HAGLVDDGV 332
            +WN ++  +A + D  +AL+L+ QM  +G+ PD  +  + L AC+     H G    G 
Sbjct: 276 SSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGF 335

Query: 333 RLFNSMA 339
            L N +A
Sbjct: 336 ALRNGLA 342


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/597 (38%), Positives = 348/597 (58%), Gaps = 39/597 (6%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
            +KQ+QA +  T         + +K +       + +L YA  +F  I +P+T  +NA++
Sbjct: 3   QLKQIQAQMIKTAIITEP--KLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           R  ++S +P  A L Y+QML  S   ++ T  F L+AC  +LA+ E LQ+H  V++ GF 
Sbjct: 61  RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFG 120

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN---------------------- 178
           +D      LL VYA  GEI  A+++FD +  RD  SWN                      
Sbjct: 121 SDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDM 180

Query: 179 ---------ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
                    +LI+GL +   + EA+ L   M+  G F+ + V +   L AC +LGA  +G
Sbjct: 181 PLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAG-FELDGVAIASLLTACANLGALDQG 239

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC-RKSLVTWNTMVMAFA 288
             +H Y+    +D++ V+  A+++MY KCG +++A  VF  +K  +K +  W  M+  FA
Sbjct: 240 RWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFA 299

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC--GVKPN 346
           +HG G  ALE F +M R G++P+ +++ A L AC++ GLV++G  LF SM  C   V P+
Sbjct: 300 IHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSM-KCFYNVNPS 358

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
           ++HYG +VDLLGR+GRL EA +++K + M    V+W  LL AC ++ D  +       LV
Sbjct: 359 IEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLV 418

Query: 407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSD 466
           E+ S++ G ++ L+ + AA  +W +   VR  MK+  V   PG S + + G++H+F    
Sbjct: 419 EVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGH 478

Query: 467 KSHVKWREIYEKLDEIMFKIKE-YGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
           + H +  +I  KL +I  ++++  GY   T  +L D+  EEKE A+  HSEKLA+AFGLI
Sbjct: 479 QDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLI 538

Query: 526 STSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +T   T+I+V KNLRICRDCH V KL+S++Y+REII+RDRVRFH F+DG+CSCKDYW
Sbjct: 539 NTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/564 (39%), Positives = 344/564 (60%), Gaps = 8/564 (1%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           +++Q+ AH+  +G  +S+   + +K+I     +    + YA  LF  +  P +  F+++L
Sbjct: 106 NLQQVHAHIIVSGLHRSR--SLLTKLISLVCTA--GSITYARRLFPTVPNPDSFLFDSLL 161

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           +  +      + VL+YR+ML         T +  +KACA + AL    +IHSHV+  G+ 
Sbjct: 162 KVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYG 221

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
           +D  +   L+ +YAK  ++  AKKVFD M  R I +WN+LI+G  Q  L  E++ LF  M
Sbjct: 222 SDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLM 281

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
            ME  F+P+  T++  L++C  LGA   G  +H+Y      D+NVV+  ++I+MY +CG 
Sbjct: 282 -MESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGN 340

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           + KA EVFD++K R ++VTW  M+  + +HG G +A+ELF +M   G +P++++++A L 
Sbjct: 341 VSKAREVFDSMKER-NVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLS 399

Query: 321 ACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKS-VSMGTD 378
           AC H+GL+DDG R+F+SM    G+ P ++H   +VD+ GRAG L +A   +K  +     
Sbjct: 400 ACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPG 459

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
             +W ++LGAC+++ + ++    +  ++ +   N G +V+LSN+YA   R D V  VR  
Sbjct: 460 PAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNM 519

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           M  R +KK  G+S IE+    + F   DKSH +   IY  LDE+M +  E GY      +
Sbjct: 520 MTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESL 579

Query: 499 LHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNR 558
           +HD+ EEE++ AL YHSEKLA+AFGL+ T++  +I++ KNLRIC DCH  IK IS + +R
Sbjct: 580 MHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADR 639

Query: 559 EIIVRDRVRFHRFKDGACSCKDYW 582
           EIIVRD+ RFH FKDG+CSC DYW
Sbjct: 640 EIIVRDKFRFHHFKDGSCSCLDYW 663


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/480 (42%), Positives = 324/480 (67%), Gaps = 4/480 (0%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           R D +T    + ACA++  L     +HS+    G   +  +   +LD+Y K  +I SA++
Sbjct: 210 RPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQE 269

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VF+ +  +D+ SW ++++GLA+     EA+ LF++M++  + + +E+T++G L+AC   G
Sbjct: 270 VFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKI-ELDEITLVGVLSACAQTG 328

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A  +G  IH  I +  ++ ++V+  A++DMYAKCG +D A +VF  ++ R ++ TWN ++
Sbjct: 329 ALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALI 387

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGV 343
              A+HG G  A+ LF+QM    + PDDV+++A LCAC+HAGLVD+G+ +F +M N   +
Sbjct: 388 GGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQI 447

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
           +P M+HYG VVDLL RA ++ +A   ++++ +  + VLW TLLGAC+  G  ++AE   R
Sbjct: 448 EPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGR 507

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
           +++E+  ++CG +V+LSNLYA   +WD   ++RK MKN+ ++K PG S+IE+ G+IH+F 
Sbjct: 508 RVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFV 567

Query: 464 TSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
             D+SH++  +IY  ++E+  ++  + G+  GT+ VL DI EEEKE++L  HSEKLA+A 
Sbjct: 568 AGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIAL 627

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           GLIST   + I++ KNLR+C DCH  +K+ SKVYNREI+ RDR RFH FK+G+CSC D+W
Sbjct: 628 GLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 194/398 (48%), Gaps = 9/398 (2%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
           + +++ L   C+S       H   L+ HL     F SKL       I F ALS   +L Y
Sbjct: 11  LISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKL-------ISFLALSHSGDLNY 63

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF Q+  P     N ++RG A S  P  AV  Y  M+      D  T  F L ACAR
Sbjct: 64  ARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACAR 123

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + A+    + H  VL++GF +D  +   L+  Y   G    A  VFDE  VRD+ +WN +
Sbjct: 124 LGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIM 183

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I       L+ +A DL   M      +P+EVT++  + AC  LG  + G  +H Y +E  
Sbjct: 184 INAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELG 243

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           LD N+ V NA++DMY KC  ++ A EVF+ I+  K +++W +M+   A  G    AL LF
Sbjct: 244 LDENLRVNNAILDMYCKCDDIESAQEVFNRIR-EKDVLSWTSMLSGLAKSGYFQEALALF 302

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
           ++M    ++ D+++ +  L AC   G +D G  +   +    +  ++    ++VD+  + 
Sbjct: 303 QKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKC 362

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           G +  A  + + + +  ++  W  L+G   ++G  E A
Sbjct: 363 GSIDLALQVFRRMRV-RNVFTWNALIGGLAMHGHGEDA 399



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 151/308 (49%), Gaps = 13/308 (4%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + I++ Y     +++  A  +F +I       + ++L GLA S     A+  +++M  
Sbjct: 250 VNNAILDMYC--KCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQL 307

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D +T    L ACA+  AL +   IH  + +     D +L T L+D+YAK G I  
Sbjct: 308 NKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDL 367

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A +VF  M VR++ +WNALI GLA      +A+ LF +M+ + +  P++VT +  L AC 
Sbjct: 368 ALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLM-PDDVTFIALLCACS 426

Query: 222 HLGAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
           H G   EG  + + ++ + +++  +     V+D+  +   +D A    +N+  + + V W
Sbjct: 427 HAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLW 486

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGV--KPDDVSYLAALCACNHAGLV--DDGVRLFN 336
            T++ A    G      +L E++GR  +  +PD       L    +AG+   D  ++L  
Sbjct: 487 ATLLGACRSGGH----FDLAEKIGRRVIELEPDSCGRYVMLSNL-YAGVSQWDHALKLRK 541

Query: 337 SMANCGVK 344
            M N G++
Sbjct: 542 QMKNKGIE 549


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/597 (41%), Positives = 342/597 (57%), Gaps = 41/597 (6%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +Q  A +   G  Q   F + +K++  YA S   +L  A  +F +I+ PS+  +N+++R 
Sbjct: 97  QQAHAQIVLHG-LQPNAF-LAAKMVAMYASS--GDLDSAVVVFDRIDNPSSLLYNSIIRA 152

Query: 83  LAHSSKPTNAVLW---YRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
                           Y +M       D  T  F LK+CA +  +     +H   LR G 
Sbjct: 153 YTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGL 212

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL--------------- 184
             D  +G +L+D+Y K G I  A+K+FD+M VRD+ASWNALIAG                
Sbjct: 213 EGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFER 272

Query: 185 ----------------AQGNLASEAVDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWK 227
                            Q   A +A+ LF  M  +G   KPN VT++  L AC    A +
Sbjct: 273 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 332

Query: 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMA 286
            G +IH++     L +N  V  A+  MYAKC  L +A   FD I +  K+L+ WNTM+ A
Sbjct: 333 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 392

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKP 345
           +A HG G  A+ +FE M RAGV+PD V+++  L  C+H+GL+D G+  FN M     V+P
Sbjct: 393 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEP 452

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
            ++HY  VVDLLGRAGRL EA +++  + M     +W  LL AC+ + ++E+AE+A+R+L
Sbjct: 453 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRL 512

Query: 406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTS 465
             +  +N G++VLLSNLYA    W++V ++R  +K + +KK PG S+IE+ G  H F  +
Sbjct: 513 FVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGA 572

Query: 466 DKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
           DKSH + +EIY+ L+ +  KIK  GY   TS VLHDI EEEKE  L  HSEKLA+AFGL+
Sbjct: 573 DKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLL 632

Query: 526 STSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +T     ++V KNLRIC DCH   K ISK+Y REIIVRD  RFH FKDG+CSC DYW
Sbjct: 633 NTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 5/176 (2%)

Query: 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
           K G + H  I    L  N  +   ++ MYA  G LD A  VFD I    SL+ +N+++ A
Sbjct: 94  KLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLL-YNSIIRA 152

Query: 287 FAVHG---DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +  HG        LE + +M   G+  D+ +    L +C     V  G  +       G+
Sbjct: 153 YTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGL 212

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
           + +     S++D+  + G + +A  +   + +  DM  W  L+      G++ +AE
Sbjct: 213 EGDFYVGASLIDMYVKCGVIGDARKLFDKMIV-RDMASWNALIAGYMKEGEIGVAE 267


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/567 (38%), Positives = 346/567 (61%), Gaps = 6/567 (1%)

Query: 17  VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF 76
           +  + +K++  +    G  QS    V +  +  YA      L YA  +F  + +   + +
Sbjct: 414 IQFLKLKEIHGYALRHGFIQSDEL-VANAFVAGYA--KCGSLHYAEGVFCGMESKMVSSW 470

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           NA++ G   +  P  A+  Y  M       D  T +  L ACAR+ +L    +IH  +LR
Sbjct: 471 NALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLR 530

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
           +GF  D  +  +L+ +Y + G+I+ AK  FD M  +++  WN +I G +Q     +A+D+
Sbjct: 531 NGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDM 590

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           F +M    ++ P+E++++GAL AC  + A + G ++H +  +  L  +  V  ++IDMYA
Sbjct: 591 FHQMLSSKIW-PDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYA 649

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG ++++  +FD +   K  VTWN ++  + +HG G +A+ELF+ M  AG +PD V+++
Sbjct: 650 KCGCMEQSQNIFDRVHL-KGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFI 708

Query: 317 AALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           A L ACNHAGLV +G+     M +  G+KP ++HY  VVD+LGRAGRL EA ++V  +  
Sbjct: 709 ALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPD 768

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
             D  +W +LL +C+ Y D+++ E  + KL+E+G +   ++VL+SN YA   +WD+V ++
Sbjct: 769 KPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKM 828

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           R+ MK   ++K  G S+IE+GG + +F   D+S ++  +I +   E+  KI + GY   T
Sbjct: 829 RQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDT 888

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
           SCVLH++ E+EK   L  HSEKLA++FGL++T++ T+++V KNLRIC DCH+ IKL+SK+
Sbjct: 889 SCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKI 948

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
             REIIVRD  RFH FK+G CSC DYW
Sbjct: 949 DKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 163/323 (50%), Gaps = 18/323 (5%)

Query: 7   LLQKCSSNGAVSHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYAL--SPLNELAYAHA 63
           LLQ C   G   +I I +++   ++T+  FQ+ +  + ++++  Y++  SP +     +A
Sbjct: 99  LLQLC---GEYKNIEIGRKIHNFISTSPHFQNDVVLI-TRLVTMYSICDSPYDSCLVFNA 154

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVL 122
             R+    +   +NA+L G   +S   +AV  + +M+  +    D  T    +KAC  V 
Sbjct: 155 SRRK----NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            +     +H   L+   L+D  +G  L+ +Y K G + SA KVFD+M  R++ SWN+++ 
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 183 GLAQGNLASEAVDLFKRMKM--EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
              +  +  E+  LFK +    EG+  P+  T++  +  C   G  + G   H    +  
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLM-PDVATMVTVIPLCARQGEVRLGMVFHGLALKLG 329

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L   + V ++++DMY+KCG L +A  +FD  +  K++++WN+M+  ++   D   A EL 
Sbjct: 330 LCGELKVNSSLLDMYSKCGYLCEARVLFDTNE--KNVISWNSMIGGYSKDRDFRGAFELL 387

Query: 301 EQMG-RAGVKPDDVSYLAALCAC 322
            +M     VK ++V+ L  L  C
Sbjct: 388 RKMQMEDKVKVNEVTLLNVLPVC 410



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 6/296 (2%)

Query: 96  YRQMLRGSH--RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153
           ++ +L G      D  T    +  CAR   +   +  H   L+ G   +  + ++LLD+Y
Sbjct: 285 FKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMY 344

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           +K G +  A+ +FD    +++ SWN++I G ++      A +L ++M+ME   K NEVT+
Sbjct: 345 SKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTL 403

Query: 214 LGALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           L  L  C     + +  +IH Y +R   +  + +V NA +  YAKCG L  A  VF  ++
Sbjct: 404 LNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGME 463

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K + +WN ++     +G   +AL+L+  M  +G++PD  +  + L AC     +  G 
Sbjct: 464 -SKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGK 522

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            +  SM   G + +     S+V L  + G++  A     ++    ++V W T++  
Sbjct: 523 EIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNME-EKNLVCWNTMING 577



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 126/252 (50%), Gaps = 5/252 (1%)

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
           F  D +L T L+ +Y+       +  VF+    +++  WNAL++G  + +L  +AV +F 
Sbjct: 125 FQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFV 184

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            M     F P+  T+   + AC  +   + G+ +H +  + ++  +V V NA+I MY K 
Sbjct: 185 EMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKF 244

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYL 316
           G ++ A +VFD +  +++LV+WN+++ A   +G    +  LF+ +  G  G+ PD  + +
Sbjct: 245 GFVESAVKVFDKMP-QRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMV 303

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
             +  C   G V  G+         G+   +K   S++D+  + G L EA  +  +    
Sbjct: 304 TVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTNE-- 361

Query: 377 TDMVLWQTLLGA 388
            +++ W +++G 
Sbjct: 362 KNVISWNSMIGG 373


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/507 (41%), Positives = 328/507 (64%), Gaps = 3/507 (0%)

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N+++R     +K  N++  +  M + S   D+ T    LKA A++        IH  V++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            GF+ D    T L+ +Y     I  A ++FDEM  R+  +WNALI G        +A+D 
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           F+ M  +G  +P+E TV+  L+AC HLGA+ +G  IHE+I   RL +NV V  A+IDMYA
Sbjct: 178 FRGMLADGA-QPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYA 236

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG + +  +VF+ I+  K++ TWN ++  +A++G G  AL+ F +M     KPD+V++L
Sbjct: 237 KCGAVYEVEKVFEEIR-EKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFL 295

Query: 317 AALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
             LCAC H GLV +G   F SM    G++P ++HYG +VDLLGRAG L+EA ++++S+S+
Sbjct: 296 GVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI 355

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
             D ++W+ LL AC+++G+ ++ E   ++L+E+  NN  ++VLLSN+Y+   RW +VG++
Sbjct: 356 EPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKL 415

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           R  M  R ++KVPG S IE+  V+++F  S+    ++  IY++LD ++ K+KE GY  GT
Sbjct: 416 RGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGT 475

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
              L+DI +EEKE+++ YHSEKLA+AFGL+++    ++++ KNLRIC DCH+  K++S V
Sbjct: 476 DMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLV 535

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
           Y R I+VRDR RFH F +G CSC+DYW
Sbjct: 536 YKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 2/233 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF ++   +   +NA++ G  H+ K   A+  +R ML    +    T    L AC+ 
Sbjct: 143 ASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSH 202

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + A  +   IH  +  +    +  +GT L+D+YAK G +   +KVF+E+  +++ +WN L
Sbjct: 203 LGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVL 262

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE- 239
           I+G A       A+  F RM ME  FKP+EVT LG L AC H G   EG      ++++ 
Sbjct: 263 ISGYAMNGQGDAALQAFSRMLMEN-FKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQF 321

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            L   +     ++D+  + GLL++A E+  ++      + W  ++ A  VHG+
Sbjct: 322 GLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGN 374


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/526 (39%), Positives = 324/526 (61%), Gaps = 3/526 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  +  +F  ++  + + +NA+L G A +S P  A+  Y QM       D  T    L A
Sbjct: 358 LCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLA 417

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C+R+ +L    +IH   LR+G   D  +G +LL +Y   G+  +A+ +FD M  R + SW
Sbjct: 418 CSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSW 477

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N +IAG +Q  L  EA++LF++M  +G+ +P E+ ++    AC  L A + G ++H +  
Sbjct: 478 NVMIAGYSQNGLPDEAINLFRQMLSDGI-QPYEIAIMCVCGACSQLSALRLGKELHCFAL 536

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  L  ++ V +++IDMYAK G +  +  +FD ++  K + +WN ++  + +HG G  AL
Sbjct: 537 KAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWNVIIAGYGIHGRGKEAL 595

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDL 356
           ELFE+M R G+KPDD ++   L AC+HAGLV+DG+  FN M N   ++P ++HY  VVD+
Sbjct: 596 ELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDM 655

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           LGRAGR+ +A  +++ +    D  +W +LL +C+++G++ + E  + KL+E+      ++
Sbjct: 656 LGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENY 715

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VL+SNL+A   +WDDV RVR  MK+  ++K  G S+IEVGG +H F   D+   +  E+ 
Sbjct: 716 VLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVR 775

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
           E    +  KI   GY   T  VLHD+ EE+K   L  HSEKLA++FGL++T++   ++V+
Sbjct: 776 ETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVY 835

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLRIC DCH+  K ISKV NR+I+VRD  RFH F+DG CSC DYW
Sbjct: 836 KNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 164/326 (50%), Gaps = 16/326 (4%)

Query: 4   LNALLQKCSSNGAVSHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYAL--SPLNELAY 60
           +  LLQ C   G    I + ++L   ++ + QF +  F + ++II  Y++  SP +    
Sbjct: 1   MGVLLQAC---GQRKDIEVGRRLHEMVSASTQFCND-FVLNTRIITMYSMCGSPSD---- 52

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACA 119
           +  +F ++   +   +NA++     +    +A+  + +++    H+ D  T    +KACA
Sbjct: 53  SRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA 112

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            +L L     IH    +   ++D  +G  L+ +Y K G +  A KVF+ M  R++ SWN+
Sbjct: 113 GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNS 172

Query: 180 LIAGLAQGNLASEAVDLFKRMKM-EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           +I G ++     E+ + F+ M + E  F P+  T++  L  C      ++G  +H    +
Sbjct: 173 IICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVK 232

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L+  ++V N++IDMY+KC  L +A  +FD    +K++V+WN+M+  +A   D  R   
Sbjct: 233 LGLNEELMVNNSLIDMYSKCRFLSEAQLLFDK-NDKKNIVSWNSMIGGYAREEDVCRTFY 291

Query: 299 LFEQMGR--AGVKPDDVSYLAALCAC 322
           L ++M    A +K D+ + L  L  C
Sbjct: 292 LLQKMQTEDAKMKADEFTILNVLPVC 317



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 174/370 (47%), Gaps = 7/370 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSK--PTNAVLWYRQM 99
           V + +I+ Y  S    L+ A  LF + +  +   +N+++ G A       T  +L   Q 
Sbjct: 241 VNNSLIDMY--SKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQT 298

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
                ++D  T    L  C     L    ++H +  RHG  ++ L+    +  Y + G +
Sbjct: 299 EDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGAL 358

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
            S+++VFD M  + ++SWNAL+ G AQ +   +A+DL+ +M   G+  P+  T+   L A
Sbjct: 359 CSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGL-DPDWFTIGSLLLA 417

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
           C  + +   G++IH +     L ++  +  +++ +Y  CG    A  +FD ++ R SLV+
Sbjct: 418 CSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHR-SLVS 476

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           WN M+  ++ +G    A+ LF QM   G++P +++ +    AC+    +  G  L     
Sbjct: 477 WNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFAL 536

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
              +  ++    S++D+  + G +  +  I   +    D+  W  ++    ++G  + A 
Sbjct: 537 KAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLRE-KDVASWNVIIAGYGIHGRGKEAL 595

Query: 400 IASRKLVEMG 409
               K++ +G
Sbjct: 596 ELFEKMLRLG 605



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 139/293 (47%), Gaps = 5/293 (1%)

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
           F  D +L T ++ +Y+  G    ++ VFD++  +++  WNA+++   +  L  +A+ +F 
Sbjct: 30  FCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFS 89

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            +      KP+  T+   + AC  L     G  IH    +  L  +V V NA+I MY KC
Sbjct: 90  ELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKC 149

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYL 316
           GL+++A +VF+++   ++LV+WN+++  F+ +G    +   F +M  G     PD  + +
Sbjct: 150 GLVEEAVKVFEHMP-ERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLV 208

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
             L  C     ++ G+ +       G+   +    S++D+  +   L EA  ++   +  
Sbjct: 209 TVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEA-QLLFDKNDK 267

Query: 377 TDMVLWQTLLGACQLYGDVEMAEIASRKL-VEMGSNNCGDFVLLSNLYAAYER 428
            ++V W +++G      DV       +K+  E       +F +L+ L    ER
Sbjct: 268 KNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLER 320


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/605 (38%), Positives = 353/605 (58%), Gaps = 48/605 (7%)

Query: 18  SHIHIKQLQAHLTTTG--QFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINA-PSTN 74
           S   IKQ+ A + T G  Q  S L P+    I          L++A  +F Q  + P T 
Sbjct: 67  SLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIG------CRNLSFARIVFDQFPSLPPTI 120

Query: 75  DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS--DALTCSFALKACARVLALFETLQ-IH 131
            +N +++  + +     ++  + QML     +  D  T +F   AC+R   L    + +H
Sbjct: 121 IWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVH 180

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA-QGNLA 190
             V++ G+ +D  +G +L+++Y+    +V AK+VFDEM  RD+ +W +++ G A +G L 
Sbjct: 181 GMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELV 240

Query: 191 ------------------------------SEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
                                         +EA+  F  M      KPNE  ++  L+AC
Sbjct: 241 RARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSAC 300

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
            HLGA  +G  IH YI + R+ ++  +  A+IDMYAKCG +D A  VFD +  ++ L+TW
Sbjct: 301 AHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLH-KRDLLTW 359

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
            +M+   ++HG G   L  F +M   G KPDD++ L  L  C+H+GLV++G+ +F+ M  
Sbjct: 360 TSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIP 419

Query: 341 C-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             G+ P ++HYG ++DLLGRAGRL+ A + +KS+ M  D+V W+ LL AC+++GDV++ E
Sbjct: 420 LWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGE 479

Query: 400 IASRKLVEM-GSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGV 458
                + E+   ++ G +VLLSNLYA+  +W+ V +VRKAM  R  +  PG S+IE+ GV
Sbjct: 480 RIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGV 539

Query: 459 IHKFFTSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
           +H+F  +DK H +  EI +KL+E++ +I  E GY   T  VL D+ EE+KE A+ +HSEK
Sbjct: 540 VHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEK 599

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LAVAFGL+ST E T I++ KNLR C DCH  +K IS V+NREI+VRDR RFH F+ G CS
Sbjct: 600 LAVAFGLLSTQEGT-IRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFHTFRYGNCS 658

Query: 578 CKDYW 582
           C DYW
Sbjct: 659 CTDYW 663


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/525 (40%), Positives = 332/525 (63%), Gaps = 5/525 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF +I       +NA++ G A +     A+  ++ M++ + R D  T    + ACA+
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             ++    Q+H  +  HGF ++  +   L+D+Y+K GE+ +A  +F+ +  +D+ SWN L
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI--RE 238
           I G    NL  EA+ LF+ M   G   PN+VT+L  L AC HLGA   G  IH YI  R 
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 397

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           + +     +  ++IDMYAKCG ++ A +VF++I   KSL +WN M+  FA+HG    + +
Sbjct: 398 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFD 456

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           LF +M + G++PDD++++  L AC+H+G++D G  +F +M  +  + P ++HYG ++DLL
Sbjct: 457 LFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLL 516

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           G +G  +EA +++  + M  D V+W +LL AC+++G+VE+ E  +  L+++   N G +V
Sbjct: 517 GHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYV 576

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YA+  RW++V + R  + ++ +KKVPG S IE+  V+H+F   DK H + REIY 
Sbjct: 577 LLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 636

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            L+E+   +++ G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   T + + K
Sbjct: 637 MLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 696

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+CR+CH+  KLISK+Y REII RDR RFH F+DG CSC DYW
Sbjct: 697 NLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 216/422 (51%), Gaps = 44/422 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE-LAYAHAL 64
           +LL  C +  ++  IH + ++  L  T    SKL       IEF  LSP  E L YA ++
Sbjct: 38  SLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKL-------IEFCILSPHFEGLPYAISV 90

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F+ I  P+   +N + RG A SS P +A+  Y  M+      ++ T  F LK+CA+  A 
Sbjct: 91  FKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAF 150

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDV-------------------------------Y 153
            E  QIH HVL+ G   D  + T+L+ +                               Y
Sbjct: 151 KEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGY 210

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           A  G I +A+K+FDE+ V+D+ SWNA+I+G A+     EA++LFK M M+   +P+E T+
Sbjct: 211 ASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM-MKTNVRPDESTM 269

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           +  ++AC   G+ + G ++H +I +     N+ + NA+ID+Y+KCG L+ A  +F+ +  
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLP- 328

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG-- 331
            K +++WNT++  +        AL LF++M R+G  P+DV+ L+ L AC H G +D G  
Sbjct: 329 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 388

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           + ++      GV        S++D+  + G ++ A  +  S+ +   +  W  ++    +
Sbjct: 389 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAM 447

Query: 392 YG 393
           +G
Sbjct: 448 HG 449



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 136/270 (50%), Gaps = 6/270 (2%)

Query: 26  QAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAH 85
           Q HL            + + +I+ Y  S   EL  A  LF ++       +N ++ G  H
Sbjct: 287 QVHLWIDDHGFGSNLKIVNALIDLY--SKCGELETACGLFERLPYKDVISWNTLIGGYTH 344

Query: 86  SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH--GFLADA 143
            +    A+L +++MLR     + +T    L ACA + A+     IH ++ +   G    +
Sbjct: 345 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNAS 404

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            L T+L+D+YAK G+I +A +VF+ +  + ++SWNA+I G A    A  + DLF RM+  
Sbjct: 405 SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKI 464

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLD 262
           G+ +P+++T +G L+AC H G    G  I   + ++ ++   +     +ID+    GL  
Sbjct: 465 GI-QPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFK 523

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           +A E+ + ++     V W +++ A  +HG+
Sbjct: 524 EAEEMINMMEMEPDGVIWCSLLKACKMHGN 553



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 2/139 (1%)

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L  A  VF  I+   +L+ WNTM    A+  D   AL+L+  M   G+ P+  ++   L 
Sbjct: 84  LPYAISVFKTIQ-EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLK 142

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           +C  +    +G ++   +   G   ++  + S++ +  + GRL++A  +    S   D+V
Sbjct: 143 SCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDK-SPHRDVV 201

Query: 381 LWQTLLGACQLYGDVEMAE 399
            +  L+      G +E A+
Sbjct: 202 SYTALIKGYASRGYIENAQ 220


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/508 (40%), Positives = 315/508 (62%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N V+ G A +    +A++  R+M     R D+ T S  L   A  + L +  +IH + +
Sbjct: 204 WNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAI 263

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R+G+ AD  +G++L+D+YAK   +  + +VF  +   D  SWN++IAG  Q  +  E + 
Sbjct: 264 RNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLK 323

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
            F++M +  + KPN V+    + AC HL     G ++H YI   R D NV + +A++DMY
Sbjct: 324 FFQQMLIAKI-KPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMY 382

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG +  A  +FD ++    +V+W  M+M +A+HG    A+ LF++M   GVKP+ V++
Sbjct: 383 AKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAF 441

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +A L AC+HAGLVD+  + FNSM  +  + P ++HY +V DLLGR GRL+EA + +  + 
Sbjct: 442 MAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMH 501

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +     +W TLL AC+++ ++E+AE  S+KL  +   N G +VLLSN+Y+A  RW D  +
Sbjct: 502 IEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARK 561

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R AM+++ +KK P  S+IE+   +H F   DKSH  +  I E L  ++ +++  GY   
Sbjct: 562 LRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLD 621

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T+ VLHD+ EE+K   LC HSE+LA+ FG+IST   T+I+V KNLR+C DCH   K ISK
Sbjct: 622 TTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISK 681

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +  REI+VRD  RFH FKDG CSC D+W
Sbjct: 682 IVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 183/418 (43%), Gaps = 40/418 (9%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            LLQ  SS  + S    KQL A +  T      L    S I+  Y  S LN L  +  +F
Sbjct: 10  TLLQNPSSVKSKSQA--KQLHAQILRTSLPSPSLL---STILSIY--SNLNLLHDSLLIF 62

Query: 66  RQINAPSTN-DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
             + +P T   + +++R         +++ ++ QML      D       LK+C  +  L
Sbjct: 63  NSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDL 122

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAK---VGEIVSAKKVFDE------------- 168
                +H  ++R G   D      L+++Y+K   + E+ + KKVFDE             
Sbjct: 123 RFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKE 182

Query: 169 -------------MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG 215
                        M  RDI SWN +I+G AQ  +  +A+ + + M      +P+  T+  
Sbjct: 183 SYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMG-NADLRPDSFTLSS 241

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            L          +G +IH Y      D +V + +++IDMYAKC  +D +  VF  +  + 
Sbjct: 242 VLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QH 300

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
             ++WN+++     +G     L+ F+QM  A +KP+ VS+ + + AC H   +  G +L 
Sbjct: 301 DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLH 360

Query: 336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
             +       N+    ++VD+  + G ++ A  I   + +  DMV W  ++    L+G
Sbjct: 361 GYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMEL-YDMVSWTAMIMGYALHG 417



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/308 (19%), Positives = 131/308 (42%), Gaps = 32/308 (10%)

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
           C   L+  + V +  +  Q+H+ +LR    + +LL +T+L +Y+ +  +  +  +F+ + 
Sbjct: 8   CKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLL-STILSIYSNLNLLHDSLLIFNSLP 66

Query: 171 VRDIA-SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
                 +W ++I       L   ++  F +M   G + P+       L +C  +   + G
Sbjct: 67  SPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKY-PDHNVFPSVLKSCTLMKDLRFG 125

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF---EVFDNIKC------------- 273
           + +H  I    +  ++  CNA+++MY+K   L++     +VFD  K              
Sbjct: 126 ESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYY 185

Query: 274 ------------RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
                       ++ +V+WNT++   A +G    AL +  +MG A ++PD  +  + L  
Sbjct: 186 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 245

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
                 +  G  +       G   ++    S++D+  +  R+ ++C +   +    D + 
Sbjct: 246 FAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH-DGIS 304

Query: 382 WQTLLGAC 389
           W +++  C
Sbjct: 305 WNSIIAGC 312


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/525 (41%), Positives = 332/525 (63%), Gaps = 5/525 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF +I       +NA++ G A +     A+  + +M++ + R D  T    L ACA 
Sbjct: 149 AQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAH 208

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             ++    Q+HS V  HGF ++  +   L+D+Y+K GE+ +A  +F  +  +D+ SWN L
Sbjct: 209 SGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTL 268

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI--RE 238
           I G    NL  EA+ LF+ M   G   PN+VT+L  L AC HLGA   G  IH YI  R 
Sbjct: 269 IGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRL 327

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           + +     +  ++IDMYAKCG ++ A +VF+++   KSL +WN M+  FA+HG    + +
Sbjct: 328 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMIFGFAMHGRADASFD 386

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           LF +M + G++PDD++++  L AC+H+G++D G  +F SM  +  + P ++HYG ++DLL
Sbjct: 387 LFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLL 446

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           G +G  +EA +++ ++ M  D V+W +LL AC+++G+VE+AE  ++ L+++   N   ++
Sbjct: 447 GHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYI 506

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YA+  RW+DV R+R  +  + +KKVPG S IEV  V+ +F   DK H + REIY 
Sbjct: 507 LLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYG 566

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            L+E+   ++E G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   T + + K
Sbjct: 567 MLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 626

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+CR+CH+  KL+SK+Y REI+ RDR RFH F+DG CSC DYW
Sbjct: 627 NLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 198/382 (51%), Gaps = 37/382 (9%)

Query: 46  IIEFYALSP-LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH 104
           +IE    SP  + L YA ++F  I  P+   +N ++RG A SS P +++  Y  M+    
Sbjct: 1   LIELCVPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGL 60

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV------------ 152
             ++ T  F LK+CA+     E  QIH  VL+ GF  D  + T+L+ +            
Sbjct: 61  LPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYK 120

Query: 153 -------------------YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
                              YA  G+I SA+K+FDE+ V+D+ SWNA+I+G A+     EA
Sbjct: 121 VFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEA 180

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253
           ++LF+ M M+   +P+E T +  L+AC H G+ + G ++H ++ +   D N+ + NA+ID
Sbjct: 181 LELFEEM-MKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALID 239

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313
           +Y+KCG ++ A  +F  +   K +++WNT++  +        AL LF++M R+G  P+DV
Sbjct: 240 LYSKCGEVETACGLFQGLS-YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 298

Query: 314 SYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
           + L+ L AC H G +D G  + ++      GV        S++D+  + G ++ A  +  
Sbjct: 299 TMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 358

Query: 372 SVSMGTDMVLWQTLLGACQLYG 393
           S+ +   +  W  ++    ++G
Sbjct: 359 SM-LHKSLSSWNAMIFGFAMHG 379



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 162/314 (51%), Gaps = 16/314 (5%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            +L  C+ +G++     +Q+ + +   G F S L  + + +I+ Y  S   E+  A  LF
Sbjct: 201 TVLSACAHSGSIELG--RQVHSWVDDHG-FDSNL-KIVNALIDLY--SKCGEVETACGLF 254

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           + ++      +N ++ G  H +    A+L +++MLR     + +T    L ACA + A+ 
Sbjct: 255 QGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAID 314

Query: 126 ETLQIHSHVLRH--GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
               IH ++ +   G    + L T+L+D+YAK G+I +A +VF+ M  + ++SWNA+I G
Sbjct: 315 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFG 374

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE-RLD 242
            A    A  + DLF RM+  G+ +P+++T +G L+AC H G    G  I   + ++ ++ 
Sbjct: 375 FAMHGRADASFDLFSRMRKIGI-EPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMT 433

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
             +     +ID+    GL  +A E+ + ++     V W +++ A  +HG+    +EL E 
Sbjct: 434 PKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGN----VELAES 489

Query: 303 MGRAGVK--PDDVS 314
             +  +K  P++ S
Sbjct: 490 FAQNLIKIEPENPS 503



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 2/139 (1%)

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L  A  VF+ I+    L+ WNTM+   A+  D   +L L+  M   G+ P+  ++   L 
Sbjct: 14  LPYATSVFETIQEPNQLI-WNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLK 72

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           +C  +    +G ++   +   G   ++  + S++ +  +  RL++A  +    S   D+V
Sbjct: 73  SCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSH-RDVV 131

Query: 381 LWQTLLGACQLYGDVEMAE 399
            +  L+      GD+  A+
Sbjct: 132 SYTALITGYASRGDIRSAQ 150


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/577 (38%), Positives = 343/577 (59%), Gaps = 9/577 (1%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +L  CS  G    + +K++  +    G  + +L  V +  +  YA    + L  A  +F 
Sbjct: 407 VLPACS--GEHQLLSLKEIHGYAFRHGFLKDEL--VANAFVAAYA--KCSSLDCAERVFC 460

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            +   + + +NA++   A +  P  ++  +  M+      D  T    L ACAR+  L  
Sbjct: 461 GMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRC 520

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             +IH  +LR+G   D  +G +L+ +Y +   ++  K +FD+M  + +  WN +I G +Q
Sbjct: 521 GKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQ 580

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
             L  EA+D F++M + G  KP E+ V G L AC  + A + G ++H +  +  L  +  
Sbjct: 581 NELPCEALDTFRQM-LSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAF 639

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V  A+IDMYAKCG ++++  +FD +   K    WN ++  + +HG G +A+ELFE M   
Sbjct: 640 VTCALIDMYAKCGCMEQSQNIFDRVN-EKDEAVWNVIIAGYGIHGHGLKAIELFELMQNK 698

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQE 365
           G +PD  ++L  L ACNHAGLV +G++    M N  GVKP ++HY  VVD+LGRAG+L E
Sbjct: 699 GGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTE 758

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A  +V  +    D  +W +LL +C+ YGD+E+ E  S+KL+E+  N   ++VLLSNLYA 
Sbjct: 759 ALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAG 818

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
             +WD+V +VR+ MK   + K  G S+IE+GG++++F  SD S  + ++I +   ++  K
Sbjct: 819 LGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKK 878

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           I + GY   TSCVLH++ EE K   L  HSEKLA++FGL++T++ T+++V KNLRIC DC
Sbjct: 879 ISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDC 938

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H+ IKL+SKV  R+IIVRD  RFH FK+G C+C D+W
Sbjct: 939 HNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 174/372 (46%), Gaps = 18/372 (4%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +++ Y  S    L  A ALF      +   +N ++ G +            ++M R
Sbjct: 336 VNNSLVDMY--SKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQR 393

Query: 102 GSH-RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
               R + +T    L AC+    L    +IH +  RHGFL D L+    +  YAK   + 
Sbjct: 394 EEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLD 453

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
            A++VF  M  + ++SWNALI   AQ     +++DLF  M M+    P+  T+   L AC
Sbjct: 454 CAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVM-MDSGMDPDRFTIGSLLLAC 512

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
             L   + G +IH ++    L+++  +  +++ +Y +C  +     +FD ++  KSLV W
Sbjct: 513 ARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKME-NKSLVCW 571

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           N M+  F+ +     AL+ F QM   G+KP +++    L AC+        +RL   + +
Sbjct: 572 NVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQV----SALRLGKEVHS 627

Query: 341 CGVKPNMKHYG----SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD-- 394
             +K ++        +++D+  + G ++++ +I   V+   D  +W  ++    ++G   
Sbjct: 628 FALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNE-KDEAVWNVIIAGYGIHGHGL 686

Query: 395 --VEMAEIASRK 404
             +E+ E+   K
Sbjct: 687 KAIELFELMQNK 698



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 170/323 (52%), Gaps = 14/323 (4%)

Query: 7   LLQKCSSNGAVSHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           LL+ C   G   +IH+ +++ A ++ + + ++ +  + ++II  Y  S     + +  +F
Sbjct: 98  LLRAC---GHHKNIHVGRKVHALVSASHKLRNDVV-LSTRIIAMY--SACGSPSDSRGVF 151

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFALKACARVLAL 124
                     +NA+L G + ++   +A+  + ++L  +  + D  T     KACA V  +
Sbjct: 152 DAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADV 211

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
                +H+  L+ G  +DA +G  L+ +Y K G + SA KVF+ M  R++ SWN+++   
Sbjct: 212 ELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYAC 271

Query: 185 AQGNLASEAVDLFKRM---KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           ++     E   +FKR+   + EG+  P+  T++  + AC  +G  + G  +H    +  +
Sbjct: 272 SENGGFGECCGVFKRLLISEEEGLV-PDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGI 330

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
              V V N+++DMY+KCG L +A  +FD +   K++V+WNT++  ++  GD     EL +
Sbjct: 331 TEEVTVNNSLVDMYSKCGYLGEARALFD-MNGGKNVVSWNTIIWGYSKEGDFRGVFELLQ 389

Query: 302 QMGR-AGVKPDDVSYLAALCACN 323
           +M R   V+ ++V+ L  L AC+
Sbjct: 390 EMQREEKVRVNEVTVLNVLPACS 412



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 108/216 (50%), Gaps = 1/216 (0%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF 166
           D  T    + ACA V  +   + +H    + G   +  +  +L+D+Y+K G +  A+ +F
Sbjct: 298 DVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALF 357

Query: 167 DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW 226
           D  G +++ SWN +I G ++        +L + M+ E   + NEVTVL  L AC      
Sbjct: 358 DMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQL 417

Query: 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
               +IH Y        + +V NA +  YAKC  LD A  VF  ++  K++ +WN ++ A
Sbjct: 418 LSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGME-GKTVSSWNALIGA 476

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A +G   ++L+LF  M  +G+ PD  +  + L AC
Sbjct: 477 HAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLAC 512



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 137/284 (48%), Gaps = 6/284 (2%)

Query: 115 LKACARVLALFETLQIHSHV-LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           L+AC     +    ++H+ V   H    D +L T ++ +Y+  G    ++ VFD    +D
Sbjct: 99  LRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKD 158

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           +  +NAL++G ++  L  +A+ LF  +       P+  T+     AC  +   + G+ +H
Sbjct: 159 LFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVH 218

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
               +     +  V NA+I MY KCG ++ A +VF+ ++ R +LV+WN+++ A + +G  
Sbjct: 219 ALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNR-NLVSWNSVMYACSENGGF 277

Query: 294 PRALELFEQM---GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
                +F+++      G+ PD  + +  + AC   G V  G+ +       G+   +   
Sbjct: 278 GECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVN 337

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
            S+VD+  + G L EA  +   ++ G ++V W T++      GD
Sbjct: 338 NSLVDMYSKCGYLGEARALF-DMNGGKNVVSWNTIIWGYSKEGD 380


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/521 (41%), Positives = 330/521 (63%), Gaps = 5/521 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F +I       +NA++ G A +     A+  +++M++ + + D  T    L ACA+
Sbjct: 188 AQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQ 247

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             ++    Q+HS +  HGF ++  +   L+D+Y K GE+ +A  +F+ +  +D+ SWN L
Sbjct: 248 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTL 307

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI--RE 238
           I G    NL  EA+ LF+ M   G   PNEVT+L  L AC HLGA   G  IH YI  R 
Sbjct: 308 IGGYTHMNLYKEALLLFQEMLRSGE-SPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRL 366

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           + +     +  ++IDMYAKCG ++ A +VFD++   +SL +WN M+  FA+HG    A +
Sbjct: 367 KGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMHGRANPAFD 425

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           +F +M + G++PDD++++  L AC+H+G++D G  +F SM  +  + P ++HYG ++DLL
Sbjct: 426 IFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLL 485

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           G +G  +EA +++ S+ M  D V+W +LL AC+++G+VE+ E  ++ L+++   N G +V
Sbjct: 486 GHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYV 545

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YA   RW++V + R  + ++ +KKVPG S IE+  V+H+F   DK H + REIY 
Sbjct: 546 LLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYG 605

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            L+E+   ++E G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   T + + K
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 665

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSC 578
           NLR+CR+CH+  KLISK+Y REII RDR RFH F DG CSC
Sbjct: 666 NLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 134/433 (30%), Positives = 218/433 (50%), Gaps = 45/433 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSP-LNELAYAHAL 64
           +LL  C +  ++  IH K ++  L  T    SKL       IEF  LSP  + L YA ++
Sbjct: 7   SLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKL-------IEFSVLSPHFDGLTYAISV 59

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F  I  P+   +N + RG A SS P +A+  Y  M+      ++ T  F LKACA+  A 
Sbjct: 60  FDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAF 119

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE-------------------------- 158
            E  QIH HVL+ G   D  + T+L+ +Y K G                           
Sbjct: 120 REGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGY 179

Query: 159 -----IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
                I SA+K+FDE+ V+D+ SWNALI+G A+     EA++LFK M M+   KP+E T+
Sbjct: 180 ASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEM-MKTNVKPDESTM 238

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           +  L+AC    + + G ++H +I +     N+ + NA+ID+Y KCG ++ A  +F+ +  
Sbjct: 239 VTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLS- 297

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG-- 331
            K +++WNT++  +        AL LF++M R+G  P++V+ L+ L AC H G +D G  
Sbjct: 298 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRW 357

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           + ++      GV        S++D+  + G ++ A  +  S+ +   +  W  ++    +
Sbjct: 358 IHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAM 416

Query: 392 YGDVEMA-EIASR 403
           +G    A +I SR
Sbjct: 417 HGRANPAFDIFSR 429



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 137/256 (53%), Gaps = 8/256 (3%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E+  A  LF  ++      +N ++ G  H +    A+L +++MLR     + +T    L 
Sbjct: 285 EVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILP 344

Query: 117 ACARVLALFETLQIHSHVLRH--GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           ACA + A+     IH ++ +   G    + L T+L+D+YAK G+I +A++VFD M  R +
Sbjct: 345 ACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSL 404

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
           +SWNA+I G A    A+ A D+F RM+ +G+ +P+++T +G L+AC H G    G  I  
Sbjct: 405 SSWNAMIFGFAMHGRANPAFDIFSRMRKDGI-EPDDITFVGLLSACSHSGMLDLGRHIFR 463

Query: 235 YIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            + E+ ++   +     +ID+    GL  +A E+ ++++     V W +++ A  +HG+ 
Sbjct: 464 SMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGN- 522

Query: 294 PRALELFEQMGRAGVK 309
              +EL E   +  +K
Sbjct: 523 ---VELGESFAQNLIK 535



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L  A  VFD+I+   +L+ WNTM    A+  D   AL L+  M   G+ P+  ++   L 
Sbjct: 53  LTYAISVFDSIQ-EPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLK 111

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           AC  +    +G ++   +   G   ++  + S++ +  + GR ++A  +    S   D+V
Sbjct: 112 ACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSH-RDVV 170

Query: 381 LWQTLL----------GACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
            +  L+           A +++ ++ + ++ S   +  G    G++
Sbjct: 171 SYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNY 216


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/576 (39%), Positives = 341/576 (59%), Gaps = 24/576 (4%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L+ +CS         +KQ+ A +  TG F        S++I   ALSP   L YA  +F
Sbjct: 40  SLIDQCSETK-----QLKQIHAQMLRTGLFFDPF--SASRLITAAALSPFPSLDYAQQVF 92

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLAL 124
            QI  P+   +N ++R  A SS P  ++L + +ML  S    D  T  F +KA + +  L
Sbjct: 93  DQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEEL 152

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
           F     H  V++    +D  +  +L+  YAK GE+    +VF     RD+ SWN++I   
Sbjct: 153 FTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAF 212

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
            QG    EA++LF+ M+ + V KPN +T++G L+AC     ++ G  +H YI   R+  +
Sbjct: 213 VQGGCPEEALELFQEMETQNV-KPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXES 271

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA------------VHGD 292
           + + NA++DMY KCG ++ A  +FD +   K +V+W TM++ +A            +HG 
Sbjct: 272 LTLSNAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTMLVGYAKIGEYDAAQGLAMHGH 330

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYG 351
           G  A+ LF +M    VKP+ V++   LCAC+H GLV++G   FN M    GV P +KHY 
Sbjct: 331 GKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYA 390

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +VD+LGRAG L+EA ++++ + M     +W  LLGAC ++ +V +AE A  +L+E+   
Sbjct: 391 CMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPG 450

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           N G +VLLSN+YA   +WD V  +RK M++  +KK PG S IEV G++H+F   D SH  
Sbjct: 451 NHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPS 510

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEE-KENALCYHSEKLAVAFGLISTSEA 530
            ++IY KLDEI+ +++  GY    S +L  + EE+ KE AL  HSEKLA+AFGLIST ++
Sbjct: 511 AKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQS 570

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRV 566
             I++ KNLR+C DCH V KL+SK+Y+REI++RDRV
Sbjct: 571 QPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRV 606


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 339/574 (59%), Gaps = 36/574 (6%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           + + +I FYA     EL   + +F  I       +N+++        P  A+  +++M  
Sbjct: 173 ILNSLIHFYA--KCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMET 230

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF-----LADALLG---------- 146
            + + + +T    L ACA+         +HS++ R+       L++A+L           
Sbjct: 231 QNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVED 290

Query: 147 ----------------TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
                           TT+L  YAK+GE  +A+ +FD M  +DIA+WNALI+   Q    
Sbjct: 291 AKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKP 350

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
            EA++LF  +++    KP+EVT++  L+AC  LGA   G  IH YI+++ + +N  +  +
Sbjct: 351 KEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTS 410

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           +IDMY KCG L KA  VF +++ RK +  W+ M+   A+HG G  A+ LF +M    VKP
Sbjct: 411 LIDMYCKCGDLQKALMVFHSVE-RKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKP 469

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           + V++   LCAC+H GLV++G   FN M    GV P +KHY  +VD+LGRAG L+EA ++
Sbjct: 470 NAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVEL 529

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW 429
           ++ + M     +W  LLGAC ++ +V +AE A  +L+E+   N G +VLLSN+YA   +W
Sbjct: 530 IEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKW 589

Query: 430 DDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEY 489
           D V  +RK M++  +KK PG S IEV G++H+F   D SH   ++IY KLDEI+ +++  
Sbjct: 590 DRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETI 649

Query: 490 GYAAGTSCVLHDIGEEE-KENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDV 548
           GY    S +L  + EE+ KE AL  HSEKLA+AFGLIST ++  I++ KNLR+C DCH V
Sbjct: 650 GYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSV 709

Query: 549 IKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KL+SK+Y+REI++RDR RFH F++G CSC DYW
Sbjct: 710 AKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 209/421 (49%), Gaps = 43/421 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L+ +CS         +KQ+ A +  TG F        S++I   ALSP   L YA  +F
Sbjct: 40  SLIDQCSETK-----QLKQIHAQMLRTGLFFDPF--SASRLITAAALSPFPSLDYAQQVF 92

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLAL 124
            QI  P+   +N ++R  A SS P  ++L + +ML  S    D  T  F +KA + +  L
Sbjct: 93  DQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEEL 152

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
           F     H  V++    +D  +  +L+  YAK GE+    +VF  +  RD+ SWN++I   
Sbjct: 153 FTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAF 212

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
            QG    EA++LF+ M+ + V KPN +T++G L+AC     ++ G  +H YI   R+  +
Sbjct: 213 VQGGCPEEALELFQEMETQNV-KPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGES 271

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD------------ 292
           + + NA++DMY KCG ++ A  +FD +   K +V+W TM++ +A  G+            
Sbjct: 272 LTLSNAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTMLVGYAKIGEYDAAQGIFDAMP 330

Query: 293 ------------------GPR-ALELFEQMGRAGV-KPDDVSYLAALCACNHAGLVDDGV 332
                              P+ ALELF ++  +   KPD+V+ ++ L AC   G +D G 
Sbjct: 331 NQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGG 390

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            +   +   G+K N     S++D+  + G LQ+A  +  SV    D+ +W  ++    ++
Sbjct: 391 WIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVER-KDVFVWSAMIAGLAMH 449

Query: 393 G 393
           G
Sbjct: 450 G 450


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/618 (37%), Positives = 358/618 (57%), Gaps = 45/618 (7%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
           M   + LL  C S        IKQ+ A L TTG     L P+ +  +     S    ++Y
Sbjct: 1   MVRCDFLLSSCKS-----FRQIKQVHARLITTGLI---LHPIPTNKLLKQLSSIFAPISY 52

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPT-NAVLWYRQMLRGSHR-SDALTCSFALKAC 118
           AH +F     P    +N +++ LA S+  + ++   +R ++R      +  + +FA K C
Sbjct: 53  AHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGC 112

Query: 119 ARVLALFETLQIHSHVLRHG-----FLADALLG--------------------------T 147
              + + E  Q+  H ++ G     F+ +AL+G                           
Sbjct: 113 GSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWN 172

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
            +L  YA++G++  A+++FDEM  +D+ SW  +I+G  Q     EA+D+F  M  +G+  
Sbjct: 173 IMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGM-S 231

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           PNE T+  +LAAC +L A  +G  +H YI++  + MN  +   +IDMYAKCG L+ A ++
Sbjct: 232 PNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKL 291

Query: 268 FD-NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           F+ N + ++ +  WN M+  FAVHG    A+E+FEQM    V P+ V+++A L AC+H  
Sbjct: 292 FNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGN 351

Query: 327 LVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
            V++G   F SMA+   VKP ++HYG +VDLLGRAGRL+EA +I+ S+ +  D+ +W  L
Sbjct: 352 RVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGAL 411

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           L AC+++ D EM E   + + E+  N+ G  VLL+N+Y+    W++   +R+ +     K
Sbjct: 412 LSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKK 471

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE- 504
           K PG S IE+ G+ H+F   D+SH + +++Y  LDE++ K+K  GY   +  VL DI + 
Sbjct: 472 KTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDN 531

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
           E++E AL  HSEKLA+AFGL++T+  T I++ KNLR+C DCH  IK ISKVY+REIIVRD
Sbjct: 532 EDRETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRD 591

Query: 565 RVRFHRFKDGACSCKDYW 582
           R+R+H FKDG CSC DYW
Sbjct: 592 RIRYHHFKDGTCSCNDYW 609


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/560 (39%), Positives = 337/560 (60%), Gaps = 6/560 (1%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
            + Q+QA L T+    S + P    +    A +    +  A  +F  + +P+    NA L
Sbjct: 3   QVLQIQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNATL 62

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           + LA +S   +A+ ++   +   +    D  T +  LKACA +  +    +IH+ V + G
Sbjct: 63  KALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQG 122

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD--IASWNALIAGLAQGNLASEAVDL 196
           F ++  +  +L+D+Y K G ++ A+ +FDEM VRD  +  WNA+IAG AQ    S+A+++
Sbjct: 123 FESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEV 182

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           F+ M+  G   PN+VT++  L AC HLGA   G  I  +I    + + + + NA+ DMYA
Sbjct: 183 FRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYA 242

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG + +A  VF+ ++  + +++W+ ++   A++G    A   F +M   G KP+DV ++
Sbjct: 243 KCGCITEARRVFNKME-ERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFM 301

Query: 317 AALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
             L AC HAGLV  G+  FN+M    GV P ++HYG VVDLL RAG L +A D++ S+ M
Sbjct: 302 GLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPM 361

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
             ++++W  LLG C++Y D    +   + ++E+ S++ G +V L+N+Y++  R DD  + 
Sbjct: 362 KPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKC 421

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           R  M+   V K PG S+IEV   +H+FF  D SH +  +IY  + E+M+K+K  GY   T
Sbjct: 422 RLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKT 481

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
             V+H I EEEKE+AL  HSEKLA+AFGLISTSE T+I+V KNLRIC DCHD  K+IS +
Sbjct: 482 DLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKIISGI 541

Query: 556 YNREIIVRDRVRFHRFKDGA 575
             REIIVRDR RFH FKDGA
Sbjct: 542 VKREIIVRDRSRFHHFKDGA 561


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/579 (38%), Positives = 345/579 (59%), Gaps = 10/579 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ++L  CS++ A+     K + +H++  G   S    + + +I  YA     +L  A  LF
Sbjct: 335 SILNACSTSKALEAG--KLIHSHISEDGH--SSDVQIGNALISMYARC--GDLPKARELF 388

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             +       +NA++ G A       A+  Y+QM     +   +T    L ACA   A  
Sbjct: 389 YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYA 448

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           +   IH  +LR G  ++  L   L+++Y + G ++ A+ VF+    RD+ SWN++IAG A
Sbjct: 449 DGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA 508

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q      A  LF+ M+ E + +P+ +T    L+ C +  A + G +IH  I E  L ++V
Sbjct: 509 QHGSYETAYKLFQEMQNEEL-EPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDV 567

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            + NA+I+MY +CG L  A  VF +++ R  +++W  M+   A  G+  +A+ELF QM  
Sbjct: 568 NLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQGEDMKAIELFWQMQN 626

Query: 306 AGVKPDDVS-YLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRL 363
            G +P D S + + L ACNHAGLV +G ++F+SM +  GV P ++HYG +V LLGRA R 
Sbjct: 627 EGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRF 686

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
           QEA  ++  +    D  +W+TLLGAC+++G++ +AE A+   +++ + N   ++LLSN+Y
Sbjct: 687 QEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVY 746

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           AA  RWDDV ++R+ M+ R ++K PG S+IEV  +IH+F  +D+SH +  EIY +L  + 
Sbjct: 747 AAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLS 806

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            +++E GY   T  VLHD+G+  +E +LC HSE+LA+A+GLI T   T I++FKNLRIC 
Sbjct: 807 VEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICG 866

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH   K ISK+  REII RD  RFH FK+G CSC+DYW
Sbjct: 867 DCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 174/319 (54%), Gaps = 3/319 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++  LA       A   Y +M       +  T    L AC+   AL     IHSH+ 
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHIS 357

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             G  +D  +G  L+ +YA+ G++  A+++F  M  RD+ SWNA+IAG A+     EA+ 
Sbjct: 358 EDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMR 417

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           L+K+M+ EGV KP  VT L  L+AC +  A+ +G  IHE I    +  N  + NA+++MY
Sbjct: 418 LYKQMQSEGV-KPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMY 476

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            +CG L +A  VF+  + R  +++WN+M+   A HG    A +LF++M    ++PD++++
Sbjct: 477 RRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
            + L  C +   ++ G ++   +   G++ ++    +++++  R G LQ+A ++  S+  
Sbjct: 536 ASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQH 595

Query: 376 GTDMVLWQTLLGACQLYGD 394
             D++ W  ++G C   G+
Sbjct: 596 -RDVMSWTAMIGGCADQGE 613



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 150/295 (50%), Gaps = 4/295 (1%)

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
           +D  T    L+ C R   L E  +IH+ ++  G   D  L   L+++Y K   ++ A +V
Sbjct: 25  TDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           F EM  RD+ SWN+LI+  AQ     +A  LF+ M+  G F PN++T +  L AC     
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAG-FIPNKITYISILTACYSPAE 143

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            + G KIH  I +     +  V N+++ MY KCG L +A +VF  I  R  +V++NTM+ 
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR-DVVSYNTMLG 202

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
            +A        L LF QM   G+ PD V+Y+  L A     ++D+G R+       G+  
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNS 262

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG-DVEMAE 399
           +++   ++V +  R G +  A    K ++   D+V++  L+ A   +G +VE  E
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGIA-DRDVVVYNALIAALAQHGHNVEAFE 316



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 161/328 (49%), Gaps = 3/328 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH +F+++       +N+++   A       A   + +M       + +T    L AC  
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              L    +IHS +++ G+  D  +  +LL +Y K G++  A++VF  +  RD+ S+N +
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +   AQ     E + LF +M  EG+  P++VT +  L A        EG +IH+   EE 
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGI-SPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG 259

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L+ ++ V  A++ M  +CG +D A + F  I  R  +V +N ++ A A HG    A E +
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADR-DVVVYNALIAALAQHGHNVEAFEQY 318

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M   GV  +  +YL+ L AC+ +  ++ G  + + ++  G   +++   +++ +  R 
Sbjct: 319 YRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC 378

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           G L +A ++  ++    D++ W  ++  
Sbjct: 379 GDLPKARELFYTMPK-RDLISWNAIIAG 405


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/515 (42%), Positives = 321/515 (62%), Gaps = 7/515 (1%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           P     N VLR  A S+ P  A+  +R+ L      D  T    L+AC R+LAL E   +
Sbjct: 86  PDPFSLNTVLRIAASSAHPRIALALHRRRLAPP---DTHTYPPLLQACTRLLALREGESL 142

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGLAQGN 188
           H+   ++G +A   +  +L+  Y   G   SA +VFDE+ V  R++ SWN+++ G A   
Sbjct: 143 HAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANG 202

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
             +E + +F R  +E    P+  T++  L AC  +GA   G ++H +  +  L  N  V 
Sbjct: 203 RPNEVLTIF-RETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVG 261

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           NA+ID+YAKCG ++ A++VF+ +   +++V+W ++++  A +G G  ALELF  M R  +
Sbjct: 262 NALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERL 321

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEAC 367
            P D++ +  L AC+H GLVDDG R FN M +  G+ P ++H G +VDLLGRAGR++EA 
Sbjct: 322 IPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAH 381

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
           + + ++ +  + V+W+TLLGAC ++  +E+ E A  +LVE+   + GD+VLLSNLYAA  
Sbjct: 382 NYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVG 441

Query: 428 RWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487
           RW D   +RK M    V+K PG S +E+   +++F   D+SH +  +IY+ L EI  +++
Sbjct: 442 RWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLR 501

Query: 488 EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHD 547
             GY   TS VL DI EEEKE AL YHSE+LA+AF L+ +   + I++ KNLR+C DCH 
Sbjct: 502 CQGYVPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHL 561

Query: 548 VIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           VIKLISKVY+REIIVRDR RFH FK G CSCKDYW
Sbjct: 562 VIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/595 (39%), Positives = 355/595 (59%), Gaps = 27/595 (4%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            +LQ CS    +  +H   L+   TT  +  + LF +  KI++    S  +++ YA  +F
Sbjct: 30  TVLQTCSDMSQLKQLHAFTLR---TTYPEEPATLF-LYGKILQLS--SSFSDVNYAFRVF 83

Query: 66  RQINAPSTNDFNAVLRGLAHS-SKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLA 123
             I   S+  +N ++R  AH  S+   A + YR+ML RG    D  T  F LKACA +  
Sbjct: 84  DSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG 143

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
             E  Q+H  +++HGF  D  +   L+ +Y   G +  A+KVFDEM  R + SWN++I  
Sbjct: 144 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 203

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-REERLD 242
           L +      A+ LF+ M+    F+P+  T+   L+AC  LG+   G   H ++ R+  +D
Sbjct: 204 LVRFGEYDSALQLFREMQRS--FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVD 261

Query: 243 --MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
             M+V+V N++I+MY KCG L  A +VF  ++ ++ L +WN M++ FA HG    A+  F
Sbjct: 262 VAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAEEAMNFF 320

Query: 301 EQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           ++M   R  V+P+ V+++  L ACNH G V+ G + F+ M  +  ++P ++HYG +VDL+
Sbjct: 321 DRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLI 380

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG-DVEMAEIASRKLV------EMGS 410
            RAG + EA D+V S+ M  D V+W++LL AC   G  VE++E  +R ++      E  +
Sbjct: 381 ARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSN 440

Query: 411 NNC-GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
            NC G +VLLS +YA+  RW+DVG VRK M    ++K PG S IE+ G+ H+FF  D SH
Sbjct: 441 GNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSH 500

Query: 470 VKWREIYEKLDEIMFKIKEYGYAAGTS--CVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
            + ++IY++L  I  +++  GY    S   ++    +  KE +L  HSE+LA+AFGLI+ 
Sbjct: 501 PQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINL 560

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
              T I++FKNLR+C DCH+V KLISKV+N EIIVRDRVRFH FKDG+CSC DYW
Sbjct: 561 PPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/563 (38%), Positives = 340/563 (60%), Gaps = 8/563 (1%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           HI+Q+ AH+   G  Q     + +K++  YA     + AY+  LF  +    +  ++ ++
Sbjct: 18  HIRQVHAHVVANGTLQD--LVIANKLLYTYAQHKAIDDAYS--LFDGLTMRDSKTWSVMV 73

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
            G A +         +R++LR     D  T  F ++ C     L     IH  VL+HG L
Sbjct: 74  GGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLL 133

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
           +D  +  +L+D+YAK   +  A+++F+ M  +D+ +W  +I   A  N A E++ LF RM
Sbjct: 134 SDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLVLFDRM 192

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           + EGV  P++V ++  + AC  LGA       ++YI      ++V++  A+IDMYAKCG 
Sbjct: 193 REEGVV-PDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGS 251

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           ++ A EVFD +K  K++++W+ M+ A+  HG G  A++LF  M    + P+ V++++ L 
Sbjct: 252 VESAREVFDRMK-EKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLY 310

Query: 321 ACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC+HAGL+++G+R FNSM     V+P++KHY  +VDLLGRAGRL EA  +++++++  D 
Sbjct: 311 ACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDE 370

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
            LW  LLGAC+++  +E+AE A+  L+E+   N G +VLLSN+YA   +W+ V + R  M
Sbjct: 371 RLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMM 430

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
             R +KK+PG+++IEV    ++F   D+SH + +EIYE L  ++ K++  GY   T  VL
Sbjct: 431 TQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVL 490

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
            D+ EE K+  L  HSEKLA+AFGLI+  E   I++ KNLR+C DCH   K++S +  R 
Sbjct: 491 QDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRS 550

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           IIVRD  RFH F DG CSC DYW
Sbjct: 551 IIVRDANRFHHFNDGTCSCGDYW 573



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 135/274 (49%), Gaps = 4/274 (1%)

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           R   +F   Q+H+HV+ +G L D ++   LL  YA+   I  A  +FD + +RD  +W+ 
Sbjct: 12  RCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSV 71

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           ++ G A+    +     F+ +   GV  P+  T+   +  C      + G  IH+ + + 
Sbjct: 72  MVGGFAKAGDHAGCYATFRELLRCGV-TPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKH 130

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            L  +  VC +++DMYAKC +++ A  +F+ +   K LVTW  M+ A+A   +   +L L
Sbjct: 131 GLLSDHFVCASLVDMYAKCIVVEDAQRLFERM-LSKDLVTWTVMIGAYA-DCNAYESLVL 188

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           F++M   GV PD V+ +  + AC   G +       + +   G   ++    +++D+  +
Sbjct: 189 FDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAK 248

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            G ++ A ++   +    +++ W  ++ A   +G
Sbjct: 249 CGSVESAREVFDRMK-EKNVISWSAMIAAYGYHG 281


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/527 (42%), Positives = 318/527 (60%), Gaps = 7/527 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF +I A     +NA++ G   S +   A+  + +M       +  T    L AC  
Sbjct: 212 ARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGH 271

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + +L     I S V   GF  +  L   L+D+Y+K GEI +A+K+FD M  +D+  WN +
Sbjct: 272 LRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTM 331

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G    +L  EA+ LF+ M  E V  PN+VT L  L AC  LGA   G  +H YI +  
Sbjct: 332 IGGYCHLSLYEEALVLFEVMLRENV-TPNDVTFLAVLPACASLGALDLGKWVHAYIDKNL 390

Query: 241 LDM----NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
                  NV +  ++I MYAKCG ++ A +VF ++  R SL +WN M+   A++G   RA
Sbjct: 391 KGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSR-SLASWNAMISGLAMNGHAERA 449

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVD 355
           L LFE+M   G +PDD++++  L AC  AG V+ G R F+SM  + G+ P ++HYG ++D
Sbjct: 450 LGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMID 509

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LL R+G+  EA  ++ ++ M  D  +W +LL AC+++G VE  E  + +L E+   N G 
Sbjct: 510 LLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGA 569

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +VLLSN+YA   RWDDV ++R  + ++ +KKVPG + IE+ GV+H+F   DK H +   I
Sbjct: 570 YVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENI 629

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
           +  LDE+   ++E G+   TS VL+D+ EE KE AL  HSEKLA+AFGLIST   ++I++
Sbjct: 630 FRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRI 689

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+CR+CH   KLISK++NREII RDR RFH FKDG CSC D W
Sbjct: 690 VKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/430 (30%), Positives = 216/430 (50%), Gaps = 49/430 (11%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL KC    ++  IH   +++ L  T      LF  +SK+IEF ALSP  +L+YA +LF 
Sbjct: 31  LLAKCPDIPSLKQIHSLIIKSGLHNT------LF-AQSKLIEFCALSPSRDLSYALSLFH 83

Query: 67  QINAPSTNDF--NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
            I+    N F  N ++R  + +  PT+++  + QML      ++ T     K+CA+  A 
Sbjct: 84  SIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKAT 143

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE-------------------------- 158
            E  Q+H+H L+        + T+L+ +Y++VGE                          
Sbjct: 144 HEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGY 203

Query: 159 -----IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
                +  A+++FDE+  +D+ SWNA+IAG  Q     EA+  F RM+ E    PN+ T+
Sbjct: 204 VSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQ-EADVSPNQSTM 262

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           +  L+ACGHL + + G  I  ++R+     N+ + NA++DMY+KCG +  A ++FD ++ 
Sbjct: 263 VSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGME- 321

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG-- 331
            K ++ WNTM+  +        AL LFE M R  V P+DV++LA L AC   G +D G  
Sbjct: 322 DKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKW 381

Query: 332 --VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGA 388
               +  ++   G   N+  + S++ +  + G ++ A  + +  SMG+  +  W  ++  
Sbjct: 382 VHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFR--SMGSRSLASWNAMISG 439

Query: 389 CQLYGDVEMA 398
             + G  E A
Sbjct: 440 LAMNGHAERA 449


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/580 (40%), Positives = 348/580 (60%), Gaps = 22/580 (3%)

Query: 12  SSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLN--ELAYAHALFRQIN 69
            S  A   IH + L+A + T+        P+ +K + F+ L+ L    L YA A+  ++ 
Sbjct: 26  PSLAAAKQIHARALRAGVPTS-------HPLLAKHLLFH-LAALRAPPLRYAVAVLSRLL 77

Query: 70  APSTND---FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
                D    N VLR  A S +P  A+  +R+ L      D  T    ++ACAR+LAL E
Sbjct: 78  PHGPLDPFPLNTVLRIAAGSPRPRVALELHRRRLA---LPDTHTYPPLIQACARLLALRE 134

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR--DIASWNALIAGL 184
              +H+   ++GF+    +  +L+ +Y   G   SA KVFDEM VR  ++ SWN+++   
Sbjct: 135 GECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSF 194

Query: 185 AQGNLASEAVDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
           A     +E + +F   +M GV F P+  T++  L AC   GA   G ++H Y+ +  L  
Sbjct: 195 AANGRPNEVLTVF--WEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVE 252

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N  V NA+ID+YAKCG ++ A  +F+ +   +++V+W ++++  A +G G  ALELF  M
Sbjct: 253 NSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLM 312

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGR 362
            R  + P +++ +  L AC+H GLVDDG R F+ M  + G+ P ++H G +VDLLGRAGR
Sbjct: 313 EREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGR 372

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           ++EA D + ++ +  + V+W+TLLG+C ++  +E+ ++A  +LVE+   + GD+VLLSNL
Sbjct: 373 VEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNL 432

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YAA   W DV  +RK M    V+K PG S +E+   +++F   D+SH +  +IYE L EI
Sbjct: 433 YAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEI 492

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
             +++  GY   TS VL DI EEEKE AL YHSE+LA+AF L+ +     I++ KNLR+C
Sbjct: 493 AERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMC 552

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH    LISKVY+REIIVRDR RFH F+ GACSCKDYW
Sbjct: 553 GDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/525 (40%), Positives = 328/525 (62%), Gaps = 5/525 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF +I+      +NA++ G   +     A+  Y+ M++ + + D  T    + ACA+
Sbjct: 150 ARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQ 209

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             ++    Q+HS +  HGF ++  +   L+D+Y+K GE+ +A  +F  +  +D+ SWN L
Sbjct: 210 SGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTL 269

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI--RE 238
           I G    NL  EA+ LF+ M   G   PN+VT+L  L AC HLGA   G  IH YI  R 
Sbjct: 270 IGGHTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRL 328

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           + +     +  ++IDMYAKCG ++ A +VFD++  R SL +WN M+  FA+HG    A +
Sbjct: 329 KGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTR-SLSSWNAMIFGFAMHGKANAAFD 387

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           LF +M + G+ PDD++++  L AC+H+G++D G  +F SM+ +  + P ++HYG ++DLL
Sbjct: 388 LFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLL 447

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           G  G  +EA ++++++ M  D V+W +LL AC+++ +VE+ E  ++ L+++   N G +V
Sbjct: 448 GHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYV 507

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YA   RWD V ++R  + ++ +KK PG S IE+  V+H+F   DK H + REIY 
Sbjct: 508 LLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYR 567

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            L+E+   ++E G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   T + + K
Sbjct: 568 MLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 627

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+CR+CH+  KLISK+Y REII RDR R H  KDG  SC DYW
Sbjct: 628 NLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 201/388 (51%), Gaps = 37/388 (9%)

Query: 45  KIIEFYALSP-LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           ++IEF  LSP  + L+YA ++F  I  P+   +N + RG A +S    A+  Y  M+   
Sbjct: 1   QLIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLG 60

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE----- 158
              ++ +  F LK+CA+  AL E  QIH HVL+ G+  D  + T+L+ +YA+ G      
Sbjct: 61  LLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAH 120

Query: 159 --------------------------IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
                                     I +A+K+FDE+ V+D+ SWNA+I+G  +     E
Sbjct: 121 KVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKE 180

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A++L+K M M+   KP+E T++  ++AC   G+ + G ++H +I +     N+ + N +I
Sbjct: 181 ALELYKDM-MKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLI 239

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
           D+Y+KCG ++ A  +F  +  +K +++WNT++           AL LF++M R+G  P+D
Sbjct: 240 DLYSKCGEVETACGLFQGL-AKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPND 298

Query: 313 VSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           V+ L+ L AC H G +D G  + ++ +    GV        S++D+  + G ++ A  + 
Sbjct: 299 VTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVF 358

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            S+ +   +  W  ++    ++G    A
Sbjct: 359 DSM-LTRSLSSWNAMIFGFAMHGKANAA 385



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 153/305 (50%), Gaps = 13/305 (4%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +I+ Y  S   E+  A  LF+ +       +N ++ G  H +    A+L +++MLR    
Sbjct: 238 LIDLY--SKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGES 295

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRH--GFLADALLGTTLLDVYAKVGEIVSAK 163
            + +T    L ACA + A+     IH ++ +   G    + L T+L+D+YAK G+I +AK
Sbjct: 296 PNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAK 355

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           +VFD M  R ++SWNA+I G A    A+ A DLF +M+  G+  P+++T +G L+AC H 
Sbjct: 356 QVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGI-DPDDITFVGLLSACSHS 414

Query: 224 GAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           G    G  I   + ++ ++   +     +ID+   CGL  +A E+   +      V W +
Sbjct: 415 GMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCS 474

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVK--PDDV-SYLAALCACNHAGLVDDGVRLFNSMA 339
           ++ A  +H +    +EL E   +  +K  P++  SY+        AG  D   ++   + 
Sbjct: 475 LLKACKMHNN----VELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLN 530

Query: 340 NCGVK 344
           + G+K
Sbjct: 531 DKGIK 535


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/595 (39%), Positives = 355/595 (59%), Gaps = 27/595 (4%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L + CS    +  +H   L+   TT  +  + LF +  KI++    S  +++ YA  +F
Sbjct: 53  SLAETCSDMSQLKQLHAFTLR---TTYPEEPATLF-LYGKILQLS--SSFSDVNYAFRVF 106

Query: 66  RQINAPSTNDFNAVLRGLAHS-SKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLA 123
             I   S+  +N ++R  AH  S+   A + YR+ML RG    D  T  F LKACA +  
Sbjct: 107 DSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG 166

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
             E  Q+H  +++HGF  D  +   L+ +Y   G +  A+KVFDEM  R + SWN++I  
Sbjct: 167 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 226

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-REERLD 242
           L +      A+ LF+ M+    F+P+  T+   L+AC  LG+   G   H ++ R+  +D
Sbjct: 227 LVRFGEYDSALQLFREMQRS--FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVD 284

Query: 243 --MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
             M+V+V N++I+MY KCG L  A +VF  ++ ++ L +WN M++ FA HG    A+  F
Sbjct: 285 VAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAEEAMNFF 343

Query: 301 EQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           ++M   R  V+P+ V+++  L ACNH G V+ G + F+ M  +  ++P ++HYG +VDL+
Sbjct: 344 DRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLI 403

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG-DVEMAEIASRKLV------EMGS 410
            RAG + EA D+V S+ M  D V+W++LL AC   G  VE++E  +R ++      E  +
Sbjct: 404 ARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSN 463

Query: 411 NNC-GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
            NC G +VLLS +YA+  RW+DVG VRK M    ++K PG S IE+ G+ H+FF  D SH
Sbjct: 464 GNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSH 523

Query: 470 VKWREIYEKLDEIMFKIKEYGYAAGTS--CVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
            + ++IY++L  I  +++  GY    S   ++    +  KE +L  HSE+LA+AFGLI+ 
Sbjct: 524 PQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINL 583

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
              T I++FKNLR+C DCH+V KLISKV+N EIIVRDRVRFH FKDG+CSC DYW
Sbjct: 584 PPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/438 (45%), Positives = 303/438 (69%), Gaps = 4/438 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            ++L  + K G +  A  +F EM  RD+ SWN+++A  AQ    +EA+ LF +M+  GV 
Sbjct: 327 NSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV- 385

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           KP E TV+  L+AC HLGA  +G  +H YI + R+++N +V  A++DMYAKCG +  A +
Sbjct: 386 KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQ 445

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ ++  K ++ WNT++   A+HG+   A +LF++M  AGV+P+D++++A L AC+HAG
Sbjct: 446 VFNAME-SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAG 504

Query: 327 LVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           +VD+G +L + M++  G++P ++HYG V+DLL RAG L+EA +++ ++ M  +      L
Sbjct: 505 MVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGAL 564

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LG C+++G+ E+ E+  ++L+ +   + G ++LLSN+YAA ++WDD  +VR  MK   + 
Sbjct: 565 LGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGIS 624

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKE-YGYAAGTSCVLHDIGE 504
           KVPG S IE+ G++H+F   D SH +  +IYEKL+EI  ++K   GY+A T  VL D+ E
Sbjct: 625 KVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEE 684

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
           E+KE+AL  HSEKLA+A+GL+      +I++ KNLR+CRDCH VIKLISKVY REIIVRD
Sbjct: 685 EDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRD 744

Query: 565 RVRFHRFKDGACSCKDYW 582
           R RFH F+DG CSC D+W
Sbjct: 745 RNRFHHFEDGECSCLDFW 762



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 201/393 (51%), Gaps = 22/393 (5%)

Query: 21  HIKQLQAHLTT--TGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNA 78
           H+KQ+ A + T     FQ       S +  F        LAYA  +F  +  P  + +N+
Sbjct: 111 HLKQVHAQIITHHNSPFQLSALASLSALSPFPTF-----LAYAKTIFHHLQNPPPSLYNS 165

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           ++R L+ S  P  A+  Y  ML+   + D +T  F +KAC      +  L +H+HV++ G
Sbjct: 166 LIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSG 225

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
           F  D+ + ++L+ +YA   ++ +AK++F+    RD+ SWNA+I G  +      A  +F 
Sbjct: 226 FECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFD 285

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR--EERLDMNVVVCNAVIDMYA 256
           RM    V   N  T++   A  G         KI E  R  +E  + N+V  N+++  + 
Sbjct: 286 RMVCRDVISWN--TMINGYAIVG---------KIDEAKRLFDEMPERNLVSWNSMLAGFV 334

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG ++ AF +F  + CR  +V+WN+M+  +A  G    AL LF+QM   GVKP + + +
Sbjct: 335 KCGNVEDAFGLFSEMPCR-DVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVV 393

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
           + L AC H G +D G+ L   + +  ++ N     ++VD+  + G++  A  +  ++   
Sbjct: 394 SLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME-S 452

Query: 377 TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            D++ W T++    ++G+V+ A+   +++ E G
Sbjct: 453 KDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAG 485


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/529 (41%), Positives = 326/529 (61%), Gaps = 9/529 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  +F  +   + N +NA++ G A +  P  A+  Y QM       D  T    L A
Sbjct: 287 LICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLA 346

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
            A + +L    ++H  VLRHG   D+ +G +LL +Y   GE  SA+ +FD M  +   SW
Sbjct: 347 SAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSW 406

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NA+I+G +Q  L  +A+ LF+++  +G F+P+++ V+  L AC    A + G + H Y  
Sbjct: 407 NAMISGYSQNGLPEDALILFRKLVSDG-FQPSDIAVVSVLGACSQQSALRLGKETHCYAL 465

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  L  +V V  + IDMYAK G + ++  VFD +K  K L +WN ++ A+ VHGDG  ++
Sbjct: 466 KALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLK-NKDLASWNAIIAAYGVHGDGEESI 524

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDL 356
           ELFE+M + G  PD  +++  L  C+HAGLV++G++ FN M N  G++P ++HY  V+D+
Sbjct: 525 ELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDM 584

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           LGRAGRL +A  +V  +    D  +W +LL  C+ +G++E+ +I + KL+E+   N  ++
Sbjct: 585 LGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENY 644

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI- 475
           V LSNLYA   RWDDV RVR+ +K+  ++K  G S+IE+GG +H F   D    + +E+ 
Sbjct: 645 VSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMS 704

Query: 476 --YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
             + KL++ M KI   GY   TS VLHD+ EE+K   L  HSEKLA+ FGL++T++ T++
Sbjct: 705 MTWRKLEKKMCKI---GYKPNTSAVLHDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTL 761

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++FKNLRIC DCH+  K +S+V  REII+RD  RFH FKDG CSC DYW
Sbjct: 762 RIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 128/251 (50%), Gaps = 3/251 (1%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKACARVLALFETLQIHSH 133
           +N+++ G + +    +      +M+ G      D  T    L  CAR + +   ++IH  
Sbjct: 100 WNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGL 159

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
            ++ G   D  +  +L+D+Y+K G +  A+ +FD+   ++  SWN +I GL       EA
Sbjct: 160 AVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEA 219

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253
            +LF+ M+M+   + NEVTVL  L AC  +   +   ++H Y        + +V N  + 
Sbjct: 220 FNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVA 279

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313
            YAKCG+L  A  VF +++  K++ +WN ++   A +GD  +AL L+ QM  +G+ PD  
Sbjct: 280 AYAKCGMLICAERVFYSME-TKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWF 338

Query: 314 SYLAALCACNH 324
           +  + L A  H
Sbjct: 339 TIGSLLLASAH 349



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 137/296 (46%), Gaps = 6/296 (2%)

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
           +D  T    +KAC   L       IH  V++ G L D  +G  L+ +Y K G + +A KV
Sbjct: 29  ADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKV 88

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM--EGVFKPNEVTVLGALAACGHL 223
           F  M VR++ SWN++I+G ++   + +  D+   M    EG+  P+  T++  L  C   
Sbjct: 89  FHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLL-PDIATLVTVLPVCARE 147

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
              + G +IH    +  L  +V V N+++DMY+KCG L +A  +FD    RK+ V+WNTM
Sbjct: 148 VDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDK-NNRKNAVSWNTM 206

Query: 284 VMAFAVHGDGPRALELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           +      G    A  LF +M  +  ++ ++V+ L  L AC     +     L       G
Sbjct: 207 IGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHG 266

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            + +       V    + G L  A  +  S+   T +  W  L+G C   GD   A
Sbjct: 267 FQYDELVANGFVAAYAKCGMLICAERVFYSMETKT-VNSWNALIGGCAQNGDPRKA 321



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 115/229 (50%), Gaps = 2/229 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E + A  LF  +   S+  +NA++ G + +  P +A++ +R+++    +   +     L 
Sbjct: 387 ESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLG 446

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC++  AL    + H + L+   + D  +  + +D+YAK G I  ++ VFD +  +D+AS
Sbjct: 447 ACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLAS 506

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK-IHEY 235
           WNA+IA         E+++LF+RM+  G   P+  T +G L  C H G  +EG K  +E 
Sbjct: 507 WNAIIAAYGVHGDGEESIELFERMRKVGQM-PDGFTFIGILTVCSHAGLVEEGLKYFNEM 565

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
                ++  +     V+DM  + G LD A  +   +  +     W++++
Sbjct: 566 QNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLL 614



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           +  L S+A+D+F ++  +  F  +  T    + AC        G+ IH  + +  L ++V
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-- 303
            V NA+I MY K G +D A +VF  +  R +LV+WN+++  F+ +G      ++  +M  
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVR-NLVSWNSIISGFSENGFSKDCFDMLVEMMA 125

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
           G  G+ PD  + +  L  C     V  G+R+       G+  +++   S+VD+  + G L
Sbjct: 126 GEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYL 185

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGA 388
            EA  ++   +   + V W T++G 
Sbjct: 186 TEA-QMLFDKNNRKNAVSWNTMIGG 209


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/523 (41%), Positives = 319/523 (60%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF  + A     +NA++ G   +     A+    +M     + DA+T +  L  CA+
Sbjct: 48  ARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQ 107

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           V  +     IH +V++HG   +  +   L+++YAK G +  A+KVF  + ++D+ SWN L
Sbjct: 108 VGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLL-IKDVVSWNTL 166

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G AQ  LASEA++++  M+      PN+ T +  L A  H+GA ++G +IH  + +  
Sbjct: 167 ITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNC 226

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L  +V V   +IDMY KCG LD A  +F  +  RK+ V WN M+  + VHGDG +ALELF
Sbjct: 227 LYSDVFVGTCLIDMYGKCGKLDDAISLFYQVP-RKNSVPWNAMISCYGVHGDGEKALELF 285

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGR 359
            +M    VKPD +++++ L AC+H+GLV D    FN M    G+KP++KHYG +VDL GR
Sbjct: 286 REMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGR 345

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L+ A + +K + +  D   W  LL AC+++G++E+ + AS +L E+ S N G +VLL
Sbjct: 346 AGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLL 405

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YA   +W+ V  VR   ++R ++K PG+S I +   +  F+T +++H K  EIY +L
Sbjct: 406 SNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYREL 465

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
            ++  KIK  GY      VL D+ E+EKE+ L  HSE+LA+A+G+ISTS  T I++FKNL
Sbjct: 466 RDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNL 525

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH V K IS +  REIIVRD  RFH FK G CSC DYW
Sbjct: 526 RVCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 157/285 (55%), Gaps = 8/285 (2%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           +KAC  +L   +  +IH  VL+ GF  D  +  +L+ +Y++ G +  A+K+FD+M  RD 
Sbjct: 4   VKACGDLL---DGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDR 60

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWNA+I+G  Q   A+EA+D+   M++EGV K + +TV   L  C  +G    G  IH 
Sbjct: 61  GSWNAMISGYCQNGNAAEALDIADEMRLEGV-KMDAITVASVLPVCAQVGDILSGKLIHL 119

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           Y+ +  L+  + V NA+I+MYAK G L  A +VF  +   K +V+WNT++  +A +G   
Sbjct: 120 YVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI--KDVVSWNTLITGYAQNGLAS 177

Query: 295 RALELFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
            A+E++  M     + P+  ++++ L A +H G +  G+R+   +    +  ++     +
Sbjct: 178 EAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCL 237

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           +D+ G+ G+L +A  +   V    + V W  ++    ++GD E A
Sbjct: 238 IDMYGKCGKLDDAISLFYQVPR-KNSVPWNAMISCYGVHGDGEKA 281


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/565 (40%), Positives = 330/565 (58%), Gaps = 13/565 (2%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA---HALFRQINAPSTNDFNAVL 80
           QL AHL  TG          S  +   A+S  +  A A   H L      PST   N++L
Sbjct: 54  QLHAHLLRTGLLIFSPVTTTSAFLSLAAVSLPSHRALAVLDHHLTTPHYLPSTFQCNSIL 113

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           R L   S P++A+ +  ++     R +A T +  LK      +L    Q+H++V+  G L
Sbjct: 114 RAL---SDPSDALRFLCRVRALGRRGNAFTLAILLKP---RCSLAHARQLHANVVAEGHL 167

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
            DALL T+L+  YA  G+   A+K+FDEM VRD  +WN LI   A+     +A+ LF+ M
Sbjct: 168 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 227

Query: 201 K-MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           +  +   +P++VT +  L AC  LGA   G+++  Y  E      + V N++I MY +CG
Sbjct: 228 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 287

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            +DKA+ VF     +KS+VTW  M+   A +G G  A+ +FE+M R+ V PD+ ++   L
Sbjct: 288 CVDKAYRVFSGTP-QKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVL 346

Query: 320 CACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS-VSMGT 377
            AC+H+GLVD+G R F+ M    G+KPN++HYG +VDL+GRAG L EA + V + + +  
Sbjct: 347 SACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAP 406

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
           D  +W+TLLGAC+++G V++ E     L+E+ +   GD+VLL N YAA   W  V  +RK
Sbjct: 407 DATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRK 466

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            M+   ++  PG + +E  G +H+F   D +H +  EIYE L EI  +++  GY    S 
Sbjct: 467 LMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSS 526

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
            LHD+  E KE+AL YHSEKLA+AF L+ T +   I++ KNLR+C DCH+  K+ S +Y 
Sbjct: 527 ELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYR 586

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           R +IVRDR RFH F+ G CSC DYW
Sbjct: 587 RIVIVRDRTRFHHFQGGKCSCNDYW 611


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/542 (38%), Positives = 323/542 (59%), Gaps = 5/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  Y  S   ++  A  LFR+IN P    +NA++ G   +     +V  +R++L 
Sbjct: 246 VLTGLISLY--SKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLF 303

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              R  + T    +   +    L     IH   ++ G + +  + T    +Y K+ EI  
Sbjct: 304 SGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDL 363

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+ +FDE   + + +WNA+I+G  Q      A+ LFK M M+  F PN VT+   L+AC 
Sbjct: 364 ARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEM-MKTEFTPNAVTITTILSACA 422

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            LG+   G  +H  I+ E L+ N+ V  A++DMYAKCG + +A+++FD++   K+ VTWN
Sbjct: 423 QLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS-EKNTVTWN 481

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN- 340
           TM+  + +HG G  AL+L+ +M   G  P  V++L+ L AC+HAGLV +G  +F++M N 
Sbjct: 482 TMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNK 541

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             ++P ++HY  +VD+LGR+G+L++A + +K + +     +W TLLGAC ++ D ++A +
Sbjct: 542 YRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARL 601

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           AS +L E+   + G +VLLSN+Y+    +     +R+ +K R + K PG + IEV G  H
Sbjct: 602 ASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPH 661

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F + D+SH    +IY KL+++  K++E GY A T   LHD+ EEEKE A+  HSEKLA+
Sbjct: 662 VFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAI 721

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AFGLI+T     I++ KNLR+C DCH   K ISK+  R I+VRD  RFH FKDG CSC D
Sbjct: 722 AFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGD 781

Query: 581 YW 582
           YW
Sbjct: 782 YW 783



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 190/405 (46%), Gaps = 10/405 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           H+  L AH    G + S +F V S +++ Y     + + YA  +F  +    T  +N ++
Sbjct: 126 HLMLLHAHSIIDG-YGSNVF-VGSALVDLYC--KFSRVVYARKVFDGMPERDTVLWNTMI 181

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF- 139
            GL  +    +++  +R+M+    R D+ T +  L A A +  L   + I    L+ GF 
Sbjct: 182 NGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFG 241

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
             D +L T L+ +Y+K G++ +A+ +F  +   D+ ++NA+I+G         +V LF+ 
Sbjct: 242 FCDYVL-TGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRE 300

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           +   G  + +  T++G +      G       IH +  +  + +N  V  A   +Y K  
Sbjct: 301 LLFSGE-RVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLN 359

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            +D A  +FD     K++V WN M+  +  +G    A+ LF++M +    P+ V+    L
Sbjct: 360 EIDLARHLFDE-SPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTIL 418

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            AC   G +  G  + + + +  ++PN+    ++VD+  + G + EA  +  S+S   + 
Sbjct: 419 SACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS-EKNT 477

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           V W T++    L+G    A     +++ +G N       LS LYA
Sbjct: 478 VTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSA-VTFLSVLYA 521



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 146/297 (49%), Gaps = 14/297 (4%)

Query: 14  NGAVSHIHIKQLQAHLTTTG-QFQ-SKLFPVRSKIIEFYALSPLNELAYAHALFRQINAP 71
           N A +  H+ Q  A     G +F  + L  +  K+ +F A        +A ALF  +  P
Sbjct: 20  NKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATR------HARALFFSVPKP 73

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFALKACARVLALFETLQI 130
               FN ++RG + +  P++++  Y  + R ++ S D  T +FA+ AC+    L   + +
Sbjct: 74  DIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHL---MLL 130

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H+H +  G+ ++  +G+ L+D+Y K   +V A+KVFD M  RD   WN +I GL +    
Sbjct: 131 HAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCF 190

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
            +++ LF+ M  +GV + +  TV   L A   L   K G  I     +        V   
Sbjct: 191 DDSIQLFREMVADGV-RVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTG 249

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
           +I +Y+KCG ++ A  +F  I  R  L+ +N M+  F  +G    +++LF ++  +G
Sbjct: 250 LISLYSKCGDVNTARLLFRRIN-RPDLIAYNAMISGFTANGGTECSVKLFRELLFSG 305


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/595 (39%), Positives = 355/595 (59%), Gaps = 27/595 (4%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L + CS    +  +H   L+   TT  +  + LF +  KI++    S  +++ YA  +F
Sbjct: 44  SLAETCSDMSQLKQLHAFTLR---TTYPEEPATLF-LYGKILQLS--SSFSDVNYAFRVF 97

Query: 66  RQINAPSTNDFNAVLRGLAHS-SKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLA 123
             I   S+  +N ++R  AH  S+   A + YR+ML RG    D  T  F LKACA +  
Sbjct: 98  DSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG 157

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
             E  Q+H  +++HGF  D  +   L+ +Y   G +  A+KVFDEM  R + SWN++I  
Sbjct: 158 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 217

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-REERLD 242
           L +      A+ LF+ M+    F+P+  T+   L+AC  LG+   G   H ++ R+  +D
Sbjct: 218 LVRFGEYDSALQLFREMQRS--FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVD 275

Query: 243 --MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
             M+V+V N++I+MY KCG L  A +VF  ++ ++ L +WN M++ FA HG    A+  F
Sbjct: 276 VAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAEEAMNFF 334

Query: 301 EQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           ++M   R  V+P+ V+++  L ACNH G V+ G + F+ M  +  ++P ++HYG +VDL+
Sbjct: 335 DRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLI 394

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG-DVEMAEIASRKLV------EMGS 410
            RAG + EA D+V S+ M  D V+W++LL AC   G  VE++E  +R ++      E  +
Sbjct: 395 ARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSN 454

Query: 411 NNC-GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
            NC G +VLLS +YA+  RW+DVG VRK M    ++K PG S IE+ G+ H+FF  D SH
Sbjct: 455 GNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSH 514

Query: 470 VKWREIYEKLDEIMFKIKEYGYAAGTS--CVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
            + ++IY++L  I  +++  GY    S   ++    +  KE +L  HSE+LA+AFGLI+ 
Sbjct: 515 PQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINL 574

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
              T I++FKNLR+C DCH+V KLISKV+N EIIVRDRVRFH FKDG+CSC DYW
Sbjct: 575 PPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/595 (40%), Positives = 341/595 (57%), Gaps = 41/595 (6%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA---YAHA 63
           LL +C    A     I ++QA L T+GQ    +  +   +I   + S    LA   YAH 
Sbjct: 10  LLSRCGEARA-----IVRIQAALLTSGQLPRSV-ELHDALIRALSRSARPHLALPLYAH- 62

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSK-PTNAVLWYRQMLRGSHRSDALTC-SFALKACARV 121
           L R    P+ +   ++L+ +A S   P  AVL             ALT  + A+K     
Sbjct: 63  LLRAGLLPTPHTLPSLLKSMALSPAVPGAAVL-------------ALTVHTHAVKLGLDR 109

Query: 122 LALFETLQIHSHVLRHGFLADALL------------GTTLLDVYAKVGEIVSAKKVFDEM 169
             L     I  H    G LAD LL              TL+  YA+ G +  A+ +FDEM
Sbjct: 110 FVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEM 169

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
             R+  SW+A++ G  Q     EA+ +F RM+ E V +P++  ++G LAAC   GA ++G
Sbjct: 170 PARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDV-RPDDTVLVGVLAACAQHGALEQG 228

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
             +H Y++   + +N+    A++DMY+KCG +  A +VF+ ++  K+++ W TM+   A+
Sbjct: 229 KWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQ-YKNVLAWTTMIKGLAM 287

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMK 348
           HG G  A+ LF QM  +G++PDD++++  LCAC HAGLVD G  LF+SM    G+KP ++
Sbjct: 288 HGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIE 347

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
           HYG +VDLL R G L EA ++++ + M  D ++W  L+  C+ + +VE AE  ++  + +
Sbjct: 348 HYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILL 407

Query: 409 GSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKS 468
             +  G +VLLSN+YAA  R      +R  M+ + V K PG S +EV GVIH+F   D S
Sbjct: 408 EPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLS 467

Query: 469 HVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
           H + ++I  K  EI  +I+ E GY      VL DI EEEKE AL  HSEKLA+AF LIS 
Sbjct: 468 HPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAIAFALISI 527

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           S+   I++FKNLR+C DCH V KLISKVY REI+VRDR RFH FK+G CSCKDYW
Sbjct: 528 SDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKDYW 582


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/595 (39%), Positives = 355/595 (59%), Gaps = 27/595 (4%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L + CS    +  +H   L+   TT  +  + LF +  KI++    S  +++ YA  +F
Sbjct: 110 SLAETCSDMSQLKQLHAFTLR---TTYPEEPATLF-LYGKILQLS--SSFSDVNYAFRVF 163

Query: 66  RQINAPSTNDFNAVLRGLAHS-SKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLA 123
             I   S+  +N ++R  AH  S+   A + YR+ML RG    D  T  F LKACA +  
Sbjct: 164 DSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG 223

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
             E  Q+H  +++HGF  D  +   L+ +Y   G +  A+KVFDEM  R + SWN++I  
Sbjct: 224 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 283

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-REERLD 242
           L +      A+ LF+ M+    F+P+  T+   L+AC  LG+   G   H ++ R+  +D
Sbjct: 284 LVRFGEYDSALQLFREMQRS--FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVD 341

Query: 243 --MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
             M+V+V N++I+MY KCG L  A +VF  ++ ++ L +WN M++ FA HG    A+  F
Sbjct: 342 VAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAEEAMNFF 400

Query: 301 EQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           ++M   R  V+P+ V+++  L ACNH G V+ G + F+ M  +  ++P ++HYG +VDL+
Sbjct: 401 DRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLI 460

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG-DVEMAEIASRKLV------EMGS 410
            RAG + EA D+V S+ M  D V+W++LL AC   G  VE++E  +R ++      E  +
Sbjct: 461 ARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSN 520

Query: 411 NNC-GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
            NC G +VLLS +YA+  RW+DVG VRK M    ++K PG S IE+ G+ H+FF  D SH
Sbjct: 521 GNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSH 580

Query: 470 VKWREIYEKLDEIMFKIKEYGYAAGTS--CVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
            + ++IY++L  I  +++  GY    S   ++    +  KE +L  HSE+LA+AFGLI+ 
Sbjct: 581 PQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINL 640

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
              T I++FKNLR+C DCH+V KLISKV+N EIIVRDRVRFH FKDG+CSC DYW
Sbjct: 641 PPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/512 (42%), Positives = 319/512 (62%), Gaps = 9/512 (1%)

Query: 75   DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHV 134
              N VLR  A S +P  A+  +R+ L      D  T    ++ACAR+LAL E   +H+  
Sbjct: 774  PLNTVLRIAAGSPRPRVALELHRRRLA---LPDTHTYPPLIQACARLLALREGECLHAEA 830

Query: 135  LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR--DIASWNALIAGLAQGNLASE 192
             ++GF+    +  +L+ +Y   G   SA KVFDEM VR  ++ SWN+++   A     +E
Sbjct: 831  AKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNE 890

Query: 193  AVDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
             + +F   +M GV F P+  T++  L AC   GA   G ++H Y+ +  L  N  V NA+
Sbjct: 891  VLTVF--WEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNAL 948

Query: 252  IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
            ID+YAKCG ++ A  +F+ +   +++V+W ++++  A +G G  ALELF  M R  + P 
Sbjct: 949  IDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPT 1008

Query: 312  DVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
            +++ +  L AC+H GLVDDG R F+ M  + G+ P ++H G +VDLLGRAGR++EA D +
Sbjct: 1009 EITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYI 1068

Query: 371  KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
             ++ +  + V+W+TLLG+C ++  +E+ ++A  +LVE+   + GD+VLLSNLYAA   W 
Sbjct: 1069 ITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWA 1128

Query: 431  DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
            DV  +RK M    V+K PG S +E+   +++F   D+SH +  +IYE L EI  +++  G
Sbjct: 1129 DVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREG 1188

Query: 491  YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
            Y   TS VL DI EEEKE AL YHSE+LA+AF L+ +     I++ KNLR+C DCH    
Sbjct: 1189 YIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFN 1248

Query: 551  LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            LISKVY+REIIVRDR RFH F+ GACSCKDYW
Sbjct: 1249 LISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 132/253 (52%), Gaps = 7/253 (2%)

Query: 42   VRSKIIEFYALSPLNELAYAHALFRQINAPSTN--DFNAVLRGLAHSSKPTNAVLWYRQM 99
            V++ ++  Y    L E   AH +F ++     N   +N++L   A + +P   +  + +M
Sbjct: 841  VQNSLVHLYGACGLFE--SAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEM 898

Query: 100  LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
            L      D  T    L ACA   AL    ++H +V + G + ++ +   L+D+YAK G +
Sbjct: 899  LGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSV 958

Query: 160  VSAKKVFDEMGV-RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
              A+++F+EMG+ R + SW +LI GLA      EA++LF  M+ E +  P E+T++G L 
Sbjct: 959  NDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLV-PTEITMVGVLY 1017

Query: 219  ACGHLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
            AC H G   +G +  + ++E+  +   +     ++D+  + G +++A++    +    + 
Sbjct: 1018 ACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNA 1077

Query: 278  VTWNTMVMAFAVH 290
            V W T++ + A+H
Sbjct: 1078 VVWRTLLGSCAMH 1090


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/565 (40%), Positives = 330/565 (58%), Gaps = 13/565 (2%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA---HALFRQINAPSTNDFNAVL 80
           QL AHL  TG          S  +   A+S  +  A A   H L      PST   N++L
Sbjct: 40  QLHAHLLRTGLLIFSPVTTTSAFLSLAAVSLPSHRALAVLDHHLTTPHYLPSTFQCNSIL 99

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           R L   S P++A+ +  ++     R +A T +  LK      +L    Q+H++V+  G L
Sbjct: 100 RAL---SDPSDALRFLCRVRALGRRGNAFTLAILLKP---RCSLAHARQLHANVVAEGHL 153

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
            DALL T+L+  YA  G+   A+K+FDEM VRD  +WN LI   A+     +A+ LF+ M
Sbjct: 154 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 213

Query: 201 K-MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           +  +   +P++VT +  L AC  LGA   G+++  Y  E      + V N++I MY +CG
Sbjct: 214 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 273

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            +DKA+ VF     +KS+VTW  M+   A +G G  A+ +FE+M R+ V PD+ ++   L
Sbjct: 274 CVDKAYRVFSGTP-QKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVL 332

Query: 320 CACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS-VSMGT 377
            AC+H+GLVD+G R F+ M    G+KPN++HYG +VDL+GRAG L EA + V + + +  
Sbjct: 333 SACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAP 392

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
           D  +W+TLLGAC+++G V++ E     L+E+ +   GD+VLL N YAA   W  V  +RK
Sbjct: 393 DATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRK 452

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            M+   ++  PG + +E  G +H+F   D +H +  EIYE L EI  +++  GY    S 
Sbjct: 453 LMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSS 512

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
            LHD+  E KE+AL YHSEKLA+AF L+ T +   I++ KNLR+C DCH+  K+ S +Y 
Sbjct: 513 ELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYR 572

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           R +IVRDR RFH F+ G CSC DYW
Sbjct: 573 RIVIVRDRTRFHHFQGGKCSCNDYW 597


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/575 (38%), Positives = 335/575 (58%), Gaps = 35/575 (6%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I FYA     +LAY      + N      +N+++ G      P  A+  + +M  
Sbjct: 277 VLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRN 336

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA-------------------- 141
                +A+T    + ACA+ + L    ++  ++ R+  +                     
Sbjct: 337 EGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEI 396

Query: 142 -----------DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
                      D +  TT++D YAK+ E   A+ +FD M  +DI +WN LI+G  Q    
Sbjct: 397 ARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRP 456

Query: 191 SEAVDLFKRMKM-EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
            EA+ +F+ +++ +   +P++VT+L  L+AC  LGA   G+ IH YI++ER+ +N  +  
Sbjct: 457 KEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLAT 516

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           ++IDMY+K G ++KA EVF +I   K +  W+ M+   A+HG G  A+ELF  M    VK
Sbjct: 517 SLIDMYSKSGDVEKAIEVFHSIG-NKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVK 575

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACD 368
           P+ V++   LCAC+H+GLVD+G RLF+ M    GV P  KHY  +VD+LGRAG L+EA  
Sbjct: 576 PNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALK 635

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428
            ++ + +     +W  LLGAC ++G++E+AE A  +L+E+   N G +VLLSNLYA    
Sbjct: 636 FIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGD 695

Query: 429 WDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKE 488
           W+ V  +R+ M++  +KK  G S IE+ G +H+F   D +H   R+IY KLDEIM +++ 
Sbjct: 696 WEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRS 755

Query: 489 YGYAAGTSCVLHDIGEEE-KENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHD 547
           +GY A T C+L  + EEE KE AL  HSEK+A+AFGLI      +I++ KNLR+CRDCH 
Sbjct: 756 HGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHT 815

Query: 548 VIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V K++SKVY R+I++RDR RFH F  G CSC+DYW
Sbjct: 816 VAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 202/428 (47%), Gaps = 44/428 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           AL Q+C+S   +  IH + L+ +        S+LF          A S  + L YA  +F
Sbjct: 144 ALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAA-------AFSSFSALDYARKVF 196

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLAL 124
            QI  P+   +N ++R LA SS P  +VL + +ML  S    +  T    +KA A     
Sbjct: 197 DQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCF 256

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD--EMGVRDIASWNALIA 182
                +H   ++  F  D  +  +L+  YA  G +  A  VF+  E   +DI SWN+++ 
Sbjct: 257 LVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVT 316

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G  QG    +A+DLF+RM+ EGV  PN VT++  ++AC        G K+ +YI    + 
Sbjct: 317 GFVQGGYPDKALDLFERMRNEGV-HPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMM 375

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK------------------------------ 272
           MN+ VCNA IDM+ KCG ++ A  +FDN++                              
Sbjct: 376 MNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSM 435

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFE--QMGRAGVKPDDVSYLAALCACNHAGLVDD 330
            RK +  WN ++  +   G    AL +F   Q+ ++G +PD V+ L+ L AC   G +D 
Sbjct: 436 PRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDI 495

Query: 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
           G  +   +    ++ N     S++D+  ++G +++A ++  S+    D+ +W  ++    
Sbjct: 496 GEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG-NKDVFVWSAMIAGLA 554

Query: 391 LYGDVEMA 398
           ++G  E A
Sbjct: 555 MHGRGEAA 562


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/455 (44%), Positives = 309/455 (67%), Gaps = 4/455 (0%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           IHS V+R GF +   +  +LL +YA  G++ SA KVFD+M  +D+ +WN++I G A+   
Sbjct: 10  IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 69

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             EA+ L+  M  +G+ KP+  T++  L+AC  +GA   G ++H Y+ +  L  N+   N
Sbjct: 70  PEEALALYTEMNSKGI-KPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSN 128

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGV 308
            ++D+YA+CG +++A  +FD +   K+ V+W ++++  AV+G G  A+ELF+ M    G+
Sbjct: 129 VLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 187

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
            P +++++  L AC+H G+V +G   F  M     ++P ++H+G +VDLL RAG++++A 
Sbjct: 188 LPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAY 247

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
           + +KS+ M  ++V+W+TLLGAC ++GD ++AE A  +++++  N+ GD+VLLSN+YA+ +
Sbjct: 248 EYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQ 307

Query: 428 RWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487
           RW DV ++RK M    VKKVPG S +EVG  +H+F   DKSH +   IY KL E+  +++
Sbjct: 308 RWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLR 367

Query: 488 EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHD 547
             GY    S V  D+ EEEKENA+ YHSEK+A+AF LIST E + I V KNLR+C DCH 
Sbjct: 368 SEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHL 427

Query: 548 VIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            IKL+SKVYNREI+VRDR RFH FK+G+CSC+DYW
Sbjct: 428 AIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 137/255 (53%), Gaps = 3/255 (1%)

Query: 39  LFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQ 98
           L  V++ ++  YA     ++A A+ +F ++       +N+V+ G A + KP  A+  Y +
Sbjct: 22  LIYVQNSLLHLYA--NCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTE 79

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           M     + D  T    L ACA++ AL    ++H ++++ G   +      LLD+YA+ G 
Sbjct: 80  MNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGR 139

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           +  AK +FDEM  ++  SW +LI GLA      EA++LFK M+      P E+T +G L 
Sbjct: 140 VEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILY 199

Query: 219 ACGHLGAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
           AC H G  KEG +    +REE +++  +     ++D+ A+ G + KA+E   ++  + ++
Sbjct: 200 ACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNV 259

Query: 278 VTWNTMVMAFAVHGD 292
           V W T++ A  VHGD
Sbjct: 260 VIWRTLLGACTVHGD 274



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G+ IH  +        + V N+++ +YA CG +  A++VFD +   K LV WN+++  FA
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMP-EKDLVAWNSVINGFA 65

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK 348
            +G    AL L+ +M   G+KPD  + ++ L AC   G +  G R+   M   G+  N+ 
Sbjct: 66  ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLH 125

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
               ++DL  R GR++EA  +   + +  + V W +L+
Sbjct: 126 SSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 162


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/524 (40%), Positives = 331/524 (63%), Gaps = 8/524 (1%)

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS--DALTCSFALKACARVL 122
           F +I  P+     A+  G   ++   +++  +R M+     S  D      A  A ARV 
Sbjct: 152 FDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVP 211

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG--EIVSAKKVFDEMGVRDIASWNAL 180
               T  +H+ + + GF  +A +  T+LD YAK G  ++  A+KVFD M  RD+ SWN++
Sbjct: 212 DRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSM 270

Query: 181 IAGLAQGNLASEAVDLFKRM-KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           IA  AQ  +++EA+ L+ +M  + G  K N V +   L AC H GA + G +IH  +   
Sbjct: 271 IALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRM 330

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            L+ NV V  +++DMY+KCG ++ A   F  IK  K++++W+ M+  + +HG G  ALE+
Sbjct: 331 GLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMHGRGQEALEI 389

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLG 358
           F +M R+G++P+ +++++ L AC+HAGL+D+G   +N+M    G++  ++HYG +VDLLG
Sbjct: 390 FTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLG 449

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG L EA  ++K + +  D  +W  LL AC+++ +VE+AE++ ++L E+ ++N G +VL
Sbjct: 450 RAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVL 509

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YA    W DV R+R  +K R ++K PG+S  E+ G I+ F+  DKSH +  EIY  
Sbjct: 510 LSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSY 569

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L++++ +++E GY   T  VLHD+ EEEKE+AL  HSEKLAVAF L+++   + I + KN
Sbjct: 570 LEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKN 629

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH  +K I+K+  REII+RD  RFH FKDG CSC+DYW
Sbjct: 630 LRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 134/271 (49%), Gaps = 9/271 (3%)

Query: 129 QIHSHVLRHG-FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
           Q+H   LR G F +D    + LL +Y      + A++ FDE+   +     A+ +G  + 
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRN 173

Query: 188 NLASEAVDLFKRM-KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
           NL   +++LF+ M   +     +E   L A +A   +        +H  I +   + N  
Sbjct: 174 NLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAG 233

Query: 247 VCNAVIDMYAKCGL--LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           V N ++D YAK G   L+ A +VFD ++  + +V+WN+M+  +A +G    A+ L+ +M 
Sbjct: 234 VVNTMLDSYAKGGSRDLEVARKVFDTME--RDVVSWNSMIALYAQNGMSAEAIGLYSKML 291

Query: 305 R--AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
               G+K + V+  A L AC HAG +  G R+ N +   G++ N+    S+VD+  + GR
Sbjct: 292 NVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGR 351

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           ++ A    + +    +++ W  ++    ++G
Sbjct: 352 VEMASRAFRKIK-EKNILSWSAMITGYGMHG 381


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/578 (39%), Positives = 352/578 (60%), Gaps = 17/578 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           L++ CS+ GAV     K++  H+   G ++ K+F V + ++  Y     N L  A  LF 
Sbjct: 61  LIKCCSARGAVQEG--KRVHEHIFCKG-YEPKMFVVNT-LLNMYV--KFNLLEEAEDLFD 114

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVL-WYRQMLRGSHRSDALTCSFALKACARVLALF 125
           ++  P  N  +      A+S+K  +  L     M R   R +  T S  L+AC     L 
Sbjct: 115 EM--PERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACD---GLP 169

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              Q+H  +++ G  +D  + + L+DVY+K  ++ +A  VFDEM  RD+  WN++I G A
Sbjct: 170 NLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFA 229

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q +  +EA++LFKRMK  G F  ++ T+   L AC  L   + G ++H ++   + D ++
Sbjct: 230 QNSDGNEALNLFKRMKRAG-FLADQATLTSVLRACTGLALLELGRQVHVHVL--KFDQDL 286

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           ++ NA+IDMY KCG L+ A   F  +   K +++W+TMV   A +G   +ALELFE M  
Sbjct: 287 ILNNALIDMYCKCGSLEDANSAFSRM-VEKDVISWSTMVAGLAQNGYSRQALELFESMKE 345

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQ 364
           +G +P+ ++ L  L AC+HAGLV+ G   F SM    GV P  +HYG ++DLLGRAGRL 
Sbjct: 346 SGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLD 405

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           EA  ++  +    D V W+TLLGAC+++ +V++A  A++K++E+   + G ++LLSN+YA
Sbjct: 406 EAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYA 465

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
             +RW+DV  VRK M NR ++K PG S+IEV   IH F   D SH K  EI ++L++++ 
Sbjct: 466 NTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIE 525

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
           ++   GY   T+ VL D+  E+KE++L YHSEKLA+ FGL++ S   ++++ KNLRIC D
Sbjct: 526 RVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGD 585

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH   K++S++ +R I++RD +R+H F+DG CSC DYW
Sbjct: 586 CHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 153/305 (50%), Gaps = 9/305 (2%)

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
           +DA+T S  +K C+   A+ E  ++H H+   G+     +  TLL++Y K   +  A+ +
Sbjct: 53  ADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDL 112

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FDEM  R++ SW  +I+  +   L  +A+     M  EGV +PN  T    L AC  L  
Sbjct: 113 FDEMPERNVVSWTTMISAYSN-KLNDKALKCLILMFREGV-RPNMFTYSSVLRACDGLPN 170

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            ++   +H  I +  L+ +V V +A+ID+Y+K   LD A  VFD +  R  LV WN+++ 
Sbjct: 171 LRQ---LHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTR-DLVVWNSIIG 226

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
            FA + DG  AL LF++M RAG   D  +  + L AC    L++ G ++   +       
Sbjct: 227 GFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQ 284

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
           ++    +++D+  + G L++A +   S  +  D++ W T++      G    A      +
Sbjct: 285 DLILNNALIDMYCKCGSLEDA-NSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESM 343

Query: 406 VEMGS 410
            E GS
Sbjct: 344 KESGS 348



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN 346
           F    D  RA+   + M R GV  D ++Y   +  C+  G V +G R+   +   G +P 
Sbjct: 30  FCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPK 89

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           M    +++++  +   L+EA D+   +    ++V W T++ A
Sbjct: 90  MFVVNTLLNMYVKFNLLEEAEDLFDEMP-ERNVVSWTTMISA 130


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/544 (39%), Positives = 336/544 (61%), Gaps = 8/544 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML- 100
           +++ +++ YA   L  L YA  +F  +N  +   ++A++ G       ++A+  Y  ML 
Sbjct: 247 LQTALLDMYAKCHL--LFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLC 304

Query: 101 -RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
             G + + A T +  L+ACA++  L    ++H H+++ G   D  +G +L+ +YAK G +
Sbjct: 305 IYGLNPTPA-TLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIM 363

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
            +A    DEM  +D  S++A+I+G  Q   A +A+ +F++M+  G+  P   T++  L A
Sbjct: 364 DNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGI-APYLETMIALLPA 422

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
           C HL A + G   H Y        +  +CNA+IDMY+KCG +  + E+FD ++ R  +++
Sbjct: 423 CSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNR-DIIS 481

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           WNTM++ + +HG    AL LF+++   G+KPDDV+ +A L AC+H+GLV +G   F+SM+
Sbjct: 482 WNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMS 541

Query: 340 -NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            N  +KP M HY  +VDLL RAG L EA   ++ +    ++ +W  LL AC+ + ++EM 
Sbjct: 542 QNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMG 601

Query: 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGV 458
           E  S+K+  +G    G+FVL+SN+Y++  RWDD   +R   ++   KK PG S++E+ GV
Sbjct: 602 EQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGV 661

Query: 459 IHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKL 518
           IH F    +SH +   I +KL E++ ++K+ GY A +S VLHD+ EEEKE  L YHSEK+
Sbjct: 662 IHVFIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKV 721

Query: 519 AVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSC 578
           A+AFG+++TS ++ I V KNLRIC DCH  IK I+ +  REI VRD  RFH FKDG C+C
Sbjct: 722 AIAFGILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNC 781

Query: 579 KDYW 582
           +D+W
Sbjct: 782 QDFW 785



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 169/358 (47%), Gaps = 8/358 (2%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           NE+  A  +F QI  PS   +N ++R  A S     ++  Y  ML+        T  F L
Sbjct: 55  NEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLL 114

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RD 173
           KAC+ + AL     IH+H    G   D  + T LL +YAK G +  A+ +F+ +    RD
Sbjct: 115 KACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRD 174

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           I +WNA+IA  +   L ++ +    +M+  GV  PN  T++  L   G   A  +G  IH
Sbjct: 175 IVAWNAMIAAFSFHALHAQTIHSVAQMQQAGV-TPNSSTLVSILPTIGQANALHQGKAIH 233

Query: 234 E-YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
             YIR    D NVV+  A++DMYAKC LL  A ++F+ +  +K+ V W+ M+  + +H  
Sbjct: 234 AYYIRNFFFD-NVVLQTALLDMYAKCHLLFYARKIFNTVN-KKNDVCWSAMIGGYVLHDS 291

Query: 293 GPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
              AL L++ M    G+ P   +    L AC     +  G +L   M   G+  +     
Sbjct: 292 ISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGN 351

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           S++ +  + G +  A   +  + +  D V +  ++  C   G  E A +  R++   G
Sbjct: 352 SLISMYAKCGIMDNAVGFLDEM-IAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSG 408



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 179/389 (46%), Gaps = 10/389 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL+ CSS  A+    +    AH+       S    V + ++  YA      L  A  LF 
Sbjct: 113 LLKACSSLQALQLGRLIHTHAHILGL----SMDLYVSTALLHMYA--KCGHLYQAQTLFN 166

Query: 67  QINAPSTN--DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
            I+    +   +NA++   +  +     +    QM +     ++ T    L    +  AL
Sbjct: 167 SISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANAL 226

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
            +   IH++ +R+ F  + +L T LLD+YAK   +  A+K+F+ +  ++   W+A+I G 
Sbjct: 227 HQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGY 286

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
              +  S+A+ L+  M       P   T+   L AC  L   K G K+H ++ +  +D++
Sbjct: 287 VLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLD 346

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
             V N++I MYAKCG++D A    D +   K  V+++ ++     +G   +AL +F QM 
Sbjct: 347 TTVGNSLISMYAKCGIMDNAVGFLDEM-IAKDTVSYSAIISGCVQNGYAEKALLIFRQMQ 405

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
            +G+ P   + +A L AC+H   +  G          G   +     +++D+  + G++ 
Sbjct: 406 SSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKIT 465

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            + +I   +    D++ W T++    ++G
Sbjct: 466 ISREIFDRMQ-NRDIISWNTMIIGYGIHG 493



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 114/254 (44%), Gaps = 3/254 (1%)

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
            T L   +    EI  A+ VFD++    +  WN +I   A      +++ L+  M   GV
Sbjct: 44  ATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGV 103

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
             P   T    L AC  L A + G  IH +     L M++ V  A++ MYAKCG L +A 
Sbjct: 104 -TPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQ 162

Query: 266 EVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
            +F++I  + + +V WN M+ AF+ H    + +    QM +AGV P+  + ++ L     
Sbjct: 163 TLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQ 222

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
           A  +  G  +           N+    +++D+  +   L  A  I  +V+   D V W  
Sbjct: 223 ANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKND-VCWSA 281

Query: 385 LLGACQLYGDVEMA 398
           ++G   L+  +  A
Sbjct: 282 MIGGYVLHDSISDA 295


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/563 (39%), Positives = 330/563 (58%), Gaps = 34/563 (6%)

Query: 52  LSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTC 111
           L  + ++  A  LF +++      ++A++ G   +     A++ + +M     R D +  
Sbjct: 248 LGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVV 307

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF----- 166
              L ACA +  +     IH  V+R G  +   L   L+ +Y+  GEI+ A+K+F     
Sbjct: 308 VSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHN 367

Query: 167 --------------------------DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
                                     D M  +DI SW+A+I+G AQ +  SE + LF  M
Sbjct: 368 LDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEM 427

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           ++ G  +P+E  ++  ++AC HL A  +G  +H YIR+  L +NV++   ++DMY KCG 
Sbjct: 428 QL-GQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGC 486

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           ++ A EVF+ ++  K + +WN +++  AV+G   R+L++F +M   GV P++++++  L 
Sbjct: 487 VENALEVFNGME-EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLG 545

Query: 321 ACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC H GLVD+G   F SM    G++PN+KHYG +VDLLGRAG L EA  +++S+ M  D+
Sbjct: 546 ACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDV 605

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
             W  LLGAC+ +GD EM E   RKL+E+  ++ G  VLLSN++A+   W+DV  VR  M
Sbjct: 606 ATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMM 665

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           K + V K PG S IE  GV+H+F   DK+H    ++   L+E+  ++K  GYA  T+ V 
Sbjct: 666 KQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVS 725

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
            DI EEEKE  L  HSEKLA+AFGL++ S  T I++ KNLRIC DCH   KLISK Y RE
Sbjct: 726 LDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYARE 785

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           I+VRDR RFH FK+GACSC DYW
Sbjct: 786 IVVRDRHRFHYFKEGACSCMDYW 808



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 176/388 (45%), Gaps = 51/388 (13%)

Query: 18  SHIH----IKQLQ---AHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINA 70
           +H+H    +KQ     + +  TG F S  F   S++++F   SP   L Y+  +F +I  
Sbjct: 46  THLHNCHNLKQFNRILSQMILTG-FISDTFAA-SRLLKFSTDSPFIGLDYSLQIFDRIEN 103

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
            +   +N ++R    S+    A+L Y+ M++ +   D  T    ++ACA  L  F   +I
Sbjct: 104 SNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEI 163

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H HVL+ GF +D  +  TL+++YA  G +  A+K+FDE  V D  SWN+++AG  +    
Sbjct: 164 HDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDV 223

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
            EA  +F +M    +   N + VL                                    
Sbjct: 224 EEAKLIFDQMPQRNIVASNSMIVL------------------------------------ 247

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
                 K G + +A+++F+ +   K +V+W+ ++  +  +G    AL +F +M   G++ 
Sbjct: 248 ----LGKMGQVMEAWKLFNEMD-EKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL 302

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           D+V  ++ L AC H  +V  G  +   +   G++  +    +++ +   +G + +A  + 
Sbjct: 303 DEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLF 362

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              S   D + W +++  C   G VE A
Sbjct: 363 NG-SHNLDQISWNSMISGCMKCGSVEKA 389



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           LD + ++FD I+     + WNTM+ A+       +AL L++ M +  V PD+ +Y   + 
Sbjct: 91  LDYSLQIFDRIENSNGFM-WNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQ 149

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           AC    L   G  + + +   G   ++    +++++    G +++A  +    S   D V
Sbjct: 150 ACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDE-SPVLDSV 208

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVE---MGSNNCGDFVLLSNLYAAYERW 429
            W ++L      GDVE A++   ++ +   + SN+    VLL  +    E W
Sbjct: 209 SWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSM--IVLLGKMGQVMEAW 258


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/525 (40%), Positives = 332/525 (63%), Gaps = 5/525 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F +I       +NA++ G A +     A+  +++M++ + + D  T    + ACA+
Sbjct: 188 AQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQ 247

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             ++    Q+HS +  HG  ++  +   L+D+Y+K GE+ +A  +F  +  +D+ SWN +
Sbjct: 248 SGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTM 307

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI--RE 238
           I G    NL  EA+ LF+ M   G   PN+VT+L  L AC  LGA   G  IH YI  R 
Sbjct: 308 IGGYTHLNLYKEALLLFQEMLRSGE-NPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRI 366

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           + +     +  ++IDMYAKCG ++ A +VF+++  R +L   N M+  FA+HG    A +
Sbjct: 367 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHR-TLSACNAMIFGFAMHGRANAAFD 425

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           +F +M + G++PDD++++  L AC+H+G++D G R+F SM  N  + P ++HYG ++DLL
Sbjct: 426 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLL 485

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           G  G  +EA +++ +++M  D V+W +LL AC+++G+VE+ E  ++KL+++   N G +V
Sbjct: 486 GHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYV 545

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YA   RW++V  +R  + ++ +KKVPG S IE+  V+H+F   DK H + REIY 
Sbjct: 546 LLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            L+E+   ++E G+   TS VL ++ EE K+ AL +HSEKLA+AFGLIST   T + + K
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVK 665

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+CR+CH+  KLISK+Y REII RDR RFH F+DG CSC DYW
Sbjct: 666 NLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/402 (31%), Positives = 206/402 (51%), Gaps = 43/402 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSP-LNELAYAHAL 64
           +LL  C +  ++  IH + ++  L  T    S+L       +EF  LSP  + L YA ++
Sbjct: 7   SLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRL-------LEFCILSPNFDGLPYAISV 59

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F  I  P+   +N + RG A SS P +A+  Y  M+      ++ T  F LK+CA++   
Sbjct: 60  FETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVS 119

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE-------------------------- 158
            E  QIH HVL+ G+  D  + T+L+ +Y K G                           
Sbjct: 120 KEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGY 179

Query: 159 -----IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
                I SA+K+FDE+ V+D+ SWNA+I+G A      EA+DLFK M M+   KP+E T+
Sbjct: 180 ASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEM-MKTNVKPDESTM 238

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           +  ++AC   G+ + G ++H +I +  L  N+ + NA+ID+Y+KCG ++ A  +F  +  
Sbjct: 239 VTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLS- 297

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG-- 331
            K +++WNTM+  +        AL LF++M R+G  P+DV+ L+ L AC   G +D G  
Sbjct: 298 NKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRW 357

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
           + ++      GV        S++D+  + G ++ A  +  S+
Sbjct: 358 IHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 399



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 139/267 (52%), Gaps = 10/267 (3%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +I+ Y  S   E+  A  LF+ ++      +N ++ G  H +    A+L +++MLR    
Sbjct: 276 LIDLY--SKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGEN 333

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRH--GFLADALLGTTLLDVYAKVGEIVSAK 163
            + +T    L ACA++ A+     IH ++ +   G    + L T+L+D+YAK G+I +A 
Sbjct: 334 PNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAH 393

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           +VF+ M  R +++ NA+I G A    A+ A D+F RM+  G+ +P+++T +G L+AC H 
Sbjct: 394 QVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGI-EPDDITFVGLLSACSHS 452

Query: 224 GAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           G    G +I   + +  ++   +     +ID+    GL  +A E+ + +      V W +
Sbjct: 453 GMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCS 512

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVK 309
           ++ A  +HG+    +EL E   +  +K
Sbjct: 513 LLKACKMHGN----VELGESFAQKLIK 535



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 66/139 (47%), Gaps = 2/139 (1%)

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L  A  VF+ I+   +L+ WNTM    A+  D   A++L+  M   G+ P+  ++   L 
Sbjct: 53  LPYAISVFETIQ-EPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLK 111

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           +C    +  +G ++   +   G + ++  + S++ +  + GR ++A  +    S   D+V
Sbjct: 112 SCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSH-RDVV 170

Query: 381 LWQTLLGACQLYGDVEMAE 399
            +  L+      G +E A+
Sbjct: 171 SYTALITGYASRGYIESAQ 189


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/642 (36%), Positives = 360/642 (56%), Gaps = 71/642 (11%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           ++LL  C S       ++KQ+ A++  TG     +  +  K++   A+S  + L YA  L
Sbjct: 9   SSLLTNCRSLK-----NLKQVHAYVCKTGLDTDPI--IAGKLLLHSAVSVPDALDYARRL 61

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFALKACARVLA 123
           F     P     N ++RGLA S  P N+++ + +M R  +   D+ + +F LKA A   +
Sbjct: 62  FLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRS 121

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE--------------- 168
           L   +Q+H   + HG      +GTTL+ +Y++ G +  AKKVF+E               
Sbjct: 122 LESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTA 181

Query: 169 ----------------MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME--------- 203
                           M  R++ SWN ++AG  +      A  LF  M ++         
Sbjct: 182 CFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMI 241

Query: 204 ------GVF---------------KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
                 G F               +PNEV++ GAL+AC   GA + G  +H +I +    
Sbjct: 242 VGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFL 301

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
             V V NA++D Y+KCG +  A  VF+ +  ++S+V+W +M+   A+HG G  A++LF +
Sbjct: 302 WMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHE 361

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAG 361
           M  +G++PD +++++ L AC+HAGL++ G   F  M +   ++P ++HYG +VDL GRAG
Sbjct: 362 MEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAG 421

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           +L +A + +  + +    ++W+TLLGAC ++G+V++AE    +L E+  NN GD VLLSN
Sbjct: 422 QLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSN 481

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YA   +W DV  VR++M ++ + K PG+S IEV  +++ F   +  +    E YEKL E
Sbjct: 482 IYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKE 541

Query: 482 IMFKIKEYG-YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           IM K++  G Y      VLHDI +EEKE+++  HSEKLAVAFG+    + + I++ KNLR
Sbjct: 542 IMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLR 601

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +CRDCH V+KLISKVY  EI+VRDR RFH FK G+CSC+DYW
Sbjct: 602 VCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/574 (40%), Positives = 351/574 (61%), Gaps = 19/574 (3%)

Query: 21  HIKQLQAH-LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAV 79
            +KQL A  + TT       F + S+I+ F   S L++L YA  +F QI  P++  +NA+
Sbjct: 41  QLKQLHAQTIRTTSSHHPNTFFLYSRILHF---SSLHDLRYAFRVFHQIENPNSFMWNAL 97

Query: 80  LRGLAHSS-KPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
           +R  A S+ +  +A+  Y +ML +GS   D  T  F LKACA + AL E  QIH+ +L+ 
Sbjct: 98  IRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKL 157

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           GF +D  +  +L+  YA    +  AK VFD M  R + SWN +I    +      A++LF
Sbjct: 158 GFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLF 217

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE----ERLDMNVVVCNAVID 253
              +M+  F+P+  T+     AC  +G+   G   H ++ +    +R++ +V++  +++D
Sbjct: 218 G--EMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVN-DVLLNTSLVD 274

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDD 312
           MY KCG L+ A ++F  +  ++ + +WN+M++ F+ HG+   ALE F  M R   + P+ 
Sbjct: 275 MYCKCGSLELALQLFHRMP-KRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNA 333

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
           ++++  L ACNH GLV +G R F+ M     +KP ++HYG +VDLL RAG + EA D+V 
Sbjct: 334 ITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVS 393

Query: 372 SVSMGTDMVLWQTLLGAC-QLYGDVEMAEIASRKLVEMGSNNC-GDFVLLSNLYAAYERW 429
           ++ M  D+V+W++LL AC +    VE++E  +R+++E     C G +VLLS +YA+  RW
Sbjct: 394 NMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRW 453

Query: 430 DDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEY 489
           +DVG VRK M ++ V K PG S IE+ GV H+FF  D SH +  EIY  LD I  +++  
Sbjct: 454 NDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERV 513

Query: 490 GYAAGTS-CVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDV 548
           GY+  +S   + D   + K+ +L  HSE+LA+AFGL+ T     I++FKNLR+C +CH V
Sbjct: 514 GYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQV 573

Query: 549 IKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KLIS+V+NREIIVRDR+RFH FKDGACSC DYW
Sbjct: 574 TKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 607


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/530 (40%), Positives = 325/530 (61%), Gaps = 24/530 (4%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHV 134
           +NA++ G A S     A++ + +M   +   S+A T S  + A  R   +     IH +V
Sbjct: 286 WNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYV 345

Query: 135 LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194
           ++ G   +  L   L+D+Y+++G+I ++K++FD M  RDI SWN +I        +S+A+
Sbjct: 346 IKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDAL 405

Query: 195 DLFKRMKM---------------EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
            L   M+                +  FKPN +T++  L  C  L A  +G +IH Y    
Sbjct: 406 LLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRN 465

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            L   V V +A++DMYAKCG L+ A  VFD +  R +++TWN ++MA+ +HG G  +LEL
Sbjct: 466 LLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHGKGKESLEL 524

Query: 300 FEQMGRAG-----VKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSV 353
           FE M   G     VKP +V+++A   +C+H+G+VD+G+ LF+ M N  G++P   HY  +
Sbjct: 525 FEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACI 584

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           VDL+GRAG+++EA  +V ++  G D V  W +LLGAC++Y ++E+ EIA+  L+++  + 
Sbjct: 585 VDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDV 644

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW 472
              +VLLSN+Y++   WD    +R+ MK   VKK PG S+IE G  +HKF   D SH + 
Sbjct: 645 ASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQS 704

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
            ++++ L+ +  ++K+ GY   T+CVLHDI EEEKE  LC HSEKLA+AFG+++T   T+
Sbjct: 705 EKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTPPGTT 764

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           I+V KNLR+C DCH   K ISK+ +REII+RD  RFH FKDG CSC DYW
Sbjct: 765 IRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 162/345 (46%), Gaps = 17/345 (4%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF--LADALLGTTLLDVYAKV 156
           M+      D       LKA A +  L+   QIH+HV + G+   +   +  TL+++Y K 
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
           G +  A KVFD +  RD  SWN++I+ L +      A+  F+ M MEG F+P+  T++  
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEG-FEPSSFTLVSM 119

Query: 217 LAACGHL----GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
             AC +L    G W  G +IH      +        NA++ MYAK G LD A  +    +
Sbjct: 120 ALACSNLRKRDGLWL-GKQIHGCCF-RKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFE 177

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
            R  LVTWN+M+ +F+ +     AL     M   GVKPD V++ + L AC+H  L+  G 
Sbjct: 178 DR-DLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGK 236

Query: 333 RLFN-SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
            +   ++    V  N     ++VD+    G+++    +  SV +   + LW  ++     
Sbjct: 237 EIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSV-LDRKIGLWNAMIAG--- 292

Query: 392 YGDVEMAEIASRKLVEM--GSNNCGDFVLLSNLYAAYERWDDVGR 434
           Y   E  E A    +EM   +    +   +S++  AY R + + R
Sbjct: 293 YAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISR 337



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 158/335 (47%), Gaps = 19/335 (5%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N+++   + + +   A+++ R M+    + D +T +  L AC+ +  L    +IH++ L
Sbjct: 184 WNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYAL 243

Query: 136 R-HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194
           R    + ++ +G+ L+D+Y   G++ S + VFD +  R I  WNA+IAG AQ     +A+
Sbjct: 244 RTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKAL 303

Query: 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
            LF  M+       N  T+   + A          + IH Y+ +  L+ N  + NA+IDM
Sbjct: 304 MLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDM 363

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR--------- 305
           Y++ G +  +  +FD+++ R  +V+WNT++ ++ + G    AL L  +M R         
Sbjct: 364 YSRMGDIKTSKRIFDSMEDR-DIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDG 422

Query: 306 -------AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
                     KP+ ++ +  L  C     +  G  +        +   +    ++VD+  
Sbjct: 423 DYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYA 482

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + G L  A  +   + +  +++ W  ++ A  ++G
Sbjct: 483 KCGCLNLARRVFDQMPI-RNVITWNVIIMAYGMHG 516


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/530 (41%), Positives = 335/530 (63%), Gaps = 12/530 (2%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSK-----PTNAVLWYRQMLR-GSHRSDALTCSF 113
           YA ALF QI  P+   +N+++R ++ S        T+  L YR+ML  GS   ++ T +F
Sbjct: 76  YARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAF 135

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM-GVR 172
            LKAC    AL E  Q+H+    HG      + T LL++YA+  E+  A+ VFD M   +
Sbjct: 136 VLKACT---ALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDK 192

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           ++ +W+++I G ++  + +EA+ LF+ M+  GV  P+EVT++  ++AC   GA   G  +
Sbjct: 193 NLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGV-NPDEVTMVSVISACAKAGALDLGKWV 251

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H +I  + + +++ +  A+IDMYAKCGL+++A  VFD++  R +   W+ M++  A+HG 
Sbjct: 252 HAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDT-KAWSAMIVGLAMHGL 310

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
              AL LF +M +  V+P++V+++  L AC H+GLVDDG R + +M   G++ +M++YG 
Sbjct: 311 AEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQELGIEASMENYGC 370

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           +VDLL R+G L EA   V  + +  + V+W+ LL A +    +++ E+ASR+L E+   N
Sbjct: 371 MVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFELEPQN 430

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW 472
             ++VLLSNLYA   +WD V  +RK MK+ +V  V G S IE+ G +HKF  SD SH + 
Sbjct: 431 PENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVVSDGSHPEI 490

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
           ++I   L EI  ++   G+   T+ VLHD+ EEEKE ALC HSE+LA+A+GL+ T     
Sbjct: 491 KKIRLVLREIADRVLCAGHKPWTAAVLHDVVEEEKEVALCEHSERLAIAYGLLKTKAPHV 550

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           I+V KNLR C DCH+V K+ISK Y REIIVRDRVRFHRF  G+CSC D+W
Sbjct: 551 IRVVKNLRFCPDCHEVTKIISKSYGREIIVRDRVRFHRFIGGSCSCNDFW 600


>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
 gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
          Length = 601

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/515 (43%), Positives = 317/515 (61%), Gaps = 11/515 (2%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           PST   NA+LR L    +  +A+ + R+      R +A + S  L  C    AL    Q+
Sbjct: 95  PSTFRLNAILRSL----RGPDALRFLRRARALGRRGNAFSLSIVLGHCR---ALAHARQL 147

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H++V+  G   DALL T+L+  YA  G+  SA+KVFDEM VRD  +WN LI    +    
Sbjct: 148 HANVVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTRNRRT 207

Query: 191 SEAVDLFKRMKM-EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
            +A+ LF  M+  E   +P++VT +  L AC  LGA   G+K+ EY  +      + V N
Sbjct: 208 KDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGGELKVRN 267

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           ++I MY KCG +DKA++VF     +KS+VTW+ M+   A +G G  A+  FE+MGR+GV 
Sbjct: 268 SLITMYTKCGCVDKAYQVFCETP-KKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVA 326

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           PD+ ++   L AC+H+GLVD+G + F+ M     +KPN+ HYG +VDL+GRAG L +A +
Sbjct: 327 PDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYE 386

Query: 369 -IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
            +VK + +  D  +W+TLLGAC+++G +++ E     L+E+ +   GD+VLL N YAA E
Sbjct: 387 LVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVE 446

Query: 428 RWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487
            W  V  VRK MK + ++  PG + +E+ G IH+F  +D SH +  EIYEKLDEI   ++
Sbjct: 447 DWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHEFIAADASHPRKAEIYEKLDEINKHLR 506

Query: 488 EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHD 547
             GY    S  LHD+  E KE AL YHSEKLA+AF L+ T +   I++ KNLR+C DCH+
Sbjct: 507 IAGYVPNVSSELHDLDSEGKECALAYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHN 566

Query: 548 VIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             K+ S VY+R +IVRDR RFH FK+  CSC DYW
Sbjct: 567 FTKVFSGVYHRLVIVRDRTRFHHFKEFQCSCNDYW 601


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/589 (39%), Positives = 355/589 (60%), Gaps = 18/589 (3%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAH--LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           L A L  C+S  A++ +H   ++A   L     F ++L  +     E  A +P + LAYA
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTL---CTEQGAEAPAH-LAYA 86

Query: 62  HALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLW----YRQMLRGSHRSDALTCSFA 114
             +F +I  P   D   +N +LRG A               + +M+      D  T    
Sbjct: 87  RQVFDRI--PHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSL 144

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           LKACA   A  E  Q H   ++ G      +  TL+++YA+ G++ +A+ +FD M    +
Sbjct: 145 LKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECV 204

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            S+NA+I    + +L  EA+ LF+ M+ +G+ KP  VT++  L+AC  LGA + G  IH+
Sbjct: 205 VSYNAMITASVRSSLPGEALVLFREMQAKGL-KPTSVTLISVLSACALLGALELGRWIHD 263

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           YIR+ RLD  V V  A+IDMYAKCG L+ A  VF +++ R     W+ M++A+A HG G 
Sbjct: 264 YIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQ-AWSVMMVAYANHGYGR 322

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            A+ +FE+M + G+KPDDV++L  L AC+H+G+V +G++ F+SM   G+   +KHYG V 
Sbjct: 323 EAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVT 382

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLL R+G+L+ A   +  + +    +LW+TLL AC  +GDV+M +    +++E+  ++ G
Sbjct: 383 DLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGG 442

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
           D+V+ SNL A   RW+++  VRK M  + V KVPG S IE+  ++H+FF  D SH   +E
Sbjct: 443 DYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQE 502

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
               +DE++ ++K  GY   TS V H ++GEEEK  +L YHSEKLA++FGL++T+  T++
Sbjct: 503 ARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTL 562

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++ KNLR+C DCH + KL+S V+NR II+RD  RFH F+DG CSC DYW
Sbjct: 563 RIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/531 (39%), Positives = 330/531 (62%), Gaps = 3/531 (0%)

Query: 53  SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           SP   +AYAH +F   + P+   +N ++RG + S  P +A+  Y+ M       ++ T  
Sbjct: 12  SPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFG 71

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           F L AC ++L L E  ++HS +++ G   +  L   L+ +YA  G +  A  +FDEM   
Sbjct: 72  FVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEP 131

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D ASW+ +++G +Q   A E + L + M+ E V   +  T+   +  CG LG    G  +
Sbjct: 132 DSASWSTMVSGYSQNGQAVETLKLLREMQAENV-SSDAFTLASVVGVCGDLGVLDLGKWV 190

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H YI +E + ++VV+  A++ MY+KCG LD A +VF  +   + + TW+ M+  +A+HG 
Sbjct: 191 HSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMA-ERDVTTWSIMIAGYAIHGH 249

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYG 351
             +AL+LF+ M R+ + P+ V++ + L A +H+GLV+ G ++F +M     + P +KHYG
Sbjct: 250 DEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYG 309

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +VDL  RAG +  A   ++++ +  ++VLW+TLLGAC+ +G   + E  SRK++++  +
Sbjct: 310 CMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPS 369

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           +  ++V +SN+YA+  RW  V +VR  MK +  KK  G+S IE+  ++HKF   ++SH K
Sbjct: 370 SPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPK 429

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
             +IY  L ++  K+K+ G+ A T  VLHDI EEEKE AL  HSE+LA+A+GL+ T   +
Sbjct: 430 REKIYGMLHQMARKLKQVGHVASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGS 489

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            I++ KNLR CRDCH+VIKLIS+VYNREII+RDRV FH F++  CSC DYW
Sbjct: 490 PIRIVKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/589 (39%), Positives = 355/589 (60%), Gaps = 18/589 (3%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAH--LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           L A L  C+S  A++ +H   ++A   L     F ++L  +     E  A +P + LAYA
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTL---CTEQGAEAPAH-LAYA 86

Query: 62  HALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLW----YRQMLRGSHRSDALTCSFA 114
             +F +I  P   D   +N +LRG A               + +M+      D  T    
Sbjct: 87  RQVFDRI--PHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSL 144

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           LKACA   A  E  Q H   ++ G      +  TL+++YA+ G++ +A+ +FD M    +
Sbjct: 145 LKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECV 204

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            S+NA+I    + +L  EA+ LF+ M+ +G+ KP  VT++  L+AC  LGA + G  IH+
Sbjct: 205 VSYNAMITASVRSSLPGEALVLFREMQAKGL-KPTSVTLISVLSACALLGALELGRWIHD 263

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           YIR+ RLD  V V  A+IDMYAKCG L+ A  VF +++ R     W+ M++A+A HG G 
Sbjct: 264 YIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQ-AWSVMMVAYANHGYGR 322

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            A+ +FE+M + G+KPDDV++L  L AC+H+G+V +G++ F+SM   G+   +KHYG V 
Sbjct: 323 EAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVT 382

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLL R+G+L+ A   +  + +    +LW+TLL AC  +GDV+M +    +++E+  ++ G
Sbjct: 383 DLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGG 442

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
           D+V+ SNL A   RW+++  VRK M  + V KVPG S IE+  ++H+FF  D SH   +E
Sbjct: 443 DYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQE 502

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
               +DE++ ++K  GY   TS V H ++GEEEK  +L YHSEKLA++FGL++T+  T++
Sbjct: 503 ARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTL 562

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++ KNLR+C DCH + KL+S V+NR II+RD  RFH F+DG CSC DYW
Sbjct: 563 RIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/525 (40%), Positives = 319/525 (60%), Gaps = 13/525 (2%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF QI+ P    +NA++ G   + +  +AV  +R++L    R ++ T    L     V  
Sbjct: 271 LFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSST----LVGLIPVYL 326

Query: 124 LFETLQ----IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            F  LQ    I +  L+ G +    + T L  VY ++ E+  A+++FDE   + +ASWNA
Sbjct: 327 PFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNA 386

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I+G  Q  L   A+ LF+ M  +    PN VTV   L+AC  LGA   G  +H  I+ E
Sbjct: 387 MISGYTQNGLTDRAISLFQEMMPQ--LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE 444

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
           RL+ NV V  A++DMYAKCG + +A ++FD +   K++VTWN M+  + +HG G  AL+L
Sbjct: 445 RLESNVYVSTALVDMYAKCGSIVEARQLFD-LMVDKNVVTWNAMITGYGLHGHGKEALKL 503

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLG 358
           F +M ++G+ P  V++L+ L AC+H+GLV +G  +F+SMAN  G +P  +HY  +VD+LG
Sbjct: 504 FYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILG 563

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG+L  A + ++ + +     +W  LLGAC ++ + EMA +AS++L ++   N G +VL
Sbjct: 564 RAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVL 623

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+Y+    +     VR+ +K R + K PG + IE+    + F + D+SH +   I+E 
Sbjct: 624 LSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEM 683

Query: 479 LDEIMFKIKEYGYAAGT-SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
           L+++  K++E GY A T +  LHD+ +EEKE  +  HSEKLA+AFGLIST   T I++ K
Sbjct: 684 LEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIK 743

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+C DCH   K ISK+  R I+VRD  RFH FK+G CSC DYW
Sbjct: 744 NLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 145/295 (49%), Gaps = 7/295 (2%)

Query: 14  NGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPST 73
           N A +   + Q+QA L   G     L  +     +F+    L  +A+   LF +++ P  
Sbjct: 22  NNATTLSQLLQIQAQLILHG-IHYDLSSITKLTHKFF---DLGAVAHVRQLFNKVSKPDL 77

Query: 74  NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHS 132
             FN ++RG + +  P +++  Y  + + ++ R D  T +FA+ A +R+      + +H+
Sbjct: 78  FLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHA 137

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
           H +  G  ++  +G+ ++D+Y K      A+KVFD M  RD   WN +I+G ++ +   +
Sbjct: 138 HSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFED 197

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           ++ +F  M   G+   +  T+   L A   L  ++ G  I     ++ L  +V V   +I
Sbjct: 198 SIRVFVDMLDVGL-SFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLI 256

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
            +Y+KCG   K   +FD I  +  L+++N M+  +  + +   A+ LF ++  +G
Sbjct: 257 SLYSKCGKSCKGRILFDQID-QPDLISYNAMISGYTFNHETESAVTLFRELLASG 310



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 179/400 (44%), Gaps = 9/400 (2%)

Query: 25  LQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLA 84
           L AH    G   S LF V S I++ Y      ELA    +F  +    T  +N ++ G +
Sbjct: 135 LHAHSIVDG-VASNLF-VGSAIVDLYFKFTRAELA--RKVFDVMPERDTVLWNTMISGFS 190

Query: 85  HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADAL 144
            +S   +++  +  ML      D+ T +  L A A +      + I     + G  +D  
Sbjct: 191 RNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVY 250

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           + T L+ +Y+K G+    + +FD++   D+ S+NA+I+G    +    AV LF+ +   G
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
             + N  T++G +         +    I     +  + +   V  A+  +Y +   +  A
Sbjct: 311 Q-RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
            ++FD     KSL +WN M+  +  +G   RA+ LF++M    + P+ V+  + L AC  
Sbjct: 370 RQLFDE-SPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQ 427

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
            G +  G  +   + +  ++ N+    ++VD+  + G + EA  +   + +  ++V W  
Sbjct: 428 LGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLF-DLMVDKNVVTWNA 486

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           ++    L+G  + A     ++++ G    G    LS LYA
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTG-VTFLSILYA 525



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 1/209 (0%)

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           F L        L + LQI + ++ HG   D    T L   +  +G +   +++F+++   
Sbjct: 16  FFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKP 75

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D+  +N LI G +   L   ++ L+  ++     +P+  T   A++A   L   + G  +
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H +   + +  N+ V +A++D+Y K    + A +VFD +  R + V WNTM+  F+ +  
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDT-VLWNTMISGFSRNSY 194

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCA 321
              ++ +F  M   G+  D  +    L A
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTA 223


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/604 (38%), Positives = 356/604 (58%), Gaps = 32/604 (5%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           N NA+L +C +  A      +++ AH+  T    S    +R+++I  Y  +  + L  AH
Sbjct: 245 NYNAILNECVNKRAFREG--QRVHAHMIKTRYLPSVF--LRTRLIVLY--TKCDSLGDAH 298

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAV-LWYRQM---LRGSHRSDALTCS------ 112
            +F ++   +   + A++   +     + A+ L++  +   L G +  D L  S      
Sbjct: 299 NVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPW 358

Query: 113 ---------FA--LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                    FA  L +C   L      QIHS +++  +     +G++LLD+YAK G+I  
Sbjct: 359 VCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHE 418

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+ VF+ +  RD+ S  A+I+G AQ  L  EA++LF+R++ EG+ K N VT  G L A  
Sbjct: 419 ARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGM-KSNYVTYTGVLTALS 477

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L A   G ++H ++    +   VV+ N++IDMY+KCG L  +  +FD +   +++++WN
Sbjct: 478 GLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMY-ERTVISWN 536

Query: 282 TMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
            M++ ++ HG+G   L+LF  M     VKPD V+ LA L  C+H GL D G+ +FN M++
Sbjct: 537 AMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSS 596

Query: 341 --CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
               V+P M+HYG VVDLLGR+GR++EA + +K +       +W +LLGAC+++ +V++ 
Sbjct: 597 GKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIG 656

Query: 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGV 458
           E A ++L+E+   N G++V+LSNLYA+  RW+DV  +R  M  + V K PG S IE+  V
Sbjct: 657 EFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQV 716

Query: 459 IHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKL 518
           +H F  SD+SH +  EI  K+ E+    KE GY    SCVLHD+ EE+KE  L  HSEKL
Sbjct: 717 LHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKL 776

Query: 519 AVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSC 578
           A++FGLI++  +  I+V KNLRIC DCH+  K ISKVY RE+ +RD+ RFHR   G CSC
Sbjct: 777 ALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSC 836

Query: 579 KDYW 582
           +DYW
Sbjct: 837 EDYW 840


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/525 (40%), Positives = 319/525 (60%), Gaps = 13/525 (2%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF QI+ P    +NA++ G   + +  +AV  +R++L    R ++ T    L     V  
Sbjct: 271 LFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSST----LVGLIPVYL 326

Query: 124 LFETLQ----IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            F  LQ    I +  L+ G +    + T L  VY ++ E+  A+++FDE   + +ASWNA
Sbjct: 327 PFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNA 386

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I+G  Q  L   A+ LF+ M  +    PN VTV   L+AC  LGA   G  +H  I+ E
Sbjct: 387 MISGYTQNGLTDRAISLFQEMMPQ--LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE 444

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
           RL+ NV V  A++DMYAKCG + +A ++FD +   K++VTWN M+  + +HG G  AL+L
Sbjct: 445 RLESNVYVSTALVDMYAKCGSIVEARQLFD-LMVDKNVVTWNAMITGYGLHGHGKEALKL 503

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLG 358
           F +M ++G+ P  V++L+ L AC+H+GLV +G  +F+SMAN  G +P  +HY  +VD+LG
Sbjct: 504 FYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILG 563

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG+L  A + ++ + +     +W  LLGAC ++ + EMA +AS++L ++   N G +VL
Sbjct: 564 RAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVL 623

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+Y+    +     VR+ +K R + K PG + IE+    + F + D+SH +   I+E 
Sbjct: 624 LSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEM 683

Query: 479 LDEIMFKIKEYGYAAGT-SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
           L+++  K++E GY A T +  LHD+ +EEKE  +  HSEKLA+AFGLIST   T I++ K
Sbjct: 684 LEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIK 743

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+C DCH   K ISK+  R I+VRD  RFH FK+G CSC DYW
Sbjct: 744 NLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 145/295 (49%), Gaps = 7/295 (2%)

Query: 14  NGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPST 73
           N A +   + Q+QA L   G     L  +     +F+    L  +A+   LF +++ P  
Sbjct: 22  NNATTLSQLLQIQAQLILHG-IHYDLSSITKLTHKFF---DLGAVAHVRQLFNKVSKPDL 77

Query: 74  NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHS 132
             FN ++RG + +  P +++  Y  + + ++ R D  T +FA+ A +R+      + +H+
Sbjct: 78  FLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHA 137

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
           H +  G  ++  +G+ ++D+Y K      A+KVFD M  RD   WN +I+G ++ +   +
Sbjct: 138 HSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFED 197

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           ++ +F  M   G+   +  T+   L A   L  ++ G  I     ++ L  +V V   +I
Sbjct: 198 SIRVFVDMLDVGL-SFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLI 256

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
            +Y+KCG   K   +FD I  +  L+++N M+  +  + +   A+ LF ++  +G
Sbjct: 257 SLYSKCGKSCKGRILFDQID-QPDLISYNAMISGYTFNHETESAVTLFRELLASG 310



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 179/400 (44%), Gaps = 9/400 (2%)

Query: 25  LQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLA 84
           L AH    G   S LF V S I++ Y      ELA    +F  +    T  +N ++ G +
Sbjct: 135 LHAHSIVDG-VASNLF-VGSAIVDLYFKFTRAELA--RKVFDVMPERDTVLWNTMISGFS 190

Query: 85  HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADAL 144
            +S   +++  +  ML      D+ T +  L A A +      + I     + G  +D  
Sbjct: 191 RNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVY 250

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           + T L+ +Y+K G+    + +FD++   D+ S+NA+I+G    +    AV LF+ +   G
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
             + N  T++G +         +    I     +  + +   V  A+  +Y +   +  A
Sbjct: 311 Q-RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
            ++FD     KSL +WN M+  +  +G   RA+ LF++M    + P+ V+  + L AC  
Sbjct: 370 RQLFDE-SPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQ 427

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
            G +  G  +   + +  ++ N+    ++VD+  + G + EA  +   + +  ++V W  
Sbjct: 428 LGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLF-DLMVDKNVVTWNA 486

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           ++    L+G  + A     ++++ G    G    LS LYA
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTG-VTFLSILYA 525



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 98/209 (46%), Gaps = 1/209 (0%)

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           F L        L + LQI + ++ HG   D    T L   +  +G +   +++F+++   
Sbjct: 16  FFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKP 75

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D+  +N LI G +   L   ++ L+  ++ +   +P+  T   A++A   L   + G  +
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H +   + +  N+ V +A++D+Y K    + A +VFD +  R + V WNTM+  F+ +  
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDT-VLWNTMISGFSRNSY 194

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCA 321
              ++ +F  M   G+  D  +    L A
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTA 223


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/533 (40%), Positives = 328/533 (61%), Gaps = 27/533 (5%)

Query: 76   FNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLALFETLQIHSHV 134
            +NA+L G A +     A+  + +M+  S    +A T +  L AC R     +   IH ++
Sbjct: 604  WNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYI 663

Query: 135  LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194
            ++ GF  D  +   L+D+Y+++G +  +K +F  M  RDI SWN +I G        +A+
Sbjct: 664  VKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDAL 723

Query: 195  DLFKRMKME----------------GV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            +L   M+                  GV FKPN VT++  L  C  L A  +G +IH Y  
Sbjct: 724  NLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAV 783

Query: 238  EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
            +++L M+V V +A++DMYAKCG L+ A  VFD +  R +++TWN ++MA+ +HG G  AL
Sbjct: 784  KQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIR-NVITWNVLIMAYGMHGKGEEAL 842

Query: 298  ELFEQMGRAG------VKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHY 350
            ELF  M   G      ++P++V+Y+A   AC+H+G+VD+G+ LF++M A+ GV+P   HY
Sbjct: 843  ELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHY 902

Query: 351  GSVVDLLGRAGRLQEACDIVKSVSMGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMG 409
              +VDLLGR+GR++EA +++ ++    + V  W +LLGAC+++  VE  EIA++ L  + 
Sbjct: 903  ACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLE 962

Query: 410  SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
             N    +VL+SN+Y++   WD    VRK MK   V+K PG S+IE G  +HKF + D SH
Sbjct: 963  PNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASH 1022

Query: 470  VKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSE 529
             + +E++E L+ +  ++++ GY    SCVLH++ +EEKE  LC HSE+LA+AFGL++T  
Sbjct: 1023 PQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNTPP 1082

Query: 530  ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             T+I+V KNLR+C DCH   K+ISK+ +REII+RD  RFH F +G CSC DYW
Sbjct: 1083 GTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 186/409 (45%), Gaps = 26/409 (6%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ A+    G  ++      + ++  YA   L  +  A ALF   +      +N V+  
Sbjct: 454 KQVHAYTLRNGDLRTY---TNNALVTMYAR--LGRVNDAKALFGVFDGKDLVSWNTVISS 508

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG-FLA 141
           L+ + +   A+++   M+    R D +T +  L AC+++  L    +IH + LR+G  + 
Sbjct: 509 LSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIE 568

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           ++ +GT L+D+Y    +    + VFD +  R +A WNAL+AG A+     +A+ LF  M 
Sbjct: 569 NSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMI 628

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            E  F PN  T    L AC     + + + IH YI +     +  V NA++DMY++ G +
Sbjct: 629 SESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRV 688

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR---------------- 305
           + +  +F  +  ++ +V+WNTM+    V G    AL L  +M R                
Sbjct: 689 EISKTIFGRMN-KRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDD 747

Query: 306 AGV--KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
            GV  KP+ V+ +  L  C     +  G  +        +  ++    ++VD+  + G L
Sbjct: 748 GGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCL 807

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
             A  +   + +  +++ W  L+ A  ++G  E A    R +   G +N
Sbjct: 808 NLASRVFDQMPI-RNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSN 855



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 130/259 (50%), Gaps = 12/259 (4%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIH 131
           S + +  +LR   HSS   +A+  Y  ML      D       LKA A V  L    QIH
Sbjct: 294 SPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIH 353

Query: 132 SHVLR--HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +HV +  H   +   +  +L+++Y K G++ +A++VFD++  RD  SWN++IA L +   
Sbjct: 354 AHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEE 413

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL-GAWKEGDKIHEYIREERLDMNVVVC 248
              ++ LF+ M  E V  P   T++    AC H+ G  + G ++H Y      D+     
Sbjct: 414 WELSLHLFRLMLSENV-DPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTN 471

Query: 249 NAVIDMYAKCGLLDKA---FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           NA++ MYA+ G ++ A   F VFD     K LV+WNT++ + + +     AL     M  
Sbjct: 472 NALVTMYARLGRVNDAKALFGVFDG----KDLVSWNTVISSLSQNDRFEEALMYVYLMIV 527

Query: 306 AGVKPDDVSYLAALCACNH 324
            GV+PD V+  + L AC+ 
Sbjct: 528 DGVRPDGVTLASVLPACSQ 546


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/578 (38%), Positives = 333/578 (57%), Gaps = 38/578 (6%)

Query: 41  PVRSKIIEFYALSPLNELAYAHALF-RQINAPSTNDFNAVLRGLAHSSKP---TNAVLWY 96
           P    II F AL P  ++ YA  L  R    P+   FN  +RG + + +P    ++VL +
Sbjct: 21  PSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVLLF 80

Query: 97  RQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV 156
            +M   S   +  T +F  + C+  +A     Q H  V+++ F  D  +  +++  Y+  
Sbjct: 81  VRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVC 140

Query: 157 GEIVSAKKVFDE-------------------------------MGVRDIASWNALIAGLA 185
           G +  A+ VFDE                               M  R+  SWN +I+G A
Sbjct: 141 GRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYA 200

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q     EA+ LF+ M+M    +PN   ++  L+AC  LGA   G  +H YI ++ + ++ 
Sbjct: 201 QNGQPKEALALFREMQMLDQ-EPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDS 259

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           ++  A+IDMYAKCG +D A + F   + ++ +  +   +   A++G    AL+LFEQM  
Sbjct: 260 ILSAALIDMYAKCGSIDLAMQAFSTSR-KRDVSAYTAAISGLAMNGCSEEALQLFEQMKG 318

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQ 364
            G+ PD VSY+A LCAC+HAG V+ G   F SM++  G++P + HY  +VDLLGRAG L+
Sbjct: 319 EGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLE 378

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           EA   V S+ +  D V+W  LLGAC++YG+ EM +     LVE   N+ G ++LLSN+YA
Sbjct: 379 EAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYA 438

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
              + +D  +VRK M+ R V +VPG S IEV G +H+FF+ D+SH K  EIY   +EI+ 
Sbjct: 439 ESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEEIVK 498

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
           +IK++GY   T  V+ D+ EEEKE  + +HSEKLAVAFG + T   +++++ KN+RIC D
Sbjct: 499 EIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVKNIRICSD 558

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH  IKL+SKV+ R+I +RDR  FH F++G CSCKDYW
Sbjct: 559 CHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/583 (38%), Positives = 352/583 (60%), Gaps = 18/583 (3%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFY-ALSPLNELAYAHAL 64
           +LLQ+      V  IH     A L   G  Q         + E   + S  + + YA  +
Sbjct: 44  SLLQRSRHINQVLPIH-----AQLIRNGHSQDPFM-----VFELLRSCSKCHAIDYASRI 93

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F+  + P+   + A++ G   S     A+  Y +ML  S   D    +  LKAC   LAL
Sbjct: 94  FQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLAL 153

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG----VRDIASWNAL 180
            E  ++HS  L+ GF ++ L+   ++++Y K GE+  A++VF+EM      +D   W A+
Sbjct: 154 REGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAM 213

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G  +    + A++ F+ M+ E V +PNE T++  L+AC  LGA + G  +H Y+R+  
Sbjct: 214 IDGFVRNEETNRALEAFRGMQGENV-RPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFE 272

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           +++N+ V NA+I+MY++CG +D+A  VFD +K R  ++T+NTM+   +++G   +A+ELF
Sbjct: 273 IELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR-DVITYNTMISGLSMNGKSRQAIELF 331

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
             M    ++P +V+++  L AC+H GLVD G  +F+SMA +  V+P ++HYG +VDLLGR
Sbjct: 332 RVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGR 391

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
            GRL+EA D+++++ M  D ++  TLL AC+++ ++E+ E  +++L + G  + G +VLL
Sbjct: 392 VGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLL 451

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           S++YA+  +W +  +VR  MK   ++K PG S IEV   IH+F   D  H +   IYEKL
Sbjct: 452 SHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKL 511

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +E+   ++  GY      VL DI + EKE AL  HSE+LA+ +GLIST   T I+V KNL
Sbjct: 512 EELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNL 571

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH  IKLI+K+  R+I+VRDR RFH F++GACSC DYW
Sbjct: 572 RVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/567 (40%), Positives = 335/567 (59%), Gaps = 17/567 (2%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA-----HALFRQINAPSTNDFNA 78
           QL AHL  TG     L PV +        +       A     H L    + PST   N+
Sbjct: 38  QLHAHLLRTGLL--ALSPVTTTAAFLSLAAASLPSHRALAVLDHHLTAASSLPSTFQCNS 95

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           +LR L   S P++A+ + R+M     R +A T +  LK      AL    Q+H++V+  G
Sbjct: 96  ILRVL---SDPSDALRFLRRMRALGRRGNAFTLAILLKP---RCALAHARQLHANVVAEG 149

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
            L DALL T+L+  YA  G+   A+K+F EM  RD  +WN LI+  A+     +A+ LF+
Sbjct: 150 HLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFE 209

Query: 199 RMK-MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
            M+  +   +P++VT +  L AC  LGA   G+++  Y  E      + V N++I MY++
Sbjct: 210 EMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYSR 269

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           CG +DKA+ VF     +KS+VTW+ M+   A +G G  A+  FE+M R+ V PD+ ++  
Sbjct: 270 CGCVDKAYRVFCGTP-QKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTG 328

Query: 318 ALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS-VSM 375
            L AC+H+GLVD+G R F+ M    G+KPN++HYG +VDL+GRAG L EA ++V + + +
Sbjct: 329 VLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKV 388

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
             D  +W+TLLGAC+++G V++ E     L+E+ +   GD+VLL N YAA   W  V  V
Sbjct: 389 APDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEV 448

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           RK M+ + ++  PG + +E  G +++F   D +H +  EIYEKL+EI  +++  GY    
Sbjct: 449 RKLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLNEINKQLRIAGYVPNV 508

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
           S  LHD+  E KE+AL YHSEKLA+AF L+ T +   I++ KNLR+C DCH+  K+ S +
Sbjct: 509 SSELHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNLRVCVDCHNFTKVFSGI 568

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
           YNR +IVRDR RFH F+ G CSC DYW
Sbjct: 569 YNRLVIVRDRTRFHHFQGGKCSCNDYW 595



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 22/293 (7%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS--AKKVFDE--- 168
           AL A A  +     LQ+H+H+LR G LA + + TT   +      + S  A  V D    
Sbjct: 23  ALLASASPIPPRRFLQLHAHLLRTGLLALSPVTTTAAFLSLAAASLPSHRALAVLDHHLT 82

Query: 169 --MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA-CGHLGA 225
               +      N+++  L+     S+A+   +RM+  G  + N  T+   L   C    A
Sbjct: 83  AASSLPSTFQCNSILRVLSD---PSDALRFLRRMRALGR-RGNAFTLAILLKPRC----A 134

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
                ++H  +  E    + ++  +++  YA  G  D A ++F  +  R + V WN ++ 
Sbjct: 135 LAHARQLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDA-VAWNVLIS 193

Query: 286 AFAVHGDGPRALELFEQM-GR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
             A +     AL+LFE+M GR +G +PDDV+ +  L AC   G +D G +++      G 
Sbjct: 194 CCARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGY 253

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG--ACQLYGD 394
              +K   S++ +  R G + +A  +       + +V W  ++   A   +GD
Sbjct: 254 GAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKS-VVTWSAMISGLAANGFGD 305


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/513 (41%), Positives = 327/513 (63%), Gaps = 9/513 (1%)

Query: 77  NAVLRGLAHSSKPT---NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET-LQIHS 132
           N ++R  A S  P+    A  ++  MLR +   +  T  F LKACA +       LQ H+
Sbjct: 97  NTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHA 156

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGE--IVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
             L+ GF  D  +  TL+ +Y+  G   +  A+ VFD M    + +W+A+I G  +G L+
Sbjct: 157 AALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLS 216

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
           S+AV LF+ M+  GV +P+EVTV+G LAA   LGA +    +  ++  E +  +V +CNA
Sbjct: 217 SDAVGLFREMQASGV-RPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTLCNA 275

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           +ID  AKCG +D A  VF  ++  +++V+W +++ A A+ G G  A+ +FE M  AGV+P
Sbjct: 276 LIDALAKCGDVDGAVAVFQGME-ERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRP 334

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           DDV ++  L AC+HAG+VD+G   F+SM    G+ P ++HYG +VD+ GRAG ++ A + 
Sbjct: 335 DDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEF 394

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW 429
           + ++ M  + ++W+TL+ AC+ +G +E+ E  +R L+     +  ++V+LSN+YA  +RW
Sbjct: 395 IHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVYALTQRW 454

Query: 430 DDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEY 489
            +   +R+ M  R +KKVPG S +E+ G +H+F   D+SH +W+EIY  ++E+  ++K  
Sbjct: 455 KEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELKHV 514

Query: 490 GYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVI 549
           G+ + TS VL D+ EE+KE AL +HSEKLA+AF L+ T   T ++V KNLR+C DCH  I
Sbjct: 515 GHISATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAI 574

Query: 550 KLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K IS VYNREIIVRDR RFHRFK+G+CSC D+W
Sbjct: 575 KCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 125/265 (47%), Gaps = 6/265 (2%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  Y+      L  A  +F +++  S   ++A++ G       ++AV  +R+M  
Sbjct: 169 VSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQA 228

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              R D +T    L A A + AL     +   V R G      L   L+D  AK G++  
Sbjct: 229 SGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDG 288

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A  VF  M  R + SW ++I  LA      EAV +F+ MK  GV +P++V  +G L AC 
Sbjct: 289 AVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGV-RPDDVVFIGVLTACS 347

Query: 222 HLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
           H G   EG    + ++ E  +D  +     ++DM+ + G++++A E    +  + + + W
Sbjct: 348 HAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIW 407

Query: 281 NTMVMAFAVHGDGPRALELFEQMGR 305
            T+V A   HG     LEL E + R
Sbjct: 408 RTLVAACRAHGR----LELGESITR 428


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/629 (37%), Positives = 353/629 (56%), Gaps = 75/629 (11%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFY--ALSPLNELAYAHALFRQINAPSTNDFNAV 79
           ++Q+   L     F S      S+++  +  + S LN + YA ++F++    ++  FNA+
Sbjct: 58  LRQIHGQLYRCNVFSS------SRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNAL 111

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           +RGLA +S+  +++ ++  ML+     D LT  F LK+ A +        +H  +L+ G 
Sbjct: 112 IRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGL 171

Query: 140 LADALLGTTLLDVYAKV-----------------------------------GEIVSAKK 164
             D+ +  +L+D+Y KV                                   G++V A +
Sbjct: 172 EFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATE 231

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF------------------ 206
           +FD M  +D  SWN+LI G  +      A +LF +M  + V                   
Sbjct: 232 LFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKA 291

Query: 207 ------------KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
                       +PN+ T++ AL+AC  +GA   G +IH Y+      +N+V+  A++DM
Sbjct: 292 LETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDM 351

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
           YAKCG ++ A +VF   K  K L+ W+ M+  +A+HG   +AL+ FE M   G KPD V 
Sbjct: 352 YAKCGNIEHAEKVFHETK-EKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVV 410

Query: 315 YLAALCACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
           +LA L AC+H+G V++G++ F++M     ++P+MKHY  VVD+LGRAGRL EA   ++++
Sbjct: 411 FLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAM 470

Query: 374 SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
            +  D V+W  L  AC+ + +VEMAE+AS+KL+++   + G +V LSN YA+  RWDD  
Sbjct: 471 PITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAE 530

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA 493
           RVR +M++    K PG+S+IEV   +H+F   D +H +  EIY KLDEI    +E GY  
Sbjct: 531 RVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTK 590

Query: 494 GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
              CVLH+I EEEKE AL YHSEKLA+AFG++ST   T++++ KNLR+C DCH  +K  S
Sbjct: 591 EIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYAS 650

Query: 554 KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K+  REII+RD  RFH F DG CSC DYW
Sbjct: 651 KMSKREIILRDMKRFHHFNDGVCSCGDYW 679


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/622 (37%), Positives = 357/622 (57%), Gaps = 65/622 (10%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE-LAYAH 62
           L +LL  C++    +    KQ+  HL  TG      F    K++   A+S  +  L Y+ 
Sbjct: 12  LLSLLSNCNTTLKTT----KQIHTHLYVTGLHTHPFF--FGKLLLNCAVSISDHVLNYSL 65

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACAR- 120
            LF     P T  +N ++R L+HSS P +++  + Q+LR  +   D+ + +F LK  A  
Sbjct: 66  RLFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIAND 125

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---------- 170
             +  + +Q+HSH  RHGF     +GTTL+ +YA+ G    A+KVFDEM           
Sbjct: 126 GCSKRQGIQLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAV 185

Query: 171 ----------------------------VRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
                                       +RD ASW+ +I G A+     +A   FK + +
Sbjct: 186 VTACFRCGMWRVLGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKEL-L 244

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
               +P+EV++ G L+AC   GA++ G  +H ++ +      V V NA+ID Y+KCG +D
Sbjct: 245 RDRNRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVD 304

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VF+               ++ A+HG    A+ +F +M  +GV+PD V++++ L AC
Sbjct: 305 MAKLVFN---------------ISLAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYAC 349

Query: 323 NHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +H+GLV+ G  LF+ M N  G++P ++HYG +VDL GRA RLQ+A + ++ + +  ++++
Sbjct: 350 SHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPILPNVII 409

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W+TLLGAC ++G++E+AE+   +L EM  NN GD VLLSN+YA   +W DV  +R+ M  
Sbjct: 410 WRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGIRRTMIE 469

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLH 500
           + +KK+PG+S IE+  V + F   +K +   +E ++KL EIM +++ E GYA     VLH
Sbjct: 470 QSMKKIPGWSMIEIDKVNYGFVAGEKPNEVTKEAHDKLREIMLRLREEEGYAPQVRSVLH 529

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           D+ EEEKE+++  HSEKLA AFG+    +   +++ KNLR+C DCH V+KLISKVY  EI
Sbjct: 530 DVEEEEKEDSMSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEI 589

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           IVRDR RFH FK G CSC+DYW
Sbjct: 590 IVRDRSRFHSFKGGFCSCRDYW 611


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/509 (42%), Positives = 313/509 (61%), Gaps = 34/509 (6%)

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            D  TCSF LKAC ++  +     IH    + GF ++  L   +L++Y   GE+  A  +
Sbjct: 8   PDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLL 67

Query: 166 FDEMGVRDIASWN-------------------------------ALIAGLAQGNLASEAV 194
           F++M  RD  +WN                               ++I+G  Q    +EA+
Sbjct: 68  FEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAI 127

Query: 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
           DLF +++ E V +PNEVTV+  LAAC  LG    G  +HEY  +     NV VCN +IDM
Sbjct: 128 DLFMKLEDEAV-RPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDM 186

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
           Y KCG L+ A  VF  ++  +++V+W+ M+   A+HG    AL LF +M + GVKP+ V+
Sbjct: 187 YVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVT 245

Query: 315 YLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
           ++  L AC+H GL+D+G R F SM A+ GV P ++HYG VVDL  RAG L+EA + + S+
Sbjct: 246 FIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSM 305

Query: 374 SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
            +  + V+W  LLG C+++ ++++AE A + L E+   N G +V++SN+YA  ERW+D  
Sbjct: 306 PIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAA 365

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA 493
           RVRK MK+R VKK  G+S I V GV+H+F   D++H +  +I +  D+++ K+K  GYA 
Sbjct: 366 RVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYAP 425

Query: 494 GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
            TS VL D+ E+EKE  L  HSEKLAV FGL++T E T I++ KNLR+C DCH  +K+IS
Sbjct: 426 KTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALKIIS 485

Query: 554 KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            + +REIIVRDR RFH F+DG CSC+D+W
Sbjct: 486 GIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 144/298 (48%), Gaps = 11/298 (3%)

Query: 52  LSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTC 111
           L+   ++  A+  F ++   +   + +++ G     KP  A+  + ++   + R + +T 
Sbjct: 86  LAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTV 145

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
              L ACA +  L     +H +  + GF  +  +  TL+D+Y K G + +A++VF EM  
Sbjct: 146 VSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEE 205

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           R + SW+A+IAGLA    A EA+ LF  M   GV KPN VT +G L AC H+G   EG +
Sbjct: 206 RTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGV-KPNGVTFIGLLHACSHMGLIDEGRR 264

Query: 232 IHEYIREERLDMNVVV----CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
              +      D  V+        V+D++++ GLL++A E   ++  + + V W  ++   
Sbjct: 265 ---FFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGC 321

Query: 288 AVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
            VH +   A E  + +    + P +D  Y+        A   +D  R+   M + GVK
Sbjct: 322 KVHKNIDLAEEAIKHLSE--LDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVK 377


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 329/523 (62%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++   +   ++A++    +  +   A+  +R ML      D +T +  L AC+ 
Sbjct: 185 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSD 244

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L     IH  V + G   D  +   L+D+Y K  EI  A+ +FD+M  RD+ +W  +
Sbjct: 245 LKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVM 304

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G A+   A+E++ LF +M+ EGV  P++V ++  + AC  LGA  +   I +YI+ ++
Sbjct: 305 IGGYAECGNANESLVLFDKMREEGVV-PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK 363

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
             ++V++  A+IDM+AKCG ++ A E+FD ++  K++++W+ M+ A+  HG G +AL+LF
Sbjct: 364 FQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLF 422

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGR 359
             M R+G+ P+ ++ ++ L AC+HAGLV++G+R F+ M  +  V+ ++KHY  VVDLLGR
Sbjct: 423 PMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGR 482

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGRL EA  +++S+++  D  LW   LGAC+ + DV +AE A+  L+E+   N G ++LL
Sbjct: 483 AGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILL 542

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YA   RW+DV + R  M  R +KK+PG+++IEV    H+F   D +H + +EIYE L
Sbjct: 543 SNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEML 602

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
             +  K++  GY   T+ VLHD+ EE K   L  HSEKLA+AFGLI+T E T I++ KNL
Sbjct: 603 KSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNL 662

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH   KL+S +  R IIVRD  RFH FK+GACSC DYW
Sbjct: 663 RVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 181/330 (54%), Gaps = 7/330 (2%)

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
           G A      N    +R+++R   R D  T  F ++AC  +  L     IH  V + G   
Sbjct: 4   GFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 63

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  +   L+D+Y K  EI  A+ +FD+M  RD+ +W  +I G A+   A+E++ LF++M+
Sbjct: 64  DHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMR 123

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            EGV  P++V ++  + AC  LGA  +   I +YI+ ++  ++V++  A+IDMYAKCG +
Sbjct: 124 EEGVV-PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCV 182

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           + A E+FD ++  K++++W+ M+ A+  HG G +AL+LF  M  +G+ PD ++  + L A
Sbjct: 183 ESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYA 241

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHY--GSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           C+    +  G  + + +   G+  ++ H+   ++VD+ G+   +++A  +   +    D+
Sbjct: 242 CSDLKNLQMGRLIHHIVYKFGL--DLDHFVCAALVDMYGKCREIEDARFLFDKMP-ERDL 298

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           V W  ++G     G+   + +   K+ E G
Sbjct: 299 VTWTVMIGGYAECGNANESLVLFDKMREEG 328



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 172/337 (51%), Gaps = 3/337 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E+  A  LF ++       +  ++ G A   K   +++ + +M       D +     + 
Sbjct: 80  EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF 139

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA++ A+ +   I  ++ R  F  D +LGT ++D+YAK G + SA+++FD M  +++ S
Sbjct: 140 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 199

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W+A+IA         +A+DLF+ M   G+  P+++T+   L AC  L   + G  IH  +
Sbjct: 200 WSAMIAAYGYHGQGRKALDLFRMMLSSGML-PDKITLASLLYACSDLKNLQMGRLIHHIV 258

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +  LD++  VC A++DMY KC  ++ A  +FD +   + LVTW  M+  +A  G+   +
Sbjct: 259 YKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGGYAECGNANES 317

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           L LF++M   GV PD V+ +  + AC   G +     + + +     + ++    +++D+
Sbjct: 318 LVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDM 377

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
             + G ++ A +I   +    +++ W  ++ A   +G
Sbjct: 378 HAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHG 413



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 140/293 (47%), Gaps = 12/293 (4%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
            L +LL  CS    + ++ + +L  H+          F V + +++ Y      E+  A 
Sbjct: 234 TLASLLYACSD---LKNLQMGRLIHHIVYKFGLDLDHF-VCAALVDMYG--KCREIEDAR 287

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            LF ++       +  ++ G A       +++ + +M       D +     + ACA++ 
Sbjct: 288 FLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLG 347

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           A+ +   I  ++ R  F  D +LGT ++D++AK G + SA+++FD M  +++ SW+A+IA
Sbjct: 348 AMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIA 407

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE--- 239
                    +A+DLF  M   G+  PN++T++  L AC H G  +EG +    + E+   
Sbjct: 408 AYGYHGQGRKALDLFPMMLRSGIL-PNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSV 466

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           R D+    C  V+D+  + G LD+A ++ +++   K    W   + A   H D
Sbjct: 467 RADVKHYTC--VVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKD 517


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/607 (37%), Positives = 343/607 (56%), Gaps = 46/607 (7%)

Query: 11  CSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINA 70
           CSS   V   H   L+  L+T     S++F        F +LS   ++ YA  LF  +  
Sbjct: 12  CSSMAEVKQQHSLLLRLGLSTNNHAMSRIF-------TFCSLSKHGDINYALKLFTTLPN 64

Query: 71  PSTNDFNAVLRGL-AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ 129
           P T  +N + +   + S  P+ ++L+Y  ML+     +A T    ++AC       E  Q
Sbjct: 65  PDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEE---EAKQ 121

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ--- 186
           +H+HVL+ GF  D      L+ VY   G +  A++VF  M   ++ SW +L++G +Q   
Sbjct: 122 LHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGL 181

Query: 187 -----------------------------GNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
                                        GN   EA  LF+RM++E   + +       L
Sbjct: 182 VDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATML 241

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
           +AC  +GA ++G  IH+Y+ +  + ++  +   +IDMY KCG LDKAF VF  +K ++ +
Sbjct: 242 SACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKR-V 300

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFN 336
            +WN M+  FA+HG G  A+ LF++M   A V PD ++++  L AC H+GLV++G   F 
Sbjct: 301 SSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFR 360

Query: 337 SMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395
            M +  G+ P  +HYG +VDLL RAGRL+EA  ++  + M  D  +   LLGAC+++G++
Sbjct: 361 YMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNL 420

Query: 396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEV 455
           E+ E    +++E+   N G +V+L N+YA+  +W+ V  VRK M +R VKK PGFS IE+
Sbjct: 421 ELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEM 480

Query: 456 GGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHS 515
            GV+++F    + H     IY K+ E++  I+  G+   T  VLHD+ EEE+EN L YHS
Sbjct: 481 EGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHS 540

Query: 516 EKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGA 575
           EKLA+A+GL+ T    +++V KNLR+C+DCH   K+ISKVY+ +II+RDR RFH F +G 
Sbjct: 541 EKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGE 600

Query: 576 CSCKDYW 582
           CSCKDYW
Sbjct: 601 CSCKDYW 607


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/512 (41%), Positives = 325/512 (63%), Gaps = 10/512 (1%)

Query: 77  NAVLRGLAHSSKPT---NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH 133
           N ++R  A S  P+    A  ++  MLR +   +  T  F LKACA    +   +Q H+ 
Sbjct: 112 NTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACAAFPGV--GVQAHAA 169

Query: 134 VLRHGFLADALLGTTLLDVYAKVGE--IVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
            L+ GF  D  +  TL+ +Y+  G   +  A+ VFD M      +W+A+I G  +  L+S
Sbjct: 170 ALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSS 229

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           +AV LF+ M+  GV +P+EVT++G LAA   LGA +    +  ++ +E +  +V +CNA+
Sbjct: 230 DAVGLFREMQASGV-RPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTLCNAL 288

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           ID  AKCG LD A  VF  +K  +++V+W +++ A A+ G G  A+ +FE+M  AGV+PD
Sbjct: 289 IDALAKCGDLDGAMAVFQGMK-ERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPD 347

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           DV+++  L AC+HAG+VD+G   F SM    G+ P ++HYG +VD+ GRAG ++ A + V
Sbjct: 348 DVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFV 407

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
             + M  + ++W+TL+ AC+ +G +E+ E  +R L+     +  ++V+LSN+YA   RW 
Sbjct: 408 HKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLSNVYALTRRWK 467

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
           +   +R+ M  R +KKVPG S +E+ G +H+F   D+SH +W+EIY  ++E+  +++  G
Sbjct: 468 EKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELRRAG 527

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
           + + TS VL D+ EE+KE AL +HSEKLA+AF L+ T   T ++V KNLR+C DCH  IK
Sbjct: 528 HISATSEVLLDLDEEDKEVALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIK 587

Query: 551 LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            IS VYNREIIVRDR RFHRFK+G+CSC D+W
Sbjct: 588 CISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 139/306 (45%), Gaps = 24/306 (7%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLT------TTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
           LL+ C++   V       +QAH        TT Q+      V + +I  Y+      L  
Sbjct: 152 LLKACAAFPGVG------VQAHAAALKFGFTTDQY------VSNTLIHMYSCFGGEFLGD 199

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++   S   ++A++ G   S   ++AV  +R+M     R D +T    L A A 
Sbjct: 200 ARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAAD 259

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL     +   V + G      L   L+D  AK G++  A  VF  M  R I SW ++
Sbjct: 260 LGALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSV 319

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I  LA      EAV +F+ MK  GV +P++V  +G L AC H G   EG    E +R   
Sbjct: 320 IDALAMEGRGKEAVAVFEEMKTAGV-RPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAY 378

Query: 241 -LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            +D  +     ++DM+ + G++++A E    +  + + + W T+V A   HG     LEL
Sbjct: 379 GIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGR----LEL 434

Query: 300 FEQMGR 305
            E + R
Sbjct: 435 GETITR 440


>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Brachypodium distachyon]
          Length = 884

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/534 (41%), Positives = 319/534 (59%), Gaps = 11/534 (2%)

Query: 52  LSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTC 111
           L  L  LA         + PST   N++LR L+ S    +A+ + R+M     R +A + 
Sbjct: 359 LPSLRALAVLQHHLTAASLPSTFCCNSILRCLSES----DALSFLRRMRTLGRRGNAFSL 414

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
           +  LK C     L    Q+H++V+  G L D+LL T+L+  YA  G    A+KVFDEM +
Sbjct: 415 AILLKPCR---TLSHARQLHANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVFDEMVM 471

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKM-EGVFKPNEVTVLGALAACGHLGAWKEGD 230
           +D  +WN LI   A+     + + LF  M+  E   KP+EVT +  L AC  LGA   G+
Sbjct: 472 KDTVAWNVLITCYARNKRTKDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALDFGE 531

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           +I EY  E      + V N+VI MY +CG ++KA++VF +   +KS+VTW+ M+M  A +
Sbjct: 532 QIWEYAVEHGYGCELKVRNSVITMYTRCGCVEKAYQVFCHTP-QKSVVTWSAMIMGLAAN 590

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKH 349
           G G  A+  FE+M R+GV PD  ++   L AC+H+GLVD+G R F+ M     + PN++H
Sbjct: 591 GFGEDAISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRH 650

Query: 350 YGSVVDLLGRAGRLQEACD-IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
           YG +VDL+GRAG L EA + +VK + +  D  +W+TLLGAC+++G V++ E     L+E+
Sbjct: 651 YGCIVDLMGRAGLLDEAYELVVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLIEL 710

Query: 409 GSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKS 468
            +   GD+VLL N YAA   W+ V  VRK M+  +++  PG + +E+ G +H+F   D S
Sbjct: 711 KAQQAGDYVLLLNTYAAAGDWEKVAEVRKLMRENEIQTTPGCTTVELNGELHEFIADDAS 770

Query: 469 HVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTS 528
           H +  EIY KLDEI   ++  GY    S  LHD+  E KE AL YHSEKLA+AF L+   
Sbjct: 771 HPRKAEIYGKLDEINRHLRIAGYVPHVSSDLHDLDSEGKECALTYHSEKLAIAFALLVMP 830

Query: 529 EATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +   I++ KNLR+C DCH+  K+ S VYNR +IVRDR RFH F  G CSC DYW
Sbjct: 831 QRRPIRLAKNLRVCVDCHNFTKVFSGVYNRLVIVRDRTRFHHFNGGQCSCNDYW 884



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 114/263 (43%), Gaps = 23/263 (8%)

Query: 134 VLRHGFLADALLGTT--------LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           +LR G L   LL  T               +  +   +       +      N+++  L+
Sbjct: 335 LLRTGVL---LLSPTAASAFFSVAASSLPSLRALAVLQHHLTAASLPSTFCCNSILRCLS 391

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           +    S+A+   +RM+  G  + N  ++   L  C  L   ++   +H  +  E    + 
Sbjct: 392 E----SDALSFLRRMRTLG-RRGNAFSLAILLKPCRTLSHARQ---LHANVVIEGHLRDS 443

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-- 303
           ++  +++  YA CG+ D A +VFD +   K  V WN ++  +A +      L LF++M  
Sbjct: 444 LLATSLMRSYAICGVGDCARKVFDEM-VMKDTVAWNVLITCYARNKRTKDTLWLFDEMRR 502

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
           G + VKPD+V+ +  L AC   G +D G +++      G    +K   SV+ +  R G +
Sbjct: 503 GESEVKPDEVTCILLLQACTSLGALDFGEQIWEYAVEHGYGCELKVRNSVITMYTRCGCV 562

Query: 364 QEACDIVKSVSMGTDMVLWQTLL 386
           ++A  +       + +V W  ++
Sbjct: 563 EKAYQVFCHTPQKS-VVTWSAMI 584


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/511 (40%), Positives = 316/511 (61%), Gaps = 5/511 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N+++ G     +  +AV  +  M       D LT      A A+   +     +H +++
Sbjct: 239 WNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMV 298

Query: 136 RHGF-LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194
           R G+ + D + G  ++D+YAK+ +I +A+++FD M VRD  SWN LI G  Q  LASEA+
Sbjct: 299 RRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAI 358

Query: 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
            ++  M+     KP + T +  L A  HLGA ++G ++H    +  L+++V V   VID+
Sbjct: 359 HVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDL 418

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
           YAKCG LD+A  +F+    R+S   WN ++    VHG G +AL LF QM + G+ PD V+
Sbjct: 419 YAKCGKLDEAMLLFEQTP-RRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVT 477

Query: 315 YLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
           +++ L AC+HAGLVD G   FN M    G+KP  KHY  +VD+ GRAG+L +A D ++++
Sbjct: 478 FVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNM 537

Query: 374 SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
            +  D  +W  LLGAC+++G+VEM ++AS+ L E+   N G +VL+SN+YA   +WD V 
Sbjct: 538 PIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVD 597

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKS--HVKWREIYEKLDEIMFKIKEYGY 491
            VR  ++ ++++K PG+S IEV   ++ F++ ++   H +  EI  +L +++ KI+  GY
Sbjct: 598 EVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGY 657

Query: 492 AAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKL 551
               S VL D+ E+EKE  L  HSE+LA+AFG+I+T   T + ++KNLR+C DCH+  K 
Sbjct: 658 VPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKY 717

Query: 552 ISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ISK+  REIIVRD  RFH FKDG CSC D+W
Sbjct: 718 ISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 163/308 (52%), Gaps = 4/308 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A+  F ++       +NA+L GL  +++   AV  + +M+      DA+T S  L  C  
Sbjct: 123 AYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVL 182

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +      L +H + ++HG   +  +   ++DVY K+G +   +KVFD M  RD+ +WN++
Sbjct: 183 LGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSI 242

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I+G  QG   + AV++F  M+  GV  P+ +T+L   +A    G    G  +H Y+    
Sbjct: 243 ISGHEQGGQVASAVEMFCGMRDSGV-SPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRG 301

Query: 241 LDM-NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            D+ +++  NA++DMYAK   ++ A  +FD++  R + V+WNT++  +  +G    A+ +
Sbjct: 302 WDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDA-VSWNTLITGYMQNGLASEAIHV 360

Query: 300 FEQMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           ++ M +  G+KP   ++++ L A +H G +  G R+       G+  ++     V+DL  
Sbjct: 361 YDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYA 420

Query: 359 RAGRLQEA 366
           + G+L EA
Sbjct: 421 KCGKLDEA 428


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/579 (37%), Positives = 351/579 (60%), Gaps = 13/579 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALF 65
           L+ KC+S   +  I    +++H+              +K+I F   SP  + ++YA  LF
Sbjct: 35  LISKCNSLRELMQIQAYAIKSHIEDVS--------FVAKLINFCTESPTESSMSYARHLF 86

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             ++ P    FN++ RG +  + P      + ++L      D  T    LKACA   AL 
Sbjct: 87  EAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALE 146

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E  Q+H   ++ G   +  +  TL+++Y +  ++ SA+ VFD +    +  +NA+I G A
Sbjct: 147 EGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYA 206

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           + N  +EA+ LF+ M+ +   KPNE+T+L  L++C  LG+   G  IH+Y ++      V
Sbjct: 207 RRNRPNEALSLFREMQGK-YLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYV 265

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V  A+IDM+AKCG LD A  +F+ ++  K    W+ M++A+A HG   +++ +FE+M  
Sbjct: 266 KVNTALIDMFAKCGSLDDAVSIFEKMR-YKDTQAWSAMIVAYANHGKAEKSMLMFERMRS 324

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQ 364
             V+PD++++L  L AC+H G V++G + F+ M +  G+ P++KHYGS+VDLL RAG L+
Sbjct: 325 ENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLE 384

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           +A + +  + +    +LW+ LL AC  + ++++AE  S ++ E+  ++ GD+V+LSNLYA
Sbjct: 385 DAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYA 444

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
             ++W+ V  +RK MK+R   KVPG S IEV  V+H+FF+ D       +++  LDE++ 
Sbjct: 445 RNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVK 504

Query: 485 KIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
           ++K  GY   TS V+H ++ ++EKE  L YHSEKLA+ FGL++T   T+I+V KNLR+CR
Sbjct: 505 ELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCR 564

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH+  KLIS ++ R++++RD  RFH F+DG CSC D+W
Sbjct: 565 DCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/493 (42%), Positives = 318/493 (64%), Gaps = 8/493 (1%)

Query: 96  YRQMLRGSHRS--DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153
           +R M+     S  D      A  A ARV     T  +H+ + + GF  +A +  T+LD Y
Sbjct: 184 FRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSY 243

Query: 154 AKVG--EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM-KMEGVFKPNE 210
           AK G  ++  A+KVFD M  RD+ SWN++IA  AQ  +++EA+ L+ +M  + G  K N 
Sbjct: 244 AKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNA 302

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
           V +   L AC H GA + G +IH  +    L+ NV V  +++DMY+KCG ++ A   F  
Sbjct: 303 VALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRK 362

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
           IK  K++++W+ M+  + +HG G  ALE+F +M R+G++P+ +++++ L AC+HAGL+D+
Sbjct: 363 IK-EKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDE 421

Query: 331 GVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           G   +N+M    G++  ++HYG +VDLLGRAG L EA  ++K + +  D  +W  LL AC
Sbjct: 422 GRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSAC 481

Query: 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPG 449
           +++ +VE+AE++ ++L E+ ++N G +VLLSN+YA    W DV R+R  +K R ++K PG
Sbjct: 482 RIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPG 541

Query: 450 FSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKEN 509
           +S  E+ G I+ F+  DKSH +  EIY  L++++ +++E GY   T  VLHD+ EEEKE+
Sbjct: 542 YSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKES 601

Query: 510 ALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFH 569
           AL  HSEKLAVAF L+++   + I + KNLR+C DCH  +K I+K+  REII+RD  RFH
Sbjct: 602 ALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFH 661

Query: 570 RFKDGACSCKDYW 582
            FKDG CSC+DYW
Sbjct: 662 HFKDGLCSCRDYW 674


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/583 (38%), Positives = 352/583 (60%), Gaps = 18/583 (3%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFY-ALSPLNELAYAHAL 64
           +LLQ+      V  IH     A L   G  Q         + E   + S  + + YA  +
Sbjct: 37  SLLQRSKHINQVLPIH-----AQLIRNGHSQDPFM-----VFELLRSCSKCHAIDYASRI 86

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F+  + P+   + A++ G   S    +A+  Y +ML  S   D    +  LKAC   LAL
Sbjct: 87  FQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLAL 146

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG----VRDIASWNAL 180
            E  ++HS  L+ G  ++ L+   ++++Y K GE+  A++VF+EM      +D   W A+
Sbjct: 147 REGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAM 206

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G  +    + A++ F+ M+ E V +PNE T++  L+AC  LGA + G  +H Y+R+  
Sbjct: 207 IDGFVRNEEMNRALEAFRGMQGENV-RPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFE 265

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           +++N+ V NA+I+MY++CG +D+A  VFD +K R  ++T+NTM+   +++G   +A+ELF
Sbjct: 266 IELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR-DVITYNTMISGLSMNGKSRQAIELF 324

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
             M    ++P +V+++  L AC+H GLVD G ++F+SM  + GV+P ++HYG +VDLLGR
Sbjct: 325 RVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGR 384

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
            GRL+EA D+++++ M  D ++  TLL AC+++ ++E+ E  ++ L + G  + G +VLL
Sbjct: 385 VGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLL 444

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           S++YA+  +W +  +VR  MK   ++K PG S IEV   IH+F   D  H +   IYEKL
Sbjct: 445 SHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKL 504

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +E+   ++  GY      VL DI + EKE AL  HSE+LA+ +GLIST   T I+V KNL
Sbjct: 505 EELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNL 564

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH  IKLI+K+  R+++VRDR RFH F++GACSC DYW
Sbjct: 565 RVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/524 (40%), Positives = 330/524 (62%), Gaps = 8/524 (1%)

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS--DALTCSFALKACARVL 122
           F +I  P+     A+  G   ++   +++  +R M+     S  D      A  A ARV 
Sbjct: 7   FDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVP 66

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG--EIVSAKKVFDEMGVRDIASWNAL 180
               T  +H+ + + GF  +A +  T+LD YAK G  ++  A+KVFD M  RD+ SWN++
Sbjct: 67  DRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSM 125

Query: 181 IAGLAQGNLASEAVDLFKRM-KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           IA  AQ  +++EA+ L+ +M  + G  K N V +   L AC H GA + G  IH  +   
Sbjct: 126 IALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRM 185

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            L+ NV V  +++DMY+KCG ++ A   F  IK  K++++W+ M+  + +HG G  ALE+
Sbjct: 186 GLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMHGRGQEALEI 244

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLG 358
           F +M R+G++P+ +++++ L AC+HAGL+D+G   +N+M    G++  ++HYG +VDLLG
Sbjct: 245 FTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLG 304

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG L EA  ++K + +  D  +W  LL AC+++ +VE+AE++ ++L E+ ++N G +VL
Sbjct: 305 RAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVL 364

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YA    W DV R+R  +K R ++K PG+S  E+ G I+ F+  DKSH +  EIY  
Sbjct: 365 LSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSY 424

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L++++ +++E GY   T  VLHD+ EEEKE+AL  HSEKLAVAF L+++   + I + KN
Sbjct: 425 LEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKN 484

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH  +K I+K+  REII+RD  RFH FKDG CSC+DYW
Sbjct: 485 LRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 119/239 (49%), Gaps = 8/239 (3%)

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM-KMEGVFKPNEVTVLGALA 218
           + A++ FDE+   +     A+ +G  + NL   +++LF+ M   +     +E   L A +
Sbjct: 1   MDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFS 60

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL--LDKAFEVFDNIKCRKS 276
           A   +        +H  I +   + N  V N ++D YAK G   L+ A +VFD ++  + 
Sbjct: 61  ASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME--RD 118

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGR--AGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           +V+WN+M+  +A +G    A+ L+ +M     G+K + V+  A L AC HAG +  G  +
Sbjct: 119 VVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHI 178

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            N +   G++ N+    S+VD+  + GR++ A    + +    +++ W  ++    ++G
Sbjct: 179 HNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMHG 236


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/526 (40%), Positives = 331/526 (62%), Gaps = 11/526 (2%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L+YA+ +F  I+ P+   +N + RG A S  P+ A+ +YRQM+      D  T  F LKA
Sbjct: 80  LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKA 139

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
            ++ L + E   IHS  +R+GF +   +  +LL +YA  G+  SA  VF+ M  RD+ + 
Sbjct: 140 ISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAX 199

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            ++I G A     SEA+ LF+ M  EGV +P+  TV+  L+A   LGA + G ++H Y+ 
Sbjct: 200 ISVINGFALNGRPSEALTLFREMSAEGV-EPDGFTVVSLLSASAELGALELGRRVHVYLL 258

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  L  N  V N+++D+YAKC   D  +E        ++ V+W ++++  AV+G G  AL
Sbjct: 259 KVGLRENSHVTNSLLDLYAKC---DAIWEX------ERNAVSWTSLIVGLAVNGFGEEAL 309

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
           ELF +M   G+ P +++++  L AC+H G++D+G   F  M    G+ P ++HYG +VDL
Sbjct: 310 ELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDL 369

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L RAG +++A + ++++ +  + V W+TLLGAC ++G + + E A   L+++   + GD+
Sbjct: 370 LSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDY 429

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSNLY +  RW DV  +R++M    VKK  G+S +E+G  +++F   ++SH + +++Y
Sbjct: 430 VLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQDVY 489

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
             L++I   +K  GY   T+ VL DI EEEKE AL YHSEK A+AF  ++T+  T+I+V 
Sbjct: 490 ALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAPGTTIRVM 549

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+C DCH  IKL++KVY+REI++RDR RFH F+ G+CSCKDYW
Sbjct: 550 KNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/570 (40%), Positives = 344/570 (60%), Gaps = 25/570 (4%)

Query: 21  HIKQLQAH-LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAV 79
            +KQL A  + TT       F + S+I+ F   S L++L YA  +F QI  P++  +NA+
Sbjct: 41  QLKQLHAQTIRTTSSHHPNTFFLYSRILHF---SSLHDLRYAFRVFHQIENPNSFMWNAL 97

Query: 80  LRGLAHSS-KPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
           +R  A S+ +  +A+  Y +ML +GS   D  T  F LKACA + AL E  QIH+ +L+ 
Sbjct: 98  IRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKL 157

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           GF +D  +  +L+  YA    +  AK VFD M  R + SWN +I    +      A++LF
Sbjct: 158 GFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLF 217

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
              +M+  F+P+  T+     AC  +G+   G           +  +V++  +++DMY K
Sbjct: 218 G--EMQKFFEPDGYTIQSIANACAGMGSLSLG-----------IVNDVLLNTSLVDMYCK 264

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDDVSYL 316
           CG L+ A ++F  +  ++ + +WN+M++ F+ HG+   ALE F  M R   + P+ ++++
Sbjct: 265 CGSLELALQLFHRMP-KRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFV 323

Query: 317 AALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
             L ACNH GLV +G R F+ M     +KP ++HYG +VDLL RAG + EA D+V ++ M
Sbjct: 324 GVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPM 383

Query: 376 GTDMVLWQTLLGAC-QLYGDVEMAEIASRKLVEMGSNNC-GDFVLLSNLYAAYERWDDVG 433
             D+V+W++LL AC +    VE++E  +R+++E     C G +VLLS +YA+  RW+DVG
Sbjct: 384 RPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVG 443

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA 493
            VRK M ++ V K PG S IE+ GV H+FF  D SH +  EIY  LD I  +++  GY+ 
Sbjct: 444 MVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSP 503

Query: 494 GTS-CVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLI 552
            +S   + D   + K+ +L  HSE+LA+AFGL+ T     I++FKNLR+C +CH V KLI
Sbjct: 504 DSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLI 563

Query: 553 SKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           S+V+NREIIVRDR+RFH FKDGACSC DYW
Sbjct: 564 SRVFNREIIVRDRIRFHHFKDGACSCMDYW 593


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/583 (38%), Positives = 339/583 (58%), Gaps = 11/583 (1%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           + N +L +C    A+     +++ AH+  T         +R+++I FY     + L  A 
Sbjct: 60  DYNTVLNECLRKRAIREG--QRVHAHMIKTHYLPCVY--LRTRLIVFYV--KCDSLRDAR 113

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F  +   +   + A++   +     + A+  + QMLR     +  T +  L +C    
Sbjct: 114 HVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSS 173

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
                 QIHSH+++  + A   +G++LLD+YAK G+I  A+ +F  +  RD+ S  A+I+
Sbjct: 174 GFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIIS 233

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G AQ  L  EA++LF+R++ EG+ + N VT    L A   L A   G ++H ++    + 
Sbjct: 234 GYAQLGLDEEALELFRRLQREGM-QSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVP 292

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
             VV+ N++IDMY+KCG L  A  +FD +  R ++++WN M++ ++ HG+G   LELF  
Sbjct: 293 SYVVLQNSLIDMYSKCGNLTYARRIFDTLHER-TVISWNAMLVGYSKHGEGREVLELFNL 351

Query: 303 M-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPNMKHYGSVVDLLGR 359
           M     VKPD V+ LA L  C+H GL D G+ +F  M +    V+P+ KHYG VVD+LGR
Sbjct: 352 MIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGR 411

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGR++ A + VK +       +W  LLGAC ++ ++++ E    +L+++   N G++V+L
Sbjct: 412 AGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVIL 471

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SNLYA+  RW+DV  +R  M  + V K PG S+IE+  V+H F  SD SH +  E+  K+
Sbjct: 472 SNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKV 531

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
            E+  + KE GY    SCVLHD+ EE+KE  L  HSEKLA+ FGLI+T E+  I+V KNL
Sbjct: 532 QELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPESVPIRVIKNL 591

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RIC DCH+  K  SK+Y RE+ +RD+ RFHR   G CSC DYW
Sbjct: 592 RICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/593 (39%), Positives = 353/593 (59%), Gaps = 34/593 (5%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L + CS    +  +H   L+   TT     + LF +  KI++    S  +++ YA  +F
Sbjct: 34  SLAETCSDMSQLKQLHAFTLR---TTYPDEPATLF-LYGKILQLS--SSFSDVNYAFRVF 87

Query: 66  RQINAPSTNDFNAVLRGLAHS-SKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLA 123
             I   S+  +N ++R  AH  S+   A + YR+ML RG    D  T  F LKACA +  
Sbjct: 88  DSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFG 147

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L E  Q+H  +++HGF  D  +   L+  Y   G +  A+KVFDEM  R + SWN++I  
Sbjct: 148 LSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 207

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-REERLD 242
           L +      A+ LF+   M+  F+P+  T+   L+AC  LG+   G   H ++ R   +D
Sbjct: 208 LVRVGEYDSALQLFR--DMQKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVD 265

Query: 243 --MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
             M+V++ N++I+MY KCG L  A +VF  ++ +  L +WN M++ FA HG    A+  F
Sbjct: 266 VAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMR-KHDLASWNAMILGFATHGKAEEAMNCF 324

Query: 301 EQMGRAG--VKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           + M + G  VKP+ V+++A L ACNH G+V+ G + F+ M    G++P ++HYG ++DLL
Sbjct: 325 DCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLL 384

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG-DVEMAEIASRKLV------EMGS 410
            RAG + EA D+V S+ M  D V+W++LL AC   G  VE++E  +R ++      +  +
Sbjct: 385 ARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQSSN 444

Query: 411 NNC-GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
           +NC G +VLLS +YA+  RW+DVG VRK M +  ++K PG S IE+ G+ ++FF  D SH
Sbjct: 445 SNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGISNEFFAGDTSH 504

Query: 470 VKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSE 529
            + ++IY++L  I  +++          ++    +  KE +L  HSE+LA+AFGLIS   
Sbjct: 505 PQTKQIYQQLKVIDDRLRS---------IVDATNDSSKEYSLRLHSERLAIAFGLISLPP 555

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            T I++FKNLR+C DCH+V KLISKV+N EIIVRDRVRFH FKDG+CSC DYW
Sbjct: 556 QTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 608


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/542 (39%), Positives = 323/542 (59%), Gaps = 5/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  YA     ++  AH LF  +       +NA++ G   +      V  ++ ML 
Sbjct: 208 VLNSLIHMYA--SCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLE 265

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D +T      AC R+        I  +    G L    L T L+D+YAK GE+  
Sbjct: 266 VRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDK 325

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+++FD M  RD+ +W+A+I+G  Q +   EA+ +F  M+   V  PN+VT++  L+AC 
Sbjct: 326 ARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEV-NPNDVTMVSVLSACA 384

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            LGA + G  +H YIR + L + V++  A++D YAKCG +  A + F+++  R +  TW 
Sbjct: 385 VLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTW-TWT 443

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-N 340
            ++   A +G    ALELF  M  A ++P DV+++  L AC+H  LV++G R F SM  +
Sbjct: 444 ALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQD 503

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            G+ P ++HYG +VDLLGRAG + EA   ++++ +  + V+W+ LL AC ++ +VE+ E 
Sbjct: 504 YGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEE 563

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A +++V +   + G+++LLSN YA+  +W +   VRK MK + V+K+PG S IE+ G I 
Sbjct: 564 ALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIF 623

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
           +FF  D  H +  EIYEK+ E++  IK  GY   T+    D+ E EK+ ++ +HSEKLA+
Sbjct: 624 EFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAI 683

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AFGL+ +    +I++ KNLR+C DCH   KLISKVYNREIIVRDR RFH FKDG CSC D
Sbjct: 684 AFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCND 743

Query: 581 YW 582
           YW
Sbjct: 744 YW 745



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 171/332 (51%), Gaps = 6/332 (1%)

Query: 58  LAYAHALFRQINAP--STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFA 114
           L+YA  LFR    P  S   +N ++R    +  P +A+  + +ML  +  S D  T +  
Sbjct: 118 LSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANT 177

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           +K+C+R+  L     + ++  + GF+ D  +  +L+ +YA  G++V+A  +F  + V+ +
Sbjct: 178 VKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGV 237

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            +WNA+IAG  +     E V++FK M +E     +EVT+L    ACG LG    G  I E
Sbjct: 238 IAWNAMIAGYVKNGDWKEVVEMFKGM-LEVRAPFDEVTLLSVATACGRLGDANLGQWIAE 296

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           Y  E+ +  +  +  A++DMYAKCG LDKA  +FD +  R  +V W+ M+  +       
Sbjct: 297 YAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSR-DVVAWSAMISGYTQSDRCR 355

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            AL +F +M    V P+DV+ ++ L AC   G ++ G  + + +    +   +    ++V
Sbjct: 356 EALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALV 415

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           D   + G +++A    +S+ +  +   W  L+
Sbjct: 416 DFYAKCGCIKDAVKAFESMPV-RNTWTWTALI 446


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/583 (37%), Positives = 346/583 (59%), Gaps = 12/583 (2%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTG-QFQSKLFPVRSKIIEFYALSPLNELAY 60
           +N  +LLQ C +  A+     KQL A +   G  F +    + +K++  Y +   + L+ 
Sbjct: 76  SNYASLLQSCIARKAIKPG--KQLHAQVCLAGFGFDTV---IATKLVNLYCVC--DSLSS 128

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF +I   +   +N ++RG A +     AV  Y QM       D  T  F LKACA 
Sbjct: 129 ARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAA 188

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + A+    +IH HV++ G+  D  +G  L+D+YAK G + SA++VFD++ VRD   WN++
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSM 248

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +A  +Q       + L   M + G+ +P E T++ A++A     A  +G ++H     + 
Sbjct: 249 LAAYSQNGHPDACLSLCSEMVLTGL-RPTEATLVTAISASADNAALPQGRELHGLSWRQE 307

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
            + +  V  A++DMYAKCG +  A  +F+ +  ++ +V+WN M+  +A+HG    AL+LF
Sbjct: 308 FESHDKVKTALVDMYAKCGSVRVARNLFERLGVKR-VVSWNAMITGYAMHGHATEALDLF 366

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
           E+M R   KPD ++++  L AC+H GL+++G   F +M  +  + P ++HY  +VDLLG 
Sbjct: 367 EEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGH 425

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           +GRL EA +++  + +  D  +W  LL +C+++ +VE+ EIA  +L+E+  ++ G++V+L
Sbjct: 426 SGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVIL 485

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YA   +W+ V ++RK M +R +KK    S+IEV   +H F + D SH    EIY +L
Sbjct: 486 SNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSEL 545

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           + +   +KE GY+  T  V HD+ ++EK N +C HSE+LA+AFGLIST   T + + KNL
Sbjct: 546 ERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNL 605

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RIC DCH  IK ISK+  REI VRD  R+H FKDG CSC DYW
Sbjct: 606 RICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/610 (36%), Positives = 344/610 (56%), Gaps = 46/610 (7%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH-ALFR 66
           LQKC +      + +KQ+ A +  +G  Q      +       +       +YAH   F 
Sbjct: 18  LQKCPTE-----VELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSF----SSYAHDVFFN 68

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
             + P T  +N ++RGL+ S +P  ++L Y +ML  S   +A T  F LKAC+ + A  E
Sbjct: 69  GFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQE 128

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA------- 179
           T QIH+H+ + G+  D     +L++ YA  G    A  +FD +   D  SWN+       
Sbjct: 129 TTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVK 188

Query: 180 -------------------------LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
                                    +I+G  Q  +  EA+ LF  M+   V  P+ V++ 
Sbjct: 189 AGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNV-PPDNVSLA 247

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
            AL+AC  LGA ++G  IH Y  + R  ++ V+C  +IDMYAKCG +++A  VF N+K  
Sbjct: 248 SALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKT- 306

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           KS+  W  ++  +A HG G  A+  F +M   GVKP+ +++ A L AC++ GLV++G  +
Sbjct: 307 KSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSV 366

Query: 335 FNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           FN++  +  +KP ++HYG +VDLLGRAG L EA   ++ + +  + V+W +LL ACQ++ 
Sbjct: 367 FNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHK 426

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           ++E+ E     L+EM SN+ G +V ++N++A  ++WD     R+ M+ + V KVPG S I
Sbjct: 427 NIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAI 486

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD-IGEEEKENALC 512
            + G  H+F   D+SH + +EI  K   +  K++E GY      +L D + +EEKE  + 
Sbjct: 487 SLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVH 546

Query: 513 YHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
            HSEKLA+ +GL+ T   T+I++ KNLR+C+DCH V+ LISK+Y R+I++RDR RFH FK
Sbjct: 547 QHSEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFK 606

Query: 573 DGACSCKDYW 582
           DG CSC DYW
Sbjct: 607 DGKCSCGDYW 616


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/619 (38%), Positives = 347/619 (56%), Gaps = 51/619 (8%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           + L +L+  C S        IKQ  A L TT        PV +   +   L+    L+YA
Sbjct: 17  SRLVSLIDSCKSMQ-----QIKQTHAQLITTALISH---PVSAN--KLLKLAACASLSYA 66

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPT---NAVLWYRQMLRG-SHRSDALTCSFALKA 117
           H LF QI  P    +N +++  AHS  P    N+++ +R + +      +  +  FA  A
Sbjct: 67  HKLFDQIPQPDLFIYNTMIK--AHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSA 124

Query: 118 CARVLALFETLQIHSHVLRHG-----FLADALLG-------------------------- 146
           C   L + E  Q+  H ++ G     F+ +AL+G                          
Sbjct: 125 CGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSW 184

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            TL+  Y   G +  AK++FD M  RD+ SW+ +IAG  Q     EA+D F +M   G  
Sbjct: 185 NTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGP- 243

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           KPNE T++ ALAAC +L A  +G  IH YI +  + MN  +  ++IDMYAKCG ++ A  
Sbjct: 244 KPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASR 303

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF   K ++ +  WN M+  FA+HG    A+ +FEQM    + P+ V+++A L AC+H  
Sbjct: 304 VFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGY 363

Query: 327 LVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           +V++G   F  M ++  + P ++HYG +VDLL R+G L+EA D++ S+ M  D+ +W  L
Sbjct: 364 MVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGAL 423

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK-NRDV 444
           L AC++Y D+E      R +  M  N+ G  VLLSN+Y+   RW++   +R+  + +RD 
Sbjct: 424 LNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNEISRDR 483

Query: 445 KKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
           KK+PG S IE+ G  H+F   D+SH + REIY  LDE+  K+K  GY      +LHDI +
Sbjct: 484 KKIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDD 543

Query: 505 EE-KENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
           EE KE AL  HSEKLA+AFGL++T+  T I++ KNLR+C DCH   K ISKVYNR IIVR
Sbjct: 544 EEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVR 603

Query: 564 DRVRFHRFKDGACSCKDYW 582
           DR R+H F+DG CSCKDYW
Sbjct: 604 DRTRYHHFEDGICSCKDYW 622


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/612 (37%), Positives = 362/612 (59%), Gaps = 54/612 (8%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLN--ELAYAHALFRQINAPSTNDFNAV 79
           + Q+ A    +GQ +  L    ++I+ F A S L+  +L YAH +F Q+   +   +N +
Sbjct: 32  LSQIHAVFIKSGQIRDTL--AAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTI 89

Query: 80  LRGLAHSS--KPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHVLR 136
           +RG + S   K   A+  + +M+       +  T    LKACA+   + +  QIH   L+
Sbjct: 90  IRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALK 149

Query: 137 HGFLAD---------------------------------------------ALLGTTLLD 151
           +GF  D                                              +L   ++D
Sbjct: 150 YGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMID 209

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
            Y ++G+  +A+ +FD+M  R + SWN +I+G +Q     +AV++F+ MK     +PN V
Sbjct: 210 GYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYV 269

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T++  L A   LG+ + G+ +H Y  +  + ++ V+ +A+IDMY+KCG+++KA  VF+ +
Sbjct: 270 TLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERL 329

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
             R++++TW+ M+  FA+HG    A++ F +M +AGV+P DV+Y+  L AC+HAGLV++G
Sbjct: 330 P-RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEG 388

Query: 332 VRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
            R F+ M +  G++P ++HYG +VDLLGR G L EA + + ++ +  D V+W+ LLGAC+
Sbjct: 389 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACR 448

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
           ++ +VEM +  +  L++M  ++ G +V LSN+YA+   W +V  +R  MK  D++K PG 
Sbjct: 449 MHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGC 508

Query: 451 SYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           S+I++ GV+H+F   D SH + +EI   L EI  K++  GY   T+ VL ++ EE+KENA
Sbjct: 509 SWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENA 568

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           L YHSEK+A AFGLISTS    I++ KNLRIC DCH  IKLISKVY R+I VRDR RFH 
Sbjct: 569 LHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHH 628

Query: 571 FKDGACSCKDYW 582
           F+DG+CSC DYW
Sbjct: 629 FQDGSCSCMDYW 640


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/510 (44%), Positives = 307/510 (60%), Gaps = 34/510 (6%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF 166
           D  T  F LK+CA +  +     +H   LR G   D  +G +L+D+Y K G I  A+K+F
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 165

Query: 167 DEMGVRDIASWNALIAGL-------------------------------AQGNLASEAVD 195
           D+M VRD+ASWNALIAG                                 Q   A +A+ 
Sbjct: 166 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALG 225

Query: 196 LFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
           LF  M  +G   KPN VT++  L AC    A + G +IH++     L +N  V  A+  M
Sbjct: 226 LFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGM 285

Query: 255 YAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313
           YAKC  L +A   FD I +  K+L+ WNTM+ A+A HG G  A+ +FE M RAGV+PD V
Sbjct: 286 YAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAV 345

Query: 314 SYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
           +++  L  C+H+GL+D G+  FN M     V+P ++HY  VVDLLGRAGRL EA +++  
Sbjct: 346 TFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQ 405

Query: 373 VSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV 432
           + M     +W  LL AC+ + ++E+AE+A+R+L  +  +N G++VLLSNLYA    W++V
Sbjct: 406 MPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEV 465

Query: 433 GRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYA 492
            ++R  +K + +KK PG S+IE+ G  H F  +DKSH + +EIY+ L+ +  KIK  GY 
Sbjct: 466 KKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYI 525

Query: 493 AGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLI 552
             TS VLHDI EEEKE  L  HSEKLA+AFGL++T     ++V KNLRIC DCH   K I
Sbjct: 526 PDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFI 585

Query: 553 SKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           SK+Y REIIVRD  RFH FKDG+CSC DYW
Sbjct: 586 SKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/525 (41%), Positives = 318/525 (60%), Gaps = 5/525 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF +I       +NA++ G   S +   A++ + +M   +   +  T    L AC  
Sbjct: 216 ARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGH 275

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             +      I S V  +GF ++  L   L+D+Y K GE   A+++FD +  +D+ SWN +
Sbjct: 276 TRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTM 335

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-REE 239
           I G +  +L  EA+ LF+ M    V KPN+VT LG L AC  LGA   G  +H YI +  
Sbjct: 336 IGGYSYLSLYEEALALFEVMLRSNV-KPNDVTFLGILHACACLGALDLGKWVHAYIDKNL 394

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
           R   N  +  ++IDMYAKCG ++ A  VF ++  R +L +WN M+  FA+HG   RAL L
Sbjct: 395 RNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSR-NLASWNAMLSGFAMHGHAERALAL 453

Query: 300 FEQMGRAGV-KPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLL 357
           F +M   G+ +PDD++++  L AC  AGLVD G + F SM  + G+ P ++HYG ++DLL
Sbjct: 454 FSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLL 513

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
            RA + +EA  ++K++ M  D  +W +LL AC+ +G VE  E  + +L ++   N G FV
Sbjct: 514 ARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFV 573

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YA   RWDDV R+R  + ++ +KKVPG + IE+ G +H+F   DK H +   IY+
Sbjct: 574 LLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYK 633

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            L+E+   ++E G+   TS VL+D+ EE KE AL  HSEKLA++FGLI T   T+I++ K
Sbjct: 634 MLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVK 693

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+C +CH   KLISK++NREII RDR RFH FKDG CSC D W
Sbjct: 694 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/453 (29%), Positives = 228/453 (50%), Gaps = 45/453 (9%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL+KC +      IH   ++  L  T      +F V+SK+I F A+SP  +L+YA +LF 
Sbjct: 34  LLEKCKNINTFKQIHSLIIKTGLNNT------VF-VQSKLIHFCAVSPSGDLSYALSLFE 86

Query: 67  QINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +      ++   +N+++RG + SS P +++  + +ML    + ++ T  F  K+C +  A
Sbjct: 87  ENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKA 146

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI---------------VS------- 161
             E  Q+H+H L+     +  + T+++ +YA VGE+               VS       
Sbjct: 147 THEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITG 206

Query: 162 ---------AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
                    A+++FDE+ V+D+ SWNA+I+G  Q     EA+  F  M+   V  PN+ T
Sbjct: 207 YVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVL-PNKST 265

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           ++  L+ACGH  + + G  I  ++R+     N+ + NA+IDMY KCG  D A E+FD I+
Sbjct: 266 MVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIE 325

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K +++WNTM+  ++       AL LFE M R+ VKP+DV++L  L AC   G +D G 
Sbjct: 326 -EKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGK 384

Query: 333 RLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
            +   +  N     N   + S++D+  + G ++ A  + +S+    ++  W  +L    +
Sbjct: 385 WVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMH-SRNLASWNAMLSGFAM 443

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           +G  E A     ++V  G     D   +  L A
Sbjct: 444 HGHAERALALFSEMVNKGLFRPDDITFVGVLSA 476


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/527 (40%), Positives = 332/527 (62%), Gaps = 8/527 (1%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDF--NAVLRGLAHSSKPTNAVLWYRQM-LRG 102
           I    +L     ++YAH +F +I  P  N F  N ++RG A      +A   YR+M + G
Sbjct: 57  IFYLVSLPSPPPMSYAHKVFSKIEKP-INVFIWNTLIRGYAEIGNSISAFSLYREMRVSG 115

Query: 103 SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA 162
               D  T  F +KA   +  +     IHS V+R GF +   +  +LL +YA  G++ SA
Sbjct: 116 LVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASA 175

Query: 163 KKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
            KVFD+M  +D+ +WN++I G A+     EA+ L+  M  +G+ KP+  T++  L+AC  
Sbjct: 176 YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGI-KPDGFTIVSLLSACAK 234

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           +GA   G ++H Y+ +  L  N+   N ++D+YA+CG +++A  +FD +   K+ V+W +
Sbjct: 235 IGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTS 293

Query: 283 MVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-AN 340
           +++  AV+G G  A+ELF+ M    G+ P +++++  L AC+H G+V +G   F  M   
Sbjct: 294 LIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREE 353

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             ++P ++H+G +VDLL RAG++++A + +KS+ M  ++V+W+TLLGAC ++GD ++AE 
Sbjct: 354 YKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEF 413

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A  +++++  N+ GD+VLLSN+YA+ +RW DV ++RK M    VKKVPG S +EVG  +H
Sbjct: 414 ARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVH 473

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
           +F   DKSH +   IY KL E+  +++  GY    S V  D+ EEEKENA+ YHSEK+A+
Sbjct: 474 EFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAI 533

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           AF LIST E + I V KNLR+C DCH  IKL+SKVYNREI+VRDR R
Sbjct: 534 AFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/582 (37%), Positives = 359/582 (61%), Gaps = 17/582 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +LQ C++   ++     QL  H+   G FQ+    V +K     A S L+ + YA +L  
Sbjct: 13  ILQACNTLPKLA-----QLHTHIIKLG-FQNNPL-VLTKFTS--ASSNLDAIPYAMSLVF 63

Query: 67  QINAPSTND---FNAVLRGLAHSSKPT-NAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +      D   F+ ++R  A SS+   NA+ +Y  ML      +     F LKACA + 
Sbjct: 64  SVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLR 123

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV-GEIVSAKKVFDEMGVRDIASWNALI 181
            L     +H  +++ GF  D  +  T++ +Y    G +  A+K+FDEM   D  +W A+I
Sbjct: 124 DLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMI 183

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            G A+   ++ AV LF++M++ GV  P++VT++  L+AC  LGA + G  I  YI +ER+
Sbjct: 184 GGYARLGQSAGAVGLFRKMQIAGVC-PDDVTMVSVLSACTDLGALELGKWIESYIEKERV 242

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
              V + NA++DM+AKCG +DKA  +F N+  ++++V+W ++++  A+HG G  A+ LFE
Sbjct: 243 LKTVELSNALVDMFAKCGDVDKALGLFRNMS-KRTIVSWTSVIVGLAMHGRGLEAVSLFE 301

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRA 360
           +M  +G+ P+D++++  L AC+H+GLV+ G + F+ M    G+ P ++HYG +VDLL RA
Sbjct: 302 EMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRA 361

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G + EA + V+ + +  + ++W+TL+ AC+++G++++ E  S++L+     +  ++VLLS
Sbjct: 362 GLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLS 421

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+Y     W+   ++R AM  + ++KVPG + IE+   IH+F   D+SH ++ EI + ++
Sbjct: 422 NIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVN 481

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           E+  ++K  GYA  T+ V  DI EE+KE+AL  HSEKLA+AF L++T   + I++ KNLR
Sbjct: 482 EMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLR 541

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +C DCH   K ISK+YNREI++RDR RFH F+DG CSC D+W
Sbjct: 542 VCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/597 (38%), Positives = 341/597 (57%), Gaps = 39/597 (6%)

Query: 20  IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAV 79
           +H+  +   +       S LF + S +I FY  S   +LA  H +F  +       +NA+
Sbjct: 189 LHLGSVLHGMVIKASLSSDLFILNS-LINFYGSSGAPDLA--HRVFTNMPGKDVVSWNAM 245

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           +   A    P  A+L +++M     + + +T    L ACA+ + L     I S++  +GF
Sbjct: 246 INAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGF 305

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI------------------------- 174
               +L   +LD+Y K G I  AK +F++M  +DI                         
Sbjct: 306 TEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDA 365

Query: 175 ------ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
                 A+WNALI+   Q      A+ LF  M++    KP+EVT++ AL A   LGA   
Sbjct: 366 MPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDF 425

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G  IH YI++  +++N  +  +++DMYAKCG L+KA EVF  ++ RK +  W+ M+ A A
Sbjct: 426 GHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVE-RKDVYVWSAMIGALA 484

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNM 347
           ++G G  AL+LF  M  A +KP+ V++   LCACNHAGLV++G +LF  M    G+ P +
Sbjct: 485 MYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQI 544

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
           +HY  VVD+ GRAG L++A   ++ + +     +W  LLGAC  +G+VE+AE+A + L+E
Sbjct: 545 QHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLE 604

Query: 408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDK 467
           +   N G FVLLSN+YA    W+ V  +RK M++ DVKK P  S I+V G++H+F   D 
Sbjct: 605 LEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDN 664

Query: 468 SHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK--ENALCYHSEKLAVAFGLI 525
           SH   ++IY KLDEI  K K  GY    S +L  + EE+   E +L  HSEKLA+AFGLI
Sbjct: 665 SHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQ-LSEEDNLMEQSLNVHSEKLAIAFGLI 723

Query: 526 STSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ST+ +  I++ KN+RIC DCH   KL+S++Y+R+I++RDR RFH F+ G CSC DYW
Sbjct: 724 STASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 205/425 (48%), Gaps = 43/425 (10%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
            N+   + +C++      + +KQ+ AH+  T +F        SK++  YA+S  + L YA
Sbjct: 73  TNILEFIDQCTNT-----MQLKQIHAHMLRTSRFCDPY--TASKLLTAYAISSCSCLIYA 125

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFALKACAR 120
             +F QI  P+   +N ++RG A SS PT + L +  ML   S   +  T  F  KA +R
Sbjct: 126 KNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASR 185

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L     +H  V++    +D  +  +L++ Y   G    A +VF  M  +D+ SWNA+
Sbjct: 186 LKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAM 245

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I   A G L  +A+ LF+ M+M+ V KPN +T++  L+AC      + G  I  YI    
Sbjct: 246 INAFALGGLPDKALLLFQEMEMKDV-KPNVITMVSVLSACAKKIDLEFGRWICSYIENNG 304

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM----------------- 283
              ++++ NA++DMY KCG ++ A ++F+ +   K +V+W TM                 
Sbjct: 305 FTEHLILNNAMLDMYVKCGCINDAKDLFNKMS-EKDIVSWTTMLDGHAKLGNYDEAHCIF 363

Query: 284 --------------VMAFAVHGDGPRALELFEQMGRA-GVKPDDVSYLAALCACNHAGLV 328
                         + A+  +G    AL LF +M  +   KPD+V+ + ALCA    G +
Sbjct: 364 DAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAI 423

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           D G  +   +    +  N     S++D+  + G L +A ++  +V    D+ +W  ++GA
Sbjct: 424 DFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVER-KDVYVWSAMIGA 482

Query: 389 CQLYG 393
             +YG
Sbjct: 483 LAMYG 487


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/563 (39%), Positives = 343/563 (60%), Gaps = 7/563 (1%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           ++Q+ A +  TG  +++    +     + A SP+   +Y   LF  I  P T  F++++ 
Sbjct: 35  LQQIHARIIITGLGRTRSLITKLLSFAYAAASPI---SYTRRLFFSIPKPDTFLFHSLIT 91

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
             +  S P  ++L YR+ML  +  S   T S  +K+ A + A      IH HV   G+  
Sbjct: 92  LTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGL 151

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           DA +   L+  YAK G ++ A+KVFD+M  + + +WN++I+G  Q     EAV+LF  M+
Sbjct: 152 DAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQ 211

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
             GV KP+  T +  L+AC  +GA   G  +HEYI     D+NVV+  A+++MY++CG +
Sbjct: 212 DLGV-KPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNV 270

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
            KA EVFD+++  K++V W  M+  + +HG G +A+ELF +M   G +P++V+++A L A
Sbjct: 271 SKAREVFDSME-EKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSA 329

Query: 322 CNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM- 379
           C HAGLVD+G ++F +M    G+ P+++H   +VD+LGRAG L EA   +K+ S      
Sbjct: 330 CAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAP 389

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
            +W  +LGAC+++ + ++    +  L+ +   N G +V+LSN+YA   R D V ++R  M
Sbjct: 390 AVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIM 449

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
               +KK  G+S I+V   ++ F   DKSH K  +IY  LDE+M + +E GY   +  V+
Sbjct: 450 IRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVM 509

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           H++ EEE+E AL YHSEKLA+AFGL+ T    +I++ KNLR+C DCH  IK IS + NRE
Sbjct: 510 HEVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANRE 569

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           I VRDR+RFH FKDG+CSC+DYW
Sbjct: 570 INVRDRLRFHHFKDGSCSCQDYW 592


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/513 (40%), Positives = 332/513 (64%), Gaps = 9/513 (1%)

Query: 77  NAVLRGLAHSSKPT---NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET-LQIHS 132
           N ++R    S  P+    A  ++  MLR +   +  T  F LK+CA +    +  LQ H+
Sbjct: 101 NTLIRTHVTSPFPSARRRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHA 160

Query: 133 HVLRHGFLADALLGTTLLDVYA--KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
             L+ GF AD  +  TL+ +Y+    G +  A+ VF+ M      +W+A+I G  +  L+
Sbjct: 161 AALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLS 220

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
           S+AV LF+ M++ GV +P+EVTV+G LAA   LGA +    +  ++  E +  +V +CNA
Sbjct: 221 SDAVVLFRGMQVSGV-RPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTLCNA 279

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           +ID  AKCG +D A  VF+ ++  +++V+W +++ A A+ G G  A+ +FE+M   GV P
Sbjct: 280 LIDTLAKCGDVDGAVAVFEGME-ERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLP 338

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           DDV+++  L AC+HAG+VD+G   F+SM    G++P ++HYG +VD+ GRAG +++  + 
Sbjct: 339 DDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEF 398

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW 429
           V+++ M  + ++W+TL+ AC+ +G +E+ E  +R L+     +  ++V+LSN+YA  +RW
Sbjct: 399 VRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNVYALTQRW 458

Query: 430 DDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEY 489
            +   +R+ M  R +KKVPG S +E+ G +H+F   D+SH +++EIY  ++E+  +++  
Sbjct: 459 KEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEMSRELRRI 518

Query: 490 GYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVI 549
           G+ A TS VL D+ EE+KE AL +HSEKLA+AF L+ T   T ++V KNLR+C DCH  I
Sbjct: 519 GHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAI 578

Query: 550 KLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K IS+VYNREI+VRDR RFHRFKDG+CSCKD+W
Sbjct: 579 KCISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 125/265 (47%), Gaps = 6/265 (2%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  Y+      L  A  +F ++   S   ++A++ G   +   ++AV+ +R M  
Sbjct: 173 VSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQV 232

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              R D +T    L A A + AL  T  +   V R G      L   L+D  AK G++  
Sbjct: 233 SGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDG 292

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A  VF+ M  R + SW ++I  LA      EAV +F+ MK  GV  P++V  +G L AC 
Sbjct: 293 AVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVL-PDDVAFIGVLTACS 351

Query: 222 HLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
           H G   EG    + ++ E  ++  +     ++DM+ + G++++  E    +  + + + W
Sbjct: 352 HAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIW 411

Query: 281 NTMVMAFAVHGDGPRALELFEQMGR 305
            T+V A   HG     LEL E + R
Sbjct: 412 RTLVAACRAHGR----LELGESITR 432


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/579 (36%), Positives = 349/579 (60%), Gaps = 13/579 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALF 65
           L+ KC+S   +  I    +++H+              +K+I F   SP  + ++YA  LF
Sbjct: 35  LISKCNSLRELMQIQAYAIKSHIEDVS--------FVAKLINFCTESPTESSMSYARHLF 86

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             ++ P    FN++ RG +  + P      + ++L      D  T    LKACA   AL 
Sbjct: 87  EAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALE 146

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E  Q+H   ++ G   +  +  TL+++Y +  ++ SA+ VFD +    +  +NA+I G A
Sbjct: 147 EGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYA 206

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           + N  +EA+ LF+ M+ +   KPNE+T+L  L++C  LG+   G  IH+Y ++      V
Sbjct: 207 RRNRPNEALSLFREMQGK-YLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYV 265

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V  A+IDM+AKCG LD A  +F+ ++  K    W+ M++A+A HG   +++ +FE+M  
Sbjct: 266 KVNTALIDMFAKCGSLDDAVSIFEKMR-YKDTQAWSAMIVAYANHGKAEKSMLMFERMRS 324

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQ 364
             V+PD++++L  L AC+H G V++G + F+ M +  G+ P++KHYGS+VDLL  AG L+
Sbjct: 325 ENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLE 384

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           +A + +  + +    +LW+ LL AC  + ++++AE  S ++ E+  ++ GD+V+LSNLYA
Sbjct: 385 DAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYA 444

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
             ++W+ V  +RK MK+R   KVPG S IEV  V+H+FF+ D       +++  LDE++ 
Sbjct: 445 RNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVK 504

Query: 485 KIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
           ++K  GY   TS V+H ++ ++EKE  L YHSEKLA+ FGL++T   T+I+V KNLR+CR
Sbjct: 505 ELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCR 564

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH+  KLIS ++ R+++ RD  RFH F+DG CSC D+W
Sbjct: 565 DCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/529 (39%), Positives = 326/529 (61%), Gaps = 9/529 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  +F  I   + + +NA++ G A +  P  A+    QM     + D  T S  L A
Sbjct: 401 LNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLA 460

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA + +L    +IH +VLR+G   D  +GT+LL  Y   G+  SA+ +FD M  +++ SW
Sbjct: 461 CAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSW 520

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NA+I+G +Q  L  E++ LF++   EG+ + +E+ ++    AC  L A + G + H Y+ 
Sbjct: 521 NAMISGYSQNGLPYESLALFRKSLSEGI-QSHEIAIVSVFGACSQLSALRLGKEAHGYVL 579

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +     +  V  ++IDMYAK G + ++ +VFD +K  K++ +WN +++A  +HG G  A+
Sbjct: 580 KALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLK-DKNVASWNAIIVAHGIHGHGKEAI 638

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVVDL 356
           EL+E+M + G  PD  +Y+  L AC HAGLV++G++ F  M N   ++P ++HY  ++D+
Sbjct: 639 ELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDM 698

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L RAGRL +A  +V  +    D  +W +LL +C+ +G +E+ E  ++KL+E+  +   ++
Sbjct: 699 LARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENY 758

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI- 475
           VLLSNLYA   +WD V RVR+ MK   ++K  G S+IEVGG ++ F   D    K  EI 
Sbjct: 759 VLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIR 818

Query: 476 --YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
             + +L+E   +I E GY   TS VLH++GEEEK + L  HSEKLA++FGL+ T++ T++
Sbjct: 819 VIWRRLEE---RISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTL 875

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +++KNLRIC DCH+  KLISK   REI+VRD  RFH F+DG CSC DYW
Sbjct: 876 RIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 168/343 (48%), Gaps = 22/343 (6%)

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL--AL 124
           Q N PS   F   +  L  +   T A++     L  SH  +A   S   K    +L  A 
Sbjct: 2   QTNRPS---FLQEIAALCETDNLTTALI-----LIQSHSQNAAFISLQAKEAIGLLLQAC 53

Query: 125 FETLQIHSHVLRHGFLADA-------LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
                I +    H F++D+       +L T L+ +YA  G  + ++ VFD M  +++  W
Sbjct: 54  GNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQW 113

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NAL++G  +  L  + V +F  +  +  F+P+  T    + ACG +   + G+ IH  + 
Sbjct: 114 NALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVI 173

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  L ++V V NA++ MY KCG +D+A +VFD +    +LV+WN+M+ AF+ +G    + 
Sbjct: 174 KMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMP-ETNLVSWNSMICAFSENGFSRDSF 232

Query: 298 ELF-EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           +L  E +G  G+ PD V+ +  L  C   G VD G+ +       G+   +    ++V +
Sbjct: 233 DLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYM 292

Query: 357 LGRAGRLQEA-CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             + G L EA    VK+ +   ++V W T++ A  L GDV  A
Sbjct: 293 YSKCGYLNEAQMSFVKNNN--KNVVSWNTMISAFSLEGDVNEA 333



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 161/321 (50%), Gaps = 13/321 (4%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYAL--SPLNELAYAHAL 64
           LLQ C +   +     ++L   ++ +  +++  + + +++I+ YA+  SPL+    +  +
Sbjct: 49  LLQACGNQKDIETG--RRLHKFVSDSTHYRND-YVLNTRLIKMYAMCGSPLD----SRLV 101

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLA 123
           F  +   +   +NA++ G   +    + V  +  ++  +  + D  T    +KAC  +L 
Sbjct: 102 FDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILD 161

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           +     IH  V++ G + D  +G  L+ +Y K G +  A KVFD M   ++ SWN++I  
Sbjct: 162 VRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICA 221

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            ++   + ++ DL   M  E    P+ VTV+  L  C   G    G  IH    +  L  
Sbjct: 222 FSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSE 281

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            V+V NA++ MY+KCG L++A   F      K++V+WNTM+ AF++ GD   A  L ++M
Sbjct: 282 EVMVNNAMVYMYSKCGYLNEAQMSFVK-NNNKNVVSWNTMISAFSLEGDVNEAFNLLQEM 340

Query: 304 GRAG--VKPDDVSYLAALCAC 322
              G  +K ++V+ L  L AC
Sbjct: 341 QIQGEEMKANEVTILNVLPAC 361



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 164/356 (46%), Gaps = 26/356 (7%)

Query: 50  YALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM-LRGSH-RSD 107
           Y  S    L  A   F + N  +   +N ++   +       A    ++M ++G   +++
Sbjct: 291 YMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKAN 350

Query: 108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD 167
            +T    L AC   L L    ++H +  RH F     L    +  YAK G + SA+KVF 
Sbjct: 351 EVTILNVLPACLDKLQLRSLKELHGYSFRHCF-QHVELSNAFILAYAKCGALNSAEKVFH 409

Query: 168 EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227
            +G + ++SWNALI G AQ     +A+ L  +M   G  +P+  T+   L AC HL + +
Sbjct: 410 GIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQ-QPDWFTISSLLLACAHLKSLQ 468

Query: 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
            G +IH Y+    L+ +  V  +++  Y  CG    A  +FD +K  K+LV+WN M+  +
Sbjct: 469 YGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMK-DKNLVSWNAMISGY 527

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA----------GLVDDGVRLFNS 337
           + +G    +L LF +    G++  +++ ++   AC+            G V   ++  ++
Sbjct: 528 SQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDA 587

Query: 338 MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
              C          S++D+  ++G ++E+  +   +    ++  W  ++ A  ++G
Sbjct: 588 FVGC----------SIIDMYAKSGCIKESRKVFDGLK-DKNVASWNAIIVAHGIHG 632


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/612 (38%), Positives = 339/612 (55%), Gaps = 51/612 (8%)

Query: 10  KCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNEL-----AYAHAL 64
           KCS +       ++ L   L+  G       P+ S    F  L+ LN L      +AH L
Sbjct: 43  KCSISPLTISATLQNLLQPLSAPGPP-----PILSYAPVFQFLTGLNMLKLGHQVHAHML 97

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
            R +  P+    + ++   A S    ++V  +  +       D  T  F LK+   +L++
Sbjct: 98  LRGLQ-PTALVGSKMVAFYASSGDIDSSVSVFNGI------GDYFTFPFVLKSSVELLSV 150

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
           +    +H  +LR G   D  + T+L+ +Y K GEI  A KVFD M +RD++SWNAL+AG 
Sbjct: 151 WMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGY 210

Query: 185 -------------------------------AQGNLASEAVDLFKRM-KMEGVFKPNEVT 212
                                          +Q  LA +A+ LF  M K +   +PN VT
Sbjct: 211 TKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVT 270

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI- 271
           ++  L AC  L   + G +IHE      L+ N  V  A+  MYAKCG L  A   FD + 
Sbjct: 271 IMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLN 330

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
           +  K+L+ WNTM+ A+A +G G +A+  F +M +AG++PDD+++   L  C+H+GLVD G
Sbjct: 331 RNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVG 390

Query: 332 VRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
           ++ FN M+    + P ++HY  V DLLGRAGRL EA  +V  + M     +W +LL AC+
Sbjct: 391 LKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACR 450

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
            + ++EMAE A+RKL  +   N G++VLLSN+YA   RW +V ++R  +K++  KK PG 
Sbjct: 451 KHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGC 510

Query: 451 SYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           S+IE+ G  H F   D SH + +EIY  L+ +  K+K  GY   TS VLHDI EEEKE  
Sbjct: 511 SWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFN 570

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           L  HSEKLAVAFG+++T   T ++V KNLRIC DCH  +  IS++Y RE+IVRD  RFH 
Sbjct: 571 LIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHH 630

Query: 571 FKDGACSCKDYW 582
           FK G CSC DYW
Sbjct: 631 FKGGCCSCGDYW 642


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/487 (42%), Positives = 306/487 (62%), Gaps = 36/487 (7%)

Query: 130 IHSHVLRHGFLADALLGTT--LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG---- 183
           +H++V+R+       + TT  LLD+YAK G +  A+++F+ +  + + SW A+IAG    
Sbjct: 247 MHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRS 306

Query: 184 ---------------------------LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
                                       AQ N   +A +LF +M+  GV +P +VT++  
Sbjct: 307 NRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGV-RPTKVTIVSL 365

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
           L+ C   GA   G  +H YI +ER++++ ++  A++DMYAKCG ++ A  +F     R  
Sbjct: 366 LSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISR-D 424

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFN 336
           +  WN ++  FA+HG G  AL++F +M R GVKP+D++++  L AC+HAGLV +G +LF 
Sbjct: 425 ICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFE 484

Query: 337 SMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395
            M +  G+ P ++HYG +VDLLGRAG L EA +++KS+ +  + ++W  L+ AC+L+ + 
Sbjct: 485 KMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNP 544

Query: 396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEV 455
           ++ E+A+ +L+E+   NCG  VL+SN+YAA  RW D   VRK MK   +KK PG S IEV
Sbjct: 545 QLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEV 604

Query: 456 GGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHS 515
            G +H+F   D+SH + R I E L E+  K+ E GY   TS VL +I EEEKE AL YHS
Sbjct: 605 NGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHS 664

Query: 516 EKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGA 575
           EKLA+AFGLIST+ +T I++ KNLR+C DCH   KL+SK+Y R IIVRDR RFH F++G 
Sbjct: 665 EKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGY 724

Query: 576 CSCKDYW 582
           CSC DYW
Sbjct: 725 CSCGDYW 731



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 122/245 (49%), Gaps = 3/245 (1%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           N L  A ALF          + A+L   A ++    A   + QM     R   +T    L
Sbjct: 307 NRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLL 366

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
             CA   AL     +HS++ +     D +L T L+D+YAK G+I +A ++F E   RDI 
Sbjct: 367 SLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDIC 426

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE- 234
            WNA+I G A      EA+D+F  M+ +GV KPN++T +G L AC H G   EG K+ E 
Sbjct: 427 MWNAIITGFAMHGYGEEALDIFAEMERQGV-KPNDITFIGLLHACSHAGLVTEGKKLFEK 485

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            +    L   +     ++D+  + GLLD+A E+  ++  + + + W  +V A  +H + P
Sbjct: 486 MVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKN-P 544

Query: 295 RALEL 299
           +  EL
Sbjct: 545 QLGEL 549



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 152/359 (42%), Gaps = 23/359 (6%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL-----FRQINAPSTNDF 76
           I+QLQ H  +T +F              + LS L +    HA      F        NDF
Sbjct: 23  IQQLQHHPHSTLKFNPTPLQTPPTSPSQHDLSTLEQTKQIHAHIIKTHFHHALQIPLNDF 82

Query: 77  ----------NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
                     N V+      ++P NA+  Y Q+ +     D       LKAC +V     
Sbjct: 83  PSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQL 142

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             +IH  VL+ G   D  +G  L+ +Y +   +  A+ VFD+M  RD+ SW+ +I  L++
Sbjct: 143 GKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSR 202

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI--REERLDMN 244
                 A++L + M    V +P+EV ++  +         + G  +H Y+        M 
Sbjct: 203 NKEFDMALELIREMNFMQV-RPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMG 261

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           V    A++DMYAKCG L  A ++F+ +  +K++V+W  M+           A  LF+   
Sbjct: 262 VPTTTALLDMYAKCGHLGLARQLFNGLT-QKTVVSWTAMIAGCIRSNRLEEARALFDSTQ 320

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
                 D + + A L A   A  +D    LF+ M   GV+P      S++ L   AG L
Sbjct: 321 NR----DVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGAL 375


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/477 (42%), Positives = 301/477 (63%), Gaps = 4/477 (0%)

Query: 108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD 167
           A+T +  ++ CA +  L     +H + ++ GF+ D ++G TLL +YAK G I  A + F+
Sbjct: 325 AVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFN 384

Query: 168 EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227
           EM +RD  S+ A+I+G  Q   + E + +F  M++ G+  P + T+   L AC HL    
Sbjct: 385 EMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGI-NPEKATLASVLPACAHLAGLH 443

Query: 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
            G   H Y        + ++CNA+IDMYAKCG +D A +VFD +  ++ +V+WNTM++A+
Sbjct: 444 YGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMH-KRGIVSWNTMIIAY 502

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPN 346
            +HG G  AL LF+ M   G+KPDDV+++  + AC+H+GLV +G   FN+M  + G+ P 
Sbjct: 503 GIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPR 562

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
           M+HY  +VDLL RAG  +E    ++ + +  D+ +W  LL AC++Y +VE+ E  S+K+ 
Sbjct: 563 MEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQ 622

Query: 407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSD 466
           ++G  + G+FVLLSN+Y+A  RWDD  +VR   K +  +K PG S+IE+ GV+H F    
Sbjct: 623 KLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGG 682

Query: 467 -KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
            +SH +  +I  KLDE++ ++K  GY A +S V  D+ EEEKE  L YHSEKLA+AFG++
Sbjct: 683 YRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGIL 742

Query: 526 STSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           S S    I V KNLR+C DCH  IK IS V  R+I VRD  RFH FKDG C+C D+W
Sbjct: 743 SLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 190/395 (48%), Gaps = 21/395 (5%)

Query: 7   LLQKCS-----SNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           +L+ CS     S G   H  IK+L+         +S ++ V + +++FYA      L  A
Sbjct: 125 VLKACSALKEASEGREIHCDIKRLR--------LESNVY-VSTALVDFYA--KCGCLDDA 173

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             +F +++      +N+++ G +      + V      ++     ++ T    L A A+V
Sbjct: 174 KEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQV 233

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG-VRDIASWNAL 180
            +L    +IH   +R GF+ D ++GT +LDVY K   I  A+++FD MG V++  +W+A+
Sbjct: 234 NSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAM 293

Query: 181 IAGLAQGNLASEAVDLFKRMKM--EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           +      +   EA++LF ++ M  + V   + VT+   +  C +L     G  +H Y  +
Sbjct: 294 VGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIK 353

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
               ++++V N ++ MYAKCG+++ A   F+ +  R + V++  ++  +  +G+    L 
Sbjct: 354 SGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDA-VSFTAIISGYVQNGNSEEGLR 412

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           +F +M  +G+ P+  +  + L AC H   +  G         CG   +     +++D+  
Sbjct: 413 MFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYA 472

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + G++  A  +   +     +V W T++ A  ++G
Sbjct: 473 KCGKIDTARKVFDRMH-KRGIVSWNTMIIAYGIHG 506



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 157/326 (48%), Gaps = 23/326 (7%)

Query: 5   NALLQKCSSN-----GAVSHIHIKQL--QAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE 57
             LL+ C  +     G + H H+ +   + H T    F         K+++ Y     +E
Sbjct: 13  TVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPF----EKLVDLYI--ACSE 66

Query: 58  LAYAHALFRQINAPSTND--FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           L  A  +F ++     N   +N ++R  A +     A+  Y +ML      +  T  F L
Sbjct: 67  LKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVL 126

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           KAC+ +    E  +IH  + R    ++  + T L+D YAK G +  AK+VFD+M  RD+ 
Sbjct: 127 KACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVV 186

Query: 176 SWNALIAGLAQGNLASEAVDLFKRM--KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           +WN++I+G +   L   + D   R+  +M+    PN  T++G L A   + + + G +IH
Sbjct: 187 AWNSMISGFS---LHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIH 243

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            +        +VVV   ++D+Y KC  +D A  +FD +   K+ VTW+ MV A+ V    
Sbjct: 244 GFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFM 303

Query: 294 PRALELFEQMGRAGVKPDDVSYLAAL 319
             ALELF Q+    +  DDV  L+A+
Sbjct: 304 REALELFCQL---LMLKDDVIVLSAV 326



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 136/288 (47%), Gaps = 13/288 (4%)

Query: 111 CSFALKACARVLALFETLQIHSHVLR--HGFLADALLG-----TTLLDVYAKVGEIVSAK 163
           C+  L++C +  +LF    IH H+L+  H      L         L+D+Y    E+  A+
Sbjct: 12  CTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIAR 71

Query: 164 KVFDEMGVR--DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
            VFD+M  R  ++  WN LI   A      EA+DL+ +M   G+  PN  T    L AC 
Sbjct: 72  HVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGI-TPNRFTFPFVLKACS 130

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L    EG +IH  I+  RL+ NV V  A++D YAKCG LD A EVFD +  ++ +V WN
Sbjct: 131 ALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMH-KRDVVAWN 189

Query: 282 TMVMAFAVH-GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           +M+  F++H G       L  QM +  V P+  + +  L A      +  G  +      
Sbjct: 190 SMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVR 248

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            G   ++     ++D+ G+   +  A  I   + +  + V W  ++GA
Sbjct: 249 RGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 6/233 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A   F +++      F A++ G   +      +  + +M       +  T +  L ACA 
Sbjct: 379 AMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAH 438

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L      H + +  GF AD ++   L+D+YAK G+I +A+KVFD M  R I SWN +
Sbjct: 439 LAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTM 498

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I       +  EA+ LF  M+ EG+ KP++VT +  ++AC H G   EG      + ++ 
Sbjct: 499 IIAYGIHGIGLEALLLFDNMQSEGL-KPDDVTFICLISACSHSGLVAEGKYWFNAMTQDF 557

Query: 241 ---LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
                M    C  ++D+ ++ GL  +     + +     +  W  ++ A  V+
Sbjct: 558 GIIPRMEHYAC--MVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVY 608



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 96/203 (47%), Gaps = 11/203 (5%)

Query: 217 LAACGHLGAWKEGDKIHEYI-------REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
           L +C    +   G  IH+++        E  L    V    ++D+Y  C  L  A  VFD
Sbjct: 16  LESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFD 75

Query: 270 NIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
            +  R K++V WN ++ A+A +G    A++L+ +M   G+ P+  ++   L AC+     
Sbjct: 76  KMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEA 135

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            +G  +   +    ++ N+    ++VD   + G L +A ++   +    D+V W +++  
Sbjct: 136 SEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMH-KRDVVAWNSMISG 194

Query: 389 CQLYGDVEMAEIASRKLVEMGSN 411
             L+ +    E+A R LV+M ++
Sbjct: 195 FSLH-EGSYDEVA-RLLVQMQND 215


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/527 (38%), Positives = 327/527 (62%), Gaps = 4/527 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALK 116
           L YA  +F  +   +   ++A++ G   S     A+  + QM L+ +     +T    L+
Sbjct: 261 LLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLR 320

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA++  L    ++H ++++ G + D LLG TLL +YAK G I  A + FDEM  +D  S
Sbjct: 321 ACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVS 380

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           ++A+++G  Q   A+ A+ +F+ M++ G+  P+  T+LG L AC HL A + G   H Y+
Sbjct: 381 FSAIVSGCVQNGNAAVALSIFRMMQLSGI-DPDLTTMLGVLPACSHLAALQHGFCSHGYL 439

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
                  + ++CNA+IDMY+KCG +  A EVF+ +  R  +V+WN M++ + +HG G  A
Sbjct: 440 IVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEA 498

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVD 355
           L LF  +   G+KPDD++++  L +C+H+GLV +G   F++M+ +  + P M+H   +VD
Sbjct: 499 LGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVD 558

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           +LGRAG + EA   ++++    D+ +W  LL AC+++ ++E+ E  S+K+  +G  + G+
Sbjct: 559 ILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGN 618

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           FVLLSN+Y+A  RWDD   +R   K+  +KK+PG S+IE+ G++H F   D+SH++  +I
Sbjct: 619 FVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 678

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
             KL+E++ ++K  GY A  S V  D+ EEEKE  L YHSEKLA+AFG+++      I V
Sbjct: 679 NRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILV 738

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH  IK ++ +  REI VRD  RFH FK+G C+C D+W
Sbjct: 739 TKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 171/344 (49%), Gaps = 4/344 (1%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           N++  A  LF +I  PS   +N ++R  A +     A+  Y  ML    R +  T  F L
Sbjct: 57  NQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVL 116

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           KAC+ +LA+ + ++IHSH    G  +D  + T L+D YAK G +V A+++F  M  RD+ 
Sbjct: 117 KACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVV 176

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           +WNA+IAG +   L  +AV L  +M+ EG+  PN  T++G L   G   A   G  +H Y
Sbjct: 177 AWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC-PNSSTIVGVLPTVGEAKALGHGKALHGY 235

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
                 D  VVV   ++DMYAKC  L  A ++FD +  R   V+W+ M+  +        
Sbjct: 236 CVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNE-VSWSAMIGGYVASDCMKE 294

Query: 296 ALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
           ALELF+QM  +  + P  V+  + L AC     +  G +L   +   G   ++    +++
Sbjct: 295 ALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLL 354

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +  + G + +A      ++   D V +  ++  C   G+  +A
Sbjct: 355 SMYAKCGVIDDAIRFFDEMN-PKDSVSFSAIVSGCVQNGNAAVA 397



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 181/370 (48%), Gaps = 6/370 (1%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           ++ +H    G  +S +F V + +++FYA   +  L  A  LF  ++      +NA++ G 
Sbjct: 130 EIHSHAKMFG-LESDVF-VCTALVDFYAKCGI--LVEAQRLFSSMSHRDVVAWNAMIAGC 185

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
           +      +AV    QM       ++ T    L       AL     +H + +R  F    
Sbjct: 186 SLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGV 245

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
           ++GT LLD+YAK   ++ A+K+FD MGVR+  SW+A+I G    +   EA++LF +M ++
Sbjct: 246 VVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILK 305

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
               P  VT+   L AC  L     G K+H YI +    +++++ N ++ MYAKCG++D 
Sbjct: 306 DAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDD 365

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A   FD +  + S V+++ +V     +G+   AL +F  M  +G+ PD  + L  L AC+
Sbjct: 366 AIRFFDEMNPKDS-VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACS 424

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
           H   +  G      +   G   +     +++D+  + G++  A ++   +    D+V W 
Sbjct: 425 HLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDR-HDIVSWN 483

Query: 384 TLLGACQLYG 393
            ++    ++G
Sbjct: 484 AMIIGYGIHG 493



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 2/180 (1%)

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           L  L AC    +  E  KIH++  +   + +  V + +  +Y  C  +  A  +FD I  
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP- 70

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
             S++ WN ++ A+A +G    A++L+  M   GV+P+  +Y   L AC+    ++DGV 
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + +     G++ ++    ++VD   + G L EA  +  S+S   D+V W  ++  C LYG
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH-RDVVAWNAMIAGCSLYG 189


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/523 (38%), Positives = 320/523 (61%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
            + +F  +  P    +NA+L G   S         + QML    + +  T    L++C+ 
Sbjct: 206 GNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSS 265

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +L      Q+H+H++++    D  +GT L+D+YAK   +  A   FD +  RDI SW  +
Sbjct: 266 LLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVI 325

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I+G AQ + A +AV  F++M+ EG+ KPNE T+   L+ C H+   + G ++H    +  
Sbjct: 326 ISGYAQTDQAEKAVKYFRQMQREGI-KPNEYTLASCLSGCSHMATLENGRQLHAVAVKAG 384

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              ++ V +A++D+Y KCG ++ A  +F  +  R  +V+WNT++  ++ HG G +ALE F
Sbjct: 385 HFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISR-DIVSWNTIISGYSQHGQGEKALEAF 443

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGR 359
             M   G+ PD+ +++  L AC+  GLV++G + F+SM+   G+ P+++HY  +VD+LGR
Sbjct: 444 RMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGR 503

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG+  E    ++ +++    ++W+T+LGAC+L+G+V+  E A++KL EM       ++LL
Sbjct: 504 AGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILL 563

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN++A+  RWDDV  +R  M +R +KK PG S++EV G +H F + D SH K REIY KL
Sbjct: 564 SNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKL 623

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           D++   +   GY   T  VLH++  +EK   L YHSE+LA++F L+ST+    I++FKNL
Sbjct: 624 DKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNL 683

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RIC DCHD +KLIS + N+EI+VRD  RFH FK G CSC+D W
Sbjct: 684 RICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 134/269 (49%), Gaps = 8/269 (2%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           +  A  LF  +   +   +NA+L G A        +  + +M     +    T S  LK 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA   +L E   +H+  LR G   D  LG +L+D+Y+K G +  A KVF ++   D+ +W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           +A+I GL Q     EA +LF  M+ +G  +PN+ T+   ++   ++G  + G  IH  I 
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGA-RPNQFTLSSLVSTATNMGDLRYGQSIHGCIC 179

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF---AVHGDGP 294
           +   + + +V N +I MY K   ++   +VF+ +     LV+WN ++  F      G GP
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALLSGFYDSQTCGRGP 238

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACN 323
           R   +F QM   G KP+  ++++ L +C+
Sbjct: 239 R---IFYQMLLEGFKPNMFTFISVLRSCS 264


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/523 (42%), Positives = 310/523 (59%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  +       +  ++   A S     A     QM +   + +A+T    L ACA 
Sbjct: 183 ARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACAS 242

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             AL    ++H H L  G   D  +GT L+ +YAK G I  A+ VFD M VRD+ SWN +
Sbjct: 243 EGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVM 302

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I   A+     EA DLF +M+ EG  KP+ +  L  L AC   GA +   KIH +  +  
Sbjct: 303 IGAFAEHGRGHEAYDLFLQMQTEGC-KPDAIMFLSILNACASAGALEWVKKIHRHALDSG 361

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L+++V V  A++ MY+K G +D A  VFD +K R ++V+WN M+   A HG G  ALE+F
Sbjct: 362 LEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQHGLGQDALEVF 420

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGR 359
            +M   GVKPD V+++A L AC+HAGLVD+G   + +M    G++P++ H   +VDLLGR
Sbjct: 421 RRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGR 480

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGRL EA   + ++++  D   W  LLG+C+ YG+VE+ E+ +++ +++   N   +VLL
Sbjct: 481 AGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLL 540

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YA   +WD V  VR  M+ R ++K PG S+IEV   IH F  +D SH + +EI E  
Sbjct: 541 SNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESK 600

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           D+++ KIK  GY   T  VL +   ++KE  +C HSEKLA+ +GL+ T     I+VFKNL
Sbjct: 601 DKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNL 660

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH   KLISKV  REIIVRD  RFH FKDG CSC DYW
Sbjct: 661 RVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 177/336 (52%), Gaps = 3/336 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  +F  +   S   +NA++ G        +A+  +R+M     + +A T    LKA
Sbjct: 79  LQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKA 138

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA + AL    ++H+ +   G  +D  +GT LL +Y K G I  A+++FD +   DI SW
Sbjct: 139 CASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISW 198

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
             +I   AQ     EA  L  +M+ EG FKPN +T +  L AC   GA K   ++H +  
Sbjct: 199 TVMIGAYAQSGNGKEAYRLMLQMEQEG-FKPNAITYVSILNACASEGALKWVKRVHRHAL 257

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  L+++V V  A++ MYAK G +D A  VFD +K R  +V+WN M+ AFA HG G  A 
Sbjct: 258 DAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVR-DVVSWNVMIGAFAEHGRGHEAY 316

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           +LF QM   G KPD + +L+ L AC  AG ++   ++     + G++ +++   ++V + 
Sbjct: 317 DLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMY 376

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            ++G + +A  +   + +  ++V W  ++     +G
Sbjct: 377 SKSGSIDDARVVFDRMKV-RNVVSWNAMISGLAQHG 411



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 154/288 (53%), Gaps = 3/288 (1%)

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
           +D+      LK C +   L    Q+H  +++     +A +   LL VY + G +  A+ V
Sbjct: 26  TDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCV 85

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FD +  +  ASWNA+IAG  +   A +A+ LF+ M  EGV +PN  T +  L AC  L A
Sbjct: 86  FDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGV-QPNAGTYMIILKACASLSA 144

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            K G ++H  IR   L+ +V V  A++ MY KCG +++A  +FDN+     +++W  M+ 
Sbjct: 145 LKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL-MNHDIISWTVMIG 203

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
           A+A  G+G  A  L  QM + G KP+ ++Y++ L AC   G +    R+     + G++ 
Sbjct: 204 AYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLEL 263

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +++   ++V +  ++G + +A  +   + +  D+V W  ++GA   +G
Sbjct: 264 DVRVGTALVQMYAKSGSIDDARVVFDRMKV-RDVVSWNVMIGAFAEHG 310


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/560 (37%), Positives = 341/560 (60%), Gaps = 13/560 (2%)

Query: 33  GQFQSKL-----FPVRSKIIEFYALS----PLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           GQF+S L      P R  ++ F  L      L +L  A  LF +++  +   +NA++ GL
Sbjct: 111 GQFKSSLVLFSNMP-RRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGL 169

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
                   A+  +++M       D  T    L+ CA + +L    ++H+ +L+ GF   +
Sbjct: 170 TQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSS 229

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
           ++G++L  +Y K G +   +K+   M +R + +WN LIAG AQ     E ++ +  MKM 
Sbjct: 230 VVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMA 289

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           G F+P+++T +  L+AC  L    +G +IH  + +      + V +++I MY++ G L+ 
Sbjct: 290 G-FRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLED 348

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           + + F + +    +V W++M+ A+  HG G  ALELF QM    ++ ++V++L+ L AC+
Sbjct: 349 SIKAFVD-RENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACS 407

Query: 324 HAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           H+GL + G   F+ M     +KP ++HY  VVDLLGRAGRL+EA  +++S+ +  D ++W
Sbjct: 408 HSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIW 467

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
           +TLL AC+L+ + EMAE  S +++++   +   +VLLSN++A+   W +V ++RKAM++R
Sbjct: 468 KTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDR 527

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            V+K PG S++E+  ++H+F   DKSH ++ EI   L E+M ++K++GY      VLHD+
Sbjct: 528 SVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDM 587

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
             EEKE  L +HSEK A+AF L++TSE   I+V KNLR+C DCH+ IK IS++ NREIIV
Sbjct: 588 DNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIV 647

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFH FKDG CSC +YW
Sbjct: 648 RDASRFHHFKDGECSCGNYW 667



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 157/326 (48%), Gaps = 38/326 (11%)

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE------- 158
           SD    S  L++C ++ +LF   Q+HS ++  G   D  +   LL+ Y+K+G+       
Sbjct: 60  SDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVL 119

Query: 159 ------------------------IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194
                                   + SA+K+FDEM  R+IA+WNA+IAGL Q     +A+
Sbjct: 120 FSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQAL 179

Query: 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
            LFK M   G F P+E T+   L  C  L +   G ++H  + +   +++ VV +++  M
Sbjct: 180 SLFKEMYGLG-FLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHM 238

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
           Y K G L    ++  ++  R ++V WNT++   A +G     L  +  M  AG +PD ++
Sbjct: 239 YIKSGSLSDGEKLIKSMPIR-TVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKIT 297

Query: 315 YLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV- 373
           +++ L AC+    +  G ++   +   G    +    S++ +  R+G L+   D +K+  
Sbjct: 298 FVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLE---DSIKAFV 354

Query: 374 -SMGTDMVLWQTLLGACQLYGDVEMA 398
                D+VLW +++ A   +G  E A
Sbjct: 355 DRENFDVVLWSSMIAAYGFHGRGEEA 380


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/548 (39%), Positives = 326/548 (59%), Gaps = 18/548 (3%)

Query: 52  LSPLNELAYAH---------------ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWY 96
           LSPL+E   A                 LF ++       +N V+ G A +     A+   
Sbjct: 128 LSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMV 187

Query: 97  RQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV 156
           ++M + + R D+ T S  L        + +  +IH + +RHGF  D  +G++L+D+YAK 
Sbjct: 188 KEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKC 247

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
            ++  +   F  +  RD  SWN++IAG  Q     + +  F+RM  E V KP +V+    
Sbjct: 248 TQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKV-KPMQVSFSSV 306

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK 275
           + AC HL A   G ++H YI     D N  + ++++DMYAKCG +  A  +F+ I+ C +
Sbjct: 307 IPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDR 366

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
            +V+W  ++M  A+HG    A+ LFE+M   GVKP  V+++A L AC+HAGLVD+G + F
Sbjct: 367 DMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYF 426

Query: 336 NSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           NSM  + GV P ++HY +V DLLGRAGRL+EA D + ++       +W TLL AC+ + +
Sbjct: 427 NSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKN 486

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           +E+AE    K++ +   N G  V++SN+Y+A +RW D  ++R  M+   +KK P  S+IE
Sbjct: 487 IELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIE 546

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYH 514
           VG  +H F   DKSH  + +I E L+ ++ ++++ GY   T+ VLHD+ EE K + L  H
Sbjct: 547 VGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTH 606

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SE+LA+AFG+IST+  T+I+V KN+R+C DCH  IK ++K+  REIIVRD  RFH FK+G
Sbjct: 607 SERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNG 666

Query: 575 ACSCKDYW 582
           +CSC DYW
Sbjct: 667 SCSCGDYW 674



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 175/408 (42%), Gaps = 65/408 (15%)

Query: 12  SSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSK---IIEFYALSPLNELAYAHALFRQI 68
           + N  V   H+KQL A +  T    +K  P       II+ YA         +H L R  
Sbjct: 14  NPNTVVPTCHVKQLHAQIVKT----TKATPHSLAWICIIKCYA---------SHGLLRH- 59

Query: 69  NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL 128
              S   FN +LR    S          R +     R+  L   F L             
Sbjct: 60  ---SLASFN-LLRSFGISPD--------RHLFPSLLRASTLFKHFNLAQ----------- 96

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVG----------------------EIVSAKKVF 166
            +H+ V+R GF  D      L+++Y+K                        +I S +K+F
Sbjct: 97  SLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLF 156

Query: 167 DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW 226
           D M VRD+ SWN +IAG AQ  +  EA+++ K M  E + +P+  T+   L         
Sbjct: 157 DRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENL-RPDSFTLSSILPIFTEHANV 215

Query: 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
            +G +IH Y      D +V + +++IDMYAKC  ++ +   F  +  R + ++WN+++  
Sbjct: 216 TKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDA-ISWNSIIAG 274

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN 346
              +G   + L  F +M +  VKP  VS+ + + AC H   ++ G +L   +   G   N
Sbjct: 275 CVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDN 334

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSM-GTDMVLWQTLLGACQLYG 393
                S++D+  + G ++ A  I   + M   DMV W  ++  C ++G
Sbjct: 335 KFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHG 382


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/489 (42%), Positives = 321/489 (65%), Gaps = 7/489 (1%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY----A 154
           ML      +  T  F LKACA +  L     +H  V++ GF  +  +  TL+ +Y     
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
             G I  A+KVFDEM   D  SW+A+I G  +   +S+A++LF+ M+++GV  P+E+T++
Sbjct: 61  GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVC-PDEITMV 119

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L+AC  LGA + G  +  Y+ +ER+  NV + NA+IDM+AKCG +DKA  +F +++ R
Sbjct: 120 SVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRER 179

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
            ++V+W +++   A+HG G  A+ +FE+M R+GV PDDV ++  L AC+H+GLVD G R 
Sbjct: 180 -NIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRY 238

Query: 335 FNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           F+SM  +  + P ++HYG +VD+L RAG ++EA   V+ + +  + V+W+TL+ AC+ +G
Sbjct: 239 FDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHG 298

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           ++++ E  +R+L+     +  ++VLLSN+YA    W+   R+R+AM  + +KK+PG + I
Sbjct: 299 ELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMI 358

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           E+   I++F   DKSH + +EIYE +DE+  ++K  GY   T+ VL DI +E+KE+ L  
Sbjct: 359 ELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNR 418

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEKLA+AF L++T   T I++ KNLR+C DCH   K ISK+YNREI+VRDR RFH FK+
Sbjct: 419 HSEKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKN 478

Query: 574 GACSCKDYW 582
           G CSC+D+W
Sbjct: 479 GLCSCRDFW 487



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 125/256 (48%), Gaps = 12/256 (4%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           + +A  +F ++    +  ++A++ G     + ++A+  +R+M       D +T    L A
Sbjct: 65  IEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSA 124

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C  + AL     + S+V +     +  L   L+D++AK G++  A  +F  M  R+I SW
Sbjct: 125 CTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSW 184

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            ++I GLA      EAV +F+ M   GV  P++V  +G L+AC H G   +G +   Y  
Sbjct: 185 TSVIGGLAMHGRGVEAVAVFEEMVRSGV-TPDDVVFIGLLSACSHSGLVDKGKR---YFD 240

Query: 238 EERLDMNVVV----CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
             R D ++V        ++DM  + GL+ +A +    +    + V W T++ A   HG+ 
Sbjct: 241 SMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGE- 299

Query: 294 PRALELFEQMGRAGVK 309
              L+L E++ R  ++
Sbjct: 300 ---LKLGEKITRQLIR 312


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/545 (40%), Positives = 333/545 (61%), Gaps = 9/545 (1%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           +K+I  Y    L  +  A  +F +    +   +NA+ R LA        +  Y QM    
Sbjct: 117 TKLINMYY--ELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIG 174

Query: 104 HRSDALTCSFALKACA----RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
             SD  T ++ LKAC      V  L +  +IH+H+LRHG+ A+  + TTLLDVYAK G +
Sbjct: 175 TPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSV 234

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK-PNEVTVLGALA 218
             A  VF  M  ++  SW+A+IA  A+  +  +A++LF+ M  E     PN VT++  L 
Sbjct: 235 SYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQ 294

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC  L A ++G  IH YI   +LD  + V NA+I MY +CG +     VFDN+K ++ +V
Sbjct: 295 ACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMK-KRDVV 353

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +WN+++  + +HG G +A+++FE M   GV P  +S++  L AC+HAGLV++G  LF SM
Sbjct: 354 SWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESM 413

Query: 339 -ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
            +   + P M+HY  +VDLLGRA RL EA  +++ +       +W +LLG+C+++ +VE+
Sbjct: 414 LSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVEL 473

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
           AE AS  L E+   N G++VLL+++YA  + W +   V K ++ R ++K+PG S+IEV  
Sbjct: 474 AERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKR 533

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            ++ F + D+ + +  EI+  L ++  ++K  GY   T+ VL+D+ EEEKE  +  HSEK
Sbjct: 534 KVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEK 593

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LAVAFGLI+T++  +I++ KNLR+C DCH V K ISK  NREI+VRD  RFH F+DG CS
Sbjct: 594 LAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCS 653

Query: 578 CKDYW 582
           C DYW
Sbjct: 654 CGDYW 658



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 167/377 (44%), Gaps = 35/377 (9%)

Query: 26  QAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAH 85
           Q+HL  T    S++ PV      F +L+P   L         IN  ++N+ N +++ L  
Sbjct: 16  QSHLCYTSHVSSRV-PV-----SFVSLNPSANL---------INDINSNN-NQLIQSLCK 59

Query: 86  SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
                 A+     +L         T    + +CA+  +L   L +H  ++  GF  D  L
Sbjct: 60  GGNLKQAL----HLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFL 115

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
            T L+++Y ++G I  A KVFDE   R I  WNAL   LA      E +DL+ +M   G 
Sbjct: 116 ATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGT 175

Query: 206 FKPNEVTVLGALAACG----HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
              +  T    L AC      +   ++G +IH +I     + N+ V   ++D+YAK G +
Sbjct: 176 -PSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSV 234

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK--PDDVSYLAAL 319
             A  VF  +   K+ V+W+ M+  FA +    +ALELF+ M        P+ V+ +  L
Sbjct: 235 SYANSVFCAMP-TKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNML 293

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL---QEACDIVKSVSMG 376
            AC     ++ G  +   +    +   +    +++ + GR G +   Q   D +K     
Sbjct: 294 QACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKK---- 349

Query: 377 TDMVLWQTLLGACQLYG 393
            D+V W +L+    ++G
Sbjct: 350 RDVVSWNSLISIYGMHG 366



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 109/253 (43%), Gaps = 13/253 (5%)

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N LI  L +G    +A+ L           P + T    + +C    +   G  +H  + 
Sbjct: 51  NQLIQSLCKGGNLKQALHLLCCEP-----NPTQQTFEHLIYSCAQKNSLSYGLDVHRCLV 105

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +   D +  +   +I+MY + G +D+A +VFD  +  +++  WN +  A A+ G G   L
Sbjct: 106 DSGFDQDPFLATKLINMYYELGSIDRALKVFDETR-ERTIYVWNALFRALAMVGHGKELL 164

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGL----VDDGVRLFNSMANCGVKPNMKHYGSV 353
           +L+ QM   G   D  +Y   L AC  + L    +  G  +   +   G + N+    ++
Sbjct: 165 DLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTL 224

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM-GSNN 412
           +D+  + G +  A  +  ++    + V W  ++ AC    ++ M  +   +L+     N+
Sbjct: 225 LDVYAKFGSVSYANSVFCAMPT-KNFVSWSAMI-ACFAKNEMPMKALELFQLMMFEACNS 282

Query: 413 CGDFVLLSNLYAA 425
             + V + N+  A
Sbjct: 283 VPNSVTMVNMLQA 295


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/542 (37%), Positives = 338/542 (62%), Gaps = 4/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           + + ++  YA     +L  A  LF ++   +   + +++ G   +  P  A+L Y++M  
Sbjct: 116 IETTLLNMYA--ACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEE 173

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D +T +  + ACA +  L   +++HSH+        A+LG+ L+++YAK G++ +
Sbjct: 174 DGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKT 233

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A++VFD++  +D+ +W+ALI G  + N ++EA+ LF+ +      +PNEVT+L  ++AC 
Sbjct: 234 ARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACA 293

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            LG  + G  +H+YI   +   +V + N++IDM++KCG +D A  +FD++   K L++WN
Sbjct: 294 QLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMS-YKDLISWN 352

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-AN 340
           +MV   A+HG G  AL  F  M    ++PD+++++  L AC+HAGLV +G +LF  + A 
Sbjct: 353 SMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEAL 412

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            GV+   +HYG +VDLL RAG L EA + ++ + +  D  +W ++LGAC++Y ++E+ E 
Sbjct: 413 YGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEE 472

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A+R L+E+   N G ++LLSN+YA  + W++V +VR+ M  + ++K PG S + +  + H
Sbjct: 473 AARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAH 532

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F   D SH +  EI   L ++  K+K  GY A TS VL +I + +KE ++  HSEKLA+
Sbjct: 533 SFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLAL 592

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
            +GL+ +     I + KNLR+C DCH +IKL+SK+Y R+I +RDR RFH FKDG+CSC+D
Sbjct: 593 CYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRD 652

Query: 581 YW 582
           YW
Sbjct: 653 YW 654



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 186/338 (55%), Gaps = 5/338 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALK 116
           + YA+++F          +N++LR   +S+ P  A+  Y +ML R  +  D  T    LK
Sbjct: 28  VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            CA +L       +H  V+++   +D  + TTLL++YA  G++ SA+ +F+ MG R+   
Sbjct: 88  GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W ++I+G  + +  +EA+ L+K+M+ +G F P+EVT+   ++AC  L     G K+H +I
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDG-FSPDEVTMATLVSACAELKDLGVGMKLHSHI 206

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           RE  + +  V+ +A+++MYAKCG L  A +VFD +   K +  W+ ++  +  +     A
Sbjct: 207 REMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLS-DKDVYAWSALIFGYVKNNRSTEA 265

Query: 297 LELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           L+LF ++ G + ++P++V+ LA + AC   G ++ G  + + +       ++    S++D
Sbjct: 266 LQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLID 325

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +  + G +  A  I  S+S   D++ W +++    L+G
Sbjct: 326 MFSKCGDIDAAKRIFDSMSY-KDLISWNSMVNGLALHG 362


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/508 (41%), Positives = 311/508 (61%), Gaps = 4/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +  ++ GLA + +   AV  YRQM +     D +     ++AC  +      L IH +++
Sbjct: 174 WTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMI 233

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R   + D ++ T+L+D+YAK G +  A  VF  M  +++ SW+ALI+G AQ   A  A+ 
Sbjct: 234 RKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQ 293

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           L   M+  G +KP+ V+++  L AC  +G  K G  +H YI   RL  + V   AVIDMY
Sbjct: 294 LVVDMQSFG-YKPDSVSLVSVLLACSQVGFLKLGKSVHGYI-VRRLHFDCVSSTAVIDMY 351

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCG L  A  VFD I  R S ++WN ++ ++ +HG G  AL LF QM    VKPD  ++
Sbjct: 352 SKCGSLSFARTVFDQISFRDS-ISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATF 410

Query: 316 LAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            + L A +H+GLV+ G   F+ M N   ++P+ KHY  +VDLL RAGR++EA ++++S+ 
Sbjct: 411 ASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMI 470

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
               + +W  LL  C  +G   + E+A++K++E+  ++ G + L+SN +A   RWD+V  
Sbjct: 471 TEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAE 530

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VRK MK   +KKVPG+S +EV G +H F   DKSH ++ EI + L ++ +++K  GY   
Sbjct: 531 VRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPK 590

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T  VLH++ EE KE  LC HSE+LA+AFGL++T   T + + KNLR+C DCH+  K ISK
Sbjct: 591 TEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISK 650

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + NREI+VRD  RFH FKDG CSC DYW
Sbjct: 651 IVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 191/377 (50%), Gaps = 8/377 (2%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           I ++ A +  TG F        +K+I+ YA   L  +  A  +F +      + +NA++ 
Sbjct: 23  IAKIHALMILTGIFGHG--NSNAKLIQSYA--RLGHIESARQVFDKSPQCGVDAWNAMII 78

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
             +       A+  Y +M     R D+ T +  LKAC R L L    +     +  G+  
Sbjct: 79  AYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGD 138

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  +G  +L++YAK G++  A +VFD+MG RD+  W  +I GLAQ   A EAVD++++M 
Sbjct: 139 DVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMH 198

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            + V + + V +LG + AC  LG  K G  IH Y+  + + M+V+V  +++DMYAK G L
Sbjct: 199 KKRV-EGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHL 257

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           + A  VF  +   K++++W+ ++  FA +G    AL+L   M   G KPD VS ++ L A
Sbjct: 258 ELASCVFRRM-LYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLA 316

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C+  G +  G  +   +    +  +     +V+D+  + G L  A  +   +S   D + 
Sbjct: 317 CSQVGFLKLGKSVHGYIVR-RLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISF-RDSIS 374

Query: 382 WQTLLGACQLYGDVEMA 398
           W  ++ +  ++G  E A
Sbjct: 375 WNAIIASYGIHGSGEEA 391


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/542 (37%), Positives = 339/542 (62%), Gaps = 4/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           + + ++  YA     +L  A  LF ++   +   + +++ G   +  P  A+L Y++M  
Sbjct: 116 IETTLLNMYA--ACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEE 173

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D +T +  + ACA +  L   +++HSH+        A+LG+ L+++YAK G++ +
Sbjct: 174 DGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKT 233

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A++VFD++  +D+ +W+ALI G  + N ++EA+ LF+ +      +PNEVT+L  ++AC 
Sbjct: 234 ARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACA 293

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            LG  + G  +H+YI   +   +V + N++IDM++KCG +D A  +FD++   K L++WN
Sbjct: 294 QLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMS-YKDLISWN 352

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-AN 340
           +MV  FA+HG G  AL  F  M    ++PD+++++  L AC+HAGLV +G +LF  + A 
Sbjct: 353 SMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEAL 412

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            GV+   +HYG +VDLL RAG L EA + ++ + +  D  +W ++LGAC++Y ++E+ E 
Sbjct: 413 YGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEE 472

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A+R L+++   N G ++LLSN+YA  + W++V +VR+ M  + ++K PG S + +  + H
Sbjct: 473 AARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAH 532

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F   D SH +  EI   L ++  K+K  GY A TS VL +I + +KE ++  HSEKLA+
Sbjct: 533 SFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLAL 592

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
            +GL+ +     I + KNLR+C DCH +IKL+SK+Y R+I +RDR RFH FKDG+CSC+D
Sbjct: 593 CYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRD 652

Query: 581 YW 582
           YW
Sbjct: 653 YW 654



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 186/338 (55%), Gaps = 5/338 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALK 116
           + YA+++F          +N++LR   +S+ P  A+  Y +ML R  +  D  T    LK
Sbjct: 28  VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            CA +L       +H  V+++   +D  + TTLL++YA  G++ SA+ +F+ MG R+   
Sbjct: 88  GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W ++I+G  + +  +EA+ L+K+M+ +G F P+EVT+   ++AC  L     G K+H +I
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDG-FSPDEVTMATLVSACAELKDLGVGMKLHSHI 206

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           RE  + +  V+ +A+++MYAKCG L  A +VFD +   K +  W+ ++  +  +     A
Sbjct: 207 REMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLS-DKDVYAWSALIFGYVKNNRSTEA 265

Query: 297 LELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           L+LF ++ G + ++P++V+ LA + AC   G ++ G  + + +       ++    S++D
Sbjct: 266 LQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLID 325

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +  + G +  A  I  S+S   D++ W +++    L+G
Sbjct: 326 MFSKCGDIDAAKRIFDSMSY-KDLISWNSMVNGFALHG 362


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/563 (40%), Positives = 333/563 (59%), Gaps = 8/563 (1%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           HI +L A L  TG     L  +R  ++   A +P + L+YA ++F  I  P T  FN ++
Sbjct: 3   HIYKLHARLLKTGHHNHPL-ALRRLLLSCAASAPAS-LSYARSIFDLIAFPDTFAFNTII 60

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           R  A SS   +  L+ +  + G    D  T  F LKACAR   L   L +HS + + GF 
Sbjct: 61  RAHADSSPSFSLSLFSKMAMAGV-SPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFD 116

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
           +D  +   L+  Y   G +  A KVF+EM  RD+ SW+++IA  A+     EA+ LF+RM
Sbjct: 117 SDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRM 176

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           ++ G  KP+EV VL  ++A   LG  + G  I  +I    L+  V +  A++DM+++CG 
Sbjct: 177 QLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGC 236

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           ++++  VFD +   ++++TW  ++   AVHG    AL +F +M   G +PD V++   L 
Sbjct: 237 IEESMRVFDEMG-ERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLV 295

Query: 321 ACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC+H GLV +G  +F S+ N  G++P  +HYG +VDLLGRAG L EAC  V  + +  + 
Sbjct: 296 ACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNS 355

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           ++W+TLLGAC  +  +E+AE    K+ E+ S + GD+VLLSN+Y    RW +   VR +M
Sbjct: 356 IIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSM 415

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           + + + K PG S I V  +IH+F   D +H ++  I E L  ++  +K  GY    S VL
Sbjct: 416 REKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVL 475

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
            DI EEEKE+ L YHSEKLAVAF L+   ++ +I+V KNLRIC DCH  +K  S V+ RE
Sbjct: 476 FDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFERE 535

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           II+RDR RFH F  G+CSC+DYW
Sbjct: 536 IIIRDRNRFHHFSKGSCSCRDYW 558


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/573 (36%), Positives = 341/573 (59%), Gaps = 36/573 (6%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           +++ +I  YA      +  A  LF ++  P    +N ++ G   +    +A+  +  M  
Sbjct: 158 IQTGLIAMYA--SCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRS 215

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA------- 154
              + D++     L AC     L     IH  V  +G+  D+ L T L+++YA       
Sbjct: 216 SDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDL 275

Query: 155 ------------------------KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
                                   K+G +  A+ +FD+M  RD+  W+A+I+G A+ +  
Sbjct: 276 ARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQP 335

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
            EA+ LF  M ++    P+++T+L  ++AC H+GA  + + IH Y+        + V NA
Sbjct: 336 QEALKLFDEM-LQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNA 394

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           +IDMYAKCG L KA EVF+N+  RK++++W++M+ AFA+HG+   A++LF +M    ++P
Sbjct: 395 LIDMYAKCGNLVKAREVFENMP-RKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEP 453

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           + V+++  L AC HAGLV++G +LF+SM N  G+ P  +HYG +VDL  RA  L++A ++
Sbjct: 454 NGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIEL 513

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW 429
           ++++    ++++W +L+ ACQ++G+ E+ E A+++L+E+  ++ G  V+LSN+YA  +RW
Sbjct: 514 IETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRW 573

Query: 430 DDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEY 489
           +DVG +RK+M  + + K    S IE+   +H F  +D+ H +  EIYEKLDE++ K+K  
Sbjct: 574 NDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLV 633

Query: 490 GYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVI 549
           GY   TS +L D+ EE+K+  + +HSEKLAV +GLIS    + I++ KNLRIC DCH  +
Sbjct: 634 GYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFM 693

Query: 550 KLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KL+SKVY  EI+VRDR RFH    G CSC+DYW
Sbjct: 694 KLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 186/392 (47%), Gaps = 34/392 (8%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACARVL 122
           +F QI  P T+  N +LR L+ SS P   +  Y  +    +   D  +    LKA ++V 
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           A    L+IH    + GF+ D  + T L+ +YA    I+ A+ +FD+M   D  +WN +I 
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIID 195

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G  Q     +A+ LF+ M+   + KP+ V +   L+ACGH G    G  IHE++++    
Sbjct: 196 GYCQNGHYDDALRLFEDMRSSDM-KPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYA 254

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR---------------------------- 274
           ++  +  A+I+MYA CG +D A +++D +  +                            
Sbjct: 255 IDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQM 314

Query: 275 --KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             + LV W+ M+  +A       AL+LF++M +    PD ++ L+ + AC+H G +    
Sbjct: 315 IERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQAN 374

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            +   +   G    +    +++D+  + G L +A ++ +++    +++ W +++ A  ++
Sbjct: 375 WIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPR-KNVISWSSMINAFAMH 433

Query: 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           G+ + A    R++ E+     G    +  LYA
Sbjct: 434 GNADSAIKLFRRMKEVNIEPNG-VTFIGVLYA 464



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 136/260 (52%), Gaps = 4/260 (1%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
             SK   V + ++  YA   L  +  A  +F Q+       ++A++ G A S +P  A+ 
Sbjct: 283 LSSKHLIVSTAMLSGYA--KLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALK 340

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
            + +ML+     D +T    + AC+ V AL +   IH++V R GF     +   L+D+YA
Sbjct: 341 LFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYA 400

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G +V A++VF+ M  +++ SW+++I   A    A  A+ LF+RMK E   +PN VT +
Sbjct: 401 KCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMK-EVNIEPNGVTFI 459

Query: 215 GALAACGHLGAWKEGDKI-HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           G L ACGH G  +EG+K+    I E  +         ++D+Y +   L KA E+ + +  
Sbjct: 460 GVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPF 519

Query: 274 RKSLVTWNTMVMAFAVHGDG 293
             +++ W +++ A  VHG+ 
Sbjct: 520 APNVIIWGSLMSACQVHGEA 539



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 106/253 (41%), Gaps = 8/253 (3%)

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N L+  L++ +   + + L+  ++    F  +  +    L A   + A+  G +IH    
Sbjct: 89  NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +     +  +   +I MYA C  +  A  +FD + C    V WN ++  +  +G    AL
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKM-CHPDAVAWNMIIDGYCQNGHYDDAL 207

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
            LFE M  + +KPD V     L AC HAG +  G  +   + + G   +     +++++ 
Sbjct: 208 RLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMY 267

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
              G +  A  I   +S    +V    L G  +L G V+ A     +++E       D V
Sbjct: 268 ANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKL-GMVKDARFIFDQMIER------DLV 320

Query: 418 LLSNLYAAYERWD 430
             S + + Y   D
Sbjct: 321 CWSAMISGYAESD 333


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/561 (38%), Positives = 341/561 (60%), Gaps = 8/561 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFP-VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           +Q+ AH+  +G    ++ P V   +I FY+ + L  L+    +F +    S+  +++V+ 
Sbjct: 74  QQIHAHIIKSGL---QVIPLVCHYLINFYSKTQLPLLS--SQVFEESERKSSTTWSSVIS 128

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
             A + +P  A+ ++ +M+  +   D      A KACA +        +H  V++ G+  
Sbjct: 129 SFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDV 188

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  +G++L+D+YAK G+I  A+ VFDEM  R++ SW+ +I G  Q     EA+ LFK   
Sbjct: 189 DVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEAL 248

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           +EG+   N+ T+   +  CG     + G +IH    +   D++  V +++I +Y+KCGL+
Sbjct: 249 LEGL-DVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLI 307

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           + A+ VFD +   K+L  WN M++A A H     A +LF +M  AG++P+ +++L  L A
Sbjct: 308 EGAYRVFDEVPI-KNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYA 366

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C+HAGLV++G + F  M    ++P  +HY S+VDLLGRAG+LQEA  ++K +       +
Sbjct: 367 CSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESV 426

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W   +  C+++G+ ++A  A+ K+ E+G+ + G  V+LSN YAA  R++D  + RK +++
Sbjct: 427 WGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRD 486

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           R VKK  G S+IE G  +HKF   D+ HV+ +EIY+KL+++  +++  GY A TS VL +
Sbjct: 487 RGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLRE 546

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           +G EEK   + YHSE+LA+AFGLIS      I++ KNLR+C DCH+ IK ISK+  R II
Sbjct: 547 VGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVII 606

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRD  RFHRF+DG CSC DYW
Sbjct: 607 VRDNNRFHRFEDGKCSCADYW 627



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 138/280 (49%), Gaps = 3/280 (1%)

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
            R  +L +  QIH+H+++ G     L+   L++ Y+K    + + +VF+E   +   +W+
Sbjct: 65  TRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWS 124

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ++I+  AQ      A+  F RM  E +  P++     A  AC  LG    G  +H  + +
Sbjct: 125 SVISSFAQNEEPVLAIQYFCRMIGENLC-PDDHIFPSATKACAILGRCDVGKSVHCLVIK 183

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
              D++V V ++++DMYAKCG + +A  VFD +  R ++V+W+ M+  +   G+   A+ 
Sbjct: 184 TGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHR-NVVSWSGMIYGYTQLGEHEEAMR 242

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LF++    G+  +D +  + +  C  A L++ G ++           +     S++ L  
Sbjct: 243 LFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYS 302

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           + G ++ A  +   V +  ++ +W  +L AC  +   + A
Sbjct: 303 KCGLIEGAYRVFDEVPI-KNLGMWNAMLIACAQHAHTKEA 341


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/520 (37%), Positives = 314/520 (60%), Gaps = 3/520 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F  +       +N ++ G A +      +   R+M   + + D+ T S  L   A  + 
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           +    +IH   +R G  AD  + ++L+D+YAK   +  + +VF  +  RD  SWN++IAG
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAG 314

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q  L  E +  F++M M  + KP   +    + AC HL     G ++H YI     D 
Sbjct: 315 CVQNGLFDEGLRFFRQMLMAKI-KPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDE 373

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N+ + ++++DMYAKCG +  A ++FD ++ R  +V+W  M+M  A+HG  P A+ELFEQM
Sbjct: 374 NIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQAPDAIELFEQM 432

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGR 362
              G+KP+ V+++A L AC+H GLVD+  + FNSM  + G+ P ++HY +V DLLGRAGR
Sbjct: 433 ETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGR 492

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L+EA D +  + +G    +W TLL AC+++ +++MAE  + +++E+  NN G ++LL+N+
Sbjct: 493 LEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANI 552

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           Y+A  RW +  + R +M+   ++K P  S+IEV   ++ F   D+SH  + +I E ++ +
Sbjct: 553 YSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVL 612

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
           +  +++ GY   TS V HD+ EE+K+  +C HSE+LA+ FG+I+T    +I+V KNLR+C
Sbjct: 613 VELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVC 672

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH   K ISK+  REI+VRD  RFH FK+G CSC DYW
Sbjct: 673 TDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 163/373 (43%), Gaps = 35/373 (9%)

Query: 53  SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           S +N L  +  LF  I+ P    + +V+R       P  ++  +  ML      D     
Sbjct: 51  SHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFP 110

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV-------------GEI 159
             LK+CA ++ L     +H +++R G   D   G  L+++Y+K+             GE+
Sbjct: 111 SVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEV 170

Query: 160 V-------------------SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
                               S +K+F+ M  +D+ SWN +IAG A+  L  E + + + M
Sbjct: 171 FDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREM 230

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
               + KP+  T+   L           G +IH     + LD ++ V +++IDMYAKC  
Sbjct: 231 GGANL-KPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTR 289

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +  +  VF  +  R   ++WN+++     +G     L  F QM  A +KP   S+ + + 
Sbjct: 290 VADSCRVFTLLTERDG-ISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           AC H   +  G +L   +   G   N+    S+VD+  + G ++ A  I   + +  DMV
Sbjct: 349 ACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL-RDMV 407

Query: 381 LWQTLLGACQLYG 393
            W  ++  C L+G
Sbjct: 408 SWTAMIMGCALHG 420


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/567 (38%), Positives = 340/567 (59%), Gaps = 14/567 (2%)

Query: 14  NGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPST 73
           NG + H+H+ +            S +F V + +I  Y  S    L  A  +F Q+     
Sbjct: 240 NGVLIHLHVLK--------HGLDSDVF-VSNALINMY--SKFGRLQDAQMVFDQMEVRDL 288

Query: 74  NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH 133
             +N+++     ++ P+ A+ +++ M  G  R D LT        +++     +  I   
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGF 348

Query: 134 VLRHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
           V+R  +L  D ++G  L+++YAK+G +  A  VFD++  +D  SWN L+ G  Q  LASE
Sbjct: 349 VIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASE 408

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A+D +  M+      PN+ T +  + A  H+GA ++G KIH  + +  L ++V V   +I
Sbjct: 409 AIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLI 468

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
           D+Y KCG L+ A  +F  I  R + V WN ++ +  +HG G  AL+LF+ M    VK D 
Sbjct: 469 DLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADH 527

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
           +++++ L AC+H+GLVD+G + F+ M    G+KP++KHYG +VDLLGRAG L++A ++V+
Sbjct: 528 ITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVR 587

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDD 431
           ++ +  D  +W  LL AC++YG+ E+  +AS +L+E+ S N G +VLLSN+YA  E+W+ 
Sbjct: 588 NMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEG 647

Query: 432 VGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGY 491
           V +VR   ++R ++K PG+S + VG     F+T +++H K+ EIY++L  +  K+K  GY
Sbjct: 648 VIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGY 707

Query: 492 AAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKL 551
               S V  DI E+EKE  L  HSE+LA+AFG+IST   + I++FKNLR+C DCH+  K 
Sbjct: 708 VPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKY 767

Query: 552 ISKVYNREIIVRDRVRFHRFKDGACSC 578
           IS++  REI+VRD  RFH FKDG CSC
Sbjct: 768 ISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 188/366 (51%), Gaps = 8/366 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F+  +F V + ++  Y  S    L  AH +F  +       +NA++ G   +     A+ 
Sbjct: 152 FEDDVF-VAASLVHLY--SRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALG 208

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
              +M     + D +T +  L  CA+   +   + IH HVL+HG  +D  +   L+++Y+
Sbjct: 209 VLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYS 268

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G +  A+ VFD+M VRD+ SWN++IA   Q N  S A+  FK M++ G+ +P+ +TV+
Sbjct: 269 KFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGI-RPDLLTVV 327

Query: 215 GALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
              +    L   +    I  + IR E LD +VV+ NA+++MYAK G ++ A  VFD +  
Sbjct: 328 SLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP- 386

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDDVSYLAALCACNHAGLVDDGV 332
           RK  ++WNT+V  +  +G    A++ +  M       P+  ++++ + A +H G +  G+
Sbjct: 387 RKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGM 446

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
           ++   +    +  ++     ++DL G+ GRL++A  +   +   T  V W  ++ +  ++
Sbjct: 447 KIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTS-VPWNAIIASLGIH 505

Query: 393 GDVEMA 398
           G  E A
Sbjct: 506 GRGEEA 511



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 161/314 (51%), Gaps = 18/314 (5%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           A+ NAL   C +  A      K+L A L   G+ Q+ +  + +K+I  Y      +++ +
Sbjct: 23  ADFNALFNSCVNVNAT-----KKLHALLLVFGKSQNIV--LSTKLINLYVTH--GDISLS 73

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSK---PTNAVLWYRQMLRGSH-RSDALTCSFALKA 117
            + F  I+  +   +N+++       K     N V     M  G H R D  T    LKA
Sbjct: 74  RSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKA 133

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C   ++L +  ++H  V + GF  D  +  +L+ +Y++ G +  A KVF +M V+D+ SW
Sbjct: 134 C---VSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSW 190

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NA+I+G  Q   A+ A+ +  RMK EGV K + +TV   L  C        G  IH ++ 
Sbjct: 191 NAMISGFCQNGNAAGALGVLNRMKGEGV-KMDTITVASILPVCAQSDDVINGVLIHLHVL 249

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  LD +V V NA+I+MY+K G L  A  VFD ++ R  LV+WN+++ A+  + D   AL
Sbjct: 250 KHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTAL 308

Query: 298 ELFEQMGRAGVKPD 311
             F+ M   G++PD
Sbjct: 309 RFFKGMQLGGIRPD 322


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/592 (37%), Positives = 351/592 (59%), Gaps = 38/592 (6%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K L  H    G F S LF V+   I  ++L  L +LA    +F   +A     +N +L G
Sbjct: 127 KVLLNHAVKHG-FDSNLF-VQKAFIHMFSLCRLVDLA--RKVFDMGDAWEVVTWNIMLSG 182

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
                +   + + + +M +     +++T    L AC+++  L     I+ ++       +
Sbjct: 183 YNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERN 242

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA---QGNLAS-------- 191
            +L   L+D++A  GE+  A+ VFD M  RD+ SW +++ G A   Q +LA         
Sbjct: 243 LILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPE 302

Query: 192 --------------------EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
                               EA+ LF+ M+M  V KP+E T++  L AC HLGA + G+ 
Sbjct: 303 RDYVSWTAMIDGYLRMNRFIEALALFREMQMSNV-KPDEFTMVSILTACAHLGALELGEW 361

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +  YI +  +  +  V NA+IDMY KCG + KA +VF  +   K   TW  M++  A++G
Sbjct: 362 VKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMH-HKDKFTWTAMIVGLAING 420

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHY 350
            G  AL +F  M  A + PD+++Y+  LCAC HAG+V+ G   F SM    G+KPN+ HY
Sbjct: 421 HGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHY 480

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
           G +VDLLGRAGRL+EA +++ ++ +  + ++W +LLGAC+++ +V++AE+A+++++E+  
Sbjct: 481 GCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEP 540

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
            N   +VLL N+YAA +RW+++ +VRK M  R +KK PG S +E+ G +++F   D+SH 
Sbjct: 541 ENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHP 600

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           + +EIY KL+ +M  + + GY+  TS V  D+GEE+KE AL  HSEKLA+A+ LIS+   
Sbjct: 601 QSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPG 660

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +I++ KNLR+C DCH + KL+S+ YNRE+IVRD+ RFH F+ G+CSC ++W
Sbjct: 661 ITIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 203/433 (46%), Gaps = 41/433 (9%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL+KC S        +KQ+ +H    G     LF  + ++I F       ++ YA  +F
Sbjct: 12  SLLEKCKS-----MYQLKQIHSHTIKMGLSSDPLF--QKRVIAFCCAHESGKMIYARQVF 64

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             I  P+   +N +++G +  + P N V  Y  ML  + + D  T  F LK   R +AL 
Sbjct: 65  DAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQ 124

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
               + +H ++HGF ++  +    + +++    +  A+KVFD     ++ +WN +++G  
Sbjct: 125 YGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYN 184

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           +     ++  LF  M+  GV  PN VT++  L+AC  L   + G  I++YI    ++ N+
Sbjct: 185 RVKQFKKSKMLFIEMEKRGV-SPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNL 243

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG-------------- 291
           ++ N +IDM+A CG +D+A  VFDN+K R  +++W ++V  FA  G              
Sbjct: 244 ILENVLIDMFAACGEMDEAQSVFDNMKNR-DVISWTSIVTGFANIGQIDLARKYFDQIPE 302

Query: 292 ----------DG-------PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
                     DG         AL LF +M  + VKPD+ + ++ L AC H G ++ G  +
Sbjct: 303 RDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWV 362

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
              +    +K +     +++D+  + G + +A  + K +    D   W  ++    + G 
Sbjct: 363 KTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMH-HKDKFTWTAMIVGLAINGH 421

Query: 395 VEMAEIASRKLVE 407
            E A      ++E
Sbjct: 422 GEEALAMFSNMIE 434


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/532 (40%), Positives = 331/532 (62%), Gaps = 9/532 (1%)

Query: 58  LAYAHALFRQINAPSTND-FNAVLRGLAHSSKPTN-----AVLWYRQMLRGSHRSDALTC 111
           LAYA  +F ++  P+    +N +LRG A SS P++     AV  + +ML      D  T 
Sbjct: 77  LAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTF 136

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
              LKACA   A  E  Q H+  ++ G      +  TL+++YA+ G+  +A+ +F     
Sbjct: 137 VSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDG 196

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
             + S+NA+IA   + +   EA+ LF+ M+ +G+ KP  VTV+  L+AC  LGA + G  
Sbjct: 197 GCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGL-KPTSVTVISVLSACALLGALELGRW 255

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +H+Y+R+  L   V V  A+IDMYAKCG L+ A +VF  ++  K    W+ M++A+A HG
Sbjct: 256 VHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMES-KDRQAWSVMIVAYANHG 314

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
            G  A+ LFE+M + G+KPDD+++L  L AC+H+GLV +G++ F+ M + G+ P +KHYG
Sbjct: 315 YGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMKDHGIVPGIKHYG 374

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            V DLL R+G+L+ A   +  + +    +LW+TLL AC  +GD E+ +    +++++  +
Sbjct: 375 CVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFERILKLDDS 434

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           + GD+V+ SNL A    W+++  VRK M  + V KVPG S IE+   +H+FF  D  H K
Sbjct: 435 HGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDGRHPK 494

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEA 530
            +E  + +DE++ ++K  GY   TS V H ++GEEEK  +L YHSEKLA+AFGL++T+  
Sbjct: 495 SQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPG 554

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +++V KNLR+C DCH + KL+S V+NR II+RD  RFH F++G CSC DYW
Sbjct: 555 ATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 326/527 (61%), Gaps = 4/527 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALK 116
           L YA  +F  +   +   ++A++ G   S     A+  + QM L+ +     +T    L+
Sbjct: 261 LLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLR 320

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA++  L    ++H ++++ G + D LLG TLL +YAK G I  A + FD M  +D  S
Sbjct: 321 ACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVS 380

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           ++A+++G  Q   A+ A+ +F+ M++ G+  P+  T+LG L AC HL A + G   H Y+
Sbjct: 381 FSAIVSGCVQNGNAAVALSIFRMMQLSGI-DPDLTTMLGVLPACSHLAALQHGFCSHGYL 439

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
                  + ++CNA+IDMY+KCG +  A EVF+ +  R  +V+WN M++ + +HG G  A
Sbjct: 440 IVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEA 498

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVD 355
           L LF  +   G+KPDD++++  L +C+H+GLV +G   F++M+ +  + P M+H   +VD
Sbjct: 499 LGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVD 558

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           +LGRAG + EA   ++++    D+ +W  LL AC+++ ++E+ E  S+K+  +G  + G+
Sbjct: 559 ILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGN 618

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           FVLLSN+Y+A  RWDD   +R   K+  +KK+PG S+IE+ G++H F   D+SH++  +I
Sbjct: 619 FVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 678

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
             KL+E++ ++K  GY A  S V  D+ EEEKE  L YHSEKLA+AFG+++      I V
Sbjct: 679 NRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILV 738

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH  IK ++ +  REI VRD  RFH FK+G C+C D+W
Sbjct: 739 TKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 171/344 (49%), Gaps = 4/344 (1%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           N++  A  LF +I  PS   +N ++R  A +     A+  Y  ML    R +  T  F L
Sbjct: 57  NQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVL 116

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           KAC+ +LA+ + ++IHSH    G  +D  + T L+D YAK G +V A+++F  M  RD+ 
Sbjct: 117 KACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVV 176

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           +WNA+IAG +   L  +AV L  +M+ EG+  PN  T++G L   G   A   G  +H Y
Sbjct: 177 AWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC-PNSSTIVGVLPTVGEAKALGHGKALHGY 235

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
                 D  VVV   ++DMYAKC  L  A ++FD +  R   V+W+ M+  +        
Sbjct: 236 CVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNE-VSWSAMIGGYVXSDCMKE 294

Query: 296 ALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
           ALELF+QM  +  + P  V+  + L AC     +  G +L   +   G   ++    +++
Sbjct: 295 ALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLL 354

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +  + G + +A      ++   D V +  ++  C   G+  +A
Sbjct: 355 SMYAKCGVIDDAIRFFDXMN-PKDSVSFSAIVSGCVQNGNAAVA 397



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 181/370 (48%), Gaps = 6/370 (1%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           ++ +H    G  +S +F V + +++FYA   +  L  A  LF  ++      +NA++ G 
Sbjct: 130 EIHSHAKMFG-LESDVF-VCTALVDFYAKCGI--LVEAQRLFSSMSHRDVVAWNAMIAGC 185

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
           +      +AV    QM       ++ T    L       AL     +H + +R  F    
Sbjct: 186 SLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGV 245

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
           ++GT LLD+YAK   ++ A+K+FD MGVR+  SW+A+I G    +   EA++LF +M ++
Sbjct: 246 VVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILK 305

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
               P  VT+   L AC  L     G K+H YI +    +++++ N ++ MYAKCG++D 
Sbjct: 306 DAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDD 365

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A   FD +  + S V+++ +V     +G+   AL +F  M  +G+ PD  + L  L AC+
Sbjct: 366 AIRFFDXMNPKDS-VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACS 424

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
           H   +  G      +   G   +     +++D+  + G++  A ++   +    D+V W 
Sbjct: 425 HLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDR-HDIVSWN 483

Query: 384 TLLGACQLYG 393
            ++    ++G
Sbjct: 484 AMIIGYGIHG 493



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 2/180 (1%)

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           L  L AC    +  E  KIH++  +   + +  V + +  +Y  C  +  A  +FD I  
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP- 70

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
             S++ WN ++ A+A +G    A++L+  M   GV+P+  +Y   L AC+    ++DGV 
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + +     G++ ++    ++VD   + G L EA  +  S+S   D+V W  ++  C LYG
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH-RDVVAWNAMIAGCSLYG 189


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/432 (44%), Positives = 289/432 (66%), Gaps = 2/432 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           +T++  YA+VG +  A+++F+ M +R++ SWNA+IAG AQ    ++A++LF++M+ EG  
Sbjct: 228 STMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGL 287

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            PN+VT++  L+AC HLGA   G  IH +IR  ++++ + + NA+ DMYAKCG + +A  
Sbjct: 288 APNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKG 347

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF  +  R  +++W+ ++M  A++G    A   F +M   G++P+D+S++  L AC HAG
Sbjct: 348 VFHEMHER-DVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAG 406

Query: 327 LVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LVD G+  F+ M    G+ P ++HYG VVDLL RAGRL +A  ++ S+ M  ++++W  L
Sbjct: 407 LVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGAL 466

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LG C++Y D E  E    +++E+ SN+ G  V L+N+YA+  R DD    R  M++    
Sbjct: 467 LGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSM 526

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K PG S+IE+   +++FF  D SH +   IY  + E+ +K+K  GY   T  V+H+I EE
Sbjct: 527 KTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEE 586

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE+AL  HSEKLA+AFGLI+TSE T+I++ KNLR+C DCHD IK+ISK+  REI+VRDR
Sbjct: 587 EKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDR 646

Query: 566 VRFHRFKDGACS 577
            RFH FKDG CS
Sbjct: 647 SRFHHFKDGKCS 658



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 5/255 (1%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RG 102
           S +I  YA   +  L  A  LF  +   +   +NA++ G A + K  +A+  +RQM   G
Sbjct: 228 STMISGYA--RVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEG 285

Query: 103 SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA 162
               + +T    L ACA + AL     IH  + R+       LG  L D+YAK G ++ A
Sbjct: 286 GLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEA 345

Query: 163 KKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
           K VF EM  RD+ SW+ +I GLA    A+EA + F  M  +G+ +PN+++ +G L AC H
Sbjct: 346 KGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGL-EPNDISFMGLLTACTH 404

Query: 223 LGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            G   +G +  + + +   +   +     V+D+ ++ G LD+A  + +++  + +++ W 
Sbjct: 405 AGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWG 464

Query: 282 TMVMAFAVHGDGPRA 296
            ++    ++ D  R 
Sbjct: 465 ALLGGCRIYKDAERG 479



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/343 (20%), Positives = 140/343 (40%), Gaps = 69/343 (20%)

Query: 118 CARVLALFETLQIHSHVLRHGF--LADALLGTTLLDVYAKVGEIVSAKKVFDE-MGVRDI 174
           CA  L++ +  +I + ++      +   ++    + V +  G +  +  +F+  +   +I
Sbjct: 31  CATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNI 90

Query: 175 ASWNALIAGLAQGNLASEAVDLFK-RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
            ++NAL+   +Q N     +  F  ++ +     P+E T    L AC  L    EG K+H
Sbjct: 91  FAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVH 150

Query: 234 EYIREERLDMNVVVCNAVIDMYAK-------------------------------CGLLD 262
            ++ +   + N+ V N+++D+Y K                                G++D
Sbjct: 151 CFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVD 210

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG------------------ 304
           KA  VFD +   K+LV+W+TM+  +A  G+   A +LFE M                   
Sbjct: 211 KARMVFDGM-MEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNE 269

Query: 305 --------------RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
                           G+ P+DV+ ++ L AC H G +D G  +   +    ++  +   
Sbjct: 270 KYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLG 329

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            ++ D+  + G + EA  +   +    D++ W  ++    +YG
Sbjct: 330 NALADMYAKCGCVLEAKGVFHEMH-ERDVISWSIIIMGLAMYG 371


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/549 (38%), Positives = 331/549 (60%), Gaps = 9/549 (1%)

Query: 36  QSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSK-PTNAVL 94
           Q+    +R+ ++   A +P   L+YA  +F +I +P T  +N ++R  +HS   P++++ 
Sbjct: 17  QNDPLSLRTLLLSCVAAAP-ESLSYARYVFSRIPSPDTIAYNTIIR--SHSRFFPSHSLF 73

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
           ++  M       D  T  F LKAC+R+      L +HS ++++G  +D  +   L+ VY 
Sbjct: 74  YFFSMRSNGIPLDNFTFPFVLKACSRLQI---NLHLHSLIVKYGLDSDIFVQNALICVYG 130

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
             G +  A KVFDEM  RD  SW+ +IA       ASEA+DLF++M++E    P+EVT+L
Sbjct: 131 YCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTML 190

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             ++A  HLG  + G  +  +I    L ++V +  A+IDM+++CG +D++  VF+ +  R
Sbjct: 191 SVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVR 250

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
            +++TW  ++    VHG    AL +F  M ++GV+PD V++   L AC+H GLV +G  +
Sbjct: 251 -NVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDI 309

Query: 335 FNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           F S+     + P + HYG +VD+LGRAG L EA D V+ + M  + ++W+TLLGAC  + 
Sbjct: 310 FESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHN 369

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           ++ +AE    K+ ++ S+  GD VLLSN+Y A  RW +   +R  M+ + + K PG S I
Sbjct: 370 NLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSI 429

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
            V   IH+F + D SH +  +I + L  I+  ++  GY   T  VLHDI EEE+E++L Y
Sbjct: 430 NVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSY 489

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEKLAVAF ++S  +  +I++ KNLRIC DCH  +K IS  + R+II+RDR RFH F+ 
Sbjct: 490 HSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEK 549

Query: 574 GACSCKDYW 582
           G CSC DYW
Sbjct: 550 GLCSCHDYW 558


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/642 (35%), Positives = 354/642 (55%), Gaps = 73/642 (11%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL  C S      IH   L+  L      +S  F +  K++   A+S  + L YA  LF
Sbjct: 10  SLLNICKSLTTFKQIHANVLKLGL------ESDPF-IAGKLLHHCAISLSDSLDYACRLF 62

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFALKACARVLAL 124
           R    P     N ++RGL  S +P +++L + +M R S    D+ + +F +KA A + ++
Sbjct: 63  RYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSV 122

Query: 125 FETLQIHSHVL-----RHGFLADALL---------------------------------- 145
              +Q+H   L      H F+   L+                                  
Sbjct: 123 RVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTAC 182

Query: 146 --------GTTLLDV---------------YAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
                   G  L D+               Y K GE+  A+++F EM ++D  SW+ +I 
Sbjct: 183 CRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIV 242

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G A      EA   F+ ++ +G+ +PNE ++ G L+AC   GA + G  +H +I +  L 
Sbjct: 243 GFAHNGYFEEAFSFFRELQRKGM-RPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLA 301

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
             V V NA++D Y+KCG +  A  VF+ I   +++V+W +M+ A A+HG G  A+ +F +
Sbjct: 302 WIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHK 361

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAG 361
           M  +G++PD++++++ L AC+HAGLV+ G   F+ M     ++P+++HYG +VDL GRAG
Sbjct: 362 MEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAG 421

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           +LQ+A + V  + +    ++W+TLLGAC ++GDV++AE    +L E+  NN  D VLLSN
Sbjct: 422 QLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSN 481

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
            YA   +W D   VR++M  + + K PG+S IEV  +++ F    K +    E Y+KL E
Sbjct: 482 AYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKE 541

Query: 482 IMFKIK-EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           I+ +++ E GY      VLHDI EEEKE ++  HSEKLAVAFG+    +  +I++ KNLR
Sbjct: 542 IIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLR 601

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ICRDCH V+KLIS++Y  EI+VRDR RFH FKDG CSC+DYW
Sbjct: 602 ICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/548 (38%), Positives = 334/548 (60%), Gaps = 5/548 (0%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F+S +F V++ ++  YA      +  A  +F  ++  +   + +++ G   +  P  A+ 
Sbjct: 200 FESDVF-VQNGLVALYA--KCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALR 256

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
            + QM + + + D +     L+A   V  L +   IH  V++ G   +  L  +L  +YA
Sbjct: 257 IFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYA 316

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G+++ A+  FD+M + ++  WNA+I+G A+    +EAV LF+ M  + + + + +TV 
Sbjct: 317 KCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNI-RTDSITVR 375

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
            A+ AC  +G+      + +YI +     +V V  A+IDM+AKCG +D A EVFD     
Sbjct: 376 SAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDR-TLD 434

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           K +V W+ M++ + +HG G  A++LF  M +AGV P+DV+++  L ACNH+GLV++G  L
Sbjct: 435 KDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWEL 494

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           F+SM   G++   +HY  VVDLLGR+G L EA D + ++ +   + +W  LLGAC++Y  
Sbjct: 495 FHSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRH 554

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           V + E A+ +L  +   N G +V LSNLYA+   WD V +VR  M+ + + K  G+S IE
Sbjct: 555 VTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIE 614

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYH 514
           + G +  F   DKSH +++EI+E+L+ +  ++KE G+      VLHD+ +EEKE  LC H
Sbjct: 615 INGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCNH 674

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SE+LA+A+GLIST+  T++++ KNLR C +CH   KLISK+ NREI+VRD  RFH FK+G
Sbjct: 675 SERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFKNG 734

Query: 575 ACSCKDYW 582
            CSC+DYW
Sbjct: 735 VCSCRDYW 742



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 186/374 (49%), Gaps = 9/374 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALS-PLNELAYAHALFRQINAPSTNDFNAV 79
           H+ Q+ A L  +G  +S        + +F   S  + E+ YA  +F +   PS   +NA+
Sbjct: 86  HLNQIHAQLVVSGLVESGFL-----VTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAI 140

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           +RG +  +   +A+  Y +M       D  T    LKAC+ V  L    ++H  + R GF
Sbjct: 141 IRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGF 200

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
            +D  +   L+ +YAK G +  A+ VF+ +  R+I SW ++I+G  Q  L  EA+ +F +
Sbjct: 201 ESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQ 260

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+   V KP+ + ++  L A   +   ++G  IH  + +  L+    +  ++  MYAKCG
Sbjct: 261 MRQRNV-KPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCG 319

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            +  A   FD ++   +++ WN M+  +A +G    A+ LF++M    ++ D ++  +A+
Sbjct: 320 QVMVARSFFDQMEI-PNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAI 378

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            AC   G +D    + + +     + ++    +++D+  + G +  A ++    ++  D+
Sbjct: 379 LACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDR-TLDKDV 437

Query: 380 VLWQTLLGACQLYG 393
           V+W  ++    L+G
Sbjct: 438 VVWSAMIVGYGLHG 451


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/464 (43%), Positives = 301/464 (64%), Gaps = 3/464 (0%)

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           A+ L + + +++    ++  F+    +    +D+YAK+G + SA KVF+ + V+D+ SWN
Sbjct: 198 AQALDVLDEMRLEG--IKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWN 255

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
            LI G AQ  LASEA++++K M+      PN+ T +  L A  H+GA ++G KIH  + +
Sbjct: 256 TLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIK 315

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L ++V V   +ID+Y KCG L  A  +F  +  ++S VTWN ++    +HG   + L+
Sbjct: 316 TNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLK 374

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LF +M   GVKPD V++++ L AC+H+G V++G   F  M   G+KP++KHYG +VDLLG
Sbjct: 375 LFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLG 434

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG L+ A D +K + +  D  +W  LLGAC+++G++E+ + AS +L E+ S N G +VL
Sbjct: 435 RAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVL 494

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YA   +W+ V +VR   + R +KK PG+S IEV   +  F+T ++SH K +EIYE+
Sbjct: 495 LSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEE 554

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L  +  K+K  GY    S VL D+ E+EKE+ L  HSE+LA+AFG+IST   + I++FKN
Sbjct: 555 LRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKN 614

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH+  K IS++  REI+VRD  RFH FKDG CSC DYW
Sbjct: 615 LRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 180/376 (47%), Gaps = 43/376 (11%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K L A L   G+ QS    + ++++  YA   L +++ +   F QI       +N+++  
Sbjct: 36  KCLHALLVVAGKVQSIF--ISTRLVNLYA--NLGDVSLSRCTFDQIPQKDVYAWNSMISA 91

Query: 83  LAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
             H+     A+  + Q+L  S  R D  T    LKAC     L +  +IH    + GF  
Sbjct: 92  YVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIHCWAFKLGFQW 148

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           +  +  +L+ +Y++ G    A+ +FD+M  RD+ SWNA+I+GL Q   A++A+D+   M+
Sbjct: 149 NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 208

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           +EG+ K N VTV+  L                                  +DMYAK GLL
Sbjct: 209 LEGI-KMNFVTVVSILP-------------------------------VFVDMYAKLGLL 236

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALC 320
           D A +VF+ I   K +++WNT++  +A +G    A+E+++ M     + P+  ++++ L 
Sbjct: 237 DSAHKVFEIIPV-KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 295

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           A  H G +  G+++   +    +  ++     ++D+ G+ GRL +A  +   V   +  V
Sbjct: 296 AYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-V 354

Query: 381 LWQTLLGACQLYGDVE 396
            W  ++    ++G  E
Sbjct: 355 TWNAIISCHGIHGHAE 370


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/592 (36%), Positives = 342/592 (57%), Gaps = 38/592 (6%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +QL  H+   G  Q  +F V + +++ Y L    +L  A  +F          +N ++  
Sbjct: 138 RQLHGHVLKHG-LQYNVF-VHTALVQMYLLC--GQLDTARGVFDVCPKADVITWNMIISA 193

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
                K   +   +  M         +T    L AC+++  L    ++HS+V      ++
Sbjct: 194 YNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESN 253

Query: 143 ALLGTTLLDVYA-------------------------------KVGEIVSAKKVFDEMGV 171
            +L   ++D+YA                                +GEI  A+  FD+M  
Sbjct: 254 LVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPE 313

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           +D  SW A+I G  + N   EA++LF+ M+   V KP+E T++  L AC HLGA + G+ 
Sbjct: 314 KDYVSWTAMIDGYIRSNRFKEALELFRNMQATNV-KPDEFTMVSVLTACAHLGALELGEW 372

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           I  YI   ++  ++ V NA+IDMY KCG +DKA  +F  +  R    TW  M++  AV+G
Sbjct: 373 IRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF-TWTAMIVGLAVNG 431

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHY 350
            G +AL++F  M +A + PD+++Y+  L AC H GLVD G + F  M +  G++PN+ HY
Sbjct: 432 HGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHY 491

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
           G +VDLL RAGRL+EA ++++++ +  + ++W  LL  C++Y + +MAE+  ++++E+  
Sbjct: 492 GCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEP 551

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
           +N   +VLL N+YAA +RW+D+  +R+ M ++ +KK PG S IE+ G +H+F   D+SH 
Sbjct: 552 DNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHP 611

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           + + I  KLD++   +K  GY+   S V  DI EE+KEN++  HSEKLA+AFGLI++   
Sbjct: 612 QTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPG 671

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +I++ KNLR+C DCH++ KL+SKVYNRE+IVRDR RFH FK G CSCKDYW
Sbjct: 672 VTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 198/426 (46%), Gaps = 41/426 (9%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           L +LL+ C S   +  +H + ++  L      Q++       ++ F       +  YA  
Sbjct: 21  LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNR-------VMTFCCTHEYGDFQYARR 73

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF +I  P+   +N ++RG +    P   V  Y +MLR   + D  T  F  K   R +A
Sbjct: 74  LFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIA 133

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L    Q+H HVL+HG   +  + T L+ +Y   G++ +A+ VFD     D+ +WN +I+ 
Sbjct: 134 LEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISA 193

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             +     E+  LF  M+ + V  P  VT++  L+AC  L   + G K+H Y++  +++ 
Sbjct: 194 YNKVGKFEESRRLFLVMEDKQVL-PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVES 252

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG------------ 291
           N+V+ NA+IDMYA CG +D A  +F ++  R  +++W T+V  F   G            
Sbjct: 253 NLVLENAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEIDVARNYFDKM 311

Query: 292 ------------DG-------PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
                       DG         ALELF  M    VKPD+ + ++ L AC H G ++ G 
Sbjct: 312 PEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGE 371

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            +   +    +K ++    +++D+  + G + +A  I + +S   D   W  ++    + 
Sbjct: 372 WIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ-RDKFTWTAMIVGLAVN 430

Query: 393 GDVEMA 398
           G  E A
Sbjct: 431 GHGEKA 436


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/508 (40%), Positives = 314/508 (61%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G   S      +  +  M +   RSD  T +  LK C  + A+ +  Q+H++ +
Sbjct: 492 WNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAI 551

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + G+  D  + + +LD+Y K G++ +A+  FD + V D  +W  LI+G  +      A+ 
Sbjct: 552 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALH 611

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +F +M++ GV  P+E T+     A   L A ++G +IH    +     +  V  +++DMY
Sbjct: 612 VFSQMRLMGVL-PDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMY 670

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG +D A+ +F  I+   ++  WN M++  A HG+G  AL+LF+QM   G+KPD V++
Sbjct: 671 AKCGSIDDAYCLFKRIE-MMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTF 729

Query: 316 LAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +  L AC+H+GLV +  +   SM  + G+KP ++HY  + D LGRAG ++EA +++ S+S
Sbjct: 730 IGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMS 789

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           M     +++TLL AC++ GD E  +  + KL+E+   +   +VLLSN+YAA  +WD++  
Sbjct: 790 MEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKL 849

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
            R  MK   VKK PGFS+IEV   IH F   D+S+ +   IY+K+ +++  IK+ GY   
Sbjct: 850 ARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPE 909

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T   L D+ EEEKE AL YHSEKLAVAFGL+ST  +T I+V KNLR+C DCH+ +K ISK
Sbjct: 910 TDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISK 969

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           VY+REI++RD  RFHRFKDG CSC DYW
Sbjct: 970 VYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 196/401 (48%), Gaps = 26/401 (6%)

Query: 39  LFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQ 98
           +  V + +I  Y    L ++  A  +F  ++      +N+V+ G+A S     AV  + Q
Sbjct: 356 MLTVSNSLINMYC--KLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQ 413

Query: 99  MLRGSHRSDALTCSFALKACARVL-ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157
           +LR   + D  T +  LKA + +   L  + QIH H ++   +AD+ + T L+D Y++  
Sbjct: 414 LLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNR 473

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
            +  A+ +F      D+ +WNA+++G  Q +   + ++LF  M  +G  + ++ T+   L
Sbjct: 474 CMKEAEVLFGRNNF-DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGE-RSDDFTLATVL 531

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
             CG L A  +G ++H Y  +   D+++ V + ++DMY KCG +  A   FD+I      
Sbjct: 532 KTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD- 590

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD--VSYLAALCACNHAGLVDDGVRLF 335
           V W T++     +G+  RAL +F QM   GV PD+  ++ LA   +C  A  ++ G ++ 
Sbjct: 591 VAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTA--LEQGRQIH 648

Query: 336 -NSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL------- 386
            N++  NC   P +    S+VD+  + G + +A  + K + M  ++  W  +L       
Sbjct: 649 ANALKLNCTSDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGLAQHG 705

Query: 387 ---GACQLYGDVEMAEIASRKLVEMGS-NNCGDFVLLSNLY 423
               A QL+  +E   I   K+  +G  + C    L+S  Y
Sbjct: 706 EGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAY 746



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 151/326 (46%), Gaps = 11/326 (3%)

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N +L G  H+ + +  +  +  M+      D +T    L    R+ +L    Q+H   L+
Sbjct: 291 NKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALK 350

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G      +  +L+++Y K+ +I  A+ VF+ M  RD+ SWN++IAG+AQ +L  EAV L
Sbjct: 351 LGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCL 410

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV----VCNAVI 252
           F ++   G+ KP+  T+   L A   L    EG  + + I    +  N V    V  A+I
Sbjct: 411 FMQLLRCGL-KPDHYTMTSVLKAASSL---PEGLSLSKQIHVHAIKTNNVADSFVSTALI 466

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
           D Y++   + +A  +F   +    LV WN M+  +    DG + LELF  M + G + DD
Sbjct: 467 DAYSRNRCMKEAEVLFG--RNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDD 524

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
            +    L  C     ++ G ++       G   ++     ++D+  + G +  A     S
Sbjct: 525 FTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDS 584

Query: 373 VSMGTDMVLWQTLLGACQLYGDVEMA 398
           + +  D V W TL+  C   G+ E A
Sbjct: 585 IPVPDD-VAWTTLISGCIENGEEERA 609



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 23/216 (10%)

Query: 107 DALTCS-FALKAC--ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
           DA++ S   L  C  AR+LAL E               +  L   L+ +Y+K G +  A+
Sbjct: 55  DAISTSDLMLGKCTHARILALEEN-------------PERFLVNNLISMYSKCGSLTYAR 101

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLA-----SEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           +VFD+M  RD+ SWN+++A  AQ +        EA  LF+ ++ + V+  + +T+   L 
Sbjct: 102 RVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYT-SRMTLSPMLK 160

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
            C H G     +  H Y  +  LD +  V  A++++Y K G + +   +F+ +  R  +V
Sbjct: 161 LCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVV 219

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
            WN M+ A+   G    A++L      +G+ P++++
Sbjct: 220 LWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEIT 255



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/378 (20%), Positives = 151/378 (39%), Gaps = 64/378 (16%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPT-----NAVLWYRQ 98
           + +I  Y  S    L YA  +F ++       +N++L   A SS+        A L +R 
Sbjct: 85  NNLISMY--SKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRI 142

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           + +    +  +T S  LK C     +  +   H +  + G   D  +   L+++Y K G+
Sbjct: 143 LRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGK 202

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT------ 212
           +   + +F+EM  RD+  WN ++    +     EA+DL       G+  PNE+T      
Sbjct: 203 VKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGL-HPNEITLRLLSR 261

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF---- 268
           + G  +  G + +++ G+              ++  N ++  Y   G      + F    
Sbjct: 262 ISGDDSEAGQVKSFENGNDASAV-------SEIISRNKILSGYLHAGQYSALLKCFMDMV 314

Query: 269 -DNIKCRKSLVTWNTMVMAFAVHGD-----------------------GPRALELFEQMG 304
             +++C +  VT+  +V+A AV  D                           + ++ ++ 
Sbjct: 315 ESDLECDQ--VTF-ILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLR 371

Query: 305 RAGV---------KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           + G+         + D +S+ + +     + L  + V LF  +  CG+KP+  HY ++  
Sbjct: 372 KIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPD--HY-TMTS 428

Query: 356 LLGRAGRLQEACDIVKSV 373
           +L  A  L E   + K +
Sbjct: 429 VLKAASSLPEGLSLSKQI 446


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/437 (47%), Positives = 287/437 (65%), Gaps = 3/437 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           T ++  YAK G I  A+ +FD +  RD   WN +I G AQ  L +E + LF++M +    
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQM-LNAKV 68

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           +PNEVTVL  L+ACG  GA + G  +H YI    + +NV V  ++IDMY+KCG L+ A  
Sbjct: 69  RPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARL 128

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ I   K +V WN+MV+ +A+HG    AL LF++M   G +P D++++  L AC+HAG
Sbjct: 129 VFERIS-NKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAG 187

Query: 327 LVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LV +G + F SM +  G++P ++HYG +V+LLGRAG L+EA ++VK++ +  D VLW TL
Sbjct: 188 LVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTL 247

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGAC+L+G++ + E  +  LV     N G +VLLSN+YAA   W+ V RVR  MK    +
Sbjct: 248 LGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFE 307

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K PG S IEV   +H+F   D  H K REIYE L+EI   +K +GY   T  VLHD+ + 
Sbjct: 308 KEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDA 367

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           +KE +L  HSEKLA+AFGLI+T   T+I++ KNLR+C DCH V KLISK+  R++++RDR
Sbjct: 368 QKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDR 427

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F +G CSC DYW
Sbjct: 428 NRFHHFVNGLCSCGDYW 444



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 126/233 (54%), Gaps = 2/233 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF  +       +N ++ G A    P   +L +RQML    R + +T    L AC +
Sbjct: 25  ARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQ 84

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             AL     +HS++  +G   +  +GT+L+D+Y+K G +  A+ VF+ +  +D+ +WN++
Sbjct: 85  TGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSM 144

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           + G A    + +A+ LFK M M G ++P ++T +G L AC H G   EG K    +++E 
Sbjct: 145 VVGYAMHGFSQDALRLFKEMCMIG-YQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEY 203

Query: 241 -LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            ++  V     ++++  + G L++A+E+  N++  +  V W T++ A  +HG+
Sbjct: 204 GIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGN 256



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 88/152 (57%), Gaps = 2/152 (1%)

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + ++V   A+I  YAK G++D+A  +FD ++ R + + WN M+  +A HG     L LF 
Sbjct: 3   EKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDA-ICWNVMIDGYAQHGLPNEGLLLFR 61

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           QM  A V+P++V+ LA L AC   G ++ G  + + + N G+  N++   S++D+  + G
Sbjct: 62  QMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCG 121

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            L++A  + + +S   D+V W +++    ++G
Sbjct: 122 SLEDARLVFERIS-NKDVVAWNSMVVGYAMHG 152


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/577 (38%), Positives = 344/577 (59%), Gaps = 8/577 (1%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +L+ C+      H+ +  L + +  TG F   +F V++ ++  Y+ +    L  A  +F 
Sbjct: 107 VLKACTRLPHYFHVGL-SLHSLVIKTG-FDWDVF-VKTGLVCLYSKNGF--LTDARKVFD 161

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           +I   +   + A++ G   S     A+  +R +L    R D+ T    L AC+RV  L  
Sbjct: 162 EIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLAS 221

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
              I  ++   G + +  + T+L+D+YAK G +  A++VFD M  +D+  W+ALI G A 
Sbjct: 222 GRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYAS 281

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
             +  EA+D+F  M+ E V +P+   ++G  +AC  LGA + G+     +  +    N V
Sbjct: 282 NGMPKEALDVFFEMQRENV-RPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPV 340

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           +  A+ID YAKCG + +A EVF  ++ RK  V +N ++   A+ G    A  +F QM + 
Sbjct: 341 LGTALIDFYAKCGSVAQAKEVFKGMR-RKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKV 399

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQE 365
           G++PD  +++  LC C HAGLVDDG R F+ M++   V P ++HYG +VDL  RAG L E
Sbjct: 400 GMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVE 459

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A D+++S+ M  + ++W  LLG C+L+ D ++AE   ++L+E+   N G +VLLSN+Y+A
Sbjct: 460 AQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSA 519

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
             RWD+  ++R ++  + ++K+PG S++EV GV+H+F   D SH    +IYEKL+ +   
Sbjct: 520 SHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKD 579

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           ++E GY   T  VL D+ EEEKE  L  HSEKLAVAF LIST     I+V KNLR+C DC
Sbjct: 580 LREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDC 639

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H+ IKL+SKV  REIIVRD  RFH F +G+CSC+DYW
Sbjct: 640 HEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 202/415 (48%), Gaps = 12/415 (2%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA--YA 61
           + + L+KC + G  S    KQ    L   G  Q       + +I     S L+  A  YA
Sbjct: 1   MGSELKKCFAWGLKSLHQAKQCHCLLLRLGLHQD------TYLINLLLRSSLHFAATQYA 54

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             +F Q   P+   +N ++RG+  +    +AV  Y  M +     D  T  F LKAC R+
Sbjct: 55  TVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRL 114

Query: 122 LALFET-LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              F   L +HS V++ GF  D  + T L+ +Y+K G +  A+KVFDE+  +++ SW A+
Sbjct: 115 PHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAI 174

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G  +     EA+ LF+ + +E   +P+  T++  L AC  +G    G  I  Y+RE  
Sbjct: 175 ICGYIESGCFGEALGLFRGL-LEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESG 233

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              NV V  +++DMYAKCG +++A  VFD +   K +V W+ ++  +A +G    AL++F
Sbjct: 234 SVGNVFVATSLVDMYAKCGSMEEARRVFDGM-VEKDVVCWSALIQGYASNGMPKEALDVF 292

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M R  V+PD  + +    AC+  G ++ G      M       N     +++D   + 
Sbjct: 293 FEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKC 352

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           G + +A ++ K +    D V++  ++    + G V  A     ++V++G    G+
Sbjct: 353 GSVAQAKEVFKGMRR-KDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGN 406


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/532 (38%), Positives = 318/532 (59%), Gaps = 3/532 (0%)

Query: 52  LSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTC 111
            S   E+  A  LF +I        NA++ G   + +  ++V  ++++L    R  + T 
Sbjct: 76  FSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTI 135

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
              +   +     +    IH   ++ G ++ + + T L  VY ++ E++ A+++FDE   
Sbjct: 136 VGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAE 195

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           + +ASWNA+I+G  Q  L   A+ LF+ M+   V  PN VTV   L+AC  +GA   G+ 
Sbjct: 196 KTLASWNAMISGCTQNGLTDAAISLFQTMQKNNV-NPNPVTVTSILSACAQIGALSLGEW 254

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +H  I+  R + NV V  A+IDMYAKCG +  A E+FD +   K+ VTWN M+  + +HG
Sbjct: 255 VHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFD-LMPEKNEVTWNAMISGYGLHG 313

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHY 350
            G  AL+LF  M  + VKP  +++L+ L AC+HAGLV +G  +F++M  + G +P  +HY
Sbjct: 314 HGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHY 373

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
             +VD+LGRAG+L++A + +K++ +     +W  LLGAC ++ D  +A +AS KL E+  
Sbjct: 374 ACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDP 433

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
            N G +VL+SN+Y+   ++     VR+  K + + K PG + IE+G V H F + D+SH 
Sbjct: 434 ENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHP 493

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           + + IY +LD++  K+ E G+   T+ VLHD+ EEEKE  +  HSEKLA+AFGLIST   
Sbjct: 494 QSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPG 553

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             I++ KNLR+C DCH+  K +SK+  R I+VRD  RFH FKDG CSC DYW
Sbjct: 554 AEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 147/316 (46%), Gaps = 4/316 (1%)

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGS-HRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
           ++ G   +S   +++  +  M+ G+  R D  T    L A A +  L   +QI    ++ 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           GF +   L T L+ +++K GE+  A+ +F E+  +D+ S NA+I+G        ++V LF
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
           K +   G  + +  T++G +      G     + IH +  +  +  +  V  A+  +Y +
Sbjct: 121 KELLSSGE-RVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCR 179

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
              +  A ++FD     K+L +WN M+     +G    A+ LF+ M +  V P+ V+  +
Sbjct: 180 LNEMIFARQLFDE-SAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTS 238

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            L AC   G +  G  + + + +   + N+    +++D+  + G +  A ++   +    
Sbjct: 239 ILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKN 298

Query: 378 DMVLWQTLLGACQLYG 393
           + V W  ++    L+G
Sbjct: 299 E-VTWNAMISGYGLHG 313


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/611 (37%), Positives = 331/611 (54%), Gaps = 75/611 (12%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL-----FRQINAPSTNDF 76
           I+QLQ H  +T +F              + LS L +    HA      F        NDF
Sbjct: 58  IQQLQHHPHSTLKFNPTPLQTPPTSPSQHDLSTLEQTKQIHAHIIKTHFHHALQIPLNDF 117

Query: 77  ----------NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
                     N V+      ++P NA+  Y Q+ +     D       LKAC +V     
Sbjct: 118 PSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQL 177

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD------------- 173
             +IH  VL+ G   D  +G  L+ +Y +   +  A+ VFD+M  RD             
Sbjct: 178 GKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLD 237

Query: 174 ----------------------IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
                                 + SW A+IAG  + N   E   LF RM+ E +F PNE+
Sbjct: 238 MYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF-PNEI 296

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T+L                       +ER++++ ++  A++DMYAKCG ++ A  +F   
Sbjct: 297 TMLN----------------------KERVEVDCILNTALVDMYAKCGDINAAGRLFIEA 334

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
             R  +  WN ++  FA+HG G  AL++F +M R GVKP+D++++  L AC+HAGLV +G
Sbjct: 335 ISR-DICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEG 393

Query: 332 VRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
            +LF  M +  G+ P ++HYG +VDLLGRAG L EA +++KS+ +  + ++W  L+ AC+
Sbjct: 394 KKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACR 453

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
           L+ + ++ E+A+ +L+E+   NCG  VL+SN+YAA  RW D   VRK MK   +KK PG 
Sbjct: 454 LHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGH 513

Query: 451 SYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           S IEV G +H+F   D+SH + R I E L E+  K+ E GY   TS VL +I EEEKE A
Sbjct: 514 SVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETA 573

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           L YHSEKLA+AFGLIST+ +T I++ KNLR+C DCH   KL+SK+Y R IIVRDR RFH 
Sbjct: 574 LTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHH 633

Query: 571 FKDGACSCKDY 581
           F++G CSC DY
Sbjct: 634 FREGYCSCGDY 644


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/583 (38%), Positives = 344/583 (59%), Gaps = 10/583 (1%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
           M+   +LLQ C    A+     KQL A +   G   + L    +K++  Y +   N L  
Sbjct: 1   MSYYASLLQSCVVRKAIEPG--KQLHARICQVGISFNPLLA--TKLVNLYCIC--NSLTN 54

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH LF +I+  +   +N ++RG A +     A+  Y QM       D  T  F LKAC+ 
Sbjct: 55  AHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSA 114

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + A+ E  +IH  V+R G  +D  +G  L+D+YAK G + SA++VFD++  RD+  WN++
Sbjct: 115 LSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSM 174

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +A  +Q     E++ L + M   G+ KP E T + ++AA    G   +G ++H Y     
Sbjct: 175 LATYSQNGQPDESLALCRVMAFNGL-KPTEGTFVISIAASADNGLLPQGKELHGYSWRHG 233

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
            + N  V  A++DMYAK G ++ A  +F+ ++  K +V+WN M+  +A+HG    AL+LF
Sbjct: 234 FESNDKVKTALMDMYAKSGSVNVARSLFELLE-EKRVVSWNAMITGYAMHGHANEALDLF 292

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGR 359
           ++M +  V PD ++++  L AC+H GL+++G   F SM ++  + P ++HY  ++DLLG 
Sbjct: 293 KEM-KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGH 351

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
            GRL+EA  ++  + +  D  +W  LL +C+++G+VEM E+A  KLVE+  ++ G++V+L
Sbjct: 352 CGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVIL 411

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YA   +WD V R+R  M N+ +KK    S+IEVG  +H F + D SH K   IY +L
Sbjct: 412 SNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAEL 471

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
                 +KE GYA     V HD+ ++EK + +  HSE+LA+AFGLISTS  T + + KNL
Sbjct: 472 KRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNL 531

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RIC DCH  IK ISK+  REI +RD  R+H FKDG CSC D+W
Sbjct: 532 RICEDCHVAIKFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/592 (36%), Positives = 342/592 (57%), Gaps = 38/592 (6%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +QL  H+   G  Q  +F V + +++ Y L    +L  A  +F          +N ++  
Sbjct: 159 RQLHGHVLKHG-LQYNVF-VHTALVQMYLLC--GQLDTARGVFDVCPKADVITWNMIISA 214

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
                K   +   +  M         +T    L AC+++  L    ++HS+V      ++
Sbjct: 215 YNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESN 274

Query: 143 ALLGTTLLDVYA-------------------------------KVGEIVSAKKVFDEMGV 171
            +L   ++D+YA                                +GEI  A+  FD+M  
Sbjct: 275 LVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPE 334

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           +D  SW A+I G  + N   EA++LF+ M+   V KP+E T++  L AC HLGA + G+ 
Sbjct: 335 KDYVSWTAMIDGYIRSNRFKEALELFRNMQATNV-KPDEFTMVSVLTACAHLGALELGEW 393

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           I  YI   ++  ++ V NA+IDMY KCG +DKA  +F  +  R    TW  M++  AV+G
Sbjct: 394 IRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF-TWTAMIVGLAVNG 452

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHY 350
            G +AL++F  M +A + PD+++Y+  L AC H GLVD G + F  M +  G++PN+ HY
Sbjct: 453 HGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHY 512

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
           G +VDLL RAGRL+EA ++++++ +  + ++W  LL  C++Y + +MAE+  ++++E+  
Sbjct: 513 GCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEP 572

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
           +N   +VLL N+YAA +RW+D+  +R+ M ++ +KK PG S IE+ G +H+F   D+SH 
Sbjct: 573 DNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHP 632

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           + + I  KLD++   +K  GY+   S V  DI EE+KEN++  HSEKLA+AFGLI++   
Sbjct: 633 QTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPG 692

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +I++ KNLR+C DCH++ KL+SKVYNRE+IVRDR RFH FK G CSCKDYW
Sbjct: 693 VTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 198/426 (46%), Gaps = 41/426 (9%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           L +LL+ C S   +  +H + ++  L      Q++       ++ F       +  YA  
Sbjct: 42  LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNR-------VMTFCCTHEYGDFQYARR 94

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF +I  P+   +N ++RG +    P   V  Y +MLR   + D  T  F  K   R +A
Sbjct: 95  LFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIA 154

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L    Q+H HVL+HG   +  + T L+ +Y   G++ +A+ VFD     D+ +WN +I+ 
Sbjct: 155 LEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISA 214

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             +     E+  LF  M+ + V  P  VT++  L+AC  L   + G K+H Y++  +++ 
Sbjct: 215 YNKVGKFEESRRLFLVMEDKQVL-PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVES 273

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG------------ 291
           N+V+ NA+IDMYA CG +D A  +F ++  R  +++W T+V  F   G            
Sbjct: 274 NLVLENAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEIDVARNYFDKM 332

Query: 292 ------------DG-------PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
                       DG         ALELF  M    VKPD+ + ++ L AC H G ++ G 
Sbjct: 333 PEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGE 392

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            +   +    +K ++    +++D+  + G + +A  I + +S   D   W  ++    + 
Sbjct: 393 WIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ-RDKFTWTAMIVGLAVN 451

Query: 393 GDVEMA 398
           G  E A
Sbjct: 452 GHGEKA 457


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 354/588 (60%), Gaps = 40/588 (6%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           I+Q+ A L   G  +     +  + ++  ALS    L YA+ +  + + P+    N+++R
Sbjct: 30  IRQIHAKLYVDGTLKDD--HLVGQFVKAVALSDHTYLDYANQILDRSDKPTLFALNSMIR 87

Query: 82  GLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKACARVLALFET-LQIHSHVLRHG 138
               S  P  +  +Y ++L   +  + D  T +F ++AC   L + ET LQ+H   +R G
Sbjct: 88  AHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTG-LGMRETGLQVHGMTIRRG 146

Query: 139 FLADALLGTTLLDVYAKVG-------------------------------EIVSAKKVFD 167
           F  D  + T L+ +YA++G                               ++  A+K+F+
Sbjct: 147 FDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFE 206

Query: 168 EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227
            M  +D  +WNA+I+G AQ   + EA++LF  M++EGV K N V+++  L+AC  LGA  
Sbjct: 207 GMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGV-KVNGVSMISVLSACTQLGALD 265

Query: 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
           +G   H YI   ++ + V +   ++D+YAKCG +DKA EVF  ++  K++ TW++ +   
Sbjct: 266 QGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGME-EKNVYTWSSALNGL 324

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN 346
           A++G G + L+LF  M + GV P+ V++++ L  C+  G VD+G + F+SM N  G++P 
Sbjct: 325 AMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQ 384

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
           + HYG +VDL  RAGRL++A  I++ + M     +W +LL A ++Y ++E+  +AS+K++
Sbjct: 385 LDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKML 444

Query: 407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSD 466
           E+ ++N G +VLLSN+YA  + WD+V  VR++MK++ V+K PG S +EV G +H+FF  D
Sbjct: 445 ELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGD 504

Query: 467 KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIS 526
           KSH K+ EI     +I  +++  GY A T+ V+ DI EEEKE+ALC HSEK A+AFG++S
Sbjct: 505 KSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMS 564

Query: 527 TSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
                 I++ KNLR+C DCH V  +ISK++NREIIVRDR RFH FKDG
Sbjct: 565 LKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 612



 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 180/480 (37%), Positives = 281/480 (58%), Gaps = 4/480 (0%)

Query: 105  RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
            R + +T    + AC       E + IH  V++ G L +  +   L+++Y K G+++S+ K
Sbjct: 634  RPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCK 693

Query: 165  VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
            +F+++ V+++ SWN +I    Q  LA E +  F   +  G+ KP++ T L  L  C  +G
Sbjct: 694  LFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGL-KPDQATFLAVLRVCEDIG 752

Query: 225  AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
              +    IH  I     + N  +  A++D+YAK G L+ +  VF  I    S+  W  M+
Sbjct: 753  VVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSM-AWTAML 811

Query: 285  MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGV 343
             A+A HG G  A++ FE M   G+ PD V++   L AC+H+GLV++G   F +M+    +
Sbjct: 812  AAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRI 871

Query: 344  KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
            +P + HY  +VDL+GR+G LQ+A  ++K + M     +W  LLGAC++Y D ++   A++
Sbjct: 872  EPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAK 931

Query: 404  KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
            +L E+   +  ++++LSN+Y+A   W D  R+R  MK + + +  G+SYIE G  IHKF 
Sbjct: 932  RLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFV 991

Query: 464  TSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
              D SH +  +I +KL EI  K+K E G+ + T  VLHD+ E+ KE  +  HSEK+A+AF
Sbjct: 992  VGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAF 1051

Query: 523  GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            GL+  S    I + KNLRIC DCH+  K IS +  R II+RD  RFH F +G+CSC+DYW
Sbjct: 1052 GLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 164 KVFD-EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
           K+F+ E+ VRD   ++    G  +G L      L + M+ E  F+PNEVT L  ++AC H
Sbjct: 592 KIFNREIIVRDRNRFHHFKDG--RGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVH 649

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
            G  +EG  IH  + +  +   V V NA++++Y K G L  + ++F+++   K+LV+WNT
Sbjct: 650 GGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSV-KNLVSWNT 708

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           M++    +G     L  F      G+KPD  ++LA L  C   G+V     +   +  CG
Sbjct: 709 MIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCG 768

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
              N     +++DL  + GRL+++  +   ++   D + W  +L A   +G
Sbjct: 769 FNANTCITTALLDLYAKLGRLEDSSTVFLEIT-SPDSMAWTAMLAAYATHG 818


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/549 (38%), Positives = 331/549 (60%), Gaps = 9/549 (1%)

Query: 36  QSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSK-PTNAVL 94
           Q+    +R+ ++   A +P   L+YA  +F +I +P T  +N ++R  +HS   P++++ 
Sbjct: 17  QNDPLSLRTLLLSCVAAAP-ESLSYARYVFSRIPSPDTIAYNTIIR--SHSRFFPSHSLS 73

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
           ++  M       D  T  F LKAC+R+      L +HS ++++G  +D  +   L+ VY 
Sbjct: 74  YFFSMRSNGIPLDNFTFPFVLKACSRLQI---NLHLHSLIVKYGLGSDIFVQNALICVYG 130

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
             G +  A KVFDEM  RD  SW+ +IA       ASEA+DLF++M++E    P+EVT+L
Sbjct: 131 YCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTML 190

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             ++A  HLG  + G  +  +I      ++V +  A+IDM+++CG +D++  VF+ +  R
Sbjct: 191 SVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVR 250

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
            +++TW  ++    +HG    AL +F  M ++GV+PD V++   L AC+H GLV +G  +
Sbjct: 251 -NVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDI 309

Query: 335 FNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           F S+    G+ P + HYG +VD+LGRAG L EA D V+ + M  + ++W+TLLGAC  + 
Sbjct: 310 FESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHN 369

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           ++ +AE    K+ ++ S+  GD VLLSN+Y A  RW +   +R  M+ + + K PG S I
Sbjct: 370 NLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSI 429

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
            V   IH+F + D SH +  +I + L  I+  ++  GY   T  VLHDI EEE+E++L Y
Sbjct: 430 NVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSY 489

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEKLAVAF ++S  +  +I++ KNLRIC DCH  +K IS  + R+II+RDR RFH F+ 
Sbjct: 490 HSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEK 549

Query: 574 GACSCKDYW 582
           G CSC DYW
Sbjct: 550 GLCSCHDYW 558


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/568 (39%), Positives = 328/568 (57%), Gaps = 44/568 (7%)

Query: 18  SHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQI--NAPSTND 75
           S   ++Q+ A +  T    S L   R  ++   A +P     YA  +F+ +    P T  
Sbjct: 73  SPFELRQVHAQIIKTNAPLSILPLTRVGLV--CAFTP--SFHYAQQIFKCVEKQKPETFV 128

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N+ L+ LA    P +A++ + ++ +     D  TCS  L+AC  +L L     +H  V 
Sbjct: 129 WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 188

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + GF                                    SW ++IAG  Q   A EA+ 
Sbjct: 189 KVGF-----------------------------------RSWTSMIAGYVQCGKAKEAIH 213

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF +M+  GV K NEVTV+  LAAC  LGA   G +IHEY        NV + N +IDMY
Sbjct: 214 LFAKMEEAGV-KCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMY 272

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            KCG L++A +VF+ ++  +++V+W+ M+   A+HG    AL LF  M + G++P+ V++
Sbjct: 273 VKCGCLEEACKVFEEME-ERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTF 331

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +  L AC+H GL+ +G R F SM  + G+ P ++HYG +VDLL RAG L EA + + ++ 
Sbjct: 332 IGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP 391

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           M  + V+W  LLGAC+++ +VEMAE A + L+E+   N G +V+LSN+YA   RW+D  R
Sbjct: 392 MKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTAR 451

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VRK MK+R VKK PG+S I V GV+H+F   ++SH    +I+++ +E++ +++  GY   
Sbjct: 452 VRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPN 511

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           TS VL DI E EK   +  HSEKLA+ FGL++T   T I++ KNLRIC DCH   KLIS 
Sbjct: 512 TSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISA 571

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + NREI+VRDR RFH F D +CSC+DYW
Sbjct: 572 IVNREIVVRDRNRFHCFNDNSCSCRDYW 599


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 344/573 (60%), Gaps = 10/573 (1%)

Query: 14  NGAVSHIHIKQL-QAHLTTTGQFQSKLFPVRSKIIEFYAL--SPLNELAYAHALFRQINA 70
           NG  +   +++L + HL  T         +R+ ++  Y    SP +    A  +F Q+  
Sbjct: 370 NGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDD----ARTVFDQLEL 425

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           P+   +N+++       +  +A+  +R M +   + D +     L AC           +
Sbjct: 426 PNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLV 485

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H  V   G     L+ T+L+++YAK GE+  A+ +  EM  + I +WN LI G A    +
Sbjct: 486 HQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRS 545

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
            EA++ ++++++E +   ++VT +  L AC    +  EG  IH    E  LD +V+V NA
Sbjct: 546 REALEAYQKLQLEAI-PVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNA 604

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           + +MY+KCG ++ A  +FD++  R S V+WN M+ A+A HG+    L+L  +M + GVK 
Sbjct: 605 LTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKL 663

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           + +++++ L +C+HAGL+ +G + F+S+  + G++   +HYG +VDLLGRAG+LQEA   
Sbjct: 664 NGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKY 723

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW 429
           +  + +   +V W +LLGAC++  D++  ++A+ KL+E+   N    V+LSN+Y+    W
Sbjct: 724 ISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDW 783

Query: 430 DDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEY 489
            +  ++R+AM +R VKKVPG S I+V   +H+F   D SH +  EIY+K++E+ F ++E 
Sbjct: 784 KNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREA 843

Query: 490 GYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVI 549
           GY   T  VLHD+ EE+KE+ L YHSEKLA+AFGLIST E +S+ +FKNLR+C DCH   
Sbjct: 844 GYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTAT 903

Query: 550 KLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K ISK+  REI+VRD  RFH F+DG+CSCKDYW
Sbjct: 904 KFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 174/337 (51%), Gaps = 4/337 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A A F +I A +   +N ++   +       A+  +  ML      +A+T    L +
Sbjct: 8   LGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNS 67

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C     L + + +H+  L  GF  + L+ T LL++Y K G ++ A+ VF+EM  +++ +W
Sbjct: 68  CGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTW 127

Query: 178 NALIAGLA-QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           NA++   + QG     AV+LF RM +EGV K N +T L  L +     A ++G  IH  +
Sbjct: 128 NAMLGVYSLQGCCWKLAVELFTRMLLEGV-KANVITFLNVLNSVVDPDALRKGKFIHSCV 186

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           RE    ++V V  A+++ Y KCG L  A +VFD + CR S+ TWN+M+ A+++      A
Sbjct: 187 RESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCR-SVGTWNSMISAYSISERSGEA 245

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
             +F++M + G + D V++L+ L AC +   +  G  +  S++    + ++    +++ +
Sbjct: 246 FFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITM 305

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
             R    ++A  +   +   T+++ W  ++ A   +G
Sbjct: 306 YARCRSPEDAAQVFGRMKQ-TNLITWSAIITAFADHG 341



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 186/391 (47%), Gaps = 11/391 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYAL--SPLNELAYAHALFRQINAPSTNDFNA 78
           H K ++  ++ T  F+  LF V + +I  YA   SP +    A  +F ++   +   ++A
Sbjct: 279 HGKHVRESISETS-FELDLF-VGTALITMYARCRSPED----AAQVFGRMKQTNLITWSA 332

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           ++   A       A+ ++R M +     + +T    L        L E  +IH  +  HG
Sbjct: 333 IITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHG 392

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
                 +   L++VY +      A+ VFD++ + ++ SWN++I    Q     +A+ LF+
Sbjct: 393 LDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFR 452

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            M+ +G+ +P+ V  +  L AC      +    +H+ + E  L  + +V  ++++MYAK 
Sbjct: 453 TMQQQGI-QPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKA 511

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G LD A  +   +   + +  WN ++  +A+HG    ALE ++++    +  D V++++ 
Sbjct: 512 GELDVAEVILQEMD-EQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISV 570

Query: 319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
           L AC  +  + +G  + ++   CG+  ++    ++ ++  + G ++ A  I  S+ + + 
Sbjct: 571 LNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRS- 629

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            V W  +L A   +G+ E      RK+ + G
Sbjct: 630 AVSWNGMLQAYAQHGESEEVLKLIRKMEQEG 660



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 3/169 (1%)

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
           +Y++ G +  A   F ++  R++ SWN +I+  +      EA+ LF  M +EGV  PN +
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGV-APNAI 59

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T++  L +CG     ++G  +H    E     N +V  A+++MY KCG L  A  VF+ +
Sbjct: 60  TLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPR-ALELFEQMGRAGVKPDDVSYLAAL 319
              K++VTWN M+  +++ G   + A+ELF +M   GVK + +++L  L
Sbjct: 120 -AEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVL 167


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/563 (40%), Positives = 332/563 (58%), Gaps = 8/563 (1%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           HI +L A L  TG     L  +R  ++   A +P + L+YA ++F  I  P T  FN ++
Sbjct: 3   HIYKLHARLLKTGHHNHPL-ALRRLLLSCAASAPAS-LSYARSIFDLIAFPDTFAFNTII 60

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           R  A SS   +  L+ +  + G    D  T  F LKACAR   L   L +HS + + GF 
Sbjct: 61  RAHADSSPSFSLSLFSKMTMAGV-SPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFD 116

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
           +D  +   L+  Y   G +  A K F+EM  RD+ SW+++IA  A+     EA+ LF+RM
Sbjct: 117 SDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRM 176

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           ++ G  KP+EV VL  ++A   LG  + G  I  +I    L+  V +  A++DM+++CG 
Sbjct: 177 QLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGC 236

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           ++++  VFD +   ++++TW  ++   AVHG    AL +F +M   G +PD V++   L 
Sbjct: 237 IEESMRVFDEMG-ERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLV 295

Query: 321 ACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC+H GLV +G  +F S+ N  G++P  +HYG +VDLLGRAG L EAC  V  + +  + 
Sbjct: 296 ACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNS 355

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           ++W+TLLGAC  +  +E+AE    K+ E+ S + GD+VLLSN+Y    RW +   VR +M
Sbjct: 356 IIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSM 415

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           + + + K PG S I V  +IH+F   D +H ++  I E L  ++  +K  GY    S VL
Sbjct: 416 REKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVL 475

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
            DI EEEKE+ L YHSEKLAVAF L+   ++ +I+V KNLRIC DCH  +K  S V+ RE
Sbjct: 476 FDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFERE 535

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           II+RDR RFH F  G+CSC+DYW
Sbjct: 536 IIIRDRNRFHHFSKGSCSCRDYW 558


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/540 (39%), Positives = 332/540 (61%), Gaps = 5/540 (0%)

Query: 46  IIEFYALSPLN-ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL-WYRQMLRGS 103
           +I  YA   ++  +  A  +F QI   +   + A++ G           L  +R M+   
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH 371

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
              +  T S  LKACA + AL    Q+ +H ++ GF +   +  +L+ +YA+ G I  A+
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR 431

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           K FD +  +++ S+N +I   A+   + EA++LF  ++ +G+   +  T    L+    +
Sbjct: 432 KAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGM-GASAFTFASLLSGAASI 490

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
           G   +G++IH  + +  L +N  VCNA+I MY++CG ++ AF+VF++++ R ++++W ++
Sbjct: 491 GTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR-NVISWTSI 549

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCG 342
           +  FA HG   +ALELF +M   GV+P++V+Y+A L AC+H GLV++G + F SM    G
Sbjct: 550 ITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHG 609

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           V P M+HY  +VD+LGR+G L EA   + S+    D ++W+T LGAC+++G++E+ + A+
Sbjct: 610 VIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAA 669

Query: 403 RKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKF 462
           + ++E   ++   ++LLSNLYA+  +WD+V  +RKAMK + + K  G S++EV   +HKF
Sbjct: 670 KMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKF 729

Query: 463 FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
           +  D SH K  EIY++L  +  KIK+ GY      VLHD+ EE+KE  L  HSEK+AVAF
Sbjct: 730 YVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAF 789

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           GLISTS+   I+VFKNLRIC DCH  IK IS    REIIVRD  RFH  KDG CSC +YW
Sbjct: 790 GLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 177/359 (49%), Gaps = 11/359 (3%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  +F ++   +   +  ++  L        A+  +  M+   +  D  T S  + 
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVIS 279

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV---GEIVSAKKVFDEMGVRD 173
           ACA +  L    Q+HS  +RHG   D  +G  L+++YAK    G + +A+K+FD++   +
Sbjct: 280 ACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN 339

Query: 174 IASWNALIAGLAQ-GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           + SW A+I G  Q G    EA+DLF+ M +  V  PN  T    L AC +L A + G+++
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI-PNHFTFSSTLKACANLAALRIGEQV 398

Query: 233 HEYIREERLDMNVVVC--NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
             +    +L  + V C  N++I MYA+ G +D A + FD I   K+L+++NT++ A+A +
Sbjct: 399 --FTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFD-ILFEKNLISYNTVIDAYAKN 455

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
            +   ALELF ++   G+     ++ + L      G +  G ++   +   G+K N    
Sbjct: 456 LNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVC 515

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            +++ +  R G ++ A  + + +    +++ W +++     +G    A     K++E G
Sbjct: 516 NALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFHKMLEEG 573



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 157/315 (49%), Gaps = 13/315 (4%)

Query: 61  AHALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           A ++FR +   S+ D   ++A++   A+++    A+L +  M+   +  +    + A +A
Sbjct: 120 ATSIFRLMG--SSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRA 177

Query: 118 CARVLALFETLQIHSHVLRHGFL-ADALLGTTLLDVYAK-VGEIVSAKKVFDEMGVRDIA 175
           C+    +     I   V++ G+L +D  +G  L+D++ K  G++VSA KVF++M  R+  
Sbjct: 178 CSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAV 237

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           +W  +I  L Q   A EA+DLF  M   G ++P+  T+ G ++AC ++     G ++H  
Sbjct: 238 TWTLMITRLMQFGYAGEAIDLFLDMIFSG-YEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 236 IREERLDMNVVVCNAVIDMYAKC---GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
                L ++  V   +I+MYAKC   G +  A ++FD I    ++ +W  M+  +   G 
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI-LDHNVFSWTAMITGYVQKGG 355

Query: 293 -GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
               AL+LF  M    V P+  ++ + L AC +   +  G ++F      G         
Sbjct: 356 YDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVAN 415

Query: 352 SVVDLLGRAGRLQEA 366
           S++ +  R+GR+ +A
Sbjct: 416 SLISMYARSGRIDDA 430



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 163/382 (42%), Gaps = 50/382 (13%)

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
           +GSH  D  T S  LK C R  +      +H  + +     D++   +L+ +Y+K G+  
Sbjct: 60  QGSH-PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWE 118

Query: 161 SAKKVFDEMG-VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
            A  +F  MG  RD+ SW+A+++  A  N+   A+  F  M +E  + PNE     A  A
Sbjct: 119 KATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM-IENGYYPNEYCFAAATRA 177

Query: 220 CGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKC-GLLDKAFEVFDNIKCRKSL 277
           C        GD I  + I+   L  +V V   +IDM+ K  G L  AF+VF+ +  R + 
Sbjct: 178 CSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA- 236

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA------------ 325
           VTW  M+      G    A++LF  M  +G +PD  +    + AC +             
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 326 ----GLVDD---GVRLFNSMANCGVKPNM----KHYGSVVD------------LLGRAGR 362
               GL  D   G  L N  A C V  +M    K +  ++D             + + G 
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356

Query: 363 LQEACDIVKSVSMG---TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG--SNNCGDFV 417
            +EA D+ + + +     +   + + L AC     + + E      V++G  S NC    
Sbjct: 357 DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 418 LLSNLYAAYERWDDVGRVRKAM 439
           L+S +YA   R DD    RKA 
Sbjct: 417 LIS-MYARSGRIDD---ARKAF 434



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 2/163 (1%)

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           LI  +  G L  +A+   + M  +G   P+  T    L  C    ++  G  +HE + + 
Sbjct: 38  LIQEINNGRL-HKAISTLEHMVHQGS-HPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQS 95

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            L ++ V  N++I +Y+KCG  +KA  +F  +   + L++W+ MV  FA +  G RAL  
Sbjct: 96  DLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLT 155

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           F  M   G  P++  + AA  AC+ A  V  G  +F  +   G
Sbjct: 156 FVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTG 198


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/542 (38%), Positives = 325/542 (59%), Gaps = 5/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + ++  YA     +++ A  +F ++   +   +  ++ G A   +   A+    +M +
Sbjct: 234 VGTSLVGMYA--KCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQ 291

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                + +T +  L+ C   LAL    ++H ++++ G+  +  +   L+ +Y K G +  
Sbjct: 292 AEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKE 351

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+K+F ++  RD+ +W A++ G AQ     EA+DLF+RM+ +G+ KP+++T   AL +C 
Sbjct: 352 ARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGI-KPDKMTFTSALTSCS 410

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
                +EG  IH+ +      ++V + +A++ MYAKCG +D A  VF+ +  R ++V W 
Sbjct: 411 SPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSER-NVVAWT 469

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-AN 340
            M+   A HG    ALE FEQM + G+KPD V++ + L AC H GLV++G + F SM  +
Sbjct: 470 AMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLD 529

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            G+KP ++HY   VDLLGRAG L+EA +++ ++       +W  LL AC+++ DVE  E 
Sbjct: 530 YGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGER 589

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A+  ++++  ++ G +V LSN+YAA  R++D  +VR+ M+ RDV K PG S+IEV G +H
Sbjct: 590 AAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVH 649

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F   DKSH + +EIY +L ++  +IKE GY   T  VLHD+ EE+K   LC HSE+LA+
Sbjct: 650 VFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAI 709

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
            +GL+ T   T I++ KNLR+C DCH   K ISKV  REII RD  RFH F DG CSC D
Sbjct: 710 TYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGD 769

Query: 581 YW 582
           +W
Sbjct: 770 FW 771



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 186/393 (47%), Gaps = 15/393 (3%)

Query: 4   LNALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
              LLQ+C+   ++     +H   L++ +      ++ L  + +K            L  
Sbjct: 99  FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKC---------GSLTD 149

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  I   +   + A++      ++   A   Y  M     + D +T    L A   
Sbjct: 150 ARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTN 209

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              L    ++H  + + G   +  +GT+L+ +YAK G+I  A+ +FD++  +++ +W  L
Sbjct: 210 PELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLL 269

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IAG AQ      A++L ++M+   V  PN++T    L  C    A + G K+H YI +  
Sbjct: 270 IAGYAQQGQVDVALELLEKMQQAEV-APNKITYTSILQGCTTPLALEHGKKVHRYIIQSG 328

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
               + V NA+I MY KCG L +A ++F ++  R  +VTW  MV  +A  G    A++LF
Sbjct: 329 YGREIWVVNALITMYCKCGGLKEARKLFGDLPHR-DVVTWTAMVTGYAQLGFHDEAIDLF 387

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M + G+KPD +++ +AL +C+    + +G  +   + + G   ++    ++V +  + 
Sbjct: 388 RRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKC 447

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           G + +A  +   +S   ++V W  ++  C  +G
Sbjct: 448 GSMDDARLVFNQMSE-RNVVAWTAMITGCAQHG 479



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 4/213 (1%)

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           QG L  EA+ +   M ++G    ++V   G L  C  L + ++G ++H  I +  +  N 
Sbjct: 74  QGRL-KEALGILNTMILQGTRVYSDV-FRGLLQECARLRSLEQGREVHAAILKSGIQPNR 131

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            + N ++ MYAKCG L  A  VFD I+ R ++V+W  M+ AF        A + +E M  
Sbjct: 132 YLENTLLSMYAKCGSLTDARRVFDGIRDR-NIVSWTAMIEAFVAGNQNLEAYKCYETMKL 190

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           AG KPD V++++ L A  +  L+  G ++   +A  G++   +   S+V +  + G + +
Sbjct: 191 AGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISK 250

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           A  I   +    ++V W  L+      G V++A
Sbjct: 251 AQVIFDKLPE-KNVVTWTLLIAGYAQQGQVDVA 282


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/545 (38%), Positives = 334/545 (61%), Gaps = 9/545 (1%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           +K+I  Y    L  + +A  +F +    +   +NA+ R LA +S+  + ++ Y QM    
Sbjct: 113 TKLINMYC--DLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIG 170

Query: 104 HRSDALTCSFALKACA----RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
             S+  T ++ LKAC      +  L +  +IH+H+LRHG+     + TTLLDVYA+ G +
Sbjct: 171 IPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYV 230

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK-PNEVTVLGALA 218
             A  VF  M  ++I SW+A+IA  A+  +  +A++LF+ M +E     PN +T++  L 
Sbjct: 231 SYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQ 290

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC  L A + G  +H Y+    LD  + V N +I MY +CG +     VFD +K ++ ++
Sbjct: 291 ACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMK-KRDVI 349

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +WN+++  + +HG G +A+++FE M   GV P  ++++  LCAC+HAGLV++   LF SM
Sbjct: 350 SWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESM 409

Query: 339 AN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
            N   + P M+HY  +VD+LGRA RL EA ++++++       +W +LLG+C+++ +VE+
Sbjct: 410 LNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVEL 469

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
           AE AS  L E+   N G++VLLS++YA    W+DV RVRK +++R ++K+P  S+IEV  
Sbjct: 470 AERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKR 529

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            I+   + ++ + +  E+   L  ++ +IK  GY   T+ V +D+ EEEKE  +  HS K
Sbjct: 530 KIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGK 589

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LAVAFGLI+TS+   I++  NLR+C DCH  +K +SK  NREI++RD  RFH FKDG CS
Sbjct: 590 LAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCS 649

Query: 578 CKDYW 582
           C DYW
Sbjct: 650 CGDYW 654



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 158/349 (45%), Gaps = 26/349 (7%)

Query: 61  AHALFRQINA---PS----TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF 113
           +H  F  +NA   P+    +N+ + +++ L        AV    Q+L         T   
Sbjct: 24  SHVSFVSLNASGYPTKDIKSNNNDDLIQSLCRGGNLKQAV----QLLCCEPNPTKKTFEL 79

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
            + +C    +L + + +H  ++  G   D  L T L+++Y  +G +  A KVFDE   + 
Sbjct: 80  LINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKT 139

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG----HLGAWKEG 229
           I  WNA+   LA  +   + + L+ +M   G+   N  T    L AC      +   ++G
Sbjct: 140 IFVWNAIFRALAMASRGEDLLVLYGQMNWIGI-PSNRFTYTYVLKACVVSELSICPLRKG 198

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
            +IH +I     + +V V   ++D+YA+ G +  A  VF  +   K++V+W+ M+  +A 
Sbjct: 199 KEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMP-DKNIVSWSAMIACYAK 257

Query: 290 HGDGPRALELFEQMGRAGVK--PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM 347
           +    +ALELF+ M        P+ ++ ++ L AC     ++ G  +   +   G+   +
Sbjct: 258 NEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTL 317

Query: 348 KHYGSVVDLLGRAGRL---QEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
               +++ + GR G +   Q   D +K      D++ W +L+    ++G
Sbjct: 318 PVLNTLITMYGRCGEISTGQRVFDYMKK----RDVISWNSLISIYGMHG 362


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/580 (37%), Positives = 347/580 (59%), Gaps = 37/580 (6%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F S  F V++ ++  YA      +A A  +F ++       ++ ++ G   S    +A+L
Sbjct: 153 FDSDPF-VQTGLVRMYA--ACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALL 209

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
            + +M   +   D +  S  L AC R   L     IH  ++ +  + D  L + L+ +YA
Sbjct: 210 LFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYA 269

Query: 155 -------------------------------KVGEIVSAKKVFDEMGVRDIASWNALIAG 183
                                          K+G+I +A+ VF++M  +D+  W+A+I+G
Sbjct: 270 SCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISG 329

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            A+ +   EA++LF  M+  G+ KP++VT+L  + AC HLGA  +   IH ++ +     
Sbjct: 330 YAESDSPQEALNLFNEMQSLGI-KPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGG 388

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            + + NA+I+MYAKCG L++A  +FD +  RK++++W  M+ AFA+HGD   AL  F QM
Sbjct: 389 ALPINNALIEMYAKCGSLERARRIFDKMP-RKNVISWTCMISAFAMHGDAGSALRFFHQM 447

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGR 362
               ++P+ ++++  L AC+HAGLV++G ++F SM N   + P   HYG +VDL GRA  
Sbjct: 448 EDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANL 507

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L+EA ++V+++ +  ++++W +L+ AC+++G++E+ E A+++L+E+  ++ G  V LSN+
Sbjct: 508 LREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNI 567

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YA   RW+DVG+VRK MK++ + K  G S  E+   IH+F  +D+SH    EIYEKL E+
Sbjct: 568 YAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEV 627

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
           + K+K  GY+  T  +L D+ EEEK+  + +HSEKLA+ +GL+     + I++ KNLR+C
Sbjct: 628 VSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLRVC 687

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH  IKL SKVY REI+VRDR RFH +KDG CSCKDYW
Sbjct: 688 EDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 199/411 (48%), Gaps = 35/411 (8%)

Query: 14  NGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPST 73
           + A S  H+KQ+ A +  +   +S    V+  +I   ALS  + L YA ++F  I  P T
Sbjct: 31  SSATSLTHLKQVHAQILRSKLDRSTSLLVK-LVISSCALS--SSLDYALSVFNLIPKPET 87

Query: 74  NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH 133
           +  N  LR L+ S +P   +L Y +M       D  +    LKA +RV +L E L+IH  
Sbjct: 88  HLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGL 147

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
             + GF +D  + T L+ +YA  G I  A+ +FD+M  RD+ +W+ +I G  Q  L ++A
Sbjct: 148 AAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDA 207

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253
           + LF+ MK   V +P+E+ +   L+ACG  G    G  IH++I E  + ++  + +A++ 
Sbjct: 208 LLLFEEMKNYNV-EPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVT 266

Query: 254 MYAKCGLLDKAFEVFD------------------------------NIKCRKSLVTWNTM 283
           MYA CG +D A  +F+                              N   +K LV W+ M
Sbjct: 267 MYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAM 326

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +  +A       AL LF +M   G+KPD V+ L+ + AC H G +D    +   +   G 
Sbjct: 327 ISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGF 386

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
              +    +++++  + G L+ A  I   +    +++ W  ++ A  ++GD
Sbjct: 387 GGALPINNALIEMYAKCGSLERARRIFDKMPR-KNVISWTCMISAFAMHGD 436


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/584 (38%), Positives = 346/584 (59%), Gaps = 15/584 (2%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQ 67
           L +C++  A++ +H   +++ L     F ++L  +     +  A  P  +L+YA  +F +
Sbjct: 38  LPQCTTLRALAQLHAAAVKSGLQAHPAFVTRLLTL---CTDQGAAKP-AQLSYARQVFDR 93

Query: 68  INAPSTND-FNAVLRGLAHSS-----KPT--NAVLWYRQMLRGSHRSDALTCSFALKACA 119
           I  P     +N +LRG A  S     +P    A   + +ML      D  T    LKACA
Sbjct: 94  IPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACA 153

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
              A  E  Q H   ++ G      +  TL+++YA+ G+  +A+ +F  +    + S+NA
Sbjct: 154 AARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNA 213

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I    + +   EA+ LF+ M+ +G+ K   VT++  L+AC  LGA + G  IHEY+R+ 
Sbjct: 214 MITAAVRSSRPGEALVLFREMQAKGL-KLTSVTLISVLSACALLGALELGRWIHEYVRKV 272

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
           +LD  V V  A+IDMY KCG L+ A  VF  ++ R     W+ M++A+A H  G  A+ L
Sbjct: 273 QLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQ-AWSVMIVAYANHSYGREAISL 331

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           FE+M + G+KPDDV++L  L AC+H+GLV +G++ F+SM   G+ P +KHYG V DLL R
Sbjct: 332 FEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMREFGLVPGIKHYGCVADLLAR 391

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           +G+L  A + +  + +    +LW+TLL AC   GD ++ +    +++E+  ++ GD+V+ 
Sbjct: 392 SGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIF 451

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SNL A   RW+++ RVRK M  + V KVPG S IEV   +H+FF  D  H K  +    +
Sbjct: 452 SNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMV 511

Query: 480 DEIMFKIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           D ++ ++K  GY   TS V H ++GEEEK  +L YHSEKLA++FGL++TS  T+++V KN
Sbjct: 512 DGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVKN 571

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH + KL+S V+NR II+RD  RFH F+DG CSC DYW
Sbjct: 572 LRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/520 (37%), Positives = 316/520 (60%), Gaps = 3/520 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F  +       +N ++ G A +      +   R+M   + + D+ T S  L   A  + 
Sbjct: 256 IFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVD 315

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           + +  +IH   +R G  A+  + ++L+D+YAK   +V + +VF  +  RD  SWN++IAG
Sbjct: 316 ISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAG 375

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q  L  E +  F++M M  + KP   +    + AC HL     G ++H YI     D 
Sbjct: 376 CVQNGLFDEGLKFFRQMLMAKI-KPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDE 434

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N+ + ++++DMYAKCG +  A ++FD ++ R  +V+W  M+M  A+HG    A+ELFEQM
Sbjct: 435 NIFIASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGCALHGHALDAIELFEQM 493

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGR 362
              G++P+ V+++A L AC+HAGLVD+  + FNSM  + G+ P ++HY +V DLLGRAGR
Sbjct: 494 KTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGR 553

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L+EA D +  + +G    +W TLL AC+++ +V+MAE  + +++E+   N G ++LL+N+
Sbjct: 554 LEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANI 613

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           Y+A  RW +  + R +++   ++K P  S+IEV   ++ F   D+SH  + +I E ++ +
Sbjct: 614 YSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVL 673

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
           M  +++ GY   TS V HD+ EE+K+  +C HSE+LA+ FG+I+T   T+I+V KNLR+C
Sbjct: 674 MELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVC 733

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH   K ISK+  REI+VRD  RFH FK+G CSC DYW
Sbjct: 734 TDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 122/249 (48%), Gaps = 4/249 (1%)

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           LG  + D+   +  + S +K+F+ M  +D+ SWN +IAG A+  L  E + + + M    
Sbjct: 237 LGQQIKDISHSMS-VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGAN 295

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
           + KP+  T+   L          +G +IH     + LD  V V +++IDMYAKC  +  +
Sbjct: 296 L-KPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDS 354

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
           + VF  +  R   ++WN+++     +G     L+ F QM  A +KP   S+ + + AC H
Sbjct: 355 YRVFTLLTERDG-ISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAH 413

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
              +  G +L   +   G   N+    S+VD+  + G ++ A  I   + +  DMV W  
Sbjct: 414 LTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRL-RDMVSWTA 472

Query: 385 LLGACQLYG 393
           ++  C L+G
Sbjct: 473 MIMGCALHG 481



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 68/344 (19%), Positives = 134/344 (38%), Gaps = 27/344 (7%)

Query: 53  SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           S +N L  +  LF  ++ P    + +V+R       P  ++  +  ML      D     
Sbjct: 53  SHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFP 112

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV-------GEIVSAKKV 165
             LKACA ++ L     +H +++R G   D   G  L+++Y+K+        + + A +V
Sbjct: 113 SVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQV 172

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
            DEM  R  +   A +    QG                   K +++       +C     
Sbjct: 173 LDEMTERTRSVRTASVLVGNQGR------------------KVSDIEAFNYDVSCRSREF 214

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
             +  +I    R E  +M        I   +    +D   ++F+ +   K LV+WNT++ 
Sbjct: 215 EAQVLEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMP-EKDLVSWNTIIA 273

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
             A +G     L +  +MG A +KPD  +  + L        +  G  +       G+  
Sbjct: 274 GNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDA 333

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
            +    S++D+  +  R+ ++  +   ++   D + W +++  C
Sbjct: 334 EVYVASSLIDMYAKCTRVVDSYRVFTLLT-ERDGISWNSIIAGC 376



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 5/166 (3%)

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD-VYAKVGE 158
           +R    ++AL  S  L+    + +  +  Q+H+ VL+  F A +L   +LL  +Y+ +  
Sbjct: 1   MRSPTSTEALVNSL-LRNPLSIKSRSQAQQLHAQVLK--FQASSLCNLSLLLSIYSHINL 57

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           +  + ++F+ +      +W ++I       L  +++  F  M   G++ P+       L 
Sbjct: 58  LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLY-PDHNVFPSVLK 116

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
           AC  L     G+ +H YI    LD ++   NA+++MY+K   L K+
Sbjct: 117 ACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKS 162


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/560 (39%), Positives = 337/560 (60%), Gaps = 8/560 (1%)

Query: 24  QLQAHLTTTGQFQSKLFPVRS-KIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           QL AH+    +F  +  P+ S  +I  Y+ + L    ++  +F +    S+  +++V+  
Sbjct: 46  QLHAHIL---KFGLQTIPLVSHNLINLYSKTQLP--LFSLQVFDETPKKSSTTWSSVISA 100

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A +  P  A+ ++R+ML    R D      A KAC  +        +H   ++ G+  D
Sbjct: 101 FAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCD 160

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G++L+D+YAK GEI  A+ +FDEM  R++ SW+ +I G AQ +   EA+ LFK+  +
Sbjct: 161 VFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALI 220

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           E V   N+ T    +  C      + G  IH    +   D +  V +A+I +Y+KCG+++
Sbjct: 221 EDV-DVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIE 279

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A++VFD I  R +L  WN+M++A A H    R   LFE+MG  G+KP+ +S+L+ L AC
Sbjct: 280 GAYQVFDEIPTR-NLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYAC 338

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           +HAGLV+ G   F+ M + G++P  +HY S+VDLLGRAG+LQEA  ++K + M     +W
Sbjct: 339 SHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVW 398

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
             LL  C+++ D EMA   + +++EM S++ G  VLLSN YAA  R+++  R+RK +++R
Sbjct: 399 GALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDR 458

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            VKK  G S++E G  +H F   D+SH KW EIYEKL+E+  ++++ GY A TS VL  +
Sbjct: 459 GVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAV 518

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
             EEK   + YHSE+LA+AFGLI+      I+V KNLR+C DCH  IK +SK   R +IV
Sbjct: 519 DGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIV 578

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFHRF+DG CSC DYW
Sbjct: 579 RDNNRFHRFEDGKCSCGDYW 598



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 138/275 (50%), Gaps = 3/275 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L +  R  +L + LQ+H+H+L+ G     L+   L+++Y+K    + + +VFDE   +  
Sbjct: 32  LLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSS 91

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            +W+++I+  AQ      A+  F+RM  +GV +P++     A  ACG L     G  +H 
Sbjct: 92  TTWSSVISAFAQNEAPLLALQFFRRMLNDGV-RPDDHIYPSATKACGFLRRSDVGKSVHC 150

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +     +V V ++++DMYAKCG +  A  +FD +   +++V+W+ M+  +A   DG 
Sbjct: 151 LAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP-ERNVVSWSGMIYGYAQLDDGV 209

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            AL LF+Q     V  +D ++ + +  C+ +  ++ G  +           +     +++
Sbjct: 210 EALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALI 269

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
            L  + G ++ A  +   +    ++ LW ++L AC
Sbjct: 270 SLYSKCGVIEGAYQVFDEIPT-RNLGLWNSMLIAC 303



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 3/206 (1%)

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           +  F+ N   +   L +     + ++G ++H +I +  L    +V + +I++Y+K  L  
Sbjct: 18  QNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPL 77

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            + +VFD    +KS  TW++++ AFA +     AL+ F +M   GV+PDD  Y +A  AC
Sbjct: 78  FSLQVFDETP-KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKAC 136

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
                 D G  +       G   ++    S+VD+  + G + +A  +   +    ++V W
Sbjct: 137 GFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPE-RNVVSW 195

Query: 383 QTLL-GACQLYGDVEMAEIASRKLVE 407
             ++ G  QL   VE   +  + L+E
Sbjct: 196 SGMIYGYAQLDDGVEALTLFKQALIE 221


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/581 (38%), Positives = 348/581 (59%), Gaps = 14/581 (2%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
            +LLQ C  + A++    KQL A     G   ++   + +K++  YA+S  N L  A  L
Sbjct: 51  TSLLQSCIDSKALNPG--KQLHAQFYHLGIAYNQ--DLATKLVHLYAVS--NSLLNARNL 104

Query: 65  FRQINAPSTNDF--NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           F +I  P  N F  N ++RG A +    NA++ Y +ML    R D  T  F LKAC+ + 
Sbjct: 105 FDKI--PKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALS 162

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           A+ E   IH +V++ G+  D  +G  L+D+YAK G ++ A +VFD++ VRD   WN+++A
Sbjct: 163 AIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLA 222

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
             AQ     E++ L + M   GV +P E T++  +++   +     G +IH +       
Sbjct: 223 AYAQNGHPDESISLCREMAANGV-RPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQ 281

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            N  V  A+IDMYAKCG +  A  +F+ ++  K +V+WN ++  +A+HG    AL+LF++
Sbjct: 282 SNDKVKTALIDMYAKCGSVKVALALFERLR-EKRVVSWNAIITGYAMHGLAVGALDLFDK 340

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAG 361
           M R   +PD ++++  L AC+   L+D+G  L+N M  + G+ P ++HY  ++DLLG  G
Sbjct: 341 M-RKEDRPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCG 399

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           +L EA D+++++S+  D  +W  LL +C+++G+VE+AE+A  KL+E+  ++ G++V+L+N
Sbjct: 400 QLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILAN 459

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YA   +W+ V ++R+ M ++ +KK    S+IEV   ++ F   D SH     IY +L  
Sbjct: 460 MYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKR 519

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           +   + E GYA  T  V HD+ E+EK + +C HSE+LA+AFGLISTS  T + + KNLRI
Sbjct: 520 LEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRI 579

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH  IK ISK+  REI VRD  R+H FK G CSC D+W
Sbjct: 580 CEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/545 (40%), Positives = 330/545 (60%), Gaps = 9/545 (1%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           +K+I  Y    L  +  A  +F +    +   +NA+ R LA        +  Y QM    
Sbjct: 117 TKLINMYY--ELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIG 174

Query: 104 HRSDALTCSFALKACA----RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
             SD  T +F LKAC      V  L +  +IH+H+LRHG+ A+  + TTLLDVYAK G +
Sbjct: 175 IPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSV 234

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK-PNEVTVLGALA 218
             A  VF  M  ++  SW+A+IA  A+  +  +A++LF+ M +E     PN VT++  L 
Sbjct: 235 SYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQ 294

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC  L A ++G  IH YI    LD  + V NA+I MY +CG +     VFDN+K R  +V
Sbjct: 295 ACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNR-DVV 353

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +WN+++  + +HG G +A+++FE M   G  P  +S++  L AC+HAGLV++G  LF SM
Sbjct: 354 SWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESM 413

Query: 339 -ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
            +   + P M+HY  +VDLLGRA RL EA  +++ +       +W +LLG+C+++ +VE+
Sbjct: 414 LSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVEL 473

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
           AE AS  L E+   N G++VLL+++YA  + W +   V K ++ R ++K+PG S+IEV  
Sbjct: 474 AERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKR 533

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            ++ F + D+ + +  EI+  L ++  ++K  GY   T+ VL+D+ EEEKE  +  HSEK
Sbjct: 534 KVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEK 593

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LAVAFGLI+T +  +I++ KNLR+C DCH V K ISK  NREI+VRD  RFH FKDG CS
Sbjct: 594 LAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCS 653

Query: 578 CKDYW 582
           C DYW
Sbjct: 654 CGDYW 658



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 146/304 (48%), Gaps = 15/304 (4%)

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           +CA+  +L + L +H  ++  GF  D  L T L+++Y ++G I  A+KVFDE   R I  
Sbjct: 87  SCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYV 146

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG----HLGAWKEGDKI 232
           WNAL   LA      E +DL+ +M   G+   +  T    L AC      +   ++G +I
Sbjct: 147 WNALFRALAMVGCGKELLDLYVQMNWIGI-PSDRFTYTFVLKACVVSELSVSPLQKGKEI 205

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H +I     + N+ V   ++D+YAK G +  A  VF  +   K+ V+W+ M+  FA +  
Sbjct: 206 HAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMP-TKNFVSWSAMIACFAKNEM 264

Query: 293 GPRALELFEQMGRAG--VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
             +ALELF+ M        P+ V+ +  L AC     ++ G  +   +   G+   +   
Sbjct: 265 PMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVL 324

Query: 351 GSVVDLLGRAGRL---QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
            +++ + GR G +   Q   D +K+     D+V W +L+    ++G  + A      ++ 
Sbjct: 325 NALITMYGRCGEILMGQRVFDNMKN----RDVVSWNSLISIYGMHGFGKKAIQIFENMIH 380

Query: 408 MGSN 411
            GS+
Sbjct: 381 QGSS 384



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 12/224 (5%)

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N LI  L +G    +A+ L           P + T    + +C    +  +G  +H  + 
Sbjct: 51  NQLIQSLCKGGNLKQAIHLLCCEP-----NPTQRTFEHLICSCAQQNSLSDGLDVHRRLV 105

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
               D +  +   +I+MY + G +D+A +VFD  +  +++  WN +  A A+ G G   L
Sbjct: 106 SSGFDQDPFLATKLINMYYELGSIDRARKVFDETR-ERTIYVWNALFRALAMVGCGKELL 164

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGL----VDDGVRLFNSMANCGVKPNMKHYGSV 353
           +L+ QM   G+  D  +Y   L AC  + L    +  G  +   +   G + N+    ++
Sbjct: 165 DLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTL 224

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
           +D+  + G +  A  +  ++    + V W  ++ AC    ++ M
Sbjct: 225 LDVYAKFGSVSYANSVFCAMPT-KNFVSWSAMI-ACFAKNEMPM 266


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/532 (40%), Positives = 331/532 (62%), Gaps = 12/532 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           + ALF          +N ++   + S + + A+ ++R M+      D +T +  L AC+ 
Sbjct: 167 SKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 226

Query: 121 VLALFETLQIHSHVLRHG-FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           +  L    +IH++VLR+   + ++ +G+ L+D+Y    ++ S ++VFD +  R I  WNA
Sbjct: 227 LERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNA 286

Query: 180 LIAGLAQGNLASEAVDLFKRM-KMEGVFKPNEVTVLGALAACGH-LGAWKEGDKIHEYIR 237
           +I+G A+  L  +A+ LF  M K+ G+  PN  T+   + AC H L A  +G +IH Y  
Sbjct: 287 MISGYARNGLDEKALILFIEMIKVAGLL-PNTTTMASVMPACVHSLAAIAKGKEIHAYAI 345

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
              L  ++ V +A++DMYAKCG L+ +  VF+ +   K+++TWN ++MA  +HG G  AL
Sbjct: 346 RNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHGKGEEAL 404

Query: 298 ELFEQM----GRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYG 351
           ELF+ M    GR G  KP++V+++    AC+H+GL+ +G+ LF  M  + GV+P   HY 
Sbjct: 405 ELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYA 464

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
            VVDLLGRAG+L+EA ++V ++    D V  W +LLGAC+++ +VE+ E+A++ L+ +  
Sbjct: 465 CVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEP 524

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
           N    +VLLSN+Y++   W+    VRK M+   VKK PG S+IE    +HKF   D SH 
Sbjct: 525 NVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHP 584

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           +  +++  L+ +  K+++ GY   TSCVLH++ E+EKEN LC HSEKLA+AFG+++T   
Sbjct: 585 QSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPG 644

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           T+I+V KNLR+C DCH   K ISK+  REIIVRD  RFH FK+G CSC DYW
Sbjct: 645 TTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 171/363 (47%), Gaps = 28/363 (7%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIH 131
           ST  +   LR    S+    A+  Y +M     R D       LKA + +  L    QIH
Sbjct: 56  STASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIH 115

Query: 132 SHVLRHGF------LADALLG---------------TTLLDVYAKVGEIVSAKKVFDEMG 170
           +  ++ G+      +A+ L+                  L+ +YAK+G +  +K +F+   
Sbjct: 116 AAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFV 175

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            RD+ SWN +I+  +Q +  SEA+  F+ M +EGV + + VT+   L AC HL     G 
Sbjct: 176 DRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGV-ELDGVTIASVLPACSHLERLDVGK 234

Query: 231 KIHEYI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
           +IH Y+ R   L  N  V +A++DMY  C  ++    VFD+I  R+ +  WN M+  +A 
Sbjct: 235 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRR-IELWNAMISGYAR 293

Query: 290 HGDGPRALELFEQMGR-AGVKPDDVSYLAALCACNHA-GLVDDGVRLFNSMANCGVKPNM 347
           +G   +AL LF +M + AG+ P+  +  + + AC H+   +  G  +        +  ++
Sbjct: 294 NGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDI 353

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASRKLV 406
               ++VD+  + G L  +  +   +    +++ W  L+ AC ++G  E A E+    + 
Sbjct: 354 TVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHGKGEEALELFKNMVA 412

Query: 407 EMG 409
           E G
Sbjct: 413 EAG 415


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/540 (39%), Positives = 332/540 (61%), Gaps = 5/540 (0%)

Query: 46  IIEFYALSPLN-ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL-WYRQMLRGS 103
           +I  YA   ++  +  A  +F QI   +   + A++ G           L  +R M+   
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH 371

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
              +  T S  LKACA + AL    Q+ +H ++ GF +   +  +L+ +YA+ G I  A+
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR 431

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           K FD +  +++ S+N +I   A+   + EA++LF  ++ +G+   +  T    L+    +
Sbjct: 432 KAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGM-GASAFTFASLLSGAASI 490

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
           G   +G++IH  + +  L +N  VCNA+I MY++CG ++ AF+VF++++ R ++++W ++
Sbjct: 491 GTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR-NVISWTSI 549

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCG 342
           +  FA HG   +ALELF +M   GV+P+ V+Y+A L AC+H GLV++G + F SM    G
Sbjct: 550 ITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHG 609

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           V P M+HY  +VD+LGR+G L EA   + S+    D ++W+T LGAC+++G++E+ + A+
Sbjct: 610 VIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAA 669

Query: 403 RKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKF 462
           + ++E   ++   ++LLSNLYA+  +WD+V  +RKAMK +++ K  G S++EV   +HKF
Sbjct: 670 KMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKF 729

Query: 463 FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
           +  D SH K  EIY++L  +  KIK+ GY      VLHD+ EE+KE  L  HSEK+AVAF
Sbjct: 730 YVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAF 789

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           GLISTS+   I+VFKNLRIC DCH  IK IS    REIIVRD  RFH  KDG CSC +YW
Sbjct: 790 GLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 178/359 (49%), Gaps = 11/359 (3%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  +F ++   +   +  ++  L        A+  + +M+   +  D  T S  + 
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVIS 279

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV---GEIVSAKKVFDEMGVRD 173
           ACA +  L    Q+HS  +RHG   D  +G  L+++YAK    G + +A+K+FD++   +
Sbjct: 280 ACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN 339

Query: 174 IASWNALIAGLAQ-GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           + SW A+I G  Q G    EA+DLF+ M +  V  PN  T    L AC +L A + G+++
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI-PNHFTFSSTLKACANLAALRIGEQV 398

Query: 233 HEYIREERLDMNVVVC--NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
             +    +L  + V C  N++I MYA+ G +D A + FD I   K+L+++NT++ A+A +
Sbjct: 399 --FTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFD-ILFEKNLISYNTVIDAYAKN 455

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
            +   ALELF ++   G+     ++ + L      G +  G ++   +   G+K N    
Sbjct: 456 LNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVC 515

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            +++ +  R G ++ A  + + +    +++ W +++     +G    A     K++E G
Sbjct: 516 NALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFHKMLEEG 573



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 149/297 (50%), Gaps = 8/297 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++A++   A+++    A+L +  M+   +  +    + A +AC+    +     I   V+
Sbjct: 136 WSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVV 195

Query: 136 RHGFL-ADALLGTTLLDVYAK-VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           + G+L +D  +G  L+D++ K  G++VSA KVF++M  R+  +W  +I  L Q   A EA
Sbjct: 196 KTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEA 255

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253
           +DLF  M + G ++P+  T+ G ++AC ++     G ++H       L ++  V   +I+
Sbjct: 256 IDLFLEMILSG-YEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLIN 314

Query: 254 MYAKC---GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD-GPRALELFEQMGRAGVK 309
           MYAKC   G +  A ++FD I    ++ +W  M+  +   G     AL+LF  M    V 
Sbjct: 315 MYAKCSVDGSMCAARKIFDQI-LDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI 373

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           P+  ++ + L AC +   +  G ++F      G         S++ +  R+GR+ +A
Sbjct: 374 PNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDA 430



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 164/382 (42%), Gaps = 50/382 (13%)

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
           +GSH  D  T S  LK C R  +      +H  + +     D++   +L+ +Y+K G+  
Sbjct: 60  QGSH-PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWE 118

Query: 161 SAKKVFDEMG-VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
            A  +F  MG  RD+ SW+A+++  A  N+   A+  F  M +E  + PNE     A  A
Sbjct: 119 KATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM-IENGYYPNEYCFAAATRA 177

Query: 220 CGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKC-GLLDKAFEVFDNIKCRKSL 277
           C        GD I  + ++   L  +V V   +IDM+ K  G L  AF+VF+ +  R + 
Sbjct: 178 CSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA- 236

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA------------ 325
           VTW  M+      G    A++LF +M  +G +PD  +    + AC +             
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 326 ----GLVDD---GVRLFNSMANCGVKPNM----KHYGSVVD------------LLGRAGR 362
               GL  D   G  L N  A C V  +M    K +  ++D             + + G 
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356

Query: 363 LQEACDIVKSVSMG---TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG--SNNCGDFV 417
            +EA D+ + + +     +   + + L AC     + + E      V++G  S NC    
Sbjct: 357 DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 418 LLSNLYAAYERWDDVGRVRKAM 439
           L+S +YA   R DD    RKA 
Sbjct: 417 LIS-MYARSGRIDD---ARKAF 434



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 2/163 (1%)

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           LI  +  G L  +A+   + M  +G   P+  T    L  C    ++  G  +HE + + 
Sbjct: 38  LIQEINNGRL-HKAISTLEHMVHQGS-HPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQS 95

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            L ++ V  N++I +Y+KCG  +KA  +F  +   + L++W+ MV  FA +  G RAL  
Sbjct: 96  DLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLT 155

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           F  M   G  P++  + AA  AC+ A  V  G  +F  +   G
Sbjct: 156 FVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTG 198


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/551 (40%), Positives = 321/551 (58%), Gaps = 34/551 (6%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF ++       ++A++     +     A++ +++M       D +     L AC+R+L 
Sbjct: 245 LFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLV 304

Query: 124 LFETLQIHSHVLRHGF-----LADALLG--------------------------TTLLDV 152
           +     +H  V++ G      L +AL+                            +++  
Sbjct: 305 VITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISG 364

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           Y K GEI  A+ +FD M  +D  SW+A+I+G AQ +  +E + LF+ M++EG  KP+E  
Sbjct: 365 YVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGT-KPDETI 423

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           ++  ++AC HL A  +G  IH YIR+  L +N+++   +I+MY K G ++ A EVF  ++
Sbjct: 424 LVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLE 483

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K + TWN +++  A++G   ++L+ F +M   GV P++++++A L AC H GLVD+G 
Sbjct: 484 -EKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGH 542

Query: 333 RLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           R FNSM     + PN+KHYG +VDLLGRAG L+EA ++++S+ M  D+  W  LLGAC+ 
Sbjct: 543 RHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKK 602

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           YGD E  E   RKLVE+  ++ G  VLLSN+YA+   W DV  VR  M+   V K PG S
Sbjct: 603 YGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCS 662

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
            IE  G +H+F   DK+H +   I   LDE+  K+K  GYA  T  V  DI EEEKE  L
Sbjct: 663 MIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTL 722

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
             HSEKLA+AFGLI+    T I++ KNLRIC DCH   KLISK +NREI+VRDR RFH F
Sbjct: 723 FRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHF 782

Query: 572 KDGACSCKDYW 582
           K G+CSC DYW
Sbjct: 783 KQGSCSCMDYW 793



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 137/258 (53%), Gaps = 8/258 (3%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E+  A ALF  +       ++A++ G A   + T  ++ +++M     + D       + 
Sbjct: 370 EIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVIS 429

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC  + AL +   IH+++ ++G   + +LGTTL+++Y K+G +  A +VF  +  + +++
Sbjct: 430 ACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVST 489

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK-IHEY 235
           WNALI GLA   L  +++  F  MK  GV  PNE+T +  L AC H+G   EG +  +  
Sbjct: 490 WNALILGLAMNGLVDKSLKTFSEMKEHGV-TPNEITFVAVLGACRHMGLVDEGHRHFNSM 548

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           I+E ++  N+     ++D+  + G+L +A E+ +++     + TW  ++ A   +GD   
Sbjct: 549 IQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDN-- 606

Query: 296 ALELFEQMGRAGVK--PD 311
             E  E++GR  V+  PD
Sbjct: 607 --ETGERIGRKLVELHPD 622



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 178/395 (45%), Gaps = 49/395 (12%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           L   LQKC +          Q+ + +  +G F+       S++++F    P   +  ++ 
Sbjct: 29  LETHLQKCQNIK-----QFNQILSQMILSGFFKDSF--AASRLLKFSTELPFININQSYQ 81

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F  I  P+    N +++G    + P  A+  Y+ ML  +  +D  T     ++C+  LA
Sbjct: 82  IFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLA 141

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
            F+   I  HVL+ GF +D  +  TL+++YA  G +  A+KVFD   V D+ SWN+++AG
Sbjct: 142 EFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAG 201

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
                   EA D++ RM                                      ER   
Sbjct: 202 YVLVGNVEEAKDVYDRMP-------------------------------------ER--- 221

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           NV+  N++I ++ K G +++A ++F+ +K +K LV+W+ ++  +  +     AL LF++M
Sbjct: 222 NVIASNSMIVLFGKKGNVEEACKLFNEMK-QKDLVSWSALISCYEQNEMYEEALILFKEM 280

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
              G+  D+V  L+ L AC+   +V  G  +   +   G++  +    +++ +      +
Sbjct: 281 NANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEV 340

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             A  +  S S   D + W +++      G++E A
Sbjct: 341 VTAQKLF-SESCCLDQISWNSMISGYVKCGEIEKA 374



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 124/300 (41%), Gaps = 49/300 (16%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVG--EIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
           QI S ++  GF  D+   + LL    ++    I  + ++F  +   +    N ++ G  Q
Sbjct: 44  QILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNTMMKGYMQ 103

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
            N   +A+ ++K M +E     +  T      +C    A  +G  I +++ +   D +V 
Sbjct: 104 RNSPCKAIWVYKFM-LESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVY 162

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           + N +I+MYA CG L  A +VFD       +V+WN+M+  + + G+   A +++++M   
Sbjct: 163 IQNTLINMYAVCGNLSDARKVFDGSSVL-DMVSWNSMLAGYVLVGNVEEAKDVYDRMPER 221

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            V   +                                       S++ L G+ G ++EA
Sbjct: 222 NVIASN---------------------------------------SMIVLFGKKGNVEEA 242

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN--CGDFVLLSNLYA 424
           C +   +    D+V W  L+     Y   EM E A     EM +N     + V+LS L A
Sbjct: 243 CKLFNEMKQ-KDLVSWSALISC---YEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSA 298


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/567 (38%), Positives = 342/567 (60%), Gaps = 13/567 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYAL--SPLNELAYAHALFRQINAPSTNDFNA 78
           H K ++  ++ T  F+  LF V + +I  YA   SP N    A  +F ++   +   ++A
Sbjct: 129 HGKHVRESISETS-FELDLF-VGTALITMYARCRSPEN----AAQVFGRMKQKNLITWSA 182

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           ++   A       A+ ++R M +     + +T    L        L E  +IH  +  HG
Sbjct: 183 IITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHG 242

Query: 139 FLADALLGTTLLDVYAK--VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
                 +   L++VY +   GE+  A+ +  EM  + I +WN LI G      + EA++ 
Sbjct: 243 LDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALET 302

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           ++R+++E +   ++VT +  L AC    +  EG  IH    E  LD +V+V NA+ +MY+
Sbjct: 303 YQRLQLEAI-PVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYS 361

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG ++ A  +FD++  R S V+WN M+ A+A HG+    L+L  +M + GVK + ++++
Sbjct: 362 KCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFV 420

Query: 317 AALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           + L +C+HAGL+ +G + F+S+  + G++   +HYG +VDLLGRAG+LQEA   +  +  
Sbjct: 421 SVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPS 480

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
             ++V W +LLGAC+++ D++  ++A+RKL+E+   N    V+LSN+Y+    W +  ++
Sbjct: 481 EPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKL 540

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           R+AM +R VKKVPG S I+V   +H+F   D SH +  EIY+K++E+ F ++E GY   T
Sbjct: 541 RRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDT 600

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
             VLHD+ EE+KE+ L YHSEKLA+AFGLIST E +S+ +FKNLR+C DCH   K ISK+
Sbjct: 601 KMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKI 660

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
             REI+VRD  RFH F+DG+CSCKDYW
Sbjct: 661 TGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 164/354 (46%), Gaps = 5/354 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  +F  +   S   +N+++   + S +   A   +++M     R D +T    L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C     L     +   +    F  D  +GT L+ +YA+     +A +VF  M  +++ +W
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITW 180

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           +A+I   A      EA+  F+ M+ EG+  PN VT +  L         +E  +IH  I 
Sbjct: 181 SAIITAFADHGHCGEALRYFRMMQQEGIL-PNRVTFISLLNGFTTPSGLEELSRIHLLIT 239

Query: 238 EERLDMNVVVCNAVIDMYAKC--GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           E  LD    + NA++++Y +C  G LD A  +   +   + +  WN ++  + +HG    
Sbjct: 240 EHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMD-EQQITAWNVLINGYTLHGRSRE 298

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           ALE ++++    +  D V++++ L AC  +  + +G  + ++   CG+  ++    ++ +
Sbjct: 299 ALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTN 358

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           +  + G ++ A  I  S+ + +  V W  +L A   +G+ E      RK+ + G
Sbjct: 359 MYSKCGSMENARRIFDSMPIRS-AVSWNGMLQAYAQHGESEEVLKLIRKMEQEG 411



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 5/266 (1%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           IHS V       D  + T L++ Y K G +  A+KVFD M  R + +WN++I+  +    
Sbjct: 32  IHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISER 91

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
           + EA  +F+RM+ EG  + + VT L  L AC +    + G  + E I E   ++++ V  
Sbjct: 92  SGEAFFIFQRMQHEGE-RCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGT 150

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           A+I MYA+C   + A +VF  +K +K+L+TW+ ++ AFA HG    AL  F  M + G+ 
Sbjct: 151 ALITMYARCRSPENAAQVFGRMK-QKNLITWSAIITAFADHGHCGEALRYFRMMQQEGIL 209

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR--AGRLQEAC 367
           P+ V++++ L        +++  R+   +   G+        ++V++ GR   G L  A 
Sbjct: 210 PNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAE 269

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYG 393
            I++ +     +  W  L+    L+G
Sbjct: 270 VILQEMD-EQQITAWNVLINGYTLHG 294


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/581 (37%), Positives = 342/581 (58%), Gaps = 11/581 (1%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           +++L +C S  A+     +++  H+  T    S    +R+++I  Y  +  + L  A  +
Sbjct: 66  DSILNECVSQRAIREG--QRVHTHMIKTCYLPSVY--LRTRLIVLY--NKCDCLGDARGM 119

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F ++   +   + A++   +       A+  + +MLR     +  T +  L +C   L  
Sbjct: 120 FDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGF 179

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               QIHS  ++  + +   +G++LLD+YAK G I  A  VF  +  RD+ +  A+I+G 
Sbjct: 180 ETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGY 239

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           AQ  L  EA+ LF+++++EG+   N VT    L A   L A   G ++H ++        
Sbjct: 240 AQMGLDEEALKLFRQLQIEGM-NSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSY 298

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           VV+ N++IDMY+KCG +  A  +FD++   ++ ++WN M++ ++ HG     LELF+ M 
Sbjct: 299 VVLLNSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAMLVGYSKHGMAREVLELFKLMR 357

Query: 305 RAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC--GVKPNMKHYGSVVDLLGRAG 361
               VKPD ++YLA L  C+H  L D G+ +F +M N   G++P++ HYG VVDLLGRAG
Sbjct: 358 EENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAG 417

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           R++EA D +K +       +W +LLG+C+++ DVE+  I  +KL+E+   N G++V+LSN
Sbjct: 418 RVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSN 477

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           LYA+  +W+D+  +R  M+ + V K PG S++E+  ++H F  SD +H +  E+  K+ E
Sbjct: 478 LYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKE 537

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           +  K KE GY    SCVL+D+ EE+KE  L  HSEKLA+AFGLI+T E T+I+V KNLRI
Sbjct: 538 LSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRI 597

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH   K +S++Y R +I+RD+ RFH    G CSC DYW
Sbjct: 598 CVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/525 (40%), Positives = 330/525 (62%), Gaps = 13/525 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACA 119
           A  LF +I       +NA++ G   +     A+  +++M+  ++ R D  T    + ACA
Sbjct: 174 AQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACA 233

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           +  ++     +HS +  HGF ++  +   L+D+Y+K GE+ +A ++FD +  +D+ SWN 
Sbjct: 234 QSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNT 293

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           LI G    NL  EA+ LF+ M   G   PN+VT+L  L AC HLGA   G  IH YI ++
Sbjct: 294 LIGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSILPACAHLGAIDIGRWIHVYINKK 352

Query: 240 RLDMNVVVCN------AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
              +  VV N      ++IDMYAKCG +D A +VFD+    +SL TWN M+  FA+HG  
Sbjct: 353 ---LKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRA 409

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGS 352
             A ++F +M   G++PDD++++  L AC+H+G++D G  +F SM     + P ++HYG 
Sbjct: 410 NAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGC 469

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           ++DLLG +G  +EA +++ ++ M  D V+W +LL AC+++G++E+ E  ++KL+++   N
Sbjct: 470 MIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGN 529

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK-VPGFSYIEVGGVIHKFFTSDKSHVK 471
            G +VLLSN+YAA  RW++V ++R  + ++ +KK VPG S IE+  V+H+F   DK H +
Sbjct: 530 SGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQ 589

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
            REIY  L+E+   ++E G+   TS VL ++ EE +E AL +HSEKLA+AFGLIST   T
Sbjct: 590 NREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGT 649

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
            + + KNLR+C++CH+  KLISK+Y REII RDR RF  F+DG C
Sbjct: 650 KLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 123/418 (29%), Positives = 209/418 (50%), Gaps = 39/418 (9%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNAVL 80
           ++ + A +  TG   +      SK++EF  +SP  +   YA ++F  I  P+   +N + 
Sbjct: 4   VRXIHAQMIKTGLHNTNY--ALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMF 61

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           RG A SS P +A+  Y  M+      D+ T  F LK+CA+     E  QIH HVL+ GF 
Sbjct: 62  RGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFD 121

Query: 141 ADALLGTTLLDVYAKVGE-------------------------------IVSAKKVFDEM 169
            D  + T+L+ +YA+ G                                I SA+K+FDE+
Sbjct: 122 LDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEI 181

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
             +D+ SWNA+I+G  +     EA++LFK M M    +P+E T++  ++AC    + + G
Sbjct: 182 PGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELG 241

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
             +H +I +     N+ + NA+ID+Y+K G ++ A E+FD +   K +++WNT++  +  
Sbjct: 242 RHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGL-WNKDVISWNTLIGGYTH 300

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNM 347
                 AL LF++M R+G  P+DV+ L+ L AC H G +D G  + ++ +    GV  N+
Sbjct: 301 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNV 360

Query: 348 KHY-GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASR 403
                S++D+  + G +  A  +  S      +  W  ++    ++G    A +I SR
Sbjct: 361 SSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSR 418


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/569 (39%), Positives = 341/569 (59%), Gaps = 15/569 (2%)

Query: 21  HIKQLQ---AHLTTTGQFQSKLFPVRSKIIEFYALS-PLNELAYAHALFRQINAPSTNDF 76
           H+++LQ   AHL  TG  +S     R+ + +   LS     +AY   LFR ++ P +  F
Sbjct: 22  HLRRLQQAHAHLVVTGCHRS-----RALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLF 76

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N++++  +      +AVL+YR+ML         T +  +KACA +  L     +HSHV  
Sbjct: 77  NSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFV 136

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G+ +D+ +   L+  YAK      A+KVFDEM  R I +WN++I+G  Q  LA+EAV++
Sbjct: 137 SGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEV 196

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           F +M+ E   +P+  T +  L+AC  LG+   G  +H+ I    + MNVV+  ++++M++
Sbjct: 197 FNKMR-ESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFS 255

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           +CG + +A  VF ++    ++V W  M+  + +HG G  A+E+F +M   GV P+ V+++
Sbjct: 256 RCGDVGRARAVFYSM-IEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFV 314

Query: 317 AALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           A L AC HAGL+D+G  +F SM    GV P ++H+  +VD+ GR G L EA   VK ++ 
Sbjct: 315 AVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLN- 373

Query: 376 GTDMV--LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
             ++V  +W  +LGAC+++ + ++    +  L+     N G +VLLSN+YA   R D V 
Sbjct: 374 SDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVE 433

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA 493
            VR  M  R +KK  G+S I+V    + F   DKSH +  EIY  LDE++++ K+ GYA 
Sbjct: 434 SVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAP 493

Query: 494 GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
                +H++  EE+E AL YHSEKLAVAFGL+ T +  ++++ KNLRIC DCH  IK IS
Sbjct: 494 VPESAMHELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFIS 553

Query: 554 KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            V NREIIVRD++RFH F++G+CSC DYW
Sbjct: 554 AVMNREIIVRDKLRFHHFREGSCSCSDYW 582


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/581 (37%), Positives = 342/581 (58%), Gaps = 11/581 (1%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           + +L +C S  A+     +++  H+  T    S    +R+++I  Y  +  + L  A  +
Sbjct: 94  DTILNECVSQRAIREG--QRVHTHMIKTCYLPSVY--LRTRLIVLY--NKCDCLGDAREM 147

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F ++   +   + A++   +       A+  + +MLR     +  T +  L +C   L  
Sbjct: 148 FDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGF 207

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               QIHS  ++  + +   +G++LLD+YAK G I  A  VF  +  RD+ +  A+I+G 
Sbjct: 208 ETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGY 267

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           AQ  L  EA+ LF+++++EG+   N VT    L A   L A   G ++H ++        
Sbjct: 268 AQMGLDEEALKLFRQLQIEGM-NSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSY 326

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           VV+ N++IDMY+KCG +  A  +FD++   ++ ++WN M++ ++ HG     LELF+ M 
Sbjct: 327 VVLLNSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAMLVGYSKHGMAREVLELFKLMR 385

Query: 305 RAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC--GVKPNMKHYGSVVDLLGRAG 361
               VKPD ++YLA L  C+H  L D G+ +F +M N   G++P++ HYG VVDLLGRAG
Sbjct: 386 EENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAG 445

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           R++EA D +K +       +W +LLG+C+++ DVE+  I  +KL+E+   N G++V+LSN
Sbjct: 446 RVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSN 505

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           LYA+  +W+D+  +R  M+ + V K PG S++E+  ++H F  SD +H +  E+ +K+ E
Sbjct: 506 LYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKE 565

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           +  K KE GY    SCVL+D+ EE+KE  L  HSEKLA+AFGLI+T E T+I+V KNLRI
Sbjct: 566 LSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRI 625

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH   K +S++Y R +I+RD+ RFH    G CSC DYW
Sbjct: 626 CVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/560 (39%), Positives = 336/560 (60%), Gaps = 8/560 (1%)

Query: 24  QLQAHLTTTGQFQSKLFPVRS-KIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           QL AH+    +F  +  P+ S  +I  Y+ + L    ++  +F +    S+  +++V+  
Sbjct: 46  QLHAHIL---KFGLQTIPLVSHNLINLYSKTQLP--LFSLQVFDETPKKSSTTWSSVISA 100

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A +  P  A+ ++R+ML    R D      A KAC  +        +H   ++ G+  D
Sbjct: 101 FAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCD 160

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G++L+D+YAK GEI  A+ +FDEM  R++ SW+ +I G AQ +   EA+ LFK+  +
Sbjct: 161 VFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALI 220

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           E V   N+ T    +  C      + G  IH    +   D +  V +A+I +Y+KCG+++
Sbjct: 221 EDV-DVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIE 279

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A++VFD I  R +L  WN+M++A A H    R   LFE+MG  G+KP+ + +L+ L AC
Sbjct: 280 GAYQVFDEIPTR-NLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYAC 338

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           +HAGLV+ G   F+ M + G++P  +HY S+VDLLGRAG+LQEA  ++K + M     +W
Sbjct: 339 SHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVW 398

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
             LL  C+++ D EMA   + +++EM S++ G  VLLSN YAA  R+++  R+RK +++R
Sbjct: 399 GALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDR 458

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            VKK  G S++E G  +H F   D+SH KW EIYEKL+E+  ++++ GY A TS VL  +
Sbjct: 459 GVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAV 518

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
             EEK   + YHSE+LA+AFGLI+      I+V KNLR+C DCH  IK +SK   R +IV
Sbjct: 519 DGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIV 578

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFHRF+DG CSC DYW
Sbjct: 579 RDNNRFHRFEDGKCSCGDYW 598



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 138/275 (50%), Gaps = 3/275 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L +  R  +L + LQ+H+H+L+ G     L+   L+++Y+K    + + +VFDE   +  
Sbjct: 32  LLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSS 91

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            +W+++I+  AQ      A+  F+RM  +GV +P++     A  ACG L     G  +H 
Sbjct: 92  TTWSSVISAFAQNEAPLLALQFFRRMLNDGV-RPDDHIYPSATKACGFLRRSDVGKSVHC 150

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +     +V V ++++DMYAKCG +  A  +FD +   +++V+W+ M+  +A   DG 
Sbjct: 151 LAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP-ERNVVSWSGMIYGYAQLDDGV 209

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            AL LF+Q     V  +D ++ + +  C+ +  ++ G  +           +     +++
Sbjct: 210 EALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALI 269

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
            L  + G ++ A  +   +    ++ LW ++L AC
Sbjct: 270 SLYSKCGVIEGAYQVFDEIPT-RNLGLWNSMLIAC 303



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 3/206 (1%)

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           +  F+ N   +   L +     + ++G ++H +I +  L    +V + +I++Y+K  L  
Sbjct: 18  QNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPL 77

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            + +VFD    +KS  TW++++ AFA +     AL+ F +M   GV+PDD  Y +A  AC
Sbjct: 78  FSLQVFDETP-KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKAC 136

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
                 D G  +       G   ++    S+VD+  + G + +A  +   +    ++V W
Sbjct: 137 GFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPE-RNVVSW 195

Query: 383 QTLL-GACQLYGDVEMAEIASRKLVE 407
             ++ G  QL   VE   +  + L+E
Sbjct: 196 SGMIYGYAQLDDGVEALTLFKQALIE 221


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/582 (37%), Positives = 355/582 (60%), Gaps = 13/582 (2%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           L+ LL+  SS        +K++ A +  TG F  K   + ++++E   L  + ++ YA  
Sbjct: 13  LSELLRASSSKPK----QLKKIHAIVLRTG-FSEK-NSLLTQLLE--NLVVIGDMCYARQ 64

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F +++ P    +N + +G   +  P  ++L Y++M     R D  T  F +KA +++  
Sbjct: 65  VFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGD 124

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
                 +H+HV+++GF    ++ T L+ +Y K GE+ SA+ +F+ M V+D+ +WNA +A 
Sbjct: 125 FSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAV 184

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q   ++ A++ F +M  + V + +  TV+  L+ACG LG+ + G++I++  R+E +D 
Sbjct: 185 CVQTGNSAIALEYFNKMCADAV-QFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDC 243

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N++V NA +DM+ KCG  + A  +F+ +K ++++V+W+TM++ +A++GD   AL LF  M
Sbjct: 244 NIIVENARLDMHLKCGNTEAARVLFEEMK-QRNVVSWSTMIVGYAMNGDSREALTLFTTM 302

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG---VKPNMKHYGSVVDLLGRA 360
              G++P+ V++L  L AC+HAGLV++G R F+ M       ++P  +HY  +VDLLGR+
Sbjct: 303 QNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRS 362

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L+EA + +K + +  D  +W  LLGAC ++ D+ + +  +  LVE   +     VLLS
Sbjct: 363 GLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLS 422

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YAA  +WD V +VR  M+    KKV  +S +E  G IH F   DKSH + + IYEKLD
Sbjct: 423 NIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLD 482

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           EI+ KI++ GY   T  V HD+  EEKE +L +HSEKLA+AFGLI       I+V KNLR
Sbjct: 483 EILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLR 542

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            C DCH   K +S + + EII+RD+ RFH F++G CSCK++W
Sbjct: 543 TCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/420 (46%), Positives = 292/420 (69%), Gaps = 4/420 (0%)

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           +F EM  RD+ SWN+++A  AQ    +EA+ LF +M+  GV KP E TV+  L+AC HLG
Sbjct: 170 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV-KPTEATVVSLLSACAHLG 228

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A  +G  +H YI + R+++N +V  A++DMYAKCG +  A +VF+ ++  K ++ WNT++
Sbjct: 229 ALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME-SKDVLAWNTII 287

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GV 343
              A+HG    A  LF++M  AGV+P+D++++A L AC+HAG+VD+G +L + M++  G+
Sbjct: 288 AGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGI 347

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
           +P ++HYG V+DLL RAG L+EA +++ ++ M  +      LLG C+++G+ E+ E+  +
Sbjct: 348 EPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGK 407

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
           +L+ +   + G ++LLSN+YAA ++WDD  +VR  MK   + KVPG S IE+ G++H+F 
Sbjct: 408 RLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFV 467

Query: 464 TSDKSHVKWREIYEKLDEIMFKIKE-YGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
             D SH +  +IYEKL+EI  ++K   G++A T  VL D+ EE+KE+AL  HSEKLA+A+
Sbjct: 468 AGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHSEKLAIAY 527

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           GL+      +I++ KNLR+CRDCH V KLISKVY REIIVRDR RFH F+DG CSC D+W
Sbjct: 528 GLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 587



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 128/246 (52%), Gaps = 6/246 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF ++       +N++L   A   KP  A+  + QM     +    T    L ACA 
Sbjct: 167 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 226

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL + L +H+++  +    ++++GT L+D+YAK G+I  A +VF+ M  +D+ +WN +
Sbjct: 227 LGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTI 286

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IAG+A      EA  LFK MK  GV +PN++T +  L+AC H G   EG K+ + +    
Sbjct: 287 IAGMAIHGHVKEAQRLFKEMKEAGV-EPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSY 345

Query: 241 -LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            ++  V     VID+ A+ GLL++A E+   +    +      ++    +HG+     EL
Sbjct: 346 GIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGN----FEL 401

Query: 300 FEQMGR 305
            E +G+
Sbjct: 402 GEMVGK 407


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/563 (38%), Positives = 322/563 (57%), Gaps = 36/563 (6%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSF 113
           + ++  A A F Q+       +N+++ G         A+  + +MLR S  S D  T + 
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLAS 284

Query: 114 ALKACARVLALFETLQIHSHVLRHGF-----LADALLG---------------------- 146
            L ACA +  L    QIHSH++  GF     + +AL+                       
Sbjct: 285 VLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344

Query: 147 ------TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
                 T LLD Y K+G++  AK +FD +  RD+ +W A+I G  Q  L  EA++LF+ M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSM 404

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
             E   +PN  T+   L+    L +   G +IH    +     +V V NA+I MYAK G 
Sbjct: 405 VGEEQ-RPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGS 463

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +  A   FD I+C +  V+W +M++A A HG    ALELFE M   G++PD ++Y+    
Sbjct: 464 ITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFS 523

Query: 321 ACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC HAGLV+ G + F+ M +   + P + HY  +VDL GRAG LQEA + ++ + +  D+
Sbjct: 524 ACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDV 583

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           V W +LL AC++Y ++++ ++A+ +L+ +   N G +  L+NLY+A  +W++  ++RK+M
Sbjct: 584 VTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSM 643

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           K+  VKK  GFS+IEV   +H F   D  H +  EIY  + +I  +IK+ GY   T+ VL
Sbjct: 644 KDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVL 703

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           HD+ EE KE  L +HSEKLA+AFGLIST + T++++ KNLR+C DCH  IK ISK+  RE
Sbjct: 704 HDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGRE 763

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           IIVRD  RFH FKDG CSC+DYW
Sbjct: 764 IIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 169/399 (42%), Gaps = 65/399 (16%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
            F ++    +  +  ++ G  +  +   A+    +M+R        T +  L + A    
Sbjct: 102 FFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRC 161

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA- 182
           L    ++HS +++ G   +  +  +LL++YAK G+ + AK VFD M V+DI+SWNA+IA 
Sbjct: 162 LETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIAL 221

Query: 183 ---------GLAQGNLASE---------------------AVDLFKRMKMEGVFKPNEVT 212
                     +AQ    +E                     A+D+F +M  + +  P+  T
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFT 281

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG------------- 259
           +   L+AC +L     G++IH +I     D++ +V NA+I MY++CG             
Sbjct: 282 LASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG 341

Query: 260 -----------LLD---------KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
                      LLD         +A  +FD++K R  +V W  M++ +  HG    A+ L
Sbjct: 342 TKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDR-DVVAWTAMIVGYEQHGLYGEAINL 400

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           F  M     +P+  +  A L   +    +  G ++  S    G   ++    +++ +  +
Sbjct: 401 FRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAK 460

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           AG +  A      +    D V W +++ A   +G  E A
Sbjct: 461 AGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEA 499



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 110/477 (23%), Positives = 194/477 (40%), Gaps = 98/477 (20%)

Query: 109 LTCSFALKACARVL--------ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
           L+ S  L+ C  +L          F    +H  V++ G +    L   L++VY+K G  +
Sbjct: 7   LSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYAL 66

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQ-GNLAS---------------------------- 191
            A+K+FDEM +R   SWN +++  A+ G++ S                            
Sbjct: 67  HARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQ 126

Query: 192 --EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             +A+ +   M  EG+ +P++ T+   LA+       + G K+H +I +  L  NV V N
Sbjct: 127 YHKAIRIMGEMMREGI-EPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSN 185

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           ++++MYAKCG    A  VFD +   K + +WN M+      G    A+  FEQM     +
Sbjct: 186 SLLNMYAKCGDPMMAKVVFDRMVV-KDISSWNAMIALHMQVGQMDLAMAQFEQMA----E 240

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
            D V++ + +   N  G     + +F+ M                               
Sbjct: 241 RDIVTWNSMISGYNQRGYDLRALDMFSKM------------------------------- 269

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW 429
           ++   +  D     ++L AC     + + E     +V  G +  G  ++L+ L + Y R 
Sbjct: 270 LRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISG--IVLNALISMYSRC 327

Query: 430 DDVGRVRKAMKNRDVK--KVPGFS-----YIEVGGV--IHKFFTS--DKSHVKWREIYEK 478
             V   R+ ++ R  K  K+ GF+     YI++G +      F S  D+  V W      
Sbjct: 328 GGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAW------ 381

Query: 479 LDEIMFKIKEYG-YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
              ++   +++G Y    +     +GEE++ N+    +  L+VA  L S      I 
Sbjct: 382 -TAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTL-AAMLSVASSLASLGHGKQIH 436


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/547 (39%), Positives = 326/547 (59%), Gaps = 30/547 (5%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKAC 118
           + H L R+I       +NA++ G A +     A++ + +M++      +  T +  + AC
Sbjct: 356 FDHILGRRIEL-----WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
               A      IH + ++ GF  D  +   L+D+Y+++G++  ++ +FD M VRD  SWN
Sbjct: 411 VHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWN 470

Query: 179 ALIAGLAQGNLASEAVDLFKRM-KME---------------GVFKPNEVTVLGALAACGH 222
            +I G       S A+ L   M +ME               G +KPN +T++  L  C  
Sbjct: 471 TMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAA 530

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           L A  +G +IH Y     L  ++ V +A++DMYAKCG L+ +  VF+ +   K+++TWN 
Sbjct: 531 LAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNV 589

Query: 283 MVMAFAVHGDGPRALELFEQM----GRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           ++MA  +HG G  ALELF+ M    GR G  KP++V+++    AC+H+GL+ +G+ LF  
Sbjct: 590 LIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYR 649

Query: 338 MA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV-LWQTLLGACQLYGDV 395
           M  + GV+P   HY  VVDLLGRAG+L+EA ++V ++    D V  W +LLGAC+++ +V
Sbjct: 650 MKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNV 709

Query: 396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEV 455
           E+ E+A++ L+ +  N    +VLLSN+Y++   W+    VRK M+   VKK PG S+IE 
Sbjct: 710 ELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEF 769

Query: 456 GGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHS 515
              +HKF   D SH +  +++  L+ +  K+++ GY   TSCVLH++ E+EKEN LC HS
Sbjct: 770 RDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHS 829

Query: 516 EKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGA 575
           EKLA+AFG+++T   T+I+V KNLR+C DCH   K ISK+  REIIVRD  RFH FK+G 
Sbjct: 830 EKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGT 889

Query: 576 CSCKDYW 582
           CSC DYW
Sbjct: 890 CSCGDYW 896



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 193/419 (46%), Gaps = 27/419 (6%)

Query: 11  CSSNGAVSHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQIN 69
           CS+ G +  + + KQL  +    G    K F   + ++  YA   L  +  + ALF    
Sbjct: 204 CSNLGVMHGLRLGKQLHGYSLRVGD--QKTF-TNNALMAMYA--KLGRVDDSKALFESFV 258

Query: 70  APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ 129
                 +N ++   + S + + A+ ++R M+      D +T +  L AC+ +  L    +
Sbjct: 259 DRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKE 318

Query: 130 IHSHVLRHG-FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           IH++VLR+   + ++ +G+ L+D+Y    ++ S ++VFD +  R I  WNA+I+G A+  
Sbjct: 319 IHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNG 378

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
           L  +A+ LF  M       PN  T+   + AC H  A+   + IH Y  +     +  V 
Sbjct: 379 LDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQ 438

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR--- 305
           NA++DMY++ G +D +  +FD+++ R   V+WNTM+  + + G    AL L  +M R   
Sbjct: 439 NALMDMYSRMGKMDISETIFDSMEVRDR-VSWNTMITGYVLSGRYSNALVLLHEMQRMEN 497

Query: 306 --------------AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
                            KP+ ++ +  L  C     +  G  +        +  ++    
Sbjct: 498 TKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGS 557

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASRKLVEMG 409
           ++VD+  + G L  +  +   +    +++ W  L+ AC ++G  E A E+    + E G
Sbjct: 558 ALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHGKGEEALELFKNMVAEAG 615



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 160/336 (47%), Gaps = 11/336 (3%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F +I       +N+ +  L    K   A+  +R M   +    + T      AC+  L 
Sbjct: 150 VFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSN-LG 208

Query: 124 LFETL----QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           +   L    Q+H + LR G          L+ +YAK+G +  +K +F+    RD+ SWN 
Sbjct: 209 VMHGLRLGKQLHGYSLRVGD-QKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNT 267

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-RE 238
           +I+  +Q +  SEA+  F+ M +EGV + + VT+   L AC HL     G +IH Y+ R 
Sbjct: 268 MISSFSQSDRFSEALAFFRLMVLEGV-ELDGVTIASVLPACSHLERLDVGKEIHAYVLRN 326

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L  N  V +A++DMY  C  ++    VFD+I  R+ +  WN M+  +A +G   +AL 
Sbjct: 327 NDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRR-IELWNAMISGYARNGLDEKALI 385

Query: 299 LFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           LF +M + AG+ P+  +  + + AC H     +   +       G K +     +++D+ 
Sbjct: 386 LFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMY 445

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            R G++  +  I  S+ +  D V W T++    L G
Sbjct: 446 SRMGKMDISETIFDSMEV-RDRVSWNTMITGYVLSG 480



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 133/265 (50%), Gaps = 9/265 (3%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIH 131
           ST  +   LR    S+    A+  Y +M     R D       LKA + +  L    QIH
Sbjct: 56  STASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIH 115

Query: 132 SHVLRHGFLADAL-LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           +  ++ G+ + ++ +  TL+++Y K G I    KVFD +  RD  SWN+ IA L +    
Sbjct: 116 AAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKW 175

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG---AWKEGDKIHEYIREERL-DMNVV 246
            +A++ F+ M+ME + + +  T++    AC +LG     + G ++H Y    R+ D    
Sbjct: 176 EQALEAFRAMQMENM-ELSSFTLVSVALACSNLGVMHGLRLGKQLHGY--SLRVGDQKTF 232

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
             NA++ MYAK G +D +  +F++   R  +V+WNTM+ +F+       AL  F  M   
Sbjct: 233 TNNALMAMYAKLGRVDDSKALFESFVDR-DMVSWNTMISSFSQSDRFSEALAFFRLMVLE 291

Query: 307 GVKPDDVSYLAALCACNHAGLVDDG 331
           GV+ D V+  + L AC+H   +D G
Sbjct: 292 GVELDGVTIASVLPACSHLERLDVG 316


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/581 (37%), Positives = 349/581 (60%), Gaps = 10/581 (1%)

Query: 4    LNALLQKCSSNGAVSHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
            L ++L+ CSS   +  ++I +Q+  H   TG        V + +I+ Y+ S   ++  A 
Sbjct: 1008 LASVLRACSS--LIDGLNISRQIHVHALKTGNIADSF--VATTLIDVYSKS--GKMEEAE 1061

Query: 63   ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
             LF+  +      +NA++ G    +    A+  +  + +   +SD +T + A KAC  ++
Sbjct: 1062 FLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLV 1121

Query: 123  ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
             L +  QIH+H ++ GF +D  + + +LD+Y K G++V+A  VF+ +   D  +W ++I+
Sbjct: 1122 LLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMIS 1181

Query: 183  GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
            G        +A+ ++ RM+   V  P+E T    + A   + A ++G ++H  + +    
Sbjct: 1182 GCVDNGNEDQALRIYHRMRQSRVM-PDEYTFATLIKASSCVTALEQGRQLHANVIKLDCV 1240

Query: 243  MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
             +  V  +++DMYAKCG ++ A+ +F  +  R ++  WN M++  A HG+   A+ LF+ 
Sbjct: 1241 SDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEAVNLFKS 1299

Query: 303  MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAG 361
            M   G++PD VS++  L AC+HAGL  +     +SM N  G++P ++HY  +VD LGRAG
Sbjct: 1300 MKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAG 1359

Query: 362  RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
             +QEA  +++++       + + LLGAC++ GDVE  +  + +L  +   +   +VLLSN
Sbjct: 1360 LVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSN 1419

Query: 422  LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
            +YAA  RWDDV   RK MK ++VKK PGFS+I+V  ++H F   D+SH +   IY+K++E
Sbjct: 1420 IYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEE 1479

Query: 482  IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
            +M  I+E GY   T  VL D+ +EEKE +L YHSEKLA+A+GLIST  +T+I+V KNLR+
Sbjct: 1480 MMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRV 1539

Query: 542  CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            C DCH+ IK ISKV+ REI++RD  RFH F+DG CSC DYW
Sbjct: 1540 CGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 147/293 (50%), Gaps = 4/293 (1%)

Query: 107  DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF 166
            DA+T    L A A    L    Q+H   ++ G  +D  +  +L+++Y+K+G    A++VF
Sbjct: 903  DAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVF 962

Query: 167  DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL-GA 225
            ++M   D+ SWN++I+  AQ +L  E+V+LF  +  EG+ KP+  T+   L AC  L   
Sbjct: 963  NDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGL-KPDHFTLASVLRACSSLIDG 1021

Query: 226  WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
                 +IH +  +     +  V   +ID+Y+K G +++A  +F N K    L  WN M+ 
Sbjct: 1022 LNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQN-KDDLDLACWNAMMF 1080

Query: 286  AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
             + +  DG +ALELF  + ++G K D ++   A  AC    L+D G ++       G   
Sbjct: 1081 GYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 1140

Query: 346  NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            ++     ++D+  + G +  A  +   +S   D V W +++  C   G+ + A
Sbjct: 1141 DLHVNSGILDMYIKCGDMVNAGIVFNYIS-APDDVAWTSMISGCVDNGNEDQA 1192



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 9/190 (4%)

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA----- 185
           H+ ++  G   D  L   LL +Y+K G + SA++VFD    RD+ +WNA++   A     
Sbjct: 644 HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDS 703

Query: 186 -QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
             GN A E + LF+ ++   +     +T+   L  C + G     + +H Y  +  L+ +
Sbjct: 704 NDGN-AQEGLHLFRLLRAS-LGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWD 761

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           V V  A++++Y+KCG +  A  +FD ++ R  +V WN M+  +   G    A +LF +  
Sbjct: 762 VFVSGALVNIYSKCGRMRDARLLFDWMRER-DVVLWNMMLKGYVQLGLEKEAFQLFSEFH 820

Query: 305 RAGVKPDDVS 314
           R+G++PD+ S
Sbjct: 821 RSGLRPDEFS 830



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 132/323 (40%), Gaps = 41/323 (12%)

Query: 76  FNAVLRGLAHS--SKPTNAV--LWYRQMLRGSHRSDA-LTCSFALKACARVLALFETLQI 130
           +NA+L   A S  S   NA   L   ++LR S  S   +T +  LK C     L+    +
Sbjct: 690 WNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGV 749

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H + ++ G   D  +   L+++Y+K G +  A+ +FD M  RD+  WN ++ G  Q  L 
Sbjct: 750 HGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLE 809

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG----DKIHEYIREERLDMNVV 246
            EA  LF      G+ +P+E +V   L     +  W EG    D++  Y           
Sbjct: 810 KEAFQLFSEFHRSGL-RPDEFSVQLILNGVSEVN-WDEGKWLADQVQAYA---------- 857

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
                    AK  L D   +VF           WN  +      GD   A+E F  M   
Sbjct: 858 ---------AKLSLSDDNPDVF----------CWNKKLSECLWAGDNWGAIECFVNMNGL 898

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            +  D V+ L  L A      ++ G ++       G+  ++    S+V++  + G    A
Sbjct: 899 NIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFA 958

Query: 367 CDIVKSVSMGTDMVLWQTLLGAC 389
            ++   +    D++ W +++ +C
Sbjct: 959 REVFNDMKH-LDLISWNSMISSC 980


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/510 (40%), Positives = 316/510 (61%), Gaps = 34/510 (6%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           + +  T S  +KACA + +L +  Q H+++++ GF +D ++ T L+ +YA+ G +  A  
Sbjct: 7   KPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGH 66

Query: 165 VFD-------------------------------EMGVRDIASWNALIAGLAQGNLASEA 193
           VFD                               EM  RD+ SW A+IAG AQ     E+
Sbjct: 67  VFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDES 126

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253
           +++F +M+  G+ K +   +   L+AC  L A + G + H Y+ +    +++VV +A++D
Sbjct: 127 LNVFNQMRKTGM-KSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVD 185

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313
           MYAK G ++ A +VFD +  R   V+WN+++   A HG G  A+ LFEQM +AG+KP+++
Sbjct: 186 MYAKSGSMEDACQVFDKMPQRNE-VSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEI 244

Query: 314 SYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
           S++  L AC+H GLV++G   FN M  N G+ P++ HY  ++DLLGRAG L EA + +  
Sbjct: 245 SFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFING 304

Query: 373 VSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV 432
           + +  D+ +W  LLGAC+++G+ E+A+  +  L+ M     G +VLLSN+YAA  +WDD 
Sbjct: 305 MPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDA 364

Query: 433 GRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYA 492
            +VRK MK+R V K PG+S+IEV  ++H F   + SH + +EI+E L+ +  K+K  GY 
Sbjct: 365 AKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYV 424

Query: 493 AGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLI 552
              + VL D+ ++EKE +L +HSEKLA+AFG+I+T+  T+I+V KNLR+C DCH VIK I
Sbjct: 425 PNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTVIKFI 484

Query: 553 SKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           S  + R+I+VRD  RFH FKDG CSC DYW
Sbjct: 485 SLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 130/250 (52%), Gaps = 6/250 (2%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           ++  A  LF +++      + AV+ G A +     ++  + QM +   +SD       L 
Sbjct: 91  DMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLS 150

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA + AL    Q H++V++ GF  D ++G+ L+D+YAK G +  A +VFD+M  R+  S
Sbjct: 151 ACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVS 210

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN++I G AQ    ++AV LF++M   G+ KPNE++ +G L+AC H G   EG      +
Sbjct: 211 WNSIITGCAQHGRGNDAVLLFEQMLQAGI-KPNEISFVGVLSACSHTGLVNEGRGYFNLM 269

Query: 237 REER---LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            +      D++   C  +ID+  + G LD+A    + +     +  W  ++ A  +HG+ 
Sbjct: 270 TQNYGIVPDVSHYTC--MIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNT 327

Query: 294 PRALELFEQM 303
             A  + E +
Sbjct: 328 ELAKRIAEHL 337


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/609 (37%), Positives = 352/609 (57%), Gaps = 44/609 (7%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFY-ALSPLNELAYAHAL 64
           +LLQ+      V  IH     A L   G  Q         + E   + S  + + YA  +
Sbjct: 54  SLLQRSRHINQVLPIH-----AQLIRNGHSQDPFM-----VFELLRSCSKCHAIDYASRI 103

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F+  + P+   + A++ G   S     A+  Y +ML  S   D    +  LKAC   LAL
Sbjct: 104 FQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLAL 163

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV------------- 171
            E  ++HS  L+ GF ++ L+   ++++Y K GE+  A++VF+EM               
Sbjct: 164 REGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYS 223

Query: 172 -----------------RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
                            +D   W A+I G  +    + A++ F+ M+ E V +PNE T++
Sbjct: 224 DQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENV-RPNEFTIV 282

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L+AC  LGA + G  +H Y+R+  +++N+ V NA+I+MY++CG +D+A  VFD +K R
Sbjct: 283 CVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR 342

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
             ++T+NTM+   +++G   +A+ELF  M    ++P +V+++  L AC+H GLVD G  +
Sbjct: 343 -DVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEI 401

Query: 335 FNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           F+SMA +  V+P ++HYG +VDLLGR GRL+EA D+++++ M  D ++  TLL AC+++ 
Sbjct: 402 FHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHK 461

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           ++E+ E  +++L + G  + G +VLLS++YA+  +W +  +VR  MK   ++K PG S I
Sbjct: 462 NLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 521

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           EV   IH+F   D  H +   IYEKL+E+   ++  GY      VL DI + EKE AL  
Sbjct: 522 EVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAM 581

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSE+LA+ +GLIST   T I+V KNLR+C DCH  IKLI+K+  R+I+VRDR RFH F++
Sbjct: 582 HSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFEN 641

Query: 574 GACSCKDYW 582
           GACSC DYW
Sbjct: 642 GACSCGDYW 650


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/554 (39%), Positives = 336/554 (60%), Gaps = 14/554 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
            +S +F V + +I  Y  S    L  A  +F  +       +N+++     +  P  A+ 
Sbjct: 279 LESDVF-VSNALINMY--SKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALG 335

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQI----HSHVLRHGFL-ADALLGTTL 149
           ++++ML    R D LT    + + A +       +I    H  V+R  +L  D ++G  L
Sbjct: 336 FFKEMLFVGMRPDLLT----VVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNAL 391

Query: 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN 209
           +++YAK+G I  A+ VF+++  RD+ SWN LI G AQ  LASEA+D +  M+      PN
Sbjct: 392 VNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPN 451

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
           + T +  L A  H+GA ++G KIH  + +  L ++V V   +IDMY KCG L+ A  +F 
Sbjct: 452 QGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFY 511

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
            I  +++ V WN ++ +  +HG G +AL+LF+ M   GVK D +++++ L AC+H+GLVD
Sbjct: 512 EIP-QETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVD 570

Query: 330 DGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +    F++M     +KPN+KHYG +VDL GRAG L++A ++V ++ +  D  +W TLL A
Sbjct: 571 EAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAA 630

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448
           C+++G+ E+   AS +L+E+ S N G +VLLSN+YA   +W+   +VR   ++R ++K P
Sbjct: 631 CRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTP 690

Query: 449 GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKE 508
           G+S + VG V+  F+  ++SH +  EIYE+L  +  K+K  GY    S VL D+ E+EKE
Sbjct: 691 GWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKE 750

Query: 509 NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
             L  HSE+LA+ FG+IST   + I++FKNLR+C DCH+  K ISK+  REIIVRD  RF
Sbjct: 751 EILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRF 810

Query: 569 HRFKDGACSCKDYW 582
           H FKDG CSC DYW
Sbjct: 811 HHFKDGICSCGDYW 824



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 188/360 (52%), Gaps = 9/360 (2%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  Y  S    +  AH +F  +       +NA++ G   +     A+    +M  
Sbjct: 184 VAASLIHLY--SRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKT 241

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              + D +T S  L  CA+   +   + +H +V++HG  +D  +   L+++Y+K G +  
Sbjct: 242 EEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQD 301

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A++VFD M VRD+ SWN++IA   Q +    A+  FK M   G+ +P+ +TV+   +  G
Sbjct: 302 AQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGM-RPDLLTVVSLASIFG 360

Query: 222 HLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
            L   + G  +H + +R   L++++V+ NA+++MYAK G +D A  VF+ +  R  +++W
Sbjct: 361 QLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSR-DVISW 419

Query: 281 NTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           NT++  +A +G    A++ +  M  GR  + P+  ++++ L A +H G +  G+++   +
Sbjct: 420 NTLITGYAQNGLASEAIDAYNMMEEGRT-IVPNQGTWVSILPAYSHVGALQQGMKIHGRL 478

Query: 339 ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
               +  ++     ++D+ G+ GRL++A  +   +   T  V W  ++ +  ++G  E A
Sbjct: 479 IKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETS-VPWNAIISSLGIHGHGEKA 537



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 156/290 (53%), Gaps = 10/290 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQL A L   G+ Q  +  + ++++  YA   L +L+ +   F+ I   +   +N+++  
Sbjct: 68  KQLHALLLVLGKAQDVV--LLTQLVTLYA--TLGDLSLSSTTFKHIQRKNIFSWNSMVSA 123

Query: 83  LAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
                +  +++    ++L  S  R D  T    LKAC   L+L +  ++H  VL+ GF  
Sbjct: 124 YVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKAC---LSLADGEKMHCWVLKMGFEH 180

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  +  +L+ +Y++ G +  A KVF +M VRD+ SWNA+I+G  Q    +EA+ +  RMK
Sbjct: 181 DVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMK 240

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            E V K + VTV   L  C        G  +H Y+ +  L+ +V V NA+I+MY+K G L
Sbjct: 241 TEEV-KMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRL 299

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
             A  VFD ++ R  LV+WN+++ A+  + D   AL  F++M   G++PD
Sbjct: 300 QDAQRVFDGMEVR-DLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPD 348


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/531 (39%), Positives = 317/531 (59%), Gaps = 3/531 (0%)

Query: 53  SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           S   E+  A  LF QI  P    +NA++ G   +++  ++V  ++++L    + ++ +  
Sbjct: 253 SKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIV 312

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
             +        L  T  IH    + G ++++ + T L  VY+++ EI SA+ +FDE   +
Sbjct: 313 GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEK 372

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
            +ASWNA+I+G AQ  L  +A+ LF+ M+   V +PN VTV   L+AC  LGA   G  +
Sbjct: 373 SLASWNAMISGYAQNGLTEKAISLFQEMQKCEV-RPNPVTVTSILSACAQLGALSLGKWV 431

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H+ I  E  + N+ V  A+IDMYAKCG + +A  +F  +   K+ VTWN M+  + +HG 
Sbjct: 432 HDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLHGY 490

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYG 351
           G  AL LF +M  + V P  V++L+ L AC+HAGLV +G  +F SM  + G +P  +HY 
Sbjct: 491 GHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYA 550

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +VDLLGRAG L +A D ++ + +     +W  LLGAC ++ D  +A +AS KL E+   
Sbjct: 551 CMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQ 610

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           N G +VLLSN+Y+A + + +   VR  +K R + K PG + IEV   +H F + D+SH +
Sbjct: 611 NVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQ 670

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
              IY  L+++  K++E G+   T   LHD+ EEEKE  +  HSEKLA+AFGLI++   T
Sbjct: 671 ATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGT 730

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            I++ KNLR+C DCH+  K ISK+  R I+VRD  RFH FKDG CSC DYW
Sbjct: 731 EIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 174/359 (48%), Gaps = 6/359 (1%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F S LF V S I+  Y     + +A A  +F  +    T  +N ++ GL  +S    A+L
Sbjct: 137 FGSDLF-VGSAIVACYF--KFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAIL 193

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
            +  M++G    D+ T +  L   A +  L   + I    ++ GF + A + T L  +Y+
Sbjct: 194 IFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYS 253

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K GEI +A+ +F ++G  D+ S+NA+I+G    N    +V LFK + + G  K N  +++
Sbjct: 254 KCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGE-KVNSSSIV 312

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
           G +      G       IH +  +  +  N  V  A+  +Y++   ++ A  +FD     
Sbjct: 313 GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDE-SSE 371

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           KSL +WN M+  +A +G   +A+ LF++M +  V+P+ V+  + L AC   G +  G  +
Sbjct: 372 KSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWV 431

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            + +     + N+    +++D+  + G + EA  +  S+    + V W  ++    L+G
Sbjct: 432 HDLINRESFESNIFVSTALIDMYAKCGSITEAQRLF-SMMPEKNAVTWNAMISGYGLHG 489



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 121/266 (45%), Gaps = 6/266 (2%)

Query: 50  YALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDA 108
           + LS L  +  A  LF  I  P    +N ++R  + ++ P++AV  Y  + + +    D 
Sbjct: 50  HKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDN 109

Query: 109 LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE 168
            T +F +   + +             +  GF +D  +G+ ++  Y K   + +A+KVFD 
Sbjct: 110 FTYAFVISGASSLGLGLLLHAHS---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDG 166

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
           M  RD   WN +++GL + +   EA+ +F  M ++G    +  TV   L     L     
Sbjct: 167 MLERDTVLWNTMVSGLVKNSCFDEAILIFGDM-VKGGIGFDSTTVAAVLPGVAELQDLAL 225

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G  I     +     +  V   +  +Y+KCG ++ A  +F  I  +  LV++N M+  + 
Sbjct: 226 GMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIG-QPDLVSYNAMISGYT 284

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVS 314
            + +   ++ LF+++  +G K +  S
Sbjct: 285 CNNETESSVRLFKELLVSGEKVNSSS 310


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/564 (39%), Positives = 333/564 (59%), Gaps = 6/564 (1%)

Query: 20  IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAV 79
            H+  +   L     F   +F V++ ++ FY  S    L  A  +F  +   +   +  +
Sbjct: 120 FHLGVMIHSLVFKTGFDCDVF-VKTNVVCFY--SKCGFLRDAWKVFDDMVVKNVVSWTGM 176

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           + G     K   AV  +R +L    R D       L+ACAR+  L     I   +   G 
Sbjct: 177 ICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGL 236

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
             +  + T+L+D+Y K G +  A+ VFD M  +DI  W+A+I G A   L  EA++LF  
Sbjct: 237 SRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFE 296

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+   V +P+   ++GAL++C  LGA + G+     +  E    N V+  ++ID YAKCG
Sbjct: 297 MRKVNV-RPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCG 355

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            +++A  V+  +K  K  V +N ++   A++G    A  +F QMG+ G+ P++ +++  L
Sbjct: 356 SMEEALGVYKMMK-EKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLL 414

Query: 320 CACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
           C C HAGLVDDG   FNSM+ +  V P ++HYG +VDLL RAG L EA +++K + M  +
Sbjct: 415 CGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKAN 474

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
           +++W +LLG C+L+ + ++AE   ++L+E+   N G +VLLSN+Y+A  RWD+  ++R  
Sbjct: 475 VIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRST 534

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           +  + ++K+PG+S++EV GV+H+F   D SH   ++IYEKL+ +   +KE GY   T  V
Sbjct: 535 VNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFV 594

Query: 499 LHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNR 558
           L D+ EEEKE+ L  HSEKLAVAF LIST     I+V KNLR+C DCH+ IK ISKV  R
Sbjct: 595 LFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGR 654

Query: 559 EIIVRDRVRFHRFKDGACSCKDYW 582
           EI++RD  RFH F DGACSC+DYW
Sbjct: 655 EIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 175/344 (50%), Gaps = 4/344 (1%)

Query: 56  NELAYAHALFRQINAPS-TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           N   Y   +F +    S T  +N ++RG+    +  NAV  Y  M + +   D+ T SF 
Sbjct: 51  NNAQYPILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFV 110

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           LKACAR+      + IHS V + GF  D  + T ++  Y+K G +  A KVFD+M V+++
Sbjct: 111 LKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNV 170

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW  +I G  +     EAVDLF+ + +E   +P+   ++  L AC  LG  + G  I  
Sbjct: 171 VSWTGMICGCIEFGKFREAVDLFRGL-LESGLRPDGFVIVRVLRACARLGDLESGRWIDR 229

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            +RE  L  NV V  +++DMY KCG +++A  VFD +   K +V W+ M+  +A +G   
Sbjct: 230 CMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGM-VEKDIVCWSAMIQGYASNGLPR 288

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            A+ELF +M +  V+PD  + + AL +C   G ++ G      M       N     S++
Sbjct: 289 EAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLI 348

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           D   + G ++EA  + K +    D V++  ++    +YG V  A
Sbjct: 349 DFYAKCGSMEEALGVYKMMK-EKDRVVFNAVISGLAMYGQVGAA 391


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/544 (39%), Positives = 329/544 (60%), Gaps = 7/544 (1%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           SK+  F ALSP  +L YA  L       ++  +N +LR  + +  PT         L   
Sbjct: 31  SKVFTFAALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSMP 90

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
              D  T  F LK C+R        Q+H+ + + GF  D  +   LL +Y++ G+++ A+
Sbjct: 91  SPPDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLAR 150

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
            +FD M  RD+ SW ++I GL   +L  EA++LF+RM   GV + NE TV+  L AC   
Sbjct: 151 SLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGV-EVNEATVISVLRACADS 209

Query: 224 GAWKEGDKIHEYIREERLDMNVV--VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
           GA   G K+H  + E  ++++    V  A++DMYAK G +  A +VFD++  R   V W 
Sbjct: 210 GALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRDVFV-WT 268

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN- 340
            M+   A HG    A+++F  M  +GVKPD+ +  A L AC +AGL+ +G  LF+ +   
Sbjct: 269 AMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRR 328

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE- 399
            G+KP+++H+G +VDLL RAGRL+EA D V ++ +  D VLW+TL+ AC+++GD + AE 
Sbjct: 329 YGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHGDADRAER 388

Query: 400 -IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGV 458
            +   ++ +M +++ G ++L SN+YA+  +W +   VR+ M  + + K PG S IEV G 
Sbjct: 389 LMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRELMNKKGLVKPPGTSRIEVDGG 448

Query: 459 IHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKL 518
           +H+F   D +H +  EI+ +L E++ KI++ GY    S VL ++ +EEK   L +HSEKL
Sbjct: 449 VHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYDPRVSEVLLEMDDEEKAVQLLHHSEKL 508

Query: 519 AVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSC 578
           A+A+GLI     ++I++ KNLR C DCH+ +KLISK+Y R+IIVRDR+RFH FK+G CSC
Sbjct: 509 ALAYGLIRIGHGSTIRIVKNLRSCEDCHEFMKLISKIYKRDIIVRDRIRFHHFKNGECSC 568

Query: 579 KDYW 582
           KDYW
Sbjct: 569 KDYW 572


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/612 (36%), Positives = 362/612 (59%), Gaps = 44/612 (7%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +L++CSS      +H +    +L  +    +KL     +++      PL+  +Y   LF 
Sbjct: 14  ILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLL----RLVTALPHVPLH--SYPRLLFS 67

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           Q++ P+   + A++R  A     + A+ +Y  M +      + T S    ACA V     
Sbjct: 68  QLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSAL 127

Query: 127 TLQIHSH-VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG--------------- 170
             Q+H+  +L  GF +D  +   ++D+Y K G +  A+ VFDEM                
Sbjct: 128 GAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYT 187

Query: 171 ----------------VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
                           V+D+ +W A++ G AQ  +  +A+++F+R++ EGV + +EVT++
Sbjct: 188 RIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGV-EIDEVTLV 246

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDM--NVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           G ++AC  LGA K  + I +        +  NV+V +A+IDMY+KCG +++A++VF  ++
Sbjct: 247 GVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMR 306

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
            R ++ ++++M++ FA+HG    A++LF  M   GVKP+ V+++  L AC+HAGLVD G 
Sbjct: 307 ER-NVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQ 365

Query: 333 RLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           +LF SM  C GV P  + Y  + DLL RAG L++A  +V+++ M +D  +W  LLGA  +
Sbjct: 366 QLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHV 425

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           +G+ ++AEIAS++L E+  +N G+++LLSN YA+  RWDDV +VRK ++ +++KK PG+S
Sbjct: 426 HGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWS 485

Query: 452 YIEV-GGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           ++E   G+IHKF   D SH K  EI ++L++++ ++K  GY    S + + I + EK   
Sbjct: 486 WVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLL 545

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           L  HSEKLA+AFGL+ST   ++I++ KNLRIC DCH V+   SKV  R+I+VRD  RFH 
Sbjct: 546 LMAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHH 605

Query: 571 FKDGACSCKDYW 582
           F +GACSC ++W
Sbjct: 606 FLNGACSCSNFW 617


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/551 (40%), Positives = 324/551 (58%), Gaps = 23/551 (4%)

Query: 40  FPVRSKI-----IEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
            PVR KI     I  YA + L  L+ A  LF ++       + A++ G   +     A  
Sbjct: 241 MPVRDKISWNIMITGYAQNGL--LSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATR 298

Query: 95  WYRQMLRGSHRS-DALTCSFAL-KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV 152
            + +M   +  S +A+   +   +   +   LF+ +             +     T++  
Sbjct: 299 IFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR----------NTSSWNTMVTG 348

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           YA+ G I  AK +FDEM  RD  SW A+I+G AQ   + EA+ LF +MK +G    N   
Sbjct: 349 YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGI-LNRSA 407

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           +  AL++C  + A + G ++H  + +       +  NA++ MY KCG +++AF+VF++I 
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDI- 466

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K +V+WNTM+  +A HG G  AL LFE M +  +KPDDV+ +  L AC+H GLVD G+
Sbjct: 467 TEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGM 525

Query: 333 RLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             FNSM  N G+  N KHY  ++DLLGRAGRL EA +++KS+    D   W  LLGA ++
Sbjct: 526 EYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRI 585

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           +GD E+ E A+ K+ EM  +N G +VLLSNLYAA  RW +V  +R  M+++ VKKVPG+S
Sbjct: 586 HGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYS 645

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
           ++E+    H F   D SH +   IY  L+E+  ++K+ G+ + T  VLHD+ EEEKE+ L
Sbjct: 646 WVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHML 705

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
            YHSEKLAVAFG++S      I+V KNLR+C DCH+ IK ISK+  R+IIVRD  RFH F
Sbjct: 706 KYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHF 765

Query: 572 KDGACSCKDYW 582
            +G+CSC DYW
Sbjct: 766 SEGSCSCGDYW 776



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 137/285 (48%), Gaps = 26/285 (9%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +    +L  Y K G + +A+ +F++M  +D+ SWNA+++G AQ     EA  +F +M 
Sbjct: 121 DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML 180

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           ++     NE++  G L+A    G  ++  ++     + ++D  +V  N ++  Y +   L
Sbjct: 181 VK-----NEISWNGLLSAYVQNGRIEDARRLF----DSKMDWEIVSWNCLMGGYVRKKRL 231

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP--DDVSYLAAL 319
           D A  +FD +  R   ++WN M+  +A +G    A  LFE++      P  D  ++ A +
Sbjct: 232 DDARSLFDRMPVRDK-ISWNIMITGYAQNGLLSEARRLFEEL------PIRDVFAWTAMV 284

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
                 G++D+  R+F  M     + N   + +++    ++ ++++A ++   +    + 
Sbjct: 285 SGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMP-SRNT 339

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
             W T++      G+++ A+I      EM   +C  +  + + YA
Sbjct: 340 SSWNTMVTGYAQCGNIDQAKIL---FDEMPQRDCISWAAMISGYA 381


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/564 (38%), Positives = 352/564 (62%), Gaps = 11/564 (1%)

Query: 25  LQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLA 84
           L  HL   G  Q     + +K+I  Y  S L+ +  A  +F +    +   +NA+ R L 
Sbjct: 100 LHRHLIHDGSDQDPF--LATKLINMY--SELDSIDNARKVFDKTRKRTIYVWNALFRALT 155

Query: 85  HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC----ARVLALFETLQIHSHVLRHGFL 140
            +      +  YR+M R    SD  T ++ LKAC    A V  L    +IH H+LRHGF 
Sbjct: 156 LAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFE 215

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
               + TTLLD+YA+ G +++A +VFD+M V+++ SW+A+IA  ++     EA++LF++M
Sbjct: 216 GHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKM 275

Query: 201 KMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
            +E     PN VT++  L AC  L A ++G  +H YI    LD  + V +A++ +YA+CG
Sbjct: 276 MLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCG 335

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            L+    VF+ ++ ++ +V+WN+++ ++ +HG G +A+++F++M   G+ P  +S+++ L
Sbjct: 336 NLELGHRVFERME-KRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVL 394

Query: 320 CACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
            AC+HAGLV++G  LF SM     + P+++HY  +VDLLGRA RL EA  I+  + +   
Sbjct: 395 GACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPG 454

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
             +W +LLG+C+++ +VE+AE A+ +L E+   N G++VLL+++YA  + W++V RV+  
Sbjct: 455 PKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKML 514

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           ++ R ++KVPG S IE+   I+ F + D+ + +  +++  L ++  ++KE GY   T  V
Sbjct: 515 LEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVV 574

Query: 499 LHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNR 558
           L+D+  EEKE  +  HSEKLA+AFGLI++ +  +I++ KNLR+C DCH V K ISK  NR
Sbjct: 575 LYDLDPEEKERIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANR 634

Query: 559 EIIVRDRVRFHRFKDGACSCKDYW 582
           EI+VRD  RFH F+DG CSC DYW
Sbjct: 635 EILVRDVNRFHLFQDGVCSCGDYW 658



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 172/367 (46%), Gaps = 16/367 (4%)

Query: 51  ALSPLNE--LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDA 108
           A+SP  +  LA   +   + N  S N+ N +++ L        A+    Q+L        
Sbjct: 24  AISPKPQCCLALRPSTTTRSNGDSNNN-NPLIQSLCKQGNLNQAL----QVLSQEPNPTQ 78

Query: 109 LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE 168
            T    + +C R  +L + + +H H++  G   D  L T L+++Y+++  I +A+KVFD+
Sbjct: 79  HTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDK 138

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC----GHLG 224
              R I  WNAL   L       E +DL++RM   GV   +  T    L AC      + 
Sbjct: 139 TRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGV-PSDRFTYTYVLKACVASEAFVS 197

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
               G +IH +I     + +V +   ++DMYA+ G +  A  VFD +   K++V+W+ M+
Sbjct: 198 LLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPV-KNVVSWSAMI 256

Query: 285 MAFAVHGDGPRALELFEQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
             ++ +G    ALELF +M      + P+ V+ ++ L AC     ++ G  +   +   G
Sbjct: 257 ACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRG 316

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           +   +    ++V +  R G L+    + + +    D+V W +L+ +  ++G    A    
Sbjct: 317 LDSILPVVSALVTVYARCGNLELGHRVFERME-KRDVVSWNSLISSYGIHGFGRKAIQIF 375

Query: 403 RKLVEMG 409
           +++++ G
Sbjct: 376 KEMIDQG 382


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 237/589 (40%), Positives = 350/589 (59%), Gaps = 12/589 (2%)

Query: 2   ANLNALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFP---VRSKIIEFYALSPL 55
           + L ALL   +  GA++    +H   ++A L      +SKL     + + +++ YA    
Sbjct: 114 STLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYA--KC 171

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFA 114
             L YA  +F  + A +   ++A++ G    S+ T A L ++ ML +G       + + A
Sbjct: 172 GSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASA 231

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ACA +  L    Q+H+ + + G  AD   G +LL +YAK G I  A  +FDEM V+D 
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 291

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            S++AL++G  Q   A EA  +FK+M+   V +P+  T++  + AC HL A + G   H 
Sbjct: 292 VSYSALVSGYVQNGRAEEAFLVFKKMQACNV-EPDAATMVSLIPACSHLAALQHGRCSHG 350

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            +    L     +CNA+IDMYAKCG +D + +VF N+   + +V+WNTM+  + +HG G 
Sbjct: 351 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVF-NMMPSRDIVSWNTMIAGYGIHGLGK 409

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSV 353
            A  LF +M   G  PD V+++  L AC+H+GLV +G   F+ M +  G+ P M+HY  +
Sbjct: 410 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 469

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VDLL R G L EA + ++S+ +  D+ +W  LLGAC++Y ++++ +  SR + E+G    
Sbjct: 470 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 529

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
           G+FVLLSN+Y+A  R+D+   VR   K +  KK PG S+IE+ G +H F   D+SH +  
Sbjct: 530 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSP 589

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           EIY +LD I+  IK+ GY   TS VL D+ EEEKE AL  HSEKLA+A+G++S SE  +I
Sbjct: 590 EIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTI 649

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            V KNLR+C DCH VIK IS V  R IIVRD  RFH FK+G CSC D+W
Sbjct: 650 FVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 192/392 (48%), Gaps = 22/392 (5%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAV- 93
            Q+ LF V + +++ Y       L  A  +F  + A     +NA+L G AH     +AV 
Sbjct: 41  LQADLF-VSTALLDMYVKCAC--LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVA 97

Query: 94  -LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF---------LADA 143
            L   QM     R +A T    L   A+  AL +   +H++ +R            L D 
Sbjct: 98  HLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDG 157

Query: 144 -LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
            LLGT LLD+YAK G ++ A++VFD M  R+  +W+ALI G    +  ++A  LFK M  
Sbjct: 158 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 217

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           +G+   +  ++  AL AC  L   + G+++H  + +  +  ++   N+++ MYAK GL+D
Sbjct: 218 QGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLID 277

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
           +A  +FD +  + + V+++ +V  +  +G    A  +F++M    V+PD  + ++ + AC
Sbjct: 278 QAIALFDEMAVKDT-VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           +H   +  G     S+   G+        +++D+  + GR+  +  +   +    D+V W
Sbjct: 337 SHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSW 395

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
            T++     YG   + + A+   +EM  NN G
Sbjct: 396 NTMIAG---YGIHGLGKEATALFLEM--NNLG 422



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 151/321 (47%), Gaps = 18/321 (5%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           MLR     +  T  FALKAC+ +        IH H +  G  AD  + T LLD+Y K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME-GVFKPNEVTVLGAL 217
           +  A  +F  M  RD+ +WNA++AG A   +   AV     M+M+    +PN  T++  L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 218 AACGHLGAWKEGDKIHEY-IR---------EERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
                 GA  +G  +H Y IR         + +L   V++  A++DMYAKCG L  A  V
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM---GRAGVKPDDVSYLAALCACNH 324
           FD +  R   VTW+ ++  F +     +A  LF+ M   G   + P  ++  +AL AC  
Sbjct: 181 FDAMPARNE-VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACAS 237

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
              +  G +L   +A  GV  ++    S++ +  +AG + +A  +   +++  D V +  
Sbjct: 238 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAV-KDTVSYSA 296

Query: 385 LLGACQLYGDVEMAEIASRKL 405
           L+      G  E A +  +K+
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKM 317


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/582 (38%), Positives = 361/582 (62%), Gaps = 13/582 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           L+  C+   ++  +  +++  HL   G  Q       +K+I  Y+    + +  A  +F 
Sbjct: 76  LILSCTHQNSL--LDAQRVHRHLLENGFDQDPFLA--TKLINMYSF--FDSIDNARKVFD 129

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR----VL 122
           +    +   +NA+ R L+ +      +  YR+M      SD  T ++ LKAC      V 
Sbjct: 130 KTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVS 189

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            L +  +IH+H+LRHG+     + TTL+D+YAK G + +A  VF++M V+++ SW+A+IA
Sbjct: 190 LLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIA 249

Query: 183 GLAQGNLASEAVDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
             A+   A EA++LF+ + +E     PN VT++  L AC  L A ++G  IH YI  + L
Sbjct: 250 CYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGL 309

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           D  + V +A++ MYA+CG L+    VFD +  ++ +V+WN+++ ++ VHG G +A+ +FE
Sbjct: 310 DSILPVISALVTMYARCGKLELGQRVFDQMD-KRDVVSWNSLISSYGVHGFGKKAIGIFE 368

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRA 360
           +M   GV+P  +S+++ L AC+HAGLVD+G  LFNSM    G+ P+++HY  +VDLLGRA
Sbjct: 369 EMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRA 428

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
            RL+EA  I++++ +     +W +LLG+C+++ +VE+AE AS +L ++   N G++VLL+
Sbjct: 429 NRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLA 488

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           ++YA    WD V RV+K ++ R ++KVPG S+IEV   I+ F + D+ + +  +++  L 
Sbjct: 489 DIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLV 548

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           ++  ++KE GY   T  VL+D+   EKE  +  HSEKLAVAFGLI++S+   I++ K+LR
Sbjct: 549 KLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLR 608

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +C DCH   K ISK  N+EI+VRD  RFH F+DG CSC DYW
Sbjct: 609 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 156/328 (47%), Gaps = 13/328 (3%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIH 131
           ST D N +++ L      T A+    ++L         T    + +C    +L +  ++H
Sbjct: 38  STADNNKLIQSLCKQGNLTQAL----ELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVH 93

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
            H+L +GF  D  L T L+++Y+    I +A+KVFD+   R I  +NAL   L+      
Sbjct: 94  RHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGE 153

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAAC----GHLGAWKEGDKIHEYIREERLDMNVVV 247
           E +++++RM   G+   +  T    L AC      +    +G +IH +I     D  V +
Sbjct: 154 EVLNMYRRMNSIGI-PSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHI 212

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ--MGR 305
              ++DMYAK G +  A  VF+ +   K++V+W+ M+  +A +G    ALELF +  +  
Sbjct: 213 MTTLVDMYAKFGCVSNASCVFNQMPV-KNVVSWSAMIACYAKNGKAFEALELFRELMLET 271

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
             + P+ V+ ++ L AC     ++ G  +   +   G+   +    ++V +  R G+L+ 
Sbjct: 272 QDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLEL 331

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYG 393
              +   +    D+V W +L+ +  ++G
Sbjct: 332 GQRVFDQMD-KRDVVSWNSLISSYGVHG 358


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/508 (39%), Positives = 307/508 (60%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N V+ G A S    +A+   R+M     + DA T S  L   +  + + +  +IH +V+
Sbjct: 174 YNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVI 233

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R G  +D  +G++L+D+YAK   I  +++VF  +  RD  SWN+L+AG  Q    +EA+ 
Sbjct: 234 RKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALR 293

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF++M +    +P  V     + AC HL     G ++H Y+       N+ + +A++DMY
Sbjct: 294 LFRQM-VSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMY 352

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCG +  A ++FD +      V+W  ++M  A+HG G  A+ LFE+M R GVKP+ V++
Sbjct: 353 SKCGNIQAARKIFDRMNLHDE-VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAF 411

Query: 316 LAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +A L AC+H GLVD+    FNSM    G+   ++HY +V DLLGRAG+L+EA D +  + 
Sbjct: 412 VAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMR 471

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +     +W TLL +C ++ ++E+AE  + K+  + S N G +VL+ N+YA+  RW ++ +
Sbjct: 472 VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAK 531

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R  ++ + ++K P  S+IE+    H F + D+SH     I E L  +M ++++ GY A 
Sbjct: 532 LRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVAD 591

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           TS VLHD+ EE K   L  HSE+LAVAFG+I+T   T+I+V KN+RIC DCH  IK ISK
Sbjct: 592 TSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISK 651

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +  REIIVRD  RFH F  G+CSC DYW
Sbjct: 652 ITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 189/395 (47%), Gaps = 10/395 (2%)

Query: 1   MANLNALLQKCSSNGA--VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNEL 58
           M++  AL++    N     S    KQL A    T   QS      S +I  Y  + L  L
Sbjct: 1   MSSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRT---QSLSHTSASIVISIY--TNLKLL 55

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
             A  +F+ + +P    + +V+R     S  + A+  + +M       D       LK+C
Sbjct: 56  HEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSC 115

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
             ++ L     +H  ++R G   D   G  L+++Y+K+  I S +KVF+ M  +D+ S+N
Sbjct: 116 TMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYN 175

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
            +IAG AQ  +  +A+ + + M    + KP+  T+   L          +G +IH Y+  
Sbjct: 176 TVIAGYAQSGMYEDALRMVREMGTSDL-KPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIR 234

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           + +D +V + ++++DMYAK   ++ +  VF ++  R S ++WN++V  +  +G    AL 
Sbjct: 235 KGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDS-ISWNSLVAGYVQNGRYNEALR 293

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LF QM  A V+P  V++ + + AC H   +  G +L   +   G   N+    ++VD+  
Sbjct: 294 LFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYS 353

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + G +Q A  I   +++  D V W  ++    L+G
Sbjct: 354 KCGNIQAARKIFDRMNL-HDEVSWTAIIMGHALHG 387



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 143/283 (50%), Gaps = 8/283 (2%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           + S +++ YA S    +  +  +F  +    +  +N+++ G   + +   A+  +RQM+ 
Sbjct: 243 IGSSLVDMYAKSA--RIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVS 300

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              R  A+  S  + ACA +  L    Q+H +VLR GF  +  + + L+D+Y+K G I +
Sbjct: 301 AKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQA 360

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+K+FD M + D  SW A+I G A      EAV LF+ MK +GV KPN+V  +  L AC 
Sbjct: 361 ARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGV-KPNQVAFVAVLTACS 419

Query: 222 HLGAWKEG-DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
           H+G   E     +   +   L+  +    AV D+  + G L++A++    ++   +   W
Sbjct: 420 HVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVW 479

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           +T++ + +VH    + LEL E++       D  +  A +  CN
Sbjct: 480 STLLSSCSVH----KNLELAEKVAEKIFTIDSENMGAYVLMCN 518


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/589 (40%), Positives = 352/589 (59%), Gaps = 12/589 (2%)

Query: 2   ANLNALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFP---VRSKIIEFYALSPL 55
           + L ALL   +  GA++    +H  +++A L +    +SKL     + + +++ YA    
Sbjct: 229 STLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYA--KC 286

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFA 114
             L YA  +F  + A +   ++A++ G    S+ T A L ++ ML +G       + + A
Sbjct: 287 GSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASA 346

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ACA +  L    Q+H+ + + G  AD   G +LL +YAK G I  A  +FDEM V+D 
Sbjct: 347 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 406

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            S++AL++G  Q   A EA  +FK+M+   V +P+  T++  + AC HL A + G   H 
Sbjct: 407 VSYSALVSGYVQNGRAEEAFLVFKKMQACNV-EPDAATMVSLIPACSHLAALQHGRCSHG 465

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            +    L     +CNA+IDMYAKCG +D + +VF N+   + +V+WNTM+  + +HG G 
Sbjct: 466 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVF-NMMPSRDIVSWNTMIAGYGIHGLGK 524

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSV 353
            A  LF +M   G  PD V+++  L AC+H+GLV +G   F+ M +  G+ P M+HY  +
Sbjct: 525 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICM 584

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VDLL R G L EA + ++S+ +  D+ +W  LLGAC++Y ++++ +  SR + E+G    
Sbjct: 585 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 644

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
           G+FVLLSN+Y+A  R+D+   VR   K +  KK PG S+IE+ G +H F   D+SH +  
Sbjct: 645 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSP 704

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           EIY +LD I+  IK+ GY   TS VL D+ EEEKE AL  HSEKLA+A+G++S SE  +I
Sbjct: 705 EIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTI 764

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            V KNLR+C DCH VIK IS +  R IIVRD  RFH FK+G CSC D+W
Sbjct: 765 FVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 176/366 (48%), Gaps = 22/366 (6%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNA---VLWYRQMLRGSHRSDALTCSF 113
            L+ AH LF QI +P    +N ++R  + SS PT A   +  YR+MLR     +  T  F
Sbjct: 72  HLSRAHHLFDQIPSPDVRTYNDLIRAYS-SSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           ALKAC+ +        IH H +  G  AD  + T LLD+Y K   +  A  +F  M  RD
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKME-GVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           + +WNA++AG A   +   AV     M+M+    +PN  T++  L      GA  +G  +
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 233 HEY-IR---------EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           H Y IR         + +L   V++  A++DMYAKCG L  A  VFD +  R   VTW+ 
Sbjct: 251 HAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE-VTWSA 309

Query: 283 MVMAFAVHGDGPRALELFEQM---GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           ++  F +     +A  LF+ M   G   + P  ++  +AL AC     +  G +L   +A
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHALLA 367

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             GV  ++    S++ +  +AG + +A  +   +++  D V +  L+      G  E A 
Sbjct: 368 KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAV-KDTVSYSALVSGYVQNGRAEEAF 426

Query: 400 IASRKL 405
           +  +K+
Sbjct: 427 LVFKKM 432


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 237/589 (40%), Positives = 350/589 (59%), Gaps = 12/589 (2%)

Query: 2   ANLNALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFP---VRSKIIEFYALSPL 55
           + L ALL   +  GA++    +H   ++A L      +SKL     + + +++ YA    
Sbjct: 229 STLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYA--KC 286

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFA 114
             L YA  +F  + A +   ++A++ G    S+ T A L ++ ML +G       + + A
Sbjct: 287 GSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASA 346

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ACA +  L    Q+H+ + + G  AD   G +LL +YAK G I  A  +FDEM V+D 
Sbjct: 347 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 406

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            S++AL++G  Q   A EA  +FK+M+   V +P+  T++  + AC HL A + G   H 
Sbjct: 407 VSYSALVSGYVQNGRAEEAFLVFKKMQACNV-EPDAATMVSLIPACSHLAALQHGRCSHG 465

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            +    L     +CNA+IDMYAKCG +D + +VF N+   + +V+WNTM+  + +HG G 
Sbjct: 466 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVF-NMMPSRDIVSWNTMIAGYGIHGLGK 524

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSV 353
            A  LF +M   G  PD V+++  L AC+H+GLV +G   F+ M +  G+ P M+HY  +
Sbjct: 525 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 584

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VDLL R G L EA + ++S+ +  D+ +W  LLGAC++Y ++++ +  SR + E+G    
Sbjct: 585 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 644

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
           G+FVLLSN+Y+A  R+D+   VR   K +  KK PG S+IE+ G +H F   D+SH +  
Sbjct: 645 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSP 704

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           EIY +LD I+  IK+ GY   TS VL D+ EEEKE AL  HSEKLA+A+G++S SE  +I
Sbjct: 705 EIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTI 764

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            V KNLR+C DCH VIK IS V  R IIVRD  RFH FK+G CSC D+W
Sbjct: 765 FVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 176/366 (48%), Gaps = 22/366 (6%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNA---VLWYRQMLRGSHRSDALTCSF 113
            L+ AH LF QI +P    +N ++R  + SS PT A   +  YR+MLR     +  T  F
Sbjct: 72  HLSRAHHLFDQIPSPDVRTYNDLIRAYS-SSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           ALKAC+ +        IH H +  G  AD  + T LLD+Y K   +  A  +F  M  RD
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKME-GVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           + +WNA++AG A   +   AV     M+M+    +PN  T++  L      GA  +G  +
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 233 HEY-IR---------EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           H Y IR         + +L   V++  A++DMYAKCG L  A  VFD +  R   VTW+ 
Sbjct: 251 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE-VTWSA 309

Query: 283 MVMAFAVHGDGPRALELFEQM---GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           ++  F +     +A  LF+ M   G   + P  ++  +AL AC     +  G +L   +A
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHALLA 367

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             GV  ++    S++ +  +AG + +A  +   +++  D V +  L+      G  E A 
Sbjct: 368 KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAV-KDTVSYSALVSGYVQNGRAEEAF 426

Query: 400 IASRKL 405
           +  +K+
Sbjct: 427 LVFKKM 432


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/565 (38%), Positives = 341/565 (60%), Gaps = 11/565 (1%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           ++  H+   G  Q       +K+I  Y  S L  + YA  +F +    +   +NA+ R L
Sbjct: 98  RVHRHILDNGSDQDPFLA--TKLIGMY--SDLGSVDYARKVFDKTRKRTIYVWNALFRAL 153

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA----RVLALFETLQIHSHVLRHGF 139
             +      +  Y +M R    SD  T ++ LKAC      V  L +  +IH+H+ R G+
Sbjct: 154 TLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGY 213

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
            +   + TTL+D+YA+ G +  A  VF  M VR++ SW+A+IA  A+   A EA+  F+ 
Sbjct: 214 SSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFRE 273

Query: 200 MKMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
           M  E     PN VT++  L AC  L A ++G  IH YI    LD  + V +A++ MY +C
Sbjct: 274 MMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRC 333

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G L+    VFD +  R  +V+WN+++ ++ VHG G +A+++FE+M   G  P  V++++ 
Sbjct: 334 GKLEVGQRVFDRMHDR-DVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSV 392

Query: 319 LCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           L AC+H GLV++G RLF +M  + G+KP ++HY  +VDLLGRA RL EA  +V+ +    
Sbjct: 393 LGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEP 452

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
              +W +LLG+C+++G+VE+AE ASR+L  +   N G++VLL+++YA  + WD+V RV+K
Sbjct: 453 GPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKK 512

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            +++R ++K+PG  ++EV   ++ F + D+ +    +I+  L ++   +KE GY   T  
Sbjct: 513 LLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKG 572

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           VL+++  EEKE  +  HSEKLA+AFGLI+TS+   I++ KNLR+C DCH   K ISK   
Sbjct: 573 VLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFME 632

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           +EI+VRD  RFHRFK+G CSC DYW
Sbjct: 633 KEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 163/363 (44%), Gaps = 30/363 (8%)

Query: 47  IEFYALSPLNELAYAHALFRQINAPSTND-------FNAVLRGLAHSSKPTNAVLWYRQM 99
           + F   SPL   + + AL    N PS +         N +++ L    K   A+    ++
Sbjct: 17  VNFLPRSPLKPPSCSVAL----NNPSISSGAGAKISNNQLIQSLCKEGKLKQAI----RV 68

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
           L         T    +  C    +L + L++H H+L +G   D  L T L+ +Y+ +G +
Sbjct: 69  LSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSV 128

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
             A+KVFD+   R I  WNAL   L       E + L+ +M   GV + +  T    L A
Sbjct: 129 DYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGV-ESDRFTYTYVLKA 187

Query: 220 C-------GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           C        HL    +G +IH ++       +V +   ++DMYA+ G +D A  VF  + 
Sbjct: 188 CVASECTVNHL---MKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMP 244

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR--AGVKPDDVSYLAALCACNHAGLVDD 330
            R ++V+W+ M+  +A +G    AL  F +M R      P+ V+ ++ L AC     ++ 
Sbjct: 245 VR-NVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQ 303

Query: 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
           G  +   +   G+   +    ++V + GR G+L+    +   +    D+V W +L+ +  
Sbjct: 304 GKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMH-DRDVVSWNSLISSYG 362

Query: 391 LYG 393
           ++G
Sbjct: 363 VHG 365


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/565 (38%), Positives = 341/565 (60%), Gaps = 11/565 (1%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           ++  H+   G  Q       +K+I  Y  S L  + YA  +F +    +   +NA+ R L
Sbjct: 98  RVHRHILDNGSDQDPFLA--TKLIGMY--SDLGSVDYARKVFDKTRKRTIYVWNALFRAL 153

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL----QIHSHVLRHGF 139
             +      +  Y +M R    SD  T ++ LKAC       + L    +IH+H+ R G+
Sbjct: 154 TLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGY 213

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
            +   + TTL+D+YA+ G +  A  VF+ M VR++ SW+A+IA  A+   A EA+  F+ 
Sbjct: 214 NSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFRE 273

Query: 200 MKMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
           M  E     PN VT++  L AC  L A ++G  IH YI    LD  + V +A++ MY +C
Sbjct: 274 MMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRC 333

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G LD    VFD +  R  +V+WN+++ ++ VHG G +A+++FE+M   G  P  V++++ 
Sbjct: 334 GKLDVGQRVFDRMHDR-DVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSV 392

Query: 319 LCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           L AC+H GLV++G RLF SM  + G+KP ++HY  +VDLLGRA RL EA  +V+ +    
Sbjct: 393 LGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEP 452

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
              +W +LLG+C+++G+VE+AE ASR+L  +   N G++VLL+++YA  + WD+V RV+K
Sbjct: 453 GPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKK 512

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            +++R ++K+PG  ++EV   ++ F + D+ +    +I+  L ++   +KE GY   T  
Sbjct: 513 LLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKG 572

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           VL+++  EEKE  +  HSEKLA+AFGLI+TS+   I++ KNLR+C DCH   K ISK   
Sbjct: 573 VLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFME 632

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           +EI+VRD  RFHRFK+G CSC DYW
Sbjct: 633 KEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 137/285 (48%), Gaps = 15/285 (5%)

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C    +L + L++H H+L +G   D  L T L+ +Y+ +G +  A+KVFD+   R I  W
Sbjct: 87  CGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVW 146

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC-------GHLGAWKEGD 230
           NAL   L       E + L+ +M   GV + +  T    L AC        HL    +G 
Sbjct: 147 NALFRALTLAGHGEEVLGLYWKMNRIGV-ESDRFTYTYVLKACVASECTADHL---TKGK 202

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           +IH ++     + +V +   ++DMYA+ G +D A  VF+ +  R ++V+W+ M+  +A +
Sbjct: 203 EIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVR-NVVSWSAMIACYAKN 261

Query: 291 GDGPRALELFEQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK 348
           G    AL  F +M        P+ V+ ++ L AC     ++ G  +   +   G+   + 
Sbjct: 262 GKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILP 321

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
              ++V + GR G+L     +   +    D+V W +L+ +  ++G
Sbjct: 322 VISALVTMYGRCGKLDVGQRVFDRMH-DRDVVSWNSLISSYGVHG 365



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 7/186 (3%)

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           P++ T    +  CGH  +  +G ++H +I +   D +  +   +I MY+  G +D A +V
Sbjct: 75  PSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           FD  + ++++  WN +  A  + G G   L L+ +M R GV+ D  +Y   L AC  +  
Sbjct: 135 FDKTR-KRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASEC 193

Query: 328 VDD----GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
             D    G  +   +   G   ++    ++VD+  R G +  A  +   + +  ++V W 
Sbjct: 194 TADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPV-RNVVSWS 252

Query: 384 TLLGAC 389
            ++ AC
Sbjct: 253 AMI-AC 257


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/521 (38%), Positives = 327/521 (62%), Gaps = 4/521 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSK-PTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           +F Q+   +   + A++   A S +    A+  + +M+ G  R +  + S  LKAC  + 
Sbjct: 111 VFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 170

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
             +   Q++S+ ++ G  +   +G +L+ +YA+ G +  A+K FD +  +++ S+NA++ 
Sbjct: 171 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 230

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G A+   + EA  LF  +   G+   +  T    L+    +GA  +G++IH  + +    
Sbjct: 231 GYAKNLKSEEAFLLFNEIADTGI-GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK 289

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            N  +CNA+I MY++CG ++ AF+VF+ ++ R ++++W +M+  FA HG   RALE+F +
Sbjct: 290 SNQCICNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHK 348

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAG 361
           M   G KP++++Y+A L AC+H G++ +G + FNSM    G+ P M+HY  +VDLLGR+G
Sbjct: 349 MLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSG 408

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L EA + + S+ +  D ++W+TLLGAC+++G+ E+   A+  ++E   ++   ++LLSN
Sbjct: 409 LLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSN 468

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           L+A+  +W DV ++RK+MK R++ K  G S+IEV   +H+F   + SH +  +IY++LD+
Sbjct: 469 LHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQ 528

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           +  KIKE GY   T  VLHDI EE+KE  L  HSEK+AVAFGLISTS++  I++FKNLR+
Sbjct: 529 LASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRV 588

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH  IK IS    REI+VRD  RFH  K+G CSC DYW
Sbjct: 589 CGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 169/356 (47%), Gaps = 7/356 (1%)

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
           A A+ +F ++   +   +  ++   A      +A+  +  M    +  D  T S  L AC
Sbjct: 2   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV---GEIVSAKKVFDEMGVRDIA 175
             +  L    Q+HS V+R G   D  +G +L+D+YAK    G +  ++KVF++M   ++ 
Sbjct: 62  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 121

Query: 176 SWNALIAGLAQ-GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
           SW A+I   AQ G    EA++LF +M + G  +PN  +    L ACG+L     G++++ 
Sbjct: 122 SWTAIITAYAQSGECDKEAIELFCKM-ISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 180

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           Y  +  +     V N++I MYA+ G ++ A + FD I   K+LV++N +V  +A +    
Sbjct: 181 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD-ILFEKNLVSYNAIVDGYAKNLKSE 239

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            A  LF ++   G+     ++ + L      G +  G ++   +   G K N     +++
Sbjct: 240 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 299

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
            +  R G ++ A  +   +    +++ W +++     +G    A     K++E G+
Sbjct: 300 SMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 354


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/538 (38%), Positives = 329/538 (61%), Gaps = 6/538 (1%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +I+ YA     +L  A  +F       +  +N+++ G   S      +  ++ M++   +
Sbjct: 363 LIDMYA--KCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFK-MMKMERK 419

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            D++T    L   +++  + +   IH  V++ GF A+ ++G +LLDVYAK GE+    KV
Sbjct: 420 PDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKV 479

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           F  M   DI SWN +IA     +  +    +   M+ EG+  P+E TVLG L  C  L  
Sbjct: 480 FSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLM-PDEATVLGILPMCSLLAV 538

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            ++G +IH YI +   + NV + NA+I+MY+KCG L+   +VF  +K  K +VTW  ++ 
Sbjct: 539 RRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMK-EKDVVTWTALIS 597

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVK 344
           AF ++G+G +AL+ F+ M  +GV PD V+++A + AC+H+G+V +G+R F+ M  +  ++
Sbjct: 598 AFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLE 657

Query: 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRK 404
           P M+HY  VVDLL R+G L +A + + S+ M  D  LW  LL AC+  G+  +A+  S+K
Sbjct: 658 PRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKK 717

Query: 405 LVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFT 464
           ++E+ S++ G +VL+SN+YA   +WD V  VR +MK + +KK PG S+IE+   ++ F T
Sbjct: 718 ILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRT 777

Query: 465 SDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGL 524
            DKS  ++ ++ + L+ ++  + + GY A     LHD+ E++K + LC HSE+LA+AFGL
Sbjct: 778 GDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGL 837

Query: 525 ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++T   + + V KNLR+C DCH V K I+K+  REI+VRD  RFHRFKDGACSC D+W
Sbjct: 838 LNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 219/428 (51%), Gaps = 25/428 (5%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYAL--SPLNELAYAH 62
           ++LL+  SS  A +   ++ + + + T+G   S +F    K+I  YA    P++ ++   
Sbjct: 23  SSLLKTLSS--AKNTPQLRTVHSLIITSGLSLSVIFS--GKLISKYAQVKDPISSVS--- 75

Query: 63  ALFRQINAPSTNDF--NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
            +FR I +P+ N +  N+++R L H+   T A+ +Y +M     + DA T    + +CAR
Sbjct: 76  -VFRSI-SPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCAR 133

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +L L     +H H +  GF +D  +G  L+D+Y++  ++ +A+ VF+EM  RD  SWN+L
Sbjct: 134 ILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSL 193

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I+G        +A+D++ + +M G+  P+  T+   L ACG L A KEG  +H  I +  
Sbjct: 194 ISGYCSNGFWEDALDMYHKFRMTGMV-PDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIG 252

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           +  +V++ N ++ MY K   L +A  VF  +  + S VTWNTM+  +A  G    +++LF
Sbjct: 253 IAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDS-VTWNTMICGYAQLGRHEASVKLF 311

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
             M   G  PD +S  + + AC  +G +  G  +   +   G + +      ++D+  + 
Sbjct: 312 MDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKC 370

Query: 361 GRL---QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN-NCGDF 416
           G L   QE  D  K      D V W +L+      G  +   + S K+++M    +   F
Sbjct: 371 GDLLAAQEVFDTTKC----KDSVTWNSLINGYTQSGYYKEG-LESFKMMKMERKPDSVTF 425

Query: 417 VLLSNLYA 424
           VLL ++++
Sbjct: 426 VLLLSIFS 433


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/521 (38%), Positives = 327/521 (62%), Gaps = 4/521 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSK-PTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           +F Q+   +   + A++   A S +    A+  + +M+ G  R +  + S  LKAC  + 
Sbjct: 116 VFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 175

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
             +   Q++S+ ++ G  +   +G +L+ +YA+ G +  A+K FD +  +++ S+NA++ 
Sbjct: 176 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 235

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G A+   + EA  LF  +   G+   +  T    L+    +GA  +G++IH  + +    
Sbjct: 236 GYAKNLKSEEAFLLFNEIADTGI-GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK 294

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            N  +CNA+I MY++CG ++ AF+VF+ ++ R ++++W +M+  FA HG   RALE+F +
Sbjct: 295 SNQCICNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHK 353

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAG 361
           M   G KP++++Y+A L AC+H G++ +G + FNSM    G+ P M+HY  +VDLLGR+G
Sbjct: 354 MLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSG 413

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L EA + + S+ +  D ++W+TLLGAC+++G+ E+   A+  ++E   ++   ++LLSN
Sbjct: 414 LLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSN 473

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           L+A+  +W DV ++RK+MK R++ K  G S+IEV   +H+F   + SH +  +IY++LD+
Sbjct: 474 LHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQ 533

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           +  KIKE GY   T  VLHDI EE+KE  L  HSEK+AVAFGLISTS++  I++FKNLR+
Sbjct: 534 LASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRV 593

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH  IK IS    REI+VRD  RFH  K+G CSC DYW
Sbjct: 594 CGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 169/356 (47%), Gaps = 7/356 (1%)

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
           A A+ +F ++   +   +  ++   A      +A+  +  M    +  D  T S  L AC
Sbjct: 7   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV---GEIVSAKKVFDEMGVRDIA 175
             +  L    Q+HS V+R G   D  +G +L+D+YAK    G +  ++KVF++M   ++ 
Sbjct: 67  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 126

Query: 176 SWNALIAGLAQ-GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
           SW A+I   AQ G    EA++LF +M + G  +PN  +    L ACG+L     G++++ 
Sbjct: 127 SWTAIITAYAQSGECDKEAIELFCKM-ISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 185

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           Y  +  +     V N++I MYA+ G ++ A + FD I   K+LV++N +V  +A +    
Sbjct: 186 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD-ILFEKNLVSYNAIVDGYAKNLKSE 244

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            A  LF ++   G+     ++ + L      G +  G ++   +   G K N     +++
Sbjct: 245 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 304

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
            +  R G ++ A  +   +    +++ W +++     +G    A     K++E G+
Sbjct: 305 SMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 359


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/609 (36%), Positives = 352/609 (57%), Gaps = 44/609 (7%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFY-ALSPLNELAYAHAL 64
           +LLQ+      V  IH     A L   G  Q         + E   + S  + + YA  +
Sbjct: 54  SLLQRSKHINQVLPIH-----AQLIRNGHSQDPFM-----VFELLRSCSKCHAIDYASRI 103

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F+  + P+   + A++ G   S    +A+  Y +ML  S   D    +  LKAC   LAL
Sbjct: 104 FQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLAL 163

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV------------- 171
            E  ++HS  L+ G  ++ L+   ++++Y K GE+  A++VF+EM               
Sbjct: 164 REGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYS 223

Query: 172 -----------------RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
                            +D   W A+I G  +    + A++ F+ M+ E V +PNE T++
Sbjct: 224 DQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENV-RPNEFTIV 282

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L+AC  LGA + G  +H Y+R+  +++N+ V NA+I+MY++CG +D+A  VFD +K R
Sbjct: 283 CVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR 342

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
             ++T+NTM+   +++G   +A+ELF  M    ++P +V+++  L AC+H GLVD G ++
Sbjct: 343 -DVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKI 401

Query: 335 FNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           F+SM  + GV+P ++HYG +VDLLGR GRL+EA D+++++ M  D ++  TLL AC+++ 
Sbjct: 402 FHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHK 461

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           ++E+ E  ++ L + G  + G +VLLS++YA+  +W +  +VR  MK   ++K PG S I
Sbjct: 462 NLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 521

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           EV   IH+F   D  H +   IYEKL+E+   ++  GY      VL DI + EKE AL  
Sbjct: 522 EVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAI 581

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSE+LA+ +GLIST   T I+V KNLR+C DCH  IKLI+K+  R+++VRDR RFH F++
Sbjct: 582 HSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFEN 641

Query: 574 GACSCKDYW 582
           GACSC DYW
Sbjct: 642 GACSCGDYW 650


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/523 (39%), Positives = 314/523 (60%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  I   +   + A++ G   S     A+  ++++L    + D+ +    L ACAR
Sbjct: 168 ALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACAR 227

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +        I  ++   G   +  + T+LLD+Y K G +  A  +F  M  +DI SW+ +
Sbjct: 228 LGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTM 287

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G A   L  +A+DLF +M+ E + KP+  T++G L+AC  LGA   G      +    
Sbjct: 288 IQGYAFNGLPQQALDLFFQMQSENL-KPDCYTMVGVLSACATLGALDLGIWASSLMDRNE 346

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              N V+  A+IDMY+KCG + +A+E+F  +K RK  V WN M++  +++G       LF
Sbjct: 347 FLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK-RKDRVVWNAMMVGLSMNGHAKAVFSLF 405

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGR 359
             + + G++PD+ +++  LC C H G V++G + FN+M     + P+++HYG +VDLLGR
Sbjct: 406 SLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGR 465

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L EA  ++ ++ M  + V+W  LLG C+L+ D  +AE   +KL+E+   N G++V L
Sbjct: 466 AGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQL 525

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+Y+   RW++  ++R  MK + ++K+   S+IE+ G++H+F   DKSH    +IY KL
Sbjct: 526 SNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKL 585

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           DE+  ++K  G+   T  VL DI EEEKE+ L YHSEKLAVAFGLI++     I+V KNL
Sbjct: 586 DELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNL 645

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCHD IKLISK+  REII+RD  RFH F DG+CSC+DYW
Sbjct: 646 RVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 188/377 (49%), Gaps = 12/377 (3%)

Query: 17  VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF 76
           + HIH + L+ HL       +        +I   AL       Y+  +F Q+  P+   +
Sbjct: 32  LKHIHARLLRLHLDQDNYLLN--------LILCCALD-FGSTNYSKLVFSQVKEPNIFLW 82

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N ++RGL       +A+  Y  M  G    +  T  F LKACAR L +   L+IHS +++
Sbjct: 83  NTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVK 142

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G+  D  + T+LL +Y K      A KVFD++  +++ SW A+I G        EA+  
Sbjct: 143 AGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGA 202

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           FK++ +E   KP+  +++  LAAC  LG    G+ I  YI +  +  NV V  +++DMY 
Sbjct: 203 FKKL-LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYV 261

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG L++A  +F  +   K +V+W+TM+  +A +G   +AL+LF QM    +KPD  + +
Sbjct: 262 KCGNLERANLIFSAMP-EKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMV 320

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
             L AC   G +D G+   + M       N     +++D+  + G + +A +I  ++   
Sbjct: 321 GVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKR- 379

Query: 377 TDMVLWQTLLGACQLYG 393
            D V+W  ++    + G
Sbjct: 380 KDRVVWNAMMVGLSMNG 396



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 125/247 (50%), Gaps = 2/247 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A+ +F  +       ++ +++G A +  P  A+  + QM   + + D  T    L A
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA + AL   +   S + R+ FL++ +LGT L+D+Y+K G +  A ++F  M  +D   W
Sbjct: 326 CATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVW 385

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI- 236
           NA++ GL+    A     LF  ++  G+ +P+E T +G L  C H G   EG +    + 
Sbjct: 386 NAMMVGLSMNGHAKAVFSLFSLVEKHGI-RPDENTFIGLLCGCTHGGFVNEGRQFFNNMK 444

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           R   L  ++     ++D+  + GLL++A ++ +N+  + + V W  ++    +H D   A
Sbjct: 445 RVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504

Query: 297 LELFEQM 303
            ++ +++
Sbjct: 505 EQVLKKL 511


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/532 (39%), Positives = 316/532 (59%), Gaps = 5/532 (0%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           L  L  AH +F  +       +N+++       K   AV  +  M+      D LT    
Sbjct: 216 LGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSL 275

Query: 115 LKACARVLALFETLQIHSHVLRHGF-LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
             A A+         +H +V R G+ + D + G  ++D+YAK+ +I +A+KVFD +  RD
Sbjct: 276 ASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRD 335

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           + SWN LI G  Q  LA+EA+ ++  M      KP + T +  L A  +LG  ++G ++H
Sbjct: 336 VVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMH 395

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
               +  L+++V V   +ID+YAKCG L +A  +F+++  R+S   WN ++    VHG G
Sbjct: 396 ALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMP-RRSTGPWNAIIAGLGVHGHG 454

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGS 352
            +AL LF QM +  +KPD V++++ L AC+HAGLVD G   F+ M    G+ P  KHY  
Sbjct: 455 AKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTC 514

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           +VD+LGRAG+L EA + ++S+ +  D  +W  LLGAC+++G+VEM ++AS+ L E+   N
Sbjct: 515 MVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPEN 574

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF--TSDKSHV 470
            G +VL+SN+YA   +WD V  VR  ++ ++++K PG+S +EV G +  F+  T  + H 
Sbjct: 575 VGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHP 634

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           +  EI   L +++ K+K  GY    S VL D+ E+EKE  L  HSE+LA+AFG+I+T   
Sbjct: 635 QHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPG 694

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           T + ++KNLR+C DCH   K ISK+  REIIVRD  RFH FKDG CSC D+W
Sbjct: 695 TPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 175/349 (50%), Gaps = 15/349 (4%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           QL A     G     +F   S +   +A      +A A+ +F ++       +NA+L GL
Sbjct: 87  QLHACALRLGLLHPNVFASGSLV---HAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGL 143

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA----RVLALFETLQIHSHVLRHGF 139
             +++  +AV    +M+      DA+T S  L  C     R LAL     +H + ++HG 
Sbjct: 144 CRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALV----MHVYAVKHGL 199

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
             +  +   L+DVY K+G +  A  VF  M +RD+ +WN++I+   QG   + AV+LF  
Sbjct: 200 SGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHG 259

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM-NVVVCNAVIDMYAKC 258
           M   GV  P+ +T++   +A    G       +H Y+R    D+ +++  NA++DMYAK 
Sbjct: 260 MMESGVC-PDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKM 318

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLA 317
             +D A +VFDN+  R  +V+WNT++  +  +G    A+ ++  M    G+KP   ++++
Sbjct: 319 SKIDAAQKVFDNLPDR-DVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVS 377

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            L A ++ G +  G+R+       G+  ++     ++DL  + G+L EA
Sbjct: 378 VLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEA 426


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/443 (44%), Positives = 295/443 (66%), Gaps = 4/443 (0%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMG-VRDIASWNALIAGLAQGNLASEAVDLFKRM 200
           D +    ++D Y K  ++V+A+++F  MG  R+  +WN +I+   Q      A+ +F++M
Sbjct: 137 DVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQM 196

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           + E V KP EVT++  L+AC HLGA   G+ IH YIR +RL ++VV+ NA+IDMY KCG 
Sbjct: 197 QSENV-KPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGA 255

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L+ A +VF  +  RK++  WN++++   ++G G  A+  F  M + G+KPD V+++  L 
Sbjct: 256 LEAAIDVFHGLS-RKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILS 314

Query: 321 ACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            C+H+GL+  G R F+ M    G++P ++HYG +VDLLGRAG L+EA ++++++ M  + 
Sbjct: 315 GCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNS 374

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           ++  +LL ACQ++ D ++ E  +++L+E+   + G++V LSNLYA+  RWDDV   RK M
Sbjct: 375 MVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLM 434

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
             R V K PG S IEV  ++H+F   D SH ++ +I   LDEI  ++K  G+   T+ VL
Sbjct: 435 IKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVL 494

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           HDI EEEKE A+ YHSE++AVAFGL+ST    +I+V KNLR C DCH  +KLIS  + RE
Sbjct: 495 HDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKRE 554

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           IIVRDR RFH F++G+CSC DYW
Sbjct: 555 IIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 147/306 (48%), Gaps = 22/306 (7%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           MLR        + S  L++CA           H  +++ GF  D +L T LLD YAKVG+
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           +  AK+VF  M  RD+ + NA+I+ L++     EA +LF  M        N      ++ 
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWN------SMI 114

Query: 219 ACGHLGAWKEGDKIHEYIREERL--DMN----VVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
            C      K GD     I   RL  D N    VV  NA+ID Y K   L  A E+F  + 
Sbjct: 115 TC----YCKLGD-----INSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMG 165

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             ++ VTWNTM+ A+   G+   A+ +F+QM    VKP +V+ ++ L AC H G +D G 
Sbjct: 166 SARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGE 225

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            +   +    +K ++    +++D+  + G L+ A D+   +S   ++  W +++    + 
Sbjct: 226 WIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSR-KNIFCWNSIIVGLGMN 284

Query: 393 GDVEMA 398
           G  E A
Sbjct: 285 GRGEEA 290



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 123/260 (47%), Gaps = 5/260 (1%)

Query: 46  IIEFYALSPLNELAYAHALFRQI-NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH 104
           II+ Y  S   +L  A  LF  + +A ++  +N ++       +   A+  ++QM   + 
Sbjct: 144 IIDGYCKS--KQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENV 201

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           +   +T    L ACA + AL     IH ++       D +LG  L+D+Y K G + +A  
Sbjct: 202 KPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAID 261

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VF  +  ++I  WN++I GL       EA+  F  M+ EG+ KP+ VT +G L+ C H G
Sbjct: 262 VFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGI-KPDGVTFVGILSGCSHSG 320

Query: 225 AWKEGDK-IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
               G +   E +    L+  V     ++D+  + G L +A E+   +  + + +   ++
Sbjct: 321 LLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSL 380

Query: 284 VMAFAVHGDGPRALELFEQM 303
           + A  +H D     ++ +Q+
Sbjct: 381 LRACQIHKDTKLGEQVTQQL 400


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/395 (48%), Positives = 276/395 (69%), Gaps = 3/395 (0%)

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
           L    + LF  M+ + + K NEVT++  ++AC  LGA  +G   H Y+ +  L +N  V 
Sbjct: 130 LIKSVLTLFIEMQ-KSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVG 188

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
            A+IDMY+KCG LD A ++FD +  R +L  +N M+  FA+HG G +AL+LF++M   G+
Sbjct: 189 TALIDMYSKCGCLDLACQLFDQLPHRDTLC-YNAMIGGFAIHGYGHQALDLFKKMTLEGL 247

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEAC 367
            PDDV+ +  +C+C+H GLV++G  +F SM    GV+P ++HYG +VDLLGRAGRL+EA 
Sbjct: 248 APDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAE 307

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
           + V ++ M  + V+W++LLGA +++G++E+ E+  + L+++     G++VLLSN+YA+  
Sbjct: 308 ERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASIN 367

Query: 428 RWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487
           RWDDV RVRK MK+  + KVPG S +EVGG +H+F   DK+H + +EIY KL+E+  ++ 
Sbjct: 368 RWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLH 427

Query: 488 EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHD 547
           EYG+   T  VL DI EEEKE+AL YHSE+LA+AF LI++     I++ KNLR+C DCH 
Sbjct: 428 EYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHT 487

Query: 548 VIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             KLISK+Y REIIVRDR RFH FK+GACSC DYW
Sbjct: 488 SSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 158/326 (48%), Gaps = 46/326 (14%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQF-----QSKLFPVRSKIIEFYALSPLNELA-- 59
           LL+KC +        +KQ+ AH+ TTG        S++  + S I+  +ALS  N +   
Sbjct: 15  LLEKCKTLDT-----LKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFNHIPNP 69

Query: 60  ----YAHALFRQIN-APSTN-DFNAVLRGLAHSS-KPTNAVL-----------WYR---- 97
               Y   +    N  P T+  F+   R L H++ KP                W R    
Sbjct: 70  TIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHDIF 129

Query: 98  ----------QMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGT 147
                     +M +   +++ +T    + ACA + AL +    H +VL+H    +  +GT
Sbjct: 130 LIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGT 189

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
            L+D+Y+K G +  A ++FD++  RD   +NA+I G A      +A+DLFK+M +EG+  
Sbjct: 190 ALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGL-A 248

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFE 266
           P++VT++  + +C H+G  +EG  + E ++E   ++  +     ++D+  + G L +A E
Sbjct: 249 PDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEE 308

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGD 292
              N+  + + V W +++ A  VHG+
Sbjct: 309 RVLNMPMKPNAVIWRSLLGAARVHGN 334


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/500 (41%), Positives = 313/500 (62%), Gaps = 5/500 (1%)

Query: 86  SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           SS PT     Y++M +   R+D ++ SF ++   R+ +L    Q+H+ +L  G  +D+LL
Sbjct: 2   SSSPTEGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLL 61

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
            T L+D+Y+   +   A KVFDEM  RD  +WN LI+   +     + + +F  M + G 
Sbjct: 62  LTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGM-LSGE 120

Query: 206 F--KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
              +P++VT L  L AC +LGA + G+K+H +I E   D    +CN++I MY++ G LDK
Sbjct: 121 LGCEPDDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDK 180

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           AF VF  +   K++VTW+ ++   A++G G  A+  FE+M + GV PDD+++   L AC+
Sbjct: 181 AFGVFKGMH-NKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACS 239

Query: 324 HAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           + GLVD G+ +F  M+   G+ PN+ HYG +VDLLGRAG+L +A  ++ S+ +  D  +W
Sbjct: 240 NCGLVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTIW 299

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
           +TLLGAC+++ +V + E     L+E+ +   GD+VLL NLY++ + W  V  +RK MK +
Sbjct: 300 RTLLGACRIHRNVILGEHVVEHLIELKAQEAGDYVLLFNLYSSVDNWKKVTELRKFMKEK 359

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            ++  P  S IE+ G +H+F   D SH +  EIYE LDEI  ++K  GY A  +  L ++
Sbjct: 360 GIQTTPASSSIELKGKVHEFVVDDVSHPQKDEIYEMLDEISKQLKIAGYVAEITSELPNL 419

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
             EEK   L YHSEKLA+AFG+++T   T+I++ KNLRIC DCH+  K++S VYNR++I+
Sbjct: 420 DAEEKRYVLSYHSEKLAIAFGVLATPPGTTIRIAKNLRICVDCHNFAKILSGVYNRQVII 479

Query: 563 RDRVRFHRFKDGACSCKDYW 582
            D  RFH F+ G CSC DYW
Sbjct: 480 TDHTRFHHFRGGHCSCNDYW 499


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/554 (37%), Positives = 334/554 (60%), Gaps = 14/554 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
            +S+LF V +K+I+ YA      L     +F ++       +N++++    + +P  A+ 
Sbjct: 278 LESELF-VSNKLIDLYA--EFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIS 334

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQ----IHSHVLRHG-FLADALLGTTL 149
            +++M     + D LT    L + A +L+    ++    +    LR G FL D  +G  +
Sbjct: 335 LFQEMRLSRIQPDCLT----LISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAV 390

Query: 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN 209
           + +YAK+G + SA+ VF+ +   D+ SWN +I+G AQ   ASEA++++  M+ EG    N
Sbjct: 391 VVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAAN 450

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
           + T +  L AC   GA ++G K+H  + +  L ++V V  ++ DMY KCG L+ A  +F 
Sbjct: 451 QGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFY 510

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
            I  R + V WNT++     HG G +A+ LF++M   GVKPD ++++  L AC+H+GLVD
Sbjct: 511 QIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 569

Query: 330 DGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +G   F  M  + G+ P++KHYG +VD+ GRAG+L+ A   +KS+S+  D  +W  LL A
Sbjct: 570 EGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSA 629

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448
           C+++G+V++ +IAS  L E+   + G  VLLSN+YA+  +W+ V  +R     + ++K P
Sbjct: 630 CRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTP 689

Query: 449 GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKE 508
           G+S +EV   +  F+T +++H  + E+Y +L  +  K+K  GY      VL D+ ++EKE
Sbjct: 690 GWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKE 749

Query: 509 NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
           + L  HSE+LA+AF LI+T   T+I++FKNLR+C DCH V K ISK+  REIIVRD  RF
Sbjct: 750 HILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRF 809

Query: 569 HRFKDGACSCKDYW 582
           H FK+G CSC DYW
Sbjct: 810 HHFKNGVCSCGDYW 823



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 184/370 (49%), Gaps = 11/370 (2%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  Y  S    +  A  LF ++       +NA++ G   S     A+     +  
Sbjct: 187 VAASLIHLY--SRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL----TLSN 240

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
           G    D++T    L AC         + IHS+ ++HG  ++  +   L+D+YA+ G +  
Sbjct: 241 GLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRD 300

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
            +KVFD M VRD+ SWN++I           A+ LF+ M++  + +P+ +T++   +   
Sbjct: 301 CQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRI-QPDCLTLISLASILS 359

Query: 222 HLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
            LG  +    +  + +R+     ++ + NAV+ MYAK GL+D A  VF+ +     +++W
Sbjct: 360 QLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NTDVISW 418

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           NT++  +A +G    A+E++  M   G +  +  ++++ L AC+ AG +  G++L   + 
Sbjct: 419 NTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLL 478

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             G+  ++    S+ D+ G+ GRL++A  +   +    + V W TL+     +G  E A 
Sbjct: 479 KNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPR-VNSVPWNTLIACHGFHGHGEKAV 537

Query: 400 IASRKLVEMG 409
           +  +++++ G
Sbjct: 538 MLFKEMLDEG 547



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 163/332 (49%), Gaps = 30/332 (9%)

Query: 2   ANLNALLQKCSSNG----AVSHIHI-----------KQLQAHLTTTGQFQSKLFPVRSKI 46
           A+ NAL Q C  NG     +  +H            K L A L  + Q Q+    + +K+
Sbjct: 36  ASANAL-QDCWKNGNESKEIDDVHTLFRYCTNLQSAKCLHARLVVSKQIQN--VCISAKL 92

Query: 47  IEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQ-MLRGSHR 105
           +  Y    L  +A A   F  I       +N ++ G   +   +  +  +   ML     
Sbjct: 93  VNLYCY--LGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLT 150

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            D  T    LKAC  V+   +  +IH   L+ GF+ D  +  +L+ +Y++   + +A+ +
Sbjct: 151 PDYRTFPSVLKACRTVI---DGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARIL 207

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FDEM VRD+ SWNA+I+G  Q   A EA+ L       G+   + VTV+  L+AC   G 
Sbjct: 208 FDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGD 262

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
           +  G  IH Y  +  L+  + V N +ID+YA+ G L    +VFD +  R  L++WN+++ 
Sbjct: 263 FNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR-DLISWNSIIK 321

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           A+ ++    RA+ LF++M  + ++PD ++ ++
Sbjct: 322 AYELNEQPLRAISLFQEMRLSRIQPDCLTLIS 353


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/508 (39%), Positives = 311/508 (61%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G   S      +  +  M +   RSD  T +   K C  + A+ +  Q+H++ +
Sbjct: 485 WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAI 544

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + G+  D  + + +LD+Y K G++ +A+  FD + V D  +W  +I+G  +      A  
Sbjct: 545 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFH 604

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +F +M++ GV  P+E T+     A   L A ++G +IH    +     +  V  +++DMY
Sbjct: 605 VFSQMRLMGVL-PDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMY 663

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG +D A+ +F  I+   ++  WN M++  A HG+G   L+LF+QM   G+KPD V++
Sbjct: 664 AKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTF 722

Query: 316 LAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +  L AC+H+GLV +  +   SM  + G+KP ++HY  + D LGRAG +++A ++++S+S
Sbjct: 723 IGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMS 782

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           M     +++TLL AC++ GD E  +  + KL+E+   +   +VLLSN+YAA  +WD++  
Sbjct: 783 MEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKL 842

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
            R  MK   VKK PGFS+IEV   IH F   D+S+ +   IY K+ +++  IK+ GY   
Sbjct: 843 ARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPE 902

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T   L D+ EEEKE AL YHSEKLAVAFGL+ST  +T I+V KNLR+C DCH+ +K I+K
Sbjct: 903 TDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAK 962

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           VYNREI++RD  RFHRFKDG CSC DYW
Sbjct: 963 VYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 180/361 (49%), Gaps = 15/361 (4%)

Query: 39  LFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQ 98
           +  V + +I  Y    L +  +A  +F  ++      +N+V+ G+A +     AV  + Q
Sbjct: 349 MLTVSNSLINMYC--KLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQ 406

Query: 99  MLRGSHRSDALTCSFALKACARVL-ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157
           +LR   + D  T +  LKA + +   L  + Q+H H ++   ++D+ + T L+D Y++  
Sbjct: 407 LLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNR 466

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
            +  A+ +F+     D+ +WNA++AG  Q +   + + LF  M  +G  + ++ T+    
Sbjct: 467 CMKEAEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGE-RSDDFTLATVF 524

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
             CG L A  +G ++H Y  +   D+++ V + ++DMY KCG +  A   FD+I      
Sbjct: 525 KTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD- 583

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD--VSYLAALCACNHAGLVDDGVRLF 335
           V W TM+     +G+  RA  +F QM   GV PD+  ++ LA   +C  A  ++ G ++ 
Sbjct: 584 VAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA--LEQGRQIH 641

Query: 336 -NSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            N++  NC   P +    S+VD+  + G + +A  + K + M  ++  W  +L     +G
Sbjct: 642 ANALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGLAQHG 698

Query: 394 D 394
           +
Sbjct: 699 E 699



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 11/326 (3%)

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N  L    HS + +  +  +  M+      D +T    L    +V +L    Q+H   L+
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G      +  +L+++Y K+ +   A+ VFD M  RD+ SWN++IAG+AQ  L  EAV L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV----VCNAVI 252
           F ++   G+ KP++ T+   L A   L    EG  + + +    + +N V    V  A+I
Sbjct: 404 FMQLLRCGL-KPDQYTMTSVLKAASSL---PEGLSLSKQVHVHAIKINNVSDSFVSTALI 459

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
           D Y++   + +A  +F+  +    LV WN M+  +    DG + L+LF  M + G + DD
Sbjct: 460 DAYSRNRCMKEAEILFE--RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDD 517

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
            +       C     ++ G ++       G   ++     ++D+  + G +  A     S
Sbjct: 518 FTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDS 577

Query: 373 VSMGTDMVLWQTLLGACQLYGDVEMA 398
           + +  D V W T++  C   G+ E A
Sbjct: 578 IPVPDD-VAWTTMISGCIENGEEERA 602



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 135/274 (49%), Gaps = 12/274 (4%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ A+   +G +   L+ V S I++ Y      +++ A   F  I  P    +  ++ G
Sbjct: 537 KQVHAYAIKSG-YDLDLW-VSSGILDMYV--KCGDMSAAQFAFDSIPVPDDVAWTTMISG 592

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              + +   A   + QM       D  T +   KA + + AL +  QIH++ L+     D
Sbjct: 593 CIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTND 652

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +GT+L+D+YAK G I  A  +F  + + +I +WNA++ GLAQ     E + LFK+MK 
Sbjct: 653 PFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKS 712

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV----CNAVIDMYAKC 258
            G+ KP++VT +G L+AC H G   E    ++++R    D  +       + + D   + 
Sbjct: 713 LGI-KPDKVTFIGVLSACSHSGLVSEA---YKHMRSMHGDYGIKPEIEHYSCLADALGRA 768

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           GL+ +A  + +++    S   + T++ A  V GD
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGD 802



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 97/189 (51%), Gaps = 7/189 (3%)

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H+ +L      +  L   L+ +Y+K G +  A++VFD+M  RD+ SWN+++A  AQ +  
Sbjct: 62  HARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSEC 121

Query: 191 -----SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
                 +A  LF+ ++ + V+  + +T+   L  C H G     +  H Y  +  LD + 
Sbjct: 122 VVENIQQAFLLFRILRQDVVY-TSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDE 180

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V  A++++Y K G + +   +F+ +  R  +V WN M+ A+   G    A++L      
Sbjct: 181 FVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLKAYLEMGFKEEAIDLSSAFHS 239

Query: 306 AGVKPDDVS 314
           +G+ P++++
Sbjct: 240 SGLNPNEIT 248



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 148/373 (39%), Gaps = 54/373 (14%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSK-----PTNAVLWYRQ 98
           + +I  Y  S    L YA  +F ++       +N++L   A SS+        A L +R 
Sbjct: 78  NNLISMY--SKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRI 135

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           + +    +  +T S  LK C     ++ +   H +  + G   D  +   L+++Y K G+
Sbjct: 136 LRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGK 195

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT------ 212
           +   K +F+EM  RD+  WN ++    +     EA+DL       G+  PNE+T      
Sbjct: 196 VKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGL-NPNEITLRLLAR 254

Query: 213 VLGALAACGHLGAWKEGDK-------------IHEYIREERL--------DM--NVVVCN 249
           + G  +  G + ++  G+              + EY+   +         DM  + V C+
Sbjct: 255 ISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECD 314

Query: 250 AV--IDMYAKCGLLDKAFEVFDNIKCRK-------SLVTWNTMVMAFAVHGDGPRALELF 300
            V  I M A    +D +  +   + C          L   N+++  +        A  +F
Sbjct: 315 QVTFILMLATAVKVD-SLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
           + M     + D +S+ + +      GL  + V LF  +  CG+KP+     SV   L  A
Sbjct: 374 DNMS----ERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSV---LKAA 426

Query: 361 GRLQEACDIVKSV 373
             L E   + K V
Sbjct: 427 SSLPEGLSLSKQV 439


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/610 (36%), Positives = 343/610 (56%), Gaps = 45/610 (7%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKL--FPVRSKIIEFYALSPLNELAYAHALF 65
           LQ+CS    +  IH + L+  L       +K   F + S   +F        L YA  +F
Sbjct: 21  LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDF--------LPYAQIVF 72

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
              + P T  +N ++RG + S +P  ++L Y++ML  S   +A T    LKAC+ + A  
Sbjct: 73  DGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFE 132

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---------------- 169
           ET QIH+ + + G+  D     +L++ YA  G    A  +FD +                
Sbjct: 133 ETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYV 192

Query: 170 --GVRDIA-------------SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
             G  DIA             SW  +I+G  Q ++  EA+ LF  M+   V +P+ V++ 
Sbjct: 193 KAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV-EPDNVSLA 251

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
            AL+AC  LGA ++G  IH Y+ + R+ M+ V+   +IDMYAKCG +++A EVF NIK +
Sbjct: 252 NALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK-K 310

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           KS+  W  ++  +A HG G  A+  F +M + G+KP+ +++ A L AC++ GLV++G  +
Sbjct: 311 KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLI 370

Query: 335 FNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           F SM  +  +KP ++HYG +VDLLGRAG L EA   ++ + +  + V+W  LL AC+++ 
Sbjct: 371 FYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHK 430

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           ++E+ E     L+ +   + G +V  +N++A  ++WD     R+ MK + V KVPG S I
Sbjct: 431 NIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTI 490

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD-IGEEEKENALC 512
            + G  H+F   D+SH +  +I  K   +  K++E GY      +L D + ++E+E  + 
Sbjct: 491 SLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVH 550

Query: 513 YHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
            HSEKLA+ +GLI T   T I++ KNLR+C+DCH V KLISK+Y R+I++RDR RFH F+
Sbjct: 551 QHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFR 610

Query: 573 DGACSCKDYW 582
           DG CSC DYW
Sbjct: 611 DGKCSCGDYW 620


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/559 (37%), Positives = 327/559 (58%), Gaps = 34/559 (6%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  +F  I       +N+++ G      P  A+  +++M     ++  +T    L 
Sbjct: 181 DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLS 240

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD--------- 167
           ACA++  L    Q+ S++  +    +  L   +LD+Y K G I  AK++FD         
Sbjct: 241 ACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 300

Query: 168 ----------------------EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
                                  M  +DI +WNALI+   Q    +EA+ +F  ++++  
Sbjct: 301 WTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKN 360

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
            K N++T++  L+AC  +GA + G  IH YI++  + MN  V +A+I MY+KCG L+K+ 
Sbjct: 361 MKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSR 420

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
           EVF++++ R   V W+ M+   A+HG G  A+++F +M  A VKP+ V++    CAC+H 
Sbjct: 421 EVFNSVEKRDVFV-WSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 479

Query: 326 GLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
           GLVD+   LF+ M +N G+ P  KHY  +VD+LGR+G L++A   ++++ +     +W  
Sbjct: 480 GLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGA 539

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444
           LLGAC+++ ++ +AE+A  +L+E+   N G  VLLSN+YA   +W++V  +RK M+   +
Sbjct: 540 LLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGL 599

Query: 445 KKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
           KK PG S IE+ G+IH+F + D +H    ++Y KL E+M K+K  GY    S VL  I E
Sbjct: 600 KKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEE 659

Query: 505 EE-KENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
           EE KE +L  HSEKLA+ +GLIST     I+V KNLR+C DCH V KLIS++Y+REIIVR
Sbjct: 660 EEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVR 719

Query: 564 DRVRFHRFKDGACSCKDYW 582
           DR RFH F++G CSC D+W
Sbjct: 720 DRYRFHHFRNGQCSCNDFW 738



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 205/420 (48%), Gaps = 41/420 (9%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L+++C     VS   +KQ   H+  TG F        SK+    ALS    L YA  +F
Sbjct: 35  SLIERC-----VSLRQLKQTHGHMIRTGTFSDPY--SASKLFAMAALSSFASLEYARKVF 87

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLAL 124
            +I  P++  +N ++R  A    P  ++  +  M+  S    +  T  F +KA A V +L
Sbjct: 88  DEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
                +H   ++    +D  +  +L+  Y   G++ SA KVF  +  +D+ SWN++I G 
Sbjct: 148 SLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGF 207

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
            Q     +A++LFK+M+ E V K + VT++G L+AC  +   + G ++  YI E R+++N
Sbjct: 208 VQKGSPDKALELFKKMESEDV-KASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVN 266

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFD------------------------------NIKCR 274
           + + NA++DMY KCG ++ A  +FD                              N   +
Sbjct: 267 LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGVR 333
           K +V WN ++ A+  +G    AL +F ++  +  +K + ++ ++ L AC   G ++ G  
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386

Query: 334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + + +   G++ N     +++ +  + G L+++ ++  SV    D+ +W  ++G   ++G
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG 445



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 148/311 (47%), Gaps = 10/311 (3%)

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA--KVGEIVSAKKVFDEMGVRDIASW 177
           R ++L +  Q H H++R G  +D    + L  + A      +  A+KVFDE+   +  +W
Sbjct: 39  RCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAW 98

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N LI   A G     ++  F  M  E    PN+ T    + A   + +   G  +H    
Sbjct: 99  NTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAV 158

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  +  +V V N++I  Y  CG LD A +VF  IK  K +V+WN+M+  F   G   +AL
Sbjct: 159 KSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK-EKDVVSWNSMINGFVQKGSPDKAL 217

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           ELF++M    VK   V+ +  L AC     ++ G ++ + +    V  N+    +++D+ 
Sbjct: 218 ELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMY 277

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
            + G +++A  +  ++    D V W T+L    +  D E    A+R++  + S    D V
Sbjct: 278 TKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYE----AAREV--LNSMPQKDIV 330

Query: 418 LLSNLYAAYER 428
             + L +AYE+
Sbjct: 331 AWNALISAYEQ 341


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/551 (40%), Positives = 323/551 (58%), Gaps = 23/551 (4%)

Query: 40  FPVRSKI-----IEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
            PVR KI     I  YA + L  L+ A  LF ++       + A++ G   +     A  
Sbjct: 241 MPVRDKISWNIMITGYAQNGL--LSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATR 298

Query: 95  WYRQMLRGSHRS-DALTCSFAL-KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV 152
            + +M   +  S +A+   +   +   +   LF+ +             +     T++  
Sbjct: 299 IFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR----------NTSSWNTMVTG 348

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           YA+ G I  AK +FDEM  RD  SW A+I+G AQ   + EA+ LF +MK +G    N   
Sbjct: 349 YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGI-LNRSA 407

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           +  AL++C  + A + G ++H  + +       +  NA++ MY KCG +++AF+VF++I 
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDI- 466

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K +V+WNTM+  +A HG G  AL LFE M +  +KPDDV+ +  L AC+H G VD G+
Sbjct: 467 TEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGM 525

Query: 333 RLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             FNSM  N G+  N KHY  ++DLLGRAGRL EA +++KS+    D   W  LLGA ++
Sbjct: 526 EYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRI 585

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           +GD E+ E A+ K+ EM  +N G +VLLSNLYAA  RW +V  +R  M+++ VKKVPG+S
Sbjct: 586 HGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYS 645

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
           ++E+    H F   D SH +   IY  L+E+  ++K+ G+ + T  VLHD+ EEEKE+ L
Sbjct: 646 WVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHML 705

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
            YHSEKLAVAFG++S      I+V KNLR+C DCH+ IK ISK+  R+IIVRD  RFH F
Sbjct: 706 KYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHF 765

Query: 572 KDGACSCKDYW 582
            +G+CSC DYW
Sbjct: 766 SEGSCSCGDYW 776



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 137/285 (48%), Gaps = 26/285 (9%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +    +L  Y K G + +A+ +F++M  +D+ SWNA+++G AQ     EA  +F +M 
Sbjct: 121 DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML 180

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           ++     NE++  G L+A    G  ++  ++     + ++D  +V  N ++  Y +   L
Sbjct: 181 VK-----NEISWNGLLSAYVQNGRIEDARRLF----DSKMDWEIVSWNCLMGGYVRKKRL 231

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP--DDVSYLAAL 319
           D A  +FD +  R   ++WN M+  +A +G    A  LFE++      P  D  ++ A +
Sbjct: 232 DDARSLFDRMPVRDK-ISWNIMITGYAQNGLLSEARRLFEEL------PIRDVFAWTAMV 284

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
                 G++D+  R+F  M     + N   + +++    ++ ++++A ++   +    + 
Sbjct: 285 SGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMP-SRNT 339

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
             W T++      G+++ A+I      EM   +C  +  + + YA
Sbjct: 340 SSWNTMVTGYAQCGNIDQAKIL---FDEMPQRDCISWAAMISGYA 381


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/569 (39%), Positives = 343/569 (60%), Gaps = 15/569 (2%)

Query: 21  HIKQLQ---AHLTTTGQFQSKLFPVRSKIIEFYALS-PLNELAYAHALFRQINAPSTNDF 76
           H+++LQ   AHL  TG  +S     R+ + +   LS     +AY   LFR ++ P +  F
Sbjct: 22  HLRRLQQAHAHLVVTGCHRS-----RALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLF 76

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N++++  ++     +AV +YR+ML         T +  +KACA +  L     +HSHV  
Sbjct: 77  NSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFV 136

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G+ +++ +   L+  YAK      A+KVFDEM  R I +WN++I+G  Q  LASEAV++
Sbjct: 137 SGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEV 196

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           F +M+  G  +P+  T +  L+AC  LG+   G  +HE I    + MNVV+  ++++M++
Sbjct: 197 FNKMRESG-GEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFS 255

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           +CG + +A  VFD++    ++V+W  M+  + +HG G  A+E+F +M   GV P+ V+Y+
Sbjct: 256 RCGDVGRARAVFDSMN-EGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYV 314

Query: 317 AALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           A L AC HAGL+++G  +F SM    GV P ++H+  +VD+ GR G L EA   V+ +S 
Sbjct: 315 AVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLS- 373

Query: 376 GTDMV--LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
             ++V  +W  +LGAC+++ + ++    +  L+     N G +VLLSN+YA   R D V 
Sbjct: 374 SEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVE 433

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA 493
            VR  M  R +KK  G+S I+V    + F   DKSH +  EIY  LDE+M++ K+ GYA 
Sbjct: 434 SVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAP 493

Query: 494 GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
                +H++ EEE+E AL YHSEKLAVAFGL+ T    ++++ KNLRIC DCH  IK IS
Sbjct: 494 APESAMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFIS 553

Query: 554 KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            V NREIIVRD++RFH F++G+CSC DYW
Sbjct: 554 VVMNREIIVRDKLRFHHFREGSCSCSDYW 582


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/557 (37%), Positives = 324/557 (58%), Gaps = 36/557 (6%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFALKACA 119
           A A F  ++      +N+++ G         A+ ++  +L+  S + D  + + AL ACA
Sbjct: 192 ALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACA 251

Query: 120 RVLALFETLQIHSHVLRHGFLADALLG--------------------------------- 146
            +  L    QIH +++R  F A   +G                                 
Sbjct: 252 NLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAF 311

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           T LL+ Y K+G+I  A+++F+ +   D+ +W A+I G  Q  L ++A+++FK M  EG  
Sbjct: 312 TALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGP- 370

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           +PN  T+   L+A   + +   G +IH         ++  V NA+  MYAK G ++ A +
Sbjct: 371 RPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARK 430

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ ++  +  V+W +M+MA A HG G  A+ELFEQM   G+KPD ++Y+  L AC H G
Sbjct: 431 VFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGG 490

Query: 327 LVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LV+ G   F+ M N   + P + HY  +VDL GRAG LQEA   V+++ M  D++ W +L
Sbjct: 491 LVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSL 550

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           L +C++Y +V++A++A+ +L+ +  NN G +  L+N+Y++  +WDD  ++RK MK R VK
Sbjct: 551 LSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVK 610

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K  G S++++    H F   D  H +  EIY+ +D+I  +IK+ G+A  T  VLHD+  E
Sbjct: 611 KEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVE 670

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
            K+  L YHSEKLA+AFG+IST E T++++ KNLR+C DCH+ IK ISK+ +REIIVRD 
Sbjct: 671 VKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDA 730

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH FKDG+CSCKDYW
Sbjct: 731 TRFHHFKDGSCSCKDYW 747



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 153/306 (50%), Gaps = 10/306 (3%)

Query: 46  IIEFYAL----SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           +I F AL      L ++  A  +F  +  P    + A++ G   +    +A+  ++ M+ 
Sbjct: 308 VIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVS 367

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              R ++ T +  L A + V +L    QIH+  +R G      +G  L  +YAK G I  
Sbjct: 368 EGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSING 427

Query: 162 AKKVFDEM-GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           A+KVF+ +   RD  SW ++I  LAQ  L  EA++LF++M   G+ KP+ +T +G L+AC
Sbjct: 428 ARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGI-KPDHITYVGVLSAC 486

Query: 221 GHLGAWKEGDKIHEYIRE-ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
            H G  ++G    + ++   ++D  +     ++D++ + GLL +A++  +N+     ++ 
Sbjct: 487 THGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIA 546

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC-NHAGLVDDGVRLFNSM 338
           W +++ +  V+ +   A    E++    ++P++    +AL    +  G  DD  ++   M
Sbjct: 547 WGSLLSSCKVYKNVDLAKVAAERL--LLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLM 604

Query: 339 ANCGVK 344
              GVK
Sbjct: 605 KARGVK 610



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 174/417 (41%), Gaps = 65/417 (15%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  AH +F  I    +  +  ++ G     +  +A+  +  M++        T +  L 
Sbjct: 56  KLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLA 115

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR---- 172
           +CA   +     ++HS V++ G  A   +  +LL++YAK G++  AK VFD M +R    
Sbjct: 116 SCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSS 175

Query: 173 ---------------------------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
                                      DI SWN++IAG  Q    +EA+  F  +  +  
Sbjct: 176 WNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTS 235

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG------ 259
            KP+  ++  AL+AC +L     G +IH YI     D +  V NA+I MYAK G      
Sbjct: 236 LKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIAR 295

Query: 260 ------------------LLD---------KAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
                             LL+          A ++F+++K    +V W  M++ +  +G 
Sbjct: 296 RIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLK-DPDVVAWTAMIVGYVQNGL 354

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
              A+E+F+ M   G +P+  +  A L A +    ++ G ++  S    G   +     +
Sbjct: 355 NNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNA 414

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           +  +  +AG +  A  +   +    D V W +++ A   +G  E A     +++ +G
Sbjct: 415 LTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLG 471



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 148/310 (47%), Gaps = 29/310 (9%)

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
           T+L  YAK G++  A +VFD + VRD  SW  +I G  Q     +A+ +F  M  + V  
Sbjct: 46  TILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL- 104

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           P + T+   LA+C   G+   G K+H ++ +  L   V V N++++MYAK G L  A  V
Sbjct: 105 PTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVV 164

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           FD +K R +  +WN M+      G    AL  FE +     + D VS+ + +  CN  G 
Sbjct: 165 FDRMKLRNT-SSWNAMISLHMNCGRVDLALAQFELLS----ERDIVSWNSMIAGCNQHGF 219

Query: 328 VDDGVRLFNS-MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM--VLWQT 384
            ++ ++ F+S + +  +KP+     S +           AC  ++ +S G  +   + +T
Sbjct: 220 DNEALQFFSSILKDTSLKPDRFSLASAL----------SACANLEKLSFGKQIHGYIVRT 269

Query: 385 LLGACQLYGDVEMAEIA-------SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
           +  A    G+  ++  A       +R+++E    +  D +  + L   Y +  D+   R+
Sbjct: 270 MFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQ 329

Query: 438 ---AMKNRDV 444
              ++K+ DV
Sbjct: 330 IFNSLKDPDV 339


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/567 (39%), Positives = 347/567 (61%), Gaps = 16/567 (2%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           + Q+ AH+  +G   S+   + +K++     +    ++Y   +F  +  P +  F +++R
Sbjct: 28  LHQVHAHVIVSGYGCSRF--LLTKLLNLACAA--GSISYTRQIFLIVPNPDSFLFTSLIR 83

Query: 82  GLAHSSKPTN----AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
               +SK  N    ++ +Y +M+  +      T +  +K+CA ++AL     IH HVL +
Sbjct: 84  S---TSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVN 140

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           GF +D  + T L+  Y K G + +A+KVFD+M  R + +WN++I+G  Q   A EA+ LF
Sbjct: 141 GFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLF 200

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
            RMK  GV +PN  T +  L+AC HLGA+  G  +HEY     LD+NVV+  ++I+MY +
Sbjct: 201 DRMKEIGV-EPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTR 259

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           CG + KA EVFD++K  +++V W  M+  +  +G G +A+ELF +M R G+ P+ ++++A
Sbjct: 260 CGNVSKAREVFDSMK-ERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVA 318

Query: 318 ALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
            L AC HAGLV++G R+F SM     + P ++H+  +VD+LGRAG L EA + +K +   
Sbjct: 319 VLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEE 378

Query: 377 TDMVLWQTLLGACQLYGDVEM-AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
               +W  +LGAC+++ +  + A++A  +L      N   +V+LSN+YA   R D V  V
Sbjct: 379 PAPAIWTAMLGACKMHKNFGLGAQVAEHRLAS-EPGNPAHYVILSNIYALAGRMDQVEMV 437

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           R  M  + +KK  G+S I++    + F   DKSH +  EIY  LD++M K +E GY   +
Sbjct: 438 RDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVS 497

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
             V+H++ EEE+E AL YHSEKLA+AFGL+ TS  T I++ KNLR+C DCH  IK IS +
Sbjct: 498 DSVMHELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVI 557

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
            NREIIVRD++RFH FK+G+CSC DYW
Sbjct: 558 SNREIIVRDKLRFHHFKNGSCSCLDYW 584


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/597 (36%), Positives = 332/597 (55%), Gaps = 39/597 (6%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA-YAHALFRQINAPSTNDFNAV 79
            IKQ  A +   G        + S ++ F A+S  +  + YA +++  I+ P+    N +
Sbjct: 46  QIKQAHARILVLGLANDG--RITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNM 103

Query: 80  LRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           +R       P +++  Y  M R      +  T +F L+AC+   A+ E  Q+ +HV++ G
Sbjct: 104 IRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLG 163

Query: 139 FLADALLGTTLLDVY--------------------------------AKVGEIVSAKKVF 166
           F+ D  +   L+ +Y                                 ++G+I  A+K+F
Sbjct: 164 FVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLF 223

Query: 167 DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW 226
            EM  +D+ SW  +I+G  Q     +A+D FK +  E   +PNE  ++  LAA   LG  
Sbjct: 224 VEMPEKDVISWGTIISGCVQNGELEKALDYFKELG-EQKLRPNEAILVSLLAAAAQLGTL 282

Query: 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
           + G +IH      R  M   +  A++DMYAKCG +D++  +FD +   K   +WN M+  
Sbjct: 283 EYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMP-EKDKWSWNVMICG 341

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKP 345
            A HG G  AL LFE+    G  P +V+++  L AC+ AGLV +G   F  M +  G++P
Sbjct: 342 LATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEP 401

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
            M+HYG +VDLL RAG + +A +++  +    D VLW ++LG+CQ++G +E+ E    KL
Sbjct: 402 EMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKL 461

Query: 406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTS 465
           ++M   + G +V L+ ++A   +W+DV +VR+ M  R+  K+ G+S IE  G +H+F   
Sbjct: 462 IQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAG 521

Query: 466 DKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
           DK H +  EIY+ L+ +  +I   GY+A  S VLHDI EEEKENA+  HSE+LA+AFGL+
Sbjct: 522 DKEHERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLL 581

Query: 526 STSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            T +   I++ KNLR+C DCH+V K+IS V+ REIIVRD  RFH FK G CSC+DYW
Sbjct: 582 VTKDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/567 (38%), Positives = 337/567 (59%), Gaps = 8/567 (1%)

Query: 21  HIKQLQAHLTTTGQFQSKLFP----VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF 76
           H + L+  L   GQ     F     V   +I FY+ + L   +    LF      S   +
Sbjct: 19  HTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLK--LFDSFPHKSATTW 76

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           ++V+   A +  P  A+ ++R+MLR     D  T   A K+ A + +L   L +H+  L+
Sbjct: 77  SSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLK 136

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
                D  +G++L+D YAK G++  A+KVFDEM  +++ SW+ +I G +Q  L  EA++L
Sbjct: 137 TAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNL 196

Query: 197 FKR-MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           FKR ++ +   + N+ T+   L  C     ++ G ++H    +   D +  V +++I +Y
Sbjct: 197 FKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLY 256

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCG+++  ++VF+ +K R +L  WN M++A A H    R  ELFE+M R GVKP+ +++
Sbjct: 257 SKCGVVEGGYKVFEEVKVR-NLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITF 315

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           L  L AC+HAGLV+ G   F  M   G++P  +HY ++VDLLGRAG+L+EA  ++K + M
Sbjct: 316 LCLLYACSHAGLVEKGEHCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPM 375

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
                +W  LL  C+++G+ E+A   + K+ EMG+ + G  VLLSN YAA  RW++  R 
Sbjct: 376 QPTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARA 435

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           RK M+++ +KK  G S++E G  +H F   D+SH K REIYEKL+E+  ++ + GY A T
Sbjct: 436 RKMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADT 495

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
           S VL ++  +EK   + YHSE+LA+AFGLI+      I+V KNLR+C DCH  IK ISK 
Sbjct: 496 SFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKC 555

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
             R IIVRD  RFHRF+DG C+C DYW
Sbjct: 556 TGRVIIVRDNNRFHRFEDGKCTCGDYW 582


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 314/523 (60%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  I   +   + A++ G   S     A+  ++++L    + D+ +    L ACAR
Sbjct: 168 ALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACAR 227

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +        I  ++   G   +  + T+LLD+Y K G +  A  +F  M  +DI SW+ +
Sbjct: 228 LGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTM 287

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G A   L  +A+DLF +M+ E + KP+  T++G L+AC  LGA   G      +    
Sbjct: 288 IQGYAFNGLPQQALDLFFQMQSENL-KPDCYTMVGVLSACATLGALDLGIWASSLMDRNE 346

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              N V+  A+IDMY+KCG + +A+E+F  +K +K  V WN M++  +++G       LF
Sbjct: 347 FLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAMMVGLSMNGHAKAVFSLF 405

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGR 359
             + + G++PD+ +++  LC C H G V++G + FN+M     + P+++HYG +VDLLGR
Sbjct: 406 SLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGR 465

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L EA  ++ ++ M  + V+W  LLG C+L+ D  +AE   +KL+E+   N G++V L
Sbjct: 466 AGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQL 525

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+Y+   RW++  ++R  MK + ++K+   S+IE+ G++H+F   DKSH    +IY KL
Sbjct: 526 SNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKL 585

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           DE+  ++K  G+   T  VL DI EEEKE+ L YHSEKLAVAFGLI++     I+V KNL
Sbjct: 586 DELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNL 645

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCHD IKLISK+  REII+RD  RFH F DG+CSC+DYW
Sbjct: 646 RVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 188/377 (49%), Gaps = 12/377 (3%)

Query: 17  VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF 76
           + HIH + L+ HL       +        +I   AL       Y+  +F Q+  P+   +
Sbjct: 32  LKHIHARLLRLHLDQDNYLLN--------LILCCALD-FGSTNYSKLVFSQVKEPNIFLW 82

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N ++RGL       +A+  Y  M  G    +  T  F LKACAR L +   L+IHS +++
Sbjct: 83  NTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVK 142

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G+  D  + T+LL +Y K      A KVFD++  +++ SW A+I G        EA+  
Sbjct: 143 AGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGA 202

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           FK++ +E   KP+  +++  LAAC  LG    G+ I  YI +  +  NV V  +++DMY 
Sbjct: 203 FKKL-LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYV 261

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG L++A  +F  +   K +V+W+TM+  +A +G   +AL+LF QM    +KPD  + +
Sbjct: 262 KCGNLERANLIFSAMP-EKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMV 320

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
             L AC   G +D G+   + M       N     +++D+  + G + +A +I  ++   
Sbjct: 321 GVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK-K 379

Query: 377 TDMVLWQTLLGACQLYG 393
            D V+W  ++    + G
Sbjct: 380 KDRVVWNAMMVGLSMNG 396



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 125/247 (50%), Gaps = 2/247 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A+ +F  +       ++ +++G A +  P  A+  + QM   + + D  T    L A
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA + AL   +   S + R+ FL++ +LGT L+D+Y+K G +  A ++F  M  +D   W
Sbjct: 326 CATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVW 385

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI- 236
           NA++ GL+    A     LF  ++  G+ +P+E T +G L  C H G   EG +    + 
Sbjct: 386 NAMMVGLSMNGHAKAVFSLFSLVEKHGI-RPDENTFIGLLCGCTHGGFVNEGRQFFNNMK 444

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           R   L  ++     ++D+  + GLL++A ++ +N+  + + V W  ++    +H D   A
Sbjct: 445 RVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504

Query: 297 LELFEQM 303
            ++ +++
Sbjct: 505 EQVLKKL 511


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/537 (41%), Positives = 316/537 (58%), Gaps = 39/537 (7%)

Query: 84  AHSSKPT---NAVLWYRQMLRGS-HRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           AH+  PT   N++  +  M+R S    +  T  F  KAC   L + E  QI  H ++ G 
Sbjct: 4   AHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGL 63

Query: 140 LADALLGTTLLDVYAK-------------------------------VGEIVSAKKVFDE 168
            ++  +   ++ +YA                                 GEI  AK++FDE
Sbjct: 64  ESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDE 123

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
           M  RD+ SW  +IAG  Q     EA+DLF  M   G   PNE T+  ALAAC +L A  +
Sbjct: 124 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGP-PPNEFTLASALAACANLVALDQ 182

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF-DNIKCRKSLVTWNTMVMAF 287
           G  IH YI +  + MN  +  +++DMYAKCG +D A +VF D    +  +  WN M+  +
Sbjct: 183 GRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGY 242

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPN 346
           A+HG    A++LFEQM    V P+ V+++A L AC+H  LV++G   F SMA+  G++P 
Sbjct: 243 AMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPE 302

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
           ++HYG +VDLLGR+G L+EA + V ++ M  D  +W  LLGAC+++ D+E  +   + + 
Sbjct: 303 IEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIK 362

Query: 407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSD 466
           E+ S++ G  VLL+NLY+A  +WD+   VR+ ++    KK PG S IE+ GV H+F   D
Sbjct: 363 ELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGD 422

Query: 467 KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI-GEEEKENALCYHSEKLAVAFGLI 525
           +SH + +++Y  LDE+  K+K  GY      VL DI  EE+KE AL  HSEKLA+AFGLI
Sbjct: 423 RSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLI 482

Query: 526 STSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +T   T+I++ KNLR+C DCH+  K ISKVY REIIVRDR+R+H FKDG CSCKDYW
Sbjct: 483 NTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 4/243 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E+  A  +F +++      +  ++ G         A+  + +ML+     +  T + AL 
Sbjct: 113 EIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALA 172

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF-DEMGVR-DI 174
           ACA ++AL +   IH ++ +     +  L  +LLD+YAK GEI  A KVF DE G++  +
Sbjct: 173 ACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKV 232

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
             WNA+I G A    + EA+DLF++MK+E V  PN+VT +  L AC H    +EG    +
Sbjct: 233 WPWNAMIGGYAMHGKSKEAIDLFEQMKVEKV-SPNKVTFVALLNACSHGKLVEEGRGYFK 291

Query: 235 YIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            +     ++  +     ++D+  + GLL +A E   N+        W  ++ A  +H D 
Sbjct: 292 SMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDI 351

Query: 294 PRA 296
            R 
Sbjct: 352 ERG 354


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/552 (39%), Positives = 316/552 (57%), Gaps = 55/552 (9%)

Query: 85  HSSKPTNAVLWYRQMLRGSHRS----DALTCSFALKACARVLALFETL------------ 128
           H S P      +  ++R S RS     A   + +L    R+ A+   L            
Sbjct: 16  HLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINT 75

Query: 129 -----QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
                Q+H+ +L  G   D  + T+L+++Y+  G    A++ FDE+   D+ SWNA+I  
Sbjct: 76  PHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHA 135

Query: 184 LAQGNLASEAVDLFKRMKMEGV---------------------------------FKPNE 210
            A+  +   A  LF +M  + V                                  +PNE
Sbjct: 136 NAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNE 195

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
            T+   L+AC  LGA + G  +H YI +  + ++VV+  ++IDMYAKCG +++A  +FDN
Sbjct: 196 FTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDN 255

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
           +   K ++ W+ M+ AF++HG     LELF +M   GV+P+ V+++A LCAC H GLV +
Sbjct: 256 LGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSE 315

Query: 331 GVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           G   F  M N  GV P ++HYG +VDL  RAGR+++A ++VKS+ M  D+++W  LL   
Sbjct: 316 GNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGA 375

Query: 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPG 449
           +++GDVE  EIA  KL+E+   N   +VLLSN+YA   RW +V  +R  M+ R +KK+PG
Sbjct: 376 RIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPG 435

Query: 450 FSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKEN 509
            S +EV GVI +FF  D SH +   +Y  LDEIM +++++GY   T  VL D+ EE KE 
Sbjct: 436 CSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEF 495

Query: 510 ALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFH 569
           AL  HSEKLA+A+  + TS  T+I++ KNLRIC DCH  IK+ISK +NREIIVRD  RFH
Sbjct: 496 ALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFH 555

Query: 570 RFKDGACSCKDY 581
            FK+G CSCKDY
Sbjct: 556 HFKNGLCSCKDY 567



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 127/237 (53%), Gaps = 6/237 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYR--QMLRGSH-RSDALTCSFALKA 117
           A  LF Q+   +   ++ ++ G     +   A+  +R  Q L GS  R +  T S  L A
Sbjct: 145 ARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSA 204

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-RDIAS 176
           CAR+ AL     +H+++ + G   D +LGT+L+D+YAK G I  AK +FD +G  +D+ +
Sbjct: 205 CARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMA 264

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W+A+I   +   L+ E ++LF RM  +GV +PN VT +  L AC H G   EG++  + +
Sbjct: 265 WSAMITAFSMHGLSEECLELFARMVNDGV-RPNAVTFVAVLCACVHGGLVSEGNEYFKRM 323

Query: 237 REER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
             E  +   +     ++D+Y++ G ++ A+ V  ++     ++ W  ++    +HGD
Sbjct: 324 MNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGD 380


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/563 (37%), Positives = 337/563 (59%), Gaps = 14/563 (2%)

Query: 14  NGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPST 73
           NG + H+H+ +            S +F V + +I  Y  S    L  A  +F Q+     
Sbjct: 240 NGVLIHLHVLK--------HGLDSDVF-VSNALINMY--SKFGRLQDAQMVFDQMEVRDL 288

Query: 74  NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH 133
             +N+++     ++ P+ A+ +++ M  G  R D LT        +++     +  I   
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGF 348

Query: 134 VLRHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
           V+R  +L  D ++G  L+++YAK+G +  A  VFD++  +D  SWN L+ G  Q  LASE
Sbjct: 349 VIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASE 408

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A+D +  M+      PN+ T +  + A  H+GA ++G KIH  + +  L ++V V   +I
Sbjct: 409 AIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLI 468

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
           D+Y KCG L+ A  +F  I  R + V WN ++ +  +HG G  AL+LF+ M    VK D 
Sbjct: 469 DLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADH 527

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
           +++++ L AC+H+GLVD+G + F+ M    G+KP++KHYG +VDLLGRAG L++A ++V+
Sbjct: 528 ITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVR 587

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDD 431
           ++ +  D  +W  LL AC++YG+ E+  +AS +L+E+ S N G +VLLSN+YA  E+W+ 
Sbjct: 588 NMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEG 647

Query: 432 VGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGY 491
           V +VR   ++R ++K PG+S + VG     F+T +++H K+ EIY++L  +  K+K  GY
Sbjct: 648 VIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGY 707

Query: 492 AAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKL 551
               S V  DI E+EKE  L  HSE+LA+AFG+IST   + I++FKNLR+C DCH+  K 
Sbjct: 708 VPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKY 767

Query: 552 ISKVYNREIIVRDRVRFHRFKDG 574
           IS++  REI+VRD  RFH FKDG
Sbjct: 768 ISRISEREIVVRDSNRFHHFKDG 790



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 188/366 (51%), Gaps = 8/366 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F+  +F V + ++  Y  S    L  AH +F  +       +NA++ G   +     A+ 
Sbjct: 152 FEDDVF-VAASLVHLY--SRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALG 208

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
              +M     + D +T +  L  CA+   +   + IH HVL+HG  +D  +   L+++Y+
Sbjct: 209 VLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYS 268

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G +  A+ VFD+M VRD+ SWN++IA   Q N  S A+  FK M++ G+ +P+ +TV+
Sbjct: 269 KFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGI-RPDLLTVV 327

Query: 215 GALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
              +    L   +    I  + IR E LD +VV+ NA+++MYAK G ++ A  VFD +  
Sbjct: 328 SLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP- 386

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDDVSYLAALCACNHAGLVDDGV 332
           RK  ++WNT+V  +  +G    A++ +  M       P+  ++++ + A +H G +  G+
Sbjct: 387 RKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGM 446

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
           ++   +    +  ++     ++DL G+ GRL++A  +   +   T  V W  ++ +  ++
Sbjct: 447 KIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTS-VPWNAIIASLGIH 505

Query: 393 GDVEMA 398
           G  E A
Sbjct: 506 GRGEEA 511



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 161/314 (51%), Gaps = 18/314 (5%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           A+ NAL   C +  A      K+L A L   G+ Q+ +  + +K+I  Y      +++ +
Sbjct: 23  ADFNALFNSCVNVNAT-----KKLHALLLVFGKSQNIV--LSTKLINLYVTH--GDISLS 73

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSK---PTNAVLWYRQMLRGSH-RSDALTCSFALKA 117
            + F  I+  +   +N+++       K     N V     M  G H R D  T    LKA
Sbjct: 74  RSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKA 133

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C   ++L +  ++H  V + GF  D  +  +L+ +Y++ G +  A KVF +M V+D+ SW
Sbjct: 134 C---VSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSW 190

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NA+I+G  Q   A+ A+ +  RMK EGV K + +TV   L  C        G  IH ++ 
Sbjct: 191 NAMISGFCQNGNAAGALGVLNRMKGEGV-KMDTITVASILPVCAQSDDVINGVLIHLHVL 249

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  LD +V V NA+I+MY+K G L  A  VFD ++ R  LV+WN+++ A+  + D   AL
Sbjct: 250 KHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTAL 308

Query: 298 ELFEQMGRAGVKPD 311
             F+ M   G++PD
Sbjct: 309 RFFKGMQLGGIRPD 322


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/565 (38%), Positives = 323/565 (57%), Gaps = 31/565 (5%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL------------RGLAHSSKPTN 91
           + I+  +A  P     YA  LF +I  P+T  +N +L            RG   S    +
Sbjct: 76  NSILAAFAKKP-GHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKD 134

Query: 92  AVLWYRQM-------LRGSHRSDALTCSFALKACARVLALFE------TLQIHSHVLRHG 138
              W   +       L G  R   L  +   K C    A+         L          
Sbjct: 135 VASWNTMISALAQVGLMGEARR--LFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAA 192

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
            +   +  T ++  Y K G +  A+++F EM +R + +WNA+IAG  +   A + + LF+
Sbjct: 193 PMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFR 252

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            M   GV KPN +++   L  C +L A + G ++H+ + +  L  +     +++ MY+KC
Sbjct: 253 TMLETGV-KPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKC 311

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G L  A+E+F  I  RK +V WN M+  +A HG G +AL LF++M + G+KPD ++++A 
Sbjct: 312 GDLKDAWELFIQIP-RKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAV 370

Query: 319 LCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           L ACNHAGLVD GV+ FN+M  + G++   +HY  +VDLLGRAG+L EA D++KS+    
Sbjct: 371 LLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKP 430

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
              ++ TLLGAC+++ ++ +AE A++ L+E+       +V L+N+YAA  RWD V  +R+
Sbjct: 431 HPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRR 490

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
           +MK+ +V K+PG+S+IE+  V+H F +SD+ H +   I+EKL ++  K+K  GY      
Sbjct: 491 SMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEF 550

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           VLHD+GEE KE  L +HSEKLA+AFGL+       I+VFKNLR+C DCH   K IS +  
Sbjct: 551 VLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEG 610

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           REIIVRD  RFH FKDG CSC+DYW
Sbjct: 611 REIIVRDTTRFHHFKDGFCSCRDYW 635



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 155/370 (41%), Gaps = 79/370 (21%)

Query: 98  QMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT-LLDVYAKV 156
           ++LR   RS  LT SF        + L + +  H+H  +H F  + ++ +  L+  Y + 
Sbjct: 5   RLLRRKKRSPLLTSSF--------VTLSKYVSSHTH--QHEFNNNNVIASNKLIASYVRC 54

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV----- 211
           G+I SA +VF++M V+   +WN+++A  A+     E    + R   E + +PN V     
Sbjct: 55  GDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFE----YARQLFEKIPQPNTVSYNIM 110

Query: 212 -----------------------------TVLGALAACGHLGAWKEGDKIHEYIREERLD 242
                                        T++ ALA  G +G   E  ++   + E+   
Sbjct: 111 LACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMG---EARRLFSAMPEK--- 164

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            N V  +A++  Y  CG LD A E F     R S++TW  M+  +   G    A  LF++
Sbjct: 165 -NCVSWSAMVSGYVACGDLDAAVECFYAAPMR-SVITWTAMITGYMKFGRVELAERLFQE 222

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M    +    V++ A +      G  +DG+RLF +M   GVKPN     SV  LLG    
Sbjct: 223 MSMRTL----VTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSV--LLG---- 272

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
               C  + ++ +G  +     L+  C L  D      A   LV M S  CGD      L
Sbjct: 273 ----CSNLSALQLGKQV---HQLVCKCPLSSDT----TAGTSLVSMYS-KCGDLKDAWEL 320

Query: 423 YAAYERWDDV 432
           +    R D V
Sbjct: 321 FIQIPRKDVV 330


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/561 (37%), Positives = 337/561 (60%), Gaps = 8/561 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +Q+ AH+    +++  ++     II +     L++   A  +   +   +   + A++ G
Sbjct: 61  RQVHAHMVK-ARYRPPVYLATRLIILYVRCGALDD---ARNVLDGMPERNVVSWTAMISG 116

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            + S +   A+  + +MLR   +++  T +  L +C    ++ +  Q+HS V++  F + 
Sbjct: 117 YSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESH 176

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G++LLD+Y K G I  A+KVFD +  RD  S  A+I+G AQ  L  EA+DLF+++  
Sbjct: 177 MFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYS 236

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            G+ + N VT    L +   L +   G ++H  I  + L   +V+ N++IDMY+KCG L 
Sbjct: 237 SGM-QCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLL 295

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            +  VFDN+  ++S ++WN M+M +  HG G   ++LF  M    VKPD V+ LA L  C
Sbjct: 296 YSRRVFDNMP-QRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSGC 353

Query: 323 NHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +H GLVD+G+ +F+ +        ++ HYG V+DLLGR+G+LQ+A D+++ +       +
Sbjct: 354 SHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAI 413

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W +LLGAC+++ +V + E+ ++KL++M   N G++V+LSN+YAA   W DV RVRK M  
Sbjct: 414 WGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLE 473

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
             V K P  S+I +  VIH F +S++ H + ++I  K+ E+   +K  G+    SCVLHD
Sbjct: 474 NTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVLHD 533

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           + +E+KE  L  HSEKLA+ FGL++T    +IQV KNLRIC DCH+  K +SKVY REI 
Sbjct: 534 VDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFVSKVYGREIS 593

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           +RD+ RFH  KDGAC+C DYW
Sbjct: 594 LRDKNRFHLLKDGACTCGDYW 614



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 140/290 (48%), Gaps = 11/290 (3%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAH-LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
            L  +L  C  + ++  +     Q H L     F+S +F V S +++ Y  S    +  A
Sbjct: 144 TLATVLTSCPVHQSIQQVE----QVHSLVVKTNFESHMF-VGSSLLDMYGKS--GNIQEA 196

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             +F  +    T    A++ G A       A+  +RQ+     + + +T +  L + + +
Sbjct: 197 RKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGL 256

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
            +L    Q+H  +LR       +L  +L+D+Y+K G+++ +++VFD M  R   SWNA++
Sbjct: 257 ASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAML 316

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-REER 240
            G  +  +  E V LF+ M  E   KP+ VT+L  L+ C H G   EG  I + I +E+ 
Sbjct: 317 MGYGRHGIGQEVVQLFRTMTEE--VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQN 374

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
             +++     VID+  + G L KA ++ +++    +   W +++ A  VH
Sbjct: 375 AVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVH 424



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 134/250 (53%), Gaps = 2/250 (0%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           A+ AC    AL E  Q+H+H+++  +     L T L+ +Y + G +  A+ V D M  R+
Sbjct: 47  AITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERN 106

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           + SW A+I+G +Q    +EA++LF RM   G  K NE T+   L +C    + ++ +++H
Sbjct: 107 VVSWTAMISGYSQSGRHAEALELFIRMLRAGC-KANEFTLATVLTSCPVHQSIQQVEQVH 165

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
             + +   + ++ V ++++DMY K G + +A +VFD +  R + V+   ++  +A  G  
Sbjct: 166 SLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDT-VSCTAIISGYAQLGLD 224

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             AL+LF Q+  +G++ + V++   L + +    ++ G ++   +    +   +    S+
Sbjct: 225 DEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSL 284

Query: 354 VDLLGRAGRL 363
           +D+  + G+L
Sbjct: 285 IDMYSKCGKL 294


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/555 (38%), Positives = 336/555 (60%), Gaps = 15/555 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
            +S+LF V +K+I+ YA      L     +F ++       +N++++    + +P  A+L
Sbjct: 278 LESELF-VSNKLIDLYA--EFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIL 334

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQ----IHSHVLRHG-FLADALLGTTL 149
            +++M     + D LT    L + A +L+    ++    +    LR G FL D  +G  +
Sbjct: 335 LFQEMRLSRIQPDCLT----LISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAV 390

Query: 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG-VFKP 208
           + +YAK+G + SA+ VF+ +  +D+ SWN +I+G AQ   ASEA++++  M+ EG     
Sbjct: 391 VVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISA 450

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           N+ T +  L AC   GA ++G K+H  + +  L ++V V  ++ DMY KCG LD A  +F
Sbjct: 451 NQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLF 510

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
             I  R + V WNT++     HG G +A+ LF++M   GVKPD ++++  L AC+H+GLV
Sbjct: 511 YQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLV 569

Query: 329 DDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           D+G   F  M  + G+ P++KHYG +VDL GRAG+L+ A + +KS+ +  D  +W  LL 
Sbjct: 570 DEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLS 629

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           AC+++G+V++ +IAS  L E+   + G  VLLSN+YA+  +W+ V  +R     + ++K 
Sbjct: 630 ACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKT 689

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
           PG+S +EV   +  F+T +++H  + E+Y +L  +  K+K  GY      VL D+ ++EK
Sbjct: 690 PGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEK 749

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           E+ L  HSE+LA+AF LI+T   T+I++FKNLR+C DCH V K ISK+  REIIVRD  R
Sbjct: 750 EHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNR 809

Query: 568 FHRFKDGACSCKDYW 582
           FH FK+G CSC DYW
Sbjct: 810 FHHFKNGVCSCGDYW 824



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 177/352 (50%), Gaps = 10/352 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF ++       +NA++ G   S     A+     +  G    D++T    L AC  
Sbjct: 204 ARILFDEMPTRDMGSWNAMISGYCQSGNAKEAL----TLSDGLRAMDSVTVVSLLSACTE 259

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
                  + IHS+ ++HG  ++  +   L+D+YA+ G +   +KVFD M VRD+ SWN++
Sbjct: 260 AGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSI 319

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREE 239
           I           A+ LF+ M++  + +P+ +T++   +    LG  +    +  + +R+ 
Sbjct: 320 IKAYELNEQPLRAILLFQEMRLSRI-QPDCLTLISLASILSQLGEIRACRSVQGFTLRKG 378

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
               ++ + NAV+ MYAK GL+D A  VF+ +   K +++WNT++  +A +G    A+E+
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NKDVISWNTIISGYAQNGFASEAIEM 437

Query: 300 FEQMGRAG--VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           +  M   G  +  +  ++++ L AC+ AG +  G++L   +   G+  ++    S+ D+ 
Sbjct: 438 YNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMY 497

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           G+ GRL +A  +   +    + V W TL+     +G  E A +  +++++ G
Sbjct: 498 GKCGRLDDALSLFYQIPR-VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEG 548



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 164/332 (49%), Gaps = 30/332 (9%)

Query: 2   ANLNALLQKCSSNG----AVSHIHI-----------KQLQAHLTTTGQFQSKLFPVRSKI 46
           A+ NAL Q C  NG     +  +H            K L A L  +   Q+    + +K+
Sbjct: 36  ASANAL-QDCWKNGNESKEIDDVHTLFRYCTNLQSAKCLHARLVVSNAIQN--VCISAKL 92

Query: 47  IEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQ-MLRGSHR 105
           +  Y    L  +A A   F  I+      +N ++ G   +   +  +  +   ML    +
Sbjct: 93  VNLYCY--LGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQ 150

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            D  T    LKAC  V    +  +IH   L+ GF+ D  +  +L+ +Y + G +V+A+ +
Sbjct: 151 PDYRTFPSVLKACRNVT---DGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARIL 207

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FDEM  RD+ SWNA+I+G  Q   A EA+ L      +G+   + VTV+  L+AC   G 
Sbjct: 208 FDEMPTRDMGSWNAMISGYCQSGNAKEALTL-----SDGLRAMDSVTVVSLLSACTEAGD 262

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
           +  G  IH Y  +  L+  + V N +ID+YA+ G L    +VFD +  R  L++WN+++ 
Sbjct: 263 FNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVR-DLISWNSIIK 321

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           A+ ++    RA+ LF++M  + ++PD ++ ++
Sbjct: 322 AYELNEQPLRAILLFQEMRLSRIQPDCLTLIS 353


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/521 (38%), Positives = 326/521 (62%), Gaps = 4/521 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSK-PTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           +F Q+   +   + A++     S +    A+  + +M+ G  R +  + S  LKAC  + 
Sbjct: 309 VFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 368

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
             +   Q++S+ ++ G  +   +G +L+ +YA+ G +  A+K FD +  +++ S+NA++ 
Sbjct: 369 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 428

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G A+   + EA  LF  +   G+   +  T    L+    +GA  +G++IH  + +    
Sbjct: 429 GYAKNLKSEEAFLLFNEIADTGI-GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK 487

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            N  +CNA+I MY++CG ++ AF+VF+ ++ R ++++W +M+  FA HG   RALE+F +
Sbjct: 488 SNQCICNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHK 546

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAG 361
           M   G KP++++Y+A L AC+H G++ +G + FNSM    G+ P M+HY  +VDLLGR+G
Sbjct: 547 MLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSG 606

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L EA + + S+ +  D ++W+TLLGAC+++G+ E+   A+  ++E   ++   ++LLSN
Sbjct: 607 LLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSN 666

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           L+A+  +W DV ++RK+MK R++ K  G S+IEV   +H+F   + SH +  +IY++LD+
Sbjct: 667 LHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQ 726

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           +  KIKE GY   T  VLHDI EE+KE  L  HSEK+AVAFGLISTS++  I++FKNLR+
Sbjct: 727 LASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRV 786

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH  IK IS    REI+VRD  RFH  K+G CSC DYW
Sbjct: 787 CGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 169/358 (47%), Gaps = 7/358 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A+ +F ++   +   +  ++   A      +A+  +  M    +  D  T S  L 
Sbjct: 198 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 257

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV---GEIVSAKKVFDEMGVRD 173
           AC  +  L    Q+HS V+R G   D  +G +L+D+YAK    G +  ++KVF++M   +
Sbjct: 258 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 317

Query: 174 IASWNALIAGLAQ-GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           + SW A+I    Q G    EA++LF +M + G  +PN  +    L ACG+L     G+++
Sbjct: 318 VMSWTAIITAYVQSGECDKEAIELFCKM-ISGHIRPNHFSFSSVLKACGNLSDPYTGEQV 376

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           + Y  +  +     V N++I MYA+ G ++ A + FD I   K+LV++N +V  +A +  
Sbjct: 377 YSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD-ILFEKNLVSYNAIVDGYAKNLK 435

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
              A  LF ++   G+     ++ + L      G +  G ++   +   G K N     +
Sbjct: 436 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 495

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
           ++ +  R G ++ A  +   +    +++ W +++     +G    A     K++E G+
Sbjct: 496 LISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 552



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 138/264 (52%), Gaps = 5/264 (1%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           M + +   D  T S  LK+C R         +H  +++ G   D+++  TL+ +Y+K G+
Sbjct: 35  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 94

Query: 159 IVSAKKVFDEMG-VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
             +A+ +F+ MG  RD+ SW+A+++  A  ++  +A+  F  M +E  F PNE      +
Sbjct: 95  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM-LELGFYPNEYCFAAVI 153

Query: 218 AACGHLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAK-CGLLDKAFEVFDNIKCRK 275
            AC +      G+ I+ ++ +   L+ +V V   +IDM+ K  G L  A++VFD +   +
Sbjct: 154 RACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMP-ER 212

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
           +LVTW  M+  FA  G    A++LF  M  +G  PD  +Y + L AC   GL+  G +L 
Sbjct: 213 NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLH 272

Query: 336 NSMANCGVKPNMKHYGSVVDLLGR 359
           + +   G+  ++    S+VD+  +
Sbjct: 273 SRVIRLGLALDVCVGCSLVDMYAK 296



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 6/150 (4%)

Query: 178 NALIAGLAQGNL--ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           N LI  L  G L  A   +DL  +        P+  T    L +C     ++ G  +H  
Sbjct: 14  NRLIRQLDVGRLHHAFSTLDLMTQQNA----PPDLTTYSILLKSCIRFRNFQLGKLVHRK 69

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           + +  L+++ VV N +I +Y+KCG  + A  +F+ +  ++ LV+W+ MV  FA +    +
Sbjct: 70  LMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQ 129

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHA 325
           A+  F  M   G  P++  + A + AC++A
Sbjct: 130 AIWTFLDMLELGFYPNEYCFAAVIRACSNA 159


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/542 (38%), Positives = 316/542 (58%), Gaps = 5/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + ++  YA   L  L  A  +F ++  PST  + A++     +     AV   R    
Sbjct: 155 VLTSLLTLYARCGL--LHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFA 212

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              R D+ T    L ACARV  L     +     + G      + T  +D+Y K GE+  
Sbjct: 213 NGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAK 272

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A++VFD+M  +D  +W A++ G A      EA+DLF  M+ EGV +P+   V GAL+AC 
Sbjct: 273 AREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGV-RPDCYAVAGALSACT 331

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            LGA   G +    +  +    N V+  A+IDMYAKCG   +A+ VF  ++ +K ++ WN
Sbjct: 332 RLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMR-KKDIIVWN 390

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            M++   + G    A  L  QM ++GVK +D +++  LC+C H GL+ DG R F++M   
Sbjct: 391 AMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 450

Query: 342 -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + P ++HYG +VDLL RAG LQEA  ++  + M  + V+   LLG C+++ + E+AE 
Sbjct: 451 YHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEH 510

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
              +L+ +   N G++V+LSN+Y+   RW+D  ++R  MK + V+KVP  S++E  G +H
Sbjct: 511 VLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVH 570

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
           +F   DKSH    +IY+KLDE+  ++K  GY   T  V+ D+ +EEKE+ L +HSEKLA+
Sbjct: 571 EFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAI 630

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AF L+ T    +I+V KNLR+C DCH  IKLIS++ +REIIVRD  RFH F+DG+CSC D
Sbjct: 631 AFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCND 690

Query: 581 YW 582
           YW
Sbjct: 691 YW 692



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 3/182 (1%)

Query: 208 PNEVTVLGALAACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           P+ +T   AL +   L    + G+++H    +     N  V  +++ +YA+CGLL +A  
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 174

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VFD +    S V+W  ++ A+   GD   A+ +       G++PD  + +  L AC    
Sbjct: 175 VFDEMP-HPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVA 233

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            +  G  ++ +    G+  ++    + VDL  + G + +A ++   +    D V W  ++
Sbjct: 234 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMR-DKDAVAWGAMV 292

Query: 387 GA 388
           G 
Sbjct: 293 GG 294


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 348/584 (59%), Gaps = 21/584 (3%)

Query: 16  AVSHIHI----KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAP 71
           A SH+ +    K+L A+    G      F V S +++ Y      ++     +F  +   
Sbjct: 311 ACSHLEMLRTGKELHAYALKNGSLDENSF-VGSALVDMYC--NCKQVLSGRRVFDGMFDR 367

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLALFETLQI 130
               +NA++ G + +     A+L +  M   +   +++ T +  + AC R  A      I
Sbjct: 368 KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 427

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H  V++ G   D  +  TL+D+Y+++G+I  A ++F +M  RD+ +WN +I G       
Sbjct: 428 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 487

Query: 191 SEAVDLFKRMK------MEGV----FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
            +A+ L  +M+       +G      KPN +T++  L +C  L A  +G +IH Y  +  
Sbjct: 488 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 547

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L  +V V +A++DMYAKCG L  + +VFD I  +K+++TWN ++MA+ +HG+G  A++L 
Sbjct: 548 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQEAIDLL 606

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGR 359
             M   GVKP++V++++   AC+H+G+VD+G+R+F  M  + GV+P+  HY  VVDLLGR
Sbjct: 607 RMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGR 666

Query: 360 AGRLQEACDIVKSVSMGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           AGR++EA  ++  +    +    W +LLGA +++ ++E+ EIA++ L+++  N    +VL
Sbjct: 667 AGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVL 726

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           L+N+Y++   WD    VR+ MK + V+K PG S+IE G  +HKF   D SH +  ++   
Sbjct: 727 LANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGY 786

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+ +  ++++ GY   TSCVLH++ E+EKE  LC HSEKLA+AFG+++TS  T I+V KN
Sbjct: 787 LETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKN 846

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH   K ISK+ +REII+RD  RFHRFK+G CSC DYW
Sbjct: 847 LRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 178/370 (48%), Gaps = 14/370 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ AH+   G +      V + ++  Y      +    + +F +I+  +   +N+++  
Sbjct: 117 KQIHAHVYKFG-YGVDSVTVANTLVNLY--RKCGDFGAVYKVFDRISERNQVSWNSLISS 173

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL----QIHSHVLRHG 138
           L    K   A+  +R ML  +    + T    + AC+  L + E L    Q+H++ LR G
Sbjct: 174 LCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN-LPMPEGLMMGKQVHAYGLRKG 232

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
            L ++ +  TL+ +Y K+G++ S+K +    G RD+ +WN +++ L Q     EA++  +
Sbjct: 233 EL-NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLR 291

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAK 257
            M +EGV +P+E T+   L AC HL   + G ++H Y ++   LD N  V +A++DMY  
Sbjct: 292 EMVLEGV-EPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCN 350

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDDVSYL 316
           C  +     VFD +  RK +  WN M+  ++ +     AL LF  M   AG+  +  +  
Sbjct: 351 CKQVLSGRRVFDGMFDRK-IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 409

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
             + AC  +G       +   +   G+  +     +++D+  R G++  A  I   +   
Sbjct: 410 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-D 468

Query: 377 TDMVLWQTLL 386
            D+V W T++
Sbjct: 469 RDLVTWNTMI 478



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 9/261 (3%)

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           +LR    S+    AVL Y  M+    + D       LKA A +  +    QIH+HV + G
Sbjct: 68  LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127

Query: 139 FLADAL-LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           +  D++ +  TL+++Y K G+  +  KVFD +  R+  SWN+LI+ L        A++ F
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 187

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLG---AWKEGDKIHEY-IREERLDMNVVVCNAVID 253
           + M  E V +P+  T++  + AC +L        G ++H Y +R+  L  N  + N ++ 
Sbjct: 188 RCMLDENV-EPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL--NSFIINTLVA 244

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313
           MY K G L  +  +  +   R  LVTWNT++ +   +     ALE   +M   GV+PD+ 
Sbjct: 245 MYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 314 SYLAALCACNHAGLVDDGVRL 334
           +  + L AC+H  ++  G  L
Sbjct: 304 TISSVLPACSHLEMLRTGKEL 324


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/568 (38%), Positives = 336/568 (59%), Gaps = 14/568 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALS-PLNELAYAHALFRQINAPSTNDFNAV 79
            ++Q+ AHL  TG  +S     RS + +   L+     +AY H LF  +  P    FN+V
Sbjct: 24  QLQQVHAHLIVTGYGRS-----RSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSV 78

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           ++  +    P + V +YR+ML  +      T +  +K+CA + AL     +H H +  GF
Sbjct: 79  IKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGF 138

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
             D  +   L+  Y+K G++  A++VFD M  + I +WN+L++G  Q  LA EA+ +F +
Sbjct: 139 GLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQ 198

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+  G F+P+  T +  L+AC   GA   G  +H+YI  E LD+NV +  A+I++Y++CG
Sbjct: 199 MRESG-FEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCG 257

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAA 318
            + KA EVFD +K   ++  W  M+ A+  HG G +A+ELF +M    G  P++V+++A 
Sbjct: 258 DVGKAREVFDKMK-ETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAV 316

Query: 319 LCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIV---KSVS 374
           L AC HAGLV++G  ++  M     + P ++H+  +VD+LGRAG L EA   +    +  
Sbjct: 317 LSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATG 376

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
             T   LW  +LGAC+++ + ++    +++L+ +  +N G  V+LSN+YA   + D+V  
Sbjct: 377 KATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSH 436

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R  M   +++K  G+S IEV    + F   D+SH +  EIY  L+ ++ + KE GYA  
Sbjct: 437 IRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPV 496

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           +  V+H + EEEKE AL YHSEKLAVAFGL+ T +  +I + KNLRIC DCH   K IS 
Sbjct: 497 SEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISI 555

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V NR+I VRD++RFH F++G+CSC DYW
Sbjct: 556 VSNRQITVRDKLRFHHFQNGSCSCLDYW 583


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 327/559 (58%), Gaps = 34/559 (6%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  +F  I       +N+++ G      P  A+  +++M     ++  +T    L 
Sbjct: 183 DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLS 242

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM------- 169
           ACA++  L    ++ S++  +    +  L   +LD+Y K G I  AK++FD M       
Sbjct: 243 ACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 302

Query: 170 ------------------------GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
                                     +DI +WNALI+   Q    +EA+ +F  ++++  
Sbjct: 303 WTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKN 362

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
            K N++T++  L+AC  +GA + G  IH YI++  + MN  V +A+I MY+KCG L+KA 
Sbjct: 363 IKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAR 422

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
           EVF++++ R   V W+ M+   A+HG G  A+++F +M  A VKP+ V++    CAC+H 
Sbjct: 423 EVFNSVEKRDVFV-WSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 481

Query: 326 GLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
           GLVD+   LF  M ++ G+ P  KHY  +VD+LGR+G L++A   ++++ +     +W  
Sbjct: 482 GLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGA 541

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444
           LLGAC+++ ++ +AE+A  +L+E+   N G  VLLSN+YA   +WD+V  +RK M+   +
Sbjct: 542 LLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGL 601

Query: 445 KKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
           KK PG S IE+ G+IH+F + D +H    ++Y KL E+M K+K  GY    S VL  I E
Sbjct: 602 KKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEE 661

Query: 505 EE-KENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
           EE KE +L  HSEKLA+ +GLIST    +I+V KNLR+C DCH V KLIS++YNREIIVR
Sbjct: 662 EEMKEQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVR 721

Query: 564 DRVRFHRFKDGACSCKDYW 582
           DR RFH F++G CSC D+W
Sbjct: 722 DRYRFHHFRNGQCSCNDFW 740



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 205/421 (48%), Gaps = 42/421 (9%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L+ +CSS        +KQ  AH+  TG F        SK+    ALS    L YA  +F
Sbjct: 36  SLIDRCSSLR-----QLKQTHAHMIRTGMFSDPY--SASKLFAIAALSSFASLEYARKVF 88

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR--SDALTCSFALKACARVLA 123
            +I  P++  +N ++R  A    P  ++  +  M+    +   +  T  F +KA A V +
Sbjct: 89  DEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSS 148

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L     +H   ++    +D  +  +L+  Y   G++ SA KVF  +  +D+ SWN++I G
Sbjct: 149 LSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMING 208

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q     +A++LFK+M+ E V K + VT++G L+AC  +   + G ++  YI E R+++
Sbjct: 209 FVQKGSPDKALELFKKMESEDV-KASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNV 267

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFD------------------------------NIKC 273
           N+ + NA++DMY KCG ++ A  +FD                              N   
Sbjct: 268 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMP 327

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGV 332
           +K +V WN ++ A+  +G    AL +F ++  +  +K + ++ ++ L AC   G ++ G 
Sbjct: 328 KKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGR 387

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            + + +   G+K N     +++ +  + G L++A ++  SV    D+ +W  ++G   ++
Sbjct: 388 WIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMH 446

Query: 393 G 393
           G
Sbjct: 447 G 447



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 147/312 (47%), Gaps = 11/312 (3%)

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA--KVGEIVSAKKVFDEMGVRDIASW 177
           R  +L +  Q H+H++R G  +D    + L  + A      +  A+KVFDE+   +  +W
Sbjct: 40  RCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTW 99

Query: 178 NALIAGLAQGNLASEAVDLFKRM-KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           N LI   A G     ++  F  M   E    PN+ T    + A   + +   G  +H   
Sbjct: 100 NTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMA 159

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +  +  +V V N++I  Y  CG LD A +VF  IK  K +V+WN+M+  F   G   +A
Sbjct: 160 IKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK-EKDVVSWNSMINGFVQKGSPDKA 218

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           LELF++M    VK   V+ +  L AC     ++ G R+ + +    V  N+    +++D+
Sbjct: 219 LELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDM 278

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
             + G +++A  +  ++    D V W T+L    +  D E    A+R+++        D 
Sbjct: 279 YTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYE----AAREVLNAMPKK--DI 331

Query: 417 VLLSNLYAAYER 428
           V  + L +AYE+
Sbjct: 332 VAWNALISAYEQ 343


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 348/584 (59%), Gaps = 21/584 (3%)

Query: 16  AVSHIHI----KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAP 71
           A SH+ +    K+L A+    G      F V S +++ Y      ++     +F  +   
Sbjct: 224 ACSHLEMLRTGKELHAYALKNGSLDENSF-VGSALVDMYC--NCKQVLSGRRVFDGMFDR 280

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLALFETLQI 130
               +NA++ G + +     A+L +  M   +   +++ T +  + AC R  A      I
Sbjct: 281 KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 340

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H  V++ G   D  +  TL+D+Y+++G+I  A ++F +M  RD+ +WN +I G       
Sbjct: 341 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 400

Query: 191 SEAVDLFKRMK------MEGV----FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
            +A+ L  +M+       +G      KPN +T++  L +C  L A  +G +IH Y  +  
Sbjct: 401 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 460

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L  +V V +A++DMYAKCG L  + +VFD I  +K+++TWN ++MA+ +HG+G  A++L 
Sbjct: 461 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQEAIDLL 519

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGR 359
             M   GVKP++V++++   AC+H+G+VD+G+R+F  M  + GV+P+  HY  VVDLLGR
Sbjct: 520 RMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGR 579

Query: 360 AGRLQEACDIVKSVSMGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           AGR++EA  ++  +    +    W +LLGA +++ ++E+ EIA++ L+++  N    +VL
Sbjct: 580 AGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVL 639

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           L+N+Y++   WD    VR+ MK + V+K PG S+IE G  +HKF   D SH +  ++   
Sbjct: 640 LANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGY 699

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+ +  ++++ GY   TSCVLH++ E+EKE  LC HSEKLA+AFG+++TS  T I+V KN
Sbjct: 700 LETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKN 759

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH   K ISK+ +REII+RD  RFHRFK+G CSC DYW
Sbjct: 760 LRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 178/370 (48%), Gaps = 14/370 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ AH+   G +      V + ++  Y      +    + +F +I+  +   +N+++  
Sbjct: 30  KQIHAHVYKFG-YGVDSVTVANTLVNLY--RKCGDFGAVYKVFDRISERNQVSWNSLISS 86

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL----QIHSHVLRHG 138
           L    K   A+  +R ML  +    + T    + AC+  L + E L    Q+H++ LR G
Sbjct: 87  LCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN-LPMPEGLMMGKQVHAYGLRKG 145

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
            L ++ +  TL+ +Y K+G++ S+K +    G RD+ +WN +++ L Q     EA++  +
Sbjct: 146 EL-NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLR 204

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAK 257
            M +EGV +P+E T+   L AC HL   + G ++H Y ++   LD N  V +A++DMY  
Sbjct: 205 EMVLEGV-EPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCN 263

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDDVSYL 316
           C  +     VFD +  RK +  WN M+  ++ +     AL LF  M   AG+  +  +  
Sbjct: 264 CKQVLSGRRVFDGMFDRK-IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 322

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
             + AC  +G       +   +   G+  +     +++D+  R G++  A  I   +   
Sbjct: 323 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-D 381

Query: 377 TDMVLWQTLL 386
            D+V W T++
Sbjct: 382 RDLVTWNTMI 391



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADAL-LGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           LKA A +  +    QIH+HV + G+  D++ +  TL+++Y K G+  +  KVFD +  R+
Sbjct: 17  LKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERN 76

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG---AWKEGD 230
             SWN+LI+ L        A++ F+ M  E V +P+  T++  + AC +L        G 
Sbjct: 77  QVSWNSLISSLCSFEKWEMALEAFRCMLDENV-EPSSFTLVSVVTACSNLPMPEGLMMGK 135

Query: 231 KIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
           ++H Y +R+  L  N  + N ++ MY K G L  +  +  +   R  LVTWNT++ +   
Sbjct: 136 QVHAYGLRKGEL--NSFIINTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQ 192

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           +     ALE   +M   GV+PD+ +  + L AC+H  ++  G  L
Sbjct: 193 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 237


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/532 (40%), Positives = 327/532 (61%), Gaps = 9/532 (1%)

Query: 58  LAYAHALFRQINAPSTND-FNAVLRGLAHSSKPTNA-----VLWYRQMLRGSHRSDALTC 111
           LAYA  +F ++  PS    +N +LRG A SS  +++     V  + +ML      D  T 
Sbjct: 77  LAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTF 136

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
              LKACA   A     Q H+  ++ G      +  TL+++YA+ G+  +A+  F     
Sbjct: 137 VSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADG 196

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
             + S+NA+IA   + +   EA+ LF+ M+ +G+  P  VTV+  L+AC  LGA + G  
Sbjct: 197 DCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGL-NPTPVTVISVLSACALLGALQLGRW 255

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +H+Y+R+  L   V V  A++DMYAKCG L+ A  VF  ++ R     W+ M++A+A HG
Sbjct: 256 LHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQ-AWSVMIVAYANHG 314

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
            G  A+ LFE+M + G+KPDD+++L  L AC+H+GLV +G+R F+ M + G+ P +KHYG
Sbjct: 315 YGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDMKDHGIVPGIKHYG 374

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            V DLL R+G+L+ A   +  + +    +LW+TLL AC  +GDVE+ +    +++E+  +
Sbjct: 375 CVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFERILELDDS 434

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           + GD+V+ SNL A    W+++ RVRK M ++ V KVPG S IE+   +H+FF  D  H K
Sbjct: 435 HGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHPK 494

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEA 530
            +E  + +DE++ ++K  GY   TS V H ++GEEEK  +L YHSEKLA+AFGL++T+  
Sbjct: 495 SQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPG 554

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +++V KNLR+C DCH + K +S V+NR II+RD  RFH F+ G CSC DYW
Sbjct: 555 ATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGICSCGDYW 606


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/605 (36%), Positives = 345/605 (57%), Gaps = 57/605 (9%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNAV 79
           H KQL AH+      QS    V + ++ F    P +    Y H LF Q+++P+   ++A+
Sbjct: 26  HAKQLHAHIYRNNLHQSSY--VITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSAL 83

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL-------QIHS 132
           +R  A +    +++  Y  ML  +    + T S          ALF  L       Q+H 
Sbjct: 84  IRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFS----------ALFSLLKNPSLGSQLHL 133

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI----------- 181
           H    GF+ D  +G T++ +Y K G +  A+KVFDEM  RD+ +W  LI           
Sbjct: 134 HAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDS 193

Query: 182 --------------------AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
                                G +Q  +  +A+  F++M+  GV   +E+T++GA++AC 
Sbjct: 194 ACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVT-DEITLVGAISACA 252

Query: 222 HLGAWKEGDKIHEYIREERLDM--NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
            LG     D I E     R     NV V +A+IDMY+KCG +++A+ VF  +K   ++ +
Sbjct: 253 QLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMK-EMNVFS 311

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           +++M++ FAVHG    A++LF +M   G+KP+ V+++    AC+HAG+V+ G +LF +M 
Sbjct: 312 YSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMK 371

Query: 340 NC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            C GV P   HY  + DLLGRAG L++A  +V+++ M  +  +W  LLGA  ++G+ ++A
Sbjct: 372 ECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVA 431

Query: 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEV-GG 457
           EIASR L E+  +N G+++LLS  YA   +WDDV RVRK M+ + ++K PG S++E   G
Sbjct: 432 EIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNG 491

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
           +IH+FF  D  H +  EI + LD+++ ++K  GY    + V +DI +E K   L  HSEK
Sbjct: 492 IIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEK 551

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LA+A+GL+ST   ++I++ KNLRIC DCH V+   SK+  R+IIVRD +RFH F +GACS
Sbjct: 552 LALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACS 611

Query: 578 CKDYW 582
           C ++W
Sbjct: 612 CNNFW 616


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 348/584 (59%), Gaps = 21/584 (3%)

Query: 16  AVSHIHI----KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAP 71
           A SH+ +    K+L A+    G      F V S +++ Y      ++     +F  +   
Sbjct: 311 ACSHLEMLRTGKELHAYALKNGSLDENSF-VGSALVDMYC--NCKQVLSGRRVFDGMFDR 367

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLALFETLQI 130
               +NA++ G + +     A+L +  M   +   +++ T +  + AC R  A      I
Sbjct: 368 KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 427

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H  V++ G   D  +  TL+D+Y+++G+I  A ++F +M  RD+ +WN +I G       
Sbjct: 428 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 487

Query: 191 SEAVDLFKRMK------MEGV----FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
            +A+ L  +M+       +G      KPN +T++  L +C  L A  +G +IH Y  +  
Sbjct: 488 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 547

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L  +V V +A++DMYAKCG L  + +VFD I  +K+++TWN ++MA+ +HG+G  A++L 
Sbjct: 548 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQEAIDLL 606

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGR 359
             M   GVKP++V++++   AC+H+G+VD+G+R+F  M  + GV+P+  HY  VVDLLGR
Sbjct: 607 RMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGR 666

Query: 360 AGRLQEACDIVKSVSMGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           AGR++EA  ++  +    +    W +LLGA +++ ++E+ EIA++ L+++  N    +VL
Sbjct: 667 AGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVL 726

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           L+N+Y++   WD    VR+ MK + V+K PG S+IE G  +HKF   D SH +  ++   
Sbjct: 727 LANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGY 786

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+ +  ++++ GY   TSCVLH++ E+EKE  LC HSEKLA+AFG+++TS  T I+V KN
Sbjct: 787 LETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKN 846

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH   K ISK+ +REII+RD  RFHRFK+G CSC DYW
Sbjct: 847 LRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 178/370 (48%), Gaps = 14/370 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ AH+   G +      V + ++  Y      +    + +F +I+  +   +N+++  
Sbjct: 117 KQIHAHVYKFG-YGVDSVTVANTLVNLY--RKCGDFGAVYKVFDRISERNQVSWNSLISS 173

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL----QIHSHVLRHG 138
           L    K   A+  +R ML  +    + T    + AC+  L + E L    Q+H++ LR G
Sbjct: 174 LCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN-LPMPEGLMMGKQVHAYGLRKG 232

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
            L ++ +  TL+ +Y K+G++ S+K +    G RD+ +WN +++ L Q     EA++  +
Sbjct: 233 EL-NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLR 291

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAK 257
            M +EGV +P+E T+   L AC HL   + G ++H Y ++   LD N  V +A++DMY  
Sbjct: 292 EMVLEGV-EPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCN 350

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDDVSYL 316
           C  +     VFD +  RK +  WN M+  ++ +     AL LF  M   AG+  +  +  
Sbjct: 351 CKQVLSGRRVFDGMFDRK-IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 409

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
             + AC  +G       +   +   G+  +     +++D+  R G++  A  I   +   
Sbjct: 410 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-D 468

Query: 377 TDMVLWQTLL 386
            D+V W T++
Sbjct: 469 RDLVTWNTMI 478



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 9/261 (3%)

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           +LR    S+    AVL Y  M+    + D       LKA A +  +    QIH+HV + G
Sbjct: 68  LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127

Query: 139 FLADAL-LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           +  D++ +  TL+++Y K G+  +  KVFD +  R+  SWN+LI+ L        A++ F
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 187

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLG---AWKEGDKIHEY-IREERLDMNVVVCNAVID 253
           + M  E V +P+  T++  + AC +L        G ++H Y +R+  L  N  + N ++ 
Sbjct: 188 RCMLDENV-EPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL--NSFIINTLVA 244

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313
           MY K G L  +  +  +   R  LVTWNT++ +   +     ALE   +M   GV+PD+ 
Sbjct: 245 MYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 314 SYLAALCACNHAGLVDDGVRL 334
           +  + L AC+H  ++  G  L
Sbjct: 304 TISSVLPACSHLEMLRTGKEL 324


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/547 (37%), Positives = 332/547 (60%), Gaps = 6/547 (1%)

Query: 37  SKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWY 96
           +KL  + + + + Y  S    +  A  +F  ++  +   +N+++ G   + +P  A+  +
Sbjct: 280 AKLVNISTALADMY--SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVF 337

Query: 97  RQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV 156
            +ML        +T   AL ACA +  L     +H  V +    +D  +  +L+ +Y+K 
Sbjct: 338 EKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKC 397

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
             +  A  +F+ +  R   SWNA+I G AQ    SEA++ F  MK  G+ KP+  T++  
Sbjct: 398 KRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGM-KPDSFTMVSV 456

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
           + A   L   +    IH  I    LD N+ V  A++DMY+KCG +  A ++FD I  R  
Sbjct: 457 IPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRH- 515

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFN 336
           ++TWN M+  +  HG G  AL+LF++M +  V+P+D++YL+ + AC+H+GLVD+G+R F 
Sbjct: 516 VITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFK 575

Query: 337 SM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395
           SM  + G++P+M HYG++VDLLGRAGR++EA D ++++ +   + ++  +LGAC+++ ++
Sbjct: 576 SMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNI 635

Query: 396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEV 455
           E+ E A++KL E+  +  G  VLL+N+YA+  +W  V  VRK M+ + +KK PG S +E+
Sbjct: 636 EVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVEL 695

Query: 456 GGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHS 515
              +H F++   +H + + IY  L+E++++IK  GY   T+ +L D+ ++ +E  L  HS
Sbjct: 696 RNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHS 754

Query: 516 EKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGA 575
           EKLA+AFGL++TS  T+I V KNLR+C DCH+  K IS V  REIIVRD  RFH FK+G 
Sbjct: 755 EKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGI 814

Query: 576 CSCKDYW 582
           CSC DYW
Sbjct: 815 CSCGDYW 821



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 191/385 (49%), Gaps = 13/385 (3%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL+ C+S   +  I    ++  L     FQ+KL  + SK         +NE A    +F 
Sbjct: 55  LLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSK------YGSINEAA---RVFE 105

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            I+      ++ +L+G A +S    A+ +  +M     +      ++ LK C     L  
Sbjct: 106 PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKR 165

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             +IH  ++ + F A+    T ++++YAK  +I  A K+FD M  RD+ SWN +IAG +Q
Sbjct: 166 GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQ 225

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
              A +A++L  RM+ EG  +P+ +T++  L A   +G    G  IH Y         V 
Sbjct: 226 NGFAKKALELVLRMQDEGQ-RPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVN 284

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           +  A+ DMY+KCG ++ A  +FD +  +K++V+WN+M+  +  +G+  +A+ +FE+M   
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMD-QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEE 343

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           G+ P  V+ + AL AC   G ++ G  +   +    +  ++    S++ +  +  R+  A
Sbjct: 344 GIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIA 403

Query: 367 CDIVKSVSMGTDMVLWQTL-LGACQ 390
            DI  +++ G   V W  + LG  Q
Sbjct: 404 SDIFNNLN-GRTHVSWNAMILGYAQ 427


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/584 (39%), Positives = 351/584 (60%), Gaps = 12/584 (2%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKI-IEFYALSPLNELAYA 61
           N  ALLQ C++   ++ IH   L+  L       +K   + S I    YA S    L  A
Sbjct: 31  NCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAAS---FLFSA 87

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTN-AVLWYRQMLRGSHRSDALTCSFALKACAR 120
            A  R  +A     FN ++R  A +    + A+  Y  ML  +   +  T  F LKACA 
Sbjct: 88  EADTRLYDA---FLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAG 144

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK-VGEIVSAKKVFDEMGVRDIASWNA 179
           +  L     +H  V++ GF  D  +  T++ +Y+   G I SA+KVFDEM   D  +W+A
Sbjct: 145 LEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSA 204

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I G A+   ++EAV LF+ M+M  V  P+E+T++  L+AC  LGA + G  I  YI   
Sbjct: 205 MIGGYARVGRSTEAVALFREMQMAEVC-PDEITMVSMLSACTDLGALELGKWIEAYIERH 263

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            +   V V NA+IDM+AKCG + KA ++F  +   K++V+W ++++  A+HG G  A  L
Sbjct: 264 EIHKPVEVSNALIDMFAKCGDISKALKLFRAMN-EKTIVSWTSVIVGMAMHGRGQEATCL 322

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLG 358
           FE+M  +GV PDDV+++  L AC+H+GLV+ G   F SM     + P ++HYG +VD+  
Sbjct: 323 FEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYC 382

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           R G ++EA + V+++ +  + V+ +TL+ AC+ +G+ ++ E  ++ L++    +  ++VL
Sbjct: 383 RTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVL 442

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YA    W+   ++R+ M+ + +KKVPG + IE+   I++F   DKSH + +EIYE 
Sbjct: 443 LSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEM 502

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           +DE+  ++K+ GY   TS VL DI EE+KE++L  HSEKLA+AFGL+ T   T I++ KN
Sbjct: 503 VDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKN 562

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH   K ISK+Y+REII+RDR RFH FK G CSC D+W
Sbjct: 563 LRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/521 (38%), Positives = 326/521 (62%), Gaps = 4/521 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSK-PTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           +F Q+   +   + A++     S +    A+  + +M+ G  R +  + S  LKAC  + 
Sbjct: 291 VFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 350

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
             +   Q++S+ ++ G  +   +G +L+ +YA+ G +  A+K FD +  +++ S+NA++ 
Sbjct: 351 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 410

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G A+   + EA  LF  +   G+   +  T    L+    +GA  +G++IH  + +    
Sbjct: 411 GYAKNLKSEEAFLLFNEIADTGI-GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK 469

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            N  +CNA+I MY++CG ++ AF+VF+ ++ R ++++W +M+  FA HG   RALE+F +
Sbjct: 470 SNQCICNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHK 528

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAG 361
           M   G KP++++Y+A L AC+H G++ +G + FNSM    G+ P M+HY  +VDLLGR+G
Sbjct: 529 MLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSG 588

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L EA + + S+ +  D ++W+TLLGAC+++G+ E+   A+  ++E   ++   ++LLSN
Sbjct: 589 LLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSN 648

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           L+A+  +W DV ++RK+MK R++ K  G S+IEV   +H+F   + SH +  +IY++LD+
Sbjct: 649 LHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQ 708

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           +  KIKE GY   T  VLHDI EE+KE  L  HSEK+AVAFGLISTS++  I++FKNLR+
Sbjct: 709 LASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRV 768

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH  IK IS    REI+VRD  RFH  K+G CSC DYW
Sbjct: 769 CGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 169/358 (47%), Gaps = 7/358 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A+ +F ++   +   +  ++   A      +A+  +  M    +  D  T S  L 
Sbjct: 180 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 239

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV---GEIVSAKKVFDEMGVRD 173
           AC  +  L    Q+HS V+R G   D  +G +L+D+YAK    G +  ++KVF++M   +
Sbjct: 240 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 299

Query: 174 IASWNALIAGLAQ-GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           + SW A+I    Q G    EA++LF +M + G  +PN  +    L ACG+L     G+++
Sbjct: 300 VMSWTAIITAYVQSGECDKEAIELFCKM-ISGHIRPNHFSFSSVLKACGNLSDPYTGEQV 358

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           + Y  +  +     V N++I MYA+ G ++ A + FD I   K+LV++N +V  +A +  
Sbjct: 359 YSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD-ILFEKNLVSYNAIVDGYAKNLK 417

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
              A  LF ++   G+     ++ + L      G +  G ++   +   G K N     +
Sbjct: 418 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 477

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
           ++ +  R G ++ A  +   +    +++ W +++     +G    A     K++E G+
Sbjct: 478 LISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 534



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 138/264 (52%), Gaps = 5/264 (1%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           M + +   D  T S  LK+C R         +H  +++ G   D+++  TL+ +Y+K G+
Sbjct: 17  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 76

Query: 159 IVSAKKVFDEMG-VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
             +A+ +F+ MG  RD+ SW+A+++  A  ++  +A+  F  M +E  F PNE      +
Sbjct: 77  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM-LELGFYPNEYCFAAVI 135

Query: 218 AACGHLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAK-CGLLDKAFEVFDNIKCRK 275
            AC +      G+ I+ ++ +   L+ +V V   +IDM+ K  G L  A++VFD +   +
Sbjct: 136 RACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMP-ER 194

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
           +LVTW  M+  FA  G    A++LF  M  +G  PD  +Y + L AC   GL+  G +L 
Sbjct: 195 NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLH 254

Query: 336 NSMANCGVKPNMKHYGSVVDLLGR 359
           + +   G+  ++    S+VD+  +
Sbjct: 255 SRVIRLGLALDVCVGCSLVDMYAK 278


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/524 (38%), Positives = 328/524 (62%), Gaps = 4/524 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSK-PTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           A  +F ++   +   + A++ G   S      A+  + +M++G  + +  T S  LKACA
Sbjct: 202 ARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACA 261

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            +  ++   Q+++ V++    +   +G +L+ +Y++ G + +A+K FD +  +++ S+N 
Sbjct: 262 NLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNT 321

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           ++   A+   + EA +LF  ++  G    N  T    L+    +GA  +G++IH  I + 
Sbjct: 322 IVNAYAKSLNSEEAFELFNEIEGAGT-GVNAFTFASLLSGASSIGAIGKGEQIHSRILKS 380

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
               N+ +CNA+I MY++CG ++ AF+VF+ +    ++++W +M+  FA HG   RALE 
Sbjct: 381 GFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWTSMITGFAKHGFATRALET 439

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLG 358
           F +M  AGV P++V+Y+A L AC+H GL+ +G++ F SM    G+ P M+HY  VVDLLG
Sbjct: 440 FHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLG 499

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           R+G L+EA ++V S+    D ++ +T LGAC+++G++++ + A+  ++E   ++   ++L
Sbjct: 500 RSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYIL 559

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSNL+A+  +W++V  +RK MK R++ K  G S+IEV   +HKF+  D SH + +EIY++
Sbjct: 560 LSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDE 619

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           LD++  KIKE GY   T  VLHD+ EE+KE  L  HSEK+AVA+G ISTS +  I+VFKN
Sbjct: 620 LDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKN 679

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH   K  S V  +EI++RD  RFH FKDG CSC DYW
Sbjct: 680 LRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 189/406 (46%), Gaps = 50/406 (12%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++A++   A++ K   A+  +  ML      +    +   +AC+    +     I   +L
Sbjct: 10  WSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLL 69

Query: 136 RHGFL-ADALLGTTLLDVYAK-VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           + G+  +D  +G  L+D++ K  G++ SA KVFD M  R++ +W  +I    Q   + +A
Sbjct: 70  KTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDA 129

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253
           VDLF  M + G + P+  T+ G ++AC  +G    G + H  + +  LD++V V  +++D
Sbjct: 130 VDLFLDMVLSG-YVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVD 188

Query: 254 MYAKC---GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR-ALELFEQMGRAGVK 309
           MYAKC   G +D A +VFD +    ++++W  ++  +   G   R A+ELF +M +  VK
Sbjct: 189 MYAKCVADGSVDDARKVFDRMPVH-NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVK 247

Query: 310 PDDVSYLAALCACNH-------------------AGLVDDGVRLFNSMANCG-------- 342
           P+  ++ + L AC +                   A +   G  L +  + CG        
Sbjct: 248 PNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKA 307

Query: 343 ----VKPNMKHYGSVVDLLGRAGRLQEACDI---VKSVSMGTDMVLWQTLLGACQLYGDV 395
                + N+  Y ++V+   ++   +EA ++   ++    G +   + +LL      G +
Sbjct: 308 FDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAI 367

Query: 396 EMAEIASRKLVEMGSNN----CGDFVLL----SNLYAAYERWDDVG 433
              E    ++++ G  +    C   + +     N+ AA++ ++++G
Sbjct: 368 GKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG 413



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 4/190 (2%)

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           RD+ SW+ALI+  A    A EA+  F  M +E  F PNE    G   AC +      G  
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDM-LECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 232 IHEY-IREERLDMNVVVCNAVIDMYAKC-GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
           I  + ++    + +V V  A+IDM+ K  G L+ A++VFD +  R ++VTW  M+  F  
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDR-NVVTWTLMITRFQQ 122

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKH 349
            G    A++LF  M  +G  PD  +    + AC   GL+  G +    +   G+  ++  
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCV 182

Query: 350 YGSVVDLLGR 359
             S+VD+  +
Sbjct: 183 GCSLVDMYAK 192


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/542 (38%), Positives = 316/542 (58%), Gaps = 5/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + ++  YA   L  L  A  +F ++  PST  + A++     +     AV   R    
Sbjct: 108 VLTSLLTLYARCGL--LHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFA 165

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              R D+ T    L ACARV  L     +     + G      + T  +D+Y K GE+  
Sbjct: 166 NGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAK 225

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A++VFD+M  +D  +W A++ G A      EA+DLF  M+ EGV +P+   V GAL+AC 
Sbjct: 226 AREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGV-RPDCYAVAGALSACT 284

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            LGA   G +    +  +    N V+  A+IDMYAKCG   +A+ VF  ++ +K ++ WN
Sbjct: 285 RLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMR-KKDIIVWN 343

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            M++   + G    A  L  QM ++GVK +D +++  LC+C H GL+ DG R F++M   
Sbjct: 344 AMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 403

Query: 342 -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + P ++HYG +VDLL RAG LQEA  ++  + M  + V+   LLG C+++ + E+AE 
Sbjct: 404 YHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEH 463

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
              +L+ +   N G++V+LSN+Y+   RW+D  ++R  MK + V+KVP  S++E  G +H
Sbjct: 464 VLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVH 523

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
           +F   DKSH    +IY+KLDE+  ++K  GY   T  V+ D+ +EEKE+ L +HSEKLA+
Sbjct: 524 EFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAI 583

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AF L+ T    +I+V KNLR+C DCH  IKLIS++ +REIIVRD  RFH F+DG+CSC D
Sbjct: 584 AFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCND 643

Query: 581 YW 582
           YW
Sbjct: 644 YW 645



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 3/182 (1%)

Query: 208 PNEVTVLGALAACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           P+ +T   AL +   L    + G+++H    +     N  V  +++ +YA+CGLL +A  
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VFD +    S V+W  ++ A+   GD   A+ +       G++PD  + +  L AC    
Sbjct: 128 VFDEMP-HPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVA 186

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            +  G  ++ +    G+  ++    + VDL  + G + +A ++   +    D V W  ++
Sbjct: 187 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMR-DKDAVAWGAMV 245

Query: 387 GA 388
           G 
Sbjct: 246 GG 247


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/581 (36%), Positives = 341/581 (58%), Gaps = 11/581 (1%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           +ALL  C    A+     +++ AH+  T    +    +R++++ FY     + L  A  +
Sbjct: 55  DALLNACLDKRALREG--QRVHAHMIKTRYLPATY--LRTRLLIFYG--KCDCLEDARKV 108

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
             ++   +   + A++   + +   + A+  + +M+R   + +  T +  L +C R   L
Sbjct: 109 LDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGL 168

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               QIH  +++  + +   +G++LLD+YAK G+I  A+++F+ +  RD+ S  A+IAG 
Sbjct: 169 ALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGY 228

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           AQ  L  EA+++F+R++ EG+ +PN VT    L A   L     G + H ++    L   
Sbjct: 229 AQLGLDEEALEMFQRLQSEGM-RPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFY 287

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM- 303
            V+ N++IDMY+KCG L  A  +FDN+  R + ++WN M++ ++ HG G   LELF  M 
Sbjct: 288 AVLQNSLIDMYSKCGNLSYAQRLFDNMPERTA-ISWNAMLVGYSKHGLGREVLELFRLMR 346

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM--ANCGVKPNMKHYGSVVDLLGRAG 361
               VKPD V+ LA L  C+H  + D G+ +++ M     G+KP+ +HYG +VD+LGRAG
Sbjct: 347 DEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAG 406

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           R+ EA + +K +       +  +LLGAC+++  V++ E    +L+E+   N G++V+LSN
Sbjct: 407 RIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSN 466

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           LYA+  RW+DV  VR  M  + V K PG S+I+    +H F  +D++H +  E+  K+ E
Sbjct: 467 LYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKE 526

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           I  K+K+ GY    SCVL+D+ EE+KE  L  HSEKLA+ FGLI+T E   I+VFKNLRI
Sbjct: 527 ISIKMKQAGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRI 586

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH+  K+ SKV+ RE+ +RD+ RFH+   G CSC DYW
Sbjct: 587 CVDCHNFAKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/552 (38%), Positives = 329/552 (59%), Gaps = 33/552 (5%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++   +   ++A++    +  +   A+  +R ML      D +T +  L AC  
Sbjct: 313 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACIN 372

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              L +  Q+H+    HG L + ++   L+  Y+    +  A  +FD M VRD  SW+ +
Sbjct: 373 CRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVM 432

Query: 181 IAGLAQ-----------------------------GNLASEAVDLFKRMKMEGVFKPNEV 211
           + G A+                             GN A+E++ LF +M+ EGV  P++V
Sbjct: 433 VGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGN-ANESLVLFDKMREEGVV-PDKV 490

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
            ++  + AC  LGA  +   I +YI+ ++  ++V++  A+IDM+AKCG ++ A E+FD +
Sbjct: 491 AMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRM 550

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
           +  K++++W+ M+ A+  HG G +AL+LF  M R+G+ P+ ++ ++ L AC+HAGLV++G
Sbjct: 551 E-EKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEG 609

Query: 332 VRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
           +R F+ M  +  V+ ++KHY  VVDLLGRAGRL EA  +++S+++  D  LW   LGAC+
Sbjct: 610 LRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACR 669

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
            + DV +AE A+  L+E+   N G ++LLSN+YA   RW+DV + R  M  R +KK+PG+
Sbjct: 670 THKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGW 729

Query: 451 SYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           ++IEV    H+F   D +H + +EIYE L  +  K++  GY   T+ VLHD+ EE K   
Sbjct: 730 TWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGI 789

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           L  HSEKLA+AFGLI+T E T I++ KNLR+C DCH   KL+S +  R IIVRD  RFH 
Sbjct: 790 LYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHH 849

Query: 571 FKDGACSCKDYW 582
           FK+GACSC DYW
Sbjct: 850 FKEGACSCGDYW 861



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 200/392 (51%), Gaps = 32/392 (8%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
            ++Q+ A  +  G  ++ +  V +K+I FY  S    L  A+ LF  +    +  ++ ++
Sbjct: 96  QVRQVHAQASVHGMLENIV--VANKLIYFY--SYYRALDDAYGLFDGMCVRDSVSWSVMV 151

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
            G A      N    +R+++R   R D  T  F ++AC  +    + LQ+          
Sbjct: 152 GGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDL----KNLQM---------- 197

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
                   L+D+Y K  EI  A+ +FD+M  RD+ +W  +I G A+   A+E++ LF++M
Sbjct: 198 -------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM 250

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           + EGV  P++V ++  + AC  LGA  +   I +YI+ ++  ++V++  A+IDMYAKCG 
Sbjct: 251 REEGVV-PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGC 309

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           ++ A E+FD ++  K++++W+ M+ A+  HG G +AL+LF  M  +G+ PD ++  + L 
Sbjct: 310 VESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 368

Query: 321 AC-NHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
           AC N   L    VR  ++ A+  G+  N+     +V        L +A  +   + +  D
Sbjct: 369 ACINCRNLTQ--VRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCV-RD 425

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
            V W  ++G     GD        R+L+  G+
Sbjct: 426 SVSWSVMVGGFAKVGDYMNCFGTFRELIRCGA 457



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 167/351 (47%), Gaps = 13/351 (3%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E+  A  LF ++       +  ++ G A   K   +++ + +M       D +     + 
Sbjct: 208 EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF 267

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA++ A+ +   I  ++ R  F  D +LGT ++D+YAK G + SA+++FD M  +++ S
Sbjct: 268 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 327

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W+A+IA         +A+DLF+ M   G+  P+++T+   L AC +     +  ++H   
Sbjct: 328 WSAMIAAYGYHGQGRKALDLFRMMLSSGML-PDKITLASLLYACINCRNLTQVRQVHAQA 386

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
               +  N++V N ++  Y+    LD A+ +FD + C +  V+W+ MV  FA  GD    
Sbjct: 387 SVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGM-CVRDSVSWSVMVGGFAKVGDYMNC 445

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
              F ++ R G +PD+  Y    C   +  LV     LF+ M   GV P+     +VV  
Sbjct: 446 FGTFRELIRCGARPDN--YTLPFCGNANESLV-----LFDKMREEGVVPDKVAMVTVVFA 498

Query: 357 LGRAGRLQEAC---DIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASR 403
             + G + +A    D ++      D++L   ++      G VE A EI  R
Sbjct: 499 CAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDR 549



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 57/320 (17%)

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
           H    L   F + A      L +  Q+H+    HG L + ++   L+  Y+    +  A 
Sbjct: 74  HFLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAY 133

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
            +FD M VRD  SW+ ++ G A+          F+ +   G  +P+  T+   + AC  L
Sbjct: 134 GLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGA-RPDNYTLPFVIRACRDL 192

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
                          + L M      A++DMY KC  ++ A  +FD ++  + LVTW  M
Sbjct: 193 ---------------KNLQM------ALVDMYVKCREIEDARFLFDKMQ-ERDLVTWTVM 230

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG------LVDD------- 330
           +  +A  G    +L LFE+M   GV PD V+ +  + AC   G      ++DD       
Sbjct: 231 IGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKF 290

Query: 331 ------GVRLFNSMANCGV------------KPNMKHYGSVVDLLGRAGRLQEACDIVK- 371
                 G  + +  A CG             + N+  + +++   G  G+ ++A D+ + 
Sbjct: 291 QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRM 350

Query: 372 --SVSMGTDMVLWQTLLGAC 389
             S  M  D +   +LL AC
Sbjct: 351 MLSSGMLPDKITLASLLYAC 370


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/562 (38%), Positives = 327/562 (58%), Gaps = 24/562 (4%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTN--DFNAVLRGLAHSSKPTNAV-LWYRQ 98
           V S +++ YA +   ++A A  +F  +  PS     +NA++ G A +     A+ L+ R 
Sbjct: 320 VASALVDMYAGN--EKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRM 377

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
                      T S  L ACAR         +H +V++ G   +  +   L+D+YA++GE
Sbjct: 378 EAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGE 437

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM------------EGVF 206
           +  A+++F  +  RD+ SWN LI G      A+EA  L   M++            EG  
Sbjct: 438 MDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEA 497

Query: 207 K---PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
               PN +T++  L  C  L A   G +IH Y     L+ ++ V +A++DMYAKCG L  
Sbjct: 498 HRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAA 557

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCAC 322
           +  VFD +  R++++TWN ++MA+ +HG G  A+ LF++M   G   P++V+++AAL AC
Sbjct: 558 SRAVFDRLP-RRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAAC 616

Query: 323 NHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV- 380
           +H+GLVD G+ LF+ M  + GVKP    +  VVD+LGRAGRL EA  I+ S+  G   V 
Sbjct: 617 SHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVS 676

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
            W +LLGAC+L+ +VE+ E+A+ +L E+       +VLL N+Y+A   WD    VR  M+
Sbjct: 677 AWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMR 736

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
            + V K PG S+IE+ G IH+F   + SH    E++  +D +  +++  GYA  TSCVLH
Sbjct: 737 RQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLH 796

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           D+ E+EK   L YHSEKLA+AFGL+      +I+V KNLR+C DCH+  K +SK+  R+I
Sbjct: 797 DVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDI 856

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           ++RD  RFH F+DG+CSC DYW
Sbjct: 857 VLRDVRRFHHFRDGSCSCGDYW 878



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 141/321 (43%), Gaps = 18/321 (5%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFL--ADALLGTTLLDVYAKVGEIVSAKK 164
           D      A+K+ A +        +H+  LR   L      +G  LL  YA+ G++ +A  
Sbjct: 62  DHFALPPAIKSAAALRDARAARSLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALA 121

Query: 165 VFDEMG--VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
           +F      +RD  S+N+LI+ L        A+D  + M  EG    +  T++  L AC H
Sbjct: 122 LFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSH 181

Query: 223 LGA---WKEGDKIHEY-IREERLD--MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
           L      + G + H + ++   LD        NA++ MYA+ GL+D A  +F       S
Sbjct: 182 LPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFS 241

Query: 277 -----LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
                +VTWNTM+      G    A+E+   M   GV+PD V++ +AL AC+   ++  G
Sbjct: 242 PGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALG 301

Query: 332 VRLFN-SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLL-GA 388
             +    + +  +  N     ++VD+     ++  A  +   V   +  + +W  ++ G 
Sbjct: 302 REMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGY 361

Query: 389 CQLYGDVEMAEIASRKLVEMG 409
            Q   D E  E+ SR   E G
Sbjct: 362 AQAGMDEEALELFSRMEAEAG 382


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/508 (39%), Positives = 307/508 (60%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++ G A S    +A+   R+M     + D+ T S  L   +  + + +  +IH +V+
Sbjct: 210 YNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVI 269

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R G  +D  +G++L+D+YAK   I  +++VF  +  RD  SWN+L+AG  Q    +EA+ 
Sbjct: 270 RKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALR 329

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF++M    V KP  V     + AC HL     G ++H Y+       N+ + +A++DMY
Sbjct: 330 LFRQMVTAKV-KPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMY 388

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCG +  A ++FD +      V+W  ++M  A+HG G  A+ LFE+M R GVKP+ V++
Sbjct: 389 SKCGNIKAARKIFDRMNVLDE-VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAF 447

Query: 316 LAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +A L AC+H GLVD+    FNSM    G+   ++HY +V DLLGRAG+L+EA + +  + 
Sbjct: 448 VAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMC 507

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +     +W TLL +C ++ ++E+AE  + K+  + S N G +VL+ N+YA+  RW ++ +
Sbjct: 508 VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAK 567

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R  M+ + ++K P  S+IE+    H F + D+SH    +I E L  +M ++++ GY A 
Sbjct: 568 LRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVAD 627

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           TS VLHD+ EE K   L  HSE+LAVAFG+I+T   T+I+V KN+RIC DCH  IK ISK
Sbjct: 628 TSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISK 687

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +  REIIVRD  RFH F  G CSC DYW
Sbjct: 688 ITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 188/431 (43%), Gaps = 46/431 (10%)

Query: 1   MANLNALLQKCSSNGA--VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNEL 58
           M++  AL++    N     S    KQL A    T   QS      S +I  Y  + L  L
Sbjct: 1   MSSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRT---QSLSHTSASIVISIY--TNLKLL 55

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
             A  LF+ + +P    + +V+R     S  + A+  + +M       D       LK+C
Sbjct: 56  HEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSC 115

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV---GEIVSAKKVFDEMGVR--- 172
             ++ L     +H  ++R G   D   G  L+++YAK+   G  +S   VFDEM  R   
Sbjct: 116 TMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSN 175

Query: 173 ------------------------------DIASWNALIAGLAQGNLASEAVDLFKRMKM 202
                                         D+ S+N +IAG AQ  +  +A+ + + M  
Sbjct: 176 SGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGT 235

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
             + KP+  T+   L          +G +IH Y+  + +D +V + ++++DMYAK   ++
Sbjct: 236 TDL-KPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIE 294

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            +  VF  + CR   ++WN++V  +  +G    AL LF QM  A VKP  V++ + + AC
Sbjct: 295 DSERVFSRLYCRDG-ISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPAC 353

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
            H   +  G +L   +   G   N+    ++VD+  + G ++ A  I   +++  D V W
Sbjct: 354 AHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSW 412

Query: 383 QTLLGACQLYG 393
             ++    L+G
Sbjct: 413 TAIIMGHALHG 423



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 150/355 (42%), Gaps = 44/355 (12%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           +K   R+ +  +  Q+H+  +R   L+     + ++ +Y  +  +  A  +F  +    +
Sbjct: 12  IKNPTRIKSKSQAKQLHAQFIRTQSLSHTS-ASIVISIYTNLKLLHEALLLFKTLKSPPV 70

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            +W ++I      +L S+A+  F  M+  G   P+       L +C  +   + G+ +H 
Sbjct: 71  LAWKSVIRCFTDQSLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRFGESVHG 129

Query: 235 YIREERLDMNVVVCNAVIDMYAK-CGLLDK--AFEVFDNIKCRKSL-----VTWNTMVMA 286
           +I    +D ++   NA+++MYAK  G+  K     VFD +  R S      V   T +M 
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMP 189

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN 346
           F +  D  R   +FE M R     D VSY   +     +G+ +D +R+   M    +KP+
Sbjct: 190 FGI--DSVR--RVFEVMPRK----DVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVS---------MGTDMVLWQTLLGACQLYGDVEM 397
                SV+ +        E  D++K            + +D+ +  +L+        +E 
Sbjct: 242 SFTLSSVLPI------FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIED 295

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAY---ERWDDVGRVRKAMKNRDVKKVPG 449
           +E    +L       C D +  ++L A Y    R+++  R+ + M    VK  PG
Sbjct: 296 SERVFSRLY------CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVK--PG 342


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/595 (39%), Positives = 356/595 (59%), Gaps = 27/595 (4%)

Query: 5   NALLQ---KCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           N LLQ   +C     +  IH   L+   +T     + LF + S+I+ F   S L++L YA
Sbjct: 23  NLLLQHLNECKDMSQLKQIHALSLR---STLPNHSTTLF-LYSRILHF---SSLHDLNYA 75

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSK---PTNAVLWYRQML-RGSHRSDALTCSFALKA 117
           + +F Q++ P++  +N ++R  A S        A+L Y  ML R S   D  T  F LKA
Sbjct: 76  YRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKA 135

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA + ALFE  Q H+H+L+ GF +D  +  +L+  YA  G + SAK VFD+M  R + SW
Sbjct: 136 CAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSW 195

Query: 178 NALI-AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           NA+I A +  G    E          +  F+P+  T+   + AC  L A   G   H ++
Sbjct: 196 NAMIDAFVLFGEF--ETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFL 253

Query: 237 -REERLDM---NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            R   + +   +V+V N+++DMY KCG LD A ++F+ ++ +  + +WN+M++ FA+HG 
Sbjct: 254 LRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQ-KHDVTSWNSMILGFAMHGK 312

Query: 293 GPRALELFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHY 350
           G  ALE FE+M R +   P+ ++++  L ACNH  +V++G + F+ M N   ++P ++HY
Sbjct: 313 GELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHY 372

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC-QLYGDVEMAEIASRKLVEMG 409
           G +VD+L RAG + EA ++V S+ M  D+V+W++LL +C +    VE++E  +R+++E  
Sbjct: 373 GCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSENIARQILESE 432

Query: 410 -SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKS 468
            +++ G +VLLS +YA+  RW+DVG VRK M N  + K PG S IEV GV H+FF  D S
Sbjct: 433 EADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDTS 492

Query: 469 HVKWREIYEKLDEIMFKIKEYGYAAGTS-CVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
           H + +EIY+ L+ +  +I   GY    S   + D     K ++L  HSE+LA+A GL++ 
Sbjct: 493 HPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLRLHSERLAIALGLLNL 552

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
                I++FKNLR+C DCH V  LIS+++N EIIVRDRVRFH FKDG+CSC DYW
Sbjct: 553 KPGMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRDRVRFHHFKDGSCSCMDYW 607


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/502 (42%), Positives = 301/502 (59%), Gaps = 35/502 (6%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE----- 168
           AL AC+RVL +     +H   ++ G      L   L+ +Y+  GEIV A+++FD+     
Sbjct: 276 ALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELL 335

Query: 169 ---------------------------MGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
                                      M  +D+ SW+A+I+G AQ    SEA+ LF+ M+
Sbjct: 336 DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ 395

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           + GV +P+E  ++ A++AC HL     G  IH YI   +L +NV++   +IDMY KCG +
Sbjct: 396 LHGV-RPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCV 454

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           + A EVF  ++  K + TWN +++  A++G   ++L +F  M + G  P++++++  L A
Sbjct: 455 ENALEVFYAME-EKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGA 513

Query: 322 CNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C H GLV+DG   FNSM +   ++ N+KHYG +VDLLGRAG L+EA +++ S+ M  D+ 
Sbjct: 514 CRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVA 573

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
            W  LLGAC+ + D EM E   RKL+++  ++ G  VLLSN+YA+   W +V  +R  M 
Sbjct: 574 TWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMA 633

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
              V K PG S IE  G +H+F   DK+H +  +I   LD +  K+K  GY   TS V  
Sbjct: 634 QHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSL 693

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           DI EEEKE AL  HSEKLAVAFGLI+ S  T I+V KNLRIC DCH V+KLISK ++R+I
Sbjct: 694 DIDEEEKETALFRHSEKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDI 753

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           +VRDR RFH FK GACSC D+W
Sbjct: 754 VVRDRHRFHHFKHGACSCMDFW 775



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 183/403 (45%), Gaps = 50/403 (12%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSP-LNELA 59
           ++ L++LLQ C         H KQL +    TG          S++I F + S  L    
Sbjct: 3   VSTLDSLLQSCKCPR-----HFKQLLSQTILTGLITDPY--AASRLINFSSHSTTLVPFH 55

Query: 60  YAHALFRQINAPSTNDFNAVLRG-LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
           Y+  +F  +  P+T  +N ++R  L   + P  A+L Y+  L    + D+ T    L+ C
Sbjct: 56  YSLRIFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCC 115

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           A  ++ FE  Q+H+H +  GF  D  +  TL+++YA  G + SA++VF+E  V D+ SWN
Sbjct: 116 AARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWN 175

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
            L+AG  Q     EA  +F+ M                                      
Sbjct: 176 TLLAGYVQAGEVEEAERVFEGMP------------------------------------- 198

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRAL 297
              + N +  N++I ++ + G ++KA  +F+ ++ R + +V+W+ MV  +  +  G  AL
Sbjct: 199 ---ERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEAL 255

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
            LF +M  +GV  D+V  ++AL AC+    V+ G  +       GV+  +    +++ L 
Sbjct: 256 VLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLY 315

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
              G + +A  I        D++ W +++      G ++ AE+
Sbjct: 316 SSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEM 358



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 130/254 (51%), Gaps = 8/254 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF  +       ++A++ G A     + A+  +++M     R D      A+ AC  
Sbjct: 356 AEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTH 415

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L     IH+++ R+    + +L TTL+D+Y K G + +A +VF  M  + +++WNA+
Sbjct: 416 LATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAV 475

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK-IHEYIREE 239
           I GLA      +++++F  MK  G   PNE+T +G L AC H+G   +G    +  I E 
Sbjct: 476 ILGLAMNGSVEQSLNMFADMKKTGTV-PNEITFMGVLGACRHMGLVNDGRHYFNSMIHEH 534

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
           +++ N+     ++D+  + GLL +A E+ D++     + TW  ++ A   H D     E+
Sbjct: 535 KIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDN----EM 590

Query: 300 FEQMGRA--GVKPD 311
            E++GR    ++PD
Sbjct: 591 GERLGRKLIQLQPD 604


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/586 (35%), Positives = 347/586 (59%), Gaps = 16/586 (2%)

Query: 1   MANLNALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE 57
           M    ++L+ C+S G ++    IH + +++ +       + L  V +K            
Sbjct: 191 MYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKC---------GS 241

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
             YA  +F +I       + A++ G       +   + + QML      +  T    L++
Sbjct: 242 ANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRI-FNQMLAEGFNPNMYTFISILRS 300

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C+ +  +    Q+H+ ++++    +  +GT L+D+YAK   +  A+ +F+ +  RD+ +W
Sbjct: 301 CSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAW 360

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
             ++AG AQ     +AV  F +M+ EGV KPNE T+  +L+ C  +     G ++H    
Sbjct: 361 TVIVAGYAQDGQGEKAVKCFIQMQREGV-KPNEFTLASSLSGCSRIATLDSGRQLHSMAI 419

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +     ++ V +A++DMYAKCG ++ A  VFD +  R + V+WNT++  ++ HG G +AL
Sbjct: 420 KAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT-VSWNTIICGYSQHGQGGKAL 478

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDL 356
           + FE M   G  PD+V+++  L AC+H GL+++G + FNS++   G+ P ++HY  +VD+
Sbjct: 479 KAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDI 538

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           LGRAG+  E    ++ + + +++++W+T+LGAC+++G++E  E A+ KL E+      ++
Sbjct: 539 LGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNY 598

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           +LLSN++AA   WDDV  VR  M  R VKK PG S++EV G +H F + D SH K REI+
Sbjct: 599 ILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIH 658

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
            KL ++  K+   GY   T  VLH++ + EK+  L YHSE+LA+AF L+STS   +I++F
Sbjct: 659 LKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIF 718

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLRIC DCHD +K IS++ N+E++VRD   FH FK+G+CSC+++W
Sbjct: 719 KNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 160/334 (47%), Gaps = 4/334 (1%)

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N +L G   +           Q+L      +  T    LK CA    L E   IH  V++
Sbjct: 160 NNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIK 219

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G   D+ L  +L++VYAK G    A KVF E+  RD+ SW ALI G       S  + +
Sbjct: 220 SGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGS-GLRI 278

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           F +M  EG F PN  T +  L +C  L     G ++H  I +  LD N  V  A++DMYA
Sbjct: 279 FNQMLAEG-FNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYA 337

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           K   L+ A  +F+ +  ++ L  W  +V  +A  G G +A++ F QM R GVKP++ +  
Sbjct: 338 KNRFLEDAETIFNRL-IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLA 396

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
           ++L  C+    +D G +L +     G   +M    ++VD+  + G +++A ++V    + 
Sbjct: 397 SSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA-EVVFDGLVS 455

Query: 377 TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
            D V W T++     +G    A  A   +++ G+
Sbjct: 456 RDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 489



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 139/295 (47%), Gaps = 9/295 (3%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           IH+ V ++GF +D L+    + +Y K   + +  + F  M + ++AS N L++G      
Sbjct: 112 IHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTET 171

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             +   +  ++ +EG F+PN  T +  L  C   G   EG  IH  + +  ++ +  + N
Sbjct: 172 CDQGPRILIQLLVEG-FEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWN 230

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           +++++YAKCG  + A +VF  I   + +V+W  ++  F   G G   L +F QM   G  
Sbjct: 231 SLVNVYAKCGSANYACKVFGEIP-ERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFN 288

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           P+  ++++ L +C+    VD G ++   +    +  N     ++VD+  +   L++A  I
Sbjct: 289 PNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETI 348

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC--GDFVLLSNL 422
              + +  D+  W  ++     Y      E A +  ++M        +F L S+L
Sbjct: 349 FNRL-IKRDLFAWTVIVAG---YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSL 399



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 124/256 (48%), Gaps = 9/256 (3%)

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           V+++G   D+ L ++L++VY K   +  A++V +EM ++D+  WN  ++         EA
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253
           V LF  M+   + + N+      ++A   LG    G+ IH  + +   + ++++ NA + 
Sbjct: 75  VQLFYLMRHTRI-RLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVT 133

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA---VHGDGPRALELFEQMGRAGVKP 310
           MY K   ++  ++ F  +   ++L + N ++  F        GPR L    Q+   G +P
Sbjct: 134 MYMKTQSVENGWQFFKAMMI-ENLASRNNLLSGFCDTETCDQGPRIL---IQLLVEGFEP 189

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           +  ++++ L  C   G +++G  +   +   G+ P+   + S+V++  + G    AC + 
Sbjct: 190 NMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVF 249

Query: 371 KSVSMGTDMVLWQTLL 386
             +    D+V W  L+
Sbjct: 250 GEIP-ERDVVSWTALI 264


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/578 (37%), Positives = 339/578 (58%), Gaps = 10/578 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL+ C S  A+     KQL A L   G   +    + +K++ FY++   N L  AH LF
Sbjct: 63  SLLESCISAKALEPG--KQLHARLCQLGIAYN--LDLATKLVNFYSVC--NSLRNAHHLF 116

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            +I   +   +N ++R  A +     A+  Y QML    + D  T  F LKAC+ +  + 
Sbjct: 117 DKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIG 176

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E   IH  V+R G+  D  +G  L+D+YAK G +V A+ VFD++  RD   WN+++A  A
Sbjct: 177 EGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYA 236

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q     E++ L   M  +GV +P E T++  +++   +     G +IH +        N 
Sbjct: 237 QNGHPDESLSLCCEMAAKGV-RPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYND 295

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V  A+IDMYAKCG +  A  +F+ ++  K +V+WN ++  +A+HG    AL+LFE+M +
Sbjct: 296 KVKTALIDMYAKCGSVKVACVLFERLR-EKRVVSWNAIITGYAMHGLAVEALDLFERMMK 354

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQ 364
              +PD ++++ AL AC+   L+D+G  L+N M  +C + P ++HY  +VDLLG  G+L 
Sbjct: 355 EA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLD 413

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           EA D+++ + +  D  +W  LL +C+ +G+VE+AE+A  KL+E+  ++ G++V+L+N+YA
Sbjct: 414 EAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYA 473

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
              +W+ V R+R+ M ++ +KK    S+IEV   ++ F + D SH     IY +L  +  
Sbjct: 474 QSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEG 533

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
            ++E GY   T  V HD+ E+EK + +C HSE+LA+AFGLIST   T + + KNLRIC D
Sbjct: 534 LMREAGYVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICED 593

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH  IK ISK+  REI VRD  R+H F+ G CSC DYW
Sbjct: 594 CHVAIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/508 (38%), Positives = 319/508 (62%), Gaps = 3/508 (0%)

Query: 76   FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
            +NA+L G   +      +  + QML      +  T    L++C+ +  +    Q+H+ ++
Sbjct: 500  WNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIV 559

Query: 136  RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
            ++    +  +GT L+D+YAK   +  A+ +F+ +  RD+ +W  ++AG AQ     +AV 
Sbjct: 560  KNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVK 619

Query: 196  LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
             F +M+ EGV KPNE T+  +L+ C  +     G ++H    +     ++ V +A++DMY
Sbjct: 620  CFIQMQREGV-KPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMY 678

Query: 256  AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            AKCG ++ A  VFD +  R + V+WNT++  ++ HG G +AL+ FE M   G  PD+V++
Sbjct: 679  AKCGCVEDAEVVFDGLVSRDT-VSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTF 737

Query: 316  LAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            +  L AC+H GL+++G + FNS++   G+ P ++HY  +VD+LGRAG+  E    ++ + 
Sbjct: 738  IGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMK 797

Query: 375  MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
            + +++++W+T+LGAC+++G++E  E A+ KL E+      +++LLSN++AA   WDDV  
Sbjct: 798  LTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTN 857

Query: 435  VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
            VR  M  R VKK PG S++EV G +H F + D SH K REI+ KL ++  K+   GY   
Sbjct: 858  VRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPN 917

Query: 495  TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
            T  VLH++ + EK+  L YHSE+LA+AF L+STS   +I++FKNLRIC DCHD +K IS+
Sbjct: 918  TDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISE 977

Query: 555  VYNREIIVRDRVRFHRFKDGACSCKDYW 582
            + N+E++VRD   FH FK+G+CSC+++W
Sbjct: 978  ITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 169/350 (48%), Gaps = 3/350 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F +I  P    ++A++  L    +   A   +++M       +  T +  + A   
Sbjct: 384 ALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATD 443

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L+    IH+ V ++GF  D  +   L+ +Y K+G +    +VF+    RD+ SWNAL
Sbjct: 444 LGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNAL 503

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           ++G          + +F +M  EG F PN  T +  L +C  L     G ++H  I +  
Sbjct: 504 LSGFHDNETCDTGLRIFNQMLAEG-FNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNS 562

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           LD N  V  A++DMYAK   L+ A  +F+ +  ++ L  W  +V  +A  G G +A++ F
Sbjct: 563 LDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAGYAQDGQGEKAVKCF 621

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            QM R GVKP++ +  ++L  C+    +D G +L +     G   +M    ++VD+  + 
Sbjct: 622 IQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKC 681

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
           G +++A ++V    +  D V W T++     +G    A  A   +++ G+
Sbjct: 682 GCVEDA-EVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 730



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 192/407 (47%), Gaps = 18/407 (4%)

Query: 5   NALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           + +L+ C+S G ++    IH + +++ +       + L  V +K              YA
Sbjct: 132 SGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKC---------GSANYA 182

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             +F +I       + A++ G       + AV  + +M R    ++  T + ALKAC+  
Sbjct: 183 CKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMC 242

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
           L L    Q+H+  ++ G  +D  +G+ L+D+YAK GE+V A++VF  M  ++  SWNAL+
Sbjct: 243 LDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALL 302

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            G AQ   A + ++LF RM    +   ++ T+   L  C + G  + G  +H        
Sbjct: 303 NGFAQMGDAEKVLNLFCRMTGSEI-NFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGC 361

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           +++  +   ++DMY+KCGL   A +VF  I+    +V+W+ ++      G    A E+F+
Sbjct: 362 ELDEFISCCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAIITCLDQKGQSREAAEVFK 420

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           +M  +GV P+  +  + + A    G +  G  +   +   G + +     ++V +  + G
Sbjct: 421 RMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIG 480

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
            +Q+ C + ++ +   D++ W  LL     + D E  +   R   +M
Sbjct: 481 SVQDGCRVFEATT-NRDLISWNALLSG---FHDNETCDTGLRIFNQM 523



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 168/351 (47%), Gaps = 21/351 (5%)

Query: 1   MANLNALLQKCSSNGAVSHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA 59
           M    ++L+ CSS   +S + + KQ+ A +       +    V + +++ YA +    L 
Sbjct: 532 MYTFISILRSCSS---LSDVDLGKQVHAQIVKNSLDGNDF--VGTALVDMYAKNRF--LE 584

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
            A  +F ++       +  ++ G A   +   AV  + QM R   + +  T + +L  C+
Sbjct: 585 DAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCS 644

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           R+  L    Q+HS  ++ G   D  + + L+D+YAK G +  A+ VFD +  RD  SWN 
Sbjct: 645 RIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNT 704

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK-IHEYIRE 238
           +I G +Q     +A+  F+ M  EG   P+EVT +G L+AC H+G  +EG K  +   + 
Sbjct: 705 IICGYSQHGQGGKALKAFEAMLDEGTV-PDEVTFIGVLSACSHMGLIEEGKKHFNSLSKI 763

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD---GPR 295
             +   +     ++D+  + G   +     + +K   +++ W T++ A  +HG+   G R
Sbjct: 764 YGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGER 823

Query: 296 -ALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
            A++LFE      ++P+ D +Y+         G+ DD   +   M+  GVK
Sbjct: 824 AAMKLFE------LEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVK 868


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/568 (37%), Positives = 338/568 (59%), Gaps = 14/568 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALS-PLNELAYAHALFRQINAPSTNDFNAV 79
            ++Q+ AHL  T   +S     RS + +   L+     +AY H LF  +  P    FN+V
Sbjct: 24  QLQQVHAHLIVTSYGRS-----RSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSV 78

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           ++  +    P + V +YR+ML  +      T +  +K+CA + AL     +H H +  GF
Sbjct: 79  IKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGF 138

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
             D  +   L+  Y+K G++ +A++VFD M  + + +WN+L++G  Q  LA +A+ +F +
Sbjct: 139 GLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQ 198

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+  G F+P+  T +  L+AC   GA   G  +H+YI  E LD+NV +  A+I++Y++CG
Sbjct: 199 MRESG-FEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCG 257

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAA 318
            + KA EVFD +K   ++  W  M+ A+  HG G +A++LF +M    G  P++V+++A 
Sbjct: 258 DVGKAREVFDKMK-ETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAV 316

Query: 319 LCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM-- 375
           L AC HAGLV+DG  ++  M     + P ++H+  +VD+LGRAG L EA   ++ +    
Sbjct: 317 LSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATG 376

Query: 376 -GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
             T   LW  +LGAC+++ + ++    +++L+ +   N G  V+LSN+YA   + D+V  
Sbjct: 377 NATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSH 436

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R  M   +++K  G+S IEV    + F   D+SH +  EIY  L+ ++ + KE GYA  
Sbjct: 437 IRDRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGYAPV 496

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           +  V+H + EEEKE AL YHSEKLAVAFGL+ T + ++I V KNLRIC DCH   K IS 
Sbjct: 497 SEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-SAITVVKNLRICEDCHSAFKYISI 555

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V NR+IIVRD++RFH F++G+CSC DYW
Sbjct: 556 VSNRQIIVRDKLRFHHFQNGSCSCLDYW 583


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/485 (41%), Positives = 311/485 (64%), Gaps = 8/485 (1%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           MLR   R +  T S  L+AC     LF   Q+H  +++ G  +D  + + L+DVY++ GE
Sbjct: 57  MLREGVRPNMFTYSSVLRACD---GLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGE 113

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           + +A +VFDEM   D+  W+++IAG AQ +   EA+ LFKRMK  G F   + T+   L 
Sbjct: 114 LENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAG-FLAQQTTLTSVLR 172

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC  L   + G ++H ++   + D ++++ NA++DMY KCG L+ A  VF  +   K ++
Sbjct: 173 ACTGLALLELGRQVHVHVL--KYDQDLILNNALLDMYCKCGSLEDANAVFVRM-VEKDVI 229

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W+TM+   A +G    AL+LFE M   G+KP+ V+ +  L AC+HAGLV++G+  F+SM
Sbjct: 230 SWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSM 289

Query: 339 ANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
               G+ P  +HYG ++DLLGRAGRL EA D++  +    D V W+ LL AC+++ +V++
Sbjct: 290 KELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDV 349

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
           A  A+++++ +   + G +VLLSN+YA  +RW+DV  VR+ M NR +KK PG S+IEV  
Sbjct: 350 AIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSK 409

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            IH F   D+SH + REI  +L+++++K+   GY   T+ VL D+  E+ +++L YHSEK
Sbjct: 410 QIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEK 469

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LA+ FGL+S     +I++ KNLRIC DCH   KL++K+  R I++RD VR+H F+DG CS
Sbjct: 470 LAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCS 529

Query: 578 CKDYW 582
           C D+W
Sbjct: 530 CGDFW 534



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 165/326 (50%), Gaps = 11/326 (3%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           +++QL   +   G   S +F VRS +I+ Y  S   EL  A  +F ++       +++++
Sbjct: 81  NLRQLHCCIIKIG-LDSDVF-VRSALIDVY--SRWGELENALRVFDEMVTGDLVVWSSII 136

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
            G A +S    A+  +++M R    +   T +  L+AC  +  L    Q+H HVL++   
Sbjct: 137 AGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYD-- 194

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
            D +L   LLD+Y K G +  A  VF  M  +D+ SW+ +IAGLAQ   + EA+ LF+ M
Sbjct: 195 QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESM 254

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCG 259
           K+ G+ KPN VT++G L AC H G  +EG      ++E   +D        +ID+  + G
Sbjct: 255 KVLGI-KPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAG 313

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV-SYLAA 318
            L +A ++ + ++C    VTW  ++ A  VH +   A+   +Q+ R  + P D  +Y+  
Sbjct: 314 RLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILR--LDPQDAGTYVLL 371

Query: 319 LCACNHAGLVDDGVRLFNSMANCGVK 344
                +    +D   +  +M N G+K
Sbjct: 372 SNIYANTQRWNDVAEVRRTMTNRGIK 397



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 128/246 (52%), Gaps = 10/246 (4%)

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            L   L+++Y K G +  A+ VFD+M  R++ SW  +I+  +   L  +A++    M  E
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           GV +PN  T    L AC  L   ++   +H  I +  LD +V V +A+ID+Y++ G L+ 
Sbjct: 61  GV-RPNMFTYSSVLRACDGLFNLRQ---LHCCIIKIGLDSDVFVRSALIDVYSRWGELEN 116

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A  VFD +     LV W++++  FA + DG  AL LF++M RAG      +  + L AC 
Sbjct: 117 ALRVFDEM-VTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACT 175

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI-VKSVSMGTDMVLW 382
              L++ G ++   +       ++    +++D+  + G L++A  + V+ V    D++ W
Sbjct: 176 GLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVE--KDVISW 231

Query: 383 QTLLGA 388
            T++  
Sbjct: 232 STMIAG 237



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 58/227 (25%)

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N +I+MY K GLL  A +VFD +  R ++V+W TM+ A++      +ALE    M R   
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDR-NVVSWTTMISAYSAAKLNDKALEFLVLMLRE-- 60

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL-GRAGRLQEAC 367
                                            GV+PNM  Y SV+    G     Q  C
Sbjct: 61  ---------------------------------GVRPNMFTYSSVLRACDGLFNLRQLHC 87

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
            I+K + + +D+ +   L+     +G++E    A R   EM +   GD V+ S++ A + 
Sbjct: 88  CIIK-IGLDSDVFVRSALIDVYSRWGELEN---ALRVFDEMVT---GDLVVWSSIIAGFA 140

Query: 428 R---WDDVGRVRKAMKNRD-----------VKKVPGFSYIEVGGVIH 460
           +    D+  R+ K MK              ++   G + +E+G  +H
Sbjct: 141 QNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVH 187


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/548 (37%), Positives = 334/548 (60%), Gaps = 5/548 (0%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F+S +F V++ ++  YA     E+  A+A+F ++   +   + +++ G A + +P  A+ 
Sbjct: 204 FESDVF-VQNGLVALYA--KCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALR 260

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
            + +M + + R D +     L+A   V  L     IH  V++ G   +  L  +L  +YA
Sbjct: 261 IFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYA 320

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G ++ A+  F+++    +  WNA+I+G  +   A EA++LF+ MK + + +P+ +TV 
Sbjct: 321 KCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNI-RPDSITVT 379

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
            ++AAC  +G+ +    + EYI       +V+V  ++ID YAKCG +D A  VFD I   
Sbjct: 380 SSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIP-D 438

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           K +V W+ M++ + +HG G  ++ LF  M +AGV P+DV+++  L AC ++GLV++G  L
Sbjct: 439 KDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDL 498

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           F+ M + G++P  +HY  VVDLLGRAG L  A + V ++ +   + +W  LL AC+++  
Sbjct: 499 FHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRH 558

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           V + E A+ +L  +   N G +V LSNLYA+   WD V +VR  M+ + + K  G+S IE
Sbjct: 559 VTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIE 618

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYH 514
           + G +  F   DK+H + +EI+E+++++  ++KE G+   T  VLHD+  EE E  LC H
Sbjct: 619 INGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCNH 678

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SE+LA+A+GLIST   T++++ KNLR C +CH  IKLISK+ +REI+VRD  RFH FKDG
Sbjct: 679 SERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDG 738

Query: 575 ACSCKDYW 582
           ACSC DYW
Sbjct: 739 ACSCGDYW 746



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 200/429 (46%), Gaps = 14/429 (3%)

Query: 14  NGAVSHIHIKQLQAHLTTTG-QFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPS 72
           + ++   H+ Q+ A L  TG Q+   L    +K++     S + E++ A  LF +   P 
Sbjct: 83  DDSIHKTHLNQIYAKLLVTGLQYGGFLI---AKLVN--KASNIGEVSCARKLFDKFPDPD 137

Query: 73  TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS 132
              +NA++R  +      +A+  Y +M       D  +    LKAC+ + AL    ++H 
Sbjct: 138 VFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHG 197

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
            + RHGF +D  +   L+ +YAK GEIV A  VF  +  R I SW ++I+G AQ     E
Sbjct: 198 QIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIE 257

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A+ +F  M+   V +P+ + ++  L A   +   + G  IH  + +  L+    +  ++ 
Sbjct: 258 ALRIFSEMRKTNV-RPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLT 316

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
            +YAKCG +  A   F+ ++   SL+ WN M+  +  +G    A+ELF  M    ++PD 
Sbjct: 317 SLYAKCGHVMVARLFFNQVE-NPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDS 375

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
           ++  +++ AC   G ++    +   ++    + ++    S++D   + G +  A  +   
Sbjct: 376 ITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDR 435

Query: 373 VSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG-SNNCGDFVLL----SNLYAAYE 427
           +    D+V+W  ++    L+G    + I    + + G S N   FV L     N     E
Sbjct: 436 IP-DKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEE 494

Query: 428 RWDDVGRVR 436
            WD   R+R
Sbjct: 495 GWDLFHRMR 503


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/579 (36%), Positives = 341/579 (58%), Gaps = 12/579 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQ-LQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           LL+ CS    +SH+ + + + A +   G F + +F V++ +I  YA      L  A  +F
Sbjct: 125 LLKACS---GLSHLQMGRFVHAQVFRLG-FDADVF-VQNGLIALYA--KCRRLGSARTVF 177

Query: 66  RQINAPSTN--DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
             +  P      + A++   A + +P  A+  + QM +   + D +     L A   +  
Sbjct: 178 EGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQD 237

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L +   IH+ V++ G   +  L  +L  +YAK G++ +AK +FD+M   ++  WNA+I+G
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            A+   A EA+D+F  M  + V +P+ +++  A++AC  +G+ ++   ++EY+       
Sbjct: 298 YAKNGYAREAIDMFHEMINKDV-RPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRD 356

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           +V + +A+IDM+AKCG ++ A  VFD    R  +V W+ M++ + +HG    A+ L+  M
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDR-DVVVWSAMIVGYGLHGRAREAISLYRAM 415

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
            R GV P+DV++L  L ACNH+G+V +G   FN MA+  + P  +HY  V+DLLGRAG L
Sbjct: 416 ERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHL 475

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            +A +++K + +   + +W  LL AC+ +  VE+ E A+++L  +  +N G +V LSNLY
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLY 535

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           AA   WD V  VR  MK + + K  G S++EV G +  F   DKSH ++ EI  +++ I 
Sbjct: 536 AAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIE 595

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            ++KE G+ A     LHD+ +EE E  LC HSE++A+A+GLIST + T +++ KNLR C 
Sbjct: 596 SRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACV 655

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +CH   KLISK+ +REI+VRD  RFH FKDG CSC DYW
Sbjct: 656 NCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 206/414 (49%), Gaps = 12/414 (2%)

Query: 14  NGAVSHIHIKQLQAHLTTTG-QFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPS 72
           + A     +KQ+ A L   G QF   L    +K+I  +A S   ++ +A  +F  +  P 
Sbjct: 29  DSATHKAQLKQIHARLLVLGLQFSGFLI---TKLI--HASSSFGDITFARQVFDDLPRPQ 83

Query: 73  TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS 132
              +NA++RG + ++   +A+L Y  M       D+ T    LKAC+ +  L     +H+
Sbjct: 84  IFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHA 143

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGLAQGNLA 190
            V R GF AD  +   L+ +YAK   + SA+ VF+ + +  R I SW A+++  AQ    
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
            EA+++F +M+   V KP+ V ++  L A   L   K+G  IH  + +  L++   +  +
Sbjct: 204 MEALEIFSQMRKMDV-KPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           +  MYAKCG +  A  +FD +K   +L+ WN M+  +A +G    A+++F +M    V+P
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKS-PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           D +S  +A+ AC   G ++    ++  +     + ++    +++D+  + G + E   +V
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV-EGARLV 380

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
              ++  D+V+W  ++    L+G    A I+  + +E G  +  D   L  L A
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREA-ISLYRAMERGGVHPNDVTFLGLLMA 433


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/601 (34%), Positives = 355/601 (59%), Gaps = 31/601 (5%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE-LAYAHAL 64
           ++L KC S   +  IH + ++ +L    QF        S++I F +LS ++  L YA ++
Sbjct: 11  SVLDKCKSLCELRQIHAQMIKTNLLNH-QFTV------SRLIAFCSLSGVSGGLDYASSV 63

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA--LKACARVL 122
           F +I  P++  F A+++G + +S P  +++ Y +ML   + S  +  S    LKAC ++L
Sbjct: 64  FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLL 123

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           A  E  Q+H  VL+     D  +G +++ +Y   GEI  A++VFD M  RD+ SWN++IA
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIA 183

Query: 183 GLAQGNLASEAVDLFKRMKMEGV------------------FKPNEVTVLGALAACGHLG 224
           G  +      A +LF  M    +                   +P+   ++  L+A   LG
Sbjct: 184 GYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLG 243

Query: 225 AWKEGDKIHEYIREERLDMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
             +EG  +H Y+   +++++   + +A+IDMY+KCG ++ A+ VF +I  R+++  WN+M
Sbjct: 244 FVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSM 303

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCG 342
           +   A+HG    AL++F +M R  ++P+++++L  L  C+H GLV++G   F SM     
Sbjct: 304 ISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYK 363

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           + P ++HYG ++DL GRAGRL++A  +++++    D++ W+ +L A   +G +E+ + A+
Sbjct: 364 IVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAA 423

Query: 403 RKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKF 462
            + +E+  ++   +VLLSN+YA   RWDDV ++R  M+ R VKK+ G S + V G +H+F
Sbjct: 424 LRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEF 483

Query: 463 FTSDKSHVKWR-EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVA 521
               +    +  ++  K+ E++ ++K  GY    + VL DI +E KE+ L  HSEK+A+A
Sbjct: 484 LLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIA 543

Query: 522 FGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDY 581
           FGLI  +++  I + KNLR+C DCH  +KL+SKVYNR+II+RD+ RFH F++G CSC +Y
Sbjct: 544 FGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEY 603

Query: 582 W 582
           W
Sbjct: 604 W 604


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/508 (40%), Positives = 305/508 (60%), Gaps = 4/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++ ++ G   + +P  A+  Y +M       D +     ++AC           +H   L
Sbjct: 180 WSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFL 239

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           RHG   D ++ T+L+D+YAK G    A++VF  M  R+  SWNALI+G AQ   A EA+D
Sbjct: 240 RHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALD 299

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF+ M   G+ +P+   ++ AL AC  +G  K G  IH +I   RL+   ++  AV+DMY
Sbjct: 300 LFREMSTSGL-QPDSGALVSALLACADVGFLKLGKSIHGFILR-RLEFQCILGTAVLDMY 357

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCG L+ A ++F+ +  R  LV WN M+     HG G  AL LF+++   G+KPD  ++
Sbjct: 358 SKCGSLESARKLFNKLSSR-DLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATF 416

Query: 316 LAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            + L A +H+GLV++G   F+ M    G++P  KH   VVDLL R+G ++EA +++ S+ 
Sbjct: 417 ASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMH 476

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
               + +W  LL  C     +E+ E  ++K++E    + G   L+SNLYAA ++WD V  
Sbjct: 477 TEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVRE 536

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +RK MK+   KKVPG+S IEV G  H F   D+SH + +EI + + ++ F++++ GY   
Sbjct: 537 IRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPR 596

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T  V HD+ E+ KE  L YHSE+LA+AFGL++TS  T + + KNLR+C DCHD IK ISK
Sbjct: 597 TEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISK 656

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +REI+VRD  RFH FKDGACSC DYW
Sbjct: 657 IVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 163/325 (50%), Gaps = 19/325 (5%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA+L   + +  P  A+  +R  L  S R D+ T + AL ACAR+  L     +     
Sbjct: 80  WNALLAARSRAGSPGAALRVFRA-LPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAF 138

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             G+  D  + + LL VY++ G +  A +VFD M  +D  +W+ ++AG        EA+ 
Sbjct: 139 AAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALG 198

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           ++ RM+  GV + +EV ++G + AC   G  + G  +H       + M+VV+  +++DMY
Sbjct: 199 MYSRMREHGVAE-DEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMY 257

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AK G  D A +VF  +  R + V+WN ++  FA +G    AL+LF +M  +G++PD  + 
Sbjct: 258 AKNGHFDVARQVFRMMPYRNA-VSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGAL 316

Query: 316 LAALCACNHAGLVDDG-------VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           ++AL AC   G +  G       +R        G         +V+D+  + G L+ A  
Sbjct: 317 VSALLACADVGFLKLGKSIHGFILRRLEFQCILGT--------AVLDMYSKCGSLESARK 368

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYG 393
           +   +S   D+VLW  ++  C  +G
Sbjct: 369 LFNKLS-SRDLVLWNAMIACCGTHG 392



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 137/279 (49%), Gaps = 11/279 (3%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           + + +++ YA +       A  +FR +   +   +NA++ G A +     A+  +R+M  
Sbjct: 249 IATSLVDMYAKN--GHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMST 306

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              + D+     AL ACA V  L     IH  +LR       +LGT +LD+Y+K G + S
Sbjct: 307 SGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LEFQCILGTAVLDMYSKCGSLES 365

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+K+F+++  RD+  WNA+IA         +A+ LF+ +   G+ KP+  T    L+A  
Sbjct: 366 ARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGI-KPDHATFASLLSALS 424

Query: 222 HLGAWKEGDK-IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
           H G  +EG       I E  ++     C  V+D+ A+ GL+++A E+  ++    ++  W
Sbjct: 425 HSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIW 484

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGV--KPDDVSYLA 317
             ++     +    + LEL E + +  +  +P+D+  LA
Sbjct: 485 VALLSGCLNN----KKLELGETIAKKILESQPEDIGVLA 519



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 109/244 (44%), Gaps = 6/244 (2%)

Query: 145 LGTTLLDVYAKVGEIVSAKKVF--DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
           L  +L   YA+VG + +A+            I +WNAL+A  ++      A+ +F+ +  
Sbjct: 46  LFPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPS 105

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
               +P+  T   AL AC  LG     + +           +V VC+A++ +Y++CG + 
Sbjct: 106 SA--RPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMG 163

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VFD +  RK  V W+TMV  F   G    AL ++ +M   GV  D+V  +  + AC
Sbjct: 164 DAIRVFDGMP-RKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQAC 222

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
              G    G  +       G++ ++    S+VD+  + G    A  + + +    + V W
Sbjct: 223 TLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPY-RNAVSW 281

Query: 383 QTLL 386
             L+
Sbjct: 282 NALI 285


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/581 (37%), Positives = 337/581 (58%), Gaps = 11/581 (1%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           +ALL  C    A+     +++ AH+  T    +    +R++++ FY     + L  A  +
Sbjct: 56  DALLNACLDKRALRDG--QRVHAHMIKTRYLPATY--LRTRLLIFYG--KCDCLEDARKV 109

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
             ++   +   + A++   + +   + A+  + +M+R   + +  T +  L +C R   L
Sbjct: 110 LDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGL 169

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               QIH  +++  + +   +G++LLD+YAK G+I  A+++F+ +  RD+ S  A+IAG 
Sbjct: 170 GLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGY 229

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           AQ  L  EA+++F R+  EG+  PN VT    L A   L     G + H ++    L   
Sbjct: 230 AQLGLDEEALEMFHRLHSEGM-SPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFY 288

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM- 303
            V+ N++IDMY+KCG L  A  +FDN+  R + ++WN M++ ++ HG G   LELF  M 
Sbjct: 289 AVLQNSLIDMYSKCGNLSYARRLFDNMPERTA-ISWNAMLVGYSKHGLGREVLELFRLMR 347

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM--ANCGVKPNMKHYGSVVDLLGRAG 361
               VKPD V+ LA L  C+H  + D G+ +F+ M     G KP  +HYG +VD+LGRAG
Sbjct: 348 DEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAG 407

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           R+ EA + +K +       +  +LLGAC+++  V++ E   R+L+E+   N G++V+LSN
Sbjct: 408 RIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSN 467

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           LYA+  RW DV  VR  M  + V K PG S+I+    +H F  +D++H +  E+  K+ E
Sbjct: 468 LYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKE 527

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           I  K+K+ GY    SCVL+D+ EE+KE  L  HSEKLA+ FGLI+T E   I+VFKNLRI
Sbjct: 528 ISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRI 587

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH+  K+ SKV+ RE+ +RD+ RFH+  DG CSC DYW
Sbjct: 588 CVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628


>gi|357137130|ref|XP_003570154.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Brachypodium distachyon]
          Length = 622

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/532 (39%), Positives = 324/532 (60%), Gaps = 9/532 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           + YA A+F  ++ P   D+N ++RG      P  A+  Y  ML      D  T  F LKA
Sbjct: 93  MEYAAAIFAALDEPEAFDYNTLMRGHVAHDDPAAALRLYAAMLEQGVEPDRYTFPFVLKA 152

Query: 118 CARVLALFETLQIHSHVLRHGFLA-DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           CAR+ A  +  Q+H HV + GF   D  +G +L+  Y + GE   A++ F++M   +  +
Sbjct: 153 CARLAASGQGRQLHGHVAKLGFSQHDEHVGNSLISFYGRCGEPELARRAFEQMEAEESTT 212

Query: 177 WNALIAG---LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
             +  A      +  L ++ +D F  M   G  +P E +++ AL+AC HLGA+  G  IH
Sbjct: 213 AASWSALLAAYTRAGLWADCLDSFGAMARAG-GRPEESSMVSALSACAHLGAYDVGRSIH 271

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
             +    + +N  +  +++DMYAKCG +DKA  VFD +   K+  T++ MV   A+HGDG
Sbjct: 272 CALLRNTVALNTFMETSLVDMYAKCGCIDKASAVFDAMDG-KNEWTYSAMVSGLALHGDG 330

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGS 352
            +AL++F+ M R G KPD+  Y+  L AC+ +GL+++G+R F+ M     V PN +HYG 
Sbjct: 331 LKALQVFDAMAREGHKPDEAVYVGILNACSRSGLLEEGLRCFDRMRLEHKVAPNAQHYGC 390

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           +VDL+ RAGRL +A  ++ S+  G     W++LL AC+++G+VE+AE A + L  +G+ N
Sbjct: 391 MVDLMARAGRLDDARALIGSMPTGPTDAAWRSLLNACRIHGNVELAERALQGLSGIGAVN 450

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW 472
            GD+V+L++++A  + WD    +R    NR + + PGFS +EV G  H+F + D+SH + 
Sbjct: 451 AGDYVILADMHARTKNWDAAAALRTEAANRGLAQAPGFSAVEVHGRAHRFASQDRSHPRT 510

Query: 473 REIYEKLDEIMFKIKEYGYAAGTS--CVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
            EIYE L ++ ++++  GY   TS   +  D GEEEK  A+  HS+KLA+AFGL+ST E 
Sbjct: 511 AEIYEMLHQMEWQLRFEGYEPDTSEVALTRDAGEEEKRRAVAAHSQKLAMAFGLLSTPEG 570

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           T ++V  NLR+ ++CH    LIS+++ RE++VRDR RFHRF+ GACSC++YW
Sbjct: 571 TPVRVVTNLRMSKECHAYSALISEIFGREVVVRDRNRFHRFRRGACSCRNYW 622


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/468 (41%), Positives = 291/468 (62%), Gaps = 12/468 (2%)

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE----IVSAKKVFDEMGVRDIA 175
           + L LF  +Q        GFL D +   ++     ++G+    I  A+ VFD M  R+  
Sbjct: 216 KALMLFRKMQ------EEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGI 269

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           SWN++++G  Q    ++A+ LF +M+      PN VT L  ++AC +LG+   G K+H +
Sbjct: 270 SWNSMLSGYTQNGRPTDALSLFNQMQASEC-DPNPVTALIMVSACSYLGSKHLGRKLHNF 328

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC-RKSLVTWNTMVMAFAVHGDGP 294
           +   ++D++  + NA++DMY KCG LD A E+F+N +   + + +WN ++  + VHG G 
Sbjct: 329 VISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGK 388

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            ALELF +M   GV+P+D+++ + L AC+HAGL+D+G + F  M    V+P MKHY  +V
Sbjct: 389 EALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMV 448

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           D+LGRAG L EA  ++K +       +W  LL AC+++G+ E+ EIA+  L ++   + G
Sbjct: 449 DMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTG 508

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
            +VL+SN+YAA  +W +V  VR+ MK+R +KK   FS IE G  +H F T+D+S   +RE
Sbjct: 509 YYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYRE 568

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           +Y K++ +  ++K  GY    SCVLHD+  E+KE+ L YHSEKLAVAFG++   +   IQ
Sbjct: 569 VYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQ 628

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V KNLR+C DCH   K IS +Y R+IIVRD  RFH F+ G CSC DYW
Sbjct: 629 VTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 183/404 (45%), Gaps = 37/404 (9%)

Query: 7   LLQKCSSNGAVSHIHIK-QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           LLQ C+S   +  IH     +  L  T  F ++L  + SK+ + ++   L +  +     
Sbjct: 31  LLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHH-HHH 89

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
               AP++   N +LR  A++ +   A+  Y  M R     +  T  F LK CA  L   
Sbjct: 90  GHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV 149

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
               +H  V+R GF +D  +   L+D+YAK GEI  A +VFD M +RD+  W A+I    
Sbjct: 150 FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYE 209

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q     +A+ LF++M+ EG F  +E+T +   +A G LG  +                  
Sbjct: 210 QAERPLKALMLFRKMQEEG-FLGDEITAISVASAVGQLGDGRMA---------------- 252

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
                          + +A  VFD ++ R   ++WN+M+  +  +G    AL LF QM  
Sbjct: 253 ---------------ISRARLVFDRMEERNG-ISWNSMLSGYTQNGRPTDALSLFNQMQA 296

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           +   P+ V+ L  + AC++ G    G +L N + +  +  +     +++D+  + G L  
Sbjct: 297 SECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDT 356

Query: 366 ACDIVKSVSMGT-DMVLWQTLLGACQLYGD-VEMAEIASRKLVE 407
           A ++  +  +G  D+  W  L+    ++G   E  E+ SR  VE
Sbjct: 357 AVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVE 400


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/569 (39%), Positives = 340/569 (59%), Gaps = 21/569 (3%)

Query: 26  QAHLTTTGQFQSKLFP----VRSKIIEFY--ALSPLNELAYAHALFRQINAPSTNDFNAV 79
           Q HL      +S LFP      S ++  Y     PL+    A   F +I  P+     A+
Sbjct: 109 QLHLLA---LRSGLFPSDAYCASALLHMYHHCFRPLD----ARRAFDEIPTPNPVIVTAM 161

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRS--DALTCSFALKACARVLALFETLQIHSHVLRH 137
             G   ++     +  +R M+        D      AL A ARV     T  IH+ V + 
Sbjct: 162 ASGCMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKI 221

Query: 138 GFLADALLGTTLLDVYAKVG--EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           G      +  T++D YAK G  ++ +A+K+FD M  RD+ SWN +IA  AQ  L++EA+ 
Sbjct: 222 GLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMMD-RDVVSWNTMIALYAQNGLSTEALG 280

Query: 196 LFKRMKM-EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
           L+ +M +  G  + N VT+   L AC H GA + G +IH  +    L+ NV V  +V+DM
Sbjct: 281 LYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDM 340

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
           Y+KCG ++ A++ F  IK  K++++W+ M+  + +HG G  AL +F  M ++G+KP+ ++
Sbjct: 341 YSKCGKVEMAWKAFQKIKG-KNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYIT 399

Query: 315 YLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
           ++  L AC+HAGL+ +G   +N+M    G++P ++HYG +VDLLGRAG L EA  ++K +
Sbjct: 400 FITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEM 459

Query: 374 SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
            +  D  LW  LL AC++Y +VE+A+I + +L E+ + N G +VLLSN+YA    W +V 
Sbjct: 460 KVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVE 519

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA 493
           R+R  +K R ++K PG+S +E+ G  H F+  DKSH +++EIY  L++++ +I + GY  
Sbjct: 520 RMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVP 579

Query: 494 GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
            T  VLHD+  EE+E+ L  HSEKLAVAF L+++ + + I V KNLR+C DCH  IK+I+
Sbjct: 580 NTGSVLHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIIT 639

Query: 554 KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K+  REII+RD  RFH FKDG CSC DYW
Sbjct: 640 KLTGREIIIRDLKRFHHFKDGLCSCGDYW 668


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/569 (37%), Positives = 338/569 (59%), Gaps = 7/569 (1%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL++C+  G V    I  + AHL  +  F      +++ I+  YA      L  A  +F 
Sbjct: 93  LLKECTRLGKVEQGRI--VHAHLVDS-HFLDNHLVLQNIIVNMYA--KCGCLDDARRMFD 147

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           ++       + A++ G + +++P +A+L + QMLR   + +  T S  LKA      L  
Sbjct: 148 EMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDP 207

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             Q+H+  L++G+ +   +G+ L+D+YA+ G + +A+  FD M  +   SWNALI+G A+
Sbjct: 208 GTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHAR 267

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
                 A+ L  +M+ +  F+P   T    L+AC  +GA ++G  +H ++ +  L +   
Sbjct: 268 KGEGEHALHLLWKMQRKN-FQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAF 326

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           + N ++DMYAK G +D A  VFD +  +  +V+WNTM+   A HG G   L+ FEQM R 
Sbjct: 327 IGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRI 385

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           G++P+++S+L  L AC+H+GL+D+G+  F  M    V+P++ HY + VDLLGR G L  A
Sbjct: 386 GIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRA 445

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426
              ++ + +     +W  LLGAC+++ ++E+   A+ +  E+  ++ G  +LLSN+YA+ 
Sbjct: 446 ERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASA 505

Query: 427 ERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKI 486
            RW DV +VRK MK   VKK P  S++E+   +H F  +D++H + +EI  K +EI  KI
Sbjct: 506 GRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKI 565

Query: 487 KEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCH 546
           KE GY   TS VL  + ++E+E  L YHSEKLA+AF L++T   + I++ KN+R+C DCH
Sbjct: 566 KEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCH 625

Query: 547 DVIKLISKVYNREIIVRDRVRFHRFKDGA 575
             IK +SKV +REIIVRD  RFHRF+DG+
Sbjct: 626 AAIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 155/294 (52%), Gaps = 4/294 (1%)

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADAL-LGTTLLDVYAKVGEI 159
           RGS   D    S  LK C R+  + +   +H+H++   FL + L L   ++++YAK G +
Sbjct: 80  RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCL 139

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
             A+++FDEM  +D+ +W ALIAG +Q N   +A+ LF +M   G F+PN  T+   L A
Sbjct: 140 DDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG-FQPNHFTLSSLLKA 198

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
            G       G ++H +  +     +V V +A++DMYA+CG +D A   FD +   KS V+
Sbjct: 199 SGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPT-KSEVS 257

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           WN ++   A  G+G  AL L  +M R   +P   +Y + L AC   G ++ G  +   M 
Sbjct: 258 WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMI 317

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
             G+K       +++D+  +AG + +A  +   + +  D+V W T+L  C  +G
Sbjct: 318 KSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQHG 370


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 339/564 (60%), Gaps = 7/564 (1%)

Query: 20  IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAV 79
             ++Q+ A + T G F++    V +K++  Y       L  A  LF  ++      ++ +
Sbjct: 67  FQVRQVHAQIATNGAFRN--LAVANKLLYMYV--ERGALEDAQELFDGMSKRHPYSWSVI 122

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           + G A      +    +R++LR     D  +    ++AC  +  L     IH   L+ G 
Sbjct: 123 VGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGL 182

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
                +  TL+D+YA+   +  A ++F +M  RD+A+W  +I  LA+  +  E++  F R
Sbjct: 183 DYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDR 242

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+ +G+  P++V ++  + AC  LGA  +   IH YI      ++V++  A+IDMYAKCG
Sbjct: 243 MRNQGIV-PDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCG 301

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            ++ A  +FD ++ R +++TW+ M+ A+  HG G +ALELF  M R+G+ P+ +++++ L
Sbjct: 302 SVESARWIFDRMQVR-NVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLL 360

Query: 320 CACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
            AC+HAGL+++G R F+SM +  GV P++KHY  +VDLLGRAGRL EA ++++ + +  D
Sbjct: 361 YACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKD 420

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
            VLW  LLGAC+++  +++AE  +R L+++ S   G +VLLSN+YA   +W+D+ + R  
Sbjct: 421 EVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDL 480

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           M    ++K+PG ++IEVG  +++F   DK+H +  EIY+ L  +  K++  GY   T+ V
Sbjct: 481 MTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDV 540

Query: 499 LHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNR 558
           L+D+ EE K+  L  HSEKLA+AFGL+   +   I++ KNLR+C DCH   K +S +  +
Sbjct: 541 LYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQK 600

Query: 559 EIIVRDRVRFHRFKDGACSCKDYW 582
            IIVRD  RFH FK+G CSC+DYW
Sbjct: 601 TIIVRDAKRFHHFKEGVCSCRDYW 624



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 133/276 (48%), Gaps = 5/276 (1%)

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           LF+  Q+H+ +  +G   +  +   LL +Y + G +  A+++FD M  R   SW+ ++ G
Sbjct: 66  LFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGG 125

Query: 184 LAQ-GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
            A+ GN  S    +F+ +   G    ++ +    + AC  L   K G  IH    +  LD
Sbjct: 126 YAKVGNFFS-CFWMFRELLRSGA-PLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLD 183

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
               VC  ++DMYA+C +++ A ++F  +  ++ L TW  M+ A A  G    +L  F++
Sbjct: 184 YGHFVCATLVDMYARCKVVEDAHQIFVKM-WKRDLATWTVMIGALAESGVPVESLVFFDR 242

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M   G+ PD V+ +  + AC   G ++    +   +   G   ++    +++D+  + G 
Sbjct: 243 MRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGS 302

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           ++ A  I   + +  +++ W  ++ A   +G  E A
Sbjct: 303 VESARWIFDRMQV-RNVITWSAMIAAYGYHGQGEKA 337


>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g47530-like [Glycine max]
          Length = 515

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/512 (40%), Positives = 314/512 (61%), Gaps = 6/512 (1%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET--LQIHSH 133
           +N ++R  + S  P   +L YR M R    +D L+ SF +K+C R+  L+    +Q+H +
Sbjct: 5   YNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFVVKSCIRLXGLYLLGGVQVHCN 64

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           + ++G   D LL T ++D+Y+       A KVFDEM  RD  +WN +I+   + N   +A
Sbjct: 65  IFKYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCIRNNRTRDA 124

Query: 194 VDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           + LF  ++      +P++VT L  L AC HL A + G++IH Y+ E      + + NA+I
Sbjct: 125 LSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLSNALI 184

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
            MY++CG LDKA EVF      K++V+W+ M+   A++G G  A+E FE+M R G++PDD
Sbjct: 185 SMYSRCGCLDKAXEVFKGTG-NKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRPDD 243

Query: 313 VSYLAALCACNHAGLVDDGV-RLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
            +    L AC+++G+VD+G+   F+ M+   GV PN+ HYG +VDLLG AG L +A  ++
Sbjct: 244 QTLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHHYGCMVDLLGHAGLLDKAXQLI 303

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
            S+    D   W+TLLGAC+++G V + E     L+E+ +   GD VLL N+Y++   W+
Sbjct: 304 MSMVEKPDSTTWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDHVLLLNIYSSAGHWE 363

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
            V  VRK MKN+ ++  PG S IE+ GV+H+F   D SH +  EIYE LDEI  +++  G
Sbjct: 364 KVAEVRKLMKNKSIQTTPGCSTIELKGVVHEFVVDDVSHTRNHEIYETLDEINHQLRIAG 423

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
           Y    S  LH + ++EK   L +HSEKLA+AFG+++T   T+++V  NLRIC DC + +K
Sbjct: 424 YVVELSSELHKMDDKEKGYVLSHHSEKLAIAFGVLATPPGTTLRVANNLRICVDCFNFLK 483

Query: 551 LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             S VYN ++I+RD  RFH F+ G CSC +YW
Sbjct: 484 HFSGVYNGDVILRDHNRFHHFRGGCCSCSNYW 515


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/586 (38%), Positives = 350/586 (59%), Gaps = 13/586 (2%)

Query: 2   ANLNALLQKCSSNGAV---SHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNEL 58
           + L +LL   + +GA+   + +H   L+A+L    Q + ++  + + +++ YA      L
Sbjct: 202 STLVSLLPLLAQHGALFQGTSVHAYCLRAYLD---QNEEQVL-IGTALLDMYA--KCKHL 255

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKA 117
            YA  +F  +   +   ++A++ G     + T A   ++ ML  G     A + + AL+ 
Sbjct: 256 VYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRV 315

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA +  L    Q+H+ + + G  AD   G +LL +YAK G I  A  +FDE+ ++D  S+
Sbjct: 316 CASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISY 375

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            AL++G  Q   A EA  +FK+M+   V +P+  T++  + AC HL A + G   H  + 
Sbjct: 376 GALLSGYVQNGKAEEAFLVFKKMQACNV-QPDIATMVSLIPACSHLAALQHGRCSHGSVI 434

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
              L +   +CN++IDMYAKCG +D + +VFD +  R  +V+WNTM+  + +HG G  A 
Sbjct: 435 IRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPAR-DIVSWNTMIAGYGIHGLGKEAT 493

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDL 356
            LF  M   G +PDDV+++  + AC+H+GLV +G   F++M +  G+ P M+HY  +VDL
Sbjct: 494 TLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDL 553

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L R G L EA   ++S+ +  D+ +W  LLGAC+++ ++++ +  SR + ++G    G+F
Sbjct: 554 LARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNF 613

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSN+++A  R+D+   VR   K +  KK PG S+IE+ G +H F   D+SH    +IY
Sbjct: 614 VLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIY 673

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
            +LD I+  IK+ GY A TS VL D+ EEEKE AL YHSEKLA+AFG++S +E  +I V 
Sbjct: 674 HELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVT 733

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+C DCH  IK ++ V NR IIVRD  RFH FK+G CSC D+W
Sbjct: 734 KNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 162/353 (45%), Gaps = 6/353 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +LA A  +F +I AP    +NA++R  +       A+  YR ML      +  T  F LK
Sbjct: 48  QLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLK 107

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC+ +  L     IH+H    G   D  + T L+D+Y +      A  VF +M +RD+ +
Sbjct: 108 ACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVA 167

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WNA++AG A   +   A+     M+  G  +PN  T++  L      GA  +G  +H Y 
Sbjct: 168 WNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYC 227

Query: 237 REERLDMN---VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
               LD N   V++  A++DMYAKC  L  A  VF  +  R   VTW+ ++  F +    
Sbjct: 228 LRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNE-VTWSALIGGFVLCDRM 286

Query: 294 PRALELFEQMGRAGV-KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
             A  LF+ M   G+      S  +AL  C     +  G +L   +A  G+  ++    S
Sbjct: 287 TEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNS 346

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
           ++ +  +AG + EA  +   +++  D + +  LL      G  E A +  +K+
Sbjct: 347 LLSMYAKAGLINEATMLFDEIAI-KDTISYGALLSGYVQNGKAEEAFLVFKKM 398



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 7/243 (2%)

Query: 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN 209
           L+ +   G++  A++VFD +   D  ++NALI   +       A+DL++ M    V  PN
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRV-PPN 98

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
           + T    L AC  L     G  IH +     L  ++ V  A+ID+Y +C     A  VF 
Sbjct: 99  KYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFA 158

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRAL-ELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
            +  R  +V WN M+  +A HG    A+  L +   R G++P+  + ++ L      G +
Sbjct: 159 KMPMR-DVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGAL 217

Query: 329 DDGVRLFNSMANCGVKPNMKHY---GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
             G  +        +  N +      +++D+  +   L  AC +   +++  + V W  L
Sbjct: 218 FQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNE-VTWSAL 276

Query: 386 LGA 388
           +G 
Sbjct: 277 IGG 279


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/584 (36%), Positives = 337/584 (57%), Gaps = 20/584 (3%)

Query: 5   NALLQKCSS-----NGAVSHIHIKQ-LQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNEL 58
           N LL+KC+       G + H HI Q +  H    G          + ++  YA      L
Sbjct: 64  NTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMG----------NTLLNMYA--KCGSL 111

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
             A  +F ++       +  ++ G +   +P +A+L++ QMLR  +  +  T S  +KA 
Sbjct: 112 EEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAA 171

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           A         Q+H   ++ GF ++  +G+ LLD+Y + G +  A+ VFD +  R+  SWN
Sbjct: 172 AAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWN 231

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ALIAG A+ +   +A++LF+ M  +G F+P+  +      AC   G  ++G  +H Y+ +
Sbjct: 232 ALIAGHARRSGTEKALELFQGMLRDG-FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
               +     N ++DMYAK G +  A ++FD +  ++ +V+WN+++ A+A HG G  A+ 
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQHGFGKEAVW 349

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
            FE+M R G++P+++S+L+ L AC+H+GL+D+G   +  M   G+ P   HY +VVDLLG
Sbjct: 350 WFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLG 409

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG L  A   ++ + +     +W+ LL AC+++ + E+   A+  + E+  ++ G  V+
Sbjct: 410 RAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVI 469

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           L N+YA+  RW+D  RVRK MK   VKK P  S++E+   IH F  +D+ H +  EI  K
Sbjct: 470 LYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARK 529

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
            +E++ KIKE GY   TS V+  + ++E+E  L YHSEK+A+AF L++T   ++I + KN
Sbjct: 530 WEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKN 589

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +R+C DCH  IKL SKV  REIIVRD  RFH FKDG CSCKDYW
Sbjct: 590 IRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/586 (36%), Positives = 341/586 (58%), Gaps = 14/586 (2%)

Query: 1   MANLNALLQKCSSNGAVS---HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE 57
           +A + ++   C+ +  +S    +H   ++A  +   +F + L  + SK           +
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKC---------GD 346

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  +FR+++  S   + +++ G A       AV  + +M       D  T +  L  
Sbjct: 347 LDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNC 406

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CAR   L E  ++H  +  +    D  +   L+D+YAK G +  A+ VF EM V+DI SW
Sbjct: 407 CARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISW 466

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N +I G ++   A+EA+ LF  + +E  F P+E TV   L AC  L A+ +G +IH YI 
Sbjct: 467 NTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM 526

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
                 +  V N+++DMYAKCG L  A  +FD+I   K LV+W  M+  + +HG G  A+
Sbjct: 527 RNGYFSDRHVANSLVDMYAKCGALLLARLLFDDIT-SKDLVSWTVMIAGYGMHGFGKEAI 585

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDL 356
            LF QM +AG++PD++S+++ L AC+H+GLVD+G R FN M + C ++P ++HY  +VD+
Sbjct: 586 ALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDM 645

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L R G L +A   ++++ +  D  +W  LL  C+++ DV++AE  + K+ E+   N G +
Sbjct: 646 LARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYY 705

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VL++N+YA  E+W++V R+RK +  R ++K PG S+IE+ G ++ F   D S+ +  +I 
Sbjct: 706 VLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIE 765

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
             L  +  ++ E GY+  T   L D  E EKE ALC HSEKLA+A G+IS+     I+V 
Sbjct: 766 AFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVT 825

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+C DCH++ K +SK+  REI++RD  RFH+FKDG CSC+ +W
Sbjct: 826 KNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 172/338 (50%), Gaps = 15/338 (4%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  +F Q+       +N ++  LA S   + ++  +++M+      D+ T S   K
Sbjct: 144 DLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSK 203

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           + + + ++    Q+H ++L+ GF     +G +L+  Y K   + SA+KVFDEM  RD+ S
Sbjct: 204 SFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVIS 263

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH--- 233
           WN++I G     LA + + +F +M   G+ + +  T++   A C        G  +H   
Sbjct: 264 WNSIINGYVSNGLAEKGLSVFVQMLFSGI-EIDLATIVSVFAGCADSRLISLGRAVHCFG 322

Query: 234 ---EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
               + RE+R       CN ++DMY+KCG LD A  VF  +  R S+V++ +M+  +A  
Sbjct: 323 VKACFSREDRF------CNTLLDMYSKCGDLDSAKVVFREMSGR-SVVSYTSMIAGYARE 375

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
           G    A++LFE+M   G+ PD  +  A L  C    L+D+G R+   +    +  ++   
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVS 435

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            +++D+  + G ++EA ++V S     D++ W T++G 
Sbjct: 436 NALMDMYAKCGSMREA-ELVFSEMRVKDIISWNTVIGG 472



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 168/363 (46%), Gaps = 13/363 (3%)

Query: 28  HLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSS 87
           H  T  + +S +   +  I    +L  +++ A +   F +    S  D N  LR    S 
Sbjct: 20  HFQTHKELRSDVRVRKDVIFNRASLRTVSDRADSITTFDR----SVTDANTQLRRFCESG 75

Query: 88  KPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGT 147
              NAV      + G    D  T    L+ CA   +L +  ++ + +  +GF+ D+ LG+
Sbjct: 76  NLKNAVKLLH--VSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGS 133

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
            L  +Y   G++  A +VFD++ +     WN L+  LA+    S ++ LFK+M   GV +
Sbjct: 134 KLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGV-E 192

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
            +  T      +   L +   G+++H YI +        V N+++  Y K   +D A +V
Sbjct: 193 MDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKV 252

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           FD +   + +++WN+++  +  +G   + L +F QM  +G++ D  + ++    C  + L
Sbjct: 253 FDEMT-ERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRL 311

Query: 328 VDDG--VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           +  G  V  F   A C  + + +   +++D+  + G L  A  + + +S G  +V + ++
Sbjct: 312 ISLGRAVHCFGVKA-CFSRED-RFCNTLLDMYSKCGDLDSAKVVFREMS-GRSVVSYTSM 368

Query: 386 LGA 388
           +  
Sbjct: 369 IAG 371


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/518 (38%), Positives = 320/518 (61%), Gaps = 25/518 (4%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G   +SK + AVL +RQM       +++T    + AC   + L     +H   L
Sbjct: 120 YNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTL 179

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           ++GF +D  +    + +Y K G +  A+K+FDEM V+ + SWNA+++G AQ  LA+  ++
Sbjct: 180 KYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLE 239

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           L++ M M GV  P+ VT++G L++C +LGA   G ++   I+      N  + NA+I+MY
Sbjct: 240 LYRNMDMNGV-HPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMY 298

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           A+CG L KA  VFD +   ++LV+W  ++  + +HG G  A++LF++M R+G++PD  ++
Sbjct: 299 ARCGNLTKAQAVFDGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAF 357

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +  L AC+HAGL D G+  F  M  N  ++P  +HY  +VDLLGRAGRL+EA  +++S+ 
Sbjct: 358 VCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMP 417

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +  D  +W  LLGAC+++ +VE+AE+A  +++E+   N G +VLLSN+Y+       V R
Sbjct: 418 IKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLR 477

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R  MK + +KK PG SY+E+ G +H F   D++H++  EIY  L+E+            
Sbjct: 478 IRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEEL------------ 525

Query: 495 TSCVLHDIGEEEKEN----------ALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
            + ++ + G+ EK+N           +  HSEKLAVAFGL++T+    + + KNLRIC D
Sbjct: 526 EAIIMQEFGKPEKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICED 585

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH   K++SK+ +R++ VRD  RFH F++G+CSCKDYW
Sbjct: 586 CHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 186/390 (47%), Gaps = 6/390 (1%)

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
           H   + +NA ST  +N  LR LA   +   A+  Y QMLR   R +A T  FALK+CA +
Sbjct: 4   HCKSKSMNALST-PWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAAL 62

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE--MGVRDIASWNA 179
                  Q H  + + G + +  + T L+ +Y K   + +A+KVF+E     +    +NA
Sbjct: 63  SLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNA 122

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           L++G    +  SEAV LF++M  EGV   N VT+LG + AC      + G  +H    + 
Sbjct: 123 LVSGYVSNSKCSEAVLLFRQMNEEGV-PVNSVTLLGLIPACVSPINLELGSSLHCSTLKY 181

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
             D +V V N  I MY KCG ++ A ++FD +   K L++WN MV  +A +G     LEL
Sbjct: 182 GFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPV-KGLISWNAMVSGYAQNGLATNVLEL 240

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           +  M   GV PD V+ +  L +C + G    G  +   +   G   N     +++++  R
Sbjct: 241 YRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYAR 300

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
            G L +A  +   +   T +V W  ++G   ++G  E+A    ++++  G    G   + 
Sbjct: 301 CGNLTKAQAVFDGMPERT-LVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVC 359

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPG 449
                ++    D G     M  R+ +  PG
Sbjct: 360 VLSACSHAGLTDQGLEYFKMMKRNYQLEPG 389



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 122/261 (46%), Gaps = 4/261 (1%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           YA  LF ++       +NA++ G A +   TN +  YR M       D +T    L +CA
Sbjct: 205 YAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCA 264

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            + A     ++   +   GF ++  L   L+++YA+ G +  A+ VFD M  R + SW A
Sbjct: 265 NLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTA 324

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-RE 238
           +I G         AV LFK M   G+ +P+    +  L+AC H G   +G +  + + R 
Sbjct: 325 IIGGYGMHGHGEIAVQLFKEMIRSGI-EPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRN 383

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            +L+      + ++D+  + G L +A  + +++  +     W  ++ A  +H +   A  
Sbjct: 384 YQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAEL 443

Query: 299 LFEQMGRAGVKPDDVSYLAAL 319
            FE++    ++P+++ Y   L
Sbjct: 444 AFERV--IELEPENIGYYVLL 462


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/510 (40%), Positives = 311/510 (60%), Gaps = 5/510 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACARVLALFETLQIHSHV 134
           +N V+ G A +     A+   R+M + G  + D+ T S  L   A  + + +  +IH + 
Sbjct: 194 WNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYA 253

Query: 135 LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194
           +R+GF  D  +G++L+D+YAK   +  + + F  +  +D  SWN++IAG  Q       +
Sbjct: 254 VRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGL 313

Query: 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
             F+RM  E V KP  V+    + AC HL A   G ++H  I     D N  + ++++DM
Sbjct: 314 GFFRRMLKENV-KPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDM 372

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
           YAKCG +  A  VFD I  ++ +V W  ++M  A+HG    A+ LFE M   GV+P  V+
Sbjct: 373 YAKCGNIKMARYVFDRID-KRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVA 431

Query: 315 YLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
           ++A L AC+HAGLVD+G R FNSM  + G+ P ++HY +V DLLGRAGRL+EA D + ++
Sbjct: 432 FMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNM 491

Query: 374 -SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV 432
             +     +W  LL AC+ +  VE+AE    KL+ + S N G +VL+SN+Y+A +RW D 
Sbjct: 492 RGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDA 551

Query: 433 GRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYA 492
            R+R  M+ + +KK P  S+IEVG  +H F   DKSH  + +I + LD ++ ++++ GY 
Sbjct: 552 ARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYV 611

Query: 493 AGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLI 552
             T+ VLHD+ EE K   L  HSE+LA+A+G+IST+  T+I+V KN+R+C DCH  IK I
Sbjct: 612 IDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFI 671

Query: 553 SKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +K+  REI VRD  RFH FK+G+CSC DYW
Sbjct: 672 TKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 184/428 (42%), Gaps = 51/428 (11%)

Query: 16  AVSHIHIKQLQAHLTTT--------------------GQFQSKLFPVRSKIIEFYALSPL 55
           +VS    KQL AH+  T                     Q    LF          A S +
Sbjct: 22  SVSTRQAKQLHAHIVKTKGTLHSDNILVLSLYSNLNLLQHSLHLFNSLPSPPPPLAWSSI 81

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
            +   +H+L       S + FN+ +R L  S  P   V  +  +L+ S        + +L
Sbjct: 82  IKCYTSHSLLHL----SFSSFNS-MRSL--SVPPNRHV--FPSLLKASTLLKHHKLAHSL 132

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGT--------TLLDVYAKVGE--IVSAKKV 165
            AC   L L   L          ++A+AL+ T         + DV+ K GE  I   KKV
Sbjct: 133 HACTVRLGLDSDL----------YIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKV 182

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FD M VRD+ SWN +IAG AQ  +  EA+D+ + M   G  KP+  T+   L        
Sbjct: 183 FDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVD 242

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
             +G +IH Y      D +V + +++IDMYAKC  L+ +   F  I  RK  ++WN+++ 
Sbjct: 243 VNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAF-YILPRKDAISWNSIIA 301

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
               +G+  R L  F +M +  VKP  VS+ + + AC H   +  G +L   +   G   
Sbjct: 302 GCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDD 361

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
           N     S+VD+  + G ++ A  +   +    DMV W  ++  C ++G    A      +
Sbjct: 362 NEFIASSLVDMYAKCGNIKMARYVFDRID-KRDMVAWTAIIMGCAMHGHALDAVSLFENM 420

Query: 406 VEMGSNNC 413
           +E G   C
Sbjct: 421 LEDGVRPC 428


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 322/527 (61%), Gaps = 3/527 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  +F ++   +   +NA++ GL       N +  +R+M       D  T    L+
Sbjct: 38  DLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLR 97

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            CA + A +   Q+H++VL++G+  + ++G++L  +Y K G +   +KV   M +R++ +
Sbjct: 98  GCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVA 157

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN LIAG AQ       +DL+  MKM G+ +P+++T++  +++   L    +G +IH   
Sbjct: 158 WNTLIAGNAQNGHFEGVLDLYNMMKMSGL-RPDKITLVSVISSSAELATLFQGQQIHAEA 216

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +   +  V V +++I MY+KCG L+ + +   + +   S V W++M+ A+  HG G  A
Sbjct: 217 IKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDS-VLWSSMIAAYGFHGRGEEA 275

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVD 355
           + LFEQM + G+  +DV++L+ L AC+H GL + G+  F  M    G+KP ++HY  VVD
Sbjct: 276 VHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVD 335

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LLGR+G L EA  +++S+ +  D+V+W+TLL AC+++ + +MA   + +++ +   +   
Sbjct: 336 LLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSAT 395

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +VLLSN++A+ +RW DV +VR  M++R+VKK PG S++EV   + +F   DKSH    EI
Sbjct: 396 YVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEI 455

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
              L E+M ++K  GY   T+ V HD   EEKEN+L  HSEKLA+AFGL++    + I+V
Sbjct: 456 DLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRV 515

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLRIC DCH  IKLIS + NREIIVRD  RFH FK G CSC DYW
Sbjct: 516 MKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 139/276 (50%), Gaps = 4/276 (1%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L++ + + G++ SA KVFDEM  R++A+WNA+++GL Q       + LF+ M   G F P
Sbjct: 29  LINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELG-FLP 87

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           +E T+   L  C  L A   G ++H Y+ +   + N+VV +++  MY K G L +  +V 
Sbjct: 88  DEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVI 147

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
             ++ R ++V WNT++   A +G     L+L+  M  +G++PD ++ ++ + +      +
Sbjct: 148 KAMRIR-NVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATL 206

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
             G ++       G    +    S++ +  + G L+++   +       D VLW +++ A
Sbjct: 207 FQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEH-PDSVLWSSMIAA 265

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
              +G  E A     ++ + G     D   LS LYA
Sbjct: 266 YGFHGRGEEAVHLFEQMEQEGLGG-NDVTFLSLLYA 300


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/523 (39%), Positives = 318/523 (60%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++       +  ++RG A +S   +A   +  M     + D +T    + ACA 
Sbjct: 317 ARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACAS 376

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              L    +IHS V+R GF  D L+ T L+ +YAK G I  A++VFD M  RD+ SW+A+
Sbjct: 377 SADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAM 436

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I    +     EA + F  MK   V +P+ VT +  L ACGHLGA   G +I+    +  
Sbjct: 437 IGAYVENGCGEEAFETFHLMKRNNV-EPDVVTYINLLNACGHLGALDLGMEIYTQAIKAD 495

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L  ++ V NA+I+M  K G +++A  +F+N+  ++ +VTWN M+  +++HG+   AL+LF
Sbjct: 496 LVSHIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGNAREALDLF 554

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGR 359
           ++M +   +P+ V+++  L AC+ AG V++G R F+ + +  G+ P M+ YG +VDLLGR
Sbjct: 555 DRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGR 614

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L EA  ++  + +  +  +W TLL AC++YG++++AE A+ + +     +   +V L
Sbjct: 615 AGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQL 674

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           S++YAA   W++V +VRK M++R V+K  G ++IEV G +H F   D+SH +  EIY +L
Sbjct: 675 SHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAEL 734

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
             +M  IK  GY   T  VLH++GE+EKE A+ YHSEKLA+A+G++S      I++FKNL
Sbjct: 735 ARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNL 794

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH   K ISKV  REII RD  RFH FK+G CSC DYW
Sbjct: 795 RVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 184/366 (50%), Gaps = 7/366 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ++ H+  +G+ Q  ++ + + +I+ +++     +  A   F  +   +   +NA++ G
Sbjct: 81  KQVRDHIIQSGR-QLNIYELNT-LIKLHSIC--GNMLEARQTFDSVENKTVVTWNAIIAG 136

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A       A   +RQM+  +     +T    L AC+    L    + H+ V++ GF++D
Sbjct: 137 YAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSD 196

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +GT L+ +Y K G +  A++VFD +  RD++++N +I G A+     +A  LF RM+ 
Sbjct: 197 FRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQ 256

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           EG FKPN ++ L  L  C    A   G  +H       L  +V V  A+I MY  CG ++
Sbjct: 257 EG-FKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIE 315

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VFD +K R  +V+W  M+  +A + +   A  LF  M   G++PD ++Y+  + AC
Sbjct: 316 GARRVFDKMKVR-DVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINAC 374

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
             +  +     + + +   G   ++    ++V +  + G +++A  +  ++S   D+V W
Sbjct: 375 ASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSR-RDVVSW 433

Query: 383 QTLLGA 388
             ++GA
Sbjct: 434 SAMIGA 439



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 81/170 (47%), Gaps = 2/170 (1%)

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G ++ ++I +    +N+   N +I +++ CG + +A + FD+++  K++VTWN ++  +A
Sbjct: 80  GKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVE-NKTVVTWNAIIAGYA 138

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK 348
             G    A  LF QM    ++P  +++L  L AC+    +  G      +   G   + +
Sbjct: 139 QLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFR 198

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              ++V +  + G +  A  +   +    D+  +  ++G     GD E A
Sbjct: 199 IGTALVSMYVKGGSMDGARQVFDGL-YKRDVSTFNVMIGGYAKSGDGEKA 247


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/563 (38%), Positives = 343/563 (60%), Gaps = 14/563 (2%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAVL 80
           QL  H+  TG  + + F V++ +I  Y     + +A A  +F + N  S N    +NA++
Sbjct: 77  QLHGHVIKTG-CEPEPF-VQTSLISMYC--KCSTIASARKVFDE-NHHSRNLAVCYNALI 131

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
            G + +S+ ++AVL +RQM +     +A+T    +  CA  + L     +H+  +R G  
Sbjct: 132 AGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLD 191

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
            D  +G  LL +Y + G +  A+K+FD M  + + +WNA+I+G AQ  LA   +DL+++M
Sbjct: 192 GDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKM 251

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           +  G+  P+ VT++G L++C HLGA   G ++ + I       N  + NA+I+MYA+CG 
Sbjct: 252 EFTGIV-PDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGN 310

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L KA  +FD +   K++++W  ++  + +HG G  A++LF++M  +   PD  ++++ L 
Sbjct: 311 LVKARAIFDGMT-EKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLS 369

Query: 321 ACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC+HAGL + G+  F +M  + G++P  +HY  VVDLLGRAGRL+EA  ++ S+S+  D 
Sbjct: 370 ACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDG 429

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
            +W  LLGAC+++ +VE+AE+A  K++E    N G +VLLSN+++     + + RVR  M
Sbjct: 430 AVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMM 489

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           + R +KK PG SY+E  G IH F   D++H + +EIY  LD +   IK  G   G++   
Sbjct: 490 RERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRG---GSNDND 546

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
            +   EE    +  HSEKLA+AFGLI+T   T I V KNLR+C DCH  +KL+S++ +R+
Sbjct: 547 QESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQ 606

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           ++VRD  RFH FK+G CSCKDYW
Sbjct: 607 LVVRDATRFHHFKNGVCSCKDYW 629



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/353 (32%), Positives = 181/353 (51%), Gaps = 20/353 (5%)

Query: 58  LAYAHALFRQIN-----APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           +   H LF   N       +T  +NA LR LA       A+  Y QML      +A T  
Sbjct: 1   MTRPHPLFPYANKWLDLQNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFP 60

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE-MGV 171
           FA K+CA +       Q+H HV++ G   +  + T+L+ +Y K   I SA+KVFDE    
Sbjct: 61  FAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHS 120

Query: 172 RDIA-SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG---HLGAWK 227
           R++A  +NALIAG +  +  S+AV LF++M+ EGV   N VT+LG +  C    HLG   
Sbjct: 121 RNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGV-SVNAVTMLGLIPVCAGPIHLGF-- 177

Query: 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
            G  +H       LD ++ V N ++ MY +CG +D A ++FD +   K L+TWN M+  +
Sbjct: 178 -GTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMP-EKGLITWNAMISGY 235

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKP 345
           A +G     L+L+ +M   G+ PD V+ +  L +C H G    G  V     ++  G  P
Sbjct: 236 AQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNP 295

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +K+  +++++  R G L +A  I   ++   +++ W  ++    ++G  E+A
Sbjct: 296 FLKN--ALINMYARCGNLVKARAIFDGMTE-KNVISWTAIIAGYGMHGQGELA 345


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/558 (38%), Positives = 334/558 (59%), Gaps = 6/558 (1%)

Query: 26  QAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAH 85
           +AH         +L  V + I++ Y      ++  A  +F  +   ++  +NA++ G A 
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYC--KCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 86  SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           +     A+  + +M+        ++   AL+AC  +  L E +++H  ++R G  ++  +
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
              L+ +Y+K   +  A  VFDE+  R   SWNA+I G AQ   + +AV LF RM++E V
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
            KP+  T++  + A   +    +   IH Y     LD +V V  A+IDMYAKCG ++ A 
Sbjct: 360 -KPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIAR 418

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
            +F++ + R  ++TWN M+  +  HG G  A+ELFE+M   G+ P++ ++L+ L AC+HA
Sbjct: 419 ILFNSARERH-VITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHA 477

Query: 326 GLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
           GLVD+G   F SM  + G++P M+HYG++VDLLGRAG+L EA   ++ + M   + ++  
Sbjct: 478 GLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGA 537

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444
           +LGAC+L+ +VE+AE +++K+ E+G       VLL+N+YA    W DV RVR AM+   +
Sbjct: 538 MLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGL 597

Query: 445 KKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
           +K PG+S I++   IH F++   +H + +EIY +L +++ +IK  GY   T  + HD+ +
Sbjct: 598 QKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVED 656

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
           + K   L  HSEKLA+AFGLI T+  T+IQ+ KNLR+C DCH+  KLIS V  REII+RD
Sbjct: 657 DVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRD 716

Query: 565 RVRFHRFKDGACSCKDYW 582
             RFH FKDG CSC DYW
Sbjct: 717 IQRFHHFKDGKCSCGDYW 734



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 158/317 (49%), Gaps = 7/317 (2%)

Query: 110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
           T +  LK CA    L     +H+ +   G  ++AL  T L ++YAK      A++VFD M
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
            VRD  +WNAL+AG A+  LA  A+++  RM+ E   +P+ +T++  L AC +  A    
Sbjct: 121 PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAAC 180

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
            + H +     L+  V V  A++D Y KCG +  A  VFD +  + S V+WN M+  +A 
Sbjct: 181 REAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNS-VSWNAMIDGYAQ 239

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKH 349
           +GD   AL LF +M   GV   DVS LAAL AC   G +D+G+R+   +   G+  N+  
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 350 YGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
             +++ +  +  R+  A  +   +   T  V W  ++  C   G    +E A R    M 
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQ-VSWNAMILGCAQNG---CSEDAVRLFTRMQ 355

Query: 410 SNNC--GDFVLLSNLYA 424
             N     F L+S + A
Sbjct: 356 LENVKPDSFTLVSVIPA 372


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/558 (37%), Positives = 329/558 (58%), Gaps = 38/558 (6%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACA 119
           A ALF Q+  P    +N+++ G  H      A+  +  ML+ S  + D  T    L ACA
Sbjct: 230 ALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACA 289

Query: 120 RVLALFETLQIHSHVLRH-----GFLADALLG---------------------------- 146
              +L    QIH+H++R      G + +AL+                             
Sbjct: 290 NRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAF 349

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           T+LLD Y K+G+I  A+ +FD +  RD+ +W A+I G AQ  L S+A+ LF+ M  EG  
Sbjct: 350 TSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGP- 408

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
           KPN  T+   L+    L +   G ++H   IR E +  +V V NA+I MY++ G +  A 
Sbjct: 409 KPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVS-SVSVGNALITMYSRSGSIKDAR 467

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
           ++F++I   +  +TW +M+++ A HG G  A+ELFE+M R  +KPD ++Y+  L AC H 
Sbjct: 468 KIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHV 527

Query: 326 GLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
           GLV+ G   FN M N   ++P   HY  ++DLLGRAG L+EA + ++++ +  D+V W +
Sbjct: 528 GLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGS 587

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444
           LL +C+++  V++A++A+ KL+ +  NN G ++ L+N  +A  +W+D  +VRK+MK++ V
Sbjct: 588 LLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAV 647

Query: 445 KKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
           KK  GFS++++   +H F   D  H +   IY  + +I  +IK+ G+   T+ VLHD+ +
Sbjct: 648 KKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQ 707

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
           E KE  L +HSEKLA+AF LI+T + T++++ KNLR+C DCH  I+ IS +  REIIVRD
Sbjct: 708 EVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRD 767

Query: 565 RVRFHRFKDGACSCKDYW 582
             RFH FKDG+CSC+DYW
Sbjct: 768 ATRFHHFKDGSCSCQDYW 785



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 168/400 (42%), Gaps = 65/400 (16%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  +F +I  P +  +  ++ G  H     +AV  + +M+         T +  L +
Sbjct: 95  LDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLAS 154

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD---- 173
           CA   AL    ++HS V++ G      +  +LL++YAK G+ V AK VFD M ++D    
Sbjct: 155 CAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTW 214

Query: 174 ---------------------------IASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
                                      I SWN++I G         A++ F  M      
Sbjct: 215 NTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSL 274

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG------- 259
           KP++ T+   L+AC +  + K G +IH +I    +D+   V NA+I MYAK G       
Sbjct: 275 KPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHR 334

Query: 260 -----------------LLDKAFE---------VFDNIKCRKSLVTWNTMVMAFAVHGDG 293
                            LLD  F+         +FD++K R  +V W  M++ +A +G  
Sbjct: 335 IVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHR-DVVAWTAMIVGYAQNGLI 393

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             AL LF  M R G KP++ +  A L   +    +D G +L           ++    ++
Sbjct: 394 SDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNAL 453

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + +  R+G +++A  I   +    D + W +++ +   +G
Sbjct: 454 ITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHG 493



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 133/301 (44%), Gaps = 11/301 (3%)

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
           T+L  +AK G + SA++VFDE+   D  SW  +I G     L   AV  F RM   G+  
Sbjct: 84  TILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGI-S 142

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           P + T    LA+C    A   G K+H ++ +      V V N++++MYAKCG    A  V
Sbjct: 143 PTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVV 202

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           FD ++  K   TWNTM+           AL LF+QM      PD VS+ + +    H G 
Sbjct: 203 FDRMRL-KDTSTWNTMISMHMQFCQFDLALALFDQM----TDPDIVSWNSIITGYCHQGY 257

Query: 328 VDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
               +  F+ M  +  +KP+    GSV+        L+    I   +      +      
Sbjct: 258 DIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGN 317

Query: 387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVR---KAMKNRD 443
               +Y      E+A R +VE+      + +  ++L   Y +  D+   R    ++K+RD
Sbjct: 318 ALISMYAKSGAVEVAHR-IVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRD 376

Query: 444 V 444
           V
Sbjct: 377 V 377



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 155/321 (48%), Gaps = 21/321 (6%)

Query: 42  VRSKIIEFYALSPLNELAY---------------AHALFRQINAPSTNDFNAVLRGLAHS 86
           V  +I+E      LN +A+               A A+F  +       + A++ G A +
Sbjct: 331 VAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQN 390

Query: 87  SKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLG 146
              ++A++ +R M+R   + +  T +  L   + + +L    Q+H+  +R   ++   +G
Sbjct: 391 GLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVG 450

Query: 147 TTLLDVYAKVGEIVSAKKVFDEM-GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
             L+ +Y++ G I  A+K+F+ +   RD  +W ++I  LAQ  L +EA++LF++M +   
Sbjct: 451 NALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKM-LRIN 509

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE-ERLDMNVVVCNAVIDMYAKCGLLDKA 264
            KP+ +T +G L+AC H+G  ++G      ++    ++        +ID+  + GLL++A
Sbjct: 510 LKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEA 569

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV-SYLAALCACN 323
           +    N+     +V W +++ +  VH     A    E++    + P++  +YLA     +
Sbjct: 570 YNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKL--LLIDPNNSGAYLALANTLS 627

Query: 324 HAGLVDDGVRLFNSMANCGVK 344
             G  +D  ++  SM +  VK
Sbjct: 628 ACGKWEDAAKVRKSMKDKAVK 648


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/614 (34%), Positives = 359/614 (58%), Gaps = 45/614 (7%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE-LAYAHAL 64
           ++L KC S   +  IH + ++ +L    QF        S++I F +LS ++  L YA ++
Sbjct: 11  SVLDKCKSLCELRQIHAQMIKTNLLNH-QFTV------SRLIAFCSLSGVSGGLDYASSV 63

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA--LKACARVL 122
           F +I  P++  F A+++G + +S P  +++ Y +ML   + S  +  S    LKAC ++L
Sbjct: 64  FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLL 123

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           A  E  Q+H  VL+     D  +G +++ +Y   GEI  A++VFD M  RD+ SWN++IA
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIA 183

Query: 183 GL-------------------------------AQGNLASEAVDLFKRMKMEGVFKPNEV 211
           G                                 Q     +A+DLF+ M   G+ +P+  
Sbjct: 184 GYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGL-RPDGP 242

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNV-VVCNAVIDMYAKCGLLDKAFEVFDN 270
            ++  L+A   LG  +EG  +H Y+   +++++   + +A+IDMY+KCG ++ A+ VF +
Sbjct: 243 AIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRS 302

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
           I  R+++  WN+M+   A+HG    AL++F +M R  ++P+++++L  L  C+H GLV++
Sbjct: 303 ISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEE 362

Query: 331 GVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           G   F SM     + P ++HYG ++DL GRAGRL++A  +++++    D++ W+ +L A 
Sbjct: 363 GQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSAS 422

Query: 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPG 449
             +G +E+ + A+ + +E+  ++   +VLLSN+YA   RWDDV ++R  M+ R VKK+ G
Sbjct: 423 MKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAG 482

Query: 450 FSYIEVGGVIHKFFTSDKSHVKWR-EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKE 508
            S + V G +H+F    +    +  ++  K+ E++ ++K  GY    + VL DI +E KE
Sbjct: 483 CSSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKE 542

Query: 509 NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
           + L  HSEK+A+AFGLI  +++  I + KNLR+C DCH  +KL+SKVYNR+II+RD+ RF
Sbjct: 543 SLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRF 602

Query: 569 HRFKDGACSCKDYW 582
           H F++G CSC +YW
Sbjct: 603 HHFENGCCSCNEYW 616


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/558 (38%), Positives = 334/558 (59%), Gaps = 6/558 (1%)

Query: 26  QAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAH 85
           +AH         +L  V + I++ Y      ++  A  +F  +   ++  +NA++ G A 
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYC--KCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 86  SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           +     A+  + +M+        ++   AL+AC  +  L E +++H  ++R G  ++  +
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
              L+ +Y+K   +  A  VFDE+  R   SWNA+I G AQ   + +AV LF RM++E V
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
            KP+  T++  + A   +    +   IH Y     LD +V V  A+IDMYAKCG ++ A 
Sbjct: 360 -KPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIAR 418

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
            +F++ + R  ++TWN M+  +  HG G  A+ELFE+M   G+ P++ ++L+ L AC+HA
Sbjct: 419 ILFNSARERH-VITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHA 477

Query: 326 GLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
           GLVD+G   F SM  + G++P M+HYG++VDLLGRAG+L EA   ++ + M   + ++  
Sbjct: 478 GLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGA 537

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444
           +LGAC+L+ +VE+AE +++K+ E+G       VLL+N+YA    W DV RVR AM+   +
Sbjct: 538 MLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGL 597

Query: 445 KKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
           +K PG+S I++   IH F++   +H + +EIY +L +++ +IK  GY   T  + HD+ +
Sbjct: 598 QKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVED 656

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
           + K   L  HSEKLA+AFGLI T+  T+IQ+ KNLR+C DCH+  KLIS V  REII+RD
Sbjct: 657 DVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRD 716

Query: 565 RVRFHRFKDGACSCKDYW 582
             RFH FKDG CSC DYW
Sbjct: 717 IQRFHHFKDGKCSCGDYW 734



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 172/358 (48%), Gaps = 7/358 (1%)

Query: 69  NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL 128
            A + +D +A LR  A  S    A+  +  M          T +  LK CA    L    
Sbjct: 20  TALAADDHHARLRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGR 79

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
            +H+ +   G  ++AL  T L ++YAK      A++VFD M VRD  +WNAL+AG A+  
Sbjct: 80  AVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNG 139

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
           LA  A+++  RM+ E   +P+ +T++  L AC +  A     + H +     L+  V V 
Sbjct: 140 LARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVA 199

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
            A++D Y KCG +  A  VFD +  + S V+WN M+  +A +GD   AL LF +M   GV
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTKNS-VSWNAMIDGYAQNGDSREALALFNRMVEEGV 258

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
              DVS LAAL AC   G +D+G+R+   +   G+  N+    +++ +  +  R+  A  
Sbjct: 259 DVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASH 318

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC--GDFVLLSNLYA 424
           +   +   T  V W  ++  C   G    +E A R    M   N     F L+S + A
Sbjct: 319 VFDELDRRTQ-VSWNAMILGCAQNG---CSEDAVRLFTRMQLENVKPDSFTLVSVIPA 372


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/557 (39%), Positives = 315/557 (56%), Gaps = 36/557 (6%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACA 119
           A ++F  +   S   +NA++ G   +     A+ ++ +ML  S    D  T +  L ACA
Sbjct: 248 ALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACA 307

Query: 120 RVLALFETLQIHSHVLRHGF-----LADALLGT--------------------------- 147
            +  L    Q+HS++LR G      + +AL+ T                           
Sbjct: 308 NLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISF 367

Query: 148 -TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
             LL+ Y K+G+   A++VFD M  RD+ +W A+I G  Q     EA++LF+ M   G  
Sbjct: 368 TALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGP- 426

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           +PN  T+   L+AC  L     G +IH        + +V V NA+I +YA+ G +  A  
Sbjct: 427 EPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARR 486

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VFD I  RK  VTW +M++A A HG G +A+ LFE+M R GVKPD V+Y+    AC HAG
Sbjct: 487 VFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAG 546

Query: 327 LVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
            +D G R +  M N  G+ P M HY  +VDLL RAG L EA + ++ + +  D V+W +L
Sbjct: 547 FIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSL 606

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           L AC++  + ++AE+A+ KL+ +  +N G +  L+N+Y+A  RW+D  R+ K  K++ VK
Sbjct: 607 LAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVK 666

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K  GFS+  V   +H F   D  H +   I +K  E+  +IK+ G+    + VLHD+ +E
Sbjct: 667 KETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDE 726

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
            KE  L  HSEKLA+AFGLIST E T++++ KNLR+C DCH  IK ISKV +REIIVRD 
Sbjct: 727 LKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDA 786

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F+DG CSCKDYW
Sbjct: 787 TRFHHFRDGYCSCKDYW 803



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 177/430 (41%), Gaps = 67/430 (15%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + ++  YA S    LA A  +F Q+       +  ++ GL  + +  +AV  +  M+   
Sbjct: 101 NSLLSMYAKS--GRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEG 158

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
                   +  L +CA   A     ++HS V++ G  +   +  ++L +Y K G+  +A+
Sbjct: 159 LAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETAR 218

Query: 164 KVFDEMGVRD-------------------------------IASWNALIAGLAQGNLASE 192
            VF+ M VR                                I SWNA+IAG  Q  L   
Sbjct: 219 AVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDM 278

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A+  F RM      +P+E TV   L+AC +L   K G ++H YI    +  +  + NA+I
Sbjct: 279 ALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALI 338

Query: 253 DMYAKCG-------LLDKAF--------------------------EVFDNIKCRKSLVT 279
             YAK G       ++DKA                           EVFD +  R  ++ 
Sbjct: 339 STYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNR-DVIA 397

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           W  M++ +  +G    A+ELF  M R+G +P+  +  A L AC     +  G ++     
Sbjct: 398 WTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAI 457

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
               + ++    +++ +  R+G +  A  +   +    + V W +++ A   +G  E A 
Sbjct: 458 RSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAI 517

Query: 400 IASRKLVEMG 409
           +   +++ +G
Sbjct: 518 VLFEEMLRVG 527



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 156/350 (44%), Gaps = 26/350 (7%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYAL----SPLNELA 59
           +NAL+   + +G+V             T  +   K       +I F AL      L +  
Sbjct: 334 MNALISTYAKSGSVE------------TARRIMDKAVVADLNVISFTALLEGYVKLGDTK 381

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
            A  +F  +N      + A++ G   + +   A+  +R M+R     ++ T +  L ACA
Sbjct: 382 QAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACA 441

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-DIASWN 178
            +  L    QIH   +R        +   ++ VYA+ G +  A++VFD++  R +  +W 
Sbjct: 442 SLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWT 501

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ++I  LAQ  L  +A+ LF+ M   GV KP+ VT +G  +AC H G   +G + +E +  
Sbjct: 502 SMIVALAQHGLGEQAIVLFEEMLRVGV-KPDRVTYIGVFSACTHAGFIDKGKRYYEQMLN 560

Query: 239 ER---LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           E     +M+   C  ++D+ A+ GLL +A E    +      V W +++ A  V  +   
Sbjct: 561 EHGIVPEMSHYAC--MVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADL 618

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHA-GLVDDGVRLFNSMANCGVK 344
           A    E++    + PD+    +AL     A G  +D  R++    +  VK
Sbjct: 619 AELAAEKL--LSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVK 666



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 141/320 (44%), Gaps = 37/320 (11%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           +A    +LL +YAK G +  A+ VF +M  RD  SW  ++ GL +     +AV  F  M 
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            EG+  P++  +   L++C    A   G K+H ++ +  L   V V N+V+ MY KCG  
Sbjct: 156 GEGL-APSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDA 214

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           + A  VF+ +K R S  +WN MV  +   G    AL +FE M    +    VS+ A +  
Sbjct: 215 ETARAVFERMKVR-SESSWNAMVSLYTHQGRMDLALSMFENMEERSI----VSWNAIIAG 269

Query: 322 CNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM- 379
            N  GL D  ++ F+ M     ++P+     SV+           AC  ++ + MG  M 
Sbjct: 270 YNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVL----------SACANLRMLKMGKQMH 319

Query: 380 ------------VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
                        +   L+      G VE A    R++++       + +  + L   Y 
Sbjct: 320 SYILRTGMPYSSQIMNALISTYAKSGSVETA----RRIMDKAVVADLNVISFTALLEGYV 375

Query: 428 RWDDVGRVRK---AMKNRDV 444
           +  D  + R+    M NRDV
Sbjct: 376 KLGDTKQAREVFDVMNNRDV 395



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 9/123 (7%)

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGL----LDKAFEVFDNIK-CRKSLVTWNTM 283
           G  IH +  +  L ++  +CN ++  YA+ G+      +A  +FD+I   R++  TWN++
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +  +A  G    A  +F QM     + D VS+   +   N AG   D V+ F  M   G+
Sbjct: 104 LSMYAKSGRLADARVVFAQMP----ERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGL 159

Query: 344 KPN 346
            P+
Sbjct: 160 APS 162


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/515 (40%), Positives = 308/515 (59%), Gaps = 6/515 (1%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           PST  + A++     +     A+   R+      R D+ T    L ACARV A  ET + 
Sbjct: 4   PSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARV-ADLETGEA 62

Query: 131 HSHVLRH--GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
                R   G      + T  LD+Y K GE+  A+ VFDEM  RD  +W A++ G A   
Sbjct: 63  VWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNG 122

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
              EA+DLF  M+MEG  KP+  TV+GAL+AC  LGA   G +    +  + +  N V+ 
Sbjct: 123 HPREALDLFFAMQMEGA-KPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLG 181

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
            A+IDMYAKCG   +A+ VF  +   + ++ WN M++   + G    A  L  QM ++GV
Sbjct: 182 TALIDMYAKCGSTSEAWMVFQQM-LERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGV 240

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEAC 367
           K +D +++  LC+C H GLV+DG + F++M +   + P ++HYG +VDL  RAG L+EA 
Sbjct: 241 KLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAH 300

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
            ++  + M  + V+W  LLG C+++ + ++AE A ++L+ +   N G++V+LSN+Y+   
Sbjct: 301 QLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSG 360

Query: 428 RWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487
           RW+D  ++R  MK + ++KVP  S++E+ G +HKF+  D SH    +IY KLDE+  ++K
Sbjct: 361 RWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEMK 420

Query: 488 EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHD 547
             GY   T  V+ D+  EEKEN L +HSEK+A+AF LI+T    +I+V KNLR+C DCH 
Sbjct: 421 AMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCHS 480

Query: 548 VIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            IKLIS++  REI+VRD  RFH F+DG CSC DYW
Sbjct: 481 AIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/547 (37%), Positives = 330/547 (60%), Gaps = 6/547 (1%)

Query: 37  SKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWY 96
           +KL  + + + + Y  S    +  A  +F  ++  +   +N+++ G   + +P  A+  +
Sbjct: 280 AKLVNISTALADMY--SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVF 337

Query: 97  RQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV 156
            +ML        +T   AL ACA +  L     +H  V +    +D  +  +L+ +Y+K 
Sbjct: 338 EKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKC 397

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
             +  A  +F+ +  R   SWNA+I G AQ    SEA++ F  MK  G+ KP+  T++  
Sbjct: 398 KRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGM-KPDSFTMVSV 456

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
           + A   L   +    IH  I    LD N+ V  A++DMY+KCG +  A ++FD I  R  
Sbjct: 457 IPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRH- 515

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFN 336
           ++TWN M+  +  HG G  AL+LF++M +  V+P+D++YL+ + AC+H+GLVD+G+R F 
Sbjct: 516 VITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFK 575

Query: 337 SM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395
           SM  + G++P+M HYG++VDLLGRAGR++EA D ++++ +   + ++    GAC+++ ++
Sbjct: 576 SMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNI 635

Query: 396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEV 455
           E+ E A++KL E+  +  G  VLL+N+YA+  +W  V  VRK M+ + +KK PG S +E+
Sbjct: 636 EVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVEL 695

Query: 456 GGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHS 515
              +H F++   +H + + IY  L+E++++IK  GY   T+ +L D+ ++ +E  L  HS
Sbjct: 696 RNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHS 754

Query: 516 EKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGA 575
           EKLA+AFGL++TS  T+I V KNLR+C DCH+  K IS V  REIIVRD  RFH FK+G 
Sbjct: 755 EKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGI 814

Query: 576 CSCKDYW 582
           CSC DYW
Sbjct: 815 CSCGDYW 821



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 191/385 (49%), Gaps = 13/385 (3%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL+ C+S   +  I    ++  L     FQ+KL  + SK         +NE A    +F 
Sbjct: 55  LLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSK------YGSINEAA---RVFE 105

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            I+      ++ +L+G A +S    A+ +  +M     +      ++ LK C     L  
Sbjct: 106 PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKR 165

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             +IH  ++ + F A+    T ++++YAK  +I  A K+FD M  RD+ SWN +IAG +Q
Sbjct: 166 GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQ 225

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
              A +A++L  RM+ EG  +P+ +T++  L A   +G    G  IH Y         V 
Sbjct: 226 NGFAKKALELVLRMQDEGQ-RPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVN 284

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           +  A+ DMY+KCG ++ A  +FD +  +K++V+WN+M+  +  +G+  +A+ +FE+M   
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMD-QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEE 343

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           G+ P  V+ + AL AC   G ++ G  +   +    +  ++    S++ +  +  R+  A
Sbjct: 344 GIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIA 403

Query: 367 CDIVKSVSMGTDMVLWQTL-LGACQ 390
            DI  +++ G   V W  + LG  Q
Sbjct: 404 SDIFNNLN-GRTHVSWNAMILGYAQ 427


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/565 (38%), Positives = 340/565 (60%), Gaps = 11/565 (1%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALS-PLNELAYAHALFRQINAPSTNDFNAVL 80
           + Q+ AH+  +G  +S     RS + +   L+     ++Y   +F  +  P +  F +++
Sbjct: 28  LHQVHAHIIVSGYGRS-----RSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLI 82

Query: 81  RGLAHSSK-PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           +  + S      ++ +Y +M+  +      T +  +K+CA + AL     +H HVL HGF
Sbjct: 83  KSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGF 142

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
             D  +   L+ +Y K G++++A+KVFD++  R I +WN++I+G  Q   A EA+ LF R
Sbjct: 143 GLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDR 202

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           MK  GV +P+  T +  L+AC HLGA+  G  +HEYI    LD+NVV+  ++I+MY +CG
Sbjct: 203 MKETGV-EPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCG 261

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            + KA EVFD++K  +++V W  M+  +  +G G +A+ELF +M R G+ P+ ++++A L
Sbjct: 262 NVSKAREVFDSMK-ERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVL 320

Query: 320 CACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS-VSMGT 377
            AC HAGLV++G RLF S+     + P ++H   +VD+LGRAG L EA + +K  +    
Sbjct: 321 SACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENP 380

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
              +   +LGAC+++ + ++    +  L+     N   +V+LSN+YA   R D V  VR 
Sbjct: 381 APAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRN 440

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            M  + +KK  G+S +EV    + F   DKSH +   IY  LDE+M+K  E GY   +  
Sbjct: 441 NMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDS 500

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           V+H++ EEE+E AL YHSEKLA+AFGL+ TS  T I++ KNLR+C DCH  IK IS + +
Sbjct: 501 VMHELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISS 560

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           REIIVRD++RFH FK G+CSC DYW
Sbjct: 561 REIIVRDKLRFHHFKVGSCSCLDYW 585


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/518 (38%), Positives = 321/518 (61%), Gaps = 25/518 (4%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G   +SK ++AVL +RQM       +++T    + AC   + L     +H   L
Sbjct: 111 YNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTL 170

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           ++GF +D  +    + +Y K G +  A+K+FDEM V+ + SWNA+++G AQ  LA+  ++
Sbjct: 171 KYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLE 230

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           L++ M M GV  P+ VT++G L++C +LGA   G ++   ++      N  + NA+I+MY
Sbjct: 231 LYRNMDMNGV-HPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMY 289

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           A+CG L KA  VFD +   ++LV+W  ++  + +HG G  A++LF++M R+G++PD  ++
Sbjct: 290 ARCGNLTKAQAVFDGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAF 348

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +  L AC+HAGL D G+  F  M  N  ++P  +HY  +VDLLGRAGRL+EA  +++S+ 
Sbjct: 349 VCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMP 408

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +  D  +W  LLGAC+++ +VE+AE+A  +++E+   N G +VLLSN+Y+       V R
Sbjct: 409 IKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLR 468

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R  MK + +KK PG SY+E+ G +H F   D++H++  EIY  L+E+            
Sbjct: 469 IRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEEL------------ 516

Query: 495 TSCVLHDIGEEEKEN----------ALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
            + ++ + G+ EK+N           +  HSEKLAVAFGL++T+    + + KNLRIC D
Sbjct: 517 EAIIMQEFGKPEKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICED 576

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH   K++SK+ +R++ VRD  RFH F++G+CSCKDYW
Sbjct: 577 CHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 184/384 (47%), Gaps = 6/384 (1%)

Query: 68  INAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET 127
           +NA ST  +N  LR LA   +   A+  Y QMLR   R +A T  FALK+CA +      
Sbjct: 1   MNALST-PWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILG 59

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE--MGVRDIASWNALIAGLA 185
            Q H  + + G + +  + T L+ +Y K   + +A+KVF+E     +    +NAL++G  
Sbjct: 60  SQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYV 119

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
             +  S+AV LF++M  EGV   N VT+LG + AC      + G  +H    +   D +V
Sbjct: 120 SNSKCSDAVLLFRQMNEEGV-PVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDV 178

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V N  I MY KCG ++ A ++FD +   K L++WN MV  +A +G     LEL+  M  
Sbjct: 179 SVVNCFITMYMKCGSVNYAQKLFDEMPV-KGLISWNAMVSGYAQNGLATNVLELYRNMDM 237

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            GV PD V+ +  L +C + G    G  +   M   G   N     +++++  R G L +
Sbjct: 238 NGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTK 297

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A  +   +   T +V W  ++G   ++G  E+A    ++++  G    G   +      +
Sbjct: 298 AQAVFDGMPERT-LVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACS 356

Query: 426 YERWDDVGRVRKAMKNRDVKKVPG 449
           +    D G     M  R+ +  PG
Sbjct: 357 HAGLTDQGLEYFKMMKRNYQLEPG 380



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 122/261 (46%), Gaps = 4/261 (1%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           YA  LF ++       +NA++ G A +   TN +  YR M       D +T    L +CA
Sbjct: 196 YAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCA 255

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            + A     ++   +   GF ++  L   L+++YA+ G +  A+ VFD M  R + SW A
Sbjct: 256 NLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTA 315

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-RE 238
           +I G         AV LFK M   G+ +P+    +  L+AC H G   +G +  + + R 
Sbjct: 316 IIGGYGMHGHGEIAVQLFKEMIRSGI-EPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRN 374

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            +L+      + ++D+  + G L +A  + +++  +     W  ++ A  +H +   A  
Sbjct: 375 YQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAEL 434

Query: 299 LFEQMGRAGVKPDDVSYLAAL 319
            FE++    ++P+++ Y   L
Sbjct: 435 AFERV--IELEPENIGYYVLL 453


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/556 (37%), Positives = 335/556 (60%), Gaps = 13/556 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF--NAVLRGLAHSSKPTNA 92
           F+S  F + +++IE YA   L+ L  A  +F +  AP  N F  NA+L+ LA +     A
Sbjct: 280 FRSDPF-LSTRLIEAYAA--LSALPAARQVFDE--APVKNIFVWNAMLKALALADHGEEA 334

Query: 93  VLWYRQMLRGSHRSDALTCSFALKAC-----ARVLALFETLQIHSHVLRHGFLADALLGT 147
           +     M R     D+ + +  LKAC     + + A     ++H+H +R G+     + T
Sbjct: 335 LTCLADMGRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVAT 394

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM-KMEGVF 206
           TL+D YAK+G +  A++VF  M  R++ SW+A+I   A+     +A+ +F+ M   +   
Sbjct: 395 TLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADL 454

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            PN +T++  L AC  + A  +G  +H YI     D+ V V NA++ MY KCG L+    
Sbjct: 455 VPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRY 514

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +F+ I  R+++V+WN+++  + +HG G  +L++FE+M   G+ P+ +++++ L AC+H G
Sbjct: 515 IFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVG 574

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           LV+ G +LF SM    V P  +HY  +VDLLGRAGRL EA ++++S+ +     +W +LL
Sbjct: 575 LVEQGKKLFESMVEYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLL 634

Query: 387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK 446
           GAC+++G VE AE+A   L ++   N G++VLL+++YA  +  + V  +++ ++   ++K
Sbjct: 635 GACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEK 694

Query: 447 VPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEE 506
           VPG S+IEV   ++ F + D  + +  E+   + E + ++K  GY   T  VL+DI EEE
Sbjct: 695 VPGCSWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEE 754

Query: 507 KENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRV 566
           KE  L  HSEKLAVAFGLI T    +I++ KNLR+C DCH V K ISK  +REI+VRD  
Sbjct: 755 KERILLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVN 814

Query: 567 RFHRFKDGACSCKDYW 582
           RFH F++G CSC+DYW
Sbjct: 815 RFHHFRNGVCSCRDYW 830


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/547 (38%), Positives = 334/547 (61%), Gaps = 14/547 (2%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  YA     ++  A  LF ++  P    +NA++ G + +    ++V  +++++ 
Sbjct: 258 VVTGLISLYA--KCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVG 315

Query: 102 GSHRSDALTCSFALKACARVLALF--ETLQ--IHSHVLRHGFLADALLGTTLLDVYAKVG 157
              R  + T    L A   V + F  E L   +H+HV++ G  A+A + T L  +Y +  
Sbjct: 316 MGLRPSSST----LVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFN 371

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
           ++ SA++ FD M  + + SWNA+I+G AQ  L   AV LF++M+   V +PN +T+  AL
Sbjct: 372 DMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNV-RPNPLTISSAL 430

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
           +AC  LGA   G  +H+ I  E+L++NV V  A+IDMY KCG + +A  +FD++   K++
Sbjct: 431 SACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMD-NKNV 489

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           V+WN M+  + +HG G  AL+L++ M  A + P   ++L+ L AC+H GLV +G  +F S
Sbjct: 490 VSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRS 549

Query: 338 M-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS-MGTDMVLWQTLLGACQLYGDV 395
           M ++ G+ P ++H   +VDLLGRAG+L+EA +++           +W  LLGAC ++ D 
Sbjct: 550 MTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDG 609

Query: 396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEV 455
           ++A++AS+KL E+   N G +VLLSNLY + +++ +   VR+  K+R + K PG + IE+
Sbjct: 610 DLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEI 669

Query: 456 GGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHS 515
           G   H F   D++H +   IY  L+++  K+ E GY   T   L+D+ EEEKE+ +  HS
Sbjct: 670 GDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHS 729

Query: 516 EKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGA 575
           EKLA+AFGL++T   T I++ KNLR+C DCH+  K+ISKV  R I+VRD  RFH F+DG 
Sbjct: 730 EKLAIAFGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGV 789

Query: 576 CSCKDYW 582
           CSC DYW
Sbjct: 790 CSCGDYW 796



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 185/393 (47%), Gaps = 14/393 (3%)

Query: 5   NALLQKCSSNG----AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
            +L   CS  G    + +   ++ L A    +G F +  F   +    ++ LS  N+   
Sbjct: 121 TSLASSCSRGGISPPSAASAALRPLHALAVASG-FAADNFVASALAKLYFTLSRGND--- 176

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  + +P T  +N +L GL+ S      V   R    GS R D+ T +  L A A 
Sbjct: 177 ARKVFDAVPSPDTVLWNTLLAGLSGSEALEAFV---RMAGAGSVRPDSTTLASVLPAAAE 233

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           V        +H+   + G      + T L+ +YAK G++  A+ +FD M   D+ ++NAL
Sbjct: 234 VANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNAL 293

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I+G +   +   +V+LFK +   G+ +P+  T++  +      G       +H ++ +  
Sbjct: 294 ISGYSINGMVGSSVELFKELVGMGL-RPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAG 352

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           LD N  V  A+  +Y +   +D A   FD +   K++ +WN M+  +A +G    A+ LF
Sbjct: 353 LDANAPVSTALTTLYCRFNDMDSARRAFDAMP-EKTMESWNAMISGYAQNGLTEMAVALF 411

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
           +QM    V+P+ ++  +AL AC   G +  G  +   +AN  ++ N+    +++D+  + 
Sbjct: 412 QQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKC 471

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           G + EA  I  S+    ++V W  ++    L+G
Sbjct: 472 GSIAEARCIFDSMD-NKNVVSWNVMISGYGLHG 503


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/527 (40%), Positives = 313/527 (59%), Gaps = 4/527 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  LF  +       +N V+     +     AV  + ++ +   +++ +T    L  
Sbjct: 257 LGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNV 316

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
              + +L +   IH  V   G+  DA++ T L+ +Y +      A K+F +MG +D+ +W
Sbjct: 317 YTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITW 376

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
             +    AQ     EA+ LF+ M++EG  +P   T++  L  C HL A ++G +IH +I 
Sbjct: 377 TVMCVAYAQNGFRKEALQLFQEMQLEGR-RPTSATLVAVLDTCAHLAALQKGRQIHSHII 435

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           E R  M +VV  A+I+MY KCG + +A  VF+ +  R  LV WN+M+ A+A HG     L
Sbjct: 436 ENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILV-WNSMLGAYAQHGYYDETL 494

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
           +LF QM   GVK D VS+++ L A +H+G V DG + F +M  +  + P  + YG VVDL
Sbjct: 495 QLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDL 554

Query: 357 LGRAGRLQEACDIVKSVSMG-TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LGRAGR+QEA DIV  +S    D +LW TLLGAC+ +   + A+ A+ +++E   ++ G 
Sbjct: 555 LGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGA 614

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +V+LSN+YAA   WD V R+RK M++R VKK PG S IE+   +H+F   D+SH +   I
Sbjct: 615 YVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPI 674

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
           Y +LD +  +++  GY   T  +LHD+ +E KE+ L YHSE+LA+AFGLIST   T ++V
Sbjct: 675 YAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRV 734

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH   K ISK+  REI+VRD  RFH FKDG CSCKDYW
Sbjct: 735 IKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 179/381 (46%), Gaps = 11/381 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ALLQ+CSS   V H   +++  H+   G  Q+ L  V   +I+ YA      +  A  +F
Sbjct: 9   ALLQRCSSAKNVDHG--RRVHWHVRDRGFEQNNL--VCGHLIQMYA--QCGSVPEAQQVF 62

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             +       +  ++           A+  + QM         +T    L ACA   +L 
Sbjct: 63  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 122

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           + ++IH  +L+ GF  D  +GT L+++Y K G +  A   F  +  RD+ SW A+IA   
Sbjct: 123 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV 182

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q +  + A  L++RM+++GV  PN++T+     A G      EG  ++  +    ++ +V
Sbjct: 183 QHDQFALARWLYRRMQLDGVV-PNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDV 241

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V N+ ++M+   GLL  A  +F+++  R  +VTWN ++  +  + +   A+ LF ++ +
Sbjct: 242 RVMNSAVNMFGNAGLLGDARRLFEDMVDR-DVVTWNIVITLYVQNENFGEAVRLFGRLQQ 300

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            GVK +D++++  L        +  G  +   +   G   +     +++ L GR     +
Sbjct: 301 DGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQ 360

Query: 366 ACDIVKSVSMGT-DMVLWQTL 385
           A  I   V MG+ D++ W  +
Sbjct: 361 AWKIF--VDMGSKDVITWTVM 379



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 99/199 (49%), Gaps = 2/199 (1%)

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           KP+    +  L  C        G ++H ++R+   + N +VC  +I MYA+CG + +A +
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ ++ RK +  W  M+  +   GD  RAL +F QM    V P  V+Y+A L AC    
Sbjct: 61  VFEILE-RKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 119

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            + DG+ +   +   G + ++    +++++  + G ++ A D  K +    D+V W  ++
Sbjct: 120 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEH-RDVVSWTAMI 178

Query: 387 GACQLYGDVEMAEIASRKL 405
            AC  +    +A    R++
Sbjct: 179 AACVQHDQFALARWLYRRM 197


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/598 (35%), Positives = 350/598 (58%), Gaps = 40/598 (6%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
            IKQ+ AH+   G  Q     V +K+I       +   +Y   +F Q+N P+   + A++
Sbjct: 57  QIKQVHAHIIRNGLSQCSY--VLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMI 114

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH-VLRHGF 139
           RG A     + +  +Y +M R      + T S   KAC   L +    Q+H+  +L  GF
Sbjct: 115 RGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGF 174

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN--------------------- 178
            +D  +G +++D+Y K G +  A+KVFDEM  RD+ SW                      
Sbjct: 175 ASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDD 234

Query: 179 ----------ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
                     A++ G AQ     EA++ F++M+  G+ + +EVT+ G ++AC  LGA K 
Sbjct: 235 LPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGM-ETDEVTLAGVISACAQLGAVKH 293

Query: 229 GDKIHEYIREERLDM--NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
            + I +           NVVV +A+IDMY+KCG  D+A++VF+ +K  +++ ++++M++ 
Sbjct: 294 ANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMK-ERNVFSYSSMILG 352

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKP 345
           +A+HG    AL+LF  M +  ++P+ V+++  L AC+HAGLV+ G +LF  M    GV P
Sbjct: 353 YAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAP 412

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
           +  HY  +VDLLGRAG L+EA D+VK++ M  +  +W  LLGAC+++G+ ++A+IA+ +L
Sbjct: 413 SPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANEL 472

Query: 406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE-VGGVIHKFFT 464
            ++  N  G+++LLSN+YA+  RW++V ++RK ++ +  KK PG S+ E   G IH FF 
Sbjct: 473 FKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFA 532

Query: 465 SDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGL 524
            D +H +  EI + L +++ +++ +GY        +D+ ++EKE  L  HSEKLA+A+GL
Sbjct: 533 GDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGL 592

Query: 525 ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + T    +I++ KN+RIC DCH+V+   S++  REIIVRD +RFH F +G CSC ++W
Sbjct: 593 LCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/598 (35%), Positives = 350/598 (58%), Gaps = 40/598 (6%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
            IKQ+ AH+   G  Q     V +K+I       +   +Y   +F Q+N P+   + A++
Sbjct: 57  QIKQVHAHIIRNGLSQCSY--VLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMI 114

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH-VLRHGF 139
           RG A     + +  +Y +M R      + T S   KAC   L +    Q+H+  +L  GF
Sbjct: 115 RGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGF 174

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN--------------------- 178
            +D  +G +++D+Y K G +  A+KVFDEM  RD+ SW                      
Sbjct: 175 ASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDD 234

Query: 179 ----------ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
                     A++ G AQ     EA++ F++M+  G+ + +EVT+ G ++AC  LGA K 
Sbjct: 235 LPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGM-ETDEVTLAGVISACAQLGAVKH 293

Query: 229 GDKIHEYIREERLDM--NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
            + I +           NVVV +A+IDMY+KCG  D+A++VF+ +K  +++ ++++M++ 
Sbjct: 294 ANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMK-ERNVFSYSSMILG 352

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKP 345
           +A+HG    AL+LF  M +  ++P+ V+++  L AC+HAGLV+ G +LF  M    GV P
Sbjct: 353 YAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAP 412

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
           +  HY  +VDLLGRAG L+EA D+VK++ M  +  +W  LLGAC+++G+ ++A+IA+ +L
Sbjct: 413 SPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANEL 472

Query: 406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE-VGGVIHKFFT 464
            ++  N  G+++LLSN+YA+  RW++V ++RK ++ +  KK PG S+ E   G IH FF 
Sbjct: 473 FKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFA 532

Query: 465 SDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGL 524
            D +H +  EI + L +++ +++ +GY        +D+ ++EKE  L  HSEKLA+A+GL
Sbjct: 533 GDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGL 592

Query: 525 ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + T    +I++ KN+RIC DCH+V+   S++  REIIVRD +RFH F +G CSC ++W
Sbjct: 593 LCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/558 (38%), Positives = 312/558 (55%), Gaps = 38/558 (6%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A ++F +++      +NA++ G   S    +A   +R+M+      D  T +  L ACA 
Sbjct: 253 ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACAN 312

Query: 121 VLALFETLQIHSHVLR--HGFLADALL--GTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
                    +H  ++R    F+ +A L     L+ +Y+K G+IV AK++FD M ++D+ S
Sbjct: 313 AGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVS 372

Query: 177 WNA-------------------------------LIAGLAQGNLASEAVDLFKRMKMEGV 205
           WN                                +++G   G L+ +A+ LF +M+ E V
Sbjct: 373 WNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDV 432

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
            KP + T  GA+AACG LGA K G ++H ++ +   + +    NA++ MYAKCG ++ A 
Sbjct: 433 -KPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDAR 491

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
            VF  +    S V+WN M+ A   HG G  ALELF+QM   G+ PD +S+L  L ACNHA
Sbjct: 492 LVFLVMPNLDS-VSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHA 550

Query: 326 GLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
           GLVD+G   F SM  + G+ P   HY  ++DLLGR+GR+ EA D++K++       +W+ 
Sbjct: 551 GLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEA 610

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444
           +L  C+  GD+E    A+ +L  M   + G ++LLSN Y+A  RW D  RVRK M++R V
Sbjct: 611 ILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGV 670

Query: 445 KKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
           KK PG S+IEVG  IH F   D  H + +E+Y+ L+ I  ++++ GY   T  VLHD+  
Sbjct: 671 KKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEP 730

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
            EKE  L  HSEKLAV FGL+      ++ V KNLRIC DCH  +  +SK   REI+VRD
Sbjct: 731 HEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRD 790

Query: 565 RVRFHRFKDGACSCKDYW 582
             RFH FKDG CSC +YW
Sbjct: 791 VRRFHHFKDGECSCGNYW 808



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 186/478 (38%), Gaps = 111/478 (23%)

Query: 22  IKQLQAHLTTTGQFQSKLFP-VRSKIIEFYALSPLNELAYAHALFRQINAPS-------- 72
           ++ L A L T     +   P +  ++I  Y LSP  +LA   ALFR    P         
Sbjct: 44  LRCLHARLLTADLLHAPSHPHLTLRLIHLYTLSP--DLATPAALFRSDPDPGPVAATSLV 101

Query: 73  -------------------------TNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRS 106
                                    T   NA++   A +S    AV  +  +L  GS R 
Sbjct: 102 AAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRP 161

Query: 107 DALTCSFALKACARV--LALFETLQIHSHVLRHGFLA----------------------- 141
           D  + +  + A  ++  LA     Q+H  VL+ G  A                       
Sbjct: 162 DDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWD 221

Query: 142 -----------DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
                      D L  TT++  Y + G++ +A+ VF+E+  +    WNA+I+G  Q  + 
Sbjct: 222 ARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMC 281

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH--------EYIREERLD 242
           ++A +LF+RM  E V   +E T    L+AC + G +  G  +H         ++ E  L 
Sbjct: 282 ADAFELFRRMVSEKV-PLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALP 340

Query: 243 MN---------------------------VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
           +N                           VV  N ++  Y   G LDKA EVF  +  + 
Sbjct: 341 VNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKN 400

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
            L +W  MV  +   G    AL+LF QM    VKP D +Y  A+ AC   G +  G +L 
Sbjct: 401 DL-SWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLH 459

Query: 336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
             +  CG + +     +++ +  + G + +A  +V  V    D V W  ++ A   +G
Sbjct: 460 AHLVQCGFEASNSAGNALLTMYAKCGAVNDA-RLVFLVMPNLDSVSWNAMISALGQHG 516


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/584 (36%), Positives = 347/584 (59%), Gaps = 21/584 (3%)

Query: 16  AVSHIHI----KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAP 71
           A SH+ +    K+L A+    G      F V S +++ Y      ++     +F  +   
Sbjct: 307 ACSHLEMLRTGKELHAYALKNGSLDENSF-VGSALVDMYC--NCKQVLSGCRVFDGMFDR 363

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLALFETLQI 130
               +NA++ G A +     A+L + +M   +   +++ T +  + AC R  A  +   I
Sbjct: 364 KIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAI 423

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H  V++ G   D  +   L+D+Y+++G+I  AK++F +M  RD+ +WN +I G       
Sbjct: 424 HGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERH 483

Query: 191 SEAVDLFKRMKM----------EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
            +A+ +  +M++              KPN +T++  L +C  L A  +G +IH Y  +  
Sbjct: 484 EDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 543

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L  +V V +A++DMYAKCG L  + +VFD I  R +++TWN +VMA+ +HG+   A+++ 
Sbjct: 544 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGNSQDAIDML 602

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
             M   GVKP++V++++   AC+H+G+V++G+++F +M  + GV+P+  HY  VVDLLGR
Sbjct: 603 RMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGR 662

Query: 360 AGRLQEACDIVKSVSMGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           AGR++EA  ++  +    D    W +LLGAC+++ ++E+ EIA++ L+++  N    +VL
Sbjct: 663 AGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVL 722

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           L+N+Y++   W     VR+ MK + V+K PG S+IE G  +HKF   D SH +  ++   
Sbjct: 723 LANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGY 782

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+ +  ++++ GY   TSCVLH++ E+EKE  LC HSEKLA+AFG+++TS  T I+V KN
Sbjct: 783 LETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKN 842

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH   K ISKV +REII+RD  RFH FK+G CSC DYW
Sbjct: 843 LRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 172/369 (46%), Gaps = 12/369 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ AH+   G +      V + ++  Y      +    + +F +I+  +   +N+++  
Sbjct: 113 KQIHAHVYKFG-YGVDSVTVANTLVNLY--RKCGDFGAVYKVFDRISERNQVSWNSLISS 169

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL---ALFETLQIHSHVLRHGF 139
           L    K   A+  +R ML       + T      AC+       L    Q+H++ LR G 
Sbjct: 170 LCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGE 229

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
           L ++ +  TL+ +Y K+G++ S+K +      RD+ +WN +++ L Q     EA++  + 
Sbjct: 230 L-NSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLRE 288

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKC 258
           M +EGV +P+  T+   L AC HL   + G ++H Y ++   LD N  V +A++DMY  C
Sbjct: 289 MVLEGV-EPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 347

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDDVSYLA 317
             +     VFD +  RK +  WN M+  +A +     AL LF +M   AG+  +  +   
Sbjct: 348 KQVLSGCRVFDGMFDRK-IGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAG 406

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            + AC  +G       +   +   G+  +     +++D+  R G++  A  I   +    
Sbjct: 407 VVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKME-DR 465

Query: 378 DMVLWQTLL 386
           D+V W T++
Sbjct: 466 DLVTWNTII 474



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 157/336 (46%), Gaps = 14/336 (4%)

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           +LR    S+    AVL Y  M+    + D       LKA A +  +    QIH+HV + G
Sbjct: 64  LLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFG 123

Query: 139 FLADAL-LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           +  D++ +  TL+++Y K G+  +  KVFD +  R+  SWN+LI+ L        A++ F
Sbjct: 124 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 183

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWK---EGDKIHEY-IREERLDMNVVVCNAVID 253
           + M  E V +P+  T++    AC +    +    G ++H Y +R+  L  N  + N ++ 
Sbjct: 184 RCMLDEDV-EPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGEL--NSFIINTLVA 240

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313
           MY K G L  +  +  + + R  LVTWNT++ +   +     ALE   +M   GV+PD  
Sbjct: 241 MYGKMGKLASSKVLLGSFEGR-DLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGF 299

Query: 314 SYLAALCACNHAGLVDDGVRLFN-SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
           +  + L AC+H  ++  G  L   ++ N  +  N     ++VD+     ++   C +   
Sbjct: 300 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDG 359

Query: 373 VSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
           +     + LW  ++     Y   E  E A    +EM
Sbjct: 360 M-FDRKIGLWNAMITG---YAQNEYDEEALLLFIEM 391


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/542 (38%), Positives = 317/542 (58%), Gaps = 5/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + ++  YA   L  L  A  +F ++  PST  + A++     +     AV   R    
Sbjct: 108 VLTSLLSLYAKCGL--LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFA 165

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              R D+ T    L ACAR+  L     +     + G      + T  +D+Y K GE+  
Sbjct: 166 NGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAK 225

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A++VFD+M  +D  +W A++ G A      EA+DLF  M+ EG+ KP+   V GAL+AC 
Sbjct: 226 AREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGM-KPDCYAVAGALSACT 284

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            LGA   G +    +  +    N V+  A+IDMYAKCG   +A+ VF  ++ +K ++ WN
Sbjct: 285 RLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMR-KKDIIVWN 343

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            M++   + G    A  L  QM ++GVK +D +++  LC+C H GL+ DG R F++M   
Sbjct: 344 AMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 403

Query: 342 -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + P ++HYG +VDLL RAG LQEA  +V  + M  + V+   LLG C+++ + E+AE 
Sbjct: 404 YHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEH 463

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
             ++L+ +   N G++V+LSN+Y+   RW+D  ++R  MK + V+KVP  S++E  G +H
Sbjct: 464 VLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVH 523

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
           +F   DKSH    +IY+KLDE+  ++K  GY   T  V+ D+ +EEKE+ L +HSEKLA+
Sbjct: 524 EFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAI 583

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AF L+ T    +I+V KNLR+C DCH  IKL+S++ +REIIVRD  RFH F+DG+CSC D
Sbjct: 584 AFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCND 643

Query: 581 YW 582
           YW
Sbjct: 644 YW 645



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 3/182 (1%)

Query: 208 PNEVTVLGALAACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           P+ +T+  AL +   L    + G+++H    +     N  V  +++ +YAKCGLL +A  
Sbjct: 68  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 127

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VFD +    S V W  ++ A+   GD   A+ +       G++PD  + +  L AC    
Sbjct: 128 VFDEMP-HPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 186

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            +  G  ++ +    GV  ++    + VDL  + G + +A ++   +    D V W  ++
Sbjct: 187 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRH-KDAVAWGAMV 245

Query: 387 GA 388
           G 
Sbjct: 246 GG 247


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/512 (41%), Positives = 320/512 (62%), Gaps = 15/512 (2%)

Query: 73  TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS 132
           T   NA ++G   + + T+A    R++  G  R D ++ +  +   A    +    ++  
Sbjct: 46  TRTNNAFIQGYCSAGRVTDA----RRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFE 101

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
            VL        +  T+++  + + G++ SA++VF+EM  RD+ SWNA+I+G     L  E
Sbjct: 102 RVL----APTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVE 157

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A+ LF+ M  EG F PN  TV+  L+AC   GA + G  +H ++ ++RL  +  +  A++
Sbjct: 158 ALCLFRWMMEEG-FVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALV 216

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPD 311
           DMYAKCG ++ A EVF  ++ R +  TWN M+   A++G   +AL++F QM   G V PD
Sbjct: 217 DMYAKCGAVELALEVFTGLRARNT-CTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPD 275

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           +V+++  L AC+HAG VD G   F ++    GV+  ++HY  +VDLL R+G LQEA  ++
Sbjct: 276 EVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLI 335

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
             + M  D+V+W+ LLG C+L+ +V+MAE     + EM +   GD VLLSNLYAA  RW+
Sbjct: 336 TEMPMKPDVVVWRALLGGCRLHKNVKMAE---NVISEMEATCSGDHVLLSNLYAAVGRWN 392

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
            V  VR+ M+++ ++K+PG S +E+ G IH+F + DKSH  + +I+ KL EI  +++++G
Sbjct: 393 GVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHG 452

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
           Y   T+ V +DI +EEKE AL YHSEKLA+AFGLI      +I++ KNLR C DCH   K
Sbjct: 453 YVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAK 512

Query: 551 LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           L+SK+Y+REI+VRDR RFH F+ GACSC D+W
Sbjct: 513 LVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 123/245 (50%), Gaps = 3/245 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++       +NA++ G   +  P  A+  +R M+      +  T    L AC  
Sbjct: 127 ARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTG 186

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             AL     +H  V +     D  LGT L+D+YAK G +  A +VF  +  R+  +WNA+
Sbjct: 187 AGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAM 246

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I GLA    +++A+D+F++M++ G   P+EVT +G L AC H G + +  K H Y   ++
Sbjct: 247 INGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAG-FVDAGKEHFYTIPQK 305

Query: 241 LDMNVVVCN--AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             + +++ +   ++D+ A+ G L +A ++   +  +  +V W  ++    +H +   A  
Sbjct: 306 YGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAEN 365

Query: 299 LFEQM 303
           +  +M
Sbjct: 366 VISEM 370



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 41/203 (20%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
            +H+   + GFL         +  Y   G +  A++VFD M  RD  S+N++I G A   
Sbjct: 32  SLHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSG 91

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
               A  LF+R     V  P  VT             W                      
Sbjct: 92  DVGSAQRLFER-----VLAPTPVT-------------W---------------------- 111

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
            +++  + + G ++ A  VF+ +   + LV+WN M+     +     AL LF  M   G 
Sbjct: 112 TSMVAGFCRAGDVESARRVFEEMP-ERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGF 170

Query: 309 KPDDVSYLAALCACNHAGLVDDG 331
            P+  + ++ L AC  AG ++ G
Sbjct: 171 VPNRGTVVSVLSACTGAGALETG 193


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/579 (36%), Positives = 340/579 (58%), Gaps = 12/579 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQ-LQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           LL+ C   G +SH+ + + + A +   G F++ +F V++ +I  YA      L  A  +F
Sbjct: 125 LLKAC---GGLSHLQMGRFVHAQVFRLG-FEADVF-VQNGLIALYA--KCRRLGCARTVF 177

Query: 66  RQINAPSTN--DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
             +  P      + A++   A + +P  A+  + QM +   + D +     L A   +  
Sbjct: 178 EGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQD 237

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L +   IH+ V++ G   +  L  +L  +YAK G++ +AK +FD+M   ++  WNA+I+G
Sbjct: 238 LEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            A+   A +A+DLF  M  + V +P+ +++  A++AC  +G+ ++   + EY+       
Sbjct: 298 YAKNGFAKDAIDLFHEMINKDV-RPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRD 356

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           +V + +A+IDM+AKCG ++ A  VFD    R  +V W+ M++ + +HG    A+ L+  M
Sbjct: 357 DVFISSALIDMFAKCGSVECARSVFDRTLDR-DVVVWSAMIVGYGLHGQAREAISLYRAM 415

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
            R GV P+DV++L  L ACNH+G+V +G   FN MA+  + P  +HY  ++DLLGRAG L
Sbjct: 416 ERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHL 475

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            +A +++K + +   + +W  LL AC+ +  VE+ + A+++L  +  +N G +V LSNLY
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLY 535

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           AA   WD V  VR  MK + + K  G S++EV G +  F   DKSH ++ EI  +++ I 
Sbjct: 536 AAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIE 595

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            ++KE G+ A     LHD+ +EE E  LC HSE++ +A+GLIST + T++++ KNLR C 
Sbjct: 596 SRLKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTTLRITKNLRACV 655

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +CH   KLISK+  REI+VRD  RFH FKDG CSC DYW
Sbjct: 656 NCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 201/407 (49%), Gaps = 12/407 (2%)

Query: 21  HIKQLQAHLTTTG-QFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAV 79
            ++Q+ A L   G QF   L    +K+I  +A S   ++ +A  +F  +  P    +NA+
Sbjct: 36  QLRQIHARLLVLGLQFSGFLI---TKLI--HASSSYGDITFARQVFDDLPRPQVFPWNAI 90

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           +RG + ++   +A+L Y +M       D+ T    LKAC  +  L     +H+ V R GF
Sbjct: 91  IRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGF 150

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGLAQGNLASEAVDLF 197
            AD  +   L+ +YAK   +  A+ VF+ + +  R I SW A+++  AQ     EA+++F
Sbjct: 151 EADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIF 210

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
            +M+   V KP+ V ++  L A   L   ++G  IH  + +  L+    +  ++  MYAK
Sbjct: 211 SQMRKMDV-KPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAK 269

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           CG +  A  +FD +K   +L+ WN M+  +A +G    A++LF +M    V+PD +S  +
Sbjct: 270 CGQVATAKILFDKMKS-PNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITS 328

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           A+ AC   G ++    +   ++    + ++    +++D+  + G ++ A  +    ++  
Sbjct: 329 AISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDR-TLDR 387

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           D+V+W  ++    L+G    A I+  + +E    +  D   L  L A
Sbjct: 388 DVVVWSAMIVGYGLHGQAREA-ISLYRAMERDGVHPNDVTFLGLLIA 433


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/545 (40%), Positives = 330/545 (60%), Gaps = 10/545 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTND--FNAVLRGLAHSSKPTNAVLWYRQM 99
           + + +++ YA     +L YA  +F  +  P  ND  ++A++ G     + T A   ++ M
Sbjct: 242 IGTALLDMYA--KCKQLVYACRVFHGM--PVRNDVTWSALIGGFVLCDRMTEAFNLFKDM 297

Query: 100 L-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           L  G     A + + AL+ CA +  L    Q+H+ + + G  AD     +LL +YAK G 
Sbjct: 298 LVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGL 357

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           I  A   FDE+ V+D  S+ AL++G  Q   A EA  +FK+M+   + +P+  T++  + 
Sbjct: 358 INEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNM-EPDIATMVSLIP 416

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC HL A + G   H  +    L +   +CN++IDMYAKCG +D + +VFD +  R  +V
Sbjct: 417 ACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPAR-DVV 475

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +WNTM+  + +HG G  A  LF  M   G  PDDV+++  + AC+H+GLV +G   F++M
Sbjct: 476 SWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTM 535

Query: 339 AN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
            +  G+ P M+HY  +VDLL R G L EA   ++S+ +  D+ +W  LLGAC+++ ++++
Sbjct: 536 THKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDL 595

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
            +  SR + ++G    G+FVLLSN+++A  R+D+   VR   K +  KK PG+S+IE+ G
Sbjct: 596 GKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEING 655

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            +H F   D+SH   R+IY +LD IM  IK+ GY A TS VL D+ EEEKE AL YHSEK
Sbjct: 656 SLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEK 715

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LA+AFG++S +E  +I V KNLR+C DCH  IK ++ V NR IIVRD  RFH FK+G CS
Sbjct: 716 LAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCS 775

Query: 578 CKDYW 582
           C ++W
Sbjct: 776 CGNFW 780



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 165/353 (46%), Gaps = 6/353 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +LA A  +F +I AP    +NA++R  +       A+  YR MLR     +  T  F LK
Sbjct: 49  QLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLK 108

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC+ ++ L     IH+H    G   D  + T L+D+Y +      A+ VF +M +RD+ +
Sbjct: 109 ACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVA 168

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WNA++AG A   +   A+     M+  G  +PN  T++  L      GA  +G  IH Y 
Sbjct: 169 WNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYC 228

Query: 237 REERLDMN---VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
               L+ N   V++  A++DMYAKC  L  A  VF  +  R   VTW+ ++  F +    
Sbjct: 229 LRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VTWSALIGGFVLCDRM 287

Query: 294 PRALELFEQMGRAGV-KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
             A  LF+ M   G+      S  +AL  C     +  G +L   +A  G+  ++    S
Sbjct: 288 TEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNS 347

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
           ++ +  +AG + EA      +++  D + +  LL  C   G  E A +  +K+
Sbjct: 348 LLSMYAKAGLINEATMFFDEIAV-KDTISYGALLSGCVQNGKAEEAFLVFKKM 399



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 7/243 (2%)

Query: 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN 209
           L+ +   G++  A++VFD +   D  ++NALI   +       A+DL++ M +     PN
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM-LRFRVAPN 99

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
           + T    L AC  L   + G  IH +     L  ++ V  A+ID+Y +C     A  VF 
Sbjct: 100 KYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFA 159

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRAL-ELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
            +  R  +V WN M+  +A HG    A+  L +     G++P+  + ++ L      G +
Sbjct: 160 KMPMR-DVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGAL 218

Query: 329 DDGVRLFNSMANCGVKPNMKHY---GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
             G  +        ++ N +      +++D+  +  +L  AC +   + +  D V W  L
Sbjct: 219 FQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VTWSAL 277

Query: 386 LGA 388
           +G 
Sbjct: 278 IGG 280


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/562 (39%), Positives = 318/562 (56%), Gaps = 8/562 (1%)

Query: 22   IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
            + ++  H   TG      F V S  I  Y       +  A  LF +++      +NA++ 
Sbjct: 543  VNEVHKHAVETGLISD--FRVGSAFIHMYI--RCGSIDDARLLFDKLSVRHVTTWNAMIG 598

Query: 82   GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
            G A       A+  + QM R     DA T    L A     AL    ++HSH    G L 
Sbjct: 599  GAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAG-LV 657

Query: 142  DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
            D  +G  L+  Y+K G +  AK+VFD+M  R++ +W  +I GLAQ     +A   F +M 
Sbjct: 658  DLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQML 717

Query: 202  MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
             EG+  P+  T +  L+AC   GA +   ++H +     L  ++ V NA++ MYAKCG +
Sbjct: 718  REGIV-PDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSI 776

Query: 262  DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
            D A  VFD++   + + +W  M+   A HG G  AL+ F +M   G KP+  SY+A L A
Sbjct: 777  DDARSVFDDM-VERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTA 835

Query: 322  CNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
            C+HAGLVD+G R F SM  + G++P M+HY  +VDLLGRAG L+EA   + ++ +  D  
Sbjct: 836  CSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDA 895

Query: 381  LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
             W  LLGAC  YG++EMAE A+++ +++   +   +VLLSN+YAA  +W+    VR  M+
Sbjct: 896  PWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQ 955

Query: 441  NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
             + ++K PG S+IEV   IH F   D SH + +EIY +L++++ ++K  GY   T  VL 
Sbjct: 956  RKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLR 1015

Query: 501  DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
            +  +E KE ALC HSEKLA+ +GL+ T     I+V+KNLR+C DCH   K ISK+  REI
Sbjct: 1016 NTDQEHKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREI 1075

Query: 561  IVRDRVRFHRFKDGACSCKDYW 582
            + RD  RFH FKDG CSC DYW
Sbjct: 1076 VARDAKRFHHFKDGVCSCGDYW 1097



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 150/299 (50%), Gaps = 8/299 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K++ AH+  +G FQS +  V + ++  Y       +  A  +F ++   +   +  ++ G
Sbjct: 239 KKIHAHIIQSG-FQSDV-RVETALVNMYV--KCGSIEDAQLIFDKMVERNVISWTVMIGG 294

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
           LAH  +   A   + QM R     ++ T    L A A   AL    ++HSH +  G   D
Sbjct: 295 LAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALD 354

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G  L+ +YAK G I  A+ VFD M  RDI SW  +I GLAQ     EA  LF +M+ 
Sbjct: 355 LRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQR 414

Query: 203 EGVFKPNEVTVLGAL--AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
            G   PN  T L  L  +A     A +    +H++  E     ++ + NA+I MYAKCG 
Sbjct: 415 NGCL-PNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGS 473

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
           +D A  VFD + C + +++WN M+   A +G G  A  +F QM + G+ PD  +YL+ L
Sbjct: 474 IDDARLVFDGM-CDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLL 531



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 162/318 (50%), Gaps = 4/318 (1%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ GLA +     A   + QM +     D+ T    L       AL    ++H H +
Sbjct: 492 WNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAV 551

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             G ++D  +G+  + +Y + G I  A+ +FD++ VR + +WNA+I G AQ     EA+ 
Sbjct: 552 ETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALS 611

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF +M+ EG F P+  T +  L+A     A +   ++H +  +  L +++ V NA++  Y
Sbjct: 612 LFLQMQREG-FIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTY 669

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCG +  A +VFD++   +++ TW  M+   A HG G  A   F QM R G+ PD  +Y
Sbjct: 670 SKCGNVKYAKQVFDDM-VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTY 728

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           ++ L AC   G ++    + N   + G+  +++   ++V +  + G + +A  +   + +
Sbjct: 729 VSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDM-V 787

Query: 376 GTDMVLWQTLLGACQLYG 393
             D+  W  ++G    +G
Sbjct: 788 ERDVFSWTVMIGGLAQHG 805



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 187/384 (48%), Gaps = 11/384 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +LQ+C     +  +  KQ+   +  +G  Q+    V +K++  Y       L  A  +F 
Sbjct: 124 ILQRCLKQEDI--LLAKQVHVCIIKSGMEQN--LYVANKLLRVYI--RCGRLQCARQVFD 177

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           ++   +   +  ++ G A      +A+  Y +M +   + + +T    LKAC   + L  
Sbjct: 178 KLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKW 237

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             +IH+H+++ GF +D  + T L+++Y K G I  A+ +FD+M  R++ SW  +I GLA 
Sbjct: 238 GKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAH 297

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
                EA  LF +M+ EG F PN  T +  L A    GA +   ++H +     L +++ 
Sbjct: 298 YGRGQEAFHLFLQMQREG-FIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLR 356

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V NA++ MYAK G +D A  VFD +   + + +W  M+   A HG G  A  LF QM R 
Sbjct: 357 VGNALVHMYAKSGSIDDARVVFDGMT-ERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRN 415

Query: 307 GVKPDDVSYLAALCACNHAGLVD-DGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQ 364
           G  P+  +YL+ L A   A     + V++ +  A   G   +++   +++ +  + G + 
Sbjct: 416 GCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSID 475

Query: 365 EACDIVKSVSMGTDMVLWQTLLGA 388
           +A  +V       D++ W  ++G 
Sbjct: 476 DA-RLVFDGMCDRDVISWNAMMGG 498


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/546 (37%), Positives = 320/546 (58%), Gaps = 26/546 (4%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALKA-C 118
           AH LF +I  P +  +N +L     S     A+ ++ +M ++     + L   FA     
Sbjct: 124 AHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQM 183

Query: 119 ARVLALFETLQ---------IHSHVLRHGFLADA------------LLGTTLLDVYAKVG 157
            +   LF  +          + S  + HG L  A            ++ T +L  Y K G
Sbjct: 184 QKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFG 243

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
           ++  A+++F  M V+++ +WN++IAG  +   A + + +FK M +E   +PN +++   L
Sbjct: 244 KVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVL 302

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
             C +L A   G ++H+ + +  L  +   C ++I MY KCG LD A+++F  +  RK +
Sbjct: 303 LGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDV 361

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           +TWN M+  +A HG G +AL LF++M    +KPD ++++A + ACNHAG VD GV+ F S
Sbjct: 362 ITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKS 421

Query: 338 MAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
           M    G++    HY  V+DLLGRAGRL EA  ++K +       ++ TLLGAC+++ +++
Sbjct: 422 MKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLD 481

Query: 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
           +AE A+R L+ +   +   +V L+N+YAA  +WD V +VRK MK  +V K+PG+S+IE+ 
Sbjct: 482 LAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIK 541

Query: 457 GVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSE 516
            V H+F +SD+ H +   I++KL+E+  K+K  GY       LHD+ EE KE  L +HSE
Sbjct: 542 SVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSE 601

Query: 517 KLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
           KLA+AFGL+ T+  T I+VFKNLR+C DCH  IK IS +  REIIVRD  RFH F++G C
Sbjct: 602 KLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFC 661

Query: 577 SCKDYW 582
           SC DYW
Sbjct: 662 SCGDYW 667



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 44/300 (14%)

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ-GNLASEAVDLFKRMKMEGVFKPNEV 211
           + +  ++ SA+ VF++M VR   +WN +++G  +      EA +LF ++      +P+ V
Sbjct: 83  FVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIP-----EPDSV 137

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           +    +  C +L ++  G K       +    ++   N +I  +A+ G + KAF++F ++
Sbjct: 138 S-YNIMLVC-YLRSY--GVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF-SV 192

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
              K+ V+W+ M+  +  HGD   A EL++ +G   V    V   A L      G V+  
Sbjct: 193 MPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSV----VVETAMLTGYMKFGKVELA 248

Query: 332 VRLFNSMA----------------NCGVKPNMKHYGSVVDLLGRAGRLQEA-----CDIV 370
            R+F  MA                NC  +  +K + ++++   R   L  +     C  +
Sbjct: 249 ERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNL 308

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
            ++ +G  M     L+    L  D      A   L+ M    CGD      L+    R D
Sbjct: 309 SALPLGRQM---HQLVSKSPLSKDT----TACTSLISMYC-KCGDLDSAWKLFLEMPRKD 360



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 13/158 (8%)

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA-VHGDGPRALELFEQ 302
           +VV  N  I  + +   L+ A  VF+ +  R + VTWNTM+  +  V G    A ELF++
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTT-VTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 303 MGRAGVKPDDVSY-LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           +     +PD VSY +  +C     G V   +  FN M    VK ++  + +++    + G
Sbjct: 131 IP----EPDSVSYNIMLVCYLRSYG-VKAALAFFNKMP---VK-DIASWNTLISGFAQNG 181

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
           ++Q+A D+  SV    + V W  ++     +GD+E AE
Sbjct: 182 QMQKAFDLF-SVMPEKNGVSWSAMISGYVEHGDLEAAE 218


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/545 (40%), Positives = 330/545 (60%), Gaps = 10/545 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTND--FNAVLRGLAHSSKPTNAVLWYRQM 99
           + + +++ YA     +L YA  +F  +  P  ND  ++A++ G     + T A   ++ M
Sbjct: 242 IGTALLDMYA--KCKQLVYACRVFHGM--PVRNDVTWSALIGGFVLCDRMTEAFNLFKDM 297

Query: 100 L-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           L  G     A + + AL+ CA +  L    Q+H+ + + G  AD     +LL +YAK G 
Sbjct: 298 LVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGL 357

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           I  A   FDE+ V+D  S+ AL++G  Q   A EA  +FK+M+   + +P+  T++  + 
Sbjct: 358 INEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNM-EPDIATMVSLIP 416

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC HL A + G   H  +    L +   +CN++IDMYAKCG +D + +VFD +  R  +V
Sbjct: 417 ACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPAR-DVV 475

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +WNTM+  + +HG G  A  LF  M   G  PDDV+++  + AC+H+GLV +G   F++M
Sbjct: 476 SWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTM 535

Query: 339 AN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
            +  G+ P M+HY  +VDLL R G L EA   ++S+ +  D+ +W  LLGAC+++ ++++
Sbjct: 536 THKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDL 595

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
            +  SR + ++G    G+FVLLSN+++A  R+D+   VR   K +  KK PG+S+IE+ G
Sbjct: 596 GKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEING 655

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            +H F   D+SH   R+IY +LD IM  IK+ GY A TS VL D+ EEEKE AL YHSEK
Sbjct: 656 SLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEK 715

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LA+AFG++S +E  +I V KNLR+C DCH  IK ++ V NR IIVRD  RFH FK+G CS
Sbjct: 716 LAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCS 775

Query: 578 CKDYW 582
           C ++W
Sbjct: 776 CGNFW 780



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 165/353 (46%), Gaps = 6/353 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +LA A  +F +I AP    +NA++R  +       A+  YR MLR     +  T  F LK
Sbjct: 49  QLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLK 108

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC+ ++ L     IH+H    G   D  + T L+D+Y +      A+ VF +M +RD+ +
Sbjct: 109 ACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVA 168

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WNA++AG A   +   A+     M+  G  +PN  T++  L      GA  +G  IH Y 
Sbjct: 169 WNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYC 228

Query: 237 REERLDMN---VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
               L+ N   V++  A++DMYAKC  L  A  VF  +  R   VTW+ ++  F +    
Sbjct: 229 LRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VTWSALIGGFVLCDRM 287

Query: 294 PRALELFEQMGRAGV-KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
             A  LF+ M   G+      S  +AL  C     +  G +L   +A  G+  ++    S
Sbjct: 288 TEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNS 347

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
           ++ +  +AG + EA      +++  D + +  LL  C   G  E A +  +K+
Sbjct: 348 LLSMYAKAGLINEATMFFDEIAV-KDTISYGALLSGCVQNGKAEEAFLVFKKM 399



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 7/243 (2%)

Query: 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN 209
           L+ +   G++  A++VFD +   D  ++NALI   +       A+DL++ M +     PN
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM-LRFRVAPN 99

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
           + T    L AC  L   + G  IH +     L  ++ V  A+ID+Y +C     A  VF 
Sbjct: 100 KYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFA 159

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRAL-ELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
            +  R  +V WN M+  +A HG    A+  L +     G++P+  + ++ L      G +
Sbjct: 160 KMPMR-DVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGAL 218

Query: 329 DDGVRLFNSMANCGVKPNMKHY---GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
             G  +        ++ N +      +++D+  +  +L  AC +   + +  D V W  L
Sbjct: 219 FQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VTWSAL 277

Query: 386 LGA 388
           +G 
Sbjct: 278 IGG 280


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/549 (39%), Positives = 320/549 (58%), Gaps = 40/549 (7%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALKACARVLALFETLQ 129
           P+   +N ++ G  HS   + AVL +  M LRG    D  T S  L A   +  L   + 
Sbjct: 213 PNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRG-FEPDGTTISSVLPAVGDLEDLVMGIL 271

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA---- 185
           IH +V++ G ++D  + + L+D+Y K        +VFD+M   D+ S NA I GL+    
Sbjct: 272 IHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQ 331

Query: 186 -------------QG---NLAS---------------EAVDLFKRMKMEGVFKPNEVTVL 214
                        QG   N+ S               EA++LF+ M++ GV KPN VT+ 
Sbjct: 332 VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGV-KPNSVTIP 390

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L ACG++ A   G   H +     +  +V V +A+IDMYAKCG +  +   FD I   
Sbjct: 391 CLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIP-T 449

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           K+LV WN ++  +A+HG    A+E+F+ M R+G KPD +S+   L AC+ +GL ++G   
Sbjct: 450 KNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYY 509

Query: 335 FNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           FNSM++  G++  ++HY  +V LL RAG+L++A  +++ + +  D  +W  LL +C+++ 
Sbjct: 510 FNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHN 569

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           +V + E+A+ KL E+  +N G+++LLSN+YA+   W++V RVR  MKN+ ++K PG S+I
Sbjct: 570 NVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWI 629

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           EV   +H     DKSH +  +I EKLD++  ++K+ GY    + VL D+ E++KE  LC 
Sbjct: 630 EVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCG 689

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEKLAV FGL++T     +QV KNLRIC DCH VIK IS    REI VRD  RFH FK+
Sbjct: 690 HSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKE 749

Query: 574 GACSCKDYW 582
           GACSC DYW
Sbjct: 750 GACSCGDYW 758



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 165/373 (44%), Gaps = 45/373 (12%)

Query: 11  CSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA--LFRQI 68
           C ++   S    +Q  AH+  TG F      + +K++  YA    N + +A A  +   +
Sbjct: 21  CLNSTTASLSQTRQAHAHILKTGLFNDT--HLATKLLSHYA----NNMCFADATLVLDLV 74

Query: 69  NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL 128
             P+   F+ ++   +   +  +A+  + QML      D      A+KACA + AL    
Sbjct: 75  PEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPAR 134

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL-------- 180
           Q+H      GF +D+ + ++L+ +Y K  +I  A +VFD M   D+ SW+AL        
Sbjct: 135 QVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQG 194

Query: 181 ---------------------------IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
                                      IAG     L SEAV +F  M + G F+P+  T+
Sbjct: 195 CVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRG-FEPDGTTI 253

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
              L A G L     G  IH Y+ ++ L  +  V +A+IDMY KC    +  +VFD +  
Sbjct: 254 SSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMD- 312

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
              + + N  +   + +G    +L LF Q+   G++ + VS+ + +  C+  G   + + 
Sbjct: 313 HMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALE 372

Query: 334 LFNSMANCGVKPN 346
           LF  M   GVKPN
Sbjct: 373 LFREMQIAGVKPN 385



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 2/236 (0%)

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           +L +T Q H+H+L+ G   D  L T LL  YA       A  V D +   ++ S++ LI 
Sbjct: 28  SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIY 87

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
             ++ +    A+  F +M   G+   N V +  A+ AC  L A K   ++H        D
Sbjct: 88  AFSKFHQFHHALSTFSQMLTRGLMPDNRV-LPSAVKACAGLSALKPARQVHGIASVSGFD 146

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            +  V ++++ MY KC  +  A  VFD +     +V+W+ +V A+A  G    A  LF +
Sbjct: 147 SDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVDEAKRLFSE 205

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           MG +GV+P+ +S+   +   NH+GL  + V +F  M   G +P+     SV+  +G
Sbjct: 206 MGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVG 261



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 15/306 (4%)

Query: 50  YALSPLNELAYAHALFRQINAPSTN----DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           + LS   ++  +  LFRQ+           + +++   + + +   A+  +R+M     +
Sbjct: 324 FGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVK 383

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            +++T    L AC  + AL      H   LR G   D  +G+ L+D+YAK G I +++  
Sbjct: 384 PNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRIC 443

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FD +  +++  WNA+IAG A    A EA+++F  M+  G  KP+ ++    L+AC   G 
Sbjct: 444 FDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQ-KPDIISFTCVLSACSQSGL 502

Query: 226 WKEGDKIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
            +EG      +  +  ++  V     ++ + ++ G L++A+ +   +        W  ++
Sbjct: 503 TEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALL 562

Query: 285 MAFAVHGD---GPRALE-LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
            +  VH +   G  A E LFE        P +   L+ + A    G+ ++  R+ + M N
Sbjct: 563 SSCRVHNNVSLGEVAAEKLFE---LEPSNPGNYILLSNIYASK--GMWNEVNRVRDMMKN 617

Query: 341 CGVKPN 346
            G++ N
Sbjct: 618 KGLRKN 623


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/577 (36%), Positives = 342/577 (59%), Gaps = 13/577 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           L++ C   GAV    +  +  H+ + G ++ K F + + I  +     L+E   A  LF 
Sbjct: 22  LIKCCLVRGAVQQARL--VHEHVFSNG-YEPKTFLINTLINMYVKFGLLDE---ARNLFD 75

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           ++   +   +  ++   ++S+    A+ +   MLR   R +  T S  L+AC  +L L  
Sbjct: 76  EMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL-- 133

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             Q+H  +L+ G  +D  + + L+D Y+K+GE   A  VF+EM   D+  WN++I G AQ
Sbjct: 134 -RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQ 192

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
            +   E + L+KRMK    F  ++ T+   L AC  L   + G ++H ++   + D +++
Sbjct: 193 NSDGDETLHLYKRMK-RADFVADQSTLTSVLRACTGLALLELGRQVHVHVL--KYDQDLI 249

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           + NA++DMY KCG L+ A  +F  +   K +++W+TM+   A +G    AL+LFE M   
Sbjct: 250 LNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSK 309

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQE 365
           G KP+ ++ L  L AC+HAGLV+DG   F SM  + G+ P  +HYG ++DLLGRAG+L E
Sbjct: 310 GPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDE 369

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A  ++  ++   D V W+ LLGAC+++ +V++A  A+++++++   + G ++LLSN+YA 
Sbjct: 370 AVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYAN 429

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
            ++W+DV  VR+ M+ R VKK PG S+IEV   +H F   D SH +  EI  +L +++ +
Sbjct: 430 SQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQR 489

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           +   GY   T+ VL D+  E+ E++L YHSEKLA+ FGL+S     +I + KNLRIC DC
Sbjct: 490 LMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDC 549

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H   KL+S++ NR I++RD +R+H F+ G CSC DYW
Sbjct: 550 HIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 145/290 (50%), Gaps = 7/290 (2%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           M R    +DA+T S  +K C    A+ +   +H HV  +G+     L  TL+++Y K G 
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGL 66

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           +  A+ +FDEM  R++ SW  +I+  +  NL  +A+D    M  EGV +PN  T    L 
Sbjct: 67  LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGV-RPNMYTYSSVLR 125

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC  L   ++   +H  I +  L+ +V V +A+ID Y+K G    A  VF+ +     LV
Sbjct: 126 ACDGLLNLRQ---LHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEM-ITGDLV 181

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
            WN+++  FA + DG   L L+++M RA    D  +  + L AC    L++ G ++   +
Sbjct: 182 VWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHV 241

Query: 339 ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
                  ++    +++D+  + G L++A  +   +    D++ W T++  
Sbjct: 242 LK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAG 289


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/539 (38%), Positives = 315/539 (58%), Gaps = 33/539 (6%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR-VLALFETLQIHSHV 134
           +NA++ G     +   +   +  M R       +T    L AC +    +   +Q+H  V
Sbjct: 90  WNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRV 149

Query: 135 LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194
           +  G L D  +   L+D+YA+  ++ SA KVFD M VR + SW +L++GLA+     EA 
Sbjct: 150 VGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEAR 209

Query: 195 DLFKRMK----------MEG------------VFK--------PNEVTVLGALAACGHLG 224
           DLF RM           ++G            +F+         +E T++  + AC  LG
Sbjct: 210 DLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLG 269

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A + G+ +  Y+  + + M+  V NA+IDMY+KCG +++A +VF  +  R    TW  ++
Sbjct: 270 ALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKF-TWTAII 328

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GV 343
           +  AV+G    A+E+F +M R    PD+V+++  L AC HAGLVD G   F SM     +
Sbjct: 329 LGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNI 388

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
            PN+ HYG ++DLLGRAG++ EA D +  + M  +  +W TLL AC+++G+ E+ E+ + 
Sbjct: 389 APNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAE 448

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
           +L+E+   N   ++LLSN+YA   RW+DV R+R A+  + +KK PG S IE+ G+IH+F 
Sbjct: 449 RLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFV 508

Query: 464 TSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFG 523
             D+SH   +EIY KL+ I+  +   GY    + V  ++ E+EK+  L +HSEKLA+AF 
Sbjct: 509 AGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFA 568

Query: 524 LISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           L+S+   T I++ KNLR+C DCH+ IKLIS++Y RE++VRDR RFH F+ G CSCKDYW
Sbjct: 569 LLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 2/243 (0%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
            L+ L ++  A  LF ++    T  + A++ G   +++   A+  +R+M   +  +D  T
Sbjct: 198 GLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFT 257

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
               + ACA++ AL     +  ++ R G   DA +G  L+D+Y+K G I  A  VF  M 
Sbjct: 258 MVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMH 317

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            RD  +W A+I GLA      EA+++F RM +     P+EVT +G L AC H G   +G 
Sbjct: 318 HRDKFTWTAIILGLAVNGYEEEAIEMFHRM-IRVSETPDEVTFIGVLTACTHAGLVDKGR 376

Query: 231 KIH-EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
           +     I    +  NVV    +ID+  + G + +A +  D +    +   W T++ A  V
Sbjct: 377 EFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRV 436

Query: 290 HGD 292
           HG+
Sbjct: 437 HGN 439


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/572 (38%), Positives = 321/572 (56%), Gaps = 38/572 (6%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH- 104
           ++  Y      ELA +  +F  +   S   +N ++ G   +     A+ ++ +ML  S  
Sbjct: 419 MVSLYTHQGRMELAVS--MFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSM 476

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGF-----LADALLGT------------ 147
             DA T +  L ACA +  L    Q+HS++LR G      + +AL+ T            
Sbjct: 477 EPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARR 536

Query: 148 ----------------TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
                            LL+ Y K+G+   A+++FD M  RD+ +W A+I G  Q     
Sbjct: 537 IMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQND 596

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           EA++LF+ M + G  +PN  T+   L+AC  L     G +IH        + +V V NA+
Sbjct: 597 EAMELFRSMILIGP-EPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAI 655

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           I +YA+ G +  A  VFD I  RK  +TW +M++A A HG G +A+ LFE+M R GVKPD
Sbjct: 656 ITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPD 715

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
            ++Y+  L AC HAG VD G R +  M N  G+ P M HY  +VDL  RAG L EA + +
Sbjct: 716 HITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFI 775

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
           + + +  D V+W +LL AC++  + ++AE+A+ KL+ +  +N G +  L+N+Y+A  RW+
Sbjct: 776 QRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWN 835

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
           D  R+ K  K++ VKK  GFS+  V G +H F   D  H +   IY K  E+  +IK+ G
Sbjct: 836 DAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAG 895

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
           +    + VLHD+ +E KE  L  HSEKLA+AFGLIST E T++++ KNLR+C DCH  IK
Sbjct: 896 FVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIK 955

Query: 551 LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            ISK  +REIIVRD  RFH F+DG CSCKDYW
Sbjct: 956 FISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/430 (21%), Positives = 174/430 (40%), Gaps = 67/430 (15%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + ++  YA S    L  AH +F ++       +  ++ GL  S +  +AV  +  M+   
Sbjct: 285 NSLLSLYAKS--GRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEG 342

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
                 T +  L +CA + A     ++H  V++ G  +   +  ++L +Y K G+  +A+
Sbjct: 343 FAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETAR 402

Query: 164 KVFDEMGVRD-------------------------------IASWNALIAGLAQGNLASE 192
            VF+ M VR                                I SWN +IAG  Q  L   
Sbjct: 403 AVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGM 462

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL----------- 241
           A+  F RM      +P+  TV   L+AC +L   K G ++H YI    +           
Sbjct: 463 ALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALI 522

Query: 242 ----------------------DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
                                 D+NV+   A+++ Y K G   +A E+FD I   + ++ 
Sbjct: 523 STYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFD-IMNNRDVIA 581

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           W  M++ +  +G    A+ELF  M   G +P+  +  A L AC     +D G ++     
Sbjct: 582 WTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAI 641

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
               + ++    +++ +  R+G +  A  +   +    + + W +++ A   +G  E A 
Sbjct: 642 RSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAV 701

Query: 400 IASRKLVEMG 409
           +   ++V +G
Sbjct: 702 VLFEEMVRVG 711



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 143/320 (44%), Gaps = 37/320 (11%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           +A    +LL +YAK G +  A  VF EM  RD  SW  +I GL +     +AV  F  M 
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            EG F P++ T+   L++C  + A   G K+H ++ +  L   V V N+V+ MY KCG  
Sbjct: 340 SEG-FAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDA 398

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           + A  VF+ ++ R S+ +WN MV  +   G    A+ +FE M    V+   VS+   +  
Sbjct: 399 ETARAVFERMQVR-SVSSWNVMVSLYTHQGRMELAVSMFENM----VERSIVSWNTIIAG 453

Query: 322 CNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM- 379
            N  GL    ++ F+ M +   ++P+     SV+           AC  ++ + MG  M 
Sbjct: 454 YNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLS----------ACANLRMLKMGKQMH 503

Query: 380 ------------VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
                        +   L+      G VE A    R++++       + +  + L   Y 
Sbjct: 504 SYILRTGMPCSSQIMNALISTYAKSGSVETA----RRIMDQAVVADLNVISFTALLEGYV 559

Query: 428 RWDDVGRVRK---AMKNRDV 444
           +  D  + R+    M NRDV
Sbjct: 560 KLGDTKQAREIFDIMNNRDV 579


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/437 (45%), Positives = 276/437 (63%), Gaps = 3/437 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            T++  YA+ G+I  A+  FD M  RD  SW A+IAG AQ     EA+ LF  MK +G  
Sbjct: 332 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE- 390

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           + N  T    L+ C  + A + G ++H  + +  L+    V NA++ MY KCG +D A+ 
Sbjct: 391 RLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYI 450

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ I+  K +V+WNTM+  +A HG G  AL LFE M + G+ PDDV+ +  L AC+H G
Sbjct: 451 VFEGIE-EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTG 509

Query: 327 LVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LVD G   F SM  + G+  N KHY  ++DLLGRAGRL +A +++K++    D   W  L
Sbjct: 510 LVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGAL 569

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGA +++G+ E+ E A++ + EM  +N G +VLLSNLYAA  RW DVGR+R  M++R VK
Sbjct: 570 LGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVK 629

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           KVPG+S++EV   IH F   D  H +   IY  L+E+  K+K+ GY + T  VLHD+ EE
Sbjct: 630 KVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEE 689

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EK + L YHSEKLAVAFG+++      I+V KNLR+C DCH+ +K ISK+  R II+RD 
Sbjct: 690 EKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDS 749

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F  G CSC DYW
Sbjct: 750 HRFHHFNGGQCSCGDYW 766



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 11/293 (3%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           ++A A   F ++    +  + A++ G A S     A+  + +M R   R +  T +  L 
Sbjct: 343 DIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLS 402

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            CA + AL    Q+H  V++ G  +   +G  LL +Y K G I  A  VF+ +  +++ S
Sbjct: 403 TCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVS 462

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK-IHEY 235
           WN +IAG A+     EA+ LF+ MK  G+  P++VT++G L+AC H G   +G +  +  
Sbjct: 463 WNTMIAGYARHGFGKEALMLFESMKKTGIL-PDDVTMVGVLSACSHTGLVDKGTEYFYSM 521

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD--- 292
            ++  +  N      +ID+  + G LD A  +  N+       TW  ++ A  +HG+   
Sbjct: 522 TQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTEL 581

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHA-GLVDDGVRLFNSMANCGVK 344
           G +A ++  +M     +PD+      L     A G   D  R+   M + GVK
Sbjct: 582 GEKAAKMIFEM-----EPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVK 629



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 14/206 (6%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           ++  Y K   +V A+ +FD M  RD  SWN +I+G AQ     EA  LF+   +  VF  
Sbjct: 210 MMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVF-- 267

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
              T    ++     G   E  ++ + + E+    N V  NA+I  Y +C  +D+A E+F
Sbjct: 268 ---TWTAMVSGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAGYVQCKRMDQARELF 320

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
           + + C +++ +WNTM+  +A +GD  +A   F++M     + D +S+ A +     +G  
Sbjct: 321 EAMPC-QNVSSWNTMITGYAQNGDIAQARNFFDRM----PQRDSISWAAIIAGYAQSGYG 375

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVV 354
           ++ + LF  M   G + N   + S +
Sbjct: 376 EEALHLFVEMKRDGERLNRSTFTSTL 401



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 122/255 (47%), Gaps = 17/255 (6%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +   T++  YA+ GE++ A+++F+E  VRD+ +W A+++G  Q  +  EA  +F    
Sbjct: 234 DEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVF---- 289

Query: 202 MEGVFKPNEVT---VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            +G+ + N V+   ++     C      K  D+  E   E     NV   N +I  YA+ 
Sbjct: 290 -DGMPEKNSVSWNAIIAGYVQC------KRMDQARELF-EAMPCQNVSSWNTMITGYAQN 341

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G + +A   FD +  R S ++W  ++  +A  G G  AL LF +M R G + +  ++ + 
Sbjct: 342 GDIAQARNFFDRMPQRDS-ISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTST 400

Query: 319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
           L  C     ++ G ++   +   G++       +++ +  + G + +A  + + +    +
Sbjct: 401 LSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEE-KE 459

Query: 379 MVLWQTLLGACQLYG 393
           +V W T++     +G
Sbjct: 460 VVSWNTMIAGYARHG 474



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 118/238 (49%), Gaps = 19/238 (7%)

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           +A+ +FD+M  RD+ SWNA+++G AQ     EA ++F  M  +     N ++  G LAA 
Sbjct: 129 AARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK-----NSISWNGMLAAY 183

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
              G  ++  ++     E + D  ++  N ++  Y K   L  A  +FD +  R   V+W
Sbjct: 184 VQNGRIEDARRLF----ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDE-VSW 238

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           NTM+  +A +G+   A  LFE+   + V+ D  ++ A +      G++D+  R+F+ M  
Sbjct: 239 NTMISGYAQNGELLEAQRLFEE---SPVR-DVFTWTAMVSGYVQNGMLDEARRVFDGMP- 293

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              + N   + +++    +  R+ +A ++ +++    ++  W T++      GD+  A
Sbjct: 294 ---EKNSVSWNAIIAGYVQCKRMDQARELFEAMPC-QNVSSWNTMITGYAQNGDIAQA 347



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 10/161 (6%)

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
           AD +     +  + + G+  SA ++F+ M  R   SWNA+I+G    +    A  LF++M
Sbjct: 47  ADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKM 106

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
               +   N +     ++ C      +    + + + E     +VV  NA++  YA+ G 
Sbjct: 107 PTRDLVSWNVM-----ISGCVRYRNLRAARLLFDQMPER----DVVSWNAMLSGYAQNGY 157

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + +A E+FD + C+ S ++WN M+ A+  +G    A  LFE
Sbjct: 158 VKEAKEIFDEMPCKNS-ISWNGMLAAYVQNGRIEDARRLFE 197


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/525 (39%), Positives = 315/525 (60%), Gaps = 21/525 (4%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           LA A  LF +++  S   +  ++ G   S +       + +ML      + +T    +  
Sbjct: 242 LASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITE 301

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C  V  L      H+++LR+GF     L T L+D+Y K G++  A+ +F+ +  +D+  W
Sbjct: 302 CGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIW 361

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           + LI+  A  +   +  +LF  M    V KPN VT++  L+ C   GA   G   H YI 
Sbjct: 362 SVLISAYAHVSCMDQVFNLFVEMLNNDV-KPNNVTMVSLLSLCAEAGALDLGKWTHAYIN 420

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
              L+++V++  A+I+MYAKCG +  A  +F N   ++ +  WNTM+  F++HG G  AL
Sbjct: 421 RHGLEVDVILETALINMYAKCGDVTIARSLF-NEAMQRDIRMWNTMMAGFSMHGCGKEAL 479

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           ELF +M   GV+P+D+++++   AC+H+GL                   M+HYG +VDLL
Sbjct: 480 ELFSEMESHGVEPNDITFVSIFHACSHSGL-------------------MEHYGCLVDLL 520

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           GRAG L EA +I++++ M  + ++W  LL AC+L+ ++ + E+A+RK++E+   NCG  V
Sbjct: 521 GRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSV 580

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           L SN+YA+ +RW+DV  VR+AM +  +KK PG S+IEV G +H F + DK+  +  ++YE
Sbjct: 581 LKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYE 640

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
            + E+  K++E GY   T+ VL +I EEEKE+AL YHSEKLA AFGLIST+  T I++ K
Sbjct: 641 MVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATAFGLISTAPGTPIRIVK 700

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLRIC DCH   KL+SK+Y R IIVRDR RFH F +G CSC  YW
Sbjct: 701 NLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 162/354 (45%), Gaps = 9/354 (2%)

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFALKACAR 120
           H  F Q +     ++N ++    ++  P  +   Y  M      + D       LKACA+
Sbjct: 41  HPFFSQSHFTPEANYNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQ 100

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             +     ++H    ++GF +D  +   L+++Y K G +VSA+ VFD+M  RD+ SW  +
Sbjct: 101 ASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTM 160

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +    +     EA+ L + M+  GV K + V ++  +A  G+L   K G  +H YI    
Sbjct: 161 LGCYVRSKAFGEALRLVREMQFVGV-KLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNV 219

Query: 241 LD--MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            D  M V +  A+IDMY K G L  A  +FD +  ++S+V+W  M+             +
Sbjct: 220 GDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLS-KRSVVSWTVMIAGCIRSCRLDEGAK 278

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
            F +M    + P++++ L+ +  C   G +D G      +   G   ++    +++D+ G
Sbjct: 279 NFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYG 338

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           + G++  A  +   V    D+ +W  L+ A   Y  V   +      VEM +N+
Sbjct: 339 KCGQVGYARALFNGVK-KKDVKIWSVLISA---YAHVSCMDQVFNLFVEMLNND 388



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 22/247 (8%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + +I+ Y      ++ YA ALF  +       ++ ++   AH S        + +ML   
Sbjct: 331 TALIDMYG--KCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNND 388

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
            + + +T    L  CA   AL      H+++ RHG   D +L T L+++YAK G++  A+
Sbjct: 389 VKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIAR 448

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
            +F+E   RDI  WN ++AG +      EA++LF  M+  GV +PN++T +    AC H 
Sbjct: 449 SLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGV-EPNDITFVSIFHACSHS 507

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
           G       +  Y               ++D+  + G LD+A  + +N+  R + + W  +
Sbjct: 508 GL------MEHY-------------GCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGAL 548

Query: 284 VMAFAVH 290
           + A  +H
Sbjct: 549 LAACKLH 555


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/594 (36%), Positives = 340/594 (57%), Gaps = 38/594 (6%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           H++ +  H   T   Q     V  +++  Y    +N + +A  LFR    P+   + +++
Sbjct: 42  HVQSIHCHAIKTRTSQDPF--VAFELLRVYC--KVNYIDHAIKLFRCTQNPNVYLYTSLI 97

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
            G       T+A+  + QM+R    +D    +  LKAC    AL    ++H  VL+ G  
Sbjct: 98  DGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLG 157

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFD-------------------------------EM 169
            D  +   L+++Y K G +  A+K+FD                               EM
Sbjct: 158 LDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEM 217

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
           G RD   W  +I GL +    +  +++F+ M+++GV +PNEVT +  L+AC  LGA + G
Sbjct: 218 GTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGV-EPNEVTFVCVLSACAQLGALELG 276

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
             IH Y+R+  +++N  V  A+I+MY++CG +D+A  +FD ++  K + T+N+M+   A+
Sbjct: 277 RWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRV-KDVSTYNSMIGGLAL 335

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMK 348
           HG    A+ELF +M +  V+P+ ++++  L AC+H GLVD G  +F SM    G++P ++
Sbjct: 336 HGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVE 395

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
           HYG +VD+LGR GRL+EA D +  + +  D  +  +LL AC+++ ++ M E  ++ L E 
Sbjct: 396 HYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEH 455

Query: 409 GSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKS 468
              + G F++LSN YA+  RW     VR+ M+   + K PG S IEV   IH+FF+ D  
Sbjct: 456 YRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLR 515

Query: 469 HVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTS 528
           H + + IY+KL+E+ +  K  GY   T   LHDI +E+KE AL  HSE+LA+ +GL+ST 
Sbjct: 516 HPERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAICYGLVSTE 575

Query: 529 EATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             T+++V KNLRIC DCH +IKLI+K+  R+I+VRDR RFH F++G CSCKDYW
Sbjct: 576 AYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 9/188 (4%)

Query: 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK--SLVTWNTMV 284
           K    IH +  + R   +  V   ++ +Y K   +D A ++F   +C +  ++  + +++
Sbjct: 41  KHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLF---RCTQNPNVYLYTSLI 97

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
             F   G    A+ LF QM R  V  D+ +  A L AC     +  G  +   +   G+ 
Sbjct: 98  DGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLG 157

Query: 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRK 404
            +      +V+L G+ G L++A  +   +    D+V    ++G+C    D  M E A   
Sbjct: 158 LDRSIALKLVELYGKCGVLEDARKMFDGMPE-RDVVACTVMIGSCF---DCGMVEEAIEV 213

Query: 405 LVEMGSNN 412
             EMG+ +
Sbjct: 214 FNEMGTRD 221


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/574 (37%), Positives = 351/574 (61%), Gaps = 13/574 (2%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           L+ LL+  SS        +K++ A +  TG F  K   + ++++E   L  + ++ YA  
Sbjct: 13  LSELLRASSSKPK----QLKKIHAVVIRTG-FSEK-NSLLTQLLENLVL--VGDMCYARQ 64

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++  P    +N + +G   +  P  +VL Y++M     R D  T  F +KA +++  
Sbjct: 65  VFDEMPKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGV 124

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L   + +H+HVL++GF    ++ T L+ +Y K GE+ SA+ +F+ M V+D+ +WNA IA 
Sbjct: 125 LPCGVSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAV 184

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q   ++ A++ F +M  + V + +  TV+  L+ACG LG+   G++I++  R+E ++ 
Sbjct: 185 CVQTGNSAIALEYFNKMCADAV-QFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIEC 243

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N++V NA +DM+ KCG  + A  +FD++K ++++V+W+TM++ +A++GD   AL LF  M
Sbjct: 244 NIIVENARLDMHLKCGSTEAARVLFDDMK-QRNVVSWSTMIVGYAMNGDSGEALALFTMM 302

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG---VKPNMKHYGSVVDLLGRA 360
              G++P+ V++L  L AC+HAGLV++G R F+ M       ++P  +HY  +VDLLGR+
Sbjct: 303 QNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRS 362

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L+EA + +K + +  D  +W  LLGAC ++ D+ + +  +  LVE   +     VLLS
Sbjct: 363 GLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLS 422

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YAA  +WD V +VR  M+    KKV  +S +E  G IH F   D SH + + IYEKLD
Sbjct: 423 NIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDISHPQSKAIYEKLD 482

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           EI+ KI+  GY   T  V HD+  EEKE++L +HSEKLA+AFGLI+      I+V KNLR
Sbjct: 483 EILKKIRNMGYVPDTGSVFHDVEMEEKESSLSHHSEKLAIAFGLINGRAGHPIRVMKNLR 542

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
            C DCH   K +S++ +REII+RD+ RFH F++G
Sbjct: 543 TCDDCHVFSKFVSRLTSREIIMRDKNRFHHFRNG 576


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/579 (36%), Positives = 340/579 (58%), Gaps = 12/579 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQ-LQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           LL+ CS    +SH+ + + + A +   G F + +F V++ +I  YA      L  A  +F
Sbjct: 125 LLKACS---GLSHLQMGRFVHAQVFRLG-FDADVF-VQNGLIALYA--KCRRLGSARTVF 177

Query: 66  RQINAPSTN--DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
             +  P      + A++   A + +P  A+  +  M +   + D +     L A   +  
Sbjct: 178 EGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQD 237

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L +   IH+ V++ G   +  L  +L  +YAK G++ +AK +FD+M   ++  WNA+I+G
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            A+   A EA+D+F  M  + V +P+ +++  A++AC  +G+ ++   ++EY+       
Sbjct: 298 YAKNGYAREAIDMFHEMINKDV-RPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRD 356

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           +V + +A+IDM+AKCG ++ A  VFD    R  +V W+ M++ + +HG    A+ L+  M
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDR-DVVVWSAMIVGYGLHGRAREAISLYRAM 415

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
            R GV P+DV++L  L ACNH+G+V +G   FN MA+  + P  +HY  V+DLLGRAG L
Sbjct: 416 ERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHL 475

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            +A +++K + +   + +W  LL AC+ +  VE+ E A+++L  +  +N G +V LSNLY
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLY 535

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           AA   WD V  VR  MK + + K  G S++EV G +  F   DKSH ++ EI  +++ I 
Sbjct: 536 AAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIE 595

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            ++KE G+ A     LHD+ +EE E  LC HSE++A+A+GLIST + T +++ KNLR C 
Sbjct: 596 SRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACV 655

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +CH   KLISK+ +REI+VRD  RFH FKDG CSC DYW
Sbjct: 656 NCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 205/414 (49%), Gaps = 12/414 (2%)

Query: 14  NGAVSHIHIKQLQAHLTTTG-QFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPS 72
           + A     +KQ+ A L   G QF   L    +K+I  +A S   ++ +A  +F  +  P 
Sbjct: 29  DSATHKAQLKQIHARLLVLGLQFSGFLI---TKLI--HASSSFGDITFARQVFDDLPRPQ 83

Query: 73  TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS 132
              +NA++RG + ++   +A+L Y  M       D+ T    LKAC+ +  L     +H+
Sbjct: 84  IFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHA 143

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGLAQGNLA 190
            V R GF AD  +   L+ +YAK   + SA+ VF+ + +  R I SW A+++  AQ    
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
            EA+++F  M+   V KP+ V ++  L A   L   K+G  IH  + +  L++   +  +
Sbjct: 204 MEALEIFSHMRKMDV-KPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           +  MYAKCG +  A  +FD +K   +L+ WN M+  +A +G    A+++F +M    V+P
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKS-PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           D +S  +A+ AC   G ++    ++  +     + ++    +++D+  + G + E   +V
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV-EGARLV 380

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
              ++  D+V+W  ++    L+G    A I+  + +E G  +  D   L  L A
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREA-ISLYRAMERGGVHPNDVTFLGLLMA 433


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/568 (40%), Positives = 341/568 (60%), Gaps = 21/568 (3%)

Query: 24  QLQAHLTTTGQFQSKLFP-VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           QL AH+  TG   S+  P  RS +I  YA   L+   +A  +F ++  P T  +NA++ G
Sbjct: 75  QLHAHVIRTG---SQPDPYTRSSLINTYAKCSLHH--HARKVFDEMPNP-TICYNAMISG 128

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRS-------DALTCSFALKACARVLALFETLQIHSHVL 135
            + +SKP +AV  +R+M R            +A+T    +  C+    L   + +H   +
Sbjct: 129 YSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCV 188

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R GF+ D  +  +L+ +Y K GE+  A+KVFDEM VRD+ +WNA+I+G AQ   A   ++
Sbjct: 189 RFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLE 248

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           ++  MK+ GV   + VT+LG ++AC +LGA   G ++   I       N  + NA+++MY
Sbjct: 249 VYSEMKLSGV-SADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMY 307

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           A+CG L +A EVFD     KS+V+W  ++  + +HG G  ALELF++M  + V+PD   +
Sbjct: 308 ARCGNLTRAREVFDR-SGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVF 366

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           ++ L AC+HAGL D G+  F  M    G++P  +HY  VVDLLGRAGRL+EA +++KS+ 
Sbjct: 367 VSVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMK 426

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +  D  +W  LLGAC+++ + E+AE+A + +VE+   N G +VLLSN+Y      + V R
Sbjct: 427 VKPDGAVWGALLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSR 486

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VR  M+ R ++K PG+SY+E  G ++ F++ D SH + ++IY  LDE+   +KE  +   
Sbjct: 487 VRVMMRERKLRKDPGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELESLVKEV-HPPN 545

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
             C       EE       HSEKLA+AF L++T   T I V KNLR+C DCH  IKL+SK
Sbjct: 546 EKC---QGRSEELLIGTGVHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSK 602

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + NR+ IVRD  RFH F+DG CSCKDYW
Sbjct: 603 IVNRQFIVRDATRFHHFRDGICSCKDYW 630



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 149/304 (49%), Gaps = 8/304 (2%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIH 131
            T  +N  LR L+   +   A+  YR MLR S   +  T  F LK+CA +       Q+H
Sbjct: 18  PTTAWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLH 77

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
           +HV+R G   D    ++L++ YAK      A+KVFDEM    I  +NA+I+G +  +   
Sbjct: 78  AHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPTIC-YNAMISGYSFNSKPL 136

Query: 192 EAVDLFKRMKME---GV---FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
            AV LF++M+ E   G+      N VT+L  ++ C        G  +H          ++
Sbjct: 137 HAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDL 196

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V N+++ MY KCG ++ A +VFD +  R  L+TWN M+  +A +G     LE++ +M  
Sbjct: 197 AVANSLVTMYVKCGEVELARKVFDEMLVR-DLITWNAMISGYAQNGHARCVLEVYSEMKL 255

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           +GV  D V+ L  + AC + G    G  +   +   G   N     ++V++  R G L  
Sbjct: 256 SGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTR 315

Query: 366 ACDI 369
           A ++
Sbjct: 316 AREV 319


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/523 (40%), Positives = 310/523 (59%), Gaps = 4/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++   +   +NA++ G+A       A+  + QM R     DA T    L A   
Sbjct: 389 AQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVG 448

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             AL    ++HS+ +  G L D  +G  L+ +YAK G  + AK+VFD+M  R++ +W  +
Sbjct: 449 EEALEWVKEVHSYAIDAG-LVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVM 507

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I+GLAQ     EA  LF +M  EG+  P+  T +  L+AC   GA +   ++H +     
Sbjct: 508 ISGLAQHGCGHEAFSLFLQMLREGIV-PDATTYVSILSACASTGALEWVKEVHSHAVNAG 566

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L  ++ V NA++ MYAKCG +D A  VFD++   + + +W  M+   A HG G  AL+LF
Sbjct: 567 LVSDLRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQHGRGLDALDLF 625

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
            +M   G KP+  S++A L AC+HAGLVD+G R F S+  + G++P M+HY  +VDLLGR
Sbjct: 626 VKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGR 685

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG+L+EA   + ++ +      W  LLGAC  YG++EMAE A+++ +++   +   +VLL
Sbjct: 686 AGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLL 745

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YAA   W+    VR  M+ R ++K PG S+IEV   IH F   D SH + +EIY KL
Sbjct: 746 SNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKL 805

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
            +++ ++K  GY   T  VL +  +E KE ALC HSEKLA+ +GL+ T     I+V+KNL
Sbjct: 806 KDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNL 865

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH   K ISKV  REI+ RD  RFH FKDG CSC DYW
Sbjct: 866 RVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 185/385 (48%), Gaps = 11/385 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ++L+ C S   VS    K++ AH+  +G FQS +  V + ++  Y       +  A  +F
Sbjct: 35  SILKACCS--PVSLKWGKKIHAHIIQSG-FQSDV-RVETALVNMYV--KCGSIDDAQLIF 88

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            ++   +   +  ++ GLAH  +   A   + QM R     ++ T    L A A   AL 
Sbjct: 89  DKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALE 148

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              ++HSH +  G   D  +G  L+ +YAK G I  A+ VFD M  RDI SW  +I GLA
Sbjct: 149 WVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLA 208

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL--AACGHLGAWKEGDKIHEYIREERLDM 243
           Q     EA  LF +M+  G   PN  T L  L  +A    GA +   ++H++  +     
Sbjct: 209 QHGRGQEAFSLFLQMERGGCL-PNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFIS 267

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           ++ V NA+I MYAKCG +D A  VFD + C + +++WN M+   A +G G  A  +F +M
Sbjct: 268 DLRVGNALIHMYAKCGSIDDARLVFDGM-CDRDVISWNAMIGGLAQNGCGHEAFTIFLKM 326

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
            + G  PD  +YL+ L      G  +    +       G+  +++   + V +  R G +
Sbjct: 327 QQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSI 386

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGA 388
            +A  I   +++  ++  W  ++G 
Sbjct: 387 DDAQLIFDKLAV-RNVTTWNAMIGG 410



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 189/382 (49%), Gaps = 10/382 (2%)

Query: 12  SSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAP 71
           +S GA+  +  K++  H    G F S L  V + +I  YA      +  A  +F  +   
Sbjct: 245 TSTGALEWV--KEVHKHAGKAG-FISDL-RVGNALIHMYA--KCGSIDDARLVFDGMCDR 298

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIH 131
               +NA++ GLA +     A   + +M +     D+ T    L       A     ++H
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVH 358

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
            H +  G ++D  +G+  + +Y + G I  A+ +FD++ VR++ +WNA+I G+AQ     
Sbjct: 359 KHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGR 418

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           EA+ LF +M+ EG F P+  T +  L+A     A +   ++H Y  +  L +++ V NA+
Sbjct: 419 EALSLFLQMRREGFF-PDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNAL 476

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           + MYAKCG    A +VFD++   +++ TW  M+   A HG G  A  LF QM R G+ PD
Sbjct: 477 VHMYAKCGNTMYAKQVFDDM-VERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPD 535

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
             +Y++ L AC   G ++    + +   N G+  +++   ++V +  + G + +A  +  
Sbjct: 536 ATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFD 595

Query: 372 SVSMGTDMVLWQTLLGACQLYG 393
            + +  D+  W  ++G    +G
Sbjct: 596 DM-LERDVYSWTVMIGGLAQHG 616



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 173/362 (47%), Gaps = 6/362 (1%)

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           ++ G A      +A+  Y QM R   + + +T    LKAC   ++L    +IH+H+++ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
           F +D  + T L+++Y K G I  A+ +FD+M  R++ SW  +I GLA      EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
           +M+ EG F PN  T +  L A    GA +   ++H +     L +++ V NA++ MYAK 
Sbjct: 121 QMQREG-FIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKS 179

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G +D A  VFD +   + + +W  M+   A HG G  A  LF QM R G  P+  +YL+ 
Sbjct: 180 GSIDDARVVFDGM-VERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSI 238

Query: 319 L--CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
           L   A    G ++    +       G   +++   +++ +  + G + +A  +V      
Sbjct: 239 LNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDA-RLVFDGMCD 297

Query: 377 TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG-SNNCGDFVLLSNLYAAYERWDDVGRV 435
            D++ W  ++G     G    A     K+ + G   +   ++ L N + +   W+ V  V
Sbjct: 298 RDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEV 357

Query: 436 RK 437
            K
Sbjct: 358 HK 359



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 127/258 (49%), Gaps = 8/258 (3%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           YA  +F  +   +   +  ++ GLA       A   + QMLR     DA T    L ACA
Sbjct: 488 YAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACA 547

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
              AL    ++HSH +  G ++D  +G  L+ +YAK G +  A++VFD+M  RD+ SW  
Sbjct: 548 STGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTV 607

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I GLAQ     +A+DLF +MK+EG FKPN  + +  L+AC H G   EG +    + ++
Sbjct: 608 MIGGLAQHGRGLDALDLFVKMKLEG-FKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQD 666

Query: 240 R-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             ++  +     ++D+  + G L++A     N+        W  ++ A   +G+    LE
Sbjct: 667 YGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGN----LE 722

Query: 299 L--FEQMGRAGVKPDDVS 314
           +  F    R  +KP   S
Sbjct: 723 MAEFAAKERLKLKPKSAS 740


>gi|297739350|emb|CBI29340.3| unnamed protein product [Vitis vinifera]
          Length = 434

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/286 (67%), Positives = 230/286 (80%), Gaps = 3/286 (1%)

Query: 211 VTVLGALAACGHL-GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
            T++ A A CG L  A +  D+I   +R+  LD+NV VCNAVIDMYAKCG  DK F VF 
Sbjct: 139 TTLIDAYAKCGDLDSAQRVFDEIP--LRDMDLDINVQVCNAVIDMYAKCGFADKGFRVFS 196

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
            + C KS+VTWNTM+MAFA+HGDG RALELFE+MG+  V+ D V+YLA LCACNHAGLV+
Sbjct: 197 TMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVE 256

Query: 330 DGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           +GVRLF+ M   GV  N+KHYGSVVDLLGRAGRL EA  I+ S+ +  D+VLWQ+LLGAC
Sbjct: 257 EGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLLGAC 316

Query: 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPG 449
           + YG+VEMAE+ASRKLVEMGSN+CGDFVLLSN+YAA ERW+DVGRVR+AMK+RDV+KVPG
Sbjct: 317 KTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRKVPG 376

Query: 450 FSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           FSYIEV GVIHKF   D+SH  WREIY KLDEI F+IK +GY A T
Sbjct: 377 FSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRFRIKAFGYVAET 422



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 181/331 (54%), Gaps = 49/331 (14%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE-LA 59
           MA +++++QKC++       HIKQ+QAHL TTGQF  ++ P R++++E  ALSP    L 
Sbjct: 1   MAFMDSIIQKCTTLS-----HIKQVQAHLLTTGQFNLRISPSRTRLLEHCALSPSPAYLP 55

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           YA  + R I  PSTNDFNA+LRGLA    PT+A+ +   +L      DALT SF+L A A
Sbjct: 56  YAAHIHRHIPHPSTNDFNALLRGLARGPHPTHALTFLSTILH----PDALTFSFSLIASA 111

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD------ 173
           R LAL ET QIHSH+LR G  AD LLGTTL+D YAK G++ SA++VFDE+ +RD      
Sbjct: 112 RALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDMDLDIN 171

Query: 174 --------------------------------IASWNALIAGLAQGNLASEAVDLFKRMK 201
                                           + +WN +I   A       A++LF+ M 
Sbjct: 172 VQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMG 231

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
              V + + VT L  L AC H G  +EG ++ + +    ++ NV    +V+D+  + G L
Sbjct: 232 KTQV-EMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRL 290

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            +A+ + +++     +V W +++ A   +G+
Sbjct: 291 GEAYRIINSMPIVPDVVLWQSLLGACKTYGN 321


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/515 (40%), Positives = 328/515 (63%), Gaps = 11/515 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F +I       +NA++ G A +     A+  +++M++ + + D  T +  + ACA+
Sbjct: 160 AQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQ 219

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             ++    Q+HS +  HGF ++  +   L+D+Y+K GE+ +A ++ + +  +D+ SWN L
Sbjct: 220 SGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTL 279

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G    NL  EA+ LF+ M   G   PN+VT+L  L AC HLGA   G  IH YI +++
Sbjct: 280 IGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSILPACAHLGAIDIGRWIHVYI-DKK 337

Query: 241 LDMNVVVCNA------VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           L   VVV NA      +IDMYAKCG +D A +V D+    +SL TWN M+  FA+HG   
Sbjct: 338 LK-GVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRAN 396

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSV 353
            A ++F +M + G++PDD++++  L AC+H+G++D G  +F SM  +  + P ++HYG +
Sbjct: 397 AAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCM 456

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           +DLLG +G  +EA +++ ++ M  D V+W +LL AC+++G++E+ E  ++KL+++   N 
Sbjct: 457 IDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENP 516

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK-VPGFSYIEVGGVIHKFFTSDKSHVKW 472
           G +VLLSN+YA   +W++V ++R  + ++ +KK VPG S IE+  V+H+F   DK H + 
Sbjct: 517 GSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQN 576

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
           REIY  L+E+   ++E G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   T 
Sbjct: 577 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 636

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           + + KNLR+CR+CH+  KLISK+Y REII RDR R
Sbjct: 637 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 205/406 (50%), Gaps = 43/406 (10%)

Query: 39  LFP----VRSKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAV 93
           LFP      S+++EF  LSP  + L YA ++F  I  P+   +N + RG A SS P +A+
Sbjct: 1   LFPNTHYAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSAL 60

Query: 94  LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153
             Y  M+      +  T  F LK+CA+     E  QIH HVL+ GF  D  + T+L+ +Y
Sbjct: 61  KLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMY 120

Query: 154 AKVGE-------------------------------IVSAKKVFDEMGVRDIASWNALIA 182
           A+ G                                I SA+K+FDE+ ++D+ SWNA+I+
Sbjct: 121 AQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMIS 180

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G A+     +A++LFK M M+   KP+E T+   ++AC   G+ + G ++H +I +    
Sbjct: 181 GYAETGNYKKALELFKEM-MKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFG 239

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            N+ + NA+ID+Y+KCG ++ A E+ + +   K +++WNT++  +        AL LF++
Sbjct: 240 SNLKIVNALIDLYSKCGEVETACELLEGLS-NKDVISWNTLIGGYTHMNLYKEALLLFQE 298

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDG----VRLFNSMANCGVKPNMKHYGSVVDLLG 358
           M R+G  P+DV+ L+ L AC H G +D G    V +   +    V        S++D+  
Sbjct: 299 MLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYA 358

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASR 403
           + G +  A  +  S +    +  W  ++    ++G    A +I SR
Sbjct: 359 KCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSR 404



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 157/317 (49%), Gaps = 23/317 (7%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           + +  ++  C+ +G++     +Q+ + +   G F S L  + + +I+ Y  S   E+  A
Sbjct: 208 STMATVVSACAQSGSIELG--RQVHSWINDHG-FGSNL-KIVNALIDLY--SKCGEVETA 261

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             L   ++      +N ++ G  H +    A+L +++MLR     + +T    L ACA +
Sbjct: 262 CELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 321

Query: 122 LALFETLQIHSHV---LRHGFLADA-LLGTTLLDVYAKVGEIVSAKKVFDEMGV-RDIAS 176
            A+     IH ++   L+   + +A  L T+L+D+YAK G+I +A +V D     R +++
Sbjct: 322 GAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLST 381

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WNA+I G A    A+ A D+F RM+  G+ +P+++T +G L+AC H G    G  I    
Sbjct: 382 WNAMIFGFAMHGRANAAFDIFSRMRKNGI-EPDDITFVGLLSACSHSGMLDLGRNI---F 437

Query: 237 REERLDMNVVV----CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           R  R D N+         +ID+    GL  +A E+ + +      V W +++ A  +HG+
Sbjct: 438 RSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGN 497

Query: 293 GPRALELFEQMGRAGVK 309
               LEL E   +  +K
Sbjct: 498 ----LELGESFAKKLIK 510


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/542 (38%), Positives = 317/542 (58%), Gaps = 5/542 (0%)

Query: 42   VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
            V + ++  YA   L  L  A  +F ++  PST  + A++     +     AV   R    
Sbjct: 563  VLTSLLSLYAKCGL--LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFA 620

Query: 102  GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
               R D+ T    L ACAR+  L     +     + G      + T  +D+Y K GE+  
Sbjct: 621  NGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAK 680

Query: 162  AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
            A++VFD+M  +D  +W A++ G A      EA+DLF  M+ EG+ KP+   V GAL+AC 
Sbjct: 681  AREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGM-KPDCYAVAGALSACT 739

Query: 222  HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
             LGA   G +    +  +    N V+  A+IDMYAKCG   +A+ VF  ++ +K ++ WN
Sbjct: 740  RLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMR-KKDIIVWN 798

Query: 282  TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
             M++   + G    A  L  QM ++GVK +D +++  LC+C H GL+ DG R F++M   
Sbjct: 799  AMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 858

Query: 342  -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
              + P ++HYG +VDLL RAG LQEA  +V  + M  + V+   LLG C+++ + E+AE 
Sbjct: 859  YHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEH 918

Query: 401  ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
              ++L+ +   N G++V+LSN+Y+   RW+D  ++R  MK + V+KVP  S++E  G +H
Sbjct: 919  VLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVH 978

Query: 461  KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            +F   DKSH    +IY+KLDE+  ++K  GY   T  V+ D+ +EEKE+ L +HSEKLA+
Sbjct: 979  EFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAI 1038

Query: 521  AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
            AF L+ T    +I+V KNLR+C DCH  IKL+S++ +REIIVRD  RFH F+DG+CSC D
Sbjct: 1039 AFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCND 1098

Query: 581  YW 582
            YW
Sbjct: 1099 YW 1100



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 3/181 (1%)

Query: 208 PNEVTVLGALAACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           P+ +T+  AL +   L    + G+++H    +     N  V  +++ +YAKCGLL +A  
Sbjct: 523 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 582

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VFD +    S V W  ++ A+   GD   A+ +       G++PD  + +  L AC    
Sbjct: 583 VFDEMP-HPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 641

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            +  G  ++ +    GV  ++    + VDL  + G + +A ++   +    D V W  ++
Sbjct: 642 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRH-KDAVAWGAMV 700

Query: 387 G 387
           G
Sbjct: 701 G 701


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/560 (36%), Positives = 338/560 (60%), Gaps = 43/560 (7%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
            L A    +G   + LF VR+ ++E YA +   E+A A A F +  AP            
Sbjct: 68  SLHARALRSGFAAADLF-VRTALVEMYAKTAAGEIALARAAFDE--AP------------ 112

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
                                R D   C+  L A      + E  ++   +       D 
Sbjct: 113 ---------------------RRDVFLCNVMLAAYVARGEVAEARKVFDGMSGR----DL 147

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
           +   T++  YA  G++  A+++FD    RD  SW+++I+  A+G  + EA++L++ M++ 
Sbjct: 148 VSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVA 207

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           GV  P+ ++++  L+AC  +GA   G ++H ++   R+++++ +  A++DMYAKCG ++ 
Sbjct: 208 GV-APDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIEN 266

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           + +VF  +   K ++TW++M++  A HG G  AL LF +M   G++P++++++  L AC 
Sbjct: 267 SLKVFHAMPV-KDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACT 325

Query: 324 HAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           H GLV+DG + F+SM++  GV P M+HYG +VDLLGRAG ++EA ++++S++   D ++W
Sbjct: 326 HVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIW 385

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
           +TLLGAC+++ +VE+AE A  KL  +     G +VLLSN+YA    W+ V  +RK ++  
Sbjct: 386 RTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRE 445

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
           ++++VPG S IE    +H+F + D+SH +  EIY+ L+E+M ++++ GY   TS VL DI
Sbjct: 446 NIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDI 505

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            E+ K+ AL  HSEKLA+AFGL+ T   +++++ KNLR C DCH  IKLIS  Y+R++IV
Sbjct: 506 DEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRKLIV 565

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RDR RFH F +G CSCKDYW
Sbjct: 566 RDRNRFHHFSEGQCSCKDYW 585


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/528 (39%), Positives = 319/528 (60%), Gaps = 12/528 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF +++ P    +NA++ G + +    ++V  ++++     R ++ T    L A   
Sbjct: 266 AQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSST----LVAVIP 321

Query: 121 VLALF--ETLQ--IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           V + F  E L   +H+ V++    ADAL+ T L  +Y ++ ++ SA+ +FD M  + + S
Sbjct: 322 VYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMES 381

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WNA+I+G AQ  L   AV LF+ M+   V +PN +T+   L+AC HLGA   G  +H  I
Sbjct: 382 WNAMISGYAQNGLTEMAVALFQLMQELNV-QPNPITISSTLSACAHLGALSLGKWVHRII 440

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +E+L++NV V  A+IDMYAKCG + +A  +FD +   K++V+WN M+  + +HG G  A
Sbjct: 441 SKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMD-NKNVVSWNAMISGYGLHGQGAEA 499

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVD 355
           L+L++ M  A + P   ++L+ + AC+H GLVD+G ++F  M N   + P ++H   +VD
Sbjct: 500 LKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVD 559

Query: 356 LLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           LLGRAG+L EA +++           +W  LLGAC ++ + ++A++AS+KL E+ S N G
Sbjct: 560 LLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAG 619

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
            +VLLSNLY + + + +   VR+  K R + K PG + IE+G   H F   D  H +   
Sbjct: 620 YYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEA 679

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY  L+ +  K+ E GY   T   L+D+ EEEKE+ +  HSEKLA+AFGL+ST   T I+
Sbjct: 680 IYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIR 739

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + KNLR+C DCH+  K ISKV  R I+VRD  RFH F+DG CSC DYW
Sbjct: 740 IIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 165/333 (49%), Gaps = 6/333 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  + +P T  +N +L GL  S      V   R +  G  R D+ T + +L+A A 
Sbjct: 168 ARKVFDTVPSPDTILWNTLLAGLPGSEALEAFV---RMVDAGRVRPDSTTLASSLRAAAE 224

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              +     +H + ++ G      + T L+ +Y+K G++ SA+ +FD M   D+ ++NAL
Sbjct: 225 ASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNAL 284

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I+G +   +   +V+LFK +   G ++PN  T++  +      G       +H ++ + R
Sbjct: 285 ISGYSVNGMVESSVELFKELTASG-WRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKAR 343

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           LD + +V  A+  +Y +   ++ A  +FD +   K++ +WN M+  +A +G    A+ LF
Sbjct: 344 LDADALVSTALTTLYCRLNDMESARSIFDAM-LEKTMESWNAMISGYAQNGLTEMAVALF 402

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
           + M    V+P+ ++  + L AC H G +  G  +   ++   ++ N+    +++D+  + 
Sbjct: 403 QLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKC 462

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           G + EA  I   +    ++V W  ++    L+G
Sbjct: 463 GSIAEARSIFDRMD-NKNVVSWNAMISGYGLHG 494



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 141/313 (45%), Gaps = 41/313 (13%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYAL-SPLNELAYAHALFRQINAPSTNDFNAV 79
           H+ QL A    +G +     P  + ++ + +L +P + L     LFR    P     NA+
Sbjct: 35  HLDQLLAVSLASGHYALDPAPATALLLRYASLRAPPSHLLR---LFRAFPCPDRFLRNAL 91

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK-------------ACARVLALFE 126
           LR L  S +P         +L  S   D+ + +FA               A AR L    
Sbjct: 92  LRSLP-SLRP--------HLLFPS--PDSFSFAFAATSLSSSCSSRGNDAAAARTL---- 136

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
               H   +  G+ AD  + + L  +Y K+     A+KVFD +   D   WN L+AGL  
Sbjct: 137 ----HGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLP- 191

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
               SEA++ F RM   G  +P+  T+  +L A         G  +H Y  +  L  +  
Sbjct: 192 ---GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEH 248

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V   ++ +Y+KCG +D A  +FD +     LV +N ++  ++V+G    ++ELF+++  +
Sbjct: 249 VVTGLMSLYSKCGDMDSAQFLFDRMD-NPDLVAYNALISGYSVNGMVESSVELFKELTAS 307

Query: 307 GVKPDDVSYLAAL 319
           G +P+  + +A +
Sbjct: 308 GWRPNSSTLVAVI 320


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/542 (38%), Positives = 317/542 (58%), Gaps = 5/542 (0%)

Query: 42   VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
            V + ++  YA   L  L  A  +F ++  PST  + A++     +     AV   R    
Sbjct: 587  VLTSLLSLYAKCGL--LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFA 644

Query: 102  GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
               R D+ T    L ACAR+  L     +     + G      + T  +D+Y K GE+  
Sbjct: 645  NGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAK 704

Query: 162  AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
            A++VFD+M  +D  +W A++ G A      EA+DLF  M+ EG+ KP+   V GAL+AC 
Sbjct: 705  AREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGM-KPDCYAVAGALSACT 763

Query: 222  HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
             LGA   G +    +  +    N V+  A+IDMYAKCG   +A+ VF  ++ +K ++ WN
Sbjct: 764  RLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMR-KKDIIVWN 822

Query: 282  TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
             M++   + G    A  L  QM ++GVK +D +++  LC+C H GL+ DG R F++M   
Sbjct: 823  AMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 882

Query: 342  -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
              + P ++HYG +VDLL RAG LQEA  +V  + M  + V+   LLG C+++ + E+AE 
Sbjct: 883  YHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEH 942

Query: 401  ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
              ++L+ +   N G++V+LSN+Y+   RW+D  ++R  MK + V+KVP  S++E  G +H
Sbjct: 943  VLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVH 1002

Query: 461  KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            +F   DKSH    +IY+KLDE+  ++K  GY   T  V+ D+ +EEKE+ L +HSEKLA+
Sbjct: 1003 EFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAI 1062

Query: 521  AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
            AF L+ T    +I+V KNLR+C DCH  IKL+S++ +REIIVRD  RFH F+DG+CSC D
Sbjct: 1063 AFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCND 1122

Query: 581  YW 582
            YW
Sbjct: 1123 YW 1124



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 3/181 (1%)

Query: 208 PNEVTVLGALAACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           P+ +T+  AL +   L    + G+++H    +     N  V  +++ +YAKCGLL +A  
Sbjct: 547 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 606

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VFD +    S V W  ++ A+   GD   A+ +       G++PD  + +  L AC    
Sbjct: 607 VFDEMP-HPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 665

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            +  G  ++ +    GV  ++    + VDL  + G + +A ++   +    D V W  ++
Sbjct: 666 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRH-KDAVAWGAMV 724

Query: 387 G 387
           G
Sbjct: 725 G 725


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/527 (39%), Positives = 310/527 (58%), Gaps = 4/527 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALK 116
           L  A +LF ++       + A++ G     +P  A+  +R M R  + +S+  T S AL 
Sbjct: 152 LQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALA 211

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           A A V  L    +IH +++R G  +D ++ + L D+Y K G I  A+ +FD+M  RDI +
Sbjct: 212 AAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVT 271

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W A+I    Q     E  DLF  +   G+ +PNE T  G L AC +  + + G K+H Y+
Sbjct: 272 WTAMIDRYFQDGRRKEGFDLFADLLRSGI-RPNEFTFSGVLNACANQTSEELGKKVHGYM 330

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
                D      +A++ MY+KCG +  A  VF     +  L +W +++  +A +G    A
Sbjct: 331 TRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAGYAQNGQPDEA 389

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVD 355
           +  FE + ++G +PD ++++  L AC HAGLVD G+  F+S+    G+     HY  ++D
Sbjct: 390 IRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIID 449

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LL R+G+  EA +I+  +SM  D  LW +LLG C+++G++++A+ A+  L E+   N   
Sbjct: 450 LLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPAT 509

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +V L+N+YA    W +V ++RK M +R V K PG S+I +   +H F   D SH K +EI
Sbjct: 510 YVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEI 569

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
            E L ++  ++KE G+   T+ VLHD+ +E+KE  L YHSEKLAVAFG+IST E T I+V
Sbjct: 570 NEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKV 629

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           FKNLR C DCH  IK ISK+ NR+IIVRD  RFH F+DG CSC+DYW
Sbjct: 630 FKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 159/345 (46%), Gaps = 33/345 (9%)

Query: 98  QMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157
           Q+L    +  A   S  +++C +   L +  ++H H+   GF+    +   LL++YAK  
Sbjct: 60  QILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCD 119

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNL---------------------------- 189
            ++ ++K+FDEM  RD+ SWN LI+G A+  L                            
Sbjct: 120 SLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVR 179

Query: 190 ---ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
               +EA++LF+ MK     K N+ TV  ALAA   +   + G +IH YI    LD + V
Sbjct: 180 HDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEV 239

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V +A+ DMY KCG +++A  +FD +  R  +VTW  M+  +   G      +LF  + R+
Sbjct: 240 VWSALSDMYGKCGSIEEARHIFDKMVDR-DIVTWTAMIDRYFQDGRRKEGFDLFADLLRS 298

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           G++P++ ++   L AC +    + G ++   M   G  P      ++V +  + G +  A
Sbjct: 299 GIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSA 358

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
             + K      D+  W +L+      G  + A      LV+ G+ 
Sbjct: 359 ERVFKETPQ-PDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQ 402


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/586 (36%), Positives = 339/586 (57%), Gaps = 14/586 (2%)

Query: 1   MANLNALLQKCSSNGAVS---HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE 57
           +A + ++   C+ +  +S    +H   ++A  +   +F + L  + SK           +
Sbjct: 145 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC---------GD 195

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A A+FR+++  S   + +++ G A       AV  + +M       D  T +  L  
Sbjct: 196 LDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNC 255

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CAR   L E  ++H  +  +    D  +   L+D+YAK G +  A+ VF EM V+DI SW
Sbjct: 256 CARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISW 315

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N +I G ++   A+EA+ LF  +  E  F P+E TV   L AC  L A+ +G +IH YI 
Sbjct: 316 NTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM 375

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
                 +  V N+++DMYAKCG L  A  +FD+I   K LV+W  M+  + +HG G  A+
Sbjct: 376 RNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI-ASKDLVSWTVMIAGYGMHGFGKEAI 434

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDL 356
            LF QM +AG++ D++S+++ L AC+H+GLVD+G R FN M + C ++P ++HY  +VD+
Sbjct: 435 ALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDM 494

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L R G L +A   ++++ +  D  +W  LL  C+++ DV++AE  + K+ E+   N G +
Sbjct: 495 LARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYY 554

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VL++N+YA  E+W+ V R+RK +  R ++K PG S+IE+ G ++ F   D S+ +   I 
Sbjct: 555 VLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIE 614

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
             L ++  ++ E GY+  T   L D  E EKE ALC HSEKLA+A G+IS+     I+V 
Sbjct: 615 AFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVT 674

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+C DCH++ K +SK+  REI++RD  RFH+FKDG CSC+ +W
Sbjct: 675 KNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 168/330 (50%), Gaps = 15/330 (4%)

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F ++       +N ++  LA S   + ++  +++M+      D+ T S   K+ + + ++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               Q+H  +L+ GF     +G +L+  Y K   + SA+KVFDEM  RD+ SWN++I G 
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE------YIRE 238
               LA + + +F +M + G+ + +  T++   A C        G  +H       + RE
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           +R       CN ++DMY+KCG LD A  VF  +  R S+V++ +M+  +A  G    A++
Sbjct: 180 DRF------CNTLLDMYSKCGDLDSAKAVFREMSDR-SVVSYTSMIAGYAREGLAGEAVK 232

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LFE+M   G+ PD  +  A L  C    L+D+G R+   +    +  ++    +++D+  
Sbjct: 233 LFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYA 292

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           + G +QEA ++V S     D++ W T++G 
Sbjct: 293 KCGSMQEA-ELVFSEMRVKDIISWNTIIGG 321



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 160/334 (47%), Gaps = 4/334 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++       +N+++ G   +      +  + QML      D  T       CA 
Sbjct: 98  ARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCAD 157

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              +     +HS  ++  F  +     TLLD+Y+K G++ SAK VF EM  R + S+ ++
Sbjct: 158 SRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSM 217

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IAG A+  LA EAV LF+ M+ EG+  P+  TV   L  C       EG ++HE+I+E  
Sbjct: 218 IAGYAREGLAGEAVKLFEEMEEEGI-SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND 276

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L  ++ V NA++DMYAKCG + +A  VF  ++  K +++WNT++  ++ +     AL LF
Sbjct: 277 LGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV-KDIISWNTIIGGYSKNCYANEALSLF 335

Query: 301 E-QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
              +      PD+ +    L AC      D G  +   +   G   +     S+VD+  +
Sbjct: 336 NLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAK 395

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            G L  A  +   ++   D+V W  ++    ++G
Sbjct: 396 CGALLLAHMLFDDIA-SKDLVSWTVMIAGYGMHG 428


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/586 (36%), Positives = 339/586 (57%), Gaps = 14/586 (2%)

Query: 1   MANLNALLQKCSSNGAVS---HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE 57
           +A + ++   C+ +  +S    +H   ++A  +   +F + L  + SK           +
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC---------GD 346

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A A+FR+++  S   + +++ G A       AV  + +M       D  T +  L  
Sbjct: 347 LDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNC 406

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CAR   L E  ++H  +  +    D  +   L+D+YAK G +  A+ VF EM V+DI SW
Sbjct: 407 CARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISW 466

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N +I G ++   A+EA+ LF  +  E  F P+E TV   L AC  L A+ +G +IH YI 
Sbjct: 467 NTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM 526

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
                 +  V N+++DMYAKCG L  A  +FD+I   K LV+W  M+  + +HG G  A+
Sbjct: 527 RNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI-ASKDLVSWTVMIAGYGMHGFGKEAI 585

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDL 356
            LF QM +AG++ D++S+++ L AC+H+GLVD+G R FN M + C ++P ++HY  +VD+
Sbjct: 586 ALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDM 645

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L R G L +A   ++++ +  D  +W  LL  C+++ DV++AE  + K+ E+   N G +
Sbjct: 646 LARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYY 705

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VL++N+YA  E+W+ V R+RK +  R ++K PG S+IE+ G ++ F   D S+ +   I 
Sbjct: 706 VLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIE 765

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
             L ++  ++ E GY+  T   L D  E EKE ALC HSEKLA+A G+IS+     I+V 
Sbjct: 766 AFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVT 825

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+C DCH++ K +SK+  REI++RD  RFH+FKDG CSC+ +W
Sbjct: 826 KNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 172/338 (50%), Gaps = 15/338 (4%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  +F ++       +N ++  LA S   + ++  +++M+      D+ T S   K
Sbjct: 144 DLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSK 203

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           + + + ++    Q+H  +L+ GF     +G +L+  Y K   + SA+KVFDEM  RD+ S
Sbjct: 204 SFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVIS 263

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE-- 234
           WN++I G     LA + + +F +M + G+ + +  T++   A C        G  +H   
Sbjct: 264 WNSIINGYVSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCADSRLISLGRAVHSIG 322

Query: 235 ----YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
               + RE+R       CN ++DMY+KCG LD A  VF  +  R S+V++ +M+  +A  
Sbjct: 323 VKACFSREDRF------CNTLLDMYSKCGDLDSAKAVFREMSDR-SVVSYTSMIAGYARE 375

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
           G    A++LFE+M   G+ PD  +  A L  C    L+D+G R+   +    +  ++   
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS 435

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            +++D+  + G +QEA ++V S     D++ W T++G 
Sbjct: 436 NALMDMYAKCGSMQEA-ELVFSEMRVKDIISWNTIIGG 472



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 140/303 (46%), Gaps = 4/303 (1%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIH 131
           S  D N  LR    S    NAV      + G    D  T    L+ CA   +L +  ++ 
Sbjct: 60  SVTDANTQLRRFCESGNLENAVKLL--CVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVD 117

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
           + +  +GF+ D+ LG+ L  +Y   G++  A +VFDE+ +     WN L+  LA+    S
Sbjct: 118 NFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFS 177

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
            ++ LFK+M   GV + +  T      +   L +   G+++H +I +        V N++
Sbjct: 178 GSIGLFKKMMSSGV-EMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSL 236

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           +  Y K   +D A +VFD +   + +++WN+++  +  +G   + L +F QM  +G++ D
Sbjct: 237 VAFYLKNQRVDSARKVFDEMT-ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEID 295

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
             + ++    C  + L+  G  + +           +   +++D+  + G L  A  + +
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR 355

Query: 372 SVS 374
            +S
Sbjct: 356 EMS 358


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/520 (38%), Positives = 309/520 (59%), Gaps = 3/520 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++       +N ++ G A S +   A+   R+M R   + D+ T S  L   A    
Sbjct: 129 VFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGAD 188

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           +   +++H    R+GF  D  +G++L+D+YA       + KVFD + VRD   WN+++AG
Sbjct: 189 VRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAG 248

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            AQ     EA+ LF+RM   G+ KP  VT    + ACG+L +   G ++H Y+     D 
Sbjct: 249 CAQNGSVDEALGLFRRMLHSGI-KPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDG 307

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           NV + +++IDMY KCG +  A  +FD I+    +V+W  M+M  A+HG    AL LF++M
Sbjct: 308 NVFISSSLIDMYCKCGNVSIARRIFDRIQ-SPDIVSWTAMIMGHALHGPAREALVLFDRM 366

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGR 362
               +KP+ +++LA L AC+HAGLVD G + FNSM++  G+ P+++H+ ++ D LGR G+
Sbjct: 367 ELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGK 426

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L+EA + +  + +     +W TLL AC+++ +  +AE  ++K+ ++   + G  ++LSN 
Sbjct: 427 LEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNT 486

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           Y++  RW++   +RK+M+ + ++K P  S+IEV    H F   DKSH  +  I + L+  
Sbjct: 487 YSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVF 546

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
             ++   GY   T  V  DI EE+K + LC HSEKLA+ FG+IST   T+I+V KNLR+C
Sbjct: 547 SEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVC 606

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH V K ISK+  REI++RD  RFH FKDG CSC D+W
Sbjct: 607 VDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 154/325 (47%), Gaps = 18/325 (5%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV-----------GEIV-- 160
           ALK+CA +        +H+  LR G  AD      LL++Y K+           G  V  
Sbjct: 64  ALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVL 123

Query: 161 -SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
            S +KVFDEM  +D+ SWN L+ G A+     EA+ L + M  +G  KP+  T+   L  
Sbjct: 124 ESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGC-KPDSFTLSSVLPI 182

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
                  + G ++H +        +V V +++IDMYA C   D + +VFDN+  R +++ 
Sbjct: 183 FAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAIL- 241

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           WN+M+   A +G    AL LF +M  +G+KP  V++ + + AC +   +  G +L   + 
Sbjct: 242 WNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVI 301

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             G   N+    S++D+  + G +  A  I   +    D+V W  ++    L+G    A 
Sbjct: 302 RGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQ-SPDIVSWTAMIMGHALHGPAREAL 360

Query: 400 IASRKLVEMGSNNCGDFVLLSNLYA 424
           +   ++ E+G+        L+ L A
Sbjct: 361 VLFDRM-ELGNLKPNHITFLAVLTA 384



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 20/242 (8%)

Query: 185 AQGNLASEAVDLFKRMKME---GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           +QG+    A+ LF RM+             ++ GAL +C  LG    G  +H        
Sbjct: 31  SQGDF-HHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGA 89

Query: 242 DMNVVVCNAVIDMYAKCG--------------LLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
             +    NA++++Y K                +L+   +VFD +   K +V+WNT+V+  
Sbjct: 90  FADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMP-EKDVVSWNTLVLGC 148

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM 347
           A  G    AL L  +M R G KPD  +  + L        V  G+ L       G   ++
Sbjct: 149 AESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDV 208

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
               S++D+     R   +  +  ++ +  D +LW ++L  C   G V+ A    R+++ 
Sbjct: 209 FVGSSLIDMYANCTRTDYSVKVFDNLPV-RDAILWNSMLAGCAQNGSVDEALGLFRRMLH 267

Query: 408 MG 409
            G
Sbjct: 268 SG 269


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/546 (37%), Positives = 320/546 (58%), Gaps = 26/546 (4%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALKA-C 118
           AH LF +I  P +  +N +L     S     A+ ++ +M ++     + L   FA     
Sbjct: 124 AHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQM 183

Query: 119 ARVLALFETLQ---------IHSHVLRHGFLADA------------LLGTTLLDVYAKVG 157
            +   LF  +          + S  + HG L  A            ++ T +L  Y K G
Sbjct: 184 QKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFG 243

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
           ++  A+++F  M V+++ +WN++IAG  +   A + + +FK M +E   +PN +++   L
Sbjct: 244 KVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVL 302

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
             C +L A   G ++H+ + +  L  +   C ++I MY KCG LD A+++F  +  RK +
Sbjct: 303 LGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDV 361

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           ++WN M+  +A HG G +AL LF++M    +KPD ++++A + ACNHAG VD GV+ F S
Sbjct: 362 ISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKS 421

Query: 338 MAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
           M    G++    HY  V+DLLGRAGRL EA  ++K +       ++ TLLGAC+++ +++
Sbjct: 422 MKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLD 481

Query: 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
           +AE A+R L+ +   +   +V L+N+YAA  +WD V +VRK MK  +V K+PG+S+IE+ 
Sbjct: 482 LAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIK 541

Query: 457 GVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSE 516
            V H+F +SD+ H +   I++KL+E+  K+K  GY       LHD+ EE KE  L +HSE
Sbjct: 542 SVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSE 601

Query: 517 KLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
           KLA+AFGL+ T+  T I+VFKNLR+C DCH  IK IS +  REIIVRD  RFH F++G C
Sbjct: 602 KLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFC 661

Query: 577 SCKDYW 582
           SC DYW
Sbjct: 662 SCGDYW 667



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 127/300 (42%), Gaps = 44/300 (14%)

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ-GNLASEAVDLFKRMKMEGVFKPNEV 211
           + +  ++ SA+ VF++M VR   +WN +++G  +      EA +LF ++      +P+ V
Sbjct: 83  FVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIP-----EPDSV 137

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           +    +  C +L ++     +  + +    D  +   N +I  +A+ G + KAF++F ++
Sbjct: 138 S-YNIMLVC-YLRSYGVEAALAFFNKMPVKD--IASWNTLISGFAQNGQMQKAFDLF-SV 192

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
              K+ V+W+ M+  +  HGD   A EL++ +G   V    V   A L      G V+  
Sbjct: 193 MPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSV----VVETAMLTGYMKFGKVELA 248

Query: 332 VRLFNSMA----------------NCGVKPNMKHYGSVVDLLGRAGRLQEA-----CDIV 370
            R+F  MA                NC  +  +K + ++++   R   L  +     C  +
Sbjct: 249 ERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNL 308

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
            ++ +G  M     L+    L  D      A   L+ M    CGD      L+    R D
Sbjct: 309 SALPLGRQM---HQLVSKSPLSKDT----TACTSLISMYC-KCGDLDSAWKLFLEMPRKD 360



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA-VHGDGPRALELFEQ 302
           +VV  N  I  + +   L+ A  VF+ +  R + VTWNTM+  +  V G    A ELF++
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTT-VTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           +     +PD VSY   L     +  V+  +  FN M    VK ++  + +++    + G+
Sbjct: 131 IP----EPDSVSYNIMLVCYLRSYGVEAALAFFNKMP---VK-DIASWNTLISGFAQNGQ 182

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
           +Q+A D+  SV    + V W  ++     +GD+E AE
Sbjct: 183 MQKAFDLF-SVMPEKNGVSWSAMISGYVEHGDLEAAE 218


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/523 (38%), Positives = 309/523 (59%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH +F +I   S   + A+  G   + K   A+  +++M+    R D+      L AC  
Sbjct: 165 AHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVH 224

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           V  L     I  H+       ++ + TTL+++YAK G++  A+ VFD MG +DI +W+ +
Sbjct: 225 VGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTM 284

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G A  +   E ++ F +M  E + KP++ +++G L++C  LGA   G+     I    
Sbjct: 285 IQGYASNSFPKEGIEFFLQMLQENL-KPDQFSIVGFLSSCASLGALDLGEWGISLIDRHE 343

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              N+ + NA+IDMYAKCG + + FEVF  +K  K +V  N  +   A +G    +  +F
Sbjct: 344 FLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSFAVF 402

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGR 359
            Q  + G+ PD  ++L  LC C HAGL+ DG+R FN+++    +K  ++HYG +VDL GR
Sbjct: 403 GQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGR 462

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L +A  ++  + M  + ++W  LL  C+L  D ++AE   ++L+ +   N G++V L
Sbjct: 463 AGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQL 522

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+Y+   RWD+   VR  M  + +KK+PG+S+IE+ G +H+F   DKSH    +IY KL
Sbjct: 523 SNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKL 582

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +++  +++  G+   T  V  D+ +EEKE  L +HSEKLAVAFGLIST     I+V KNL
Sbjct: 583 EDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNL 642

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH+V+KLISK+  REI+VRD  RFH F +G+CSC DYW
Sbjct: 643 RVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 165/339 (48%), Gaps = 3/339 (0%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           Y+  LF     P+   +N ++ G  ++      +  +  + +        T    LKAC 
Sbjct: 63  YSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACT 122

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           R       + +HS V++ GF  D    T+LL +Y+  G +  A KVF+E+  R + +W A
Sbjct: 123 RASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTA 182

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           L +G        EA+DLFK+M   GV +P+   ++  L+AC H+G    G+ I +++ E 
Sbjct: 183 LFSGYTTAGKHREAIDLFKKMVEMGV-RPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEM 241

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            +  N  V   ++++YAKCG ++KA  VFD++   K +VTW+TM+  +A +      +E 
Sbjct: 242 EMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMG-EKDIVTWSTMIQGYASNSFPKEGIEF 300

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           F QM +  +KPD  S +  L +C   G +D G    + +       N+    +++D+  +
Sbjct: 301 FLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAK 360

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            G +    ++ K +    D+V+    +      G V+++
Sbjct: 361 CGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLS 398


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/437 (45%), Positives = 276/437 (63%), Gaps = 3/437 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            T++  YA+ G+I  A+  FD M  RD  SW A+IAG AQ     EA+ LF  MK +G  
Sbjct: 251 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE- 309

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           + N  T    L+ C  + A + G ++H  + +  L+    V NA++ MY KCG +D A+ 
Sbjct: 310 RLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYI 369

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ I+  K +V+WNTM+  +A HG G  AL LFE M + G+ PDDV+ +  L AC+H G
Sbjct: 370 VFEGIE-EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTG 428

Query: 327 LVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LVD G   F SM  + G+  N KHY  ++DLLGRAGRL +A +++K++    D   W  L
Sbjct: 429 LVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGAL 488

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGA +++G+ E+ E A++ + EM  +N G +VLLSNLYAA  RW DVGR+R  M++R VK
Sbjct: 489 LGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVK 548

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           KVPG+S++EV   IH F   D  H +   IY  L+E+  K+K+ GY + T  VLHD+ EE
Sbjct: 549 KVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEE 608

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EK + L YHSEKLAVAFG+++      I+V KNLR+C DCH+ +K ISK+  R II+RD 
Sbjct: 609 EKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDS 668

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F  G CSC DYW
Sbjct: 669 HRFHHFNGGQCSCGDYW 685



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 11/293 (3%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           ++A A   F ++    +  + A++ G A S     A+  + +M R   R +  T +  L 
Sbjct: 262 DIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLS 321

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            CA + AL    Q+H  V++ G  +   +G  LL +Y K G I  A  VF+ +  +++ S
Sbjct: 322 TCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVS 381

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK-IHEY 235
           WN +IAG A+     EA+ LF+ MK  G+  P++VT++G L+AC H G   +G +  +  
Sbjct: 382 WNTMIAGYARHGFGKEALMLFESMKKTGIL-PDDVTMVGVLSACSHTGLVDKGTEYFYSM 440

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD--- 292
            ++  +  N      +ID+  + G LD A  +  N+       TW  ++ A  +HG+   
Sbjct: 441 TQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTEL 500

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHA-GLVDDGVRLFNSMANCGVK 344
           G +A ++  +M     +PD+      L     A G   D  R+   M + GVK
Sbjct: 501 GEKAAKMIFEM-----EPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVK 548



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 30/301 (9%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  LF Q+       +NA+L G A +     A   +          D + C  ++  
Sbjct: 46  LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF----------DEMPCKNSISW 95

Query: 118 CARVLALFETLQIHSHVLRHGFLADA----LLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
              + A  +  +I     R  F + A    +    ++  Y K   +V A+ +FD M  RD
Sbjct: 96  NGMLAAYVQNGRIED--ARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERD 153

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
             SWN +I+G AQ     EA  LF+   +  VF     T    ++     G   E  ++ 
Sbjct: 154 EVSWNTMISGYAQNGELLEAQRLFEESPVRDVF-----TWTAMVSGYVQNGMLDEARRVF 208

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
           + + E+    N V  NA+I  Y +C  +D+A E+F+ + C +++ +WNTM+  +A +GD 
Sbjct: 209 DGMPEK----NSVSWNAIIAGYVQCKRMDQARELFEAMPC-QNVSSWNTMITGYAQNGDI 263

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
            +A   F++M     + D +S+ A +     +G  ++ + LF  M   G + N   + S 
Sbjct: 264 AQARNFFDRM----PQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTST 319

Query: 354 V 354
           +
Sbjct: 320 L 320



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 118/252 (46%), Gaps = 11/252 (4%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +   T++  YA+ GE++ A+++F+E  VRD+ +W A+++G  Q  +  EA  +F  M 
Sbjct: 153 DEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMP 212

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            +     N   ++     C  +   +E       + E     NV   N +I  YA+ G +
Sbjct: 213 EKNSVSWN--AIIAGYVQCKRMDQARE-------LFEAMPCQNVSSWNTMITGYAQNGDI 263

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
            +A   FD +  R S ++W  ++  +A  G G  AL LF +M R G + +  ++ + L  
Sbjct: 264 AQARNFFDRMPQRDS-ISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 322

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C     ++ G ++   +   G++       +++ +  + G + +A  + + +    ++V 
Sbjct: 323 CAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEE-KEVVS 381

Query: 382 WQTLLGACQLYG 393
           W T++     +G
Sbjct: 382 WNTMIAGYARHG 393



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 118/238 (49%), Gaps = 19/238 (7%)

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           +A+ +FD+M  RD+ SWNA+++G AQ     EA ++F  M  +     N ++  G LAA 
Sbjct: 48  AARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK-----NSISWNGMLAAY 102

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
              G  ++  ++     E + D  ++  N ++  Y K   L  A  +FD +  R   V+W
Sbjct: 103 VQNGRIEDARRLF----ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDE-VSW 157

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           NTM+  +A +G+   A  LFE+   + V+ D  ++ A +      G++D+  R+F+ M  
Sbjct: 158 NTMISGYAQNGELLEAQRLFEE---SPVR-DVFTWTAMVSGYVQNGMLDEARRVFDGMP- 212

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              + N   + +++    +  R+ +A ++ +++    ++  W T++      GD+  A
Sbjct: 213 ---EKNSVSWNAIIAGYVQCKRMDQARELFEAMPC-QNVSSWNTMITGYAQNGDIAQA 266


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/590 (35%), Positives = 337/590 (57%), Gaps = 22/590 (3%)

Query: 1   MANLNALLQKC-----SSNGAVSHIHIKQ--LQAHLTTTGQFQSKLFPVRSKIIEFYALS 53
           ++NL+ LLQ C     S  G   H  I +  L+  + T+             +I  Y+  
Sbjct: 43  VSNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNM-----------LINMYSKC 91

Query: 54  PLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF 113
            L  +  A   F ++   S   +N V+  L  +++   A+    QM R     +  T S 
Sbjct: 92  SL--VDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISS 149

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
            L  CA   A+ E +Q+H+  ++    ++  +GT LL VYAK   I  A ++F+ M  ++
Sbjct: 150 VLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKN 209

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
             +W++++AG  Q     EA+ +F+  ++ G F  +   +  A++AC  L    EG ++H
Sbjct: 210 AVTWSSMMAGYVQNGFHEEALLIFRNAQLMG-FDQDPFMISSAVSACAGLATLIEGKQVH 268

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
               +     N+ V +++IDMYAKCG + +A+ VF  +   +S+V WN M+  FA H   
Sbjct: 269 AISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARA 328

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGS 352
           P A+ LFE+M + G  PDDV+Y+  L AC+H GL ++G + F+ M     + P++ HY  
Sbjct: 329 PEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSC 388

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           ++D+LGRAG + +A D+++ +       +W +LL +C++YG++E AEIA++ L EM  NN
Sbjct: 389 MIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNN 448

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW 472
            G+ +LL+N+YAA ++WD+V R RK ++  DV+K  G S+IE+   IH F   +++H + 
Sbjct: 449 AGNHILLANIYAANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQI 508

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
            +IY KLD ++ ++K+  Y   TS  LHD+ E  K+  L +HSEKLA+ FGL+       
Sbjct: 509 DDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIP 568

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           I++ KNLRIC DCH  +KL+SK  +REIIVRD  RFH FKDG CSC ++W
Sbjct: 569 IRIIKNLRICGDCHTFMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/565 (38%), Positives = 339/565 (60%), Gaps = 17/565 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPS---TNDFNAV 79
           KQL  H+  TG        V++ +I  Y    L  +  A  LF + N  S   T  +N++
Sbjct: 30  KQLHCHVFKTGCLLEPF--VQTSLISMYGKCSL--IDNARKLFDE-NPQSRKLTVCYNSL 84

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           L G A +S+  + V+ + +M       + +T    ++ C     L   + +H   ++ G 
Sbjct: 85  LSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGL 144

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
             D+ +G  LL +Y K GEI   +K+FDEM  + + +WNA+I G AQ  LA+  ++L+K 
Sbjct: 145 DMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKE 204

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+ +G F P+ +T++G L++C HLGA   G ++   +       N  + NA+++MYA+CG
Sbjct: 205 MESKG-FCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCG 263

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            L KA ++FD +   KS+V+W  ++  + +HG G  A+ LF++M R G+KPD  ++++ L
Sbjct: 264 NLKKARDIFDGMPV-KSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVL 322

Query: 320 CACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
            AC+HAGL + G+  F  M    G++P  +HY  +VDLLGRAGRL EA ++++S+ +  D
Sbjct: 323 SACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRAD 382

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
             LW  LLGAC+++ +VE+AE+A  +++E+   N G +VLLSN+Y      + + RVR  
Sbjct: 383 GALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRML 442

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           M+ R +KK PG SY+E  G +H FF  D++H +  EIY+KL+E+   +K+        C 
Sbjct: 443 MRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNELENLVKDL-----DGCK 497

Query: 499 LHD-IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
            +D    EE  N++  HSEKLAVAF L++T + T I + KNLRIC DCH  IKL+SK+ +
Sbjct: 498 KNDHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVD 557

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           R+ +VRD  RFH FK+G CSCK+YW
Sbjct: 558 RQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 158/302 (52%), Gaps = 5/302 (1%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           MLR     +A T  FA+K+CA +       Q+H HV + G L +  + T+L+ +Y K   
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 159 IVSAKKVFDE--MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
           I +A+K+FDE     +    +N+L++G A  +   + V LF  M+  GV + N VT+LG 
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGV-EINGVTMLGL 119

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
           +  CG  G    G  +H +  +  LDM+  V N ++ MY K G +D   ++FD +  RK 
Sbjct: 120 VQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMP-RKG 178

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFN 336
           L+TWN M+  +A +G     LEL+++M   G  PD ++ +  L +C H G +  G  +  
Sbjct: 179 LITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVER 238

Query: 337 SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
            M   G   N     ++V++  R G L++A DI   + + + +V W  ++G   ++G  E
Sbjct: 239 KMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKS-VVSWTAIIGGYGMHGQGE 297

Query: 397 MA 398
           +A
Sbjct: 298 VA 299


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/583 (37%), Positives = 337/583 (57%), Gaps = 14/583 (2%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
             ++ L  CS  G +S    ++++A    +G     +  V++ +I  Y  S    L  A 
Sbjct: 165 TFSSALYACSVVGDISQG--REIEARTVASGYASDSI--VQNALINMY--SKCGSLESAR 218

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F ++       +N ++ G A     T A+  +++M     + + +T    L AC  + 
Sbjct: 219 KVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLE 278

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE-IVSAKKVFDEMGVRDIASWNALI 181
            L +   IH  V  HG+ +D ++G  LL++Y K    +  A++VF+ +  RD+ +WN LI
Sbjct: 279 DLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILI 338

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
               Q   A +A+D+FK+M++E V  PNE+T+   L+AC  LGA ++G  +H  I   R 
Sbjct: 339 VAYVQYGQAKDALDIFKQMQLENV-APNEITLSNVLSACAVLGAKRQGKAVHALIASGRC 397

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
             +VV+ N++++MY +CG LD    VF  I+  KSLV+W+T++ A+A HG     LE F 
Sbjct: 398 KADVVLENSLMNMYNRCGSLDDTVGVFAAIR-DKSLVSWSTLIAAYAQHGHSRTGLEHFW 456

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRA 360
           ++ + G+  DDV+ ++ L AC+H G++ +GV+ F SM  + G+ P+ +H+  +VDLL RA
Sbjct: 457 ELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRA 516

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV-LL 419
           GRL+ A +++  +    D V W +LL  C+L+ D + A   + KL E+ S +    V LL
Sbjct: 517 GRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLL 576

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YA   RWDDV   RK    R  +K PG SYIE+   +H+F   DKSH +   I  ++
Sbjct: 577 SNVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEI 633

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
             +  ++K+ GY      VLH++ EEEKE  LCYHSEKLA+A+GLIST   T + + KNL
Sbjct: 634 KRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNL 693

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R C DCH   K IS++  R+I+VRD  RFH F++G+CSCKDYW
Sbjct: 694 RACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 195/354 (55%), Gaps = 9/354 (2%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + +I  YA     +L  A   F ++   +   +NA++ G + +     A+  Y+ M+  S
Sbjct: 98  TALITMYA--RCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKS 155

Query: 104 H---RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
               + DA+T S AL AC+ V  + +  +I +  +  G+ +D+++   L+++Y+K G + 
Sbjct: 156 PEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLE 215

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           SA+KVFD +  RD+ +WN +I+G A+   A++A++LF+RM      KPN VT +G L AC
Sbjct: 216 SARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDP-KPNVVTFIGLLTAC 274

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC-GLLDKAFEVFDNIKCRKSLVT 279
            +L   ++G  IH  ++E   + ++V+ N +++MY KC   L++A +VF+ ++ R  ++T
Sbjct: 275 TNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTR-DVIT 333

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           WN +++A+  +G    AL++F+QM    V P++++    L AC   G    G  +   +A
Sbjct: 334 WNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIA 393

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +   K ++    S++++  R G L +   +  ++     +V W TL+ A   +G
Sbjct: 394 SGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIR-DKSLVSWSTLIAAYAQHG 446



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 194/373 (52%), Gaps = 10/373 (2%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           +A A A+F  I  P++  +  ++   A +     A+ +YR+M+    R D      A+  
Sbjct: 8   VADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGV 67

Query: 118 CARVLALFETLQIHSHVLRHGFLA-DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           C+    L +   +H+ +L    L  D +LGT L+ +YA+  ++  A+K FDEMG + + +
Sbjct: 68  CSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT 127

Query: 177 WNALIAGLAQGNLASEAVDLFKRM--KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
           WNALIAG ++      A+ +++ M  K     KP+ +T   AL AC  +G   +G +I  
Sbjct: 128 WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEA 187

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
                    + +V NA+I+MY+KCG L+ A +VFD +K R  ++ WNTM+  +A  G   
Sbjct: 188 RTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR-DVIAWNTMISGYAKQGAAT 246

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
           +ALELF++MG    KP+ V+++  L AC +   ++ G  +   +   G + ++     ++
Sbjct: 247 QALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLL 306

Query: 355 DLLGR-AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASRKLVEMGSNN 412
           ++  + +  L+EA  + + +    D++ W  L+ A   YG  + A +I  +  +E   N 
Sbjct: 307 NMYTKCSSSLEEARQVFERLRT-RDVITWNILIVAYVQYGQAKDALDIFKQMQLE---NV 362

Query: 413 CGDFVLLSNLYAA 425
             + + LSN+ +A
Sbjct: 363 APNEITLSNVLSA 375



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 163/334 (48%), Gaps = 14/334 (4%)

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
           +Y K G +  A  VF  +   +  SW  ++A  A+     EA+  ++RM +EG  +P+  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEG-LRPDGA 59

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
             + A+  C      K+G  +H  I E + L+ ++++  A+I MYA+C  L+ A + FD 
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM---GRAGVKPDDVSYLAALCACNHAGL 327
           +  +K+LVTWN ++  ++ +GD   AL++++ M      G+KPD +++ +AL AC+  G 
Sbjct: 120 MG-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGD 178

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           +  G  +       G   +     +++++  + G L+ A  +   +    D++ W T++ 
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLK-NRDVIAWNTMIS 237

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNC-GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK 446
               Y     A  A      MG N+   + V    L  A    +D+ + R    +R VK+
Sbjct: 238 G---YAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAI--HRKVKE 292

Query: 447 VPGFSYIEVGGVIHKFFTSDKSHV-KWREIYEKL 479
               S + +G V+   +T   S + + R+++E+L
Sbjct: 293 HGYESDLVIGNVLLNMYTKCSSSLEEARQVFERL 326


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/520 (37%), Positives = 308/520 (59%), Gaps = 10/520 (1%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F  +       +N ++ G A +      +   R+M   + + D+ T S  L   A  + 
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           +    +IH   +R G  AD  + ++L+D+YAK   +  + +VF  +  RD  SWN++IAG
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAG 314

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q  L  E +  F++M M  + KP   +    + AC HL     G ++H YI     D 
Sbjct: 315 CVQNGLFDEGLRFFRQMLMAKI-KPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDE 373

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N+ + ++++DMYAKCG +  A ++FD ++ R  +V+W  M+M  A+HG  P A+ELFEQM
Sbjct: 374 NIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQAPDAIELFEQM 432

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGR 362
              G+K       A L AC+H GLVD+  + FNSM  + G+ P ++HY +V DLLGRAGR
Sbjct: 433 ETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGR 485

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L+EA D +  + +G    +W TLL AC+++ +++MAE  + +++E+  NN G ++LL+N+
Sbjct: 486 LEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANI 545

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           Y+A  RW +  + R +M+   ++K P  S+IEV   ++ F   D+SH  + +I E ++ +
Sbjct: 546 YSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVL 605

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
           +  +++ GY   TS V HD+ EE+K+  +C HSE+LA+ FG+I+T    +I+V KNLR+C
Sbjct: 606 VELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVC 665

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH   K ISK+  REI+VRD  RFH FK+G CSC DYW
Sbjct: 666 TDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 163/373 (43%), Gaps = 35/373 (9%)

Query: 53  SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           S +N L  +  LF  I+ P    + +V+R       P  ++  +  ML      D     
Sbjct: 51  SHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFP 110

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV-------------GEI 159
             LK+CA ++ L     +H +++R G   D   G  L+++Y+K+             GE+
Sbjct: 111 SVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEV 170

Query: 160 V-------------------SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
                               S +K+F+ M  +D+ SWN +IAG A+  L  E + + + M
Sbjct: 171 FDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREM 230

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
               + KP+  T+   L           G +IH     + LD ++ V +++IDMYAKC  
Sbjct: 231 GGANL-KPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTR 289

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +  +  VF  +  R   ++WN+++     +G     L  F QM  A +KP   S+ + + 
Sbjct: 290 VADSCRVFTLLTERDG-ISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           AC H   +  G +L   +   G   N+    S+VD+  + G ++ A  I   + +  DMV
Sbjct: 349 ACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL-RDMV 407

Query: 381 LWQTLLGACQLYG 393
            W  ++  C L+G
Sbjct: 408 SWTAMIMGCALHG 420


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/508 (40%), Positives = 303/508 (59%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++ GL  S +   A   + +ML+     D +T    L ACAR   L    +IH+  +
Sbjct: 315 WNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAV 374

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + G ++D   G  L+++Y+K G +  A++VFD M  RD+ SW AL+ G A      E+  
Sbjct: 375 KDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFS 434

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
            FK+M  +GV + N++T +  L AC +  A K G +IH  + +  +  ++ V NA++ MY
Sbjct: 435 TFKKMLQQGV-EANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMY 493

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            KCG ++ A  V + +  R  +VTWNT++   A +G G  AL+ FE M    ++P+  ++
Sbjct: 494 FKCGSVEDAIRVSEGMSTR-DVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTF 552

Query: 316 LAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +  + AC    LV++G R F SM  + G+ P  KHY  +VD+L RAG L EA D++ ++ 
Sbjct: 553 VNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMP 612

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
                 +W  LL AC+ +G+VE+ E A+ + +++   N G +V LS +YAA   W DV +
Sbjct: 613 FKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAK 672

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +RK MK R VKK PG S+IEV G +H F   D+SH +  EIY +L+ +  +IK  GY   
Sbjct: 673 LRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPD 732

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T  V+HD+ +E KE A+C+HSEKLA+A+GLIST   T I+V KNLR+C DCH   K ISK
Sbjct: 733 TRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISK 792

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +  REII RD  RFH FK+G CSC DYW
Sbjct: 793 ITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 185/387 (47%), Gaps = 7/387 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+  H+   G  +  ++ + + +  +     +NE   A  LF + +  S   +N ++ G
Sbjct: 64  KQVHEHILRFG-MKPNVYIINTLLKLYVHCGSVNE---ARRLFDKFSNKSVVSWNVMISG 119

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            AH      A   +  M +     D  T    L AC+   AL    ++H  V+  G   +
Sbjct: 120 YAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANN 179

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
           A +G  L+ +YAK G +  A++VFD M  RD  SW  L    A+   A E++  +  M  
Sbjct: 180 ATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ 239

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           EGV +P+ +T +  L+ACG L A ++G +IH  I E     +V V  A+  MY KCG + 
Sbjct: 240 EGV-RPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVK 298

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A EVF+ +  R  ++ WNTM+      G    A  +F +M +  V PD V+YLA L AC
Sbjct: 299 DAREVFECLPNR-DVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSAC 357

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
              G +  G  +       G+  +++   +++++  +AG +++A  +   +    D+V W
Sbjct: 358 ARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPK-RDVVSW 416

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMG 409
             L+G     G V  +    +K+++ G
Sbjct: 417 TALVGGYADCGQVVESFSTFKKMLQQG 443



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 160/316 (50%), Gaps = 9/316 (2%)

Query: 89  PTNAVLWYRQ--MLRGSHRSDALTCSF----ALKACARVLALFETLQIHSHVLRHGFLAD 142
           PT+   WY    +L+  H+  +   S+     L++C +   L    Q+H H+LR G   +
Sbjct: 19  PTSTDGWYAPADVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPN 78

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +  TLL +Y   G +  A+++FD+   + + SWN +I+G A   L  EA +LF  M+ 
Sbjct: 79  VYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQ 138

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           EG  +P++ T +  L+AC    A   G ++H  + E  L  N  V NA+I MYAKCG + 
Sbjct: 139 EG-LEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVR 197

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VFD +  R   V+W T+  A+A  G    +L+ +  M + GV+P  ++Y+  L AC
Sbjct: 198 DARRVFDAMASRDE-VSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSAC 256

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
                ++ G ++   +       +++   ++  +  + G +++A ++ + +    D++ W
Sbjct: 257 GSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP-NRDVIAW 315

Query: 383 QTLLGACQLYGDVEMA 398
            T++G     G +E A
Sbjct: 316 NTMIGGLVDSGQLEEA 331



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 162/349 (46%), Gaps = 27/349 (7%)

Query: 6   ALLQKCSSNGAVS---HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           A+L  C+  G ++    IH + ++  L +  +F + L  + SK            +  A 
Sbjct: 352 AILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKA---------GSMKDAR 402

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F ++       + A++ G A   +   +   +++ML+    ++ +T    LKAC+  +
Sbjct: 403 QVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPV 462

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           AL    +IH+ V++ G  AD  +   L+ +Y K G +  A +V + M  RD+ +WN LI 
Sbjct: 463 ALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIG 522

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           GLAQ     EA+  F+ MK E + +PN  T +  ++AC      +EG +    +R+   D
Sbjct: 523 GLAQNGRGLEALQKFEVMKSEEM-RPNATTFVNVMSACRVRNLVEEGRRQFASMRK---D 578

Query: 243 MNVVVCN----AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             +V        ++D+ A+ G L +A +V   +  + S   W  ++ A   HG+    +E
Sbjct: 579 YGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGN----VE 634

Query: 299 LFEQMGRAGVK--PDDV-SYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
           + EQ     +K  P +  +Y++       AG+  D  +L   M   GVK
Sbjct: 635 IGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVK 683


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/508 (39%), Positives = 303/508 (59%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++ G A   +   A+ + R+M R   R D+ T S  L   A    +   L++H    
Sbjct: 138 WNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAF 197

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R+GF +D  +G++L+D+YA       + KVFD + VRD   WN+L+AG AQ     EA+ 
Sbjct: 198 RNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALG 257

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +F+RM   GV +P  VT    +  CG+L + + G ++H Y+     + NV + +++IDMY
Sbjct: 258 IFRRMLQAGV-RPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMY 316

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            KCG +  A  +FD +     +V+W  M+M +A+HG    AL LFE+M     KP+ +++
Sbjct: 317 CKCGEISIAHCIFDKMS-SPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITF 375

Query: 316 LAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           LA L AC+HAGLVD G + F SM+N  G+ P ++H+ ++ D LGRAG L EA + +  + 
Sbjct: 376 LAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQ 435

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +     +W TLL AC+++ +  +AE  ++K++E+   + G  V+LSN+Y+A  RW++   
Sbjct: 436 IKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAH 495

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R++M+ + +KK P  S+IEV   +H F   D+SH  +  I + L+    ++   G+   
Sbjct: 496 LRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPN 555

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T  V  DI EE K   LC HSEKLA+ FG+IST   T I+V KNLR+C DCH V K ISK
Sbjct: 556 TEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFISK 615

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +REI+VRD  RFH FKDG CSC D+W
Sbjct: 616 LADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 155/330 (46%), Gaps = 23/330 (6%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG---------------- 157
           ALK+CA +        +H+  +R G  AD      LL++Y KV                 
Sbjct: 56  ALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPG 115

Query: 158 ---EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
                 S +KVFDEM  RD+ SWN L+ G A+     EA+   ++M  EG F+P+  T+ 
Sbjct: 116 SSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREG-FRPDSFTLS 174

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L         K G ++H +      D +V V +++IDMYA C   D + +VFDN+  R
Sbjct: 175 TVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR 234

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
             ++ WN+++   A +G    AL +F +M +AGV+P  V++ + +  C +   +  G +L
Sbjct: 235 DHIL-WNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQL 293

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
              +   G + N+    S++D+  + G +  A  I   +S   D+V W  ++    L+G 
Sbjct: 294 HAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMS-SPDVVSWTAMIMGYALHGP 352

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
              A +   ++ E+G+        L+ L A
Sbjct: 353 AREALVLFERM-ELGNAKPNHITFLAVLTA 381


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/615 (37%), Positives = 340/615 (55%), Gaps = 54/615 (8%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL  CS+    + +H   L+     TG   +    V  ++   YA S    L  + AL 
Sbjct: 294 SLLTSCSTARRAAELHAAVLR-----TGLLDATDRAVAFRLQRAYAAS--GRLDLSLALL 346

Query: 66  RQINAPSTNDFNAVLRGLAHSSK----PTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
           R+   P+   + + +   AHSS+    P  A+L    ML       A T S +L AC   
Sbjct: 347 RRTRDPTAIFYTSAIH--AHSSRGHRLPALALL--SDMLAQGLLPTAHTLSASLPACR-- 400

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM------------ 169
             L     +H +  +     D+ + T LL +YA+ G+  +A+ +FD+M            
Sbjct: 401 -GLSPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAM 459

Query: 170 --------------------GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN 209
                                 +D   WNA+I G  Q    +EA+ LF+RM   GV +P+
Sbjct: 460 LTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGV-EPD 518

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIR-EERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           EVTV+  L+A   LG  + G  +H Y++   R+ ++V V  A+IDMY KCG L  A +VF
Sbjct: 519 EVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVF 578

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
             I   K +V WN M+  +A+HGD  +ALE+F Q    G+ P D++++  L AC+H+G+V
Sbjct: 579 HGIG-DKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMV 637

Query: 329 DDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           ++G   F SM    G+ P ++HYG +VDLLGRAG ++EA  +V+S+ +  D V+W +LL 
Sbjct: 638 EEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLA 697

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           AC+L+ ++ + +  +  LV  G  N G ++LLSN+YAA   W +V RVR  MK   ++K 
Sbjct: 698 ACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKE 757

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
           PG S IE+   +++F   D SH +  EIY  LD++   +KE+G+   T  VLHD+ E  K
Sbjct: 758 PGCSSIEIDREVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATK 817

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           E AL  HSEKLA+AFGLIST    +I++ KNLR C DCH V+KLIS++  R+I+ RDR R
Sbjct: 818 EKALAVHSEKLALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNR 877

Query: 568 FHRFKDGACSCKDYW 582
           FH F DG+CSC DYW
Sbjct: 878 FHHFVDGSCSCGDYW 892


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/535 (39%), Positives = 312/535 (58%), Gaps = 9/535 (1%)

Query: 51  ALSPLNELAYAHALFRQIN-APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL 109
           ALS   E+  A +LF  +    +   + A++ G   +     AV  + QM R   + +  
Sbjct: 339 ALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHF 398

Query: 110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
           T S  L     V       ++H+ V++  +   + +GT LLD Y K+G  + A KVF+ +
Sbjct: 399 TYSAILTVHYPVFVS----EMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEII 454

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH-LGAWKE 228
             +D+ +W+A++AG AQ     EA  LF ++  EG+ KPNE T    + AC     A ++
Sbjct: 455 EAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGI-KPNEFTFSSVINACASPTAAAEQ 513

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G + H Y  + RL+  + V +A++ MYAK G +D A EVF   K R  LV+WN+M+  ++
Sbjct: 514 GKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKER-DLVSWNSMISGYS 572

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNM 347
            HG   +ALE+F++M +  +  D V+++  + AC HAGLV+ G + FNSM N   + P M
Sbjct: 573 QHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTM 632

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
           KHY  ++DL  RAG L++A  I+  +       +W+TLLGA +++ +VE+ E+A+ KL+ 
Sbjct: 633 KHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLIS 692

Query: 408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDK 467
           +   +   +VLLSN+YAA   W +   VRK M  R VKK PG+S+IEV    + F   D 
Sbjct: 693 LQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDL 752

Query: 468 SHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
           +H    +IY KL E+  ++K+ GY   T  V HDI +E+KE  L +HSE+LA+AFGLI+T
Sbjct: 753 THPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIAT 812

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
                IQ+ KNLR+C DCH+  KL+S V  R I+VRD  RFH FKDG CSC DYW
Sbjct: 813 PPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 170/342 (49%), Gaps = 8/342 (2%)

Query: 61  AHALFRQI-NAPST-NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
           AH LF +I + P+T  + N +L   +   +   A+  +  +L  S + D  T S     C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           A  L      Q+H   ++ G +    +GT+L+D+Y K   +   ++VFDEMG R++ SW 
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           +L+AG +   L     +LF +M+ EGV  PN  TV   +AA  + G    G ++H  + +
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVL-PNRYTVSTVIAALVNEGVVGIGLQVHAMVVK 222

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
              +  + V N++I +Y++ G+L  A +VFD ++ R   VTWN+M+  +  +G      E
Sbjct: 223 HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR-DWVTWNSMIAGYVRNGQDLEVFE 281

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG-VRLFNSMA-NCGVKPNMKHYGSVVDL 356
           +F +M  AGVKP  +++ + + +C  A L +   V+L    A   G   +     +++  
Sbjct: 282 IFNKMQLAGVKPTHMTFASVIKSC--ASLRELALVKLMQCKALKSGFTTDQIVITALMVA 339

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           L +   + +A  +   +  G ++V W  ++  C   G  + A
Sbjct: 340 LSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQA 381



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 12/285 (4%)

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
           LQ+H+ V++HGF     +  +L+ +Y+++G +  A+ VFD+M +RD  +WN++IAG  + 
Sbjct: 214 LQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRN 273

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
               E  ++F +M++ GV KP  +T    + +C  L        +     +     + +V
Sbjct: 274 GQDLEVFEIFNKMQLAGV-KPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIV 332

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
             A++   +KC  +D A  +F  ++  K++V+W  M+     +G   +A+ LF QM R G
Sbjct: 333 ITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREG 392

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV-VDLLGRAGRLQEA 366
           VKP+  +Y +A+   ++   V +       M    +K N +   SV   LL    +L   
Sbjct: 393 VKPNHFTY-SAILTVHYPVFVSE-------MHAEVIKTNYERSSSVGTALLDAYVKLGNT 444

Query: 367 CDIVKSVSM--GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            D VK   +    D++ W  +L      G+ E A     +L++ G
Sbjct: 445 IDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEG 489



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 178/381 (46%), Gaps = 21/381 (5%)

Query: 25  LQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLA 84
           LQ H         +  PV + +I  Y  S L  L  A  +F ++       +N+++ G  
Sbjct: 214 LQVHAMVVKHGFEEAIPVFNSLISLY--SRLGMLRDARDVFDKMEIRDWVTWNSMIAGYV 271

Query: 85  HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA--RVLALFETLQIHSHVLRHGFLAD 142
            + +       + +M     +   +T +  +K+CA  R LAL + +Q  +  L+ GF  D
Sbjct: 272 RNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKA--LKSGFTTD 329

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGV-RDIASWNALIAGLAQGNLASEAVDLFKRMK 201
            ++ T L+   +K  E+  A  +F  M   +++ SW A+I+G  Q     +AV+LF +M+
Sbjct: 330 QIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMR 389

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            EGV KPN  T    L    H   +    ++H  + +   + +  V  A++D Y K G  
Sbjct: 390 REGV-KPNHFTYSAILTV--HYPVFV--SEMHAEVIKTNYERSSSVGTALLDAYVKLGNT 444

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
             A +VF+ I+  K L+ W+ M+  +A  G+   A +LF Q+ + G+KP++ ++ + + A
Sbjct: 445 IDAVKVFEIIEA-KDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINA 503

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKH----YGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           C       +  + F++ A   +K  + +      ++V +  + G +  A ++ K      
Sbjct: 504 CASPTAAAEQGKQFHAYA---IKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKR-QKER 559

Query: 378 DMVLWQTLLGACQLYGDVEMA 398
           D+V W +++     +G  + A
Sbjct: 560 DLVSWNSMISGYSQHGQAKKA 580


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/561 (36%), Positives = 340/561 (60%), Gaps = 8/561 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +Q+ A + T  +++  +F + ++++  Y       L  A  +  ++   S   +  ++ G
Sbjct: 30  RQVHARMIT-ARYRPAVF-LGTRLVTMYVRC--GALDDARNVLDRMPERSVVSWTTMISG 85

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            + + +   A+  + +MLR     +  T +  L +C+   ++++  Q+HS +++  F + 
Sbjct: 86  YSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESH 145

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G++LLD+YAK   I  A++VFD +  RD+ S  A+I+G AQ  L  EA+DLF+++  
Sbjct: 146 MFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYS 205

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           EG+ + N VT    + A   L +   G ++H  I  + L   V + N++IDMY+KCG L 
Sbjct: 206 EGM-QCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLL 264

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            +  VFDN+   +S+V+WN M+M +  HG G   + LF+ + +  VKPD V+ LA L  C
Sbjct: 265 YSRRVFDNM-LERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGC 322

Query: 323 NHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +H GLVD+G+ +F+++        +  HYG ++DLLGR+GRL++A ++++++   +   +
Sbjct: 323 SHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSI 382

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W +LLGAC+++ +V + E+ ++KL+EM   N G++V+LSN+YAA   W DV +VRK M  
Sbjct: 383 WGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLE 442

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           + V K PG S+I +  VIH F +S++ H   ++I  K+ EI   IK  G+    SCVLHD
Sbjct: 443 KTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHD 502

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           + +E+KE  L  HSEKLA+ FGL++T    +I+V KNLRIC DCH+  K +SKVY REI 
Sbjct: 503 VDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREIS 562

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           +RD+ RFH    G C+C DYW
Sbjct: 563 LRDKNRFHLLTHGNCTCGDYW 583



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 128/250 (51%), Gaps = 2/250 (0%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           A+ AC    AL+E  Q+H+ ++   +     LGT L+ +Y + G +  A+ V D M  R 
Sbjct: 16  AITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERS 75

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           + SW  +I+G +Q     EA+DLF +M   G   PNE T+   L +C    +  +G ++H
Sbjct: 76  VVSWTTMISGYSQTERHVEALDLFIKMLRAGCI-PNEYTLATVLTSCSGPQSIYQGKQVH 134

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
             + +   + ++ V ++++DMYAK   + +A  VFD +   + +V+   ++  +A  G  
Sbjct: 135 SLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP-ERDVVSCTAIISGYAQKGLD 193

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             AL+LF Q+   G++ + V++   + A +    +D G ++   +    +   +    S+
Sbjct: 194 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 253

Query: 354 VDLLGRAGRL 363
           +D+  + G+L
Sbjct: 254 IDMYSKCGKL 263


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 342/587 (58%), Gaps = 40/587 (6%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K L  H    G   S LF V+   I  ++L  L  + YA  +F   +      +N VL G
Sbjct: 155 KVLLNHAVIHGFLDSNLF-VQKGFIHLFSLCGL--VNYARKIFDMGDGWEVVTWNVVLSG 211

Query: 83  LAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
                +   +   + +M +       +++T    L AC+++  L     I++  ++ G +
Sbjct: 212 YNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIV 271

Query: 141 -ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG------------ 187
             + +L   L+D++A  GE+ +A+ VFDEM  RD+ SW +++ G A              
Sbjct: 272 EPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQ 331

Query: 188 -------------------NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
                              N   E + LF+ M+M  V KP+E T++  L AC HLGA + 
Sbjct: 332 MPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNV-KPDEFTMVSILTACAHLGALEL 390

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G+    YI + ++  +  + NA+IDMY KCG ++KA ++F+ ++ +K   TW  M++  A
Sbjct: 391 GEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ-KKDKFTWTAMIVGLA 449

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNM 347
            +G G  AL +F  M  A V PD+++Y+  +CAC H GLV  G   F++MA   G+KPN+
Sbjct: 450 NNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNL 509

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
            HYG +VDLLGRAG L+EA +++ ++ +  + ++W +LLGAC+++ +V++AE+A+ +++E
Sbjct: 510 THYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILE 569

Query: 408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDK 467
           +   N   +VLL N+YAA ++W ++  VRK M  R +KK+PG S +E+ G++++F   DK
Sbjct: 570 LEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDK 629

Query: 468 SHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
           SH + +EIY KL+ +   +   GY+  TS V  D+GEE+KE AL  HSEKLA+A+ LIS+
Sbjct: 630 SHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISS 689

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
            +  +I++ KNLR+C DCH +  ++SKVYNRE+IVRD+ RFH F+ G
Sbjct: 690 GKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 196/416 (47%), Gaps = 45/416 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL+ C++   ++ IH + ++  L++   F +K       +I F       ++ YA  +F
Sbjct: 40  SLLETCNTMYEINQIHSQTIKTGLSSNHLFLTK-------VIIFCCTKESGDVYYARKVF 92

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            +I  PS   +N +++G +  +   + V  Y+ ML  + + D  T  F LK   + +AL 
Sbjct: 93  DEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALK 152

Query: 126 ETLQIHSHVLRHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               + +H + HGFL ++  +    + +++  G +  A+K+FD     ++ +WN +++G 
Sbjct: 153 YGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGY 212

Query: 185 AQGNLASEAVDLFKRM--KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH-EYIREERL 241
            +     E+  LF  M  K E V  PN VT++  L+AC  L     G  I+ +YI+E  +
Sbjct: 213 NRFKRYEESKRLFIEMEKKCECV-SPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIV 271

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA------------- 288
           + N+++ NA+IDM+A CG +D A  VFD +K R  +++W ++V  FA             
Sbjct: 272 EPNLILENALIDMFASCGEMDAARGVFDEMKTR-DVISWTSIVTGFANTCRIDLARKYFD 330

Query: 289 -----------VHGDG-------PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
                         DG          L LF  M  + VKPD+ + ++ L AC H G ++ 
Sbjct: 331 QMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALEL 390

Query: 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           G      +    +K +     +++D+  + G +++A  I   +    D   W  ++
Sbjct: 391 GEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ-KKDKFTWTAMI 445


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/513 (38%), Positives = 307/513 (59%), Gaps = 3/513 (0%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           P    +N ++ G         A+ ++++M       +  T S AL AC +V  L    +I
Sbjct: 462 PDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEI 521

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H +VLR+       +G+ L+ +Y+    +  A  VF E+  RD+  WN++I+  AQ   +
Sbjct: 522 HGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRS 581

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
             A+DL + M +  V + N VT++ AL AC  L A ++G +IH++I    LD    + N+
Sbjct: 582 VNALDLLREMNLSNV-EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS 640

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           +IDMY +CG + K+  +FD +  ++ LV+WN M+  + +HG G  A+ LF+Q    G+KP
Sbjct: 641 LIDMYGRCGSIQKSRRIFD-LMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKP 699

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           + +++   L AC+H+GL+++G + F  M     + P ++ Y  +VDLL RAG+  E  + 
Sbjct: 700 NHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEF 759

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW 429
           ++ +    +  +W +LLGAC+++ + ++AE A+R L E+   + G++VL++N+Y+A  RW
Sbjct: 760 IEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRW 819

Query: 430 DDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEY 489
           +D  ++R  MK R V K PG S+IEV   +H F   D SH    +I  K++ + F IKE 
Sbjct: 820 EDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEI 879

Query: 490 GYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVI 549
           GY   T+ VL D+ E+EKE +LC HSEK+A+AFGLIST+  T +++ KNLR+C DCH   
Sbjct: 880 GYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSAT 939

Query: 550 KLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K ISKV  R+II+RD  RFH F DG CSC DYW
Sbjct: 940 KFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 192/419 (45%), Gaps = 50/419 (11%)

Query: 10  KCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQIN 69
           KC S+  +S +   Q+  +   +G  QS  F   SK   F  +  L +            
Sbjct: 277 KCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKY--FLEMGGLKDFK---------- 324

Query: 70  APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ 129
            P+   + A++ G   +     A+  +R+M+    + +++T + A+ AC  +  L    +
Sbjct: 325 -PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 383

Query: 130 IHSHVLRHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           IH + ++   L +D L+G +L+D YAK   +  A++ F  +   D+ SWNA++AG A   
Sbjct: 384 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 189 LASEAVDLFKRMKMEGV----------------------------------FKPNEVTVL 214
              EA++L   MK +G+                                    PN  T+ 
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTIS 503

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
           GALAACG +   K G +IH Y+    ++++  V +A+I MY+ C  L+ A  VF  +  R
Sbjct: 504 GALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTR 563

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
             +V WN+++ A A  G    AL+L  +M  + V+ + V+ ++AL AC+    +  G  +
Sbjct: 564 -DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEI 622

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
              +  CG+        S++D+ GR G +Q++  I   +    D+V W  ++    ++G
Sbjct: 623 HQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQ-RDLVSWNVMISVYGMHG 680



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 134/268 (50%), Gaps = 9/268 (3%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ C ++  L    Q+H+ ++ +G      LG+ LL+VY + G +  A+++FD+M  R++
Sbjct: 96  LQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNV 155

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW A++          E + LF  M  EGV +P+         AC  L  ++ G  +++
Sbjct: 156 FSWTAIMEMYCGLGDYEETIKLFYLMVNEGV-RPDHFVFPKVFKACSELKNYRVGKDVYD 214

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           Y+     + N  V  +++DM+ KCG +D A   F+ I+  K +  WN MV  +   G+  
Sbjct: 215 YMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIE-FKDVFMWNIMVSGYTSKGEFK 273

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSV 353
           +AL+    M  +GVKPD V++ A +     +G  ++  + F  M      KPN+  + ++
Sbjct: 274 KALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTAL 333

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +     AG  Q   D  +++S+   MVL
Sbjct: 334 I-----AGSEQNGYDF-EALSVFRKMVL 355



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 129/250 (51%), Gaps = 4/250 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V S +I  Y  S  + L  A ++F +++      +N+++   A S +  NA+   R+M  
Sbjct: 536 VGSALISMY--SGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNL 593

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
            +   + +T   AL AC+++ AL +  +IH  ++R G      +  +L+D+Y + G I  
Sbjct: 594 SNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQK 653

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           ++++FD M  RD+ SWN +I+         +AV+LF++ +  G+ KPN +T    L+AC 
Sbjct: 654 SRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL-KPNHITFTNLLSACS 712

Query: 222 HLGAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
           H G  +EG K  + ++ E  +D  V     ++D+ ++ G  ++  E  + +    +   W
Sbjct: 713 HSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVW 772

Query: 281 NTMVMAFAVH 290
            +++ A  +H
Sbjct: 773 GSLLGACRIH 782



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 150/360 (41%), Gaps = 44/360 (12%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           S+++E Y  +   E   A  +F +++  +   + A++            +  +  M+   
Sbjct: 128 SRLLEVYCQTGCVE--DARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEG 185

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
            R D        KAC+ +        ++ ++L  GF  ++ +  ++LD++ K G +  A+
Sbjct: 186 VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIAR 245

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           + F+E+  +D+  WN +++G        +A+     MK+ GV KP++VT           
Sbjct: 246 RFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGV-KPDQVT----------- 293

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI----KCRKSLVT 279
             W                      NA+I  YA+ G  ++A + F  +      + ++V+
Sbjct: 294 --W----------------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVS 329

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           W  ++     +G    AL +F +M   GVKP+ ++  +A+ AC +  L+  G  +     
Sbjct: 330 WTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCI 389

Query: 340 NC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
               +  ++    S+VD   +   ++ A      +   TD+V W  +L    L G  E A
Sbjct: 390 KVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQ-TDLVSWNAMLAGYALRGSHEEA 448


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/561 (36%), Positives = 340/561 (60%), Gaps = 8/561 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +Q+ A + T  +++  +F + ++++  Y       L  A  +  ++   S   +  ++ G
Sbjct: 62  RQVHARMIT-ARYRPAVF-LGTRLVTMYVRC--GALDDARNVLDRMPERSVVSWTTMISG 117

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            + + +   A+  + +MLR     +  T +  L +C+   ++++  Q+HS +++  F + 
Sbjct: 118 YSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESH 177

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G++LLD+YAK   I  A++VFD +  RD+ S  A+I+G AQ  L  EA+DLF+++  
Sbjct: 178 MFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYS 237

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           EG+ + N VT    + A   L +   G ++H  I  + L   V + N++IDMY+KCG L 
Sbjct: 238 EGM-QCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLL 296

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            +  VFDN+   +S+V+WN M+M +  HG G   + LF+ + +  VKPD V+ LA L  C
Sbjct: 297 YSRRVFDNM-LERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGC 354

Query: 323 NHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +H GLVD+G+ +F+++        +  HYG ++DLLGR+GRL++A ++++++   +   +
Sbjct: 355 SHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSI 414

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W +LLGAC+++ +V + E+ ++KL+EM   N G++V+LSN+YAA   W DV +VRK M  
Sbjct: 415 WGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLE 474

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           + V K PG S+I +  VIH F +S++ H   ++I  K+ EI   IK  G+    SCVLHD
Sbjct: 475 KTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHD 534

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           + +E+KE  L  HSEKLA+ FGL++T    +I+V KNLRIC DCH+  K +SKVY REI 
Sbjct: 535 VDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREIS 594

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           +RD+ RFH    G C+C DYW
Sbjct: 595 LRDKNRFHLLTHGNCTCGDYW 615



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 128/250 (51%), Gaps = 2/250 (0%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           A+ AC    AL+E  Q+H+ ++   +     LGT L+ +Y + G +  A+ V D M  R 
Sbjct: 48  AITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERS 107

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           + SW  +I+G +Q     EA+DLF +M   G   PNE T+   L +C    +  +G ++H
Sbjct: 108 VVSWTTMISGYSQTERHVEALDLFIKMLRAGCI-PNEYTLATVLTSCSGPQSIYQGKQVH 166

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
             + +   + ++ V ++++DMYAK   + +A  VFD +   + +V+   ++  +A  G  
Sbjct: 167 SLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP-ERDVVSCTAIISGYAQKGLD 225

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             AL+LF Q+   G++ + V++   + A +    +D G ++   +    +   +    S+
Sbjct: 226 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 285

Query: 354 VDLLGRAGRL 363
           +D+  + G+L
Sbjct: 286 IDMYSKCGKL 295


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/565 (37%), Positives = 314/565 (55%), Gaps = 44/565 (7%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           ++  A ++F +++      +NA++ G  HS     A   +R+M+      D  T +  L 
Sbjct: 243 DVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLS 302

Query: 117 ACARVLALFETLQIHSHVLR--HGFLADALL--GTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           ACA V        +H  ++R    F+ +A L     L+  Y+K G I  A+++FD M ++
Sbjct: 303 ACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLK 362

Query: 173 DIASWNALIAGLAQ-------------------------------GNLASEAVDLFKRMK 201
           D+ SWN +++G  +                               G  A +A+ LF +M+
Sbjct: 363 DVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMR 422

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            E V KP + T  GA+AACG LGA K G ++H +I +   + +    NA+I MYA+CG +
Sbjct: 423 SENV-KPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAV 481

Query: 262 DKA---FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
            +A   F V  NI      V+WN M+ A   HG G  ALELF++M   G+ PD +S+L  
Sbjct: 482 KEAHLMFLVMPNIDS----VSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTV 537

Query: 319 LCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           L ACNH+GLVD+G R F SM  + G+ P   HY  ++DLLGRAGR+ EA D++K++    
Sbjct: 538 LTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEP 597

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
              +W+ +L  C+  GD+E+   A+ +L +M   + G ++LLSN Y+A   W D  RVRK
Sbjct: 598 TPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRK 657

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            M++R VKK PG S+IE G  +H F   D  H +  E+Y+ L+ +  K+++ GY   T  
Sbjct: 658 LMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKV 717

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           VLHD+   +KE+ L  HSE+LAV FGL++     ++ V KNLRIC DCH  I  +SK   
Sbjct: 718 VLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVG 777

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           REI+VRD  RFH FKDG CSC +YW
Sbjct: 778 REIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 181/404 (44%), Gaps = 66/404 (16%)

Query: 16  AVSHIHIKQLQAHLTTTGQ--------FQSKLFPVR-SKIIEFYALSPLNELAYAHALFR 66
           A  H H+     HL T  +        F +   PV  + ++  YA +  + L  A + F 
Sbjct: 55  APPHPHLTLRLIHLYTLSRDLPAAATLFCADPCPVSATSLVAAYAAA--DRLPAAVSFFD 112

Query: 67  QINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSD--------------- 107
            +  P+  D    NAV+   A +S    AV  +R +L  GS R D               
Sbjct: 113 AV-PPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLP 171

Query: 108 --------ALTCSF-------ALKACARVLALF------ETLQIHSHVLRHGFLADALLG 146
                    L CS        AL  C  ++AL+      E  +    VL      D L  
Sbjct: 172 NISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTW 231

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           TT++  Y + G++ +A+ VF+E+  +    WNA+I+G     +A EA +LF+RM +E V 
Sbjct: 232 TTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERV- 290

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV------VCNAVIDMYAKCGL 260
             +E T    L+AC ++G +  G  +H  I   RL  N V      V NA++  Y+KCG 
Sbjct: 291 PLDEFTFTSVLSACANVGLFAHGKSVHGQII--RLQPNFVPEAALPVNNALVTFYSKCGN 348

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +  A  +FDN+   K +V+WNT++  +       +A+E+FE+M       +++S++  + 
Sbjct: 349 IAVARRIFDNMTL-KDVVSWNTILSGYVESSCLDKAVEVFEEMPYK----NELSWMVMVS 403

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
              H G  +D ++LFN M +  VKP    Y   +   G  G L+
Sbjct: 404 GYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALK 447



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 156/382 (40%), Gaps = 52/382 (13%)

Query: 3   NLNALLQKCSSNGAVSH---IH--IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE 57
              ++L  C++ G  +H   +H  I +LQ +            PV + ++ FY  S    
Sbjct: 296 TFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAAL-----PVNNALVTFY--SKCGN 348

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM---------------LRG 102
           +A A  +F  +       +N +L G   SS    AV  + +M               + G
Sbjct: 349 IAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHG 408

Query: 103 SHRSDAL------------TCSF----ALKACARVLALFETLQIHSHVLRHGFLADALLG 146
               DAL             C +    A+ AC  + AL    Q+H H+++ GF      G
Sbjct: 409 GFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAG 468

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
             L+ +YA+ G +  A  +F  M   D  SWNA+I+ L Q     EA++LF RM  EG++
Sbjct: 469 NALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIY 528

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV----CNAVIDMYAKCGLLD 262
            P+ ++ L  L AC H G   EG +   Y    + D  ++        +ID+  + G + 
Sbjct: 529 -PDRISFLTVLTACNHSGLVDEGFR---YFESMKRDFGIIPGEDHYTRLIDLLGRAGRIG 584

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
           +A ++   +    +   W  ++      GD        +Q+ +   +  D +Y+      
Sbjct: 585 EARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQ-HDGTYILLSNTY 643

Query: 323 NHAGLVDDGVRLFNSMANCGVK 344
           + AG   D  R+   M + GVK
Sbjct: 644 SAAGCWVDAARVRKLMRDRGVK 665


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/520 (38%), Positives = 315/520 (60%), Gaps = 4/520 (0%)

Query: 65   FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
            F ++++     +N+++ G A    P NA+  + ++   +   DA T    + ACA +  L
Sbjct: 488  FNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDL 547

Query: 125  FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG-VRDIASWNALIAG 183
             +   IH  +++ GF +D  +   L+D+YAK G + SA+ +F++    +D  +WN +IA 
Sbjct: 548  DQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607

Query: 184  LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
              Q   A EA+  F +M++E  F PN VT +  L A  +L A++EG   H  I +     
Sbjct: 608  YMQNGHAKEAISSFHQMRLEN-FHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLS 666

Query: 244  NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            N +V N++IDMYAKCG LD + ++F+ +   K  V+WN M+  +AVHG G RA+ LF  M
Sbjct: 667  NTLVGNSLIDMYAKCGQLDYSEKLFNEMD-HKDTVSWNAMLSGYAVHGHGDRAIALFSLM 725

Query: 304  GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGR 362
              + V+ D VS+++ L AC HAGLV++G ++F+SM++   +KP+++HY  +VDLLGRAG 
Sbjct: 726  QESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGL 785

Query: 363  LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
              E    +K + +  D  +W  LLG+C+++ +V++ E+A   LV++   N   FV+LS++
Sbjct: 786  FDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSI 845

Query: 423  YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
            YA   RW D G+ R  M +  +KK PG S++E+   +H F   DKSH +   ++   + +
Sbjct: 846  YAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTL 905

Query: 483  MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
            + K+++ GY    SCVL ++ EE+KE  L  HSE+LA+ F L++T   ++IQ+ KNLR+C
Sbjct: 906  LEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVC 965

Query: 543  RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             DCH   K ISK+  R IIVRD  RFH F+DG CSC DYW
Sbjct: 966  ADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 179/355 (50%), Gaps = 7/355 (1%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + +I  Y+L   ++   A ++F     PS   +N+++R    S +   A+  Y  M+   
Sbjct: 67  THLINLYSL--FHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG 124

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
              D  T +F LKAC   L L E +  H  + R G   D  +G  L+D+Y+K+G++  A+
Sbjct: 125 LEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAR 184

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           +VFD+M  RD+ +WNA+IAGL+Q     EAVD F+ M++ GV +P+ V++L        L
Sbjct: 185 EVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGV-EPSSVSLLNLFPGICKL 243

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
              +    IH Y+   R D +  V N +ID+Y+KCG +D A  VFD +   +  V+W TM
Sbjct: 244 SNIELCRSIHGYVF--RRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTM 300

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +  +A +G     LELF++M    V+ + VS ++A  A      ++ G  +        +
Sbjct: 301 MAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRI 360

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             ++     ++ +  + G  ++A  +   +  G D+V W  ++ A    G  E A
Sbjct: 361 DSDILVATPLMVMYAKCGETEKAKQLFWGLQ-GRDLVAWSAIIAALVQTGYPEEA 414



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 170/347 (48%), Gaps = 4/347 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I+ Y  S   ++  A  +F Q+       +  ++ G AH+      +  + +M  
Sbjct: 265 VSNGLIDLY--SKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL 322

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
           G+ R + ++   A  A A  + L +  +IH   L+    +D L+ T L+ +YAK GE   
Sbjct: 323 GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEK 382

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           AK++F  +  RD+ +W+A+IA L Q     EA+ LF+ M+ + + KPN VT++  L AC 
Sbjct: 383 AKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKM-KPNRVTLMSILPACA 441

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L   K G  IH +  +  +D ++    A++ MYAKCG    A   F+ +  R  +VTWN
Sbjct: 442 DLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWN 500

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
           +++  +A  GD   A+++F ++  + + PD  + +  + AC     +D G  +   +   
Sbjct: 501 SLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKL 560

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           G + +     +++D+  + G L  A  +        D V W  ++ A
Sbjct: 561 GFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 158/337 (46%), Gaps = 2/337 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E   A  LF  +       ++A++  L  +  P  A+  +++M     + + +T    L 
Sbjct: 379 ETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILP 438

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA +  L     IH   ++    +D   GT L+ +YAK G   +A   F+ M  RDI +
Sbjct: 439 ACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVT 498

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN+LI G AQ      A+D+F ++++  +  P+  T++G + AC  L    +G  IH  I
Sbjct: 499 WNSLINGYAQIGDPYNAIDMFYKLRLSAI-NPDAGTMVGVVPACALLNDLDQGTCIHGLI 557

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +   + +  V NA+IDMYAKCG L  A  +F+     K  VTWN ++ A+  +G    A
Sbjct: 558 VKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA 617

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           +  F QM      P+ V++++ L A  +     +G+     +   G   N     S++D+
Sbjct: 618 ISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDM 677

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
             + G+L  +  +   +    D V W  +L    ++G
Sbjct: 678 YAKCGQLDYSEKLFNEMDH-KDTVSWNAMLSGYAVHG 713



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 6/202 (2%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L +C  +  L   LQIH+ ++  GF     + T L+++Y+   +   A+ VFD       
Sbjct: 39  LSSCKHLNPL---LQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSR 94

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
             WN++I    +    +EA++++  M  +G+ +P++ T    L AC      +EG   H 
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGL-EPDKYTFTFVLKACTGALNLQEGVWFHG 153

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            I    L+ +V +   ++DMY+K G L +A EVFD +  ++ +V WN M+   +   D  
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAGLSQSEDPC 212

Query: 295 RALELFEQMGRAGVKPDDVSYL 316
            A++ F  M   GV+P  VS L
Sbjct: 213 EAVDFFRSMQLVGVEPSSVSLL 234


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/543 (36%), Positives = 318/543 (58%), Gaps = 38/543 (6%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G AH      A   +R+M+    + D  T +  +  CA         ++H++ L
Sbjct: 257 WNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFL 316

Query: 136 RH--GFLADALL--GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA------------ 179
           +       D  +     L+  Y K G++  A+++F++M  RD+ SWN             
Sbjct: 317 KTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMD 376

Query: 180 -------------------LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
                              +I+GLAQ   A EA+  F RMK++G F+P +    GA+ +C
Sbjct: 377 EAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQG-FEPCDYAFAGAIISC 435

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
             LG+ K G ++H  +     + ++   NA+I MYA+CG++D A  +F N+ C  + ++W
Sbjct: 436 SVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDA-ISW 494

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           N M+ A   HG G +A+ELFE+M + G+ PD +S+L  + AC+HAGLV +G + F+SM N
Sbjct: 495 NAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHN 554

Query: 341 C-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             GV P+ +HY  ++DLL RAG+  EA ++++S+       +W+ LL  C+++G++++  
Sbjct: 555 VYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGI 614

Query: 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
            A+ +L E+   + G +VLLSN+YA   +W+D+ +VRK M++R VKK PG S+IEV   +
Sbjct: 615 EAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKV 674

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H F   D +H + R+IY  L++++ ++++ GY   T CVLHD+  + KE+ L  HSEKLA
Sbjct: 675 HSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLA 734

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           VA+G +      +++VFKNLRIC DCH+  K +SKV  REI+VRD  RFH F+DG CSC 
Sbjct: 735 VAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 794

Query: 580 DYW 582
           DYW
Sbjct: 795 DYW 797



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 112/499 (22%), Positives = 203/499 (40%), Gaps = 120/499 (24%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LLQ C     +S+   + + AH+  +G FQ +   + +++I+ Y+ S  ++L YA  LF
Sbjct: 16  SLLQICCLQSPISYSLARPVHAHMIASG-FQPRGH-ILNRLIDIYSKS--SKLNYARYLF 71

Query: 66  RQINAP-------------STND--------------------FNAVLRGLAHSSKPTNA 92
            +I  P             +  D                    +NA++   +H+     A
Sbjct: 72  DEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAA 131

Query: 93  VLWYRQMLRGSHRSDALTCSFALKACARVLALFE-TLQIHSHVLRHG--FLADALLGTTL 149
           +  +  M R + R D  T +  L A A V    +   Q+H  V++ G  F+   L    L
Sbjct: 132 IELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVL--NAL 189

Query: 150 LDVYAKVGE---------IVSAKKVFDEMGVRDIASW----------------------- 177
           +  Y K            +  A+K+FDEM  RD  SW                       
Sbjct: 190 ISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGT 249

Query: 178 --------NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
                   NA+I+G A   L  EA ++F++M M  + + +E T    ++ C + G ++ G
Sbjct: 250 SKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKI-QLDEFTFTSVISVCANAGCFRLG 308

Query: 230 DKIHEY----IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD---------------- 269
            ++H Y    +     D+ + V NA+I  Y KCG +D A E+F+                
Sbjct: 309 KEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSG 368

Query: 270 --NIKC------------RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
             N++C             K++++W  M+   A  G    AL+ F +M   G +P D ++
Sbjct: 369 YVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAF 428

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA-CDIVKSVS 374
             A+ +C+  G +  G +L   +   G + ++    +++ +  R G +  A C  +    
Sbjct: 429 AGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPC 488

Query: 375 MGTDMVLWQTLLGACQLYG 393
           +  D + W  ++ A   +G
Sbjct: 489 V--DAISWNAMIAALGQHG 505



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 141/293 (48%), Gaps = 19/293 (6%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALKACA 119
           A + F ++   +   +  ++ GLA       A+ ++ +M L+G    D    + A+ +C+
Sbjct: 378 AKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCD-YAFAGAIISCS 436

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            + +L    Q+H+ V+R+G+ +    G  L+ +YA+ G + +A  +F  M   D  SWNA
Sbjct: 437 VLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNA 496

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +IA L Q    ++A++LF+ M  EG+  P+ ++ L  ++AC H G  KEG K  + +   
Sbjct: 497 MIAALGQHGQGTQAIELFEEMLKEGIL-PDRISFLTVISACSHAGLVKEGRKYFDSMH-- 553

Query: 240 RLDMNVVVCNA-------VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
               NV   N        +ID+  + G   +A EV +++        W  ++    +HG+
Sbjct: 554 ----NVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGN 609

Query: 293 GPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
               +E  E++    +KP  D +Y+        AG  +D  ++   M + GVK
Sbjct: 610 IDLGIEAAERLFE--LKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVK 660


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/620 (38%), Positives = 352/620 (56%), Gaps = 58/620 (9%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ALL  C+S    + IH   ++A   +  Q ++  F    ++   YA S    L  A AL 
Sbjct: 29  ALLAGCASASRAAEIHAAAVRA---SVDQDKAVAF----RLQRAYAAS--GRLDLAVALL 79

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTN--AVLWYRQMLRGSHR--SDALTCSFALKACARV 121
           R+   P+   + + +   AHSS+  +  A+    +ML   H     A T S +L AC   
Sbjct: 80  RRTPDPTAVFYTSAIH--AHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPACG-C 136

Query: 122 LALFETLQIHSHVLR-----HGFLADALLG---------------------------TTL 149
           LA+   L  H + ++       ++A ALLG                           T +
Sbjct: 137 LAVGRAL--HGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAM 194

Query: 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN 209
           L  YAK+G++  A+ +FD +  +D+  WNA++ G  Q    SEA+ LF++M   GV +P+
Sbjct: 195 LSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGV-EPD 253

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYI----REERLDMNVVVCNAVIDMYAKCGLLDKAF 265
           EV+V+ AL+A   LG  + G  +H ++    R  R+ +N  V  A++DMY KCG L++A 
Sbjct: 254 EVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAV 313

Query: 266 EVFDNIKC--RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
            VF ++     + +V WN M+  +A+HG    ALE F Q+   G+ P D++++  L AC+
Sbjct: 314 AVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACS 373

Query: 324 HAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           H+GLVD+G  LF +M    G+ P ++HYG +VDLLGRAGR++EA D+V+S+    D  +W
Sbjct: 374 HSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMW 433

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
            +LLGAC+L+ ++ + +  +  LV  G  N G +VLLSN+YAA  +W +VGRVR  M+  
Sbjct: 434 ASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRAS 493

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            V+K PG S +EVG  + +F   D+SH +  EIY KL+E+    +  G+   T  VLHD+
Sbjct: 494 GVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDL 553

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            +  KE AL  HSEKLA+AFGLIST   T I++ KNLR C DCH V+KL+S+   R+I+ 
Sbjct: 554 DDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVF 613

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RDR RFH F DG+CSC DYW
Sbjct: 614 RDRNRFHHFVDGSCSCGDYW 633


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/536 (39%), Positives = 318/536 (59%), Gaps = 20/536 (3%)

Query: 65  FRQINAP-STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
            R+ N P     + AV+ G +       A+  +RQM+      + +T    L ACA + A
Sbjct: 364 MRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGA 423

Query: 124 LFETLQIHSHVLRHGFLA----------DALLGTTLLDVYAKVGEIVSAKKVFDEMGV-- 171
             +  +IH++ L++  L           D ++   L+D+Y+K     +A+ +FD++ +  
Sbjct: 424 FSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEE 483

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKME--GVFKPNEVTVLGALAACGHLGAWKEG 229
           R++ +W  +I G AQ   +++A+ LF  M  E  GV  PN  T+   L AC HL A + G
Sbjct: 484 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV-APNAYTISCILMACAHLAAIRIG 542

Query: 230 DKIHEYI-REERLDMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
            +IH Y+ R  R + +   V N +IDMY+KCG +D A  VFD++  +KS ++W +M+  +
Sbjct: 543 KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGY 601

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPN 346
            +HG G  AL++F++M +AG  PDD+++L  L AC+H G+VD G+  F+SM A+ G+ P 
Sbjct: 602 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPR 661

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
            +HY   +DLL R+GRL +A   VK + M    V+W  LL AC+++ +VE+AE A  KLV
Sbjct: 662 AEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLV 721

Query: 407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSD 466
           EM + N G + L+SN+YA   RW DV R+R  MK   +KK PG S+++       FF  D
Sbjct: 722 EMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGD 781

Query: 467 KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIS 526
           +SH    +IY  L+ ++ +IK  GY   T+  LHD+ EEEK N L  HSEKLA+A+GL++
Sbjct: 782 RSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLT 841

Query: 527 TSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           TS    I++ KNLR+C DCH     ISK+ + EI+VRD  RFH FK+G+CSC  YW
Sbjct: 842 TSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 193/417 (46%), Gaps = 62/417 (14%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTN 91
           F+S +F   + +  +     L E   A  +F +I     +D   +N+++     SS    
Sbjct: 193 FESNVFICNALVAMYSRCGSLEE---ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 249

Query: 92  AVLWYRQMLRGSH------RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           A+  + +M    H      RSD ++    L AC  + A+ +T ++H + +R+G   D  +
Sbjct: 250 ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFV 309

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
           G  L+D YAK G + +A KVF+ M  +D+ SWNA++AG +Q      A +LFK M+ E +
Sbjct: 310 GNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENI 369

Query: 206 --------------------------FK--------PNEVTVLGALAACGHLGAWKEGDK 231
                                     F+        PN VT++  L+AC  LGA+ +G +
Sbjct: 370 PLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTE 429

Query: 232 IHEYIREERL----------DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC-RKSLVTW 280
           IH Y  +  L          D +++V NA+IDMY+KC     A  +FD+I    +++VTW
Sbjct: 430 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 489

Query: 281 NTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
             M+   A +GD   AL+LF +M     GV P+  +    L AC H   +  G ++   +
Sbjct: 490 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYV 549

Query: 339 ANCGVKPNMKHY--GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
                  +  ++    ++D+  + G +  A  +  S+S  +  + W +++    ++G
Sbjct: 550 LRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKS-AISWTSMMTGYGMHG 605



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 154/318 (48%), Gaps = 9/318 (2%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           YA  +  ++       +N ++R      +  +A+    +MLR   R D  T    LKAC 
Sbjct: 114 YALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACG 173

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---GVRDIAS 176
            + +       H  +  +GF ++  +   L+ +Y++ G +  A  +FDE+   G+ D+ S
Sbjct: 174 ELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVIS 233

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKP-NE----VTVLGALAACGHLGAWKEGDK 231
           WN++++   + + A  A+DLF +M +    KP NE    ++++  L ACG L A  +  +
Sbjct: 234 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 293

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +H          +V V NA+ID YAKCGL++ A +VF N+   K +V+WN MV  ++  G
Sbjct: 294 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVF-NMMEFKDVVSWNAMVAGYSQSG 352

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
           +   A ELF+ M +  +  D V++ A +   +  G   + + LF  M   G  PN     
Sbjct: 353 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 412

Query: 352 SVVDLLGRAGRLQEACDI 369
           SV+      G   +  +I
Sbjct: 413 SVLSACASLGAFSQGTEI 430



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 123/269 (45%), Gaps = 12/269 (4%)

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI-AGLAQGNLASEAVDLF 197
           F++   LGT ++  Y   G    A  V + +       WN LI   + QG L S A+++ 
Sbjct: 92  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDS-AINVS 150

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
            RM   G  +P+  T+   L ACG L +++ G   H  I     + NV +CNA++ MY++
Sbjct: 151 CRMLRAGT-RPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR 209

Query: 258 CGLLDKAFEVFDNIKCR--KSLVTWNTMVMAFAVHGDGPRALELFEQMG------RAGVK 309
           CG L++A  +FD I  R    +++WN++V A     +   AL+LF +M           +
Sbjct: 210 CGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNER 269

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
            D +S +  L AC     V     +  +    G  P++    +++D   + G ++ A  +
Sbjct: 270 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKV 329

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              +    D+V W  ++      G+ E A
Sbjct: 330 FNMMEF-KDVVSWNAMVAGYSQSGNFEAA 357


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/533 (39%), Positives = 326/533 (61%), Gaps = 10/533 (1%)

Query: 53  SPLNELAYAHALFRQINAPSTN-DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTC 111
           SP +   YA A+  +   P     +NAV+R +A  + P+ A+  +  M R +   D  T 
Sbjct: 43  SPPDTARYAAAVLLRFPIPGDPFPYNAVIRHVALHA-PSLALALFSHMHRTNVPFDHFTF 101

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
              LK+            IH+ VL+ GF ++  +   L++ Y   G + ++ K+FDEM  
Sbjct: 102 PLILKSSK-----LNPHCIHTLVLKLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPR 156

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKM-EGVFKPNEVTVLGALAACGHLGAWKEGD 230
           RD+ SW++LI+  A+  L  EA+ LF++M++ E    P+ V +L  ++A   LGA + G 
Sbjct: 157 RDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGI 216

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +H +I    +++ V + +A+IDMY++CG +D++ +VFD +  R ++VTW  ++   AVH
Sbjct: 217 WVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHR-NVVTWTALINGLAVH 275

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKH 349
           G G  ALE F  M  +G+KPD ++++  L AC+H GLV++G R+F+SM +  G++P ++H
Sbjct: 276 GRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEH 335

Query: 350 YGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           YG +VDLLGRAG + EA D V+ + +  + V+W+TLLGAC  +  + +AE A  ++ E+ 
Sbjct: 336 YGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKELD 395

Query: 410 SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
            ++ GD+VLLSN Y     W     VR +M+   + K PG S + +  V H+F + D SH
Sbjct: 396 PHHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSLVHIDQVAHEFVSGDNSH 455

Query: 470 VKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSE 529
            +W EI   L  ++  +K  GY   T  VLHDI EEEKE++L YHSEKLAVAF L+   +
Sbjct: 456 PQWEEITRFLGSVIDTVKLGGYTPSTKNVLHDIQEEEKEHSLGYHSEKLAVAFVLLYHRD 515

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             +I+V KNLRIC DCH  +K +S  ++R+I++RDR RFH F+ G+CSC+D+W
Sbjct: 516 RKTIRVIKNLRICYDCHSFMKHVSGFFDRDIVIRDRSRFHHFRKGSCSCRDFW 568


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/536 (39%), Positives = 318/536 (59%), Gaps = 20/536 (3%)

Query: 65  FRQINAP-STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
            R+ N P     + AV+ G +       A+  +RQM+      + +T    L ACA + A
Sbjct: 357 MRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGA 416

Query: 124 LFETLQIHSHVLRHGFLA----------DALLGTTLLDVYAKVGEIVSAKKVFDEMGV-- 171
             +  +IH++ L++  L           D ++   L+D+Y+K     +A+ +FD++ +  
Sbjct: 417 FSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEE 476

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKME--GVFKPNEVTVLGALAACGHLGAWKEG 229
           R++ +W  +I G AQ   +++A+ LF  M  E  GV  PN  T+   L AC HL A + G
Sbjct: 477 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV-APNAYTISCILMACAHLAAIRIG 535

Query: 230 DKIHEYI-REERLDMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
            +IH Y+ R  R + +   V N +IDMY+KCG +D A  VFD++  +KS ++W +M+  +
Sbjct: 536 KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGY 594

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPN 346
            +HG G  AL++F++M +AG  PDD+++L  L AC+H G+VD G+  F+SM A+ G+ P 
Sbjct: 595 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPR 654

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
            +HY   +DLL R+GRL +A   VK + M    V+W  LL AC+++ +VE+AE A  KLV
Sbjct: 655 AEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLV 714

Query: 407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSD 466
           EM + N G + L+SN+YA   RW DV R+R  MK   +KK PG S+++       FF  D
Sbjct: 715 EMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGD 774

Query: 467 KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIS 526
           +SH    +IY  L+ ++ +IK  GY   T+  LHD+ EEEK N L  HSEKLA+A+GL++
Sbjct: 775 RSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLT 834

Query: 527 TSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           TS    I++ KNLR+C DCH     ISK+ + EI+VRD  RFH FK+G+CSC  YW
Sbjct: 835 TSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 193/417 (46%), Gaps = 62/417 (14%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTN 91
           F+S +F   + +  +     L E   A  +F +I     +D   +N+++     SS    
Sbjct: 186 FESNVFICNALVAMYSRCGSLEE---ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 242

Query: 92  AVLWYRQMLRGSH------RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           A+  + +M    H      RSD ++    L AC  + A+ +T ++H + +R+G   D  +
Sbjct: 243 ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFV 302

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
           G  L+D YAK G + +A KVF+ M  +D+ SWNA++AG +Q      A +LFK M+ E +
Sbjct: 303 GNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENI 362

Query: 206 --------------------------FK--------PNEVTVLGALAACGHLGAWKEGDK 231
                                     F+        PN VT++  L+AC  LGA+ +G +
Sbjct: 363 PLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTE 422

Query: 232 IHEYIREERL----------DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC-RKSLVTW 280
           IH Y  +  L          D +++V NA+IDMY+KC     A  +FD+I    +++VTW
Sbjct: 423 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 482

Query: 281 NTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
             M+   A +GD   AL+LF +M     GV P+  +    L AC H   +  G ++   +
Sbjct: 483 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYV 542

Query: 339 ANCGVKPNMKHY--GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
                  +  ++    ++D+  + G +  A  +  S+S  +  + W +++    ++G
Sbjct: 543 LRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKS-AISWTSMMTGYGMHG 598



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 154/318 (48%), Gaps = 9/318 (2%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           YA  +  ++       +N ++R      +  +A+    +MLR   R D  T    LKAC 
Sbjct: 107 YALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACG 166

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---GVRDIAS 176
            + +       H  +  +GF ++  +   L+ +Y++ G +  A  +FDE+   G+ D+ S
Sbjct: 167 ELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVIS 226

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKP-NE----VTVLGALAACGHLGAWKEGDK 231
           WN++++   + + A  A+DLF +M +    KP NE    ++++  L ACG L A  +  +
Sbjct: 227 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 286

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +H          +V V NA+ID YAKCGL++ A +VF N+   K +V+WN MV  ++  G
Sbjct: 287 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVF-NMMEFKDVVSWNAMVAGYSQSG 345

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
           +   A ELF+ M +  +  D V++ A +   +  G   + + LF  M   G  PN     
Sbjct: 346 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 405

Query: 352 SVVDLLGRAGRLQEACDI 369
           SV+      G   +  +I
Sbjct: 406 SVLSACASLGAFSQGTEI 423



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 123/269 (45%), Gaps = 12/269 (4%)

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI-AGLAQGNLASEAVDLF 197
           F++   LGT ++  Y   G    A  V + +       WN LI   + QG L S A+++ 
Sbjct: 85  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDS-AINVS 143

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
            RM   G  +P+  T+   L ACG L +++ G   H  I     + NV +CNA++ MY++
Sbjct: 144 CRMLRAGT-RPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR 202

Query: 258 CGLLDKAFEVFDNIKCR--KSLVTWNTMVMAFAVHGDGPRALELFEQMG------RAGVK 309
           CG L++A  +FD I  R    +++WN++V A     +   AL+LF +M           +
Sbjct: 203 CGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNER 262

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
            D +S +  L AC     V     +  +    G  P++    +++D   + G ++ A  +
Sbjct: 263 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKV 322

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              +    D+V W  ++      G+ E A
Sbjct: 323 FNMMEF-KDVVSWNAMVAGYSQSGNFEAA 350


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/526 (38%), Positives = 313/526 (59%), Gaps = 3/526 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L+YA  +F  I + + N +NA++ G A SS P  ++  + QM       D  T    L A
Sbjct: 430 LSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSA 489

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C+++ +L    ++H  ++R+    D  +  ++L +Y   GE+ + + +FD M    + SW
Sbjct: 490 CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSW 549

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N +I G  Q      A+ LF++M + G+ +P  ++++    AC  L + + G + H Y  
Sbjct: 550 NTVITGHLQNGFPERALGLFRQMVLYGI-QPCGISMMTVFGACSLLPSLRLGREAHAYAL 608

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  L+ N  +  ++IDMYAK G + ++ +VF+ +K  KS  +WN M+M + +HG    A+
Sbjct: 609 KHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLK-EKSAASWNAMIMGYGMHGRAKEAI 667

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
           +LFE+M R G  PDD+++L  L ACNH+GL+ +G+R  + M ++ G+KPN+KHY  V+D+
Sbjct: 668 KLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDM 727

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           LGRAG+L  A  +   +S   D+ +W +LL  C+++ ++EM E  + KL  +      ++
Sbjct: 728 LGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENY 787

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSNLYA   +WDDV +VR+ MK   ++K  G S+IE+ G +  F   ++    + EI 
Sbjct: 788 VLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIK 847

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
                +  KI + GY   TS V HD+ EEEK   L  HSEKLA+ +GLI TSE T+++V+
Sbjct: 848 SLWSILEMKIWKMGYRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVY 907

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLRIC DCH+  KLISKV  REI+VRD  RFH F  G CSC DYW
Sbjct: 908 KNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 133/265 (50%), Gaps = 4/265 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKAC 118
           +  +F+  N  +   +N ++ G +            RQML GS   ++D +T   A+  C
Sbjct: 330 SQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
                L    ++H + L+  F+ D LL    +  YAK G +  A++VF  +  + + SWN
Sbjct: 390 FDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWN 449

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ALI G AQ +    ++D   +MK  G+  P+  TV   L+AC  L + + G ++H +I  
Sbjct: 450 ALIGGYAQSSDPRLSLDAHLQMKNSGLL-PDNFTVCSLLSACSKLKSLRLGKEVHGFIIR 508

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L+ ++ V  +V+ +Y  CG L     +FD ++   SLV+WNT++     +G   RAL 
Sbjct: 509 NWLERDLFVYLSVLSLYIHCGELCTVQVLFDAME-DNSLVSWNTVITGHLQNGFPERALG 567

Query: 299 LFEQMGRAGVKPDDVSYLAALCACN 323
           LF QM   G++P  +S +    AC+
Sbjct: 568 LFRQMVLYGIQPCGISMMTVFGACS 592



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 23/284 (8%)

Query: 44  SKIIEFYAL--SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           ++II  YA+  SP +    + + F  + + +   +NAV+   + +      +  + +M+ 
Sbjct: 124 TRIITMYAMCGSPDD----SRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMIS 179

Query: 102 GSHR-SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
            +H   D  T    +KACA +  +   L +H  V++ G + D  +G  L+  Y   G + 
Sbjct: 180 KTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVS 239

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
            A K+FD M  R++ SWN++I              +F     +G F P+  TV+  L  C
Sbjct: 240 DALKLFDIMPERNLVSWNSMIR-------------VFSDNGDDGAFMPDVATVVTVLPVC 286

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
                   G  +H +  +  LD  +VV NA++DMY+K G +  +  +F  +   K++V+W
Sbjct: 287 AREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIF-KLNNNKNVVSW 345

Query: 281 NTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYLAALCAC 322
           NTMV  F+  GD     +L  QM  G   VK D+V+ L A+  C
Sbjct: 346 NTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 2/235 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           EL     LF  +   S   +N V+ G   +  P  A+  +RQM+    +   ++      
Sbjct: 530 ELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFG 589

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC+ + +L    + H++ L+H    +A +  +++D+YAK G I  + KVF+ +  +  AS
Sbjct: 590 ACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAAS 649

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WNA+I G      A EA+ LF+ M+  G   P+++T LG L AC H G   EG +  + +
Sbjct: 650 WNAMIMGYGMHGRAKEAIKLFEEMQRTGR-NPDDLTFLGVLTACNHSGLLHEGLRYLDQM 708

Query: 237 REE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           +    L  N+     VIDM  + G LD A  V   +     +  WN+++    +H
Sbjct: 709 KSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIH 763



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 116/255 (45%), Gaps = 14/255 (5%)

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
           +D +L T ++ +YA  G    ++  FD +  +++  WNA+I+  ++  L  E +++F +M
Sbjct: 118 SDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKM 177

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
             +    P+  T    + AC  +     G  +H  + +  L  ++ V NA++  Y   G 
Sbjct: 178 ISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGF 237

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +  A ++FD I   ++LV+WN+M+  F+ +GD                 PD  + +  L 
Sbjct: 238 VSDALKLFD-IMPERNLVSWNSMIRVFSDNGDD------------GAFMPDVATVVTVLP 284

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
            C     +  G  +        +   +    +++D+  + G + ++  I K ++   ++V
Sbjct: 285 VCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFK-LNNNKNVV 343

Query: 381 LWQTLLGACQLYGDV 395
            W T++G     GD+
Sbjct: 344 SWNTMVGGFSAEGDI 358



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 8/182 (4%)

Query: 217 LAACGHLGAWKEGDKIHEYIR-EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
           L A G     + G KIH  +    RL  + V+C  +I MYA CG  D +   FD ++  K
Sbjct: 91  LQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRS-K 149

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           +L  WN ++ +++ +      LE+F +M  +  + PD+ ++   + AC  AG+ D G+ L
Sbjct: 150 NLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKAC--AGISDVGIGL 207

Query: 335 --FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
                +   G+  ++    ++V   G  G + +A  +   +    ++V W +++      
Sbjct: 208 AVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLF-DIMPERNLVSWNSMIRVFSDN 266

Query: 393 GD 394
           GD
Sbjct: 267 GD 268


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/430 (44%), Positives = 293/430 (68%), Gaps = 4/430 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            ++L  + K G +  A  +F EM  RD+ SWN+++A  AQ    +EA+ LF +M+  GV 
Sbjct: 132 NSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV- 190

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           KP E TV+  L+AC HLGA  +G  +H YI + R+++N +V  A++DMYAKCG +  A +
Sbjct: 191 KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQ 250

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ ++  K ++ WNT++   A+HG    A +LF++M  A V+P+D++++A L AC+HAG
Sbjct: 251 VFNAMES-KDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAG 309

Query: 327 LVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           +VD+G +L + M++  G++P ++HY  V+DLL RAG L+EA +++ ++ M  +      L
Sbjct: 310 MVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGAL 369

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LG C+++G+ E+ E+  ++L+ +   + G ++LLSN+YAA ++WDD  +VR  MK   + 
Sbjct: 370 LGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGIS 429

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKE-YGYAAGTSCVLHDIGE 504
           KVPG S IE+ G++H+F   D SH +  +IY+KL+EI  ++K   GY+A T  VL D+ E
Sbjct: 430 KVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEE 489

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
           E+KE+AL  HSEKLA+A+GL+      +I++ KNLR+CRDCH V KLISKVY REIIVRD
Sbjct: 490 EDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRD 549

Query: 565 RVRFHRFKDG 574
           R RFH F+DG
Sbjct: 550 RNRFHHFEDG 559



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 157/301 (52%), Gaps = 15/301 (4%)

Query: 109 LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE 168
           +T  F +KAC      +  L +H+HV++ GF  D+ +  +L+ +YA   ++ +AK++F  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
              RD+ SWNA+I G  +         +F RM    V   N  T++   A  G       
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWN--TIINGYAIVG------- 111

Query: 229 GDKIHEYIR--EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
             KI E  R  +E  + N+V  N+++  + KCG +++AF +F  + CR  +V+WN+M+  
Sbjct: 112 --KIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCR-DVVSWNSMLAC 168

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN 346
           +A  G    AL LF+QM   GVKP + + ++ L AC H G +D G+ L   + +  ++ N
Sbjct: 169 YAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVN 228

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
                ++VD+  + G++  A  +  ++    D++ W T++    ++G V+ A+   +++ 
Sbjct: 229 SIVGTALVDMYAKCGKISLATQVFNAME-SKDVLAWNTIIAGMAIHGHVKEAQQLFKEMK 287

Query: 407 E 407
           E
Sbjct: 288 E 288


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/438 (44%), Positives = 285/438 (65%), Gaps = 4/438 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           T +L  YAK+G +  A+++FD M  +D   WNA+I G  Q    +EA+ LF+ M   GV 
Sbjct: 200 TAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGV- 258

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIR-EERLDMNVVVCNAVIDMYAKCGLLDKAF 265
            P+EV ++ AL+A   LG  + G  +H Y++   R+ +N  V  A+IDMY KCG L+ A 
Sbjct: 259 DPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAV 318

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
            VF++I   K +V WN M+  +A+HGD  +ALE+F Q+   G+ P D++++  L AC+H+
Sbjct: 319 SVFNSIG-DKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHS 377

Query: 326 GLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
           GLVD+G + F SM     + P ++HYG +VDLLGRAG ++EA  +V+S+++  D V+W +
Sbjct: 378 GLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVS 437

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444
           LL AC+L+ ++ + +  +  LV  G  N G ++LLSN+YAA   W++V RVR  MK   +
Sbjct: 438 LLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGI 497

Query: 445 KKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
           +K PG S IEVG  +++F   D SH +  EIY  L+++   +KE G+   T  VLHD+ E
Sbjct: 498 QKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDE 557

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
             KE AL  HSEKLAVAFGLIST+   +I++ KNLR C DCH V+KLISK+  R+I+ RD
Sbjct: 558 VTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRD 617

Query: 565 RVRFHRFKDGACSCKDYW 582
           R RFH F DG+C+C DYW
Sbjct: 618 RNRFHHFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/438 (44%), Positives = 285/438 (65%), Gaps = 4/438 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           T +L  YAK+G +  A+++FD M  +D   WNA+I G  Q    +EA+ LF+ M   GV 
Sbjct: 199 TAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGV- 257

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIR-EERLDMNVVVCNAVIDMYAKCGLLDKAF 265
            P+EV ++ AL+A   LG  + G  +H Y++   R+ +N  V  A+IDMY KCG L+ A 
Sbjct: 258 DPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAV 317

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
            VF++I   K +V WN M+  +A+HGD  +ALE+F Q+   G+ P D++++  L AC+H+
Sbjct: 318 SVFNSIG-DKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHS 376

Query: 326 GLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
           GLVD+G + F SM     + P ++HYG +VDLLGRAG ++EA  +V+S+++  D V+W +
Sbjct: 377 GLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVS 436

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444
           LL AC+L+ ++ + +  +  LV  G  N G ++LLSN+YAA   W++V RVR  MK   +
Sbjct: 437 LLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGI 496

Query: 445 KKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
           +K PG S IEVG  +++F   D SH +  EIY  L+++   +KE G+   T  VLHD+ E
Sbjct: 497 QKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDE 556

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
             KE AL  HSEKLAVAFGLIST+   +I++ KNLR C DCH V+KLISK+  R+I+ RD
Sbjct: 557 VTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRD 616

Query: 565 RVRFHRFKDGACSCKDYW 582
           R RFH F DG+C+C DYW
Sbjct: 617 RNRFHHFVDGSCTCGDYW 634


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/561 (37%), Positives = 324/561 (57%), Gaps = 7/561 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ AH+  + ++ S +  V + + + Y          A  +F  ++      +N ++RG
Sbjct: 250 KQIHAHIVES-EYHSDV-RVSTALTKMYM--KCGAFKDAREVFECLSYRDVIAWNTMIRG 305

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              S +   A   + +ML      D  T +  L ACAR   L    +IH+   + G ++D
Sbjct: 306 FVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSD 365

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
              G  L+++Y+K G +  A++VFD M  RD+ SW  L+   A  +   E+   FK+M  
Sbjct: 366 VRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQ 425

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           +GV K N++T +  L AC +  A K G +IH  + +  L  ++ V NA++ MY KCG ++
Sbjct: 426 QGV-KANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVE 484

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VF+ +  R  +VTWNT++     +G G  AL+ +E M   G++P+  +++  L AC
Sbjct: 485 DAIRVFEGMSMR-DVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSAC 543

Query: 323 NHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
               LV++G R F  M+ + G+ P  KHY  +VD+L RAG L+EA D++ ++ +     +
Sbjct: 544 RVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAM 603

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W  LL AC+++ +VE+ E A+   +++   N G +V LS +YAA   W DV ++RK MK 
Sbjct: 604 WGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKE 663

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           R VKK PG S+IE+ G +H F   D+SH + +EIY +L+ +  ++K  GY   T  V+HD
Sbjct: 664 RGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHD 723

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           + +E KE A+C+HSEKLA+A+GLIST   T I++ KNLR+C DCH   K ISK+  REII
Sbjct: 724 LDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREII 783

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
            RD  RFH FK+G CSC DYW
Sbjct: 784 ARDAHRFHHFKNGECSCGDYW 804



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 182/384 (47%), Gaps = 15/384 (3%)

Query: 7   LLQKC--SSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYA-LSPLNELAYAHA 63
           LLQ C  + + AV     KQ+  H+   G  +  ++ + + +++ YA    +NE   A  
Sbjct: 34  LLQSCVKAKDLAVG----KQVHEHILRCG-VKPNVY-ITNTLLKLYAHCGSVNE---ARQ 84

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF + +  S   +N ++ G AH      A   +  M +     D  T    L AC+    
Sbjct: 85  LFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAV 144

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L    +IH  V+  G   D  +G  L+ +YAK G +  A++VFD M  RD  SW  L   
Sbjct: 145 LNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 204

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            A+     E++  +  M  E V +P+ +T +  L+ACG L A ++G +IH +I E     
Sbjct: 205 YAESGYGEESLKTYHAMLQERV-RPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHS 263

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           +V V  A+  MY KCG    A EVF+ +  R  ++ WNTM+  F   G    A   F +M
Sbjct: 264 DVRVSTALTKMYMKCGAFKDAREVFECLSYR-DVIAWNTMIRGFVDSGQLEEAHGTFHRM 322

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
              GV PD  +Y   L AC   G +  G  +    A  G+  +++   +++++  +AG +
Sbjct: 323 LEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSM 382

Query: 364 QEACDIVKSVSMGTDMVLWQTLLG 387
           ++A  +   +    D+V W TLLG
Sbjct: 383 KDARQVFDRMPK-RDVVSWTTLLG 405



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 163/327 (49%), Gaps = 9/327 (2%)

Query: 89  PTNAVLWYRQ--MLRGSHRSDALTCSF----ALKACARVLALFETLQIHSHVLRHGFLAD 142
           PT    WY    +L+  HR      S+     L++C +   L    Q+H H+LR G   +
Sbjct: 3   PTGKDGWYAPADVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPN 62

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +  TLL +YA  G +  A+++FD+   + + SWN +I+G A   LA EA +LF  M+ 
Sbjct: 63  VYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQ 122

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           E + +P++ T +  L+AC        G +IH  + E  L  +  V NA+I MYAKCG + 
Sbjct: 123 ERL-EPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVR 181

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VFD +  R   V+W T+  A+A  G G  +L+ +  M +  V+P  ++Y+  L AC
Sbjct: 182 DARRVFDAMASRDE-VSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSAC 240

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
                ++ G ++   +       +++   ++  +  + G  ++A ++ + +S   D++ W
Sbjct: 241 GSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSY-RDVIAW 299

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMG 409
            T++      G +E A     +++E G
Sbjct: 300 NTMIRGFVDSGQLEEAHGTFHRMLEEG 326



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 186/389 (47%), Gaps = 21/389 (5%)

Query: 6   ALLQKCSSNGAVS---HIHIKQLQAHL---TTTGQFQSKLFPVRSKIIEFYALSPLNELA 59
           ++L  CSS   ++    IH++ ++A L   TT G          + +I  YA      + 
Sbjct: 134 SILSACSSPAVLNWGREIHVRVMEAGLANDTTVG----------NALISMYA--KCGSVR 181

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
            A  +F  + +     +  +    A S     ++  Y  ML+   R   +T    L AC 
Sbjct: 182 DARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACG 241

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            + AL +  QIH+H++   + +D  + T L  +Y K G    A++VF+ +  RD+ +WN 
Sbjct: 242 SLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNT 301

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I G        EA   F RM  EGV  P+  T    L+AC   G    G +IH    ++
Sbjct: 302 MIRGFVDSGQLEEAHGTFHRMLEEGV-APDRATYTTVLSACARPGGLARGKEIHARAAKD 360

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            L  +V   NA+I+MY+K G +  A +VFD +  ++ +V+W T++  +A       +   
Sbjct: 361 GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLLGRYADCDQVVESFTT 419

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           F+QM + GVK + ++Y+  L AC++   +  G  +   +   G+  ++    +++ +  +
Sbjct: 420 FKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFK 479

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            G +++A  + + +SM  D+V W TL+G 
Sbjct: 480 CGSVEDAIRVFEGMSM-RDVVTWNTLIGG 507


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/542 (38%), Positives = 320/542 (59%), Gaps = 5/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I+ Y  S   ++  A  LF   +      +NA++ G   S     A+  +  M  
Sbjct: 436 VSTALIDVY--SKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHE 493

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              ++D +T + A KA   ++ L +  QIH+ V++  F  D  + + +LD+Y K GE+ S
Sbjct: 494 RGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKS 553

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+KVF+++   D  +W  +I+G  +     +A+  + +M++ GV +P+E T    + AC 
Sbjct: 554 ARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGV-QPDEYTFATLVKACS 612

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L A ++G +IH  I +     +  V  +++DMYAKCG ++ A+ +F  +  R S+  WN
Sbjct: 613 LLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTR-SVALWN 671

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            M++  A HG+   AL  F +M   GV PD V+++  L AC+H+GL  D  + F+SM   
Sbjct: 672 AMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKT 731

Query: 342 -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            GV+P ++HY  +VD L RAG +QEA  +V S+       +++TLL AC++ GD E  E 
Sbjct: 732 YGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGER 791

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
            + KL  M  ++   +VLLSN+YAA  +W++    R  MK  +VKK PGFS+I++   +H
Sbjct: 792 VAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVH 851

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F   D+SH +   IY K++ +M +IKE GY   T   L DI EE+KE+AL YHSEKLA+
Sbjct: 852 LFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAI 911

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           A+GL+ T  +T+++V KNLR+C DCH+ IK IS V+ REI++RD  RFH F+ G CSC D
Sbjct: 912 AYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGD 971

Query: 581 YW 582
           YW
Sbjct: 972 YW 973



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 157/341 (46%), Gaps = 4/341 (1%)

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
           AYA  LF   +      +N  L     + +   AV  +R M++     D+LT    L   
Sbjct: 248 AYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVV 307

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           A +  L    QIH  V+R G+     +  + +++Y K G +  A+++F +M   D+ SWN
Sbjct: 308 ASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWN 367

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL-GAWKEGDKIHEYIR 237
            +I+G A+  L   ++ LF  +   G+  P++ T+   L AC  L  ++  G ++H    
Sbjct: 368 TVISGCARSGLEECSLRLFIDLLRSGLL-PDQFTITSVLRACSSLEESYCVGRQVHTCAL 426

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  + ++  V  A+ID+Y+K G +++A  +F N +    L +WN M+  F V  +   AL
Sbjct: 427 KAGIVLDSFVSTALIDVYSKGGKMEEAELLFHN-QDGFDLASWNAMMHGFTVSDNYREAL 485

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
            LF  M   G K D +++  A  A      +  G ++   +       ++     ++D+ 
Sbjct: 486 RLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMY 545

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            + G ++ A  +   +    D V W T++  C   G+ E A
Sbjct: 546 LKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEEQA 585



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 79/381 (20%), Positives = 151/381 (39%), Gaps = 46/381 (12%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAV 79
           K+  A + T+G    +   V + +I  YA      L  A  LF  I   S  D   +NA+
Sbjct: 33  KRTHAVIVTSGLNPDRY--VTNNLITMYA--KCGSLFSARKLF-DITPQSDRDLVTYNAI 87

Query: 80  LRGLAHS------SKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH 133
           L   AH+       K   A   +R + +    +   T S   K C    +   +  +  +
Sbjct: 88  LAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGY 147

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
            ++ G   D  +   L+++YAK   I  A+ +FD M VRD+  WN ++    +     E 
Sbjct: 148 AVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEV 207

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW-KEGDKIHEYIREERLDMNVVVCNAVI 252
           + LF      G+ +P+ V+V   L   G    + +E +++  Y  +      + VC+   
Sbjct: 208 LGLFSAFHRSGL-RPDCVSVRTILMGVGKKTVFERELEQVRAYATK------LFVCDDDS 260

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
           D                       +  WN  + ++   G+G  A++ F  M ++ V  D 
Sbjct: 261 D-----------------------VTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDS 297

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
           ++Y+  L        ++ G ++  ++   G    +    S +++  +AG +  A  +   
Sbjct: 298 LTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQ 357

Query: 373 VSMGTDMVLWQTLLGACQLYG 393
           +    D++ W T++  C   G
Sbjct: 358 MK-EVDLISWNTVISGCARSG 377



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 33/209 (15%)

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD-NIKCRKSLVTWNTMVMAF 287
           G + H  I    L+ +  V N +I MYAKCG L  A ++FD   +  + LVT+N ++ A+
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 288 AVHG---DGPRALELFE--QMGRAGV---KPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           A  G   D  +  E F   ++ R  V       +S L  LC    +    + ++ +    
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGY--AV 149

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             G++ ++   G++V++  +  R++EA  +   + +  D+VLW  ++ A           
Sbjct: 150 KIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPV-RDVVLWNVMMKA----------- 197

Query: 400 IASRKLVEMGSNNCGDFVLLSNLYAAYER 428
                 VEMG+   GD VL   L++A+ R
Sbjct: 198 -----YVEMGA---GDEVL--GLFSAFHR 216


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/531 (38%), Positives = 303/531 (57%), Gaps = 54/531 (10%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           R D ++    L ACA + A      +H   +R G   D  +G  L+D+YAK G +  A K
Sbjct: 10  RPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASK 69

Query: 165 VFDEMGVRDIASWNAL-----------------------------------IAGLAQGNL 189
           VFD +  +D+ SWNA+                                   IA  AQ  L
Sbjct: 70  VFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGL 129

Query: 190 ASEAVDLFKRM----------------KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
             E +D+F+ M                K +G+ KPN  T+  AL AC  L A + G +IH
Sbjct: 130 GCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIH 189

Query: 234 EYIREERLDMNVV-VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            YI     D   + V N +IDMYAK G +D A  VFDN+K +K+ V+W +++  + +HG 
Sbjct: 190 AYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLK-QKNFVSWTSLMTGYGMHGR 248

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYG 351
           G  ALE+F++M R G++PD V+ L  L AC+H+G++D G+  FNSM+   GV P  +HY 
Sbjct: 249 GKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYA 308

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +VDLLGRAGRL EA ++++ + M    ++W  LL  C+++ +VE+ E A+++L+E+ S 
Sbjct: 309 CMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSE 368

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           N G + LLSN+YA   RW DV RVR  MKN  ++K PG S+++       F+ +DK+H +
Sbjct: 369 NDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQ 428

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
            ++IYE L  +  +IK  GY   TS  LHD+ +EEK + L  HSEKLA+A+G++ ++   
Sbjct: 429 SKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPGA 488

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            I++ KNLR+C DCH+ I  IS + + EII+RD  RFH FK G+CSC  YW
Sbjct: 489 PIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 137/276 (49%), Gaps = 19/276 (6%)

Query: 79  VLRGLAHSSKPTNAVLWYRQMLR--GSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           V R + H  +  +A+  +  M +  G  + +  T S AL ACAR+ AL    QIH+++LR
Sbjct: 136 VFREMQHG-EANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILR 194

Query: 137 HGFLADAL-LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + F +  L +   L+D+YAK G+I  A+ VFD +  ++  SW +L+ G        EA++
Sbjct: 195 NHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALE 254

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN----AV 251
           +F  M+  G+ +P+ VT+L  L AC H G   +G +    + +E     V+        +
Sbjct: 255 VFDEMRRVGL-QPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKE---FGVIPGQEHYACM 310

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK-- 309
           +D+  + G L++A E+ + ++   S + W  ++    +H +    +EL E   +  ++  
Sbjct: 311 VDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHAN----VELGEHAAKQLLELN 366

Query: 310 -PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
             +D SY        +A    D  R+ + M N G++
Sbjct: 367 SENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIR 402


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/605 (36%), Positives = 351/605 (58%), Gaps = 40/605 (6%)

Query: 14  NGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPST 73
           +G  +   IKQ+ A +   G  QS    V +K+I       +    Y  ++F Q+N P+ 
Sbjct: 54  DGCKNLTQIKQVHARILLNGLDQSCY--VLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNP 111

Query: 74  NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH 133
             +NA++RG     +   +  +Y  M +      + T +   KAC   + +    QIH  
Sbjct: 112 FLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQ 171

Query: 134 -VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA---------- 182
            +L  GF  D  +G +++D+Y K G +   +KVFDEM  RD+ SW  LI+          
Sbjct: 172 TILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMES 231

Query: 183 ---------------------GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
                                G AQ     EA+  F++M+  GV + +E+T++G ++AC 
Sbjct: 232 AGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGV-ETDEITLIGVISACA 290

Query: 222 HLGAWKEGDKIHEYIREERL--DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
            LGA K  D I +   +       +VVV +A+IDMY+KCG +  A+ VF  +K  +++ +
Sbjct: 291 QLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMK-ERNVYS 349

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           +++M++ FA+HG    A++LF++M +  +KP+ V+++  L AC+HAG+V+ G ++F  M 
Sbjct: 350 YSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELME 409

Query: 340 NC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            C G+KP+  HY  +VDLLGRAGRLQEA ++VK++ +     +W  LLGAC+++   ++A
Sbjct: 410 KCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIA 469

Query: 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEV-GG 457
            IA+  L E+     G+++LL+N+YA+  RW+DV  VRK M+ R ++K P FS+IE   G
Sbjct: 470 AIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKG 529

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
           ++H+FF+ D +H +  EI + L++++ +++  GY    S V +D+ +E+K   L  HSEK
Sbjct: 530 MVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEK 589

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LA+AFGLIST   + I++ KNLRIC DCH VI   S++  REIIVRD +RFH F DG CS
Sbjct: 590 LALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICS 649

Query: 578 CKDYW 582
           C ++W
Sbjct: 650 CGNFW 654


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/543 (38%), Positives = 315/543 (58%), Gaps = 38/543 (6%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G  H     +A+  +R+M     + D  T +  + ACA         Q+H+++L
Sbjct: 257 WNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYIL 316

Query: 136 RHGFLAD----ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL----------- 180
           ++    D      +G TL+ +Y K G++  A+K+F EM V+DI +WN L           
Sbjct: 317 KNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRME 376

Query: 181 --------------------IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
                               I+GLAQ     +A+ LF +MK++G ++PN+    GA+ AC
Sbjct: 377 EAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDG-YEPNDYAFAGAITAC 435

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
             LGA + G ++H  I     D  + V NA+I MYA+CG+++ A  +F  +      V+W
Sbjct: 436 SVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDP-VSW 494

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-A 339
           N+M+ A   HG G +A+EL+EQM + G+ PD  ++L  L AC+HAGLV++G R FNSM  
Sbjct: 495 NSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLE 554

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
           N G+ P   HY  ++DL  RAG+  +A +++ S+       +W+ LL  C+ +G++++  
Sbjct: 555 NYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGI 614

Query: 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
            A+ KL ++   + G +VLLSN+YA+  RW+DV R RK M++R VKK P  S+ EV   +
Sbjct: 615 EAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKV 674

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H F   D  H +   IY  L+++  ++K+ GY   T  VLHD+  E KE AL  HSEKLA
Sbjct: 675 HVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLA 734

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           VAFGL+   +  +++VFKNLRIC DCH+ IK +SKV  REI+VRD  RFH FK+G CSC+
Sbjct: 735 VAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCR 794

Query: 580 DYW 582
           +YW
Sbjct: 795 NYW 797



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 132/290 (45%), Gaps = 13/290 (4%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A + F Q+   +   +  ++ GLA +     A+  + QM    +  +    + A+ AC+ 
Sbjct: 378 AKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSV 437

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL    Q+H+ ++  G  +   +G  ++ +YA+ G + +A+ +F  M   D  SWN++
Sbjct: 438 LGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSM 497

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IA L Q     +A++L+++M  EG+  P+  T L  L+AC H G  +EG++    + E  
Sbjct: 498 IAALGQHGHGVKAIELYEQMLKEGIL-PDRRTFLTVLSACSHAGLVEEGNRYFNSMLE-- 554

Query: 241 LDMNVVVCNA------VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              N  +         +ID++ + G    A  V D++        W  ++     HG+  
Sbjct: 555 ---NYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMD 611

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
             +E  E++ +  +   D +Y+         G  +D  R    M + GVK
Sbjct: 612 LGIEAAEKLFKL-IPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVK 660



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 114/233 (48%), Gaps = 18/233 (7%)

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDE--MGVRDIASWNALIAGLAQGNLASEAVDLFK 198
            D +  TTL+  Y+ +G +  A+++F+E  + +RD   +NA+I G +  N    A++LF+
Sbjct: 77  PDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFR 136

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGA-WKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
            M+    F+P++ T    L+A   +    ++  ++H  + +  +++   V NA++ +Y K
Sbjct: 137 AMRWAN-FQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVK 195

Query: 258 CG---------LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           C          L+  A ++FD +  R   + W T++  +  +GD   A E+ + M     
Sbjct: 196 CASSPLVSSSSLMASARKLFDEMPKRNEFI-WTTLITGYVRNGDLTGAREILDTM----T 250

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           +   +++ A +    H GL +D + LF  M   GV+ +   Y SV+      G
Sbjct: 251 EQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGG 303



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 14/129 (10%)

Query: 226 WKEGDKIH-EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC-RKSLVTWNTM 283
           WK  D ++   + +E    +V+    +I  Y+  G L  A E+F+      +  V +N M
Sbjct: 59  WKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAM 118

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL------------CACNHAGLVDDG 331
           +  ++   DG  A+ELF  M  A  +PDD ++ + L            C   H  +V  G
Sbjct: 119 ITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFG 178

Query: 332 VRLFNSMAN 340
           + +F ++ N
Sbjct: 179 IEIFPAVLN 187


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/529 (38%), Positives = 322/529 (60%), Gaps = 8/529 (1%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSD-----ALTCSFA 114
           +A  +F  +       +N+++   A SS    +V  +  +L    + D     ++T + A
Sbjct: 339 FAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATA 398

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
            KAC  ++ L +  QIH+H ++ GF +D  + + +LD+Y K G++V+A  VF+ +   D 
Sbjct: 399 AKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDD 458

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            +W ++I+G        +A+ ++ RM+   V  P+E T    + A   + A ++G ++H 
Sbjct: 459 VAWTSMISGCVDNGNEDQALRIYHRMRQSRVM-PDEYTFATLIKASSCVTALEQGRQLHA 517

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            + +     +  V  +++DMYAKCG ++ A+ +F  +  R ++  WN M++  A HG+  
Sbjct: 518 NVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE 576

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSV 353
            A+ LF+ M   G++PD VS++  L AC+HAGL  +     +SM N  G++P ++HY  +
Sbjct: 577 EAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCL 636

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VD LGRAG +QEA  +++++       + + LLGAC++ GDVE  +  + +L  +   + 
Sbjct: 637 VDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDS 696

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
             +VLLSN+YAA  RWDDV   RK MK ++VKK PGFS+I+V  ++H F   D+SH +  
Sbjct: 697 AAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQAD 756

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
            IY+K++E+M  I+E GY   T  VL D+ +EEKE +L YHSEKLA+A+GLIST  +T+I
Sbjct: 757 IIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTI 816

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +V KNLR+C DCH+ IK ISKV+ REI++RD  RFH F+DG CSC DYW
Sbjct: 817 RVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 168/332 (50%), Gaps = 14/332 (4%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC--ARVLALFETLQIHSH 133
           +N +L+G         A   + +  R   R D  +    L  C  A    L    Q+H  
Sbjct: 252 WNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGI 311

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
            ++ G  +D  +  +L+++Y+K+G    A++VF++M   D+ SWN++I+  AQ +L  E+
Sbjct: 312 AVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEES 371

Query: 194 VDLFKRMKMEGVFKPN-----EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
           V+LF  +  EG+ KP+      +T+  A  ACG L    +G +IH +  +   D ++ V 
Sbjct: 372 VNLFIDLLHEGL-KPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVN 430

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           + ++DMY KCG +  A  VF+ I      V W +M+     +G+  +AL ++ +M ++ V
Sbjct: 431 SGILDMYIKCGDMVNAGIVFNYISAPDD-VAWTSMISGCVDNGNEDQALRIYHRMRQSRV 489

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMA--NCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            PD+ ++   + A +    ++ G +L  ++   +C   P +    S+VD+  + G +++A
Sbjct: 490 MPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDA 547

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             + K +++  ++ LW  +L     +G+ E A
Sbjct: 548 YRLFKKMNV-RNIALWNAMLVGLAQHGNAEEA 578



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 164/358 (45%), Gaps = 15/358 (4%)

Query: 53  SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHS--SKPTNAV--LWYRQMLRGSHRSDA 108
           S    L+ A  +F          +NA+L   A S  S   NA   L   ++LR S  S  
Sbjct: 123 SKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTT 182

Query: 109 -LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD 167
            +T +  LK C     L+    +H + ++ G   D  +   L+++Y+K G +  A+ +FD
Sbjct: 183 RMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFD 242

Query: 168 EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA-- 225
            M  RD+  WN ++ G  Q  L  EA  LF      G+ +P+E +V   L  C   G   
Sbjct: 243 WMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGL-RPDEFSVQLILNGCLWAGTDD 301

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            + G ++H    +  LD +V V N++++MY+K G    A EVF+++K    L++WN+M+ 
Sbjct: 302 LELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK-HLDLISWNSMIS 360

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPD-----DVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           + A       ++ LF  +   G+KPD      ++   A  AC    L+D G ++      
Sbjct: 361 SCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIK 420

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            G   ++     ++D+  + G +  A  +   +S   D V W +++  C   G+ + A
Sbjct: 421 AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYIS-APDDVAWTSMISGCVDNGNEDQA 477



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 133/268 (49%), Gaps = 14/268 (5%)

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA----- 185
           H+ ++  G   D  L   LL +Y+K G + SA++VFD    RD+ +WNA++   A     
Sbjct: 100 HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDS 159

Query: 186 -QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
             GN A E + LF+ ++   +     +T+   L  C + G     + +H Y  +  L+ +
Sbjct: 160 NDGN-AQEGLHLFRLLR-ASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWD 217

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           V V  A++++Y+KCG +  A  +FD ++  + +V WN M+  +   G    A +LF +  
Sbjct: 218 VFVSGALVNIYSKCGRMRDARLLFDWMR-ERDVVLWNMMLKGYVQLGLEKEAFQLFSEFH 276

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDD---GVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           R+G++PD+ S    L  C  AG  DD   G ++       G+  ++    S+V++  + G
Sbjct: 277 RSGLRPDEFSVQLILNGCLWAG-TDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMG 335

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGAC 389
               A ++   +    D++ W +++ +C
Sbjct: 336 CAYFAREVFNDMKH-LDLISWNSMISSC 362


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/524 (37%), Positives = 316/524 (60%), Gaps = 9/524 (1%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F +++      + A++     + KP  A++ +++M         L  S A+ + A  + 
Sbjct: 14  IFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKM---QQEEGLLADSIAVVSVASAVG 70

Query: 124 LFETLQ----IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
               ++    +H +  R   + +  +G ++L ++ K G    A+ VFD M  RD+ SWN+
Sbjct: 71  QLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNS 130

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +++G  Q   A+EA+ LF  M+ +   +P  VT L  ++AC +LG    G K H++I + 
Sbjct: 131 MLSGYTQNGQATEALLLFDEMR-DSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDS 189

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALE 298
           R++++  + NA++DMYAKCG L+KA ++F+ I    ++  +WN ++  + +HG G  ALE
Sbjct: 190 RMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALE 249

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LF +M   GV+P+  ++ + L AC+HAGL+D+G + F  M    V    KH+  VVD+LG
Sbjct: 250 LFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLG 309

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG LQEA D++K +       +W  LL AC+++G++E+ + A+  L+++  N+ G +VL
Sbjct: 310 RAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVL 369

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           +SN+YAA  +W +V ++R+ MKN+ +KK   FS IE G  I  F T+D+ +    E+Y+K
Sbjct: 370 MSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVYKK 429

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           ++ +  ++K  GY    SC LHD+ EE+KE  L YHSEKLAVAFG++       I+V KN
Sbjct: 430 MESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKIDPGMVIRVTKN 489

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH   K IS +Y R+IIVRD  RFH F+ G CSCKDYW
Sbjct: 490 LRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 128/254 (50%), Gaps = 3/254 (1%)

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
           +YAK G  V  +K+FDEM  +D+  W A+I    Q     EA+ LFK+M+ E     + +
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
            V+   +A G LG  K    +H Y   + L   + V N+++ M+ KCG  +KA  VFD +
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFD-M 119

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
              + +++WN+M+  +  +G    AL LF++M  +  +P  V+ L  + AC + G    G
Sbjct: 120 MMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLG 179

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQ 390
            +  + + +  ++ +     +++D+  + G L++A D+   +     +   W  L+    
Sbjct: 180 RKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYG 239

Query: 391 LYGD-VEMAEIASR 403
           ++G   E  E+ SR
Sbjct: 240 MHGHGKEALELFSR 253


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/437 (42%), Positives = 291/437 (66%), Gaps = 3/437 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           T ++  Y++VG +  A+ +FD+M  +D+  W+A+I+G A+ +   EA++LF  M++ G+ 
Sbjct: 18  TAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGI- 76

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           KP++VT+L  ++AC  LG       IH Y+ +  L   + V NA+IDMYAKCG L  A  
Sbjct: 77  KPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARG 136

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ ++ R ++++W +M+ AFA+HGD   AL+ F QM    +KP+ V+++  L AC+HAG
Sbjct: 137 VFEKMQSR-NVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAG 195

Query: 327 LVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LV++G R F SM N   + P  +HYG +VDL GRA  L++A ++V+++ +  ++V+W +L
Sbjct: 196 LVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSL 255

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           + ACQ++G+ E+ E A+++++E+  ++ G  V LSN+YA   RW DVG +R  MK R + 
Sbjct: 256 MAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQRGIS 315

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K  G S IE+   +++F  +DK H +  +IYEKLDE++ ++K  GY   T  VL D+ EE
Sbjct: 316 KERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLVDVEEE 375

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
            K+  + +HSEKLA+ +GL+   + + I++ KNLR+C DCH  IKL+SKVY  EIIVRDR
Sbjct: 376 GKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGMEIIVRDR 435

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH +K G CSC DYW
Sbjct: 436 TRFHHYKAGVCSCNDYW 452



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 132/263 (50%), Gaps = 10/263 (3%)

Query: 34  QFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAV 93
           +  S+   V + +I  Y  S +  +  A  +F Q+       ++A++ G A S KP  A+
Sbjct: 8   KISSRNLVVLTAMISGY--SRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEAL 65

Query: 94  LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153
             + +M     + D +T    + ACAR+  L     IH +V ++G      +   L+D+Y
Sbjct: 66  NLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMY 125

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           AK G + +A+ VF++M  R++ SW ++I   A    AS A+  F +MK E + KPN VT 
Sbjct: 126 AKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENI-KPNGVTF 184

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA----VIDMYAKCGLLDKAFEVFD 269
           +G L AC H G  +EG +    +  E    N+   +     ++D++ +  LL  A E+ +
Sbjct: 185 VGVLYACSHAGLVEEGRRTFASMTNEH---NITPKHEHYGCMVDLFGRANLLRDALELVE 241

Query: 270 NIKCRKSLVTWNTMVMAFAVHGD 292
            +    ++V W +++ A  +HG+
Sbjct: 242 TMPLAPNVVIWGSLMAACQIHGE 264



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 80/155 (51%), Gaps = 2/155 (1%)

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N+VV  A+I  Y++ G ++ A  +FD ++  K LV W+ M+  +A       AL LF +M
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQME-EKDLVCWSAMISGYAESDKPQEALNLFSEM 71

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
              G+KPD V+ L+ + AC   G++D    +   +   G+   +    +++D+  + G L
Sbjct: 72  QVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNL 131

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             A  + + +    +++ W +++ A  ++GD   A
Sbjct: 132 GAARGVFEKMQ-SRNVISWTSMINAFAIHGDASNA 165


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/508 (39%), Positives = 304/508 (59%), Gaps = 4/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++ ++ G   + +P +A+  YR+M     + D +     ++AC     +     +H H+L
Sbjct: 177 WSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLL 236

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           RHG   D +  T+L+D+YAK G +  A +VF  M  R+  SW+A+I+G AQ   + EA+ 
Sbjct: 237 RHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALR 296

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF+ M+  G+ +P+   ++ AL AC ++G  K G  +H +I   R D N ++  A IDMY
Sbjct: 297 LFRNMQASGI-QPDSGALVSALLACSNIGFLKLGRSVHGFI-VRRFDFNCILGTAAIDMY 354

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCG L  A  +F+ I  R  L+ WN M+     HG G  AL LF++M   G++PD  ++
Sbjct: 355 SKCGSLASAQMLFNMISDR-DLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATF 413

Query: 316 LAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            + L A +H+GLV++G   F  M N   + P  KHY  +VDLL R+G ++EA D++ S+ 
Sbjct: 414 ASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMK 473

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
               + +W  LL  C     +E+ E  +  ++E+  ++ G   L+SNLYAA ++WD V +
Sbjct: 474 AEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQ 533

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VRK MK+   KK+PG S IE+ G  H F   D+SH +  EI  K+ ++  ++++ GY   
Sbjct: 534 VRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPR 593

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T  V HD+ EE KE  L YHSEKLA+AFGL++T   T + + KNLR+C DCHD IK ISK
Sbjct: 594 TEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISK 653

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +REI+VRD  RFH FKDG CSC+DYW
Sbjct: 654 IADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 173/334 (51%), Gaps = 21/334 (6%)

Query: 85  HSSK--PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
           HS +  P +A+  +R  L  + R D+ T + AL ACAR+  L     +       G+  D
Sbjct: 84  HSRRGSPASALRVFRA-LPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             + ++LL +YA+ G +  A KVFD M  RD  +W+ ++AG        +A+ +++RM+ 
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           +GV K +EV ++G + AC      + G  +H ++    + M+VV   +++DMYAK GLLD
Sbjct: 203 DGV-KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VF  +   ++ V+W+ M+  FA +G    AL LF  M  +G++PD  + ++AL AC
Sbjct: 262 VACRVF-GLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 323 NHAGLVDDG-------VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           ++ G +  G       VR F+   NC +        + +D+  + G L  A  +   +S 
Sbjct: 321 SNIGFLKLGRSVHGFIVRRFD--FNCILGT------AAIDMYSKCGSLASAQMLFNMIS- 371

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
             D++LW  ++  C  +G  + A    +++ E G
Sbjct: 372 DRDLILWNAMIACCGAHGRGQDALTLFQEMNETG 405



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 12/252 (4%)

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           R LA    L I S    H  +      ++L   YA+ G++ +A+            +   
Sbjct: 25  RTLARLHALLIVSSSATHTLI------SSLAAAYARAGDLAAAESTLTATAASSSIAAWN 78

Query: 180 LIAGL--AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            I      +G+ AS A+ +F+   +    +P+  T   AL+AC  LG  + G+ + +   
Sbjct: 79  AIIAAHSRRGSPAS-ALRVFR--ALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAF 135

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +     +V VC++++ +YA+ G +  A +VFD +  R+  VTW+TMV  F   G    A+
Sbjct: 136 DAGYKDDVFVCSSLLHLYARWGAMGDAVKVFDRMP-RRDRVTWSTMVAGFVSAGQPLDAI 194

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           +++ +M   GVK D+V  +  + AC  A  V  G  +   +   G++ ++    S+VD+ 
Sbjct: 195 QMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMY 254

Query: 358 GRAGRLQEACDI 369
            + G L  AC +
Sbjct: 255 AKNGLLDVACRV 266


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/538 (38%), Positives = 320/538 (59%), Gaps = 32/538 (5%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G   S +   +   +  M+R S  + A+T    L AC +   L   +Q+H  VL
Sbjct: 129 WNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVL 188

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             G L D  +   L+D+YA+ G++ +A  +F+ M +R +ASW ++I+GL +      A D
Sbjct: 189 ESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARD 248

Query: 196 LFKRMKME---------------GVFK---------------PNEVTVLGALAACGHLGA 225
           LF  M                  G F+                +E T++  + AC  LGA
Sbjct: 249 LFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGA 308

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            + G+    Y+    + M+V V NA+IDMY+KCG +++A +VF ++  R    TW  +++
Sbjct: 309 LETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKF-TWTAIIL 367

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVK 344
             AV+G G  A+++F +M RA   PD+V+++  L AC HAGLVD G   F SM     + 
Sbjct: 368 GLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNIS 427

Query: 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRK 404
           P + HYG ++D+LGRAG+L+EA D +  + M  +  +W TLL +C++YG+ E+ E+A+ +
Sbjct: 428 PTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAER 487

Query: 405 LVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFT 464
           L+E+  +N   ++LLSN+YA   RW DV R+R+ +  + +KK PG S IE+ G+IH+F  
Sbjct: 488 LLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVA 547

Query: 465 SDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGL 524
           +D+SH   +EIY KL+ ++  ++  GY    + VL ++ EEEK+  L +HSEKLAV F L
Sbjct: 548 ADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFAL 607

Query: 525 ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +++     I++ KNLR+C DCH+ IKLISK+Y RE+IVRDR RFH F+ G+CSCKDYW
Sbjct: 608 LTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 2/233 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF  +    T  + A++ G     +  +A+  +R M     R+D  T    + ACA+
Sbjct: 246 ARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQ 305

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL        ++ R G   D  +G  L+D+Y+K G I  A  VF +M  RD  +W A+
Sbjct: 306 LGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAI 365

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE- 239
           I GLA      EA+D+F RM +  +  P+EVT +G L AC H G   +G +    + E  
Sbjct: 366 ILGLAVNGRGEEAIDMFYRM-LRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAY 424

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            +   VV    +ID+  + G L +A +  D +  + +   W T++ +  V+G+
Sbjct: 425 NISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGN 477



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 160/367 (43%), Gaps = 56/367 (15%)

Query: 81  RGLAHSSKPTN-----AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ-----I 130
           RG A SS  +      AV  Y +ML G  R DA T    LKA A               I
Sbjct: 19  RGRAASSSVSGHGAEEAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAI 78

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE----MGVRDIASWNALIAGLAQ 186
           H+HV++ G  ++A   ++L+ +YA  G+  +A+ V +      G      WNALI+G  +
Sbjct: 79  HAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNR 138

Query: 187 GNLASEA----VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
                 +    VD+ +   M        VT +  L+ACG       G ++H+ + E  + 
Sbjct: 139 SGRFELSCCSFVDMVRASAM-----ATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVL 193

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE- 301
            +  V NA++DMYA+CG +D A+ +F+ ++ R S+ +W +++      G   RA +LF+ 
Sbjct: 194 PDQRVENALVDMYAECGDMDAAWVLFEGMQMR-SMASWTSVISGLVRSGQVDRARDLFDH 252

Query: 302 -----------------QMGR-------------AGVKPDDVSYLAALCACNHAGLVDDG 331
                            Q+GR               V+ D+ + ++ + AC   G ++ G
Sbjct: 253 MPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETG 312

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
                 M   G+K ++    +++D+  + G ++ A D+ K +    D   W  ++    +
Sbjct: 313 EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMH-NRDKFTWTAIILGLAV 371

Query: 392 YGDVEMA 398
            G  E A
Sbjct: 372 NGRGEEA 378


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/533 (39%), Positives = 323/533 (60%), Gaps = 7/533 (1%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSF 113
           L  L  A  +F  +       +N+++ G     + T A L   Q +RGS  S D LT   
Sbjct: 217 LGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQ-TAAALKMFQGMRGSGVSPDVLTLVS 275

Query: 114 ALKACARVLALFETLQIHSHVLRHGF-LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
              A A+         +H +V+R G+ + D + G  ++D+YAK+  I +A+++FD M V+
Sbjct: 276 LASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQ 335

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D  SWN LI G  Q  LA+EAV+ +  M+     K  + T +  L A  HLGA ++G ++
Sbjct: 336 DSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRM 395

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H    +  L+++V V   +ID+YAKCG L +A  +F+ +  R+S   WN ++    VHG 
Sbjct: 396 HALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMP-RRSTGPWNAIISGLGVHGH 454

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYG 351
           G  AL LF +M + G+KPD V++++ L AC+HAGLVD G   F+ M     + P  KHY 
Sbjct: 455 GAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYA 514

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            + D+LGRAG+L EA + ++++ +  D  +W  LLGAC+++G+VEM ++AS+ L E+   
Sbjct: 515 CMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPE 574

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKS--H 469
           N G +VL+SN+YA   +WD V  VR  ++ ++++K PG+S IEV   ++ F++ +++  H
Sbjct: 575 NVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPH 634

Query: 470 VKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSE 529
            +  EI  +L  ++ KI+  GY +  S VL D+ ++EKE+ L  HSE+LA+AFG+I+T  
Sbjct: 635 PQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIAFGIINTPS 694

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            T + ++KNLR+C DCH+  K IS++  REIIVRD  RFH FKDG CSC D+W
Sbjct: 695 RTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 180/363 (49%), Gaps = 12/363 (3%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L++   SN + + +H   L+  L     F S            +A      ++ A+ +F
Sbjct: 75  SLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSL--------VHAYLRFGRISEAYKVF 126

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            +++      +NA+L GL  +++   AV  + +M+      D +T S  L  C  +    
Sbjct: 127 DEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQV 186

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
             L +H + ++HG   +  +   L+DVY K+G +  A+ VF  M  RD+ +WN++I+G  
Sbjct: 187 LALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCE 246

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM-N 244
           Q    + A+ +F+ M+  GV  P+ +T++   +A    G  +    +H Y+     D+ +
Sbjct: 247 QRGQTAAALKMFQGMRGSGV-SPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDD 305

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           ++  NA++DMYAK   ++ A  +FD++  + S V+WNT++  +  +G    A+E +  M 
Sbjct: 306 IIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDS-VSWNTLITGYMQNGLANEAVERYGHMQ 364

Query: 305 R-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
           +  G+K    ++++ L A +H G +  G+R+       G+  ++     ++DL  + G+L
Sbjct: 365 KHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKL 424

Query: 364 QEA 366
            EA
Sbjct: 425 AEA 427


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/542 (36%), Positives = 318/542 (58%), Gaps = 5/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V +  ++ Y  S + ++  A  +F ++   +   +NA++ G   +     +   + +++R
Sbjct: 268 VLTSFVDMY--SKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVR 325

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
            S   D  T    L+ C++  +L     +H   +R  F ++ +L T ++D+Y+K G +  
Sbjct: 326 SSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQ 384

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A  VF+ M  R++ +W A++ GLAQ   A +A+ LF +M+ EG+   N VT +  + +C 
Sbjct: 385 ATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGI-AANSVTFVSLVHSCA 443

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
           HLG+ K G  IH ++       ++V   A++DMYAKCG ++ A  +F +    K +V WN
Sbjct: 444 HLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWN 503

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-N 340
           +M+  + +HG G +A+ ++ +M   G+KP+  ++L+ L AC+H+ LV+ G+ LFNSM  +
Sbjct: 504 SMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERD 563

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             ++P  KHY  +VDLL RAGR +EA  +++ +       + + LL  C+ + ++ +   
Sbjct: 564 HNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQ 623

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
            S KL+ + + N G +++LSN+YA   RWD V  +R  M+NR +KK PG+S +E G  +H
Sbjct: 624 TSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVH 683

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            FF  D SH  W EIY  L+ +   ++  GY   TSCVL D+ EE K   L  HSE+LA+
Sbjct: 684 TFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAI 743

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AFGL++T   + I++ KNLR+C DCH V K ISK+  REIIVRD  RFH F +G CSC D
Sbjct: 744 AFGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGD 803

Query: 581 YW 582
           YW
Sbjct: 804 YW 805



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 190/400 (47%), Gaps = 20/400 (5%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTT----TGQFQSKLFPVRSKIIEFYALSPLNEL 58
           N  +LL++ S N     I +K   A + T    T QF      V +K+++ Y  S L  L
Sbjct: 33  NFLSLLRESSKN----LIWVKSTHAQIITNSLSTDQF------VATKLVKAY--SDLRSL 80

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
             A  +F Q   P     NA+L G   S +    +  +  M   +   D+ +C+FALKAC
Sbjct: 81  EAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKAC 140

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           A  L     ++I S  +  G   +  +G++++    K G+I  A++VFD M  +D+  WN
Sbjct: 141 ASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWN 200

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ++I G  Q      A  LF  M   G+ KP+ +T+   + ACG +G  K G  +H Y+  
Sbjct: 201 SIIGGYVQAGCFDVAFQLFFEMHGSGI-KPSPITMTSLIQACGGIGNLKLGKCMHGYVLG 259

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L  +++V  + +DMY+K G ++ A  VF  +  R +LV+WN M+     +G    + +
Sbjct: 260 LGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTR-NLVSWNAMISGCVRNGLVGESFD 318

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LF ++ R+    D  + ++ L  C+    +  G ++ +  A    + N+    ++VDL  
Sbjct: 319 LFHRLVRSSGGFDLTTIVSLLQGCSQTASLATG-KILHGCAIRSFESNLILSTAIVDLYS 377

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           + G L++A  +   +    +++ W  +L      G  E A
Sbjct: 378 KCGSLKQATFVFNRMK-DRNVITWTAMLVGLAQNGHAEDA 416


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/557 (38%), Positives = 318/557 (57%), Gaps = 36/557 (6%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACA 119
           A   F Q+       +NA++ G         A+  + +ML   S + D  T + AL ACA
Sbjct: 230 AQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACA 289

Query: 120 RVLALFETLQIHSHVLRHGF-----LADALLG---------------------------- 146
            +  L    QIH+H++R  F     + +AL+                             
Sbjct: 290 NLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAF 349

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           T LLD Y K+G+I  A+++FD + VRD+ +W A+I G  Q     +A++LF+ M  EG  
Sbjct: 350 TALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGP- 408

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           KPN  T+   L+    L +   G +IH          +V V NA+I MYAK G ++ A  
Sbjct: 409 KPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARW 468

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ I  ++  +TW +M++A A HG G  AL LFE+M   G+KPD ++Y+  L AC H G
Sbjct: 469 VFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVG 528

Query: 327 LVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LV+ G   +N M N   + P   HY  ++DL GRAG LQEA   ++++ +  D++ W +L
Sbjct: 529 LVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSL 588

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           L +C+++ +VE+AE+A+ +L+ +   N G +  L+N+Y+A  +W++   +RK+MK++ VK
Sbjct: 589 LASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVK 648

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K  GFS++++   +H F   D  H +   IYE + +I  +IK+ G+   T  VLHD+ EE
Sbjct: 649 KDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEE 708

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
            KE  L +HSEKLA+AFGLI T E T++++ KNLR+C DCH  IK ISK+  REIIVRD 
Sbjct: 709 LKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDA 768

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH FK+G CSC+DYW
Sbjct: 769 TRFHHFKNGLCSCRDYW 785



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 186/416 (44%), Gaps = 65/416 (15%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  AH +F ++  P +  + A++ G     +  NA+  +R+M+         T +  L +
Sbjct: 95  LEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLAS 154

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV------ 171
           CA V  L    ++HS V++HG  +   +  +LL++YAK G+ V+AK VFD M +      
Sbjct: 155 CAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSW 214

Query: 172 -------------------------RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
                                    RD+ SWNA+I+G  Q     EA+D+F +M M+   
Sbjct: 215 NTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSS 274

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG------- 259
           KP++ T+  AL+AC +L   K G +IH +I     D    V NA+I MY+K G       
Sbjct: 275 KPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQK 334

Query: 260 -----------------LLD---------KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
                            LLD          A  +FD+++ R  +V W  M++ +  +G  
Sbjct: 335 IIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVR-DVVAWTAMIVGYVQNGFN 393

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             A+ELF  M + G KP++ +    L   +    +D G ++  S    G   ++    ++
Sbjct: 394 QDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNAL 453

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           + +  ++G + +A  +   +    D + W +++ A   +G  E A     +++E G
Sbjct: 454 ITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENG 509



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 160/372 (43%), Gaps = 43/372 (11%)

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
           F    IH+ +++ G      L   L++ YAK G I  A +VFDEM V+ + SWN +++G 
Sbjct: 30  FTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGY 89

Query: 185 AQGNLASEAVDLFKRMKME----------------------GVFK--------PNEVTVL 214
           A+G    EA  +F+ M                         G+F+        P + T+ 
Sbjct: 90  AKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLT 149

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             LA+C  +     G K+H ++ +  L   + V N++++MYAK G    A  VFD +K  
Sbjct: 150 NVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKL- 208

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           KS  +WNTM+ +    G    A   FEQM    ++ D VS+ A +   N  G   + + +
Sbjct: 209 KSTSSWNTMISSHMQSGLVDLAQVQFEQM----IERDVVSWNAMISGYNQHGFDREALDI 264

Query: 335 FNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDI---VKSVSMGTDMVLWQTLLGACQ 390
           F+ M  +   KP+     S +        L+    I   +      T   +   L+    
Sbjct: 265 FSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYS 324

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
             G VE+A+    K++E    +  D +  + L   Y +  D+   R+   +  V+ V  +
Sbjct: 325 KSGGVEIAQ----KIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAW 380

Query: 451 SYIEVGGVIHKF 462
           + + VG V + F
Sbjct: 381 TAMIVGYVQNGF 392



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 147/306 (48%), Gaps = 10/306 (3%)

Query: 46  IIEFYAL----SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           +I F AL      L ++  A  +F  +       + A++ G   +    +A+  +R M++
Sbjct: 346 VIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIK 405

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              + +  T +  L   + + +L    QIH+   R G  +   +   L+ +YAK G I  
Sbjct: 406 EGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSIND 465

Query: 162 AKKVFDEMG-VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           A+ VF+ +   RD  +W ++I  LAQ  L  EA+ LF+RM   G+ KP+ +T +G L+AC
Sbjct: 466 ARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGI-KPDHITYVGVLSAC 524

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNA-VIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
            H+G  ++G   +  ++     +      A +ID++ + GLL +A    +N+     ++ 
Sbjct: 525 THVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIA 584

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA-GLVDDGVRLFNSM 338
           W +++ +  VH +   A    E++    ++P++    +AL     A G  ++   +  SM
Sbjct: 585 WGSLLASCKVHKNVELAEVAAERL--LLIEPENSGAYSALANVYSACGQWENAANIRKSM 642

Query: 339 ANCGVK 344
            + GVK
Sbjct: 643 KDKGVK 648


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/533 (39%), Positives = 330/533 (61%), Gaps = 18/533 (3%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSS-KPTNAVLWYRQMLRGSHR---SDALTCSFALKACA 119
           + R I+ P++  +N +++  + S+     A+L Y+ ++         D  T  F LKACA
Sbjct: 37  ILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACA 96

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM-GVRDIASWN 178
            + +LFE  Q+H+HVL+ GF  D  +  +L+  YA  G + +A+KVFD M   R++ SWN
Sbjct: 97  YLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWN 156

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
            +I   A+  +    + L    +M  V++P+  T+   + ACG LG+   G  +H ++ +
Sbjct: 157 VMIDSYAK--VGDYDIVLIMFCEMMKVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLK 214

Query: 239 ERLDMNVV----VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            + D NVV    V   ++DMY KCG L+ A +VF+ +  R  + +WN++++ FAVHG   
Sbjct: 215 -KCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYR-DVSSWNSIILGFAVHGKAK 272

Query: 295 RALELFEQMGRA-GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGS 352
            AL+ F +M +   + P+ ++++  L ACNH+G+VD+G+  F  M     V+P++ HYG 
Sbjct: 273 AALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGC 332

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC-QLYGDVEMAEIASRKLVEMGSN 411
           +VDL  RAG +QEA ++V  + +  D V+W++LL AC + +  VE++E  ++++ E   +
Sbjct: 333 LVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHASVELSEEMAKQIFESNGS 392

Query: 412 NCGD-FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
            CG  +VLLS +YA+  RW+DVG +RK M ++ V K PG S IE+ G  H+FF  D +H 
Sbjct: 393 VCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPGCSLIEINGAAHEFFAGDTNHP 452

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTS-CVLHDIGEEEKENALCYHSEKLAVAFGLISTSE 529
           + ++IY+ ++EI  K++  GY    S   L D   E K+N +  HSE+LA+AFGL+++  
Sbjct: 453 QSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEINEGKQNTMRLHSERLAIAFGLLNSKP 512

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +  I+VFKNLR+C DCH V KLIS++YN EIIVRDRVRFH FKDG+CSC DYW
Sbjct: 513 SMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRDRVRFHHFKDGSCSCMDYW 565


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/483 (40%), Positives = 305/483 (63%), Gaps = 3/483 (0%)

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
           +   +SD +T + A KAC  ++ L +  QIH+H ++ GF +D  + + +LD+Y K G++V
Sbjct: 23  KSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMV 82

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           +A  VF+ +   D  +W ++I+G        +A+ ++ RM+   V  P+E T    + A 
Sbjct: 83  NAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVM-PDEYTFATLIKAS 141

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
             + A ++G ++H  + +     +  V  +++DMYAKCG ++ A+ +F  +  R ++  W
Sbjct: 142 SCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVR-NIALW 200

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           N M++  A HG+   A+ LF+ M   G++PD VS++  L AC+HAGL  +     +SM N
Sbjct: 201 NAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPN 260

Query: 341 -CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             G++P ++HY  +VD LGRAG +QEA  +++++       + + LLGAC++ GDVE  +
Sbjct: 261 DYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXGK 320

Query: 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
             + +L  +   +   +VLLSN+YAA  RWDDV   RK MK ++VKK PGFS+I+V  ++
Sbjct: 321 RVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNML 380

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H F   D+SH +   IY+K++E+M  I+E GY   T  VL D+ +EEKE +L YHSEKLA
Sbjct: 381 HLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLA 440

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +A+GLIST  +T+I+V KNLR+C DCH+ IK ISKV+ REI++RD  RFH F+DG CSC 
Sbjct: 441 IAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCG 500

Query: 580 DYW 582
           DYW
Sbjct: 501 DYW 503



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 146/271 (53%), Gaps = 6/271 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ AH    G F S L  V S I++ Y      ++  A  +F  I+AP    + +++ G
Sbjct: 50  KQIHAHAIKAG-FDSDLH-VNSGILDMYI--KCGDMVNAGIVFNYISAPDDVAWTSMISG 105

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              +     A+  Y +M +     D  T +  +KA + V AL +  Q+H++V++   ++D
Sbjct: 106 CVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSD 165

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +GT+L+D+YAK G I  A ++F +M VR+IA WNA++ GLAQ   A EAV+LFK MK 
Sbjct: 166 PFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKS 225

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEG-DKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            G+ +P+ V+ +G L+AC H G   E  + +H    +  ++  +   + ++D   + GL+
Sbjct: 226 HGI-EPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLV 284

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            +A +V + +  + S      ++ A  + GD
Sbjct: 285 QEADKVIETMPFKASASINRALLGACRIQGD 315



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 1/116 (0%)

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           M+  + +  DG +ALELF  + ++G K D ++   A  AC    L+D G ++       G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              ++     ++D+  + G +  A  +   +S   D V W +++  C   G+ + A
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYIS-APDDVAWTSMISGCVDNGNEDQA 115


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/508 (39%), Positives = 303/508 (59%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++ G A   +   A+   R+M R     D  T S  L   A    +   + +H + +
Sbjct: 138 WNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAI 197

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           ++GF  D  +G++L+D+YA   ++  + KVFD     D   WN+++AG AQ     EA+ 
Sbjct: 198 KNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALG 257

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +F+RM   GV +P  VT    + A G+L   + G ++H Y+   R + N+ + +++IDMY
Sbjct: 258 IFRRMLQAGV-RPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMY 316

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            KCG +D A  VF+ I+    +V+W  M+M +A+HG    A  LFE+M    VKP+ +++
Sbjct: 317 CKCGNVDIARRVFNGIQ-SPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITF 375

Query: 316 LAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           LA L AC+HAGLVD+G + FNSM+N  G  P+++H  ++ D LGRAG L EA + +  + 
Sbjct: 376 LAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMK 435

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +     +W TLL AC+++ +  +AE  ++K+ E+   + G  V+LSN+Y+A  RW++  +
Sbjct: 436 IKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQ 495

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +RK+M+ + +KK P  S+IEV   +H F   DKSH  +  I + L+    ++   GY   
Sbjct: 496 LRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGYVPN 555

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
              VL DI EE+K   LC HSEKLA+ FG+IST   T+I+V KNLR+C DCH   K ISK
Sbjct: 556 MEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHIATKFISK 615

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +  REI+VRD  RFHRFKDG CSC D+W
Sbjct: 616 IVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 158/338 (46%), Gaps = 38/338 (11%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV---------------GE 158
           ALK+CA +        +H+  +R G  AD      LL++  K+               G 
Sbjct: 55  ALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGG 114

Query: 159 IVSA-----KKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV-- 211
           + SA     +KVFDEM  RD  SWN LI G A+     EA+ + + M  +G F P+    
Sbjct: 115 LESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDG-FMPDTFTL 173

Query: 212 -TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
            TVL   A C  +   K G  +H Y  +   D +V V +++IDMYA C  +D + +VFD+
Sbjct: 174 STVLPIFAECADI---KRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDS 230

Query: 271 IK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
              C    V WN+M+  +A +G    AL +F +M +AGV+P  V++ + + A  +  L+ 
Sbjct: 231 FSDC--DAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLR 288

Query: 330 DGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG---TDMVLWQTLL 386
            G +L   +       N+    S++D+  + G +    DI + V  G    D+V W  ++
Sbjct: 289 LGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNV----DIARRVFNGIQSPDIVSWTAMI 344

Query: 387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
               L+G    A +   ++ E+G+        L+ L A
Sbjct: 345 MGYALHGPTTEAFVLFERM-ELGNVKPNHITFLAVLTA 381



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 137/270 (50%), Gaps = 5/270 (1%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F + +F V S +I+ YA     ++ Y+  +F   +      +N++L G A +     A+ 
Sbjct: 201 FDNDVF-VGSSLIDMYA--NCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALG 257

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
            +R+ML+   R   +T S  + A   +  L    Q+H++++R  F  +  + ++L+D+Y 
Sbjct: 258 IFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYC 317

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G +  A++VF+ +   DI SW A+I G A     +EA  LF+RM++ G  KPN +T L
Sbjct: 318 KCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMEL-GNVKPNHITFL 376

Query: 215 GALAACGHLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
             L AC H G    G K    +  +     ++  C A+ D   + G LD+A+     +K 
Sbjct: 377 AVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKI 436

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           + +   W+T++ A  VH +   A E+ +++
Sbjct: 437 KPTSSVWSTLLRACRVHKNTVLAEEVAKKI 466


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/548 (38%), Positives = 316/548 (57%), Gaps = 5/548 (0%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F S +F V++ ++  YA      +  A  +F  +   +   + +++ G A + K   A+ 
Sbjct: 185 FGSDVF-VQNGLVALYA--KCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALR 241

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
            + QM     + D +     L+A   V  L +   IH  V++ G   +  L  +L   YA
Sbjct: 242 MFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYA 301

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G +  AK  FD+M   ++  WNA+I+G A+   A EAV+LF  M    + KP+ VTV 
Sbjct: 302 KCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNI-KPDSVTVR 360

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
            A+ A   +G+ +    + +Y+ +     ++ V  ++IDMYAKCG ++ A  VFD     
Sbjct: 361 SAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDR-NSD 419

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           K +V W+ M+M + +HG G  A+ L+  M +AGV P+DV+++  L ACNH+GLV +G  L
Sbjct: 420 KDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWEL 479

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           F+ M +  + P  +HY  VVDLLGRAG L EAC  +  + +   + +W  LL AC++Y  
Sbjct: 480 FHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRC 539

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           V + E A+ KL  +   N G +V LSNLYA+   WD V  VR  M+ + + K  G+S IE
Sbjct: 540 VTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIE 599

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYH 514
           + G +  F   DKSH   +EI+++L  +  ++KE G+   T  VLHD+  EEKE  L +H
Sbjct: 600 INGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFH 659

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SE++AVA+GLIST+  T++++ KNLR C +CH  IKLISK+  REIIVRD  RFH FKDG
Sbjct: 660 SERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDG 719

Query: 575 ACSCKDYW 582
            CSC DYW
Sbjct: 720 LCSCGDYW 727



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 186/373 (49%), Gaps = 7/373 (1%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           H+ Q+   L  +G  Q   F + +K++     S L ++ YA  LF +   P    +NA++
Sbjct: 71  HLDQIHNRLVISG-LQHNGF-LMTKLVN--GSSNLGQICYARKLFDEFCYPDVFMWNAII 126

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           R  + ++   + V  YR M       D  T  + LKAC  +L    +  IH  ++++GF 
Sbjct: 127 RSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFG 186

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
           +D  +   L+ +YAK G I  AK VFD +  R I SW ++I+G AQ   A EA+ +F +M
Sbjct: 187 SDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQM 246

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           +  GV KP+ + ++  L A   +   ++G  IH ++ +  L+    +  ++   YAKCGL
Sbjct: 247 RNNGV-KPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGL 305

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +  A   FD +K   +++ WN M+  +A +G    A+ LF  M    +KPD V+  +A+ 
Sbjct: 306 VTVAKSFFDQMK-TTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVL 364

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           A    G ++    + + ++      ++    S++D+  + G ++ A  +    S   D+V
Sbjct: 365 ASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNS-DKDVV 423

Query: 381 LWQTLLGACQLYG 393
           +W  ++    L+G
Sbjct: 424 MWSAMIMGYGLHG 436


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/614 (36%), Positives = 345/614 (56%), Gaps = 45/614 (7%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL  C++  A++    +++ +H++  G  ++ +  V + +I  Y     N +  A   F
Sbjct: 285 SLLNSCNTPEALNRG--RRIHSHISERG-LETDVV-VANALITMYC--KCNCIQDARETF 338

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVL-----WYRQMLRGSHRSDALTCSFALKACAR 120
            +++      ++A++ G A S       L        +M R     + +T    LKAC+ 
Sbjct: 339 DRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSV 398

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI--------------------- 159
             AL +  QIH+ + + GF +D  L T + ++YAK G I                     
Sbjct: 399 HGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASL 458

Query: 160 ----------VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN 209
                      SA+KVF EM  R++ SWN +IAG AQ    ++  +L   MK+EG F+P+
Sbjct: 459 LTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEG-FQPD 517

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
            VT++  L ACG L A + G  +H    +  L+ + VV  ++I MY+KCG + +A  VFD
Sbjct: 518 RVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFD 577

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
            I  R + V WN M+  +  HG GP A++LF++M +  V P+++++ A + AC  AGLV 
Sbjct: 578 KISNRDT-VAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQ 636

Query: 330 DGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +G  +F  M  +  +KP  +HYG +VDLLGRAGRLQEA + ++ +    D+ +W  LLGA
Sbjct: 637 EGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGA 696

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448
           C+ + +V++AE A+  ++ +  +N   +V LSN+YA   RWDD  +VRK M ++ +KK  
Sbjct: 697 CKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDR 756

Query: 449 GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKE 508
           G S IE+ G IH F   D +H +   I+ +L+ +  ++KE GY      VLHD+ E +KE
Sbjct: 757 GESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKE 816

Query: 509 NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
            ALC+HSEKLA+A+GL+ T   T I++ KNLR+C DCH   K ISK+  REI+ RD  RF
Sbjct: 817 RALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRF 876

Query: 569 HRFKDGACSCKDYW 582
           H FK+G CSC D+W
Sbjct: 877 HYFKNGTCSCGDFW 890



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 206/412 (50%), Gaps = 19/412 (4%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + +I FY  S   ++A    +FR++       +++++   A ++ P  A   + +M   +
Sbjct: 117 NSLINFY--SKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
              + +T    LKAC     L +  +IH+ V   G   D  + T L+ +Y+K GEI  A 
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLAC 234

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           ++F +M  R++ SW A+I   AQ    +EA +L+++M   G+  PN VT +  L +C   
Sbjct: 235 EIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGI-SPNAVTFVSLLNSCNTP 293

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
            A   G +IH +I E  L+ +VVV NA+I MY KC  +  A E FD +  ++ +++W+ M
Sbjct: 294 EALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMS-KRDVISWSAM 352

Query: 284 VMAFAVHGDGPR-----ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +  +A  G   +       +L E+M R GV P+ V++++ L AC+  G ++ G ++   +
Sbjct: 353 IAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEI 412

Query: 339 ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           +  G + +     ++ ++  + G + EA  +   +    ++V W +LL      GD+  A
Sbjct: 413 SKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLLTMYIKCGDLTSA 471

Query: 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
           E   +   EM + N   + L   + A Y +  D+ +V + + +    KV GF
Sbjct: 472 E---KVFSEMSTRNVVSWNL---MIAGYAQSGDIAKVFELLSS---MKVEGF 514



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 182/387 (47%), Gaps = 39/387 (10%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  Y  S   E++ A  +F+++   +   + A+++  A   K   A   Y +ML+
Sbjct: 216 VATALITMY--SKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQ 273

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                +A+T    L +C    AL    +IHSH+   G   D ++   L+ +Y K   I  
Sbjct: 274 AGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQD 333

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQ-GNLASEAVD----LFKRMKMEGVFKPNEVTVLGA 216
           A++ FD M  RD+ SW+A+IAG AQ G    E++D    L +RM+ EGVF PN+VT +  
Sbjct: 334 ARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVF-PNKVTFMSI 392

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN------ 270
           L AC   GA ++G +IH  I +   + +  +  A+ +MYAKCG + +A +VF        
Sbjct: 393 LKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNV 452

Query: 271 ----------IKC--------------RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
                     IKC               +++V+WN M+  +A  GD  +  EL   M   
Sbjct: 453 VAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVE 512

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           G +PD V+ ++ L AC     ++ G  +       G++ +     S++ +  + G + EA
Sbjct: 513 GFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEA 572

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYG 393
             +   +S   D V W  +L     +G
Sbjct: 573 RTVFDKIS-NRDTVAWNAMLAGYGQHG 598



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 155/274 (56%), Gaps = 3/274 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           ++ CA++    +   +H  +   G   D  LG +L++ Y+K G++ S ++VF  M +RD+
Sbjct: 85  IEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDV 144

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            +W+++IA  A  N  ++A D F+RMK +   +PN +T L  L AC +    ++  +IH 
Sbjct: 145 VTWSSMIAAYAGNNHPAKAFDTFERMK-DANIEPNRITFLSILKACNNYSMLEKAREIHT 203

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            ++   ++ +V V  A+I MY+KCG +  A E+F  +K R ++V+W  ++ A A H    
Sbjct: 204 VVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKER-NVVSWTAIIQANAQHRKLN 262

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            A EL+E+M +AG+ P+ V++++ L +CN    ++ G R+ + ++  G++ ++    +++
Sbjct: 263 EAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALI 322

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            +  +   +Q+A +    +S   D++ W  ++  
Sbjct: 323 TMYCKCNCIQDARETFDRMS-KRDVISWSAMIAG 355


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/508 (38%), Positives = 309/508 (60%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA L GL         +  +  ML      +  T    L +C+ +  +    Q+H+H++
Sbjct: 484 WNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHII 543

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           ++    +  + T L+D+YAK   +  A   F+ + VRD+ +W  +I   AQ N   +A++
Sbjct: 544 KNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALN 603

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
            F++M+ EGV KPNE T+ G L+ C  L + + G ++H  + +     ++ V +A++DMY
Sbjct: 604 YFRQMQQEGV-KPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMY 662

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG +++A  +F+ +  R+  + WNT++  +A +G G +AL  F  M   G+ PD V++
Sbjct: 663 AKCGCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTF 721

Query: 316 LAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
              L AC+H GLV++G   FNSM  + G+ P + H   +VD+LGR G+  E  D ++ + 
Sbjct: 722 TGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQ 781

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +  + ++W+T+LGA +++ ++ + E A+ KL E+       ++LLSN++A   RWDDV R
Sbjct: 782 LSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKR 841

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VR  M ++ VKK PG S++E  G +H F + D SH + +EI+ KLDE+  ++    Y   
Sbjct: 842 VRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPK 901

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T  VLH++GE EK+  L +HSE+LA+ F LISTS    I++FKNLRICRDCHDV+K IS 
Sbjct: 902 TEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISS 961

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + N+EI+VRD  RFH FK+GACSC D+W
Sbjct: 962 ITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 6/337 (1%)

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
           AYA  +  ++       + A+++GL       +++  +++M       +  T +  LKAC
Sbjct: 164 AYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKAC 223

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           +  +AL    Q+H+   + G L D  +G+ L+D+YAK GEI  A K+F  M  ++  +WN
Sbjct: 224 SLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWN 283

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
            L+ G AQ    +  + LF  M ME   K NE T+   L  C +    K+G  IH  I +
Sbjct: 284 VLLNGYAQRGDVTGVLKLFCSM-MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIK 342

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
              + N  +   ++DMY+KCGL   A  VF  IK +  +V W+ ++      G    +++
Sbjct: 343 CGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALITCLDQQGQSEESIK 401

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LF  M      P+  +  + L A  + G +  G  +   +   G + ++    ++V +  
Sbjct: 402 LFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYM 461

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGA---CQLY 392
           + G + +   + +S+ +  D++ W   L     C +Y
Sbjct: 462 KNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCGMY 497



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 156/314 (49%), Gaps = 4/314 (1%)

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
           S  L+ CA   +L     IH  +++     D+ L  +L++VYAK      A+ V  +M  
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           RD+ SW ALI GL     A++++ LF+ M+ EG+  PNE T+   L AC    A   G +
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIM-PNEFTLATGLKACSLCMALDLGKQ 234

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +H    +  L +++ V +A++D+YAKCG ++ A ++F  +   ++ VTWN ++  +A  G
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLLNGYAQRG 293

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
           D    L+LF  M    VK ++ +    L  C ++  +  G  + + +  CG + N     
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGC 353

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +VD+  + G   +A  + K++    D+V+W  L+      G  E + I    L+ +G  
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALITCLDQQGQSEES-IKLFHLMRLGDT 411

Query: 412 NCGDFVLLSNLYAA 425
               + + S L AA
Sbjct: 412 LPNQYTICSLLSAA 425



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 139/284 (48%), Gaps = 8/284 (2%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTND--FNAVLRGLAHSSKPTNAVLWYRQM 99
           V S +++ YA     E+  A  +F  I  P  ND  +N +L G A     T  +  +  M
Sbjct: 250 VGSALVDLYA--KCGEIELASKMF--IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSM 305

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
           +    + +  T +  LK CA    L +   IHS +++ G+  +  +G  L+D+Y+K G  
Sbjct: 306 MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLA 365

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
           + A  VF  +   DI  W+ALI  L Q   + E++ LF  M++ G   PN+ T+   L+A
Sbjct: 366 IDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL-GDTLPNQYTICSLLSA 424

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
             + G  + G  IH  + +   + +V V NA++ MY K G +    ++++++  R  L++
Sbjct: 425 ATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDR-DLIS 483

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           WN  +      G   R L +F  M   G  P+  ++++ L +C+
Sbjct: 484 WNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 164/328 (50%), Gaps = 17/328 (5%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +Q+ AH+    Q     F V + +I+ YA      L  A   F +++      +  ++  
Sbjct: 536 RQVHAHIIKN-QLDDNNF-VCTALIDMYA--KCMYLEDADVAFNRLSVRDLFTWTVIITN 591

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A +++   A+ ++RQM +   + +  T +  L  C+ + +L    Q+HS V + G ++D
Sbjct: 592 YAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSD 651

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G+ L+D+YAK G +  A+ +F+ +  RD  +WN +I G AQ    ++A+  F+ M  
Sbjct: 652 MFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLD 711

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEG-DKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           EG+  P+ VT  G L+AC H G  +EG +  +   R+  +   V  C  ++D+  + G  
Sbjct: 712 EGI-SPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKF 770

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD---GPRAL-ELFEQMGRAGVKP-DDVSYL 316
           D+  +    ++  ++ + W T++ A  +H +   G +A  +LFE      ++P ++ SY+
Sbjct: 771 DELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFE------LQPEEESSYI 824

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVK 344
                    G  DD  R+ + M++ GVK
Sbjct: 825 LLSNIFATEGRWDDVKRVRSLMSSKGVK 852


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 347/577 (60%), Gaps = 14/577 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           L++ C ++GAV     K++  H+ + G +  K F + + +I  Y     N L  A  LF 
Sbjct: 291 LIKCCLAHGAVREG--KRVHRHIFSNG-YHPKTF-LTNILINMYV--KFNLLEEAQVLFD 344

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           ++   +   +  ++   +++     A+     M R     +  T S  L+AC R   L++
Sbjct: 345 KMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACER---LYD 401

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             Q+HS +++ G  +D  + + L+DVY+K+GE++ A KVF EM   D   WN++IA  AQ
Sbjct: 402 LKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQ 461

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
            +   EA+ L+K M+  G F  ++ T+   L AC  L   + G + H ++   + D +++
Sbjct: 462 HSDGDEALHLYKSMRRVG-FPADQSTLTSVLRACTSLSLLELGRQAHVHVL--KFDQDLI 518

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           + NA++DMY KCG L+ A  +F+ +  +K +++W+TM+   A +G    AL LFE M   
Sbjct: 519 LNNALLDMYCKCGSLEDAKFIFNRM-AKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQ 577

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQE 365
           G KP+ ++ L  L AC+HAGLV++G   F SM N  G+ P  +HYG ++DLLGRA +L +
Sbjct: 578 GPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDD 637

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
              ++  ++   D+V W+TLL AC+   +V++A  A+++++++   + G +VLLSN+YA 
Sbjct: 638 MVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAI 697

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
            +RW+DV  VR+ MK R ++K PG S+IEV   IH F   DKSH +  EI  +L++ + +
Sbjct: 698 SKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICR 757

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           +   GY   T+ VL D+  E++E++L YHSEKLA+ FG++S  +  +I+++KNL+IC DC
Sbjct: 758 LAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDC 817

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H   KLI+++  R I++RD +R+H F+DG CSC DYW
Sbjct: 818 HKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 145/283 (51%), Gaps = 8/283 (2%)

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
           +D++T S  +K C    A+ E  ++H H+  +G+     L   L+++Y K   +  A+ +
Sbjct: 283 ADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVL 342

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FD+M  R++ SW  +I+  +   L   A+ L   M  +GV  PN  T    L AC  L  
Sbjct: 343 FDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVM-PNMFTFSSVLRACERLYD 401

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            K+   +H +I +  L+ +V V +A+ID+Y+K G L +A +VF  +    S+V WN+++ 
Sbjct: 402 LKQ---LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVV-WNSIIA 457

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
           AFA H DG  AL L++ M R G   D  +  + L AC    L++ G +    +       
Sbjct: 458 AFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQ 515

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           ++    +++D+  + G L++A  I   ++   D++ W T++  
Sbjct: 516 DLILNNALLDMYCKCGSLEDAKFIFNRMA-KKDVISWSTMIAG 557


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/583 (37%), Positives = 336/583 (57%), Gaps = 14/583 (2%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
             ++ L  C+  G +S    ++++A    +G     +  V++ +I  Y  S    L  A 
Sbjct: 165 TFSSALYACTVVGDISQG--REIEARTVASGYASDSI--VQNALINMY--SKCGSLESAR 218

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F ++       +N ++ G A     T A+  +++M     + + +T    L AC  + 
Sbjct: 219 KVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLE 278

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE-IVSAKKVFDEMGVRDIASWNALI 181
            L +   IH  V   G+ +D ++G  LL++Y K    +  A++VF+ M  RD+ +WN LI
Sbjct: 279 DLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILI 338

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
               Q   A +A+D+FK+M++E V  PNE+T+   L+AC  LGA ++G  +H  I   R 
Sbjct: 339 VAYVQYGQAKDALDIFKQMQLENV-APNEITLSNVLSACAVLGAKRQGKAVHALIASGRC 397

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
             +VV+ N++++MY +CG LD    VF  I+  KSLV+W+T++ A+A HG     LE F 
Sbjct: 398 KADVVLENSLMNMYNRCGSLDDTVGVFAAIR-DKSLVSWSTLIAAYAQHGHSRTGLEHFW 456

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRA 360
           ++ + G+  DDV+ ++ L AC+H G++ +GV+ F SM  + G+ P+ +H+  +VDLL RA
Sbjct: 457 ELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRA 516

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV-LL 419
           GRL+ A +++  +    D V W +LL  C+L+ D + A   + KL E+ S +    V LL
Sbjct: 517 GRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLL 576

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YA   RWDDV   RK    R  +K PG SYIE+   +H+F   DKSH +   I  ++
Sbjct: 577 SNVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEI 633

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
             +  ++K+ GY      VLH++ EEEKE  LCYHSEKLA+A+GLIST   T + + KNL
Sbjct: 634 KRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNL 693

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R C DCH   K IS++  R+I+VRD  RFH F++G+CSCKDYW
Sbjct: 694 RACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 195/354 (55%), Gaps = 9/354 (2%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + +I  YA     +L  A   F ++   +   +NA++ G + +     A+  Y+ M+  S
Sbjct: 98  TALITMYA--RCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKS 155

Query: 104 H---RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
               + DA+T S AL AC  V  + +  +I +  +  G+ +D+++   L+++Y+K G + 
Sbjct: 156 PEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLE 215

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           SA+KVFD +  RD+ +WN +I+G A+   A++A++LF+RM      KPN VT +G L AC
Sbjct: 216 SARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDP-KPNVVTFIGLLTAC 274

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC-GLLDKAFEVFDNIKCRKSLVT 279
            +L   ++G  IH  +RE+  + ++V+ N +++MY KC   L++A +VF+ ++ R  ++T
Sbjct: 275 TNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR-DVIT 333

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           WN +++A+  +G    AL++F+QM    V P++++    L AC   G    G  +   +A
Sbjct: 334 WNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIA 393

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +   K ++    S++++  R G L +   +  ++     +V W TL+ A   +G
Sbjct: 394 SGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIR-DKSLVSWSTLIAAYAQHG 446



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 194/373 (52%), Gaps = 10/373 (2%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           +A A A+F  I  P++  +  ++   A +     A+ +YR+M+    R D      A+  
Sbjct: 8   VADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGV 67

Query: 118 CARVLALFETLQIHSHVLRHGFLA-DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           C+    L +   +H+ +L    L  D +LGT L+ +YA+  ++  A+K FDEMG + + +
Sbjct: 68  CSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT 127

Query: 177 WNALIAGLAQGNLASEAVDLFKRM--KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
           WNALIAG ++      A+ +++ M  K     KP+ +T   AL AC  +G   +G +I  
Sbjct: 128 WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEA 187

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
                    + +V NA+I+MY+KCG L+ A +VFD +K R  ++ WNTM+  +A  G   
Sbjct: 188 RTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR-DVIAWNTMISGYAKQGAAT 246

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
           +ALELF++MG    KP+ V+++  L AC +   ++ G  +   +   G + ++     ++
Sbjct: 247 QALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLL 306

Query: 355 DLLGR-AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASRKLVEMGSNN 412
           ++  + +  L+EA  + + +    D++ W  L+ A   YG  + A +I  +  +E   N 
Sbjct: 307 NMYTKCSSSLEEARQVFERMRT-RDVITWNILIVAYVQYGQAKDALDIFKQMQLE---NV 362

Query: 413 CGDFVLLSNLYAA 425
             + + LSN+ +A
Sbjct: 363 APNEITLSNVLSA 375



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 162/334 (48%), Gaps = 14/334 (4%)

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
           +Y K G +  A  VF  +   +  SW  ++A  A+     EA+  ++RM +EG  +P+  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEG-LRPDGA 59

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
             + A+  C      K+G  +H  I E R L+ ++++  A+I MYA+C  L+ A + FD 
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM---GRAGVKPDDVSYLAALCACNHAGL 327
           +  +K+LVTWN ++  ++ +GD   AL++++ M      G+KPD +++ +AL AC   G 
Sbjct: 120 MG-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGD 178

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           +  G  +       G   +     +++++  + G L+ A  +   +    D++ W T++ 
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLK-NRDVIAWNTMIS 237

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNC-GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK 446
               Y     A  A      MG N+   + V    L  A    +D+ + R    +R V++
Sbjct: 238 G---YAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAI--HRKVRE 292

Query: 447 VPGFSYIEVGGVIHKFFTSDKSHV-KWREIYEKL 479
               S + +G V+   +T   S + + R+++E++
Sbjct: 293 DGYESDLVIGNVLLNMYTKCSSSLEEARQVFERM 326


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/453 (43%), Positives = 303/453 (66%), Gaps = 3/453 (0%)

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           +A A+++ + E  ++HS  +R+GF +   +  TL+ +YA  G   SA K+F+ M  R++ 
Sbjct: 3   RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLV 62

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           +WN++I G A     +EA+ LF+ M + GV +P+  T++  L+AC  LGA   G + H Y
Sbjct: 63  TWNSVINGYALNGRPNEALTLFREMGLRGV-EPDGFTMVSLLSACAELGALALGRRAHVY 121

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           + +  LD N+   NA++D+YAKCG + +A +VFD ++  KS+V+W ++++  AV+G G  
Sbjct: 122 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLIVGLAVNGFGKE 180

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVV 354
           ALELF+++ R G+ P +++++  L AC+H G+VD+G   F  M    G+ P ++HYG +V
Sbjct: 181 ALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMV 240

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLLGRAG +++A + ++++ M  + V+W+TLLGAC ++G + + E+A  +L+++   + G
Sbjct: 241 DLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSG 300

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
           D+VLLSNLYA+ +RW DV +VR+ M    VKK PG S +E+   +H+F   D+SH +  E
Sbjct: 301 DYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEE 360

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY KL EI   +K  GY    S VL DI EEEKE AL YHSEK+A+AF LI+T+    I+
Sbjct: 361 IYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIR 420

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           V KNLR+C DCH  IKLISKV++REI+VRDR R
Sbjct: 421 VVKNLRVCADCHLAIKLISKVFDREIVVRDRSR 453



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 139/259 (53%), Gaps = 7/259 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F+S +F V++ ++  YA     E   AH LF  +   +   +N+V+ G A + +P  A+ 
Sbjct: 26  FESLVF-VQNTLVHMYAACGHAE--SAHKLFELMAERNLVTWNSVINGYALNGRPNEALT 82

Query: 95  WYRQM-LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153
            +R+M LRG    D  T    L ACA + AL    + H ++++ G   +   G  LLD+Y
Sbjct: 83  LFREMGLRGVE-PDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLY 141

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           AK G I  A KVFDEM  + + SW +LI GLA      EA++LFK ++ +G+  P+E+T 
Sbjct: 142 AKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLM-PSEITF 200

Query: 214 LGALAACGHLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           +G L AC H G   EG    + ++EE  +   +     ++D+  + GL+ +A E   N+ 
Sbjct: 201 VGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMP 260

Query: 273 CRKSLVTWNTMVMAFAVHG 291
            + + V W T++ A  +HG
Sbjct: 261 MQPNAVVWRTLLGACTIHG 279


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/620 (34%), Positives = 351/620 (56%), Gaps = 52/620 (8%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +L Q CS+   V  +H   L+     T  F      V S+++  Y+   +N+L YA ++F
Sbjct: 21  SLFQTCSAPQEVEQLHAFSLK-----TAIFNHPF--VSSRLLALYSDPKINDLGYARSIF 73

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            +I   S   +N +++    +    + ++ + +++   +  D  T    +K CAR+  + 
Sbjct: 74  DRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQ 132

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA---------- 175
           E  QIH   L+ GF +D  +  +L+++Y+K GEI  A+KVFD M  +D+           
Sbjct: 133 EGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNL 192

Query: 176 -SWNALIAGLAQGNLASEAVDLFKRM---------------KMEGVF------------- 206
            SWNA+I G  +      A++LF +M               ++ G F             
Sbjct: 193 VSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKL 252

Query: 207 --KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
             +P+  T++  L+A   L    +G  IH Y+ +   +++ ++  ++I+MYAKCG ++ A
Sbjct: 253 GSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESA 312

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
             VF  I+ +K +  W  +++   +HG    AL LF +M + G+KP+ + ++  L ACNH
Sbjct: 313 LTVFRAIQ-KKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNH 371

Query: 325 AGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
           AGLVDDG + F+ M N   ++P ++HYG +VD+L RAG L+EA + ++++ +  + V+W 
Sbjct: 372 AGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWM 431

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443
           +LLG  + +G +++ E A+++++E+     G ++LLSN+YAA   W+ V  VR+ M  R 
Sbjct: 432 SLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRG 491

Query: 444 VKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI- 502
            +K PG S +E  G +H+F   D SH + +EIY K+ E+  K+K  G+   T+ VL  I 
Sbjct: 492 FRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIE 551

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
           GE+EKE  L  HSE+LA+AFGLI+      I++ KNLR+C DCH V KL+SK+Y+REIIV
Sbjct: 552 GEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIV 611

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFH FK+G+CSC DYW
Sbjct: 612 RDNCRFHHFKNGSCSCMDYW 631



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 25/244 (10%)

Query: 122 LALFETL-------QIHSHVLRHGFLADALLGTTLLDVYA--KVGEIVSAKKVFDEMGVR 172
           L+LF+T        Q+H+  L+        + + LL +Y+  K+ ++  A+ +FD +  R
Sbjct: 20  LSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRR 79

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
            +  WN +I    +   + + + LF  +  E  + P+  T+   +  C  LG  +EG +I
Sbjct: 80  SLIHWNTIIKCYVENQFSHDGIVLFHELVHE--YLPDNFTLPCVIKGCARLGVVQEGKQI 137

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD----------NIKCRKSLVTWNT 282
           H    +     +V V  ++++MY+KCG +D A +VFD          N     +LV+WN 
Sbjct: 138 HGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNA 197

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           M+  +   GD   ALELF QM       D V++   +      G   D V++F  M   G
Sbjct: 198 MINGYMKSGDFDSALELFYQMPIW----DLVTWNLMIAGYELNGQFMDAVKMFFMMLKLG 253

Query: 343 VKPN 346
            +P+
Sbjct: 254 SRPS 257


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 321/539 (59%), Gaps = 34/539 (6%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++    H    ++ ++   +ML+   R D +T    + ACA++  L      H++VL
Sbjct: 300 YNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVL 359

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVF----------------------------- 166
           R+G      +   ++D+Y K G+  +A KVF                             
Sbjct: 360 RNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWR 419

Query: 167 --DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
             DEM  RD+ SWN +I  L Q ++  EA++LF+ M+ +G+   + VT++G  +ACG+LG
Sbjct: 420 IFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGI-PGDRVTMVGIASACGYLG 478

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A      +  YI +  + +++ +  A++DM+++CG    A  VF  ++ ++ +  W   +
Sbjct: 479 ALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRME-KRDVSAWTAAI 537

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GV 343
              A+ G+   A+ELF +M    VKPDDV ++A L AC+H G VD G +LF SM    G+
Sbjct: 538 GVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGI 597

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
           +P++ HYG +VDLLGRAG L+EA D+++S+ +  + V+W +LL AC+ + +VE+A  A+ 
Sbjct: 598 RPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAE 657

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
           KL ++     G  VLLSN+YA+  +W DV RVR  MK + V+KVPG S IEV G+IH+F 
Sbjct: 658 KLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFT 717

Query: 464 TSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFG 523
           + D+SH +   I   L+EI  ++ E GY   T+ VL D+ E+EKE+ L  HSEKLA+A+G
Sbjct: 718 SGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYG 777

Query: 524 LISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LI+T +   I+V KNLR+C DCH   KL+SK+YNREI VRD  R+H FK+G CSC+DYW
Sbjct: 778 LITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 209/404 (51%), Gaps = 33/404 (8%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKII-EFYALSPLNELAYAHALF--RQINAPSTNDFNA 78
           +KQL   +   G    K     +K+I     +  L  L YA   F     N  S   +N 
Sbjct: 41  LKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNC 100

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           ++RG A +     A+L Y QML      D  T  F L AC+++LAL E +Q+H  VL+ G
Sbjct: 101 LIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMG 160

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
              D  +  +L+  YA+ G++   +K+FD M  R++ SW +LI G +  +L+ EAV LF 
Sbjct: 161 LEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFF 220

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
           +M   GV +PN VT++  ++AC  L   + G K+  YI E  ++++ ++ NA++DMY KC
Sbjct: 221 QMGEAGV-EPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKC 279

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G +  A ++FD     K+LV +NT++  +  H      L + ++M + G +PD V+ L+ 
Sbjct: 280 GDICAARQIFDEC-ANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLST 338

Query: 319 LCAC-----------NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
           + AC           +HA ++ +G+  +++++N           +++D+  + G+ + AC
Sbjct: 339 IAACAQLGDLSVGKSSHAYVLRNGLEGWDNISN-----------AIIDMYMKCGKREAAC 387

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-----EIASRKLV 406
            + + +   T +V W +L+      GD+E+A     E+  R LV
Sbjct: 388 KVFEHMPNKT-VVTWNSLIAGLVRDGDMELAWRIFDEMLERDLV 430



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 114/235 (48%), Gaps = 2/235 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           ++  A  +F ++       +N ++  L   S    A+  +R+M       D +T      
Sbjct: 413 DMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIAS 472

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC  + AL     + +++ ++    D  LGT L+D++++ G+  SA  VF  M  RD+++
Sbjct: 473 ACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSA 532

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W A I  +A       A++LF  M +E   KP++V  +  L AC H G+  +G ++   +
Sbjct: 533 WTAAIGVMAMEGNTEGAIELFNEM-LEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSM 591

Query: 237 REER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +   +  ++V    ++D+  + GLL++A ++  ++    + V W +++ A   H
Sbjct: 592 EKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKH 646


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/437 (44%), Positives = 288/437 (65%), Gaps = 3/437 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            T++  YA+ G+I  AK +FD+M  RD  SW A+IAG +Q   + EA+ LF  M+ EG  
Sbjct: 342 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGG- 400

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           + N  +   AL+ C  + A + G ++H  + +   +    V NA++ MY KCG +++A +
Sbjct: 401 RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAND 460

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +F  +   K +V+WNTM+  ++ HG G  AL  FE M R G+KPDD + +A L AC+H G
Sbjct: 461 LFKEM-AGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTG 519

Query: 327 LVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LVD G + F++M  + GV+PN +HY  +VDLLGRAG L+EA +++K++    D  +W TL
Sbjct: 520 LVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTL 579

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGA +++G+ E+AE A+ K+  M   N G +VLLSNLYA+  RW DVG++R  M+++ VK
Sbjct: 580 LGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVK 639

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           KVPG+S+IE+    H F   D+ H +  EI+  L+++  ++K+ GY + TS VLHD+ EE
Sbjct: 640 KVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEE 699

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE  + YHSE+LAVA+G++  S    I+V KNLR+C DCH+ IK ++KV  R II+RD 
Sbjct: 700 EKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDN 759

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH FKDG+CSC DYW
Sbjct: 760 NRFHHFKDGSCSCGDYW 776



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 120/237 (50%), Gaps = 2/237 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +++ A  LF ++       + A++ G + S     A+  +  M R   R +  + S AL 
Sbjct: 353 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALS 412

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            CA V+AL    Q+H  +++ G+     +G  LL +Y K G I  A  +F EM  +DI S
Sbjct: 413 TCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 472

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK-IHEY 235
           WN +IAG ++     EA+  F+ MK EG+ KP++ T++  L+AC H G   +G +  H  
Sbjct: 473 WNTMIAGYSRHGFGEEALRFFESMKREGL-KPDDATMVAVLSACSHTGLVDKGRQYFHTM 531

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            ++  +  N      ++D+  + GLL++A  +  N+        W T++ A  VHG+
Sbjct: 532 TQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGN 588



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 155/348 (44%), Gaps = 57/348 (16%)

Query: 71  PSTND--FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL-------KACARV 121
           P  ND  +NA+L     +SK   A +     L GS  + AL     L       K     
Sbjct: 179 PEKNDVSWNALLSAYVQNSKLEEACV-----LFGSRENWALVSWNCLLGGFVKKKKIVEA 233

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
              F+++++           D +   T++  YA+ GEI  A+++FDE  V D+ +W A++
Sbjct: 234 RQFFDSMKVR----------DVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMV 283

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           +G  Q  +  EA +LF RM      + NEV+    LA                Y++ ER+
Sbjct: 284 SGYIQNRMVEEARELFDRMP-----ERNEVSWNAMLAG---------------YVQGERV 323

Query: 242 DM-----------NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           +M           NV   N +I  YA+CG + +A  +FD +  R   V+W  M+  ++  
Sbjct: 324 EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP-VSWAAMIAGYSQS 382

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
           G    AL LF  M R G + +  S+ +AL  C     ++ G +L   +   G +      
Sbjct: 383 GHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVG 442

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +++ +  + G ++EA D+ K ++ G D+V W T++     +G  E A
Sbjct: 443 NALLLMYCKCGSIEEANDLFKEMA-GKDIVSWNTMIAGYSRHGFGEEA 489



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 44/300 (14%)

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           R  NA S ++F++     + SS  T       + L  S  SD    + A+ +  R     
Sbjct: 22  RYNNANSASNFHS-----SKSSTQTQIQKSQTKPLPKSGDSDIKEWNVAISSYMRTGRCS 76

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E L++   + R      ++    ++  Y + GE   A+ +FDEM  RD+ SWN +I G  
Sbjct: 77  EALRVFKRMPRW----SSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYV 132

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG----------------------HL 223
           +     +A +LF+RM    V   N  T+L   A  G                       L
Sbjct: 133 RNRNLGKARELFERMPERDVCSWN--TILSGYAQNGCVDDARRVFDRMPEKNDVSWNALL 190

Query: 224 GAWKEGDKIHE--YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            A+ +  K+ E   +   R +  +V  N ++  + K   + +A + FD++K R  +V+WN
Sbjct: 191 SAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVR-DVVSWN 249

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKP--DDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           T++  +A +G+   A +LF++       P  D  ++ A +       +V++   LF+ M 
Sbjct: 250 TIITGYAQNGEIDEARQLFDE------SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMP 303



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 129/341 (37%), Gaps = 73/341 (21%)

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           S  K   + G  DI  WN  I+   +    SEA+ +FKRM                    
Sbjct: 46  SQTKPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMP------------------- 86

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
                W                   V  NA+I  Y + G  + A  +FD +  R  LV+W
Sbjct: 87  ----RWSS-----------------VSYNAMISGYLRNGEFELARMLFDEMPER-DLVSW 124

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           N M+  +  + +  +A ELFE+M     + D  S+   L      G VDD  R+F+ M  
Sbjct: 125 NVMIKGYVRNRNLGKARELFERM----PERDVCSWNTILSGYAQNGCVDDARRVFDRMP- 179

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
              + N   + +++    +  +L+EAC +  S      +V W  LLG            +
Sbjct: 180 ---EKNDVSWNALLSAYVQNSKLEEACVLFGSRE-NWALVSWNCLLGGF----------V 225

Query: 401 ASRKLVE----MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
             +K+VE      S    D V  + +   Y +  ++   R+      V  V  ++ + V 
Sbjct: 226 KKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAM-VS 284

Query: 457 GVIHKFFTSDKSHVKWREIYEKL---DEIMFKIKEYGYAAG 494
           G I      +      RE+++++   +E+ +     GY  G
Sbjct: 285 GYIQNRMVEEA-----RELFDRMPERNEVSWNAMLAGYVQG 320


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/543 (39%), Positives = 326/543 (60%), Gaps = 6/543 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML- 100
           V + +++ YA      L YA  +F  +   +   ++A++ G     +   A   ++ ML 
Sbjct: 270 VGTALLDMYA--KCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLA 327

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
           +G       + + AL+ACA +  L    Q+H+ + + G   D   G +LL +YAK G I 
Sbjct: 328 QGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLID 387

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
            A  +FD+M V+D  S++AL++G  Q   A EA  +F++M+   V +P+  T++  + AC
Sbjct: 388 QATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNV-QPDVATMVSLIPAC 446

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
            HL A + G   H  +    +     +CNA+IDMYAKCG +D + ++FD +  R  +V+W
Sbjct: 447 SHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPAR-DIVSW 505

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           NTM+  + +HG G  A  LF  M     +PDDV+++  + AC+H+GLV +G R F+ MA+
Sbjct: 506 NTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAH 565

Query: 341 -CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             G+ P M+HY  +VDLL R G L EA   ++ + +  D+ +W  LLGAC+++ ++++ +
Sbjct: 566 KYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGK 625

Query: 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
             S  + ++G    G+FVLLSN+++A  R+D+   VR   K +  KK PG S+IE+ G +
Sbjct: 626 QVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSL 685

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H F   D+SH +  EIY++LD I+  I + GY A TS VL D+ EEEKE AL YHSEKLA
Sbjct: 686 HAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLA 745

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +AFG+++ SE  +I V KNLR+C DCH VIK ++ V  R IIVRD  RFH FK+G CSC 
Sbjct: 746 IAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCG 805

Query: 580 DYW 582
           D+W
Sbjct: 806 DFW 808



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 191/395 (48%), Gaps = 14/395 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           + +  H    G   + LF V + +++ YA        +A  +FR++ A     +NA+L G
Sbjct: 149 RAVHCHAARAG-LHADLF-VSTALVDVYA--KCASFRHAATVFRRMPARDVVAWNAMLAG 204

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A   K ++ +     +++  H  +A T    L   A+  AL +   +H++ +R   L D
Sbjct: 205 YALHGKYSDTIACL-LLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHD 263

Query: 143 ----ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
                L+GT LLD+YAK G +V A +VF+ M VR+  +W+AL+ G        EA  LFK
Sbjct: 264 HKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFK 323

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            M  +G+   +  +V  AL AC +L     G ++H  + +  L  ++   N+++ MYAK 
Sbjct: 324 DMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKA 383

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           GL+D+A  +FD +   K  V+++ +V  +  +G    A  +F +M    V+PD  + ++ 
Sbjct: 384 GLIDQATTLFDQMVV-KDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSL 442

Query: 319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
           + AC+H   +  G     S+   G+        +++D+  + GR+  +  I   V    D
Sbjct: 443 IPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIF-DVMPARD 501

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           +V W T++     YG   + + A+   ++M    C
Sbjct: 502 IVSWNTMIAG---YGIHGLGKEATALFLDMKHQAC 533



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 168/356 (47%), Gaps = 13/356 (3%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L+ A  LF QI AP  +D+NA++R  +         L+     R   + +  T  F LK
Sbjct: 78  DLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLK 137

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC+ +L L     +H H  R G  AD  + T L+DVYAK      A  VF  M  RD+ +
Sbjct: 138 ACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVA 197

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY- 235
           WNA++AG A     S+ +     + M+    PN  T++  L      GA  +G  +H Y 
Sbjct: 198 WNAMLAGYALHGKYSDTIACL--LLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYS 255

Query: 236 IREERLDMN---VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           +R   L  +   V+V  A++DMYAKCG L  A  VF+ +  R   VTW+ +V  F + G 
Sbjct: 256 VRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNE-VTWSALVGGFVLCGR 314

Query: 293 GPRALELFEQM---GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKH 349
              A  LF+ M   G   + P  V+  +AL AC +   +  G +L   +A  G+  ++  
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHALLAKSGLHTDLTA 372

Query: 350 YGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
             S++ +  +AG + +A  +   + +  D V +  L+      G  + A    RK+
Sbjct: 373 GNSLLSMYAKAGLIDQATTLFDQMVV-KDTVSYSALVSGYVQNGKADEAFRVFRKM 427



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
           G++  A+ +FD++    I  +NALI   +    A          +     +PN  T    
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLP-QPNNYTFPFV 135

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
           L AC  L   +    +H +     L  ++ V  A++D+YAKC     A  VF  +  R  
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR-D 194

Query: 277 LVTWNTMVMAFAVHG 291
           +V WN M+  +A+HG
Sbjct: 195 VVAWNAMLAGYALHG 209


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/532 (38%), Positives = 322/532 (60%), Gaps = 10/532 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  LF + +    + +N ++ GL      T A+   +QM+R        T S    
Sbjct: 207 DLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFA 266

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV----R 172
               + +     Q+H  V+      DA +G +L+D+Y K GE+ SA  +FD        R
Sbjct: 267 LAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDR 326

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA-ACGHLGAWKEGDK 231
             A W+ ++AG  Q     EA++ F+RM  EGV  P    +L ++A AC + G  ++G +
Sbjct: 327 QFA-WSTMVAGYVQNGREEEALEFFRRMLREGV--PAGQFILTSVASACANAGMVEQGRQ 383

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +H ++ +     +  + +A++DMY+K G L+ A  +F + +  K++  W TM+ ++A HG
Sbjct: 384 VHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQT-KNVALWTTMLCSYASHG 442

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHY 350
            G  ALE+F +M    + P++++ +A L AC+H+GLV DG   FN M    G+ PN +HY
Sbjct: 443 QGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHY 502

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
             +VDL GRAG L +A + ++   +  + V+W+TLL AC+L+  +E A++AS KLV++  
Sbjct: 503 NCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQ 562

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
            + G +VL+SN+YA   +W D  ++R +MK R V+K PG S+I +  V+H+F   D SH 
Sbjct: 563 YDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHP 622

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           +  EIY  L+++M ++KE GY + T  V+HDI EE++E +L +HSEKLA+AFG+IST   
Sbjct: 623 RSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVG 682

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           T++++FKNLR+C DCH+ IK I++  +REI+VRD  RFH FKDG CSC+D+W
Sbjct: 683 TALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 176/386 (45%), Gaps = 38/386 (9%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR--GSHRSDALTCSFAL 115
           L  AH +F      S   + +++ G A   +  + +  + +ML   G+   +A   +  L
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE----------------- 158
           + CA +  +    +IH  +LR G   D +L   +LD+YAK G+                 
Sbjct: 134 RCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDAT 193

Query: 159 --------------IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
                         +V A ++FDE  +RD++SWN +++GL +    +EA+   ++M   G
Sbjct: 194 SWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAG 253

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
           V   N  T     A  G L +   G ++H  +    L+ +  V  +++DMY KCG ++ A
Sbjct: 254 VTFSN-YTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESA 312

Query: 265 FEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
             +FD            W+TMV  +  +G    ALE F +M R GV        +   AC
Sbjct: 313 LSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASAC 372

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
            +AG+V+ G ++   +   G + +     ++VD+  ++G L++AC I +S     ++ LW
Sbjct: 373 ANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQT-KNVALW 431

Query: 383 QTLLGACQLYGDVEMA-EIASRKLVE 407
            T+L +   +G   MA EI SR   E
Sbjct: 432 TTMLCSYASHGQGRMALEIFSRMKAE 457


>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
          Length = 613

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/533 (37%), Positives = 321/533 (60%), Gaps = 10/533 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGL-----AHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           +AYA ++F  ++ P   D+N ++RG           P  A+  +  M+      D+ T  
Sbjct: 83  MAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYTFP 142

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM--G 170
           F  KACA++ AL E  Q+  H+++ GF  D     +L+  Y K GE   A++ F++M   
Sbjct: 143 FVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDD 202

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            +  ASW+AL+A   +    +E V+ F  M   G ++P+E +++ AL+AC HLGA   G 
Sbjct: 203 EQTTASWSALLAAYTRAGRWAECVESFGAMVRAG-WRPDESSMVSALSACAHLGAHDVGR 261

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            IH  +      +N  +  +++DMYAKCG ++ A  VFD +   K+  T++ MV   A+H
Sbjct: 262 SIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMD-DKNAWTYSAMVSGLALH 320

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKH 349
           GDG +ALE+F+ M R G +PD   Y+  L AC+ AGL+++G+R F+ M     + PN +H
Sbjct: 321 GDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQH 380

Query: 350 YGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           YG +VDL+ RAGRL +A  ++ ++  G     W++LL AC+++G++E+AE A ++L  +G
Sbjct: 381 YGCMVDLMARAGRLDDARALIGNMPTGPTDTAWRSLLNACRIHGNLELAERALQELERLG 440

Query: 410 SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
           + N GD+++LS+++A     D     R    +R + + PG+S +EV G  H+F + D+SH
Sbjct: 441 ATNAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSH 500

Query: 470 VKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSE 529
            +  +IYE L ++ ++++  GY   TS +  D GEEEK   +  HS+KLA+AFGL+ST E
Sbjct: 501 PRADDIYEMLHQMEWQLRFEGYTPDTSELALDAGEEEKRRVVAAHSQKLAMAFGLLSTPE 560

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
              ++V  NLR+ ++CH    LIS+++ REI+VRDR RFHRFK GACSC +YW
Sbjct: 561 GAPVRVVTNLRMSKECHAYSALISEIFGREIVVRDRNRFHRFKRGACSCGNYW 613


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/550 (38%), Positives = 320/550 (58%), Gaps = 34/550 (6%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL----- 115
           A   F  +N      +N ++ G A S K   A    RQ+   S   D  T +  +     
Sbjct: 238 ARQFFDSMNVRDVVSWNTIITGYAQSGKIDEA----RQLFDESPVQDVFTWTAMVSGYIQ 293

Query: 116 -KACARVLALFETLQIHSHVLRHGFLADALLG---------------------TTLLDVY 153
            +       LF+ +   + V  +  LA  + G                      T++  Y
Sbjct: 294 NRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGY 353

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           A+ G+I  AK +FD+M  RD  SW A+IAG +Q   + EA+ LF +M+ EG  + N  + 
Sbjct: 354 AQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG-RLNRSSF 412

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
             AL+ C  + A + G ++H  + +   +    V NA++ MY KCG +++A ++F  +  
Sbjct: 413 SSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM-A 471

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
            K +V+WNTM+  ++ HG G  AL  FE M R G+KPDD + +A L AC+H GLVD G +
Sbjct: 472 GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531

Query: 334 LFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            F +M  + GV PN +HY  +VDLLGRAG L++A +++K++    D  +W TLLGA +++
Sbjct: 532 YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVH 591

Query: 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSY 452
           G+ E+AE A+ K+  M   N G +VLLSNLYA+  RW DVG++R  M+++ VKKVPG+S+
Sbjct: 592 GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSW 651

Query: 453 IEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALC 512
           IE+    H F   D+ H +  EI+  L+E+  ++K+ GY + TS VLHD+ EEEKE  + 
Sbjct: 652 IEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVR 711

Query: 513 YHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
           YHSE+LAVA+G++  S    I+V KNLR+C DCH+ IK ++++  R II+RD  RFH FK
Sbjct: 712 YHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFK 771

Query: 573 DGACSCKDYW 582
           DG+CSC DYW
Sbjct: 772 DGSCSCGDYW 781



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 26/273 (9%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           LL  + K  +IV A++ FD M VRD+ SWN +I G AQ     EA  LF    ++ VF  
Sbjct: 225 LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTW 284

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHE------------YIREERLDM-----------NV 245
             + V G +       A +  DK+ E            Y++ ER++M           NV
Sbjct: 285 TAM-VSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNV 343

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
              N +I  YA+CG + +A  +FD +  ++  V+W  M+  ++  G    AL LF QM R
Sbjct: 344 STWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSGHSFEALRLFVQMER 402

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            G + +  S+ +AL  C     ++ G +L   +   G +       +++ +  + G ++E
Sbjct: 403 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEE 462

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           A D+ K ++ G D+V W T++     +G  E+A
Sbjct: 463 ANDLFKEMA-GKDIVSWNTMIAGYSRHGFGEVA 494



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 105/246 (42%), Gaps = 41/246 (16%)

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C   L +F+ +   S V  +G ++           Y + GE   A+K+FDEM  RD+ SW
Sbjct: 80  CNEALRVFKRMPRWSSVSYNGMISG----------YLRNGEFELARKLFDEMPERDLVSW 129

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG---------------- 221
           N +I G  +     +A +LF+ M    V   N  T+L   A  G                
Sbjct: 130 NVMIKGYVRNRNLGKARELFEIMPERDVCSWN--TMLSGYAQNGCVDDARSVFDRMPEKN 187

Query: 222 ------HLGAWKEGDKIHE--YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
                  L A+ +  K+ E   + + R +  +V  N ++  + K   + +A + FD++  
Sbjct: 188 DVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNV 247

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
           R  +V+WNT++  +A  G    A +LF++        D  ++ A +       +V++   
Sbjct: 248 R-DVVSWNTIITGYAQSGKIDEARQLFDE----SPVQDVFTWTAMVSGYIQNRMVEEARE 302

Query: 334 LFNSMA 339
           LF+ M 
Sbjct: 303 LFDKMP 308



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 129/341 (37%), Gaps = 73/341 (21%)

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           S  K   + G  DI  WN  I+   +    +EA+ +FKRM                    
Sbjct: 51  SQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMP------------------- 91

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
                W                   V  N +I  Y + G  + A ++FD +  R  LV+W
Sbjct: 92  ----RWSS-----------------VSYNGMISGYLRNGEFELARKLFDEMPER-DLVSW 129

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           N M+  +  + +  +A ELFE M     + D  S+   L      G VDD   +F+ M  
Sbjct: 130 NVMIKGYVRNRNLGKARELFEIM----PERDVCSWNTMLSGYAQNGCVDDARSVFDRMP- 184

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
              + N   + +++    +  +++EAC + KS      +V W  LLG            +
Sbjct: 185 ---EKNDVSWNALLSAYVQNSKMEEACMLFKSRE-NWALVSWNCLLGGF----------V 230

Query: 401 ASRKLVE----MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
             +K+VE      S N  D V  + +   Y +   +   R+      V+ V  ++ + V 
Sbjct: 231 KKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAM-VS 289

Query: 457 GVIHKFFTSDKSHVKWREIYEKL---DEIMFKIKEYGYAAG 494
           G I      +      RE+++K+   +E+ +     GY  G
Sbjct: 290 GYIQNRMVEEA-----RELFDKMPERNEVSWNAMLAGYVQG 325



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 50/249 (20%)

Query: 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN 209
           +  Y + G    A +VF  M      S+N +I+G  +      A  LF  M         
Sbjct: 71  ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP-------- 122

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
                                           + ++V  N +I  Y +   L KA E+F+
Sbjct: 123 --------------------------------ERDLVSWNVMIKGYVRNRNLGKARELFE 150

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
            I   + + +WNTM+  +A +G    A  +F++M     + +DVS+ A L A      ++
Sbjct: 151 -IMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQNSKME 205

Query: 330 DGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           +   LF S  N      +  +  ++    +  ++ EA     S+++  D+V W T++   
Sbjct: 206 EACMLFKSRENWA----LVSWNCLLGGFVKKKKIVEARQFFDSMNV-RDVVSWNTIITGY 260

Query: 390 QLYGDVEMA 398
              G ++ A
Sbjct: 261 AQSGKIDEA 269


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/563 (38%), Positives = 322/563 (57%), Gaps = 36/563 (6%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSF 113
           + ++  A A F Q+       +N+++ G         A+  + +MLR S  S D  T + 
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLAS 284

Query: 114 ALKACARVLALFETLQIHSHVLRHGF-----LADALLG---------------------- 146
            L ACA +  L    QIHSH++  GF     + +AL+                       
Sbjct: 285 VLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344

Query: 147 ------TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
                 T LLD Y K+G++  AK +F  +  RD+ +W A+I G  Q     EA++LF+ M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSM 404

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
            + G  +PN  T+   L+    L +   G +IH    +     +V V NA+I MYAK G 
Sbjct: 405 -VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGN 463

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +  A   FD I+C +  V+W +M++A A HG    ALELFE M   G++PD ++Y+    
Sbjct: 464 ITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFS 523

Query: 321 ACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC HAGLV+ G + F+ M +   + P + HY  +VDL GRAG LQEA + ++ + +  D+
Sbjct: 524 ACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDV 583

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           V W +LL AC+++ ++++ ++A+ +L+ +   N G +  L+NLY+A  +W++  ++RK+M
Sbjct: 584 VTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSM 643

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           K+  VKK  GFS+IEV   +H F   D +H +  EIY  + +I  +IK+ GY   T+ VL
Sbjct: 644 KDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVL 703

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           HD+ EE KE  L +HSEKLA+AFGLIST + T++++ KNLR+C DCH  IK ISK+  RE
Sbjct: 704 HDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGRE 763

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           IIVRD  RFH FKDG CSC+DYW
Sbjct: 764 IIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 164/399 (41%), Gaps = 65/399 (16%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
            F Q+    +  +  ++ G  +  +   A+     M++        T +  L + A    
Sbjct: 102 FFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRC 161

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA- 182
           +    ++HS +++ G   +  +  +LL++YAK G+ + AK VFD M VRDI+SWNA+IA 
Sbjct: 162 METGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIAL 221

Query: 183 ------------------------------GLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
                                         G  Q      A+D+F +M  + +  P+  T
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFT 281

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG------------- 259
           +   L+AC +L     G +IH +I     D++ +V NA+I MY++CG             
Sbjct: 282 LASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG 341

Query: 260 -----------LLD---------KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
                      LLD         +A  +F ++K R  +V W  M++ +  HG    A+ L
Sbjct: 342 TKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDR-DVVAWTAMIVGYEQHGSYGEAINL 400

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           F  M   G +P+  +  A L   +    +  G ++  S    G   ++    +++ +  +
Sbjct: 401 FRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAK 460

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           AG +  A      +    D V W +++ A   +G  E A
Sbjct: 461 AGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEA 499



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 142/334 (42%), Gaps = 71/334 (21%)

Query: 108 ALTCSFALKACARVL--------ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
            L+ S  L+ C  +L          F    +H  V++ G +    L   L++VY+K G  
Sbjct: 6   PLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYA 65

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQ-GNLAS--------------------------- 191
           + A+K+FDEM +R   SWN +++  ++ G++ S                           
Sbjct: 66  LHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIG 125

Query: 192 ---EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
              +A+ +   M  EG+ +P + T+   LA+       + G K+H +I +  L  NV V 
Sbjct: 126 QYHKAIRVMGDMVKEGI-EPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVS 184

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCR------------------------------KSLV 278
           N++++MYAKCG    A  VFD +  R                              + +V
Sbjct: 185 NSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV 244

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           TWN+M+  F   G   RAL++F +M R   + PD  +  + L AC +   +  G ++ + 
Sbjct: 245 TWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSH 304

Query: 338 MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
           +   G   +     +++ +  R G ++ A  +++
Sbjct: 305 IVTTGFDISGIVLNALISMYSRCGGVETARRLIE 338


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/529 (40%), Positives = 313/529 (59%), Gaps = 4/529 (0%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSF 113
           +  +  A  LF ++       +NAV+ G         A+  +R M    S   +  T S 
Sbjct: 142 VGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSS 201

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           AL A A + +L    +IH +++R G   D ++ T LLD+Y K G +  A+ +FD+M  +D
Sbjct: 202 ALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKD 261

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           I SW  +I    +     E   LF+ +   GV +PNE T  G L AC  L A + G ++H
Sbjct: 262 IVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGV-RPNEYTFAGVLNACADLAAEQMGKEVH 320

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            Y+     D      +A++ +Y+KCG  + A  VF+ +  R  LV+W ++++ +A +G  
Sbjct: 321 GYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMP-RPDLVSWTSLIVGYAQNGQP 379

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGS 352
             AL+ FE + R+G KPD+++++  L AC HAGLVD G+  F+S+    G+     HY  
Sbjct: 380 DMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYAC 439

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           V+DLL R+GR +EA +I+ ++ M  D  LW +LLG C+++G++E+AE A++ L E+   N
Sbjct: 440 VIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPEN 499

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW 472
              ++ LSN+YA    W +  +VR  M NR + K PG S+IE+   +H F   D SH K 
Sbjct: 500 PATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKI 559

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
            +I+E L E+  K+KE GY A T+ VLHD+ EE+KE  + YHSEKLAVAFG+ISTS  T 
Sbjct: 560 SDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTP 619

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDY 581
           I+VFKNLR C DCH+ +K ISK+  R+IIVRD  RFH F DG+CSCKDY
Sbjct: 620 IKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 124/252 (49%), Gaps = 2/252 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            T++  YA VG I  A+K+FDEM  RD  SWNA+I+G        EA+DLF+ M+     
Sbjct: 133 NTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESS 192

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
             N  T+  ALAA   + + + G +IH Y+    L+++ VV  A++D+Y KCG L++A  
Sbjct: 193 NCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARG 252

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +FD +   K +V+W TM+      G       LF  +  +GV+P++ ++   L AC    
Sbjct: 253 IFDQM-ADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLA 311

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
               G  +   M   G  P      ++V +  + G  + A  +   +    D+V W +L+
Sbjct: 312 AEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPR-PDLVSWTSLI 370

Query: 387 GACQLYGDVEMA 398
                 G  +MA
Sbjct: 371 VGYAQNGQPDMA 382


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/423 (44%), Positives = 285/423 (67%), Gaps = 2/423 (0%)

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           SA KVF+ M  +DI +WN++I G A     +EA+ L+KRM  EGV +P+  T++  L+AC
Sbjct: 59  SAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGV-EPDGFTMVSLLSAC 117

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
             L     G + H Y+ +  L+ N+   NA++D+YAKCG + +A ++FD +   +++V+W
Sbjct: 118 AELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSW 177

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA- 339
            ++++  AV+G G  ALE F+ M R G+ P +++++  L AC+H G+V++G   F  M  
Sbjct: 178 TSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKE 237

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
              + P ++HYG +VDLLGRAG L+EA D ++ + +  + V+W+TLLGAC ++G + +  
Sbjct: 238 QYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGA 297

Query: 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
            A  +L+++   + GD+VLLSNLYA+ +RW DV  VR+ M +  V+K PG+S +E+G  +
Sbjct: 298 FARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHV 357

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H+F   D++H +   IY+ L E+  K+K  GY   T+ VL DI EEEKE+AL YHSEK+A
Sbjct: 358 HEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIA 417

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +AF LI+T   T I++ KNLR+C DCH  IKLISKV+ R+I+VRD  RFH F+DG+CSC+
Sbjct: 418 IAFMLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCR 477

Query: 580 DYW 582
           DYW
Sbjct: 478 DYW 480



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 9/236 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A+ +F  +       +N+V+ G A + KP  A+  Y++M       D  T    L ACA 
Sbjct: 60  AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAE 119

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-RDIASWNA 179
           +  L    + H ++++ G   +      LLD+YAK G I  A+K+FDEMG+ R++ SW +
Sbjct: 120 LATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTS 179

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           LI GLA      EA++ FK M+ EG+  P+E+T +G L AC H G   EG    EY +  
Sbjct: 180 LIVGLAVNGFGKEALEHFKDMEREGLV-PSEITFVGVLYACSHCGIVNEG---FEYFKRM 235

Query: 240 RLDMNVVV----CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +   ++V        ++D+  + GLL +A++   ++  + + V W T++ A  +HG
Sbjct: 236 KEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHG 291


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/612 (37%), Positives = 348/612 (56%), Gaps = 51/612 (8%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL  CS+    S +H   ++  L +          V  ++   YA S    L ++  L 
Sbjct: 29  SLLAACSTARRASELHAAVVRKGLDSDRA-------VAFRLQRAYAAS--GRLDHSLTLL 79

Query: 66  RQINAPSTNDFNAVLRGLAHSSK----PTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
            +   P+T  + + +   AHSS+    P  A+L    ML       A T S +L AC R 
Sbjct: 80  GRTKDPTTIFYTSAIH--AHSSRGLHLPGLALL--SDMLSEGLLPTAHTLSASLPAC-RG 134

Query: 122 LALFETLQIHSHVLR---HGFLADALLG--------------------------TTLLDV 152
           L+L   L  ++  L      ++A ALL                           T +L  
Sbjct: 135 LSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTC 194

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           YA +G +  A+++FD +  +D   WNA+I G  Q    +EA+ LF+RM +    +P+EVT
Sbjct: 195 YANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRM-LRSSAEPDEVT 253

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           V+  L+A   LG  + G  +H Y++  R + +NV V  A++DMY KCG L+ A  VF  I
Sbjct: 254 VVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGI 313

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
              K +V WN M+  +A+HGD  +ALE+F Q+   G+ P D++++  L AC+H+GLV++G
Sbjct: 314 G-NKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEG 372

Query: 332 VRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
              F SM +  G+ P ++HYG +VDLLGRAG ++EA  +V+S+++  D V+W +LL AC+
Sbjct: 373 RSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACR 432

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
           L+ ++ + +  +  LV  G  N G ++LLSN+YAA  +W++V RVR  MK   ++K PG 
Sbjct: 433 LHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGC 492

Query: 451 SYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           S IE+   +++F   D SH    EIY  LD++   +KE+G+   T  VLHD+ E  KE A
Sbjct: 493 SAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKA 552

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           L  HSEKLAVAFGLIS+   ++I++ KNLR C DCH V+KLISK+ +R+I+ RDR RFH 
Sbjct: 553 LAVHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHH 612

Query: 571 FKDGACSCKDYW 582
           F DG+C+C DYW
Sbjct: 613 FVDGSCTCGDYW 624


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/562 (38%), Positives = 335/562 (59%), Gaps = 11/562 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQL + +  +G   S +F V   +++ YA S   E   +  +F  +   +   + A++ G
Sbjct: 268 KQLHSWVIRSG-LASDVF-VGCTLVDMYAKSAAVE--NSRKIFNTMLHHNVMSWTALISG 323

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              S +   A+  +  ML G    +  T S  LKACA +       Q+H   ++ G    
Sbjct: 324 YVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTI 383

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G +L+++YA+ G +  A+K F+ +  +++ S+N      A+   + E+ +    ++ 
Sbjct: 384 NCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVEH 441

Query: 203 EGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            GV   P     L + AAC  +G   +G++IH  I +     N+ + NA+I MY+KCG  
Sbjct: 442 TGVGASPFTYACLLSGAAC--IGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNK 499

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           + A +VF+++  R +++TW +++  FA HG   +ALELF +M   GVKP++V+Y+A L A
Sbjct: 500 EAALQVFNDMGYR-NVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSA 558

Query: 322 CNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C+H GL+D+  + FNSM  N  + P M+HY  +VDLLGR+G L EA + + S+    D +
Sbjct: 559 CSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADAL 618

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +W+T LG+C+++ + ++ E A++K++E   ++   ++LLSNLYA+  RWDDV  +RK+MK
Sbjct: 619 VWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMK 678

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
            + + K  G+S+IEV   +HKF   D SH + R+IY++LDE+  KIK  GY   T  VLH
Sbjct: 679 QKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLH 738

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           D+ +E+KE  L  HSEK+AVA+ LIST +   I+VFKNLR+C DCH  IK IS V  REI
Sbjct: 739 DVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREI 798

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           +VRD  RFH  KDG CSC DYW
Sbjct: 799 VVRDANRFHHIKDGKCSCNDYW 820



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 152/321 (47%), Gaps = 9/321 (2%)

Query: 91  NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150
           +AV  + ++L   +  D  T +  L AC  +       Q+HS V+R G  +D  +G TL+
Sbjct: 231 DAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLV 290

Query: 151 DVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE 210
           D+YAK   + +++K+F+ M   ++ SW ALI+G  Q     EA+ LF  M + G   PN 
Sbjct: 291 DMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNM-LHGHVTPNC 349

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC--NAVIDMYAKCGLLDKAFEVF 268
            T    L AC  L  +  G ++H   +  +L ++ + C  N++I+MYA+ G ++ A + F
Sbjct: 350 FTFSSVLKACASLPDFGIGKQLHG--QTIKLGLSTINCVGNSLINMYARSGTMECARKAF 407

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
            NI   K+L+++NT   A A   D   +     ++   GV     +Y   L      G +
Sbjct: 408 -NILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTI 464

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
             G ++   +   G   N+    +++ +  + G  + A  +   +    +++ W +++  
Sbjct: 465 VKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGY-RNVITWTSIISG 523

Query: 389 CQLYGDVEMAEIASRKLVEMG 409
              +G    A     +++E+G
Sbjct: 524 FAKHGFATKALELFYEMLEIG 544



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 167/359 (46%), Gaps = 15/359 (4%)

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
           S  +  S  LKAC R   L     +H  ++  G   D++L  +L+ +Y+K G+  +A  +
Sbjct: 37  SPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSI 96

Query: 166 FDEMG--VRDIASWNALIAGLAQGNLASEAVDLFKRMKM--EGVFKPNEVTVLGALAACG 221
           F  MG   RD+ SW+A+I+  A  ++ S A+  F  M      +  PNE      L +C 
Sbjct: 97  FRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCS 156

Query: 222 HLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGL-LDKAFEVFDNIKCRKSLVT 279
           +   +  G  I  ++ +    D +V V  A+IDM+ K GL +  A  VFD ++  K+LVT
Sbjct: 157 NPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQ-HKNLVT 215

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           W  M+  ++  G    A++LF ++  +   PD  +  + L AC        G +L + + 
Sbjct: 216 WTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVI 275

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL-GACQLYGDVEMA 398
             G+  ++    ++VD+  ++  ++ +  I  ++ +  +++ W  L+ G  Q   + E  
Sbjct: 276 RSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTM-LHHNVMSWTALISGYVQSRQEQEAI 334

Query: 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
           ++    L    + NC  F   S++  A     D G + K +  + +K   G S I   G
Sbjct: 335 KLFCNMLHGHVTPNCFTF---SSVLKACASLPDFG-IGKQLHGQTIKL--GLSTINCVG 387


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/508 (39%), Positives = 304/508 (59%), Gaps = 4/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++ ++ G   + +P +A+  YR+M     + D +     ++AC     +     +H H+L
Sbjct: 177 WSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLL 236

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           RHG   D +  T+L+D+YAK G +  A +VF  M  R+  SW+A+I+G AQ   + EA+ 
Sbjct: 237 RHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALR 296

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF+ M+  G+ +P+   ++ AL AC ++G  K G  +H +I   R D N ++  A IDMY
Sbjct: 297 LFRNMQASGI-QPDSGALVSALLACSNIGFLKLGRSVHGFI-VRRFDFNCILGTAAIDMY 354

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCG L  A  +F+ I  R  L+ WN M+     HG G  AL LF++M   G++PD  ++
Sbjct: 355 SKCGSLASAQMLFNMISDR-DLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATF 413

Query: 316 LAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            + L A +H+GLV++G   F  M N   + P  KHY  +VDLL R+G ++EA D++ S+ 
Sbjct: 414 ASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMK 473

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
               + +W  LL  C     +E+ E  +  ++E+  ++ G   L+SNLYAA ++WD V +
Sbjct: 474 AEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQ 533

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VRK MK+   KK+PG S IE+ G  H F   D+SH +  EI  K+ ++  ++++ GY   
Sbjct: 534 VRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPR 593

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T  V HD+ EE KE  L YHSE+LA+AFGL++T   T + + KNLR+C DCHD IK ISK
Sbjct: 594 TEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISK 653

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +REI+VRD  RFH FKDG CSC+DYW
Sbjct: 654 IADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 170/334 (50%), Gaps = 21/334 (6%)

Query: 85  HSSK--PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
           HS +  P +A+  +R  L  + R D+ T + AL ACAR+  L     +       G+  D
Sbjct: 84  HSRRGSPASALRVFRA-LPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             + ++LL +YA+ G +  A KVF  M  RD  +W+ ++AG        +A+ +++RM+ 
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           +GV K +EV ++G + AC      + G  +H ++    + M+VV   +++DMYAK GLLD
Sbjct: 203 DGV-KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VF  +   ++ V+W+ M+  FA +G    AL LF  M  +G++PD  + ++AL AC
Sbjct: 262 VACRVF-GLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 323 NHAGLVDDG-------VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           ++ G +  G       VR F+     G         + +D+  + G L  A  +   +S 
Sbjct: 321 SNIGFLKLGRSVHGFIVRRFDFNCILGT--------AAIDMYSKCGSLASAQMLFNMIS- 371

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
             D++LW  ++  C  +G  + A    +++ E G
Sbjct: 372 DRDLILWNAMIACCGAHGRGQDALTLFQEMNETG 405



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 12/252 (4%)

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           R LA    L I S    H  +      ++L   YA+ G++ +A+            +   
Sbjct: 25  RTLARLHALLIVSSSASHTLI------SSLAAAYARAGDLAAAESTLTATAASSSIAAWN 78

Query: 180 LIAGL--AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            I      +G+ AS A+ +F+   +    +P+  T   AL+AC  LG  + G+ + +   
Sbjct: 79  AIIAAHSRRGSPAS-ALRVFR--ALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAF 135

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +     +V VC++++ +YA+ G +  A +VF  +  R+  VTW+TMV  F   G    A+
Sbjct: 136 DAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMP-RRDRVTWSTMVAGFVSAGQPLDAI 194

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           +++ +M   GVK D+V  +  + AC  A  V  G  +   +   G++ ++    S+VD+ 
Sbjct: 195 QMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMY 254

Query: 358 GRAGRLQEACDI 369
            + G L  AC +
Sbjct: 255 AKNGLLDVACRV 266


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/572 (36%), Positives = 328/572 (57%), Gaps = 38/572 (6%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSH 104
           +I  Y  S   ELA +   F ++       +N+++ G +       A++ + +ML   S 
Sbjct: 214 LISLYMQSGQFELAASQ--FEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSL 271

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLR-----HGFLADALLG------------- 146
           + D  T +  L ACA +  L    QIH+++LR      G + +AL+              
Sbjct: 272 KPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARL 331

Query: 147 ---------------TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
                          T+LLD Y K+G +  A+++F+++  RD+ +W A+I G  Q  L +
Sbjct: 332 IVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWN 391

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           +A++LF+ M  EG  +PN  T+   L+    L   + G +IH    +        V NA+
Sbjct: 392 DALELFRLMVNEGP-EPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNAL 450

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           I MYAK G ++ A  VFD    +K +V+W +M+MA A HG G  A+ LFE+M   G+KPD
Sbjct: 451 IAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPD 510

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
            ++Y+  L AC H GLV+ G + +N M     ++P + HY  ++DL GRAG LQEA   +
Sbjct: 511 HITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFI 570

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
           +S+ +  D + W +LL +C+++ + ++A++A+ +L+ +   N G ++ L+N+Y+A  +W+
Sbjct: 571 ESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWE 630

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
           +  + RK MK+R V+K  G S+I +   +H F   D  H +  EIY+ + EI  +IK+ G
Sbjct: 631 NAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMG 690

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
           +   T  VLHD+ EE KE  L YHSEKLA+AFGL++T E T++++ KNLR+C DCH  IK
Sbjct: 691 FIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIK 750

Query: 551 LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            ISK+  REIIVRD  RFH FKDG+CSC+DYW
Sbjct: 751 FISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 180/445 (40%), Gaps = 98/445 (22%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSK--------------- 88
           + ++ FYA +    L +AH +F ++   ST  +N ++ G A                   
Sbjct: 49  NNLMTFYAKT--GSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCD 106

Query: 89  PT----------------NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS 132
           P                 NA+  + +M+         T S  L +CA    L    +IHS
Sbjct: 107 PVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHS 166

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL------------ 180
            V++ G  +   + T+LL++YAK G+ V AK VFD M V++I++WNAL            
Sbjct: 167 FVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFEL 226

Query: 181 -------------------IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
                              I+G +Q     EA+ +F +M  E   KP+  T+   L+AC 
Sbjct: 227 AASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACA 286

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG---------------------- 259
           +L     G +IH YI     + +  V NA+I MYAK G                      
Sbjct: 287 NLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAF 346

Query: 260 --LLD---------KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
             LLD          A E+F+ ++ R  +V W  M++ +  +G    ALELF  M   G 
Sbjct: 347 TSLLDGYTKLGNVKPAREIFNKLRDR-DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGP 405

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           +P+  +  A L   +   +++ G ++  S    G         +++ +  + G +  A  
Sbjct: 406 EPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKR 465

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYG 393
           +    +   ++V W +++ A   +G
Sbjct: 466 VFDLPNGKKEIVSWTSMIMALAQHG 490



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 143/301 (47%), Gaps = 27/301 (8%)

Query: 19  HIHIKQLQAHLTTTGQFQSKLFPVRSK---------IIEFYALSPLNELAY--------- 60
            IH   L+A   T+G   + L  + +K         I+E    S LN +A+         
Sbjct: 296 QIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 61  ------AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
                 A  +F ++       + A++ G   +    +A+  +R M+      ++ T +  
Sbjct: 356 LGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAM 415

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD-EMGVRD 173
           L   + +  L    QIH+  ++ G  +   +   L+ +YAK G I  AK+VFD   G ++
Sbjct: 416 LSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKE 475

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           I SW ++I  LAQ  L  EA++LF+RM   G+ KP+ +T +G L+AC H+G  ++G K +
Sbjct: 476 IVSWTSMIMALAQHGLGKEAINLFERMLSVGM-KPDHITYVGVLSACTHVGLVEQGRKYY 534

Query: 234 EYIRE-ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
             + E   ++  +     +ID+Y + GLL +A+   +++      + W +++ +  +H +
Sbjct: 535 NMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKN 594

Query: 293 G 293
            
Sbjct: 595 A 595



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 150/368 (40%), Gaps = 48/368 (13%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-- 172
           L+   R+   F    +H  +++ G      L   L+  YAK G +  A  VFDEM ++  
Sbjct: 17  LQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKST 76

Query: 173 -----------------------------DIASWNALIAGLAQGNLASEAVDLFKRMKME 203
                                        D  SW A+I G  Q  L   A+ +F +M  E
Sbjct: 77  FSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
            V  P++ TV   L++C        G KIH ++ +  L   V V  ++++MYAKCG    
Sbjct: 137 RV-PPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI 195

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A  VFD +   K++ TWN ++  +   G    A   FE+M       D VS+ + +   +
Sbjct: 196 AKVVFDRMTV-KNISTWNALISLYMQSGQFELAASQFEKMPDR----DIVSWNSMISGYS 250

Query: 324 HAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDI---VKSVSMGTDM 379
             G   + + +F+ M N   +KP+     S++       +L     I   +      T  
Sbjct: 251 QQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSG 310

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK-- 437
            +   L+      G VE+A    R +VE    +  + +  ++L   Y +  +V   R+  
Sbjct: 311 AVGNALISMYAKSGGVEIA----RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIF 366

Query: 438 -AMKNRDV 444
             +++RDV
Sbjct: 367 NKLRDRDV 374


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/524 (37%), Positives = 318/524 (60%), Gaps = 5/524 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++   +   +NA++ GL         +  + +M       D       L+ CA 
Sbjct: 137 ARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAG 196

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL    Q+H +V + GF  + ++ ++L  +Y K G +   +++   M  +++ +WN L
Sbjct: 197 LRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTL 256

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IAG AQ     E +D +  MKM G F+P+++T +  +++C  L    +G +IH  + +  
Sbjct: 257 IAGRAQNGYPEEVLDQYNMMKMAG-FRPDKITFVSVISSCSELATLGQGQQIHAEVIKAG 315

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS-LVTWNTMVMAFAVHGDGPRALEL 299
             + V V +++I MY++CG L+ + +VF  ++C    +V W++M+ A+  HG G  A++L
Sbjct: 316 ASLIVSVISSLISMYSRCGCLEYSLKVF--LECENGDVVCWSSMIAAYGFHGRGVEAIDL 373

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLG 358
           F QM +  ++ +DV++L+ L AC+H GL + G++ F+ M    GVKP ++HY  +VDLLG
Sbjct: 374 FNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLG 433

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           R G ++EA  +++S+ +  D++ W+TLL AC+++   EMA   S ++  +   +   +VL
Sbjct: 434 RYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVL 493

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN++A+ +RWDDV  VRKAM++R +KK PG S++EV   IH+F   DKSH K  EI   
Sbjct: 494 LSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASY 553

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L E+  ++K+ GY      VLHD+  E+KE +L +HSEKLA+AF L+ T   T I+V KN
Sbjct: 554 LRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKN 613

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH  IK IS++ NREIIVRD  RFH FK+G CSC DYW
Sbjct: 614 LRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 164/345 (47%), Gaps = 37/345 (10%)

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI------------ 159
           S  L++C    +L    Q+HS ++  G  +D  +   LL++Y+K G++            
Sbjct: 56  SHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPR 115

Query: 160 -------------------VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
                              V+A+K+FDEM  R++A+WNA++AGL Q     E + LF RM
Sbjct: 116 KNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRM 175

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
              G F P+E  +   L  C  L A   G ++H Y+R+   + N+VV +++  MY KCG 
Sbjct: 176 NELG-FLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGS 234

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L +   +   +   +++V WNT++   A +G     L+ +  M  AG +PD +++++ + 
Sbjct: 235 LGEGERLIRAMP-SQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVIS 293

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           +C+    +  G ++   +   G    +    S++ +  R G L+ +  +      G D+V
Sbjct: 294 SCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENG-DVV 352

Query: 381 LWQTLLGACQLYG-DVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
            W +++ A   +G  VE  ++ ++  +E       D   LS LYA
Sbjct: 353 CWSSMIAAYGFHGRGVEAIDLFNQ--MEQEKLEANDVTFLSLLYA 395


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/542 (38%), Positives = 319/542 (58%), Gaps = 5/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  Y  +    +  A  +F  +       +  ++ G A +    +A   +  M  
Sbjct: 296 VATSLIRMY--TTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQE 353

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              + D +T    + ACA    L    +IHS V   GF  D L+ T L+ +YAK G I  
Sbjct: 354 EGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKD 413

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A++VFD M  RD+ SW+A+I    +    +EA + F  MK   + +P+ VT +  L ACG
Sbjct: 414 ARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNI-EPDGVTYINLLNACG 472

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
           HLGA   G +I+    +  L  +V + NA+I M AK G +++A  +FD +  R+ ++TWN
Sbjct: 473 HLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTM-VRRDVITWN 531

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            M+  +++HG+   AL LF++M +   +P+ V+++  L AC+ AG VD+G R F  +   
Sbjct: 532 AMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEG 591

Query: 342 -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            G+ P +K YG +VDLLGRAG L EA  ++KS+ +     +W +LL AC+++G++++AE 
Sbjct: 592 RGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAER 651

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A+ + + +   +   +V LS++YAA   W++V +VRK M++R ++K  G ++IEV G +H
Sbjct: 652 AAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVH 711

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F   D+SH    EIY +L  +M  IK  GY   T  VLHD+GE++KE A+ YHSEKLA+
Sbjct: 712 TFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAI 771

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           A+G++S    T I+++KNLR+C DCH   K ISKV  REII RD  RFH FKDG CSC D
Sbjct: 772 AYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGD 831

Query: 581 YW 582
           YW
Sbjct: 832 YW 833



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 195/384 (50%), Gaps = 13/384 (3%)

Query: 7   LLQKCSS--NGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           L Q+C+   + A+     KQ++ H+   G+ Q  ++ + + +I+ Y++     +  A  +
Sbjct: 63  LFQRCTELRDAALG----KQVRDHIIQGGR-QLNIYELNT-LIKLYSIC--GNVTEARQI 114

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F  +   +   +NA++ G A       A   +RQM+        +T    L AC+    L
Sbjct: 115 FDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGL 174

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               ++H+ V+  GF++D  +GT L+ +Y K G +  A++VFD + +RD++++N ++ G 
Sbjct: 175 NWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGY 234

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           A+     +A +LF RM+  G+ KPN+++ L  L  C    A   G  +H       L  +
Sbjct: 235 AKSGDWEKAFELFYRMQQVGL-KPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDD 293

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + V  ++I MY  CG ++ A  VFDN+K R  +V+W  M+  +A +G+   A  LF  M 
Sbjct: 294 IRVATSLIRMYTTCGSIEGARRVFDNMKVR-DVVSWTVMIEGYAENGNIEDAFGLFATMQ 352

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
             G++PD ++Y+  + AC  +  ++    + + +   G   ++    ++V +  + G ++
Sbjct: 353 EEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIK 412

Query: 365 EACDIVKSVSMGTDMVLWQTLLGA 388
           +A  +  ++    D+V W  ++GA
Sbjct: 413 DARQVFDAMPR-RDVVSWSAMIGA 435



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 175/374 (46%), Gaps = 41/374 (10%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           Q+  H+++ G   +     TL+ +Y+  G +  A+++FD +  + + +WNALIAG AQ  
Sbjct: 78  QVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVG 137

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
              EA  LF++M  EG+ +P+ +T L  L AC        G ++H  +       +  + 
Sbjct: 138 HVKEAFALFRQMVDEGL-EPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIG 196

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
            A++ MY K G +D A +VFD +  R  + T+N MV  +A  GD  +A ELF +M + G+
Sbjct: 197 TALVSMYVKGGSMDDARQVFDGLHIR-DVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGL 255

Query: 309 KPDDVSYLAAL----------------CACNHAGLVDDGVRLFNSM----ANCG------ 342
           KP+ +S+L+ L                  C +AGLVDD +R+  S+      CG      
Sbjct: 256 KPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDD-IRVATSLIRMYTTCGSIEGAR 314

Query: 343 -VKPNMK-----HYGSVVDLLGRAGRLQEACDIVKSVS---MGTDMVLWQTLLGACQLYG 393
            V  NMK      +  +++     G +++A  +  ++    +  D + +  ++ AC +  
Sbjct: 315 RVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISA 374

Query: 394 DVEMA-EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF-- 450
           ++  A EI S+  +     +      L ++YA      D  +V  AM  RDV        
Sbjct: 375 NLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIG 434

Query: 451 SYIEVGGVIHKFFT 464
           +Y+E G     F T
Sbjct: 435 AYVENGYGTEAFET 448


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/508 (39%), Positives = 304/508 (59%), Gaps = 4/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++ ++ G   + +P +A+  YR+M     + D +     ++AC     +     +H H+L
Sbjct: 177 WSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLL 236

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           RHG   D +  T+L+D+YAK G +  A +VF  M  R+  SW+A+I+G AQ   + EA+ 
Sbjct: 237 RHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALR 296

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF+ M+  G+ +P+   ++ AL AC ++G  K G  +H +I   R D N ++  A IDMY
Sbjct: 297 LFRNMQASGI-QPDSGALVSALLACSNIGFLKLGRSVHGFI-VRRFDFNCILGTAAIDMY 354

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCG L  A  +F+ I  R  L+ WN M+     HG G  AL LF++M   G++PD  ++
Sbjct: 355 SKCGSLASAQMLFNMISDR-DLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATF 413

Query: 316 LAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            + L A +H+GLV++G   F  M N   + P  KHY  +VDLL R+G ++EA D++ S+ 
Sbjct: 414 ASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMK 473

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
               + +W  LL  C     +E+ E  +  ++E+  ++ G   L+SNLYAA ++WD V +
Sbjct: 474 AEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQ 533

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VRK MK+   KK+PG S IE+ G  H F   D+SH +  EI  K+ ++  ++++ GY   
Sbjct: 534 VRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPR 593

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T  V HD+ EE KE  L YHSE+LA+AFGL++T   T + + KNLR+C DCHD IK ISK
Sbjct: 594 TEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISK 653

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +REI+VRD  RFH FKDG CSC+DYW
Sbjct: 654 IADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 172/334 (51%), Gaps = 21/334 (6%)

Query: 85  HSSK--PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
           HS +  P +A+  +R  L  + R D+ T + AL ACAR+  L     +       G+  D
Sbjct: 84  HSRRGSPASALRVFRA-LPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             + ++LL +YA+ G +  A KVF  M  RD  +W+ ++AG        +A+ +++RM+ 
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           +GV K +EV ++G + AC      + G  +H ++    + M+VV   +++DMYAK GLLD
Sbjct: 203 DGV-KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VF  +   ++ V+W+ M+  FA +G    AL LF  M  +G++PD  + ++AL AC
Sbjct: 262 VACRVF-GLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 323 NHAGLVDDG-------VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           ++ G +  G       VR F+   NC +        + +D+  + G L  A  +   +S 
Sbjct: 321 SNIGFLKLGRSVHGFIVRRFD--FNCILGT------AAIDMYSKCGSLASAQMLFNMIS- 371

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
             D++LW  ++  C  +G  + A    +++ E G
Sbjct: 372 DRDLILWNAMIACCGAHGRGQDALTLFQEMNETG 405



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 12/252 (4%)

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           R LA    L I S    H  +      ++L   YA+ G++ +A+            +   
Sbjct: 25  RTLARLHALLIVSSSASHTLI------SSLAAAYARAGDLAAAESTLTATAASSSIAAWN 78

Query: 180 LIAGL--AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            I      +G+ AS A+ +F+   +    +P+  T   AL+AC  LG  + G+ + +   
Sbjct: 79  AIIAAHSRRGSPAS-ALRVFR--ALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAF 135

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +     +V VC++++ +YA+ G +  A +VF  +  R+  VTW+TMV  F   G    A+
Sbjct: 136 DAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMP-RRDRVTWSTMVAGFVSAGQPLDAI 194

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           +++ +M   GVK D+V  +  + AC  A  V  G  +   +   G++ ++    S+VD+ 
Sbjct: 195 QMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMY 254

Query: 358 GRAGRLQEACDI 369
            + G L  AC +
Sbjct: 255 AKNGLLDVACRV 266


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/555 (38%), Positives = 310/555 (55%), Gaps = 38/555 (6%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A ++F +++      +NA++ G   S    +A   +R+M+      D  T +  L ACA 
Sbjct: 251 ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACAN 310

Query: 121 VLALFETLQIHSHVLR--HGFLADALL--GTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
                    +H  ++R    F+ +A L     L+ +Y+K G+IV AK++FD M ++D+ S
Sbjct: 311 AGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVS 370

Query: 177 WNA-------------------------------LIAGLAQGNLASEAVDLFKRMKMEGV 205
           WN                                +++G   G L+ +A+ LF +M+ E V
Sbjct: 371 WNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDV 430

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
            KP + T  GA+AACG LGA K G ++H ++ +   + +    NA++ MYAKCG ++ A 
Sbjct: 431 -KPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDAR 489

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
            VF  +    S V+WN M+ A   HG G  ALELF+QM   G+ PD +S+L  L ACNHA
Sbjct: 490 LVFLVMPNLDS-VSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHA 548

Query: 326 GLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
           GLVD+G   F SM  + G+ P   HY  ++DLLGR+GR+ EA D++K++       +W+ 
Sbjct: 549 GLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEA 608

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444
           +L  C+  GD+E    A+ +L  M   + G ++LLSN Y+A  RW D  RVRK M++R V
Sbjct: 609 ILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGV 668

Query: 445 KKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
           KK PG S+IEVG  IH F   D  H + +E+Y+ L+ I  ++++ GY   T  VLHD+  
Sbjct: 669 KKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEP 728

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
            EKE  L  HSEKLAV FGL+      ++ V KNLRIC DCH  +  +SK   REI+VRD
Sbjct: 729 HEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRD 788

Query: 565 RVRFHRFKDGACSCK 579
             RFH FKDG CSC+
Sbjct: 789 VRRFHHFKDGECSCE 803



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 166/406 (40%), Gaps = 78/406 (19%)

Query: 63  ALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKAC 118
           A F     P+  D    NA++   A +S    AV  +  +L  GS R D  + +  + A 
Sbjct: 112 AAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAV 171

Query: 119 ARV--LALFETLQIHSHVLRHGFLA----------------------------------D 142
            ++  LA     Q+H  VL+ G  A                                  D
Sbjct: 172 GQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKD 231

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
            L  TT++  Y + G++ +A+ VF+E+  +    WNA+I+G  Q  + ++A +LF+RM  
Sbjct: 232 DLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVS 291

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIH--------EYIREERLDMN---------- 244
           E V   +E T    L+AC + G +  G  +H         ++ E  L +N          
Sbjct: 292 EKV-PLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKG 350

Query: 245 -----------------VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
                            VV  N ++  Y   G LDKA EVF  +  +  L +W  MV  +
Sbjct: 351 GKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL-SWMVMVSGY 409

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM 347
              G    AL+LF QM    VKP D +Y  A+ AC   G +  G +L   +  CG + + 
Sbjct: 410 VHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASN 469

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
               +++ +  + G + +A  +V  V    D V W  ++ A   +G
Sbjct: 470 SAGNALLTMYAKCGAVNDA-RLVFLVMPNLDSVSWNAMISALGQHG 514


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/555 (38%), Positives = 336/555 (60%), Gaps = 12/555 (2%)

Query: 37  SKLFP---VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAV 93
           S L P   V + +I  Y       L  A A F ++   ++  +NA++       +   A+
Sbjct: 60  SGLLPNVVVGTAVISMYG--KCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREAL 117

Query: 94  LWYRQMLRGSH--RSDALTCSFALKACARVLALFETLQIHSHVLRHG--FLADALLGTTL 149
             +R+M   S   R D  + S A++AC+ +  L +  +IH  + R G     D ++GT L
Sbjct: 118 ELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTAL 177

Query: 150 LDVYAKVGEIVSAKKVFDEM-GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L++Y+K G++  A+KVFD +    D   WNA+IA  AQ     +A+DL++ M       P
Sbjct: 178 LNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAP 237

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
            + T +  +  C  L A K+G  IH  +R    D N++V NA++ MY KCG LD+A +VF
Sbjct: 238 KQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVF 297

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
            ++K  K  ++WNT++ ++A HG   +AL L+++M   GVKP +V+++  L AC+H GLV
Sbjct: 298 HSMKL-KDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLV 356

Query: 329 DDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
            DG+  F  M +   +KP++ H+G ++DLLGR GRL EA  ++KS+ +  + V W +LLG
Sbjct: 357 ADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLG 416

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           AC+ +GD++    A+ ++V+      G +VLLSN+YAA  RW DV ++RK M  R VKK 
Sbjct: 417 ACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKS 476

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
           PG S+IE+G V+H+F + D+SH +  EIY +L +++ ++K  GY   TS V HD+ EEEK
Sbjct: 477 PGKSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEK 536

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           E+ L  HSEKLA+ +G +     + +++ KNLR+C DCH   K +S++  R+I+VRD  R
Sbjct: 537 EDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAAR 596

Query: 568 FHRFKDGACSCKDYW 582
           FH F++G+CSC+DYW
Sbjct: 597 FHLFENGSCSCRDYW 611



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 172/325 (52%), Gaps = 7/325 (2%)

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA--LFETLQIHSHVLRH 137
           +   +H+   + A++++R+M +   R D +T S  L A A++ A  + +  +IH +    
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           G L + ++GT ++ +Y K G +  A+  F+E+  ++  +WNA++          EA++LF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 198 KRM-KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE--RLDMNVVVCNAVIDM 254
           + M +     +P++ +   A+ AC +L   ++G +IHE +R E   L  +VVV  A+++M
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDV 313
           Y+KCG L++A +VFD+I+     V WN M+ A+A HG G +AL+L+  M     + P   
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 240

Query: 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
           +++  +  C     +  G  +   +       N+    ++V + G+ G L EA D+  S+
Sbjct: 241 TFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSM 300

Query: 374 SMGTDMVLWQTLLGACQLYGDVEMA 398
            +  D + W T++ +   +G  + A
Sbjct: 301 KL-KDEISWNTIISSYAYHGHSDQA 324


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/527 (38%), Positives = 315/527 (59%), Gaps = 4/527 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L+YAH +F  I + + N +NA++ G + SS P  ++  Y QM       D  T    L A
Sbjct: 444 LSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSA 503

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C+++ +L    ++H  ++R+    D+ +  +LL +Y   GE+ +A  +FD M  + + SW
Sbjct: 504 CSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSW 563

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N ++ G  Q      A+ LF++M + GV +P E++++    AC  L + + G + H Y  
Sbjct: 564 NTMVNGYLQNGFPERALSLFRQMVLYGV-QPCEISMMSVFGACSLLPSLRLGREAHGYAL 622

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  L+ N  +  +VIDMYAK G + ++F+VF+ +K  +S+ +WN MVM + +HG    A+
Sbjct: 623 KCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLK-ERSVASWNAMVMGYGIHGRAKEAI 681

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDL 356
           +LFE+M R G  PD++++L  L ACNH+GLV +G+   + M    G+ P +KHY  V+D+
Sbjct: 682 KLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDM 741

Query: 357 LGRAGRLQEACDI-VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           L RAG+L EA  I  + +S    + +W  LL +C+++ ++EM E  + KL         +
Sbjct: 742 LVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPEN 801

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +VLLSNLYA   +WD+V +VR+ MK   ++K  G S+IE+ G +  F   + S   + EI
Sbjct: 802 YVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEI 861

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
                 +  +I + GY   TS V HD+ EEEK   L  HSEKLA+ +GLI TSE T+++V
Sbjct: 862 KSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRV 921

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +KNLRIC DCH+  KLISKV  REI+VRD  RFH FK+G CSC DYW
Sbjct: 922 YKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 153/309 (49%), Gaps = 5/309 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKAC 118
           A  +F+  N  +   +N ++ G + +          RQML G    R+D +T   A+  C
Sbjct: 343 AQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402

Query: 119 ARVLALFETLQIHSHVLRHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
                L    ++H + L+  F+  + L+    +  YAK G +  A +VF  +  + + SW
Sbjct: 403 FEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSW 462

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NALI G +Q +    ++D + +MK  G+  P+  TV   L+AC  + + K G ++H  I 
Sbjct: 463 NALIGGYSQSSDPRLSLDAYFQMKSSGLL-PDLFTVCSLLSACSQIKSLKLGKEVHGLII 521

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
             RL+ +  V  +++ +Y  CG L  A  +FD ++  K+LV+WNTMV  +  +G   RAL
Sbjct: 522 RNRLERDSFVYISLLSLYIHCGELSTAHVLFDAME-DKTLVSWNTMVNGYLQNGFPERAL 580

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
            LF QM   GV+P ++S ++   AC+    +  G         C ++ N     SV+D+ 
Sbjct: 581 SLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMY 640

Query: 358 GRAGRLQEA 366
            + G + E+
Sbjct: 641 AKNGSVMES 649



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 135/273 (49%), Gaps = 14/273 (5%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           EL+ AH LF  +   +   +N ++ G   +  P  A+  +RQM+    +   ++      
Sbjct: 544 ELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFG 603

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC+ + +L    + H + L+     +A +  +++D+YAK G ++ + KVF+ +  R +AS
Sbjct: 604 ACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVAS 663

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WNA++ G      A EA+ LF+ M+  G   P+E+T LG L AC H G   EG    + +
Sbjct: 664 WNAMVMGYGIHGRAKEAIKLFEEMQRTG-HCPDELTFLGVLTACNHSGLVHEGLTYLDQM 722

Query: 237 REERLDMNVVVCN--AVIDMYAKCGLLDKAFEV-FDNIKCRKSLVTWNTMVMAFAVHGDG 293
           +     MN  + +   VIDM  + G LD+A ++  + +     +  WN ++ +  +H   
Sbjct: 723 K-TLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIH--- 778

Query: 294 PRALELFEQMG-----RAGVKPDDVSYLAALCA 321
            + LE+ E++          KP++   L+ L A
Sbjct: 779 -KNLEMGEKIAAKLFVSEPEKPENYVLLSNLYA 810



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 132/298 (44%), Gaps = 7/298 (2%)

Query: 129 QIHSHVLRHGFLA-DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
           +IH  V     L+ D +L T ++ +Y+  G    ++ VFD +  +++  WNA+I+  ++ 
Sbjct: 102 KIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRN 161

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
            L    +++F +M  E    P+  T    + AC  +   + G  +H  + + RL  +V V
Sbjct: 162 ELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFV 221

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM---- 303
            NA++  Y   G +  A  VF  I   ++LV+WN+M+  F+ +G       L  QM    
Sbjct: 222 SNALVSFYGTNGSVSDALRVF-KIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKD 280

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
                 PD  +    L  C     +  G  +        +   +    +++D+  + G +
Sbjct: 281 DEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCI 340

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            +A  I K ++   ++V W T++G     GD+       R+++  G +   D V + N
Sbjct: 341 NDAQVIFK-LNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILN 397


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/558 (37%), Positives = 328/558 (58%), Gaps = 9/558 (1%)

Query: 29  LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSK 88
           L   G  +  ++ V + I+  Y      ++  A  +F ++       +N ++ G   + +
Sbjct: 149 LVVVGGLEEDVY-VGNSILSMYF--KFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGE 205

Query: 89  PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG---FLADALL 145
              A   +  M R     D  T    L AC  V+ L    +IH +V+R+G    + +  L
Sbjct: 206 ARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFL 265

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
             +++D+Y     +  A+K+F+ + V+D+ SWN+LI+G  +   A +A++LF RM + G 
Sbjct: 266 MNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGA 325

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
             P+EVTV+  LAAC  + A + G  +  Y+ +    +NVVV  A+I MYA CG L  A 
Sbjct: 326 V-PDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCAC 384

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
            VFD +   K+L     MV  F +HG G  A+ +F +M   GV PD+  + A L AC+H+
Sbjct: 385 RVFDEMP-EKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHS 443

Query: 326 GLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
           GLVD+G  +F  M  +  V+P   HY  +VDLLGRAG L EA  +++++ +  +  +W  
Sbjct: 444 GLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTA 503

Query: 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444
           LL AC+L+ +V++A I+++KL E+  +    +V LSN+YAA  RW+DV  VR  +  R +
Sbjct: 504 LLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRL 563

Query: 445 KKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
           +K P +S++E+  ++H+FF  D SH +  +IY KL ++  ++K+ GY   TS VL+D+ E
Sbjct: 564 RKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEE 623

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
           E KE  L  HSE+LA+AF LI+T   T+I++ KNLR+C DCH VIK+ISK+ NREII+RD
Sbjct: 624 EIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRD 683

Query: 565 RVRFHRFKDGACSCKDYW 582
             RFH F+DG CSC  YW
Sbjct: 684 ICRFHHFRDGLCSCGGYW 701



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 196/367 (53%), Gaps = 10/367 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            LLQ  +++ +++     QL AH+TT G  +   + + +K+   YA+     + YA  +F
Sbjct: 27  TLLQSLTNSKSLTQA--LQLHAHVTTGGTLRRNTY-LATKLAACYAVC--GHMPYAQHIF 81

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            QI   ++  +N+++RG A ++ P+ A+  Y +ML    + D  T  F LKAC  +L   
Sbjct: 82  DQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLRE 141

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              ++H+ V+  G   D  +G ++L +Y K G++ +A+ VFD M VRD+ SWN +++G  
Sbjct: 142 MGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFV 201

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI---REERLD 242
           +   A  A ++F  M+ +G F  +  T+L  L+ACG +   K G +IH Y+    E    
Sbjct: 202 KNGEARGAFEVFGDMRRDG-FVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRV 260

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            N  + N++IDMY  C  +  A ++F+ ++  K +V+WN+++  +   GD  +ALELF +
Sbjct: 261 CNGFLMNSIIDMYCNCESVSCARKLFEGLRV-KDVVSWNSLISGYEKCGDAFQALELFGR 319

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M   G  PD+V+ ++ L ACN    +  G  + + +   G   N+    +++ +    G 
Sbjct: 320 MVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGS 379

Query: 363 LQEACDI 369
           L  AC +
Sbjct: 380 LVCACRV 386



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 114/217 (52%), Gaps = 3/217 (1%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFL-ADALLGTTLLDVYAKVGEIVSAKKV 165
           D+L C   L++     +L + LQ+H+HV   G L  +  L T L   YA  G +  A+ +
Sbjct: 21  DSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHI 80

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FD++ +++   WN++I G A  N  S A+ L+ +M   G  KP+  T    L ACG L  
Sbjct: 81  FDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQ-KPDNFTYPFVLKACGDLLL 139

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            + G K+H  +    L+ +V V N+++ MY K G ++ A  VFD +  R  L +WNTM+ 
Sbjct: 140 REMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVR-DLTSWNTMMS 198

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            F  +G+   A E+F  M R G   D  + LA L AC
Sbjct: 199 GFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSAC 235


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/572 (36%), Positives = 327/572 (57%), Gaps = 38/572 (6%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSH 104
           +I  Y  S   ELA +   F ++       +N+++ G +       A+  + +ML   S 
Sbjct: 214 LISLYMQSGQFELAASQ--FEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSL 271

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLR-----HGFLADALLG------------- 146
           + D  T +  L ACA +  L    QIH+++LR      G + +AL+              
Sbjct: 272 KPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARL 331

Query: 147 ---------------TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
                          T+LLD Y K+G +  A+++F+++  RD+ +W A+I G  Q  L +
Sbjct: 332 IVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWN 391

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           +A++LF+ M  EG  +PN  T+   L+    L   + G +IH    +        V NA+
Sbjct: 392 DALELFRLMVNEGP-EPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNAL 450

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           I MYAK G ++ A  VFD    +K +V+W +M+MA A HG G  A+ LFE+M   G+KPD
Sbjct: 451 IAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPD 510

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
            ++Y+  L AC H GLV+ G + +N M     ++P + HY  ++DL GRAG LQEA   +
Sbjct: 511 HITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFI 570

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
           +S+ +  D + W +LL +C+++ + ++A++A+ +L+ +   N G ++ L+N+Y+A  +W+
Sbjct: 571 ESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWE 630

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
           +  + RK MK+R V+K  G S+I +   +H F   D  H +  EIY+ + EI  +IK+ G
Sbjct: 631 NAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMG 690

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
           +   T  VLHD+ EE KE  L YHSEKLA+AFGL++T E T++++ KNLR+C DCH  IK
Sbjct: 691 FIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIK 750

Query: 551 LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            ISK+  REIIVRD  RFH FKDG+CSC+DYW
Sbjct: 751 FISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 180/445 (40%), Gaps = 98/445 (22%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSK--------------- 88
           + ++ FYA +    L +AH +F ++   ST  +N ++ G A                   
Sbjct: 49  NNLMTFYAKT--GSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCD 106

Query: 89  PT----------------NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS 132
           P                 NA+  + +M+         T S  L +CA    L    +IHS
Sbjct: 107 PVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHS 166

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL------------ 180
            V++ G  +   + T+LL++YAK G+ V AK VFD M V++I++WNAL            
Sbjct: 167 FVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFEL 226

Query: 181 -------------------IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
                              I+G +Q     EA+ +F +M  E   KP+  T+   L+AC 
Sbjct: 227 AASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACA 286

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG---------------------- 259
           +L     G +IH YI     + +  V NA+I MYAK G                      
Sbjct: 287 NLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAF 346

Query: 260 --LLD---------KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
             LLD          A E+F+ ++ R  +V W  M++ +  +G    ALELF  M   G 
Sbjct: 347 TSLLDGYTKLGNVKPAREIFNKLRDR-DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGP 405

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           +P+  +  A L   +   +++ G ++  S    G         +++ +  + G +  A  
Sbjct: 406 EPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKR 465

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYG 393
           +    +   ++V W +++ A   +G
Sbjct: 466 VFDLPNGKKEIVSWTSMIMALAQHG 490



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 143/301 (47%), Gaps = 27/301 (8%)

Query: 19  HIHIKQLQAHLTTTGQFQSKLFPVRSK---------IIEFYALSPLNELAY--------- 60
            IH   L+A   T+G   + L  + +K         I+E    S LN +A+         
Sbjct: 296 QIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 61  ------AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
                 A  +F ++       + A++ G   +    +A+  +R M+      ++ T +  
Sbjct: 356 LGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAM 415

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD-EMGVRD 173
           L   + +  L    QIH+  ++ G  +   +   L+ +YAK G I  AK+VFD   G ++
Sbjct: 416 LSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKE 475

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           I SW ++I  LAQ  L  EA++LF+RM   G+ KP+ +T +G L+AC H+G  ++G K +
Sbjct: 476 IVSWTSMIMALAQHGLGKEAINLFERMLSVGM-KPDHITYVGVLSACTHVGLVEQGRKYY 534

Query: 234 EYIRE-ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
             + E   ++  +     +ID+Y + GLL +A+   +++      + W +++ +  +H +
Sbjct: 535 NMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKN 594

Query: 293 G 293
            
Sbjct: 595 A 595



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 150/368 (40%), Gaps = 48/368 (13%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-- 172
           L+   R+   F    +H  +++ G      L   L+  YAK G +  A  VFDEM ++  
Sbjct: 17  LQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKST 76

Query: 173 -----------------------------DIASWNALIAGLAQGNLASEAVDLFKRMKME 203
                                        D  SW A+I G  Q  L   A+ +F +M  E
Sbjct: 77  FSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
            V  P++ TV   L++C        G KIH ++ +  L   V V  ++++MYAKCG    
Sbjct: 137 RV-PPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI 195

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A  VFD +   K++ TWN ++  +   G    A   FE+M       D VS+ + +   +
Sbjct: 196 AKVVFDRMTV-KNISTWNALISLYMQSGQFELAASQFEKMPDR----DIVSWNSMISGYS 250

Query: 324 HAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDI---VKSVSMGTDM 379
             G   + + +F+ M N   +KP+     S++       +L     I   +      T  
Sbjct: 251 QQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSG 310

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK-- 437
            +   L+      G VE+A    R +VE    +  + +  ++L   Y +  +V   R+  
Sbjct: 311 AVGNALISMYAKSGGVEIA----RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIF 366

Query: 438 -AMKNRDV 444
             +++RDV
Sbjct: 367 NKLRDRDV 374


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/529 (38%), Positives = 313/529 (59%), Gaps = 24/529 (4%)

Query: 76  FNAVLRGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHV 134
           +NA++ G A +     A+ L+ R            T +  L ACAR         +H +V
Sbjct: 343 WNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYV 402

Query: 135 LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG-LAQGNLASEA 193
           L+ G   +  +   L+D+YA++G++ +A+ +F  +  RD+ SWN LI G + QG++  +A
Sbjct: 403 LKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHI-HDA 461

Query: 194 VDLFKRMKMEGVFK-----------------PNEVTVLGALAACGHLGAWKEGDKIHEYI 236
             L + M+ +G F                  PN VT++  L  C  L A  +G +IH Y 
Sbjct: 462 FQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYA 521

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
               LD ++ V +A++DMYAKCG L  +  VFD +  +++++TWN ++MA+ +HG G  A
Sbjct: 522 MRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLP-KRNVITWNVLIMAYGMHGLGDEA 580

Query: 297 LELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVV 354
           + LF++M  +   KP++V+++AAL AC+H+G+VD G+ LF+SM  N GV+P    +   V
Sbjct: 581 IALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAV 640

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           D+LGRAGRL EA  I+ S+  G   V  W + LGAC+L+ +V + EIA+ +L ++  +  
Sbjct: 641 DILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEA 700

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
             +VLL N+Y+A   W+    VR  M+ R V K PG S+IE+ GVIH+F   + +H +  
Sbjct: 701 SHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPEST 760

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
            ++  +D +  +++  GY   TS VLHDI E EK   L YHSEKLA+AFGL+ T    +I
Sbjct: 761 LVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATI 820

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +V KNLR+C DCH+  K IS++  REI++RD  RFH F DGACSC DYW
Sbjct: 821 RVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 141/271 (52%), Gaps = 5/271 (1%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++  L  S +   A+     M+    R D +T + AL AC+++  L    ++H++VL
Sbjct: 239 WNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVL 298

Query: 136 RHGFLA-DALLGTTLLDVYAKVGEIVSAKKVFDEM--GVRDIASWNALIAGLAQGNLASE 192
           +   LA ++ + + L+D+YA    +  A++VFD +  G R +  WNA++ G AQ  +  E
Sbjct: 299 KDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEE 358

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A++LF RM+ E    P+E T+ G L AC     +   + +H Y+ +  +  N  V NA++
Sbjct: 359 ALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALM 418

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
           D+YA+ G ++ A  +F  I+ R  +V+WNT++    V G    A +L  +M + G +  D
Sbjct: 419 DLYARLGDMEAARWIFAAIEPRD-VVSWNTLITGCVVQGHIHDAFQLVREMQQQG-RFTD 476

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
            +    +   +   +V + V L   +  C +
Sbjct: 477 ATTEDGIAGTDEEPVVPNNVTLMTLLPGCAM 507



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 169/368 (45%), Gaps = 19/368 (5%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
            +L  A ALF  + +     FN+++  L    +   A+   R ML   H   + T    L
Sbjct: 110 GDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVL 169

Query: 116 KACARVLALFETLQI----HSHVLRHGFL--ADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
            AC+    L E L++    H+  L++GFL   +      LL +YA++G +  A+ +F  +
Sbjct: 170 LACSH---LAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSV 226

Query: 170 GVRD-----IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
              D     + +WN +++ L Q     EA+++   M   GV +P+ +T   AL AC  L 
Sbjct: 227 DTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGV-RPDGITFASALPACSQLE 285

Query: 225 AWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNT 282
               G ++H Y+ ++  L  N  V +A++DMYA    +  A  VFD +    + L  WN 
Sbjct: 286 MLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNA 345

Query: 283 MVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
           MV  +A  G    ALELF +M   AGV P + +    L AC  +        +   +   
Sbjct: 346 MVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKR 405

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIA 401
           G+  N     +++DL  R G ++ A  I  ++    D+V W TL+  C + G +  A   
Sbjct: 406 GMADNPFVQNALMDLYARLGDMEAARWIFAAIE-PRDVVSWNTLITGCVVQGHIHDAFQL 464

Query: 402 SRKLVEMG 409
            R++ + G
Sbjct: 465 VREMQQQG 472



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 147/317 (46%), Gaps = 17/317 (5%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLR----HGFLADALLGTTLLDVYAKVGEIVSA 162
           D      A K+ A + +L     IH   LR    HGF     +   LL  YA+ G++ +A
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGF--TPAVANALLTAYARCGDLTAA 115

Query: 163 KKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
             +F+ M  RD  ++N+LIA L        A+D  + M +EG    +  T++  L AC H
Sbjct: 116 LALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEG-HPLSSFTLVSVLLACSH 174

Query: 223 LGA-WKEGDKIHEY-IREERLDMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS--- 276
           L    + G + H + ++   LD +     NA++ MYA+ GL+D A  +F ++    S   
Sbjct: 175 LAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGG 234

Query: 277 -LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
            +VTWNTMV      G    A+E+   M   GV+PD +++ +AL AC+   ++  G  + 
Sbjct: 235 GVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMH 294

Query: 336 N-SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG-TDMVLWQTLL-GACQLY 392
              + +  +  N     ++VD+     R+  A  +   V  G   + LW  ++ G  Q  
Sbjct: 295 AYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAG 354

Query: 393 GDVEMAEIASRKLVEMG 409
            D E  E+ +R   E G
Sbjct: 355 MDEEALELFARMEAEAG 371


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/561 (37%), Positives = 306/561 (54%), Gaps = 44/561 (7%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A + F +I+      +NA++ G   S     A   +R+M+      D  T +  L ACA 
Sbjct: 249 ARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACAN 308

Query: 121 VLALFETLQIHSHVLR--HGFLADALL--GTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
                    +H   +R    F+ +A L     L+ +Y+K G+I  A K+FD M ++D+ S
Sbjct: 309 AGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVS 368

Query: 177 WNA-------------------------------LIAGLAQGNLASEAVDLFKRMKMEGV 205
           WN                                +++G   G LA +A+ LF +M+ E V
Sbjct: 369 WNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDV 428

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA- 264
            KP + T  GA+AACG LGA K G ++H ++ +   + +    NA++ MYA+CG +  A 
Sbjct: 429 -KPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDAR 487

Query: 265 --FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
             F V  N+      V+WN M+ A   HG G  ALELF+QM   G+ PD +S+L  L AC
Sbjct: 488 LVFLVMPNVDS----VSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTAC 543

Query: 323 NHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           NHAGLVDDG + F SM  + G+ P   HY  ++DLLGRAGR+ EA D++K++       +
Sbjct: 544 NHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAI 603

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W+ +L  C++ GD+E+   A+ +L +M   + G ++LLSN Y+A  RW D  RVRK M++
Sbjct: 604 WEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRD 663

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           R VKK PG S+IEVG  +H F   D  H    E+Y  L+ +  K+++ GY   T   L D
Sbjct: 664 RGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQD 723

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           +   EKE  L  HSE+LAV+FGL+      ++ V KNL+IC DCH  +  +S+   REI+
Sbjct: 724 MAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIV 783

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRD  RFH FKDG CSC +YW
Sbjct: 784 VRDVRRFHHFKDGECSCGNYW 804



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 137/291 (47%), Gaps = 46/291 (15%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D L  TT++  + + G++ +A+  F+E+       WNA+I+G  Q  + +EA +LF+RM 
Sbjct: 229 DELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMV 288

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIH--------EYIREERLDMNVVVCNAVID 253
            + +  P+E T    L+AC + G +  G  +H        +++ E  L +N    NA++ 
Sbjct: 289 SKRI-PPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVN----NALVT 343

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA------------------------- 288
           +Y+K G +  A ++FD++   K +V+WNT++  +                          
Sbjct: 344 LYSKSGKIAVATKIFDSMTL-KDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMV 402

Query: 289 -----VHGD-GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
                VHG     AL+LF QM    VKP D +Y  A+ AC   G +  G +L   +  CG
Sbjct: 403 MVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCG 462

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            + +     +++ +  R G +++A  +V  V    D V W  ++ A   +G
Sbjct: 463 FEASNSAGNALLTMYARCGAVKDA-RLVFLVMPNVDSVSWNAMISALGQHG 512


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/592 (37%), Positives = 325/592 (54%), Gaps = 43/592 (7%)

Query: 30  TTTGQFQSKLFPVRSKIIEFYALSPLN----ELAYAHALFRQINAPSTNDFNAVLRGLAH 85
           T T  F+    PVRS +  + A+  LN     +  A +LF  +   S   +NA++ G   
Sbjct: 111 TATTVFER--MPVRS-VSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQ 167

Query: 86  SSKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLR-----HGF 139
           +     A+  + +ML   S   D  T +  L ACA +  +    Q+H+++LR     +  
Sbjct: 168 NGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQ 227

Query: 140 LADALLGT----------------------------TLLDVYAKVGEIVSAKKVFDEMGV 171
           + +AL+ T                             LL+ Y K+G++ SA+++F  M  
Sbjct: 228 VTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNN 287

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           RD+ +W A+I G  Q     EA+DLF+ M   G  +PN  T+   L+ C  L     G +
Sbjct: 288 RDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGP-EPNSYTLAAVLSVCASLACLDYGKQ 346

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           IH       L+ +  V NA+I MYA+ G    A  +FD +  RK  +TW +M++A A HG
Sbjct: 347 IHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 406

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHY 350
            G  A+ LFE+M RAGV+PD ++Y+  L AC+HAG V++G R ++ + N   + P M HY
Sbjct: 407 QGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHY 466

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
             +VDLL RAG   EA + ++ + +  D + W +LL AC+++ + E+AE+A+ KL+ +  
Sbjct: 467 ACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDP 526

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
           NN G +  ++N+Y+A  RW D  R+ KA K + V+K  GFS+  +   IH F   D  H 
Sbjct: 527 NNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHP 586

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           +   +Y     +  +IK  G+      VLHD+ +E KE  L  HSEKLA+AFGLIST E 
Sbjct: 587 QRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEK 646

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           T+++V KNLR+C DCH  IK ISKV +REIIVRD  RFH F+DG CSCKDYW
Sbjct: 647 TTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 147/331 (44%), Gaps = 36/331 (10%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           LA A  +F ++       +  ++ GL  + +   A+     M          T +  L +
Sbjct: 8   LADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSS 67

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD---- 173
           CA   A     ++HS V++ G  +   +  ++L++Y K G+  +A  VF+ M VR     
Sbjct: 68  CAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSW 127

Query: 174 ---------------------------IASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
                                      I SWNA+IAG  Q  L ++A+ LF RM  E   
Sbjct: 128 NAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSM 187

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            P+E T+   L+AC +LG  + G ++H YI    +  N  V NA+I  YAK G ++ A  
Sbjct: 188 APDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARR 247

Query: 267 VFD-NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
           + D +++   +++++  ++  +   GD   A E+F  M       D V++ A +      
Sbjct: 248 IMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMN----NRDVVAWTAMIVGYEQN 303

Query: 326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           G  D+ + LF SM  CG +PN     +V+ +
Sbjct: 304 GRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 334



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 141/310 (45%), Gaps = 41/310 (13%)

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
           ++AK G +  A+ VF EM  RD  SW  ++ GL +     EA+     M  +G F P + 
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADG-FTPTQF 59

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T+   L++C    A   G K+H ++ +  L   V V N+V++MY KCG  + A  VF+ +
Sbjct: 60  TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 272 KCR------------------------------KSLVTWNTMVMAFAVHGDGPRALELFE 301
             R                              +S+V+WN M+  +  +G   +AL+LF 
Sbjct: 120 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 179

Query: 302 QM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
           +M   + + PD+ +  + L AC + G V  G ++   +    +  N +   +++    ++
Sbjct: 180 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 239

Query: 361 GRLQEACDIVKSVSMGTDM--VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           G ++ A  I+   SM TD+  + +  LL      GD+E A    R++   G  N  D V 
Sbjct: 240 GSVENARRIMDQ-SMETDLNVISFTALLEGYVKIGDMESA----REM--FGVMNNRDVVA 292

Query: 419 LSNLYAAYER 428
            + +   YE+
Sbjct: 293 WTAMIVGYEQ 302


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/557 (38%), Positives = 324/557 (58%), Gaps = 35/557 (6%)

Query: 58   LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALK 116
            L  A  LF+++   ++  + A++ G   + +   A+    ++ R GS  SD+   S AL 
Sbjct: 505  LKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTS-ALS 563

Query: 117  ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            ACA +  +     IHS  ++ G   ++ +   L+ +YAK G +     VF  + V+D  S
Sbjct: 564  ACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVS 623

Query: 177  WNALIAGLAQGNLASEAVDLFKRMKMEGV------------------------------F 206
            WN+LI+GL++  +  +A  +F++M    V                               
Sbjct: 624  WNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGI 683

Query: 207  KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            KPN++TV   L+ACG+LGA K G++ H  I +   D  + V N++I MY KCG  D  F 
Sbjct: 684  KPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYED-GFC 742

Query: 267  VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
            VF+ +     L+TWN +++  A +G G  A+++FEQM   G+ PD +S+L  LCAC+HAG
Sbjct: 743  VFEEMP-EHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAG 801

Query: 327  LVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
            LVD+G   FNSM    G+ P + HY  +VDLLGRAG L EA  +++++ +  D V+W+ L
Sbjct: 802  LVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEAL 861

Query: 386  LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
            LGAC+++ +VE+ +  + +L +M       +VLLSNL+A+   WD V  +RK MK++ + 
Sbjct: 862  LGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLT 921

Query: 446  KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
            K PG S+I+V   +H F T D++H +  EIY  L E     +  GY   T+ VLHD+ EE
Sbjct: 922  KEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLHDVEEE 981

Query: 506  EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
            +K+N L YHSEKLAV FG++ST   + IQ+ KNLRIC DCH  +K +SKV  R+II+RD 
Sbjct: 982  QKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDG 1041

Query: 566  VRFHRFKDGACSCKDYW 582
             RFH F+DG+CSC DYW
Sbjct: 1042 NRFHHFRDGSCSCGDYW 1058



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 157/332 (47%), Gaps = 13/332 (3%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           ++ A  LF Q+   ++  +  ++ G  H S    A   + +M R   R D       L A
Sbjct: 311 MSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSA 370

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
              +  L     +    ++ G+  D ++G+ +L+ Y + G +  A   F+ M  R+  SW
Sbjct: 371 ITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSW 430

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
             +IA  AQ     +A+ L++R+  + V    +  ++ A A  G +   +        I 
Sbjct: 431 TTMIAAFAQCGRLDDAIQLYERVPEQTV--ATKTAMMTAYAQVGRIQKAR-------LIF 481

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +E L+ NVV  NA+I  Y + G+L +A ++F  +  + S  +W  M+  F  + +   AL
Sbjct: 482 DEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNS-ASWAAMIAGFVQNEESREAL 540

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDL 356
           EL  ++ R+G  P D S+ +AL AC + G V+ G R+ +S+A   G + N      ++ +
Sbjct: 541 ELLIELHRSGSVPSDSSFTSALSACANIGDVEIG-RVIHSLAIKTGCQFNSYVMNGLISM 599

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
             + G +++   + +++ +  D V W +L+  
Sbjct: 600 YAKCGNVEDGSHVFRTIRV-KDTVSWNSLISG 630



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 115/255 (45%), Gaps = 19/255 (7%)

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
           T +    ++G +  A++VF+EM  RD+ SWN++I G +Q     EA     R+  +    
Sbjct: 176 TRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEA-----RLLFDAFVG 230

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
            N  T    L      G  +E  ++ E + E     NVV  NA+I  Y + G L  A ++
Sbjct: 231 KNIRTWTILLTGYAKEGRIEEAREVFESMTER----NVVSWNAMISGYVQNGDLKNARKL 286

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           FD +   K++ +WN++V  +        A ELF+QM     + + VS++  +    H   
Sbjct: 287 FDEMP-EKNVASWNSVVTGYCHCYRMSEARELFDQMP----ERNSVSWMVMISGYVHISD 341

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT----DMVLWQ 383
             +   +F  M     +P+   +  V+  +     L E    ++ +++ T    D+V+  
Sbjct: 342 YWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDL-ELIGSLRPIAIKTGYEGDVVVGS 400

Query: 384 TLLGACQLYGDVEMA 398
            +L A    G +++A
Sbjct: 401 AILNAYTRNGSLDLA 415



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 140/317 (44%), Gaps = 33/317 (10%)

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
           + + ++    C+  ++   R+  + E  ++ + +++     D +   ++++ Y++ G++ 
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQR----DVVSWNSMINGYSQNGKVD 219

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
            A+ +FD    ++I +W  L+ G A+     EA ++F+ M    V   N +     ++  
Sbjct: 220 EARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAM-----ISGY 274

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
              G  K   K+ + + E+    NV   N+V+  Y  C  + +A E+FD +  R S V+W
Sbjct: 275 VQNGDLKNARKLFDEMPEK----NVASWNSVVTGYCHCYRMSEARELFDQMPERNS-VSW 329

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
             M+  +    D   A ++F +M R   +PD   ++  L A    GL  D + L  S+  
Sbjct: 330 MVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAI--TGL--DDLELIGSLRP 385

Query: 341 CGVKPNMKH---YGS-VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG--------- 387
             +K   +     GS +++   R G L  A    +++    +   W T++          
Sbjct: 386 IAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYS-WTTMIAAFAQCGRLD 444

Query: 388 -ACQLYGDVEMAEIASR 403
            A QLY  V    +A++
Sbjct: 445 DAIQLYERVPEQTVATK 461


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/592 (37%), Positives = 325/592 (54%), Gaps = 43/592 (7%)

Query: 30  TTTGQFQSKLFPVRSKIIEFYALSPLN----ELAYAHALFRQINAPSTNDFNAVLRGLAH 85
           T T  F+    PVRS +  + A+  LN     +  A +LF  +   S   +NA++ G   
Sbjct: 217 TATTVFER--MPVRS-VSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQ 273

Query: 86  SSKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLR-----HGF 139
           +     A+  + +ML   S   D  T +  L ACA +  +    Q+H+++LR     +  
Sbjct: 274 NGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQ 333

Query: 140 LADALLGT----------------------------TLLDVYAKVGEIVSAKKVFDEMGV 171
           + +AL+ T                             LL+ Y K+G++ SA+++F  M  
Sbjct: 334 VTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNN 393

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           RD+ +W A+I G  Q     EA+DLF+ M   G  +PN  T+   L+ C  L     G +
Sbjct: 394 RDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGP-EPNSYTLAAVLSVCASLACLDYGKQ 452

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           IH       L+ +  V NA+I MYA+ G    A  +FD +  RK  +TW +M++A A HG
Sbjct: 453 IHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHY 350
            G  A+ LFE+M RAGV+PD ++Y+  L AC+HAG V++G R ++ + N   + P M HY
Sbjct: 513 QGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHY 572

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
             +VDLL RAG   EA + ++ + +  D + W +LL AC+++ + E+AE+A+ KL+ +  
Sbjct: 573 ACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDP 632

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
           NN G +  ++N+Y+A  RW D  R+ KA K + V+K  GFS+  +   IH F   D  H 
Sbjct: 633 NNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHP 692

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           +   +Y     +  +IK  G+      VLHD+ +E KE  L  HSEKLA+AFGLIST E 
Sbjct: 693 QRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEK 752

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           T+++V KNLR+C DCH  IK ISKV +REIIVRD  RFH F+DG CSCKDYW
Sbjct: 753 TTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 147/331 (44%), Gaps = 36/331 (10%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           LA A  +F ++       +  ++ GL  + +   A+     M          T +  L +
Sbjct: 114 LADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSS 173

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD---- 173
           CA   A     ++HS V++ G  +   +  ++L++Y K G+  +A  VF+ M VR     
Sbjct: 174 CAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSW 233

Query: 174 ---------------------------IASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
                                      I SWNA+IAG  Q  L ++A+ LF RM  E   
Sbjct: 234 NAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSM 293

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            P+E T+   L+AC +LG  + G ++H YI    +  N  V NA+I  YAK G ++ A  
Sbjct: 294 APDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARR 353

Query: 267 VFD-NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
           + D +++   +++++  ++  +   GD   A E+F  M       D V++ A +      
Sbjct: 354 IMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMN----NRDVVAWTAMIVGYEQN 409

Query: 326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           G  D+ + LF SM  CG +PN     +V+ +
Sbjct: 410 GRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 440


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 322/559 (57%), Gaps = 38/559 (6%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVL------------RGLAHSSKPTNAVLWYRQMLRG 102
           L  LA A  LF +I  P    +N +L            R L  +S P   V+ +  M+ G
Sbjct: 111 LGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRL-FASMPVRDVVSWNTMVSG 169

Query: 103 SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL------------------ADAL 144
             +S A+      +A A  LA+     +  + +  GF                    DA+
Sbjct: 170 LSKSGAVE-----EAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAV 224

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           L T ++  Y  +G +V A + F+ M VR++ SWNA++AG  + + A +A+ LF+ M  E 
Sbjct: 225 LWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREA 284

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
             +PN  T+   L  C +L A   G +IH++  +  L  N+ V  +++ MY KCG L  A
Sbjct: 285 NVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSA 344

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
            ++F  +  R  +V WN M+  +A HGDG  A+ LFE+M   GV+P+ ++++A L AC H
Sbjct: 345 CKLFGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIH 403

Query: 325 AGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
            GL D G+R F  M    G++P + HY  +VDLL RAG+L+ A D+++S+        + 
Sbjct: 404 TGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYG 463

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443
           TLL AC++Y ++E AE+A+ KL+E    + G +V L+N+YA   +WDDV RVR+ MK+  
Sbjct: 464 TLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNA 523

Query: 444 VKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIG 503
           V K PG+S+IE+ GV+H+F ++D+ H +   I+EKL ++  ++K  GY      VLHD+ 
Sbjct: 524 VVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVD 583

Query: 504 EEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
           E  K   L  HSEKLA++FGLIST+   ++++FKNLR+C DCH+  K+ISK+ +REII+R
Sbjct: 584 ETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILR 643

Query: 564 DRVRFHRFKDGACSCKDYW 582
           D  RFH F+ G CSC DYW
Sbjct: 644 DTTRFHHFRGGHCSCGDYW 662



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 114/279 (40%), Gaps = 43/279 (15%)

Query: 149 LLDVYAK-VGEIVSAKKVFD-------------------------------EMGVRDIAS 176
           LL  YA+ +G +  A+ +FD                                M VRD+ S
Sbjct: 103 LLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVS 162

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN +++GL++     EA  +F  M +      N +    +  AC      ++     E+ 
Sbjct: 163 WNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMV---SGFACS-----RDMSAAEEWF 214

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           R      + V+  A++  Y   G + KA E F+ +  R +LV+WN +V  +  +     A
Sbjct: 215 RNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVR-NLVSWNAVVAGYVKNSHADDA 273

Query: 297 LELFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           L LF  M R A V+P+  +  + L  C++   +  G ++        +  N+    S+V 
Sbjct: 274 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVS 333

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           +  + G L  AC +   +    D+V W  ++     +GD
Sbjct: 334 MYCKCGDLSSACKLFGEMHT-RDVVAWNAMISGYAQHGD 371


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/567 (36%), Positives = 336/567 (59%), Gaps = 43/567 (7%)

Query: 58  LAYAHALF--RQINAPSTNDFNAVLRGLAHS-SKPT--NAVLWYRQMLRGSHRSDALTCS 112
           +AYA+ +F  R +   S   +N ++R + H+ S P   + +  Y +M       D  T  
Sbjct: 8   IAYANPIFHIRHLKLESFL-WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFP 66

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           F L +    L L    + H+ +L  G   D  + T+LL++Y+  G++ SA++VFD+ G +
Sbjct: 67  FLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSK 126

Query: 173 DIASWNALIAGLAQGNLAS-------------------------------EAVDLFKRMK 201
           D+ +WN+++   A+  L                                 EA+DLF+ M+
Sbjct: 127 DLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQ 186

Query: 202 M----EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
           +    E   +PNE T+   L+ACG LGA ++G  +H YI +  +++++V+  A+IDMYAK
Sbjct: 187 LPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAK 246

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDDVSYL 316
           CG L++A  VF+ +  +K +  ++ M+   A++G      +LF +M  +  + P+ V+++
Sbjct: 247 CGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFV 306

Query: 317 AALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
             L AC H GL+++G   F  M    G+ P+++HYG +VDL GR+G ++EA   + S+ M
Sbjct: 307 GILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPM 366

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
             D+++W +LL   ++ GD++  E A ++L+E+   N G +VLLSN+YA   RW +V  +
Sbjct: 367 EPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCI 426

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           R  M+ + + KVPG SY+EV GV+H+F   D+S  +   IY  LDEIM +++E GY   T
Sbjct: 427 RHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDT 486

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
             VL D+ E++KE AL YHSEKLA+AF L+ T   T +++ KNLRIC DCH V+K+ISK+
Sbjct: 487 KEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKL 546

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++REI+VRD  RFH F+DG+CSC+D+W
Sbjct: 547 FSREIVVRDCNRFHHFRDGSCSCRDFW 573


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/528 (40%), Positives = 306/528 (57%), Gaps = 40/528 (7%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET---- 127
           S +  NA++R LA S++P  A+  Y  +LR  H     T    LK+ A   A+       
Sbjct: 170 SADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLA 229

Query: 128 LQIHSHVLRHGF--------------------LADALL------------GTTLLDVYAK 155
           L +H+H ++ G                     L+DAL+              TL+  YA+
Sbjct: 230 LAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYAR 289

Query: 156 VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG 215
            G +  A+ +FDEM  R+  SW+A++ G  Q     EA+ LF RM+ +GV +P++  ++G
Sbjct: 290 AGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGV-RPDDTVLVG 348

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            LAAC  LG  ++G  +H Y++   + + V +  A++DMYAKCG +  A EVF  +K  K
Sbjct: 349 VLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMK-EK 407

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
           +++ W TM+   A+HG G  ALELF QM R GVKPDD++++ ALCAC H GLVD G  LF
Sbjct: 408 NVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELF 467

Query: 336 NSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           +SM    G+KP ++HYG +VDLL R G L EA ++V+ + M  D ++W  L+  C+ + +
Sbjct: 468 DSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKN 527

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           VE+AE   +  +E+  +  G +VLL N+YAA  R      +R  M+ + V K PG S +E
Sbjct: 528 VELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVE 587

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLHDIGEEEKENALCY 513
           + GVIH+F   D SH    EI  K DEI  +I+ E GY      VL DI EEEKENAL  
Sbjct: 588 IKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSR 647

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           HSEK+A+AF LI+TS+   I++ KNLR+C DCH V KLISKV++  ++
Sbjct: 648 HSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 120/231 (51%), Gaps = 2/231 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A ALF ++ A +   ++A++ G   +     A+  + +M     R D       L ACA+
Sbjct: 296 ARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQ 355

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L +   +H ++  +       LGT L+D+YAK GE+  A +VF  M  +++ +W  +
Sbjct: 356 LGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTM 415

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE-YIREE 239
           I GLA     SEA++LF +M+  GV KP+++  +GAL AC H G   +G ++ +  +R+ 
Sbjct: 416 IKGLAMHGRGSEALELFSQMERLGV-KPDDIAFIGALCACTHTGLVDKGRELFDSMVRKY 474

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +   +     ++D+ A+ GLL++A E+ + +  +   + W  ++     H
Sbjct: 475 GIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFH 525


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/568 (38%), Positives = 339/568 (59%), Gaps = 17/568 (2%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE----LAYAHALFRQINAPSTNDFN 77
           +KQ  A L  +G   S   P+ +K+      +        LA +H       +P +  F 
Sbjct: 26  LKQAHARLVVSGHAHS--LPLTTKLATLAVAAGAASYAGLLAASHP------SPDSFLFC 77

Query: 78  AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
           ++ R  A    P  A+ +YR++L  +    +   +   KACA + AL   + +H+H +  
Sbjct: 78  SLTRAAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRAGMGVHAHAVLL 137

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           GF +D  + T L+ +Y+K G++  A+K+FD +  R + +WNA+I+G  Q  LA  A++++
Sbjct: 138 GFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNGLAGRAIEVY 197

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
           + M++ G   P+  T +  L+AC   GA   G ++   I  ER++MNVV+  A+++MYA+
Sbjct: 198 REMRVAGE-APDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGAALVNMYAR 256

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           CGL++KA E FD ++ R ++VTW +M+  + +HG G  A++LF+ M + G  P+DV+++A
Sbjct: 257 CGLVNKAREWFDMLQER-NVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVA 315

Query: 318 ALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVK-SVSM 375
            L AC HAGLV DG   F SM +  G+ P  +HY S+VD+ GRAG L +A   +  S+  
Sbjct: 316 VLSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIHDSIPG 375

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
                +W  +LGAC+++ +  +    + +L+ +   N    VLLSN+YA   + + V +V
Sbjct: 376 EPGPEVWTAMLGACKMHKNFSLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKV 435

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           R  M  R +KK  G+S IE+GGV H F   +KSH K  EIY+ L++++ +I + GY   T
Sbjct: 436 RNTMIKRRLKKPIGYSLIEIGGVAHVFRMGEKSHPKTPEIYQYLEKLIHRITDAGYMPET 495

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS-IQVFKNLRICRDCHDVIKLISK 554
             VLH++ EEE+E AL YH EKLAVAFGL+ TS  T+ I++ KNLRIC DCH  IK +S 
Sbjct: 496 DSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCTAPIRIIKNLRICGDCHLAIKYMSA 555

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V NREIIVRD  RFH FK G CSC++YW
Sbjct: 556 VENREIIVRDMHRFHHFKAGKCSCQEYW 583


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/580 (36%), Positives = 342/580 (58%), Gaps = 10/580 (1%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           + LL++C+    ++ ++  ++   L    +F+  L  +++ ++  YA     +L YA  L
Sbjct: 19  HTLLKRCTH---LNKLNEGKIIHALLLNSRFRDDLV-MQNTLLNLYA--KCGDLVYARKL 72

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA- 123
           F ++++     + A++ G +   +P +A+L   +MLR   + +  T +  LKA + V + 
Sbjct: 73  FDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGST 132

Query: 124 -LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            + +  Q+H   LR+G+ ++  +   +LD+YA+   +  A+ +FD M  ++  SWNALIA
Sbjct: 133 DVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIA 192

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G A+     +A  LF  M  E V KP   T    L AC  +G+ ++G  +H  + +    
Sbjct: 193 GYARKGQGDKAFCLFSNMLRENV-KPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEK 251

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
           +   V N ++DMYAK G ++ A +VFD +  ++ +V+WN+M+  ++ HG G  AL+ FE+
Sbjct: 252 LVAFVGNTLLDMYAKSGSIEDAKKVFDRL-AKRDVVSWNSMLTGYSQHGLGKVALQRFEE 310

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M R  + P+D+++L  L AC+HAGL+D+G   F+ M    V+P + HY ++VDLLGRAG 
Sbjct: 311 MLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGH 370

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L  A   +  + +     +W  LLGAC+++ ++E+   A+  + E+ S+  G  VLL N+
Sbjct: 371 LDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNI 430

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YA   RW+D  +VRK MK   VKK P  S++E+   +H F   D +H + REI+   ++I
Sbjct: 431 YALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQI 490

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
             KIKE GY   +S VL  + ++E+E  L YHSEKLA+AF L++T   ++I++ KN+RIC
Sbjct: 491 SDKIKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRIC 550

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH   K +SK+  REIIVRD  RFH F DGACSC+DYW
Sbjct: 551 GDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 160/300 (53%), Gaps = 8/300 (2%)

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
           C   LK C  +  L E   IH+ +L   F  D ++  TLL++YAK G++V A+K+FDEM 
Sbjct: 18  CHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMS 77

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK--E 228
            RD+ +W ALI G +Q +   +A+ L   M   G+ KPN+ T+   L A   +G+    +
Sbjct: 78  SRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGL-KPNQFTLASLLKAASGVGSTDVLQ 136

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G ++H        D NV V  A++DMYA+C  L++A  +FD +   K+ V+WN ++  +A
Sbjct: 137 GRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFD-VMVSKNEVSWNALIAGYA 195

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK 348
             G G +A  LF  M R  VKP   +Y + LCAC   G ++ G  +   M   G K    
Sbjct: 196 RKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAF 255

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
              +++D+  ++G +++A  +   ++   D+V W ++L     +G   + ++A ++  EM
Sbjct: 256 VGNTLLDMYAKSGSIEDAKKVFDRLA-KRDVVSWNSMLTGYSQHG---LGKVALQRFEEM 311


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/520 (38%), Positives = 313/520 (60%), Gaps = 4/520 (0%)

Query: 65   FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
            F ++++     +N+++ G A    P NA+  + ++   +   DA T    + ACA +  L
Sbjct: 488  FNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDL 547

Query: 125  FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG-VRDIASWNALIAG 183
             +   IH  +++ GF +D  +   L+D+YAK G + SA+ +F++    +D  +WN +IA 
Sbjct: 548  DQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607

Query: 184  LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
              Q   A EA+  F +M++E  F PN VT +  L A  +L A++EG   H  I +     
Sbjct: 608  YMQNGHAKEAISSFHQMRLEN-FHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLS 666

Query: 244  NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            N +V N++IDMYAKCG L  + ++F+ +   K  V+WN M+  +AVHG G RA+ LF  M
Sbjct: 667  NTLVGNSLIDMYAKCGQLXYSEKLFNEMD-HKDTVSWNAMLSGYAVHGHGDRAIALFSLM 725

Query: 304  GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGR 362
              + V+ D VS+++ L AC H GLV++G ++F+SM++   +KP+++HY  +VDLLGRAG 
Sbjct: 726  QESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGL 785

Query: 363  LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
              E    +K + +  D  +W  LLG+C+++ +V++ E+A   LV++   N   FV+LS++
Sbjct: 786  FDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSI 845

Query: 423  YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
            YA   RW D G+ R  M +  +KK PG S++E+   +H F   DKSH +   ++   + +
Sbjct: 846  YAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTL 905

Query: 483  MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
            + K+++ GY    SCVL ++ EE+KE  L  HSE+LA+ F L++T   ++IQ+ KNLR+C
Sbjct: 906  LEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVC 965

Query: 543  RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             DCH   K ISK+  R IIVRD  RFH F+DG CSC DYW
Sbjct: 966  ADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 179/355 (50%), Gaps = 7/355 (1%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + +I  Y+L   ++   A ++F     PS   +N+++R    S +   A+  Y  M+   
Sbjct: 67  THLINLYSL--FHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG 124

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
              D  T +F LKAC   L L E +  H  + R G   D  +G  L+D+Y+K+G++  A+
Sbjct: 125 LEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAR 184

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           +VFD+M  RD+ +WNA+IAGL+Q     EAVD F+ M++ GV +P+ V++L        L
Sbjct: 185 EVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGV-EPSSVSLLNLFPGICKL 243

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
              +    IH Y+   R D +  V N +ID+Y+KCG +D A  VFD +   +  V+W TM
Sbjct: 244 SNIELCRSIHGYVF--RRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTM 300

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +  +A +G     LELF++M    V+ + VS ++A  A      ++ G  +        +
Sbjct: 301 MAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRI 360

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             ++     ++ +  + G  ++A  +   +  G D+V W  ++ A    G  E A
Sbjct: 361 DSDILVATPLMVMYAKCGETEKAKQLFWGLQ-GRDLVAWSAIIAALVQTGYPEEA 414



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 170/347 (48%), Gaps = 4/347 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I+ Y  S   ++  A  +F Q+       +  ++ G AH+      +  + +M  
Sbjct: 265 VSNGLIDLY--SKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL 322

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
           G+ R + ++   A  A A  + L +  +IH   L+    +D L+ T L+ +YAK GE   
Sbjct: 323 GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEK 382

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           AK++F  +  RD+ +W+A+IA L Q     EA+ LF+ M+ + + KPN VT++  L AC 
Sbjct: 383 AKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKM-KPNRVTLMSILPACA 441

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L   K G  IH +  +  +D ++    A++ MYAKCG    A   F+ +  R  +VTWN
Sbjct: 442 DLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWN 500

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
           +++  +A  GD   A+++F ++  + + PD  + +  + AC     +D G  +   +   
Sbjct: 501 SLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKL 560

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           G + +     +++D+  + G L  A  +        D V W  ++ A
Sbjct: 561 GFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 158/337 (46%), Gaps = 2/337 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E   A  LF  +       ++A++  L  +  P  A+  +++M     + + +T    L 
Sbjct: 379 ETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILP 438

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA +  L     IH   ++    +D   GT L+ +YAK G   +A   F+ M  RDI +
Sbjct: 439 ACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVT 498

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN+LI G AQ      A+D+F ++++  +  P+  T++G + AC  L    +G  IH  I
Sbjct: 499 WNSLINGYAQIGDPYNAIDMFYKLRLSAI-NPDAGTMVGVVPACALLNDLDQGTCIHGLI 557

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +   + +  V NA+IDMYAKCG L  A  +F+     K  VTWN ++ A+  +G    A
Sbjct: 558 VKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA 617

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           +  F QM      P+ V++++ L A  +     +G+     +   G   N     S++D+
Sbjct: 618 ISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDM 677

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
             + G+L  +  +   +    D V W  +L    ++G
Sbjct: 678 YAKCGQLXYSEKLFNEMD-HKDTVSWNAMLSGYAVHG 713



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 6/202 (2%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L +C  +  L   LQIH+ ++  GF     + T L+++Y+   +   A+ VFD       
Sbjct: 39  LSSCKHLNPL---LQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSR 94

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
             WN++I    +    +EA++++  M  +G+ +P++ T    L AC      +EG   H 
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGL-EPDKYTFTFVLKACTGALNLQEGVWFHG 153

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            I    L+ +V +   ++DMY+K G L +A EVFD +  ++ +V WN M+   +   D  
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAGLSQSEDPC 212

Query: 295 RALELFEQMGRAGVKPDDVSYL 316
            A++ F  M   GV+P  VS L
Sbjct: 213 EAVDFFRSMQLVGVEPSSVSLL 234


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/557 (38%), Positives = 338/557 (60%), Gaps = 18/557 (3%)

Query: 34  QFQSKLFPVRSKIIEFYAL----SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKP 89
           Q+   + P R+ +I + A+    + + +L  A   F  +   S   +NA+L G A +   
Sbjct: 183 QWLFDVMPERN-VITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLA 241

Query: 90  TNAVLWYRQMLRGSHRSDALTCSFALKACAR----VLALFETLQIHSHVLRHGFLADALL 145
             A+  + +M+      D  T    + AC+      LA      +H   ++     +  +
Sbjct: 242 EEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQ----LNCFV 297

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
            T LLD+YAK G++ SA+K+F+ M  R++ +WN++IAG AQ   ++ A++LFK M     
Sbjct: 298 RTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKK 357

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
             P+EVT++  ++ACGHLGA + G+ +  ++ E ++ +++   NA+I MY++CG ++ A 
Sbjct: 358 LTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAK 417

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
            VF  +  R  +V++NT++  FA HG G  A+ L   M   G++PD V+++  L AC+HA
Sbjct: 418 RVFQEMATR-DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHA 476

Query: 326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           GL+++G ++F S+ +    P + HY  +VDLLGR G L++A   ++ + M     ++ +L
Sbjct: 477 GLLEEGRKVFESIKD----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSL 532

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           L A +++  VE+ E+A+ KL E+  +N G+F+LLSN+YA+  RW DV R+R+AMK   VK
Sbjct: 533 LNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVK 592

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K  G+S++E GG +HKF  +D+SH +  +IY+ L E+  K++E GY A  SCVL D+ EE
Sbjct: 593 KTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEE 652

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE  +  HSEKLA+ + L+ +     I+V KNLR+C DCH  IK+ISK+  R IIVRD 
Sbjct: 653 EKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDN 712

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F DG CSCKDYW
Sbjct: 713 NRFHCFNDGLCSCKDYW 729



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 150/341 (43%), Gaps = 49/341 (14%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           Y H LF     P+   F ++LR  +H       VL Y QM     R DA      +K+  
Sbjct: 52  YTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG 111

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG--VRDIASW 177
                   +  H+HVL+ G  +DA +   ++D+YA++G I  A+KVFDE+    R +A W
Sbjct: 112 T-----GGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADW 166

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NA+++G  +     +A  LF  M                                     
Sbjct: 167 NAMVSGYWKWESEGQAQWLFDVMP------------------------------------ 190

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
               + NV+   A++  YAK   L+ A   FD +  R S+V+WN M+  +A +G    AL
Sbjct: 191 ----ERNVITWTAMVTGYAKVKDLEAARRYFDCMPER-SVVSWNAMLSGYAQNGLAEEAL 245

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
            LF++M  AG++PD+ +++  + AC+  G       L  ++    ++ N     +++D+ 
Sbjct: 246 RLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMY 305

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            + G L  A  +  ++  G ++V W +++      G   MA
Sbjct: 306 AKFGDLDSARKLFNTMP-GRNVVTWNSMIAGYAQNGQSAMA 345


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/455 (41%), Positives = 290/455 (63%), Gaps = 4/455 (0%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +H  VL+ GF A++ + T +  ++ ++ ++ SA+K FD M  + + SWNA+I+G AQ  L
Sbjct: 335 LHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGL 394

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
              AV LF++M    V +PN +T+   L+AC  LGA   G  +H  I EE L+ NV V  
Sbjct: 395 TEMAVALFEQMVKLNV-RPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMT 453

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           A+IDMYAKCG + +A  +F+ +   K++V+WN M+  + +HG G  AL+L++ M  A + 
Sbjct: 454 ALIDMYAKCGSISEARRIFNTMD-NKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLL 512

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           P   ++L+ L AC+H GLV++G ++F SM +   + P ++H   +VDLLGRAG+L+EA +
Sbjct: 513 PTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFE 572

Query: 369 IVKSVS-MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
           ++           +W  LLGAC ++ D ++A++AS+KL E+   N G +VLLSNL+ + +
Sbjct: 573 LISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKK 632

Query: 428 RWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487
           ++ +   VR+  K+R + K PG++ IE+G   H F   D++H +   IY  L+++  K+ 
Sbjct: 633 QYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMI 692

Query: 488 EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHD 547
           E GY   T   L+D+ EEEKE+ +  HSEKLA+AFGL+ST   T I++ KNLR+C DCH+
Sbjct: 693 EAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHN 752

Query: 548 VIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             K ISKV  R I+VRD  RFH F+DG CSC DYW
Sbjct: 753 ATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 167/339 (49%), Gaps = 6/339 (1%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           L+ + +A  +F  + +P T  +N +L GL+ S    +   + R +  GS R DA T +  
Sbjct: 162 LSRVDHARKVFDTVPSPDTVLWNTLLAGLSGSEAVES---FARMVCDGSVRPDATTLASV 218

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L A A V  +     +HS   + G      + T L+ +Y+K G++ SA+ +FD M   D+
Sbjct: 219 LPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDL 278

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            ++NALI+G +   +   +V+LF  +   G++ PN  T++  +      G       +H 
Sbjct: 279 VAYNALISGYSVNGMVGSSVNLFTELMTLGLW-PNSSTLVALIPVHSPFGHDLLAQCLHG 337

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           ++ +     N  V  A+  ++ +   ++ A + FD +   K++ +WN M+  +A +G   
Sbjct: 338 FVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMP-EKTMESWNAMISGYAQNGLTE 396

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            A+ LFEQM +  V+P+ ++  + L AC   G +  G  L   +    ++PN+    +++
Sbjct: 397 MAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALI 456

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           D+  + G + EA  I  ++    ++V W  ++    L+G
Sbjct: 457 DMYAKCGSISEARRIFNTMD-NKNVVSWNAMIAGYGLHG 494


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/523 (38%), Positives = 322/523 (61%), Gaps = 4/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  +   ++  +NA+++G A +   T A+  +++M+        ++   AL AC  
Sbjct: 381 ARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGE 440

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L E  ++H  ++R G  ++  +   L+ +Y K      A +VFDE+G +   SWNA+
Sbjct: 441 LGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAM 500

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G  Q   + +AV LF RM++E V KP+  T++  + A   +    +   IH Y     
Sbjct: 501 ILGCTQNGSSEDAVRLFSRMQLENV-KPDSFTLVSIIPALADISDPLQARWIHGYSIRLH 559

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           LD +V V  A+IDMYAKCG +  A  +F++ + R  ++TWN M+  +  HG G  A+ELF
Sbjct: 560 LDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRH-VITWNAMIHGYGSHGSGKVAVELF 618

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
           E+M  +G  P++ ++L+ L AC+HAGLVD+G   F+SM  + G++P M+HYG++VDLLGR
Sbjct: 619 EEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGR 678

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG+L EA   ++ + M   + ++  +LGAC+L+ +VE+AE +++++ E+        VLL
Sbjct: 679 AGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLL 738

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           +N+YA    W DV RVR AM+ + ++K PG+S +++   IH F++   +H + ++IY +L
Sbjct: 739 ANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARL 798

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
            +++ +IK  GY   T  + HD+ ++ K   L  HSEKLA+A+GLI T+  T+IQ+ KNL
Sbjct: 799 AKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNL 857

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C+DCH+  KLIS V  REII+RD  RFH FKDG CSC DYW
Sbjct: 858 RVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 163/328 (49%), Gaps = 3/328 (0%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL-TCSFALKACARVLALFETLQI 130
           + +D +A LR  A  S    A+  +  M   S     L T +  LK CA    L     +
Sbjct: 188 APDDHHARLRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAV 247

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H+ +   G   +AL  T L ++YAK      A++VFD M  RD  +WNAL+AG A+  LA
Sbjct: 248 HAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLA 307

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
             AV +  RM+ E   +P+ VT++  L AC    A     ++H +      D  V V  A
Sbjct: 308 EAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTA 367

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           ++D+Y KCG +D A +VFD ++ R S V+WN M+  +A +GD   AL LF++M   GV  
Sbjct: 368 ILDVYCKCGAVDSARKVFDGMQDRNS-VSWNAMIKGYAENGDATEALALFKRMVGEGVDV 426

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
            DVS LAAL AC   G +D+G R+   +   G++ N+    +++ +  +  R   A  + 
Sbjct: 427 TDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVF 486

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             +   T  V W  ++  C   G  E A
Sbjct: 487 DELGYKT-RVSWNAMILGCTQNGSSEDA 513


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/582 (36%), Positives = 342/582 (58%), Gaps = 14/582 (2%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           A  + L++ C SN AV   ++  +  HL   G  +  +F V   I  +   + LN+   A
Sbjct: 62  ATYSELIKCCISNRAVHEGNL--ICRHLYFNGH-RPMMFLVNVLINMYVKFNLLND---A 115

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
           H LF Q+   +   +  ++   +       A+     MLR + R +  T S  L++C   
Sbjct: 116 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCN-- 173

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
             + +   +H  +++ G  +D  + + L+DV+AK+GE   A  VFDEM   D   WN++I
Sbjct: 174 -GMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 232

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            G AQ + +  A++LFKRMK  G F   + T+   L AC  L   + G + H +I   + 
Sbjct: 233 GGFAQNSRSDVALELFKRMKRAG-FIAEQATLTSVLRACTGLALLELGMQAHVHI--VKY 289

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           D ++++ NA++DMY KCG L+ A  VF+ +K  + ++TW+TM+   A +G    AL+LFE
Sbjct: 290 DQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISGLAQNGYSQEALKLFE 348

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRA 360
           +M  +G KP+ ++ +  L AC+HAGL++DG   F SM    G+ P  +HYG ++DLLG+A
Sbjct: 349 RMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKA 408

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G+L +A  ++  +    D V W+TLLGAC++  ++ +AE A++K++ +   + G + LLS
Sbjct: 409 GKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLS 468

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA  ++WD V  +R  M++R +KK PG S+IEV   IH F   D SH +  E+ +KL+
Sbjct: 469 NIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLN 528

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           +++ ++   GY   T+ VL D+  E+ E++L +HSEKLA+AFGL++      I++ KNLR
Sbjct: 529 QLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLR 588

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IC DCH   KL SK+  R I++RD +R+H F+DG CSC DYW
Sbjct: 589 ICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 142/283 (50%), Gaps = 8/283 (2%)

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
           +D+ T S  +K C    A+ E   I  H+  +G      L   L+++Y K   +  A ++
Sbjct: 59  ADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQL 118

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FD+M  R++ SW  +I+  ++  +  +A++L   M  + V +PN  T    L +C  +  
Sbjct: 119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNV-RPNVYTYSSVLRSCNGMSD 177

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            +    +H  I +E L+ +V V +A+ID++AK G  + A  VFD +    ++V WN+++ 
Sbjct: 178 VR---MLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV-WNSIIG 233

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
            FA +     ALELF++M RAG   +  +  + L AC    L++ G++    +       
Sbjct: 234 GFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQ 291

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           ++    ++VD+  + G L++A  +   +    D++ W T++  
Sbjct: 292 DLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/528 (40%), Positives = 306/528 (57%), Gaps = 40/528 (7%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET---- 127
           S +  NA++R LA S++P  A+  Y  +LR  H     T    LK+ A   A+       
Sbjct: 170 SADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLA 229

Query: 128 LQIHSHVLRHGF--------------------LADALL------------GTTLLDVYAK 155
           L +H+H ++ G                     L+DAL+              TL+  YA+
Sbjct: 230 LAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYAR 289

Query: 156 VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG 215
            G +  A+ +FDEM  R+  SW+A++ G  Q     EA+ LF RM+ +GV +P++  ++G
Sbjct: 290 AGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGV-RPDDTVLVG 348

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            LAAC  LG  ++G  +H Y++   + + V +  A++DMYAKCG +  A EVF  +K  K
Sbjct: 349 VLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMK-EK 407

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
           +++ W TM+   A+HG G  ALELF QM R GVKPDD++++ ALCAC H GLVD G  LF
Sbjct: 408 NVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELF 467

Query: 336 NSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           +SM    G+KP ++HYG +VDLL R G L EA ++V+ + M  D ++W  L+  C+ + +
Sbjct: 468 DSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKN 527

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           VE+AE   +  +E+  +  G +VLL N+YAA  R      +R  M+ + V K PG S +E
Sbjct: 528 VELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVE 587

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLHDIGEEEKENALCY 513
           + GVIH+F   D SH    EI  K DEI  +I+ E GY      VL DI EEEKENAL  
Sbjct: 588 IKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSR 647

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           HSEK+A+AF LI+TS+   I++ KNLR+C DCH V KLISKV++  ++
Sbjct: 648 HSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 120/231 (51%), Gaps = 2/231 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A ALF ++ A +   ++A++ G   +     A+  + +M     R D       L ACA+
Sbjct: 296 ARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQ 355

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L +   +H ++  +       LGT L+D+YAK GE+  A +VF  M  +++ +W  +
Sbjct: 356 LGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTM 415

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE-YIREE 239
           I GLA     SEA++LF +M+  GV KP+++  +GAL AC H G   +G ++ +  +R+ 
Sbjct: 416 IKGLAMHGRGSEALELFSQMERLGV-KPDDIAFIGALCACTHTGLVDKGRELFDSMVRKY 474

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +   +     ++D+ A+ GLL++A E+ + +  +   + W  ++     H
Sbjct: 475 GIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFH 525


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/508 (37%), Positives = 308/508 (60%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N+++ G        +A+ ++++M     + D  T    L + A +  +   + +H  ++
Sbjct: 9   WNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLII 68

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + GF A  L+   L+D+YAK G++  A  VF +M  +D+ SW +L+ G +      EA+ 
Sbjct: 69  KTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIK 128

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF +M++ GV+ P+++ V   L+AC  L     G +IH  + +  L+ ++ V N+++ MY
Sbjct: 129 LFCKMRISGVY-PDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMY 187

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG +  A   FDN+  R  +++W  +++ +A +G G  +L+ ++QM   G KPD +++
Sbjct: 188 AKCGSIVDANRAFDNMPTR-DVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITF 246

Query: 316 LAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +  L AC+H GL+  G   F +M    G+KP  +HY  ++DLLGR+G+L EA  ++  + 
Sbjct: 247 IGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMV 306

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +  D V+W+ LL AC+++ ++E+ E+A++ L E+   N   +V+LSN+Y+A  +W+D  R
Sbjct: 307 VAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAAR 366

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R+ M++R + K PG+S+IE    +  F + D++H    EIY K+DEI+  IKE GY   
Sbjct: 367 IRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPD 426

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
            S  LHD  +E KE  L YHSEKLAVAFGL++  +   I++FKNLR+C DCH  +K  SK
Sbjct: 427 MSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSK 486

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           VY R II+RD   FH F +G CSC DYW
Sbjct: 487 VYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 111/218 (50%), Gaps = 3/218 (1%)

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
           M   D  SWN+LI G  +     +A+  F++M+   + K +E T+   L +   +   + 
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDM-KIDEYTLPSVLNSFASMKVMQN 59

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
              +H  I +   +   +V NA+IDMYAK G LD A  VF  +   K +V+W ++V  ++
Sbjct: 60  AISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKM-VDKDVVSWTSLVTGYS 118

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK 348
            +G    A++LF +M  +GV PD ++  + L AC    ++D G ++  ++   G++ ++ 
Sbjct: 119 HNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLS 178

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
              S+V +  + G + +A     ++    D++ W  L+
Sbjct: 179 VDNSLVTMYAKCGSIVDANRAFDNMPT-RDVISWTALI 215


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/582 (37%), Positives = 321/582 (55%), Gaps = 41/582 (7%)

Query: 40  FPVRSKIIEFYALSPLN----ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLW 95
            PVRS +  + A+  LN     +  A +LF  +   S   +NA++ G   +     A+  
Sbjct: 225 MPVRS-VSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 96  YRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLR-----HGFLADALLGT-- 147
           + +ML   S   D  T +  L ACA +  +    Q+H+++LR     +  + +AL+ T  
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 148 --------------------------TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
                                      LL+ Y K+G++ SA+++F  M  RD+ +W A+I
Sbjct: 344 KSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            G  Q     EA+DLF+ M   G  +PN  T+   L+ C  L     G +IH       L
Sbjct: 404 VGYEQNGRNDEAIDLFRSMITCGP-EPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLL 462

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + +  V NA+I MYA+ G    A  +FD +  RK  +TW +M++A A HG G  A+ LFE
Sbjct: 463 ERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFE 522

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRA 360
           +M RAGV+PD ++Y+  L AC+HAG V++G R ++ + N   + P M HY  +VDLL RA
Sbjct: 523 EMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARA 582

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G   EA + ++ + +  D + W +LL AC+++ + E+AE+A+ KL+ +  NN G +  ++
Sbjct: 583 GLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIA 642

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+Y+A  RW D  R+ KA K + V+K  GFS+  +   IH F   D  H +   +Y    
Sbjct: 643 NVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAA 702

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
            +  +IK  G+      VLHD+ +E KE  L  HSEKLA+AFGLIST E T+++V KNLR
Sbjct: 703 RMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLR 762

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +C DCH  IK ISKV +REIIVRD  RFH F+DG CSCKDYW
Sbjct: 763 VCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 147/331 (44%), Gaps = 36/331 (10%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           LA A  +F ++       +  ++ GL  + +   A+     M          T +  L +
Sbjct: 114 LADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSS 173

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD---- 173
           CA   A     ++HS V++ G  +   +  ++L++Y K G+  +A  VF+ M VR     
Sbjct: 174 CAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSW 233

Query: 174 ---------------------------IASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
                                      I SWNA+IAG  Q  L ++A+ LF RM  E   
Sbjct: 234 NAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSM 293

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            P+E T+   L+AC +LG  + G ++H YI    +  N  V NA+I  YAK G ++ A  
Sbjct: 294 APDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARR 353

Query: 267 VFD-NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
           + D +++   +++++  ++  +   GD   A E+F  M       D V++ A +      
Sbjct: 354 IMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMN----NRDVVAWTAMIVGYEQN 409

Query: 326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           G  D+ + LF SM  CG +PN     +V+ +
Sbjct: 410 GRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 440


>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 624

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/456 (41%), Positives = 290/456 (63%), Gaps = 12/456 (2%)

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ---------G 187
           H    D +LG  LLDV+A+ G I S +KVFD +   D+ +WNAL++  A+          
Sbjct: 171 HAASCDRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACAS 230

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
           + A   +++F RM +    KPNE+T++  + ACG LGA   G   H Y  + RL +N +V
Sbjct: 231 SAADAILEMFVRM-LSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIV 289

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
             A+++MYA CG LD A +VF     R +   +N M+   AVHG G  AL LF++M   G
Sbjct: 290 ATALVEMYAGCGRLDLAEQVFAAASDRDTRC-YNAMLHGLAVHGHGRAALSLFDRMHGEG 348

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           V  D V+ L+ +CAC HAGLVD+G+  F+ M    G++P+++HYG +VD+L RAGRL +A
Sbjct: 349 VPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDA 408

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426
             ++  + +  +  ++++L+ AC ++G +E+ +    +L+ +  ++ G+ VL+SN YA  
Sbjct: 409 EKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATT 468

Query: 427 ERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKI 486
            RWDD  + RK MK+  + K PG S++++ GV+H+F   DK+H   +EIY  +++I  ++
Sbjct: 469 NRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIETRL 528

Query: 487 KEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCH 546
            E G+ + TS  L D+ EE+K +AL YHSE+LA+AF LI+++    I++ KNLR+C DCH
Sbjct: 529 SECGHRSSTSSALFDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCH 588

Query: 547 DVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +  KL+S+VY REI++RDR RFH F+DG CSC D+W
Sbjct: 589 ESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 624



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 128/266 (48%), Gaps = 13/266 (4%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVL--------RGLAHSSKPTNAVL-WYRQMLRGSHRSD 107
            +A    +F +I  P    +NA+L        R +A +S   +A+L  + +ML  + + +
Sbjct: 192 RIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIKPN 251

Query: 108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD 167
            +T    + AC  + A+   +  H++ ++     + ++ T L+++YA  G +  A++VF 
Sbjct: 252 EITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFA 311

Query: 168 EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227
               RD   +NA++ GLA       A+ LF RM  EGV   + VTVL  + AC H G   
Sbjct: 312 AASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGV-PVDGVTVLSVMCACAHAGLVD 370

Query: 228 EG-DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
           EG D       E  ++ ++     ++DM ++ G L+ A ++   +    +   + +++ A
Sbjct: 371 EGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRA 430

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDD 312
             +HG      ++  ++ R  ++PDD
Sbjct: 431 CGIHGKLELGKKMIAELMR--LEPDD 454


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/578 (37%), Positives = 335/578 (57%), Gaps = 9/578 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ++L+ C+S GA+     +Q+   +  +G FQ  ++ V S +I+ YA     EL  A  + 
Sbjct: 420 SILRTCTSLGALDLG--EQIHTQVIKSG-FQFNVY-VCSVLIDMYA--KHGELDTARGIL 473

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           +++       + A++ G         A+  +++M     RSD +  S A+ ACA + AL 
Sbjct: 474 QRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALN 533

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           +  QIH+     G+  D  +G  L+ +YA+ G    A   F+++  +D  SWNALI+G A
Sbjct: 534 QGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFA 593

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q     EA+ +F +M   GV + N  T   A++A  +    K+G +IH  + +   D   
Sbjct: 594 QSGHCEEALQVFSQMNQAGV-EANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSET 652

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
              N +I +Y+KCG ++ A   F  +   K++V+WN M+  ++ HG G  A+ LFE+M +
Sbjct: 653 EASNVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQ 711

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQ 364
            G+ P+ V+++  L AC+H GLV++G+  F SM+   G+ P  +HY  VVDLLGRA  L 
Sbjct: 712 LGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLC 771

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
            A + ++ + +  D ++W+TLL AC ++ ++E+ E A+R L+E+   +   +VLLSN+YA
Sbjct: 772 CAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYA 831

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
              +WD   R R+ MK+R VKK PG S+IEV   IH FF  D+ H    +IYE +D++  
Sbjct: 832 VSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNE 891

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
           +  E GY      +L+D+ +E+K+     HSEKLAVAFGL+S +    I+V KNLR+C D
Sbjct: 892 RAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCND 951

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH+ IK +SK+ NR I+VRD  RFH F+ G CSCKDYW
Sbjct: 952 CHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 173/342 (50%), Gaps = 5/342 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  +F +++      +N+++ GLA       A+  + +M     + D +T +  L A
Sbjct: 264 LIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSA 323

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA V A ++  Q+HS+V++ G  +D ++  +LLD+Y K  +I +A + F      ++  W
Sbjct: 324 CASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLW 383

Query: 178 NALIAGLAQ-GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           N ++    Q GNL SE+  +F +M++EG+  PN+ T    L  C  LGA   G++IH  +
Sbjct: 384 NVMLVAYGQLGNL-SESYWIFLQMQIEGLM-PNQYTYPSILRTCTSLGALDLGEQIHTQV 441

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +     NV VC+ +IDMYAK G LD A  +   ++  + +V+W  M+  +  H     A
Sbjct: 442 IKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAGYTQHDLFAEA 500

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           L+LF++M   G++ D++ + +A+ AC     ++ G ++       G   ++    ++V L
Sbjct: 501 LKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSL 560

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             R GR Q+A    + +    D + W  L+      G  E A
Sbjct: 561 YARCGRAQDAYLAFEKID-AKDNISWNALISGFAQSGHCEEA 601



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 203/387 (52%), Gaps = 8/387 (2%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           +   ++L+ CS   A   +  +Q+ A +   G   S L  V + +I+ Y+ +   +LA  
Sbjct: 112 STFASVLRACSGGKAPFQV-TEQIHAKIIHHGFGSSPL--VCNPLIDLYSKNGHVDLA-- 166

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             +F ++    +  + A++ GL+ + +   A+L + QM + +        S  L AC ++
Sbjct: 167 KLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKI 226

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
                  Q+H  +++ G  ++  +   L+ +Y++ G +++A+++F +M  RD  S+N+LI
Sbjct: 227 ELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLI 286

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           +GLAQ   +  A+ LF++M+++   KP+ VTV   L+AC  +GA  +G ++H Y+ +  +
Sbjct: 287 SGLAQRGFSDRALQLFEKMQLD-CMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGM 345

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
             ++++  +++D+Y KC  ++ A E F   +  +++V WN M++A+   G+   +  +F 
Sbjct: 346 SSDLIIEGSLLDLYVKCFDIETAHEYFLTTET-ENVVLWNVMLVAYGQLGNLSESYWIFL 404

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           QM   G+ P+  +Y + L  C   G +D G ++   +   G + N+     ++D+  + G
Sbjct: 405 QMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHG 464

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGA 388
            L  A  I++ +    D+V W  ++  
Sbjct: 465 ELDTARGILQRLR-EEDVVSWTAMIAG 490



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 135/266 (50%), Gaps = 3/266 (1%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           R++  T  +  + C    +L +  ++H+ + + GF  + +LG+ L+D+Y   GE+ +A K
Sbjct: 7   RANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIK 66

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC-GHL 223
           +FD++   +++ WN +I+GL    LAS+ + LF  M  E V  P+E T    L AC G  
Sbjct: 67  LFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENV-TPDESTFASVLRACSGGK 125

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
             ++  ++IH  I       + +VCN +ID+Y+K G +D A  VF+ +  + S V+W  M
Sbjct: 126 APFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDS-VSWVAM 184

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +   + +G    A+ LF QM ++ V P    + + L AC    L   G +L   +   G+
Sbjct: 185 ISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGL 244

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDI 369
                   ++V L  R G L  A  I
Sbjct: 245 SSETFVCNALVTLYSRWGNLIAAEQI 270


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/583 (36%), Positives = 335/583 (57%), Gaps = 18/583 (3%)

Query: 5   NALLQKCS-----SNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA 59
           N LL+KC+     + G + H H+ Q          F+  L  + + ++  YA      L 
Sbjct: 55  NTLLKKCTVFKLLTQGRIVHGHLIQ--------SIFRHDLV-MNNTLLNMYA--KCGSLE 103

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
            A  +F ++       +  ++ G +   +P +A++ + QMLR     +  T S  +KA A
Sbjct: 104 EARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAA 163

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
                    Q+H   ++ GF ++  +G+ LLD+Y + G +  A+ VFD +  R+  SWNA
Sbjct: 164 AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA 223

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           LIAG A+     +A++LF+ M  EG F+P+  +      AC   G  ++G  +H Y+ + 
Sbjct: 224 LIAGHARRCGTEKALELFQGMLREG-FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKS 282

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
              +     N ++DMYAK G +  A ++FD +  ++ +V+WN+++ A+A HG G  A+  
Sbjct: 283 GEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQHGFGNEAVCW 341

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           FE+M R G++P+++S+L+ L AC+H+GL+D+G   +  M   G+     HY ++VDLLGR
Sbjct: 342 FEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGR 401

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L  A   ++ + +     +W+ LL AC+++ + E+   A+  + E+  ++ G  V+L
Sbjct: 402 AGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVIL 461

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
            N+YA+  RW+D  RVRK MK   VKK P  S++E+   IH F  +D+ H +  EI  K 
Sbjct: 462 YNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKW 521

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +E++ KIKE GY   TS V+  + ++E+E  L YHSEK+A+AF L++T   ++I + KN+
Sbjct: 522 EEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNI 581

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH  IKL SK   REIIVRD  RFH FKDGACSCKDYW
Sbjct: 582 RVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/548 (37%), Positives = 315/548 (57%), Gaps = 38/548 (6%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           P+   +N +L G  ++     AV  +R ML      D  T S  L A   +  +    Q+
Sbjct: 203 PNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQV 262

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H +V++ G  +D  + + +LD+Y K G +    +VFDE+   +I S NA + GL++  + 
Sbjct: 263 HGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMV 322

Query: 191 S-----------------------------------EAVDLFKRMKMEGVFKPNEVTVLG 215
                                               EA++LF+ M+  GV +PN VT+  
Sbjct: 323 DTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGV-EPNAVTIPS 381

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            + ACG++ A   G +IH +     +  +V V +A+IDMYAKCG +  A   FD +    
Sbjct: 382 LIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSAL- 440

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
           +LV+WN ++  +A+HG     +E+F  M ++G KPD V++   L AC   GL ++G R +
Sbjct: 441 NLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCY 500

Query: 336 NSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           NSM+   G++P M+HY  +V LL R G+L+EA  I+K +    D  +W  LL +C+++ +
Sbjct: 501 NSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNN 560

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           + + EIA+ KL  +   N G+++LLSN+YA+   WD+  R+R+ MK++ ++K PG+S+IE
Sbjct: 561 LSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIE 620

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYH 514
           VG  +H     D+SH + ++I EKLD++  ++K+ GY   T+ VL D+ E++KE  LC H
Sbjct: 621 VGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGH 680

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SEKLAV  GL++TS    +QV KNLRIC DCH VIK+IS++  REI VRD  RFH FKDG
Sbjct: 681 SEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDG 740

Query: 575 ACSCKDYW 582
            CSC D+W
Sbjct: 741 VCSCGDFW 748



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/456 (23%), Positives = 200/456 (43%), Gaps = 74/456 (16%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALS-PLNELAYAHALFR 66
           L +C S+   S    +Q  A +     F      + + ++ FYA +  L+    +  L  
Sbjct: 5   LSQCLSSSTASLSQARQAHALILRLNLFSDT--QLTTSLLSFYANALSLSTPQLSLTLSS 62

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            +  P+   F++++   A S    + +  +  +       DA     A+K+CA + AL  
Sbjct: 63  HLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDP 122

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             Q+H+     GFL D+++ ++L  +Y K   I+ A+K+FD M  RD+  W+A+IAG ++
Sbjct: 123 GQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSR 182

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE------------------ 228
             L  EA +LF  M+  GV +PN V+  G LA  G+ G + E                  
Sbjct: 183 LGLVEEAKELFGEMRSGGV-EPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGS 241

Query: 229 -----------------GDKIHEYIREERLDMNVVVCNAVIDMYAKC------------- 258
                            G ++H Y+ ++ L  +  V +A++DMY KC             
Sbjct: 242 TVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEV 301

Query: 259 ------------------GLLDKAFEVFDNIKCRK---SLVTWNTMVMAFAVHGDGPRAL 297
                             G++D A EVF+  K +K   ++VTW +++ + + +G    AL
Sbjct: 302 EEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEAL 361

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           ELF  M   GV+P+ V+  + + AC +   +  G  +       G+  ++    +++D+ 
Sbjct: 362 ELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMY 421

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            + GR+Q A      +S   ++V W  ++    ++G
Sbjct: 422 AKCGRIQLARRCFDKMS-ALNLVSWNAVMKGYAMHG 456



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 112/250 (44%), Gaps = 7/250 (2%)

Query: 114 ALKAC--ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK---KVFDE 168
           AL  C  +   +L +  Q H+ +LR    +D  L T+LL  YA    + + +    +   
Sbjct: 4   ALSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSH 63

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
           +    + S+++LI   A+ +     +  F  +    +  P+   +  A+ +C  L A   
Sbjct: 64  LPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLI-PDAFLLPSAIKSCASLRALDP 122

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G ++H +        + +V +++  MY KC  +  A ++FD +  R  +V W+ M+  ++
Sbjct: 123 GQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDR-DVVVWSAMIAGYS 181

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK 348
             G    A ELF +M   GV+P+ VS+   L    + G  D+ V +F  M   G  P+  
Sbjct: 182 RLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGS 241

Query: 349 HYGSVVDLLG 358
               V+  +G
Sbjct: 242 TVSCVLPAVG 251


>gi|326525961|dbj|BAJ93157.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 615

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/531 (38%), Positives = 332/531 (62%), Gaps = 7/531 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRG-LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           + YA A+F  ++ P   D+N ++RG +     P  A+  Y  ML      D  T  F LK
Sbjct: 86  MEYAAAIFATLDEPEAFDYNTLMRGHVVGGRDPAAALRLYVDMLHNDVVPDGYTFPFVLK 145

Query: 117 ACARVLALFETLQIHSHVLRHGFLA-DALLGTTLLDVYAKVGEIVSAKKVFDEM--GVRD 173
           ACA++LA  +  Q+  H ++ GFL  D     +L+  Y K GE   A++ F++M  G R 
Sbjct: 146 ACAQLLAFRQGRQLQGHAMKLGFLEHDEHAQNSLISFYGKCGEPELARRAFEQMEAGERT 205

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
            ASW+AL+A   +    ++ ++ F  M  +G ++P+E +++ AL+AC HLGA+  G  +H
Sbjct: 206 AASWSALLAAYTKAGRWADCLESFGAMVRDG-WRPDESSMVSALSACAHLGAYDVGRSVH 264

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
             +    + +N  +  +++DMYAKCG ++KA  VFD +  +K+  T++ MV   A+HGDG
Sbjct: 265 GALLRNTVTLNTFMETSLVDMYAKCGCIEKATAVFDGMDGKKNEWTYSAMVSGLALHGDG 324

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGS 352
            +AL++F+ M   G KPD+  Y+  L AC+ +GL+++G+R F+ M     V PN +HYG 
Sbjct: 325 RKALKVFDAMISEGHKPDEAVYVGVLNACSRSGLLEEGLRCFDRMRLERKVAPNAQHYGC 384

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN- 411
           +VDL+ RAGR+ EA +++ S+  G     W++LL AC+++GD+E+A+ A ++L  +G   
Sbjct: 385 MVDLMARAGRMDEARELIGSMPTGPTDTAWRSLLNACRIHGDIELADRALQELARLGGAV 444

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           N GD+++L++++A  + W++   +R    +R + + PGFS +EV G +H+F + D+SH +
Sbjct: 445 NAGDYIILADMHAKAKNWEEAVALRTEAVHRGLAQAPGFSAVEVHGKMHRFTSQDRSHPR 504

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
             +IYE L ++ ++++  GY   TS V  +  +EEK  A+  HS+KLA+AFGL+ST E T
Sbjct: 505 TADIYEMLHQMEWQLRFEGYKPDTSEVALEADDEEKRRAVAAHSQKLAMAFGLLSTPEGT 564

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            ++V  NLR+ ++CH    LIS+++ RE++VRDR RFHRF+ G CSC +YW
Sbjct: 565 PVRVVTNLRMSKECHAYSALISEIFGREVVVRDRNRFHRFRRGGCSCGNYW 615


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/581 (37%), Positives = 334/581 (57%), Gaps = 15/581 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ++L+ C+S GA+     +Q+   +  TG FQ  ++ V S +I+ YA     +L  AH + 
Sbjct: 420 SILRTCTSVGALDLG--EQIHTQVIKTG-FQFNVY-VCSVLIDMYA--KHGKLDTAHVIL 473

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           R +       + A++ G A  +    A+  +++ML    +SD +  S A+ ACA + AL 
Sbjct: 474 RTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALN 533

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           +  QIH+     G+  D  +G  L+ +YA+ G I  A   F+++  +D  SWN LI+G A
Sbjct: 534 QGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFA 593

Query: 186 QGNLASEAVDLFKRM---KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           Q     +A+ +F +M   K+E  F     T   A++A  ++   K+G +IH  I +   D
Sbjct: 594 QSGYCEDALKVFAQMNRAKLEASF----FTFGSAVSAAANIANIKQGKQIHAMIIKRGFD 649

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            ++ V NA+I  YAKCG ++ A   F  +   K+ V+WN M+  ++ HG G  A+ LFE+
Sbjct: 650 SDIEVSNALITFYAKCGSIEDARREFCEMP-EKNDVSWNAMITGYSQHGYGNEAVNLFEK 708

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAG 361
           M + G  P+ V+++  L AC+H GLV  G+  F SM+   G+ P   HY  VVDL+ RAG
Sbjct: 709 MKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAG 768

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L  A   ++ + +  D  +W+TLL AC ++ +VE+ E A++ L+E+   +   +VLLSN
Sbjct: 769 FLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSN 828

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YA   +WD   + R+ M+NR VKK PG S+IEV   +H F+  D+ H    +IYE L E
Sbjct: 829 MYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAE 888

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           +  K  E GY      +L+D+ +E+K+  +  HSEKLA+ FGL+S S+   I V KNLR+
Sbjct: 889 LNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRV 948

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C+DCH  IK +SK+ NR IIVRD  RFH F+ G CSCKDYW
Sbjct: 949 CKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 174/353 (49%), Gaps = 5/353 (1%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           ++  Y+  P      A  +F ++ +     FN+++ GLA       A+  + +M R   +
Sbjct: 254 LVTLYSRMP--NFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLK 311

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            D +T +  L ACA   AL +  Q+HS+V++ G  +D ++   LLD+Y    +I +A ++
Sbjct: 312 PDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEM 371

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           F      ++  WN ++    + +  SE+  +F++M+++G+  PN+ T    L  C  +GA
Sbjct: 372 FLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLI-PNQFTYPSILRTCTSVGA 430

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
              G++IH  + +     NV VC+ +IDMYAK G LD A  +   +     +V+W  ++ 
Sbjct: 431 LDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTALIS 489

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
            +A H     AL+ F++M   G++ D++ + +A+ AC     ++ G ++       G   
Sbjct: 490 GYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSE 549

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           ++    ++V L  R GR++EA    + +    D + W  L+      G  E A
Sbjct: 550 DLSIGNALVSLYARCGRIKEAYLEFEKID-AKDSISWNGLISGFAQSGYCEDA 601



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 187/383 (48%), Gaps = 10/383 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL  C ++G++  +  K+L   +   G F ++       +  ++AL  L+ +     +F 
Sbjct: 16  LLDLCLNSGSL--VECKKLHGKILKLG-FGNESVLCNKLVDVYFALGDLDGVV---KVFE 69

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA-RVLALF 125
            +   S   ++ ++ G          +  +  M+  +     ++ +  L+AC+   + + 
Sbjct: 70  DMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIR 129

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              QIH+ ++ HG L   ++   L+ +YAK G I+SA+KVFD +  +D  SW A+I+G +
Sbjct: 130 YAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFS 189

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q     EA+ LF  M   G+F P        L+ C  +  +  G+++H  + +    +  
Sbjct: 190 QNGYEEEAIHLFCEMHTAGIF-PTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLET 248

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            VCNA++ +Y++      A +VF  ++  K  V++N+++   A  G    ALELF +M R
Sbjct: 249 YVCNALVTLYSRMPNFVSAEKVFSKMQ-SKDEVSFNSLISGLAQQGFSDGALELFTKMKR 307

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
             +KPD V+  + L AC   G +  G +L + +   G+  +M   G+++DL      ++ 
Sbjct: 308 DYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKT 367

Query: 366 ACDIVKSVSMGTDMVLWQTLLGA 388
           A ++  + +   ++VLW  +L A
Sbjct: 368 AHEMFLT-AQTENVVLWNVMLVA 389



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 122/235 (51%), Gaps = 6/235 (2%)

Query: 104 HRSDALTCS---FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
           HR     C    + L  C    +L E  ++H  +L+ GF  +++L   L+DVY  +G++ 
Sbjct: 3   HRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLD 62

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
              KVF++M  R + SW+ +I+G  +  +++  +DLF  M  E V  P E++    L AC
Sbjct: 63  GVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENV-SPTEISFASVLRAC 121

Query: 221 -GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
            GH    +  ++IH  I    L  + ++ N +I +YAK GL+  A +VFDN+ C K  V+
Sbjct: 122 SGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNL-CTKDSVS 180

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           W  M+  F+ +G    A+ LF +M  AG+ P    + + L  C    L D G +L
Sbjct: 181 WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQL 235


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/566 (37%), Positives = 329/566 (58%), Gaps = 17/566 (3%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSK-IIEFYALSPLNELAYAH-ALFRQINAPSTNDFNAVLR 81
           QL AH+   G    +  P+ S  +I FY+ +    L Y+   +F      S   +++V+ 
Sbjct: 41  QLHAHIIKLGL---QTIPLLSHHLINFYSKT---HLPYSSLQIFHDSPHKSATTWSSVIS 94

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
             A +  P  ++ ++R MLR     D      A K+C  + +L     +H   L+  +  
Sbjct: 95  SFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHCFALKTAYHL 154

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM- 200
           D  +G++++D+YAK G+I  A  VFDEM  R++ SW+ LI G  Q     E++ LFKR  
Sbjct: 155 DIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFL 214

Query: 201 ---KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
              + EGV   N+ T+   L  CG     + G  IH    +   D +  V +++I +Y+K
Sbjct: 215 VEEENEGV---NDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSK 271

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDDVSYL 316
           CG++++A++VF+ +  R +L  WN M++A A H    +  ELF++M    G+K + +++L
Sbjct: 272 CGVVEEAYDVFEEVTVR-NLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFL 330

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
             L AC+HAGLV+ G   F  M + G++P  +HY ++VDLLGRAG+L +A  +++ + M 
Sbjct: 331 CVLYACSHAGLVEKGKYYFELMKDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPME 390

Query: 377 TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVR 436
               +W  LL  C+L+G+ ++A   + ++ E+GS + G  V+LSN YAA  RW++  + R
Sbjct: 391 PTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAAAGRWEEAAKAR 450

Query: 437 KAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTS 496
           K M++R +KK  G S++E G  IH F   D+SH K  EIY+KLDE+  ++ + GY A TS
Sbjct: 451 KMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEEMDKAGYVADTS 510

Query: 497 CVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVY 556
            VL ++  EEK  ++ YHSE+LA+AFG I+      I+V KNLR+C DCH  IK ISK  
Sbjct: 511 FVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDCHTAIKFISKCT 570

Query: 557 NREIIVRDRVRFHRFKDGACSCKDYW 582
            R IIVRD  RFHRF+DG C+C DYW
Sbjct: 571 GRVIIVRDNNRFHRFEDGKCTCGDYW 596



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 154/313 (49%), Gaps = 23/313 (7%)

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           +L + LQ+H+H+++ G     LL   L++ Y+K     S+ ++F +   +   +W+++I+
Sbjct: 35  SLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSATTWSSVIS 94

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
             AQ +L   +++ F+ M  +GV  P++     A  +CG L +      +H +  +    
Sbjct: 95  SFAQNDLPLLSLNYFRLMLRQGV-PPDDHIFPSATKSCGILSSLPVAKMLHCFALKTAYH 153

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
           +++ V ++VIDMYAKCG +  A  VFD +  R ++V+W+ ++  +   G+   +L LF++
Sbjct: 154 LDIFVGSSVIDMYAKCGDICYAHNVFDEMPYR-NVVSWSGLIYGYVQLGEDDESLRLFKR 212

Query: 303 M----GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-------ANCGVKPNMKHYG 351
                   GV  +D +  + L  C  + L+  G RL + +       ++C V        
Sbjct: 213 FLVEEENEGV--NDFTLSSVLRVCGGSTLLQMG-RLIHGLSFKTSFDSSCFVA------S 263

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
           S++ L  + G ++EA D+ + V++  ++ +W  +L AC  +   +       K+  +G  
Sbjct: 264 SLISLYSKCGVVEEAYDVFEEVTV-RNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGM 322

Query: 412 NCGDFVLLSNLYA 424
                  L  LYA
Sbjct: 323 KANFITFLCVLYA 335


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/578 (34%), Positives = 340/578 (58%), Gaps = 11/578 (1%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            +L  CSS   ++    +Q+   +  +G F S ++ V+S +++ YA     +L  A  + 
Sbjct: 270 TILTACSS--VLARCFGEQVHGFIVKSG-FGSNVY-VQSALVDMYA--KCGDLKNAKNML 323

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             +       +N+++ G         A+  ++ M   + + D  T    L  C  V+   
Sbjct: 324 ETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCC--VVGSI 381

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
               +H  +++ GF    L+   L+D+YAK G++  A  VF++M  +D+ SW +L+ G A
Sbjct: 382 NPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYA 441

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q N   E++ +F  M++ GV  P++  V   L+AC  L   + G ++H    +  L  + 
Sbjct: 442 QNNSHEESLKIFCDMRVTGV-NPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQ 500

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V N+++ MYAKCG LD A  +F +++  K ++TW  +++ +A +G G  +L+ ++ M  
Sbjct: 501 SVYNSLVAMYAKCGCLDDADAIFVSMQV-KDVITWTAIIVGYAQNGKGRNSLKFYDAMVS 559

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQ 364
           +G +PD ++++  L AC+HAGLVD+G + F  M    G+KP  +HY  ++DL GR+G+L 
Sbjct: 560 SGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLD 619

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           EA  ++  + +  D  +W++LL AC+++ ++E+AE A+  L E+   N   +V+LSN+Y+
Sbjct: 620 EAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYS 679

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
           A  +W+DV ++RK MK++ + K PG S++E+   ++ F + D+ H +  EIY K+DEI+ 
Sbjct: 680 ASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIIL 739

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
           +IKE GY    S  LHD+ +E KE  L YHSEKLAVAFGL++   +  I++FKNLR+C D
Sbjct: 740 RIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGD 799

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH  +K IS+V+ R II+RD   FH F++G CSC DYW
Sbjct: 800 CHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 188/388 (48%), Gaps = 17/388 (4%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
            L ++L+ CSS G    I   ++         F+  +F V + +++ YA      ++ A 
Sbjct: 164 TLGSVLRVCSSLGL---IQTGEMIHGFVVKNGFEGNVFVV-TGLVDMYAKCKC--VSEAE 217

Query: 63  ALFRQINAPSTND--FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
            LF+ +     N   + A++ G A +     AV ++R M       +  T    L AC+ 
Sbjct: 218 FLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSS 277

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           VLA     Q+H  +++ GF ++  + + L+D+YAK G++ +AK + + M   D+ SWN+L
Sbjct: 278 VLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSL 337

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC--GHLGAWKEGDKIHEYIRE 238
           + G  +  L  EA+ LFK M    + K ++ T    L  C  G +        +H  I +
Sbjct: 338 MVGFVRHGLEEEALRLFKNMHGRNM-KIDDYTFPSVLNCCVVGSINP----KSVHGLIIK 392

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
              +   +V NA++DMYAK G +D A+ VF+ +   K +++W ++V  +A +     +L+
Sbjct: 393 TGFENYKLVSNALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTGYAQNNSHEESLK 451

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           +F  M   GV PD     + L AC    L++ G ++       G++ +   Y S+V +  
Sbjct: 452 IFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYA 511

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           + G L +A  I  S+ +  D++ W  ++
Sbjct: 512 KCGCLDDADAIFVSMQV-KDVITWTAII 538



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 131/241 (54%), Gaps = 3/241 (1%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            T++  Y  VG +V A+++FD    +   +W+++I+G  +     EA DLF+ M++EG +
Sbjct: 100 NTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEG-W 158

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           K ++ T+   L  C  LG  + G+ IH ++ +   + NV V   ++DMYAKC  + +A  
Sbjct: 159 KASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEF 218

Query: 267 VFDNIKC-RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
           +F  ++  RK+ V W  MV  +A +GDG +A+E F  M   GV+ +  ++   L AC+  
Sbjct: 219 LFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSV 278

Query: 326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
                G ++   +   G   N+    ++VD+  + G L+ A ++++++    D+V W +L
Sbjct: 279 LARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETME-DDDVVSWNSL 337

Query: 386 L 386
           +
Sbjct: 338 M 338



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 150/303 (49%), Gaps = 27/303 (8%)

Query: 96  YRQMLRGSHRSDALTCSFALKACARVLALFETLQ-IHSHVLRHGFLADALLGTTLLDVYA 154
           +R M     ++   T    L+ C+  L L +T + IH  V+++GF  +  + T L+D+YA
Sbjct: 150 FRSMRLEGWKASQFTLGSVLRVCSS-LGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYA 208

Query: 155 KVGEIVSAKKVFD--EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           K   +  A+ +F   E   ++   W A++ G AQ     +AV+ F+ M  +GV + N+ T
Sbjct: 209 KCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGV-ECNQYT 267

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
               L AC  + A   G+++H +I +     NV V +A++DMYAKCG L  A  + + ++
Sbjct: 268 FPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETME 327

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC---------N 323
               +V+WN++++ F  HG    AL LF+ M    +K DD ++ + L  C          
Sbjct: 328 -DDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSV 386

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
           H  ++  G   +  ++N           ++VD+  + G +  A  + + + +  D++ W 
Sbjct: 387 HGLIIKTGFENYKLVSN-----------ALVDMYAKTGDMDCAYTVFEKM-LEKDVISWT 434

Query: 384 TLL 386
           +L+
Sbjct: 435 SLV 437



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 2/147 (1%)

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N +I  Y   G L +A E+FD   C KS +TW++++  +   G    A +LF  M   G 
Sbjct: 100 NTMISSYVNVGRLVEARELFDGCSC-KSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGW 158

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           K    +  + L  C+  GL+  G  +   +   G + N+     +VD+  +   + EA  
Sbjct: 159 KASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEF 218

Query: 369 IVKSVSMG-TDMVLWQTLLGACQLYGD 394
           + K +     + VLW  ++      GD
Sbjct: 219 LFKGLEFDRKNHVLWTAMVTGYAQNGD 245


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 336/578 (58%), Gaps = 22/578 (3%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ++L+ C++ GA      +Q+   +  TG FQ  ++ V S +I+ YA     +L +A  +F
Sbjct: 443 SILKTCTTLGATDLG--EQIHTQVLKTG-FQFNVY-VSSVLIDMYA--KHGKLDHALKIF 496

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           R++       + A++ G     K T A+  +++M     +SD +  + A+ ACA + AL 
Sbjct: 497 RRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALD 556

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           +  QIH+     G+  D  +G  L+ +YA+ G++  A   FD++  +D  SWN+L++G A
Sbjct: 557 QGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFA 616

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q     EA+++F +M   G+ + N  T   A++A  ++   + G +IH  IR+   D   
Sbjct: 617 QSGYFEEALNIFAQMNKAGL-EINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSET 675

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V NA+I +YAKCG +D               ++WN+M+  ++ HG G  AL+LFE M +
Sbjct: 676 EVSNALITLYAKCGTIDD--------------ISWNSMITGYSQHGCGFEALKLFEDMKQ 721

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQ 364
             V P+ V+++  L AC+H GLVD+G+  F SM+    + P  +HY  VVDLLGR+G L 
Sbjct: 722 LDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLS 781

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
            A   V+ + +  D ++W+TLL AC ++ ++++ E A+  L+E+   +   +VL+SN+YA
Sbjct: 782 RAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYA 841

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
              +WD   R R+ MK+R VKK PG S++EV   +H FF  D++H +   IYE L  + F
Sbjct: 842 VSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDF 901

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
           +  E GY    + +L D    +K+     HSE+LA+AFGL+S + +T + VFKNLR+C D
Sbjct: 902 RAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCED 961

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH+ IK +SK+ +R IIVRD  RFH FK G+CSCKDYW
Sbjct: 962 CHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 185/382 (48%), Gaps = 37/382 (9%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +L+ CS N AVS   ++Q+ A   T+G F+S  F + + +I+ Y  +    L+ A  +F 
Sbjct: 169 VLRGCSGN-AVSFRFVEQIHAKTITSG-FESSTF-ICNPLIDLYFKNGF--LSSAKKVFE 223

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            + A  +  + A++ GL+ +     A+L              L C   L AC +V     
Sbjct: 224 NLKARDSVSWVAMISGLSQNGYEEEAML--------------LFCQIVLSACTKVEFFEF 269

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             Q+H  VL+ GF ++  +   L+ +Y++ G + SA+++F  M  RD  S+N+LI+GLAQ
Sbjct: 270 GKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQ 329

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
               + A+ LFK+M ++   KP+ VTV   L+AC  +GA   G + H Y  +  +  ++V
Sbjct: 330 QGYINRALALFKKMNLD-CQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIV 388

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V  +++D+Y KC  +  A E F    C   L   N             ++ ++F QM   
Sbjct: 389 VEGSLLDLYVKCSDIKTAHEFF---LCYGQLDNLN-------------KSFQIFTQMQIE 432

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           G+ P+  +Y + L  C   G  D G ++   +   G + N+     ++D+  + G+L  A
Sbjct: 433 GIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHA 492

Query: 367 CDIVKSVSMGTDMVLWQTLLGA 388
             I + +    D+V W  ++  
Sbjct: 493 LKIFRRLK-ENDVVSWTAMIAG 513



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 110/260 (42%), Gaps = 16/260 (6%)

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
           G  L+D Y   G++  A  VFDEM +R ++ WN +        L      LF+RM  + V
Sbjct: 100 GLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNV 159

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
                +  +      G+  +++  ++IH        + +  +CN +ID+Y K G L  A 
Sbjct: 160 EFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAK 219

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
           +VF+N+K R S V+W  M+   + +G    A+ LF Q+               L AC   
Sbjct: 220 KVFENLKARDS-VSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKV 264

Query: 326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
              + G +L   +   G         ++V L  R+G L  A  I   +S   D V + +L
Sbjct: 265 EFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQ-RDRVSYNSL 323

Query: 386 LGACQLYGDVEMAEIASRKL 405
           +      G +  A    +K+
Sbjct: 324 ISGLAQQGYINRALALFKKM 343


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/523 (38%), Positives = 308/523 (58%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH LF +I   S   + A+  G   S +   A+  +++M+    + D+      L AC  
Sbjct: 165 AHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVH 224

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           V  L     I  ++       ++ + TTL+++YAK G++  A+ VFD M  +DI +W+ +
Sbjct: 225 VGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTM 284

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G A  +   E ++LF +M  E + KP++ +++G L++C  LGA   G+     I    
Sbjct: 285 IQGYASNSFPKEGIELFLQMLQENL-KPDQFSIVGFLSSCASLGALDLGEWGISLIDRHE 343

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              N+ + NA+IDMYAKCG + + FEVF  +K  K +V  N  +   A +G    +  +F
Sbjct: 344 FLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSFAVF 402

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGR 359
            Q  + G+ PD  ++L  LC C HAGL+ DG+R FN+++    +K  ++HYG +VDL GR
Sbjct: 403 GQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGR 462

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L +A  ++  + M  + ++W  LL  C+L  D ++AE   ++L+ +   N G++V L
Sbjct: 463 AGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQL 522

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+Y+   RWD+   VR  M  + +KK+PG+S+IE+ G +H+F   DKSH    +IY KL
Sbjct: 523 SNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKL 582

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +++  +++  G+   T  V  D+ EEEKE  L YHSEKLAVA GLIST     I+V KNL
Sbjct: 583 EDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNL 642

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH+V+KLISK+  REI+VRD  RFH F +G+CSC DYW
Sbjct: 643 RVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 170/342 (49%), Gaps = 3/342 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +  Y++ LF     P+   +N+++ G  ++      +  +  + +        T    LK
Sbjct: 60  QTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLK 119

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC R  +    + +HS V++ GF  D    T+LL +Y+  G +  A K+FDE+  R + +
Sbjct: 120 ACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVT 179

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W AL +G        EA+DLFK+M   GV KP+   ++  L+AC H+G    G+ I +Y+
Sbjct: 180 WTALFSGYTTSGRHREAIDLFKKMVEMGV-KPDSYFIVQVLSACVHVGDLDSGEWIVKYM 238

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            E  +  N  V   ++++YAKCG ++KA  VFD++   K +VTW+TM+  +A +      
Sbjct: 239 EEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMIQGYASNSFPKEG 297

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           +ELF QM +  +KPD  S +  L +C   G +D G    + +       N+    +++D+
Sbjct: 298 IELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDM 357

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             + G +    ++ K +    D+V+    +      G V+++
Sbjct: 358 YAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLS 398


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 322/559 (57%), Gaps = 38/559 (6%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVL------------RGLAHSSKPTNAVLWYRQMLRG 102
           L  LA A  LF +I  P    +N +L            R L  +S P   V+ +  M+ G
Sbjct: 62  LGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRL-FASMPVRDVVSWNTMVSG 120

Query: 103 SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL------------------ADAL 144
             +S A+      +A A  LA+     +  + +  GF                    DA+
Sbjct: 121 LSKSGAVE-----EAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAV 175

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           L T ++  Y  +G +V A + F+ M VR++ SWNA++AG  + + A +A+ LF+ M  E 
Sbjct: 176 LWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREA 235

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
             +PN  T+   L  C +L A   G +IH++  +  L  N+ V  +++ MY KCG L  A
Sbjct: 236 NVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSA 295

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
            ++F  +  R  +V WN M+  +A HGDG  A+ LFE+M   GV+P+ ++++A L AC H
Sbjct: 296 CKLFGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIH 354

Query: 325 AGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
            GL D G+R F  M    G++P + HY  +VDLL RAG+L+ A D+++S+        + 
Sbjct: 355 TGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYG 414

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443
           TLL AC++Y ++E AE+A+ KL+E    + G +V L+N+YA   +WDDV RVR+ MK+  
Sbjct: 415 TLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNA 474

Query: 444 VKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIG 503
           V K PG+S+IE+ GV+H+F ++D+ H +   I+EKL ++  ++K  GY      VLHD+ 
Sbjct: 475 VVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVD 534

Query: 504 EEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
           E  K   L  HSEKLA++FGLIST+   ++++FKNLR+C DCH+  K+ISK+ +REII+R
Sbjct: 535 ETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILR 594

Query: 564 DRVRFHRFKDGACSCKDYW 582
           D  RFH F+ G CSC DYW
Sbjct: 595 DTTRFHHFRGGHCSCGDYW 613



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 114/279 (40%), Gaps = 43/279 (15%)

Query: 149 LLDVYAK-VGEIVSAKKVFD-------------------------------EMGVRDIAS 176
           LL  YA+ +G +  A+ +FD                                M VRD+ S
Sbjct: 54  LLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVS 113

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN +++GL++     EA  +F  M +      N +    +  AC      ++     E+ 
Sbjct: 114 WNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMV---SGFACS-----RDMSAAEEWF 165

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           R      + V+  A++  Y   G + KA E F+ +  R +LV+WN +V  +  +     A
Sbjct: 166 RNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVR-NLVSWNAVVAGYVKNSHADDA 224

Query: 297 LELFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           L LF  M R A V+P+  +  + L  C++   +  G ++        +  N+    S+V 
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVS 284

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           +  + G L  AC +   +    D+V W  ++     +GD
Sbjct: 285 MYCKCGDLSSACKLFGEMHT-RDVVAWNAMISGYAQHGD 322


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/536 (38%), Positives = 317/536 (59%), Gaps = 20/536 (3%)

Query: 65  FRQINAP-STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
            R+ N P     + AV+ G +       A+  +RQM+      + +T    L ACA + A
Sbjct: 319 MRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGA 378

Query: 124 LFETLQIHSHVLRHGFLA----------DALLGTTLLDVYAKVGEIVSAKKVFDEMGV-- 171
             + ++IH++ L++  L           D ++   L+D+Y+K     +A+ +FD++ +  
Sbjct: 379 FSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEE 438

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKME--GVFKPNEVTVLGALAACGHLGAWKEG 229
           R++ +W  +I G AQ   +++A+ LF  M  E  GV  PN  T+   L AC HL A + G
Sbjct: 439 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV-APNAYTISCILMACAHLAAIRIG 497

Query: 230 DKIHEYI-REERLDMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
            +IH Y+ R  + D +   V N +I+MY+KCG +D A  VFD++  +KS ++W +M+  +
Sbjct: 498 KQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGY 556

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPN 346
            +HG G  AL++F++M +AG  PDD+++L  L AC+H G+VD G+  F+SM A+ G+ P 
Sbjct: 557 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPR 616

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
            +HY   +DLL R GRL +A   VK + M    V+W  LL AC+++ +VE+AE A  KLV
Sbjct: 617 AEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLV 676

Query: 407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSD 466
           EM + N G + L+SN+YA   RW DV R+R  MK   +KK PG S+++       FF  D
Sbjct: 677 EMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGD 736

Query: 467 KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIS 526
           +SH    +IY  L+ ++ +IK  GY   T+  LHD+ EEEK N L  HSEKLA+A+GL++
Sbjct: 737 RSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLT 796

Query: 527 TSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           T     I++ KNLR+C DCH     ISK+ + EI+VRD  RFH FK+G+CSC  YW
Sbjct: 797 TFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 197/454 (43%), Gaps = 95/454 (20%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTN 91
           F+S +F   + +  +     L E   A  +F +I     +D   +N+++     SS    
Sbjct: 148 FESNVFICNALVAMYSRCGSLEE---ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 204

Query: 92  AVLWYRQMLRGSH------RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           A+  + +M    H      RSD ++    L AC  + A+ +T ++H + +R+G   D  +
Sbjct: 205 ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFV 264

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME-- 203
           G  L+D YAK G + +A KVF+ M  +D+ SWNA++AG +Q      A +LFK M+ E  
Sbjct: 265 GNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENI 324

Query: 204 ------------------------GVFK--------PNEVTVLGALAACGHLGAWKEGDK 231
                                    VF+        PN VT++  L+AC  LGA+ +G +
Sbjct: 325 PLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGME 384

Query: 232 IHEYIREERL----------DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC-RKSLVTW 280
           IH Y  +  L          D +++V NA+IDMY+KC     A  +FD+I    +++VTW
Sbjct: 385 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 444

Query: 281 NTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVR----- 333
             M+   A +GD   AL+LF +M     GV P+  +    L AC H   +  G +     
Sbjct: 445 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYV 504

Query: 334 ----------------LFNSMANCGVKPNMKH------------YGSVVDLLGRAGRLQE 365
                           L N  + CG     +H            + S++   G  GR  E
Sbjct: 505 LRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSE 564

Query: 366 ACDI---VKSVSMGTDMVLWQTLLGACQLYGDVE 396
           A DI   ++      D + +  +L AC   G V+
Sbjct: 565 ALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVD 598



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 155/318 (48%), Gaps = 9/318 (2%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           YA  +  ++       +N ++R      +  +A+    +MLR   R D  T    LKAC 
Sbjct: 69  YALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACG 128

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---GVRDIAS 176
            + +       H  +  +GF ++  +   L+ +Y++ G +  A  +FDE+   G+ D+ S
Sbjct: 129 ELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVIS 188

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKP-NE----VTVLGALAACGHLGAWKEGDK 231
           WN++++   + + A  A+DLF +M +    KP NE    ++++  L ACG L A  +  +
Sbjct: 189 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 248

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +H         ++V V NA+ID YAKCGL++ A +VF N+   K +V+WN MV  ++  G
Sbjct: 249 VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF-NMMEFKDVVSWNAMVAGYSQSG 307

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
           +   A ELF+ M +  +  D V++ A +   +  G   + + +F  M   G  PN     
Sbjct: 308 NFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTII 367

Query: 352 SVVDLLGRAGRLQEACDI 369
           SV+      G   +  +I
Sbjct: 368 SVLSACASLGAFSQGMEI 385



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 138/319 (43%), Gaps = 46/319 (14%)

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI-AGLAQGNLASEAVDLF 197
           F++   LGT ++  Y   G    A  V + +       WN LI   + QG L S A+++ 
Sbjct: 47  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDS-AINVS 105

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
            RM   G  + +  T+   L ACG L +++ G   H  I     + NV +CNA++ MY++
Sbjct: 106 CRMLRAGT-RLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR 164

Query: 258 CGLLDKAFEVFDNIKCR--KSLVTWNTMVMAFAVHGDGPRALELFEQMG------RAGVK 309
           CG L++A  +FD I  R    +++WN++V A     +   AL+LF +M           +
Sbjct: 165 CGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNER 224

Query: 310 PDDVSYLAALCACN-----------HAGLVDDGV--------RLFNSMANCGVKP----- 345
            D +S +  L AC            H   + +G          L ++ A CG+       
Sbjct: 225 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKV 284

Query: 346 -NMKHYGSVVDL------LGRAGRLQEACDIVKSV---SMGTDMVLWQTLLGACQLYGDV 395
            NM  +  VV          ++G  + A ++ K++   ++  DMV W  ++      G  
Sbjct: 285 FNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCS 344

Query: 396 EMAEIASRKLVEMGS-NNC 413
             A    R+++  GS  NC
Sbjct: 345 HEALNVFRQMIFSGSLPNC 363


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/593 (37%), Positives = 344/593 (58%), Gaps = 21/593 (3%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAH-LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           L+   +    ++   +KQ+ A  L T          + + I++ Y+      L YA  +F
Sbjct: 23  LIHLLNEPTTITMPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVF 82

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTN---AVLWYRQMLRGSHRS---DALTCSFALKACA 119
                P++  +N ++R  A S+   +   A+  Y+ M+    ++   D  T    LKACA
Sbjct: 83  HHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACA 142

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
              +L E  Q+H+HVL+HGF +D  +  +L+  YA  G +  A+K+F +M  R+  SWN 
Sbjct: 143 YTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNI 202

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I   A+G +   A+ +F   +M+ V  P+  T+   ++AC  LGA   G  +H YI + 
Sbjct: 203 MIDSYAKGGIFDTALRMFG--EMQRVHDPDGYTMQSVISACAGLGALSLGLWVHAYILK- 259

Query: 240 RLDMN----VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           + D N    V+V   ++DMY K G L+ A +VF+++  R  L  WN+M++  A+HG+   
Sbjct: 260 KCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFR-DLNAWNSMILGLAMHGEAKA 318

Query: 296 ALELFEQMGRA-GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSV 353
           AL  + +M +   + P+ ++++  L ACNH G+VD+G+  F+ M     V+P ++HYG +
Sbjct: 319 ALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCL 378

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC-QLYGDVEMAEIASRKLVEMGSNN 412
           VDL  RAGR+ EA ++V  +S+  D V+W++LL AC + Y  VE++E  ++++ E   + 
Sbjct: 379 VDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSV 438

Query: 413 C--GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
           C  G +VLLS +YA+  RW+DVG +RK M  + V K PG S IE+ GV+H+FF  D +H 
Sbjct: 439 CSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHP 498

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTS-CVLHDIGEEEKENALCYHSEKLAVAFGLISTSE 529
           K   IY+ + EI  K++  GY    S   + D   + K N L  HSE+LA+AFG++++  
Sbjct: 499 KSENIYKVVTEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSKP 558

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
              I+VFKNLR+C DCH V KLIS++YN EIIVRDR RFH FKDG CSC DYW
Sbjct: 559 DVPIRVFKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/526 (39%), Positives = 301/526 (57%), Gaps = 39/526 (7%)

Query: 94  LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153
           L+ +  + G  R+ A   S  L AC+ V AL +   +HSH+L  G  ++  + T L+++Y
Sbjct: 295 LYQKLDMEGFKRTKATFVSI-LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMY 353

Query: 154 AKVGEIVSAKKVF----------------------------------DEMGVRDIASWNA 179
           AK G +  A+KVF                                  D +G RD  SWNA
Sbjct: 354 AKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNA 413

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I    Q   A  A+ +F+ M      KP+ VT +  L AC  LG   E   +H  I E 
Sbjct: 414 MITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISES 473

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            L+ NVVV N +I+MYA+CG L++A  +F   K  K++V+W  MV AF+ +G    AL+L
Sbjct: 474 ELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAMVAAFSQYGRYAEALDL 532

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLG 358
           F++M   GVKPDDV+Y + L  C H G ++ G R F  MA    + P   H+ ++VDLLG
Sbjct: 533 FQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLG 592

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           R+GRL +A ++++S+    D V W T L AC+++G +E+ E A+ ++ E+  ++   ++ 
Sbjct: 593 RSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIA 652

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           +SN+YAA+  W+ V  VRK M+ R +KK+PG S+IEV G +H+F +  K H +  EI E+
Sbjct: 653 MSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEE 712

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIST-SEATSIQVFK 537
           L  +   ++  GY   T  VLHD+ E EKE  L YHSEK+A+AFGL+S+      I+V K
Sbjct: 713 LTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVK 772

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF-KDGACSCKDYW 582
           NLR+C DCH   K I+++  R+IIVRD  RFHRF  DG CSC DYW
Sbjct: 773 NLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 205/422 (48%), Gaps = 46/422 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ++L  CSS      IH +   + L +   FQS    + + ++  YA      +  A  +F
Sbjct: 115 SVLGACSSLAQGREIHNRVFYSGLDS---FQS----LANALVTMYA--RFGSVGDAKRMF 165

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           + +       +NAV+   + S   + A+  +++M +   + ++ T    +   +    L 
Sbjct: 166 QSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLP 224

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E  +IH+ ++ +GF  D ++ T L+++Y K G    A++VFD+M  RD+ SWN +I    
Sbjct: 225 EGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV 284

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
                 EA++L++++ MEG FK  + T +  L AC  + A  +G  +H +I E  LD  V
Sbjct: 285 LNGDFHEALELYQKLDMEG-FKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEV 343

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL---------------------------- 277
            V  A+++MYAKCG L++A +VF+ +K R ++                            
Sbjct: 344 AVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRL 403

Query: 278 -----VTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDG 331
                ++WN M+  +  +G    A+++F +M G AG+KPD V+++A L AC   G + + 
Sbjct: 404 GSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEV 463

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             L   ++   ++ N+    +++++  R G L+EA  +  +    T +V W  ++ A   
Sbjct: 464 KALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKT-VVSWTAMVAAFSQ 522

Query: 392 YG 393
           YG
Sbjct: 523 YG 524



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 151/296 (51%), Gaps = 9/296 (3%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           + D +T    L +C+    + E   +H  +    F  D ++G  L+ +Y K   +V A+ 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 165 VFDEMG--VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
           VF+ M    R++ SWNA+IA  AQ   ++EA+ L+ RM ++G+   + VT +  L AC  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGL-GTDHVTFVSVLGACSS 122

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           L    +G +IH  +    LD    + NA++ MYA+ G +  A  +F +++ R    +WN 
Sbjct: 123 LA---QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDE-TSWNA 178

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           +++A +  GD   AL +F++M +  VKP+  +Y+  +   +   ++ +G ++   +   G
Sbjct: 179 VILAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG 237

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              ++    +++++ G+ G   EA ++   +    DMV W  ++G   L GD   A
Sbjct: 238 FDTDLVVATALINMYGKCGSSHEAREVFDKMKK-RDMVSWNVMIGCYVLNGDFHEA 292



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 126/255 (49%), Gaps = 6/255 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACA 119
           A  +F ++ +  T  +NA++     +     A+  +R+M   +  + DA+T    L+ACA
Sbjct: 396 ARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACA 455

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            +  L E   +H+ +      ++ ++  TL+++YA+ G +  A+++F     + + SW A
Sbjct: 456 SLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTA 515

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE- 238
           ++A  +Q    +EA+DLF+ M +EGV KP++VT    L  C H G+ ++G +    + E 
Sbjct: 516 MVAAFSQYGRYAEALDLFQEMDLEGV-KPDDVTYTSILFVCTHGGSLEQGWRYFTDMAEL 574

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD---GPR 295
             L        A++D+  + G L  A E+ +++      V W T + A  +HG    G  
Sbjct: 575 HALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEA 634

Query: 296 ALELFEQMGRAGVKP 310
           A E   ++  +   P
Sbjct: 635 AAERVYELDPSSTAP 649


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/509 (39%), Positives = 310/509 (60%), Gaps = 4/509 (0%)

Query: 76   FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
            +NA++ G   S+K   A+  +  M       D +T + A+KA   ++ L +  QI ++ +
Sbjct: 1067 WNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAI 1126

Query: 136  RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
            + GF  D  + + +LD+Y K G++ +A ++F E+   D  +W  +I+G  +      A+ 
Sbjct: 1127 KLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALS 1186

Query: 196  LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
            ++  M++ GV +P+E T    + A   L A ++G +IH  + +    ++  V  +++DMY
Sbjct: 1187 VYHLMRVSGV-QPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMY 1245

Query: 256  AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
             KCG +  A+ VF  +  RK +V WN M++  A HG    AL LF  M   G++PD V++
Sbjct: 1246 CKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTF 1304

Query: 316  LAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            +  L AC+H+GL  +  + F++M    G+ P ++HY  +VD LGRAGR+QEA +++ S+ 
Sbjct: 1305 IGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMP 1364

Query: 375  MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
                  +++ LLGAC+  GD E A+  + KL+ +  ++   +VLLSN+YAA  +WDDV  
Sbjct: 1365 FKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTD 1424

Query: 435  VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG-YAA 493
             R  MK ++VKK PGFS+I+V   +H F   D+SH +   IYEK++++M +I+E G Y  
Sbjct: 1425 ARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVP 1484

Query: 494  GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
             T   L D+ EEEKE AL YHSEKLA+AFGLIST  + +I+V KNLR+C DCH  IK IS
Sbjct: 1485 DTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCIS 1544

Query: 554  KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            K+  REI++RD  RFH F++G CSC DYW
Sbjct: 1545 KLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 150/293 (51%), Gaps = 8/293 (2%)

Query: 23   KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
            KQ+QA+    G F + L+ V S +++ Y      ++  A  LF +I+ P    +  ++ G
Sbjct: 1119 KQIQAYAIKLG-FNNDLW-VSSGVLDMYI--KCGDMPNALELFGEISRPDEVAWTTMISG 1174

Query: 83   LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
               +    +A+  Y  M     + D  T +  +KA + + AL +  QIH++V++  +  D
Sbjct: 1175 YIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLD 1234

Query: 143  ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
              +GT+L+D+Y K G +  A +VF +M VR +  WNA++ GLAQ     EA++LF+ M+ 
Sbjct: 1235 HFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQS 1294

Query: 203  EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGLL 261
             G+ +P++VT +G L+AC H G + E  K  + + +   +   +   + ++D   + G +
Sbjct: 1295 NGI-QPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRI 1353

Query: 262  DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
             +A  V  ++  + S   +  ++ A    GD   A  + +++    + P D S
Sbjct: 1354 QEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKL--LALDPSDSS 1404



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 160/343 (46%), Gaps = 6/343 (1%)

Query: 59   AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
            AYA  +F      +   +N  L    H+ +   A+  ++ +LR +   D++T    L A 
Sbjct: 845  AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 119  ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
                 L    QIH+ V++  F     +  +L+++Y+K G + +A+K F      D+ SWN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 179  ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC--GHLGAW-KEGDKIHEY 235
             +I+  AQ NL  EA+  F+ +  +G+ KP++ T+   L AC  G  G +   G ++H Y
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGL-KPDQFTLASVLRACSTGDEGEYFTLGSQVHVY 1023

Query: 236  IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
              +  +  +  V  A+ID+Y+K G +D+A E   + K    L +WN ++  +       +
Sbjct: 1024 AIKCGIINDSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIMFGYIKSNKSRK 1082

Query: 296  ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
            ALE F  M   G+  D+++   A+ A      +  G ++       G   ++     V+D
Sbjct: 1083 ALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLD 1142

Query: 356  LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +  + G +  A ++   +S   D V W T++      GD + A
Sbjct: 1143 MYIKCGDMPNALELFGEISR-PDEVAWTTMISGYIENGDEDHA 1184



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 7/186 (3%)

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H+ ++  G L D  L   L+ +Y+K G + SA++VFD+   RD+ +WN+++A  AQ   +
Sbjct: 634 HARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADS 693

Query: 191 S-----EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           S     E   LF  ++  G F    +T+   L  C   G  +  + +H Y  +   ++++
Sbjct: 694 SYENVLEGFRLFGLLREFG-FSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDL 752

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V  A++++Y K GL+ +A  +FD +  R + V WN M+ A+  +     AL  F    R
Sbjct: 753 FVSGALVNIYCKYGLVGQARLLFDKMPERDA-VLWNVMLKAYVENSFQDEALRFFSAFHR 811

Query: 306 AGVKPD 311
           +G  PD
Sbjct: 812 SGFXPD 817



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 34/262 (12%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +H + ++ GF  D  +   L+++Y K G +  A+ +FD+M  RD   WN ++    + + 
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 190 ASEAVDLFKRMKMEGVFKP---NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
             EA+  F      G F P   N   V+G + +       +  +++  Y           
Sbjct: 799 QDEALRFFSAFHRSG-FXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAY----------- 846

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
                + M+      D+   +F           WN  +  F   G    A++ F+ + R+
Sbjct: 847 ----AMKMFP----FDQGSNIF----------AWNKKLTEFLHAGQIVAAIDCFKTLLRS 888

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            +  D V+ +  L A   A  +D G ++   +      P +    S++++  +AG +  A
Sbjct: 889 TIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAA 948

Query: 367 CDIVKSVSMGTDMVLWQTLLGA 388
                + S   D++ W T++ +
Sbjct: 949 EKTFIN-SPELDLISWNTMISS 969


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/550 (37%), Positives = 322/550 (58%), Gaps = 26/550 (4%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFAL 115
           ++  A  LF +I  P    +N +L    H++   +A L++ QM ++ +   + +   F+ 
Sbjct: 52  KIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQ 111

Query: 116 KACA-RVLALFETLQIHSHVLRHGFLA------DALLGTTLLDV---------------Y 153
                +   LF  + + + V  +  ++      D  L   L +V               +
Sbjct: 112 NGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGF 171

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
            K G+I  A+K F+EM ++++ +WNA+IAG  +   A   + LFKRM +E  F+PN  ++
Sbjct: 172 MKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRM-VESGFRPNPSSL 230

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
              L  C +L A K G ++H+ I +  +  N+    +++ MY KCG L+ A+++F  +  
Sbjct: 231 SSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLF-LVMP 289

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
           +K +VTWN M+  +A HG G +AL LF++M   G+KPD ++++A L ACNHAG VD G+ 
Sbjct: 290 QKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIE 349

Query: 334 LFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            FNSM  + GV+    HY  VVDLLGR G+L EA D++K +       ++ TLLGAC+++
Sbjct: 350 YFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIH 409

Query: 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSY 452
            ++E+AE A++ L+ +   +   +V L+N+YAA  RWD V  VR++MK+  V K PG+S+
Sbjct: 410 KNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSW 469

Query: 453 IEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALC 512
           IEV  V+H+F + D+ H +   I+EKL+E+  K++  GY       LHD+GEE+K+  L 
Sbjct: 470 IEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILL 529

Query: 513 YHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
            HSEKLA+A+GLI     T I+VFKNLR+C DCH   K IS +  R IIVRD  RFH F+
Sbjct: 530 RHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFR 589

Query: 573 DGACSCKDYW 582
            G CSC DYW
Sbjct: 590 QGECSCGDYW 599



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 132/266 (49%), Gaps = 11/266 (4%)

Query: 41  PVRSKIIEFYAL----SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWY 96
           PVRS ++ + A+        ++  A   F ++   +   +NA++ G   + +  N +  +
Sbjct: 157 PVRS-VVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLF 215

Query: 97  RQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV 156
           ++M+    R +  + S  L  C+ + AL    Q+H  + +     +   GT+LL +Y K 
Sbjct: 216 KRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKC 275

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
           G++  A K+F  M  +D+ +WNA+I+G AQ     +A+ LF +M+ EG+ KP+ +T +  
Sbjct: 276 GDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGM-KPDWITFVAV 334

Query: 217 LAACGHLGAWKEG-DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
           L+AC H G    G +  +  +R+  ++        V+D+  + G L +A ++   +  + 
Sbjct: 335 LSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKP 394

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFE 301
               + T++ A  +H    + LEL E
Sbjct: 395 HSAIFGTLLGACRIH----KNLELAE 416



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 124/301 (41%), Gaps = 58/301 (19%)

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA--QGNLASEAVDLFKRMKMEGVFKPNE 210
           + + G++ SA +VF+ M V+   +WN+++AG +  +G +   A  LF R+    +F  N 
Sbjct: 15  HIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKV-ARQLFDRIPEPDIFSYNI 73

Query: 211 V-----------------------------TVLGALAACGHLGAWKE------------- 228
           +                             T++   +  G +   +E             
Sbjct: 74  MLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSW 133

Query: 229 GDKIHEYIREERLDM-----------NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
              I  Y+    LD+           +VV   A+I  + K G ++ A + F+ +   K+L
Sbjct: 134 NAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPM-KNL 192

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           VTWN M+  +  +      L+LF++M  +G +P+  S  + L  C++   +  G ++   
Sbjct: 193 VTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQL 252

Query: 338 MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
           +    V  N+    S++ +  + G L++A  +   V    D+V W  ++     +G  E 
Sbjct: 253 ICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFL-VMPQKDVVTWNAMISGYAQHGAGEK 311

Query: 398 A 398
           A
Sbjct: 312 A 312



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 11/157 (7%)

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA-VHGDGPRALELFEQ 302
           NV+  N VI  + + G L+ A  VF+++   K+ VTWN+M+  ++   G    A +LF++
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTV-KTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           +     +PD  SY   L    H   V+     F+ M    VK +   + +++    + G 
Sbjct: 63  IP----EPDIFSYNIMLACYLHNADVESARLFFDQMP---VK-DTASWNTMISGFSQNGM 114

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
           + +A ++   + +  + V W  ++      GD+++A+
Sbjct: 115 MDQARELFLVMPV-RNSVSWNAMISGYVESGDLDLAK 150


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/530 (40%), Positives = 306/530 (57%), Gaps = 4/530 (0%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSF 113
           L  L  A  LF ++       +NA + G    ++P  A+  +R M R    S +  T S 
Sbjct: 166 LGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSS 225

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           AL A A +  L    +IH +++R     D ++ + LLD+Y K G +  A+ +FD+M  RD
Sbjct: 226 ALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRD 285

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           + SW  +I    +     E   LF+ +   GV +PNE T  G L AC    A   G ++H
Sbjct: 286 VVSWTTMIHRCFEDGRREEGFLLFRDLMQSGV-RPNEYTFAGVLNACADHAAEHLGKEVH 344

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            Y+     D      +A++ MY+KCG    A  VF+ +  +  LV+W ++++ +A +G  
Sbjct: 345 GYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMH-QPDLVSWTSLIVGYAQNGQP 403

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGS 352
             AL  FE + ++G KPD V+Y+  L AC HAGLVD G+  F+S+    G+     HY  
Sbjct: 404 DEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYAC 463

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           V+DLL R+GR +EA +I+ ++ +  D  LW +LLG C+++G++E+A+ A++ L E+   N
Sbjct: 464 VIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPEN 523

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW 472
              ++ L+N+YA    W +V  VRK M N  + K PG S+IE+   +H F   D SH K 
Sbjct: 524 PATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKT 583

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
            +I+E L E+  KIKE GY   T+ VLHD+ EE+KE  L YHSEKLAV FG+IST   T 
Sbjct: 584 SDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGTP 643

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           I+VFKNLR C DCH  IK ISK+  R+I VRD  RFH F+DG+CSCKDYW
Sbjct: 644 IKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 147/317 (46%), Gaps = 33/317 (10%)

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
           R  HR  A   S  + AC R  AL    ++H+H     F+    +   LLD+YAK G +V
Sbjct: 80  RTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLV 139

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQ-------------------------------GNL 189
            A+ +FDEMG RD+ SWN +I G A+                                N 
Sbjct: 140 DAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQ 199

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             EA++LF+ M+       N+ T+  ALAA   +   + G +IH Y+    L+++ VV +
Sbjct: 200 PREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWS 259

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           A++D+Y KCG LD+A  +FD +K R  +V+W TM+      G       LF  + ++GV+
Sbjct: 260 ALLDLYGKCGSLDEARGIFDQMKDR-DVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVR 318

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           P++ ++   L AC        G  +   M + G  P      ++V +  + G  + A  +
Sbjct: 319 PNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRV 378

Query: 370 VKSVSMGTDMVLWQTLL 386
              +    D+V W +L+
Sbjct: 379 FNEMHQ-PDLVSWTSLI 394


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/509 (39%), Positives = 310/509 (60%), Gaps = 4/509 (0%)

Query: 76   FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
            +NA++ G   S+K   A+  +  M       D +T + A+KA   ++ L +  QI ++ +
Sbjct: 1067 WNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAI 1126

Query: 136  RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
            + GF  D  + + +LD+Y K G++ +A ++F E+   D  +W  +I+G  +      A+ 
Sbjct: 1127 KLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALS 1186

Query: 196  LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
            ++  M++ GV +P+E T    + A   L A ++G +IH  + +    ++  V  +++DMY
Sbjct: 1187 VYHLMRVSGV-QPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMY 1245

Query: 256  AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
             KCG +  A+ VF  +  RK +V WN M++  A HG    AL LF  M   G++PD V++
Sbjct: 1246 CKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTF 1304

Query: 316  LAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            +  L AC+H+GL  +  + F++M    G+ P ++HY  +VD LGRAGR+QEA +++ S+ 
Sbjct: 1305 IGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMP 1364

Query: 375  MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
                  +++ LLGAC+  GD E A+  + KL+ +  ++   +VLLSN+YAA  +WDDV  
Sbjct: 1365 FKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTD 1424

Query: 435  VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG-YAA 493
             R  MK ++VKK PGFS+I+V   +H F   D+SH +   IYEK++++M +I+E G Y  
Sbjct: 1425 ARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVP 1484

Query: 494  GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
             T   L D+ EEEKE AL YHSEKLA+AFGLIST  + +I+V KNLR+C DCH  IK IS
Sbjct: 1485 DTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCIS 1544

Query: 554  KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            K+  REI++RD  RFH F++G CSC DYW
Sbjct: 1545 KLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 150/293 (51%), Gaps = 8/293 (2%)

Query: 23   KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
            KQ+QA+    G F + L+ V S +++ Y      ++  A  LF +I+ P    +  ++ G
Sbjct: 1119 KQIQAYAIKLG-FNNDLW-VSSGVLDMYI--KCGDMPNALELFGEISRPDEVAWTTMISG 1174

Query: 83   LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
               +    +A+  Y  M     + D  T +  +KA + + AL +  QIH++V++  +  D
Sbjct: 1175 YIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLD 1234

Query: 143  ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
              +GT+L+D+Y K G +  A +VF +M VR +  WNA++ GLAQ     EA++LF+ M+ 
Sbjct: 1235 HFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQS 1294

Query: 203  EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGLL 261
             G+ +P++VT +G L+AC H G + E  K  + + +   +   +   + ++D   + G +
Sbjct: 1295 NGI-QPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRI 1353

Query: 262  DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
             +A  V  ++  + S   +  ++ A    GD   A  + +++    + P D S
Sbjct: 1354 QEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKL--LALDPSDSS 1404



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 160/343 (46%), Gaps = 6/343 (1%)

Query: 59   AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
            AYA  +F      +   +N  L    H+ +   A+  ++ +LR +   D++T    L A 
Sbjct: 845  AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 119  ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
                 L    QIH+ V++  F     +  +L+++Y+K G + +A+K F      D+ SWN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 179  ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC--GHLGAW-KEGDKIHEY 235
             +I+  AQ NL  EA+  F+ +  +G+ KP++ T+   L AC  G  G +   G ++H Y
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGL-KPDQFTLASVLRACSTGDEGEYFTLGSQVHVY 1023

Query: 236  IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
              +  +  +  V  A+ID+Y+K G +D+A E   + K    L +WN ++  +       +
Sbjct: 1024 AIKCGIINDSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIMFGYIKSNKSRK 1082

Query: 296  ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
            ALE F  M   G+  D+++   A+ A      +  G ++       G   ++     V+D
Sbjct: 1083 ALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLD 1142

Query: 356  LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +  + G +  A ++   +S   D V W T++      GD + A
Sbjct: 1143 MYIKCGDMPNALELFGEISR-PDEVAWTTMISGYIENGDEDHA 1184



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 7/186 (3%)

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H+ ++  G L D  L   L+ +Y+K G + SA++VFD+   RD+ +WN+++A  AQ   +
Sbjct: 634 HARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADS 693

Query: 191 S-----EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           S     E   LF  ++  G F    +T+   L  C   G  +  + +H Y  +   ++++
Sbjct: 694 SYENVLEGFRLFGLLREFG-FSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDL 752

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V  A++++Y K GL+ +A  +FD +  R + V WN M+ A+  +     AL  F    R
Sbjct: 753 FVSGALVNIYCKYGLVGQARLLFDKMPERDA-VLWNVMLKAYVENSFQDEALRFFSAFHR 811

Query: 306 AGVKPD 311
           +G  PD
Sbjct: 812 SGFFPD 817



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/261 (19%), Positives = 105/261 (40%), Gaps = 32/261 (12%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +H + ++ GF  D  +   L+++Y K G +  A+ +FD+M  RD   WN ++    + + 
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 190 ASEAVDLFKRMKMEGVFK--PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
             EA+  F      G F    N   V+G + +       +  +++  Y            
Sbjct: 799 QDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAY------------ 846

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
               + M+      D+   +F           WN  +  F   G    A++ F+ + R+ 
Sbjct: 847 ---AMKMFP----FDQGSNIF----------AWNKKLTEFLHAGQIVAAIDCFKTLLRST 889

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
           +  D V+ +  L A   A  +D G ++   +      P +    S++++  +AG +  A 
Sbjct: 890 IGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAE 949

Query: 368 DIVKSVSMGTDMVLWQTLLGA 388
               + S   D++ W T++ +
Sbjct: 950 KTFIN-SPELDLISWNTMISS 969


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/526 (39%), Positives = 313/526 (59%), Gaps = 4/526 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  LF ++   +T  F  +++G A S +   A+  + ++ R     +  T +  L+A
Sbjct: 89  LCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREV-LPNQFTFASVLQA 147

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA +  L    QIH HV++ G  +D  +   L+DVYAK G + ++ ++F E   R+  +W
Sbjct: 148 CATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTW 207

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N +I G  Q     +A+ LF  M +E   +  EVT   AL AC  L A + G +IH    
Sbjct: 208 NTVIVGHVQLGDGEKALRLFLNM-LEYRVQATEVTYSSALRACASLAALEPGLQIHSLTV 266

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +   D ++VV NA+IDMYAKCG +  A  VFD +  ++  V+WN M+  +++HG G  AL
Sbjct: 267 KTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMN-KQDEVSWNAMISGYSMHGLGREAL 325

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
            +F++M    VKPD ++++  L AC +AGL+D G   F SM  + G++P ++HY  +V L
Sbjct: 326 RIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWL 385

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           LGR G L +A  ++  +     +++W+ LLGAC ++ D+E+  I++++++EM   +    
Sbjct: 386 LGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATH 445

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSN+YA  +RWD+V  VRK MK + VKK PG S+IE  G +H F   D SH + R I 
Sbjct: 446 VLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVIN 505

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
             L+ +  K K+ GY    + VL D+ +EEKE  L  HSE+LA++FG+I T   + I++ 
Sbjct: 506 GMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIM 565

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLRIC DCH  IK ISKV  REI+VRD  RFH F++G CSC DYW
Sbjct: 566 KNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 137/264 (51%), Gaps = 4/264 (1%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +H  +L+ G   D      LL++Y K   +  A K+FDEM  R+  S+  LI G A+   
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             EA++LF R+  E +  PN+ T    L AC  +     G++IH ++ +  L  +V V N
Sbjct: 120 FLEAIELFVRLHREVL--PNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSN 177

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           A++D+YAKCG ++ + E+F     R   VTWNT+++     GDG +AL LF  M    V+
Sbjct: 178 ALMDVYAKCGRMENSMELFAESPHRND-VTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQ 236

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
             +V+Y +AL AC     ++ G+++ +         ++    +++D+  + G +++A  +
Sbjct: 237 ATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDA-RL 295

Query: 370 VKSVSMGTDMVLWQTLLGACQLYG 393
           V  +    D V W  ++    ++G
Sbjct: 296 VFDLMNKQDEVSWNAMISGYSMHG 319



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 5/184 (2%)

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
           AL  C        G  +H  I +    +++   N +++MY K   L  A ++FD +  R 
Sbjct: 44  ALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERN 103

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
           + +++ T++  +A       A+ELF ++ R  V P+  ++ + L AC     ++ G ++ 
Sbjct: 104 T-ISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQACATMEGLNLGNQIH 161

Query: 336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT-LLGACQLYGD 394
             +   G+  ++    +++D+  + GR++ + ++        D V W T ++G  QL GD
Sbjct: 162 CHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRND-VTWNTVIVGHVQL-GD 219

Query: 395 VEMA 398
            E A
Sbjct: 220 GEKA 223


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/529 (39%), Positives = 312/529 (58%), Gaps = 6/529 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR---GSHRSDALTCSFA 114
           LA A ALF ++       ++A++       +P  A+  YR+MLR   GS   +  T S A
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSA 168

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L A           ++H HV+R G  ADA++ + L D+YAK G +  A+ VFD M VRD+
Sbjct: 169 LAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDV 228

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW A++          E   LF RM   G+  PNE T  G L AC    + K G ++H 
Sbjct: 229 VSWTAMLDRYFDAGRDGEGFRLFVRMMRSGIL-PNEFTYAGVLRACAEFTSEKLGKQVHG 287

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            + + R   +    +A++ MY+K G +  A  VF  +  +  LV+W  M+  +A +G   
Sbjct: 288 RMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMP-KPDLVSWTAMISGYAQNGQPD 346

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSV 353
            AL  F+ +  +G +PD V+++  L AC HAGLVD G+ +F+S+ +  G++    HY  V
Sbjct: 347 EALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACV 406

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           +DLL R+G  + A D++ ++ +  +  LW +LLG C+++ +V +A  A+  L E+   N 
Sbjct: 407 IDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENP 466

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
             +V L+N+YA+   +D+V  +R+ M+ R + K+P  S+IEVG  +H F   DKSH +  
Sbjct: 467 ATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAE 526

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           EIY  L ++  K++E GY A T  VLHD+ +E+K+  + YHSE+LAVAFG+I+T + + I
Sbjct: 527 EIYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPI 586

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +VFKNLRIC DCH  IKLISK+  REIIVRD  RFH FK+G+CSC+DYW
Sbjct: 587 KVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/527 (39%), Positives = 310/527 (58%), Gaps = 4/527 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  LF  +       +N V+     +     AV  + ++ +   +++ +T    L  
Sbjct: 258 LGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNV 317

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
              + +L +   IH  V   G+  D ++ T L+ +Y +      A K+F +MG +D+ +W
Sbjct: 318 YTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITW 377

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
             +    AQ     EA+ LF+ M++EG  +P   T++  L  C HL A ++G +IH +I 
Sbjct: 378 TVMCVAYAQNGFRKEALQLFQEMQLEGR-RPTSATLVAVLDTCAHLAALQKGRQIHSHII 436

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           E    M +VV  A+I+MY KCG + +A  VF+ +  R  LV WN+M+ A+A HG     L
Sbjct: 437 ENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILV-WNSMLGAYAQHGYYDETL 495

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
           +LF QM   G K D VS+++ L A +H+G V DG + F +M  +  + P  + YG VVDL
Sbjct: 496 QLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDL 555

Query: 357 LGRAGRLQEACDIVKSVS-MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LGRAGR+QEA DIV  +S    D +LW TLLGAC+ +   + A+ A+ +++E   ++ G 
Sbjct: 556 LGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGA 615

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +V+LSN+YAA   WD V R+RK M++R VKK PG S IE+   +H+F   D+SH +   I
Sbjct: 616 YVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPI 675

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
           Y +LD +  +++  GY   T  +LHD+ +E KE+ L YHSE+LA+AFGL+ST   T ++V
Sbjct: 676 YAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRV 735

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH   K ISK+  REI+VRD  RFH FKDG CSCKDYW
Sbjct: 736 IKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 180/381 (47%), Gaps = 11/381 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ALLQ+CSS   V H   +++  H+   G  Q+ L  V   +I+ YA      +  A  +F
Sbjct: 10  ALLQRCSSAKNVDHG--RRVHWHVCDRGFEQNNL--VCGHLIQMYA--QCGSVPEAQQVF 63

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             +       +  ++           A+  + QM         +T    L ACA   +L 
Sbjct: 64  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 123

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           + ++IH  +L+ GF  D  +GT L+++Y K G +  A   F  +  RD+ SW A+IA   
Sbjct: 124 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV 183

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q +  + A  L++RM+++GV  PN++T+     A G      EG  I+  +    ++ +V
Sbjct: 184 QHDQFALARWLYRRMQLDGVV-PNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDV 242

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V N+ ++M+   GLL  A  +F+++  R  +VTWN ++  +  + +   A+ LF ++ +
Sbjct: 243 RVMNSAMNMFGNAGLLGDARRLFEDMVDR-DVVTWNIVITFYVQNENFGEAVRLFGRLQQ 301

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            G+K +D++++  L        +  G  +   +   G   ++    +++ L GR     +
Sbjct: 302 DGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQ 361

Query: 366 ACDIVKSVSMGT-DMVLWQTL 385
           A  I   V MG+ D++ W  +
Sbjct: 362 AWKIF--VDMGSKDVITWTVM 380



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 99/200 (49%), Gaps = 2/200 (1%)

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
           FKP+    +  L  C        G ++H ++ +   + N +VC  +I MYA+CG + +A 
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
           +VF+ ++ RK +  W  M+  +   GD  RAL +F QM    V P  V+Y+A L AC   
Sbjct: 61  QVFEILE-RKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACAST 119

Query: 326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
             + DG+ +   +   G + ++    +++++  + G ++ A D  K +    D+V W  +
Sbjct: 120 ESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEH-RDVVSWTAM 178

Query: 386 LGACQLYGDVEMAEIASRKL 405
           + AC  +    +A    R++
Sbjct: 179 IAACVQHDQFALARWLYRRM 198


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/535 (39%), Positives = 317/535 (59%), Gaps = 20/535 (3%)

Query: 66  RQINAP-STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           R+ N P     + AV+ G +       A+  +RQM+      + +T    L ACA + A 
Sbjct: 213 RKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAF 272

Query: 125 FETLQIHSHVLRHGFLA----------DALLGTTLLDVYAKVGEIVSAKKVFDEMGV--R 172
            + ++IH++ L++  L           D ++   L+D+Y+K     +A+ +FD++ +  R
Sbjct: 273 SQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEER 332

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKME--GVFKPNEVTVLGALAACGHLGAWKEGD 230
           ++ +W  +I G AQ   +++A+ LF  M  E  GV  PN  T+   L AC HL A + G 
Sbjct: 333 NVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV-APNAYTISCILMACAHLAAIRIGK 391

Query: 231 KIHEYI-REERLDMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           +IH Y+ R  + D +   V N +I+MY+KCG +D A  VFD++  +KS ++W +M+  + 
Sbjct: 392 QIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYG 450

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNM 347
           +HG G  AL++F++M +AG  PDD+++L  L AC+H G+VD G+  F+SM A+ G+ P  
Sbjct: 451 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 510

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
           +HY   +DLL R GRL +A   VK + M    V+W  LL AC+++ +VE+AE A  KLVE
Sbjct: 511 EHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVE 570

Query: 408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDK 467
           M + N G + L+SN+YA   RW DV R+R  MK   +KK PG S+++       FF  D+
Sbjct: 571 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDR 630

Query: 468 SHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
           SH    +IY  L+ ++ +IK  GY   T+  LHD+ EEEK N L  HSEKLA+A+GL++T
Sbjct: 631 SHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTT 690

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
                I++ KNLR+C DCH     ISK+ + EI+VRD  RFH FK+G+CSC  YW
Sbjct: 691 FPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 197/454 (43%), Gaps = 95/454 (20%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTN 91
           F+S +F   + +  +     L E   A  +F +I     +D   +N+++     SS    
Sbjct: 41  FESNVFICNALVAMYSRCGSLEE---ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 97

Query: 92  AVLWYRQMLRGSH------RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           A+  + +M    H      RSD ++    L AC  + A+ +T ++H + +R+G   D  +
Sbjct: 98  ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFV 157

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME-- 203
           G  L+D YAK G + +A KVF+ M  +D+ SWNA++AG +Q      A +LFK M+ E  
Sbjct: 158 GNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENI 217

Query: 204 ------------------------GVFK--------PNEVTVLGALAACGHLGAWKEGDK 231
                                    VF+        PN VT++  L+AC  LGA+ +G +
Sbjct: 218 PLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGME 277

Query: 232 IHEYIREERL----------DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC-RKSLVTW 280
           IH Y  +  L          D +++V NA+IDMY+KC     A  +FD+I    +++VTW
Sbjct: 278 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 337

Query: 281 NTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVR----- 333
             M+   A +GD   AL+LF +M     GV P+  +    L AC H   +  G +     
Sbjct: 338 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYV 397

Query: 334 ----------------LFNSMANCGVKPNMKH------------YGSVVDLLGRAGRLQE 365
                           L N  + CG     +H            + S++   G  GR  E
Sbjct: 398 LRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSE 457

Query: 366 ACDI---VKSVSMGTDMVLWQTLLGACQLYGDVE 396
           A DI   ++      D + +  +L AC   G V+
Sbjct: 458 ALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVD 491



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 140/279 (50%), Gaps = 9/279 (3%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           MLR   R D  T    LKAC  + +       H  +  +GF ++  +   L+ +Y++ G 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 159 IVSAKKVFDEM---GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP-NE---- 210
           +  A  +FDE+   G+ D+ SWN++++   + + A  A+DLF +M +    KP NE    
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
           ++++  L ACG L A  +  ++H         ++V V NA+ID YAKCGL++ A +VF N
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF-N 179

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
           +   K +V+WN MV  ++  G+   A ELF+ M +  +  D V++ A +   +  G   +
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 239

Query: 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
            + +F  M   G  PN     SV+      G   +  +I
Sbjct: 240 ALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI 278



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 107/248 (43%), Gaps = 43/248 (17%)

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           +  T+   L ACG L +++ G   H  I     + NV +CNA++ MY++CG L++A  +F
Sbjct: 9   DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 68

Query: 269 DNIKCR--KSLVTWNTMVMAFAVHGDGPRALELFEQMG------RAGVKPDDVSYLAALC 320
           D I  R    +++WN++V A     +   AL+LF +M           + D +S +  L 
Sbjct: 69  DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 128

Query: 321 ACN-----------HAGLVDDGV--------RLFNSMANCGVKP------NMKHYGSVVD 355
           AC            H   + +G          L ++ A CG+        NM  +  VV 
Sbjct: 129 ACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 188

Query: 356 L------LGRAGRLQEACDIVKSV---SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
                    ++G  + A ++ K++   ++  DMV W  ++      G    A    R+++
Sbjct: 189 WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 248

Query: 407 EMGS-NNC 413
             GS  NC
Sbjct: 249 FSGSLPNC 256


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/543 (36%), Positives = 323/543 (59%), Gaps = 6/543 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + ++  YA     +++ A  +F ++   +   +  ++ G A   +   A+     M +
Sbjct: 185 VGTSLVGMYA--KCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQ 242

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                + +T +  L+ C    AL    ++H ++++ G+  +  +  +L+ +Y K G +  
Sbjct: 243 AEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEE 302

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+K+F ++  RD+ +W A++ G AQ     EA++LF+RM+ +G+ KP+++T    L +C 
Sbjct: 303 ARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGI-KPDKMTFTSVLTSCS 361

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
                +EG +IH+ +     +++V + +A++ MYAKCG +D A  VF+ +   +++V W 
Sbjct: 362 SPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMS-ERNVVAWT 420

Query: 282 TMVMAF-AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-A 339
            ++    A HG    ALE F+QM + G+KPD V++ + L AC H GLV++G + F SM  
Sbjct: 421 AIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYL 480

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
           + G+KP ++HY   VDLLGRAG L+EA +++ S+       +W  LL AC+++ DVE  E
Sbjct: 481 DYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGE 540

Query: 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
            A+  ++++  ++ G +V LS++YAA  R++D  +VR+ M+ RDV K PG S+IEV G +
Sbjct: 541 RAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKV 600

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H F   DKSH +  +IY +L ++  +IKE GY   T  VLHD+ EE+KE  L  HSE+LA
Sbjct: 601 HVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLA 660

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           + +GL+ T     I++ KNLR+C DCH   K ISKV  REII RD  RFH F DG CSC 
Sbjct: 661 ITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCG 720

Query: 580 DYW 582
           D+W
Sbjct: 721 DFW 723



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 182/389 (46%), Gaps = 15/389 (3%)

Query: 4   LNALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
              LLQ+C+   ++     +H   L++ +      ++ L  + +K            L  
Sbjct: 50  FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKC---------GSLTD 100

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  I   +   + A++      +K   A   Y  M     + D +T    L A   
Sbjct: 101 ARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTN 160

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              L    ++H  ++  G   +  +GT+L+ +YAK G+I  A+ +FD +  +++ +W  L
Sbjct: 161 PELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLL 220

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IAG AQ      A++L + M+   V  PN++T    L  C    A + G K+H YI +  
Sbjct: 221 IAGYAQQGQVDVALELLETMQQAEV-APNKITFASILQGCTTPAALEHGKKVHRYIIQSG 279

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
               + V N++I MY KCG L++A ++F ++  R  +VTW  MV  +A  G    A+ LF
Sbjct: 280 YGRELWVVNSLITMYCKCGGLEEARKLFSDLPHR-DVVTWTAMVTGYAQLGFHDEAINLF 338

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M + G+KPD +++ + L +C+    + +G R+   + + G   ++    ++V +  + 
Sbjct: 339 RRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKC 398

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           G + +A  +   +S   ++V W  ++  C
Sbjct: 399 GSMDDASLVFNQMSE-RNVVAWTAIITGC 426



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 147/278 (52%), Gaps = 4/278 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ CAR+ +L +  ++H+ +L+ G   +  L  TLL +YAK G +  A++VFD +  R+I
Sbjct: 54  LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNI 113

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW A+I     GN   EA   ++ MK+ G  KP++VT +  L A  +    + G K+H 
Sbjct: 114 VSWTAMIEAFVAGNKNLEAFKCYETMKLAGC-KPDKVTFVSLLNAFTNPELLQLGQKVHM 172

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            I E  L++   V  +++ MYAKCG + KA  +FD +   K++VTW  ++  +A  G   
Sbjct: 173 EIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLP-EKNVVTWTLLIAGYAQQGQVD 231

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            ALEL E M +A V P+ +++ + L  C     ++ G ++   +   G    +    S++
Sbjct: 232 VALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLI 291

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL-GACQL 391
            +  + G L+EA  +   +    D+V W  ++ G  QL
Sbjct: 292 TMYCKCGGLEEARKLFSDLPH-RDVVTWTAMVTGYAQL 328



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 3/207 (1%)

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           EA+ +   M ++G    ++V   G L  C  L + ++G ++H  I +  +  N  + N +
Sbjct: 30  EALGIMNTMILQGTRVYSDV-FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 88

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           + MYAKCG L  A  VFD+I+ R ++V+W  M+ AF        A + +E M  AG KPD
Sbjct: 89  LSMYAKCGSLTDARRVFDSIRDR-NIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPD 147

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
            V++++ L A  +  L+  G ++   +   G++   +   S+V +  + G + +A  I  
Sbjct: 148 KVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFD 207

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +    ++V W  L+      G V++A
Sbjct: 208 RLPE-KNVVTWTLLIAGYAQQGQVDVA 233


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/437 (42%), Positives = 289/437 (66%), Gaps = 3/437 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           +TL+D +AK G++  A ++FD+M  +++ SW  ++ G ++   + +A+ +F +M  EGV 
Sbjct: 285 STLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGV- 343

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           +PN  T++ AL+AC  +G  + G +IH+YI++  L +   +  A++DMYAKCG ++ A E
Sbjct: 344 RPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASE 403

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF   + +KS+ TW  M+  +A+HG   +A+  F+QM  AG+KPD+V +LA L AC H+G
Sbjct: 404 VFGETE-QKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSG 462

Query: 327 LVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
            VD G+  F+SM  +  ++P+MKHY  +VD+LGR+G+L+EA   ++ + M  D V+W  L
Sbjct: 463 QVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGAL 522

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
             AC+ +   +MA+ A  KL+++   + G+++ LSN YAA  +W+D  RVR  M+NR V 
Sbjct: 523 FCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVH 582

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K  G+S IEV G +H+F + D  H   + I  KL+EIM    + GY  GT  VLH++ +E
Sbjct: 583 KNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQE 642

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE+ L  H EKLA+AF LI TS   +I++ KNL++C DCH ++K  SK+  REI++RD 
Sbjct: 643 EKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDM 702

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH FKDG+CSC+D+W
Sbjct: 703 KRFHHFKDGSCSCRDHW 719



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 186/390 (47%), Gaps = 51/390 (13%)

Query: 14  NGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPST 73
           +G+ + + + Q+ A +       S L  + +++I   +L     + ++ A+F      + 
Sbjct: 89  HGSKTILQLHQIHAQIIIHNLSSSSL--ITTQLISSSSLR--KSINHSLAVFNHHKPKNL 144

Query: 74  NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH 133
             FNA++RGL  +S   NA+  +R MLR   + D LT  F LK+ A + +    + IH  
Sbjct: 145 FTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCM 204

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-DIAS----WNALIAGLAQGN 188
           +LR G   D+ +  +L+D+Y KV ++ SA KVFDE   R D  S    WN LI G  +  
Sbjct: 205 ILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAG 264

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
              +AV LFK M       P +  V           +W                      
Sbjct: 265 SMKKAVKLFKAM-------PKKENV-----------SW---------------------- 284

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           + +ID +AK G +D+A E+FD +   K++V+W TMV  F+ +GD  +AL +F +M   GV
Sbjct: 285 STLIDGFAKNGDMDRAMELFDQMP-EKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGV 343

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           +P+  + ++AL AC   G ++ G+R+   + + G+        ++VD+  + G ++ A +
Sbjct: 344 RPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASE 403

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           +       + +  W  ++    ++G  E A
Sbjct: 404 VFGETEQKS-IRTWTVMIWGWAIHGHSEQA 432



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 2/235 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           ++  A  LF Q+   +   +  ++ G + +     A+  + +ML    R +A T   AL 
Sbjct: 296 DMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALS 355

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA++  L   L+IH ++  +G      LGT L+D+YAK G I SA +VF E   + I +
Sbjct: 356 ACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRT 415

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W  +I G A    + +A+  FK+M   G+ KP+EV  L  L AC H G    G    + +
Sbjct: 416 WTVMIWGWAIHGHSEQAIACFKQMMFAGI-KPDEVVFLALLTACMHSGQVDIGLNFFDSM 474

Query: 237 REER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           R +  ++ ++     ++DM  + G L +A    + +      V W  +  A   H
Sbjct: 475 RLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAH 529


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/501 (41%), Positives = 299/501 (59%), Gaps = 34/501 (6%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF 166
           D +    AL ACA +L +     IHS  L+ G  +   L   L+ +Y+K G+I+ A+K+F
Sbjct: 375 DEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLF 434

Query: 167 DE-------------------------------MGVRDIASWNALIAGLAQGNLASEAVD 195
           DE                               M  +D+ SW+++I+G AQ +L  E + 
Sbjct: 435 DEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLA 494

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF+ M+M G FKP+E T++  ++AC  L A ++G  +H YI+   L +NV++   +IDMY
Sbjct: 495 LFQEMQMSG-FKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMY 553

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            KCG ++ A EVF  +   K + TWN +++  A++G    +L++F  M +  V P+++++
Sbjct: 554 MKCGCVETALEVFYGM-IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITF 612

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +  L AC H GLVD+G   F SM  +  ++PN+KHYG +VDLLGRAG+LQEA +++  + 
Sbjct: 613 MGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMP 672

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           M  D+  W  LLGAC+ +GD EM     RKL+E+  ++ G  VLLSN+YA+  +WDDV  
Sbjct: 673 MTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLE 732

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R  M    V K+PG S IE  GVIH+F   DK+H     I + L E+  K+K  GY   
Sbjct: 733 IRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPD 792

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
            + VL D+ EEEKE+ L  HSEKLA+AFGLI+ S  T I++ KNLRIC DCH   KLISK
Sbjct: 793 INEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISK 852

Query: 555 VYNREIIVRDRVRFHRFKDGA 575
            + R+I+VRDR RFH F+ G 
Sbjct: 853 AFCRKIVVRDRHRFHHFEQGG 873



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 133/254 (52%), Gaps = 8/254 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A A+F  +       +++++ G A +      +  +++M     + D  T    + ACAR
Sbjct: 461 AKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACAR 520

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL +   +H+++ R+G   + +LGTTL+D+Y K G + +A +VF  M  + I++WNAL
Sbjct: 521 LAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNAL 580

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD-KIHEYIREE 239
           I GLA   L   ++D+F  MK   V  PNE+T +G L AC H+G   EG    +  I + 
Sbjct: 581 ILGLAMNGLVESSLDMFSNMKKCHV-TPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDH 639

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
           ++  NV     ++D+  + G L +A E+ + +     + TW  ++ A   HGD     E+
Sbjct: 640 KIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDS----EM 695

Query: 300 FEQMGRAGV--KPD 311
             ++GR  +  +PD
Sbjct: 696 GRRVGRKLIELQPD 709



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 133/282 (47%), Gaps = 34/282 (12%)

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
             +++ ++   G +V A K+FDEM  +D+ +W+ALIA   Q  +  EA+  F  M   GV
Sbjct: 313 SNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGV 372

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIH---------EYIR------------------- 237
              +EV  + AL+AC +L     G  IH          YI                    
Sbjct: 373 MV-DEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVAR 431

Query: 238 ---EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +E   ++++  N++I  Y KC L+D A  +FD++   K +V+W++M+  +A +    
Sbjct: 432 KLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMP-EKDVVSWSSMISGYAQNDLFD 490

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
             L LF++M  +G KPD+ + ++ + AC     ++ G  +   +   G+  N+    +++
Sbjct: 491 ETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLI 550

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
           D+  + G ++ A ++   + +   +  W  L+    + G VE
Sbjct: 551 DMYMKCGCVETALEVFYGM-IEKGISTWNALILGLAMNGLVE 591



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 110/256 (42%), Gaps = 17/256 (6%)

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q N    A  L+K M +      +  T    + AC    +  E  ++H ++ +   D +V
Sbjct: 190 QTNSPHFAFTLYKSM-LSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDV 248

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V N +I+ ++ C  +  A  VF+      S V+WN+++  +   G+   A  ++ QM  
Sbjct: 249 YVRNTLINCFSVCSNMTDACRVFNESSVLDS-VSWNSILAGYIEIGNVEEAKHIYHQMPE 307

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
             +    ++  + +      GLV +  +LF+ M    ++ +M  + +++    +    +E
Sbjct: 308 RSI----IASNSMIVLFGMRGLVVEACKLFDEM----LEKDMVTWSALIACFQQNEMYEE 359

Query: 366 ACDI---VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN- 421
           A      +  + +  D V+  + L AC     V M ++     +++G+ +   ++ L N 
Sbjct: 360 AIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTES---YINLQNA 416

Query: 422 LYAAYERWDDVGRVRK 437
           L   Y +  D+   RK
Sbjct: 417 LIYMYSKCGDIMVARK 432


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/563 (37%), Positives = 314/563 (55%), Gaps = 36/563 (6%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSF 113
           L  +  A +LF  +   +   +NAV+ G   +     A+ ++ +ML  S  + D  T + 
Sbjct: 241 LGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITS 300

Query: 114 ALKACARVLALFETLQIHSHVLRH-----GFLADALLG---------------------- 146
            L ACA +  +    Q+H+++LR      G + +AL+                       
Sbjct: 301 VLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMAD 360

Query: 147 ------TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
                 T LL+ Y K+G++  A+++FD M  RD+ +W A+I G  Q     EA++LF+ M
Sbjct: 361 LNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLM 420

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
              G  +PN  TV   L+ C  L   + G +IH        + +  V N+++ MYA+ G 
Sbjct: 421 IRSGP-EPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGS 479

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L  A  VFD +  RK  VTW +M++A A HG G  A+ LFE+M R GVKPD ++++  L 
Sbjct: 480 LPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLS 539

Query: 321 ACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC H G VD+G R F  + +  G+ P M HY  +VDLL RAG   EA + ++ + +  D 
Sbjct: 540 ACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDA 599

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           + W +LL AC+++ + ++AE+A+ KL+ +   N G +  LSN+Y+A  RW+D  ++ K  
Sbjct: 600 IAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRR 659

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           K++ VKK  GFS+  +G  +H F   D  H +   +Y    ++   IK+ G+      VL
Sbjct: 660 KDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVL 719

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           HD+ +E KE  L  HSEKLA+AFGL+ST E T++++ KNLR+C DCH  IK ISKV +RE
Sbjct: 720 HDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKVADRE 779

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           II+RD  RFH FKDG CSCKDYW
Sbjct: 780 IILRDATRFHHFKDGFCSCKDYW 802



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 169/414 (40%), Gaps = 67/414 (16%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + ++  YA S    LA A A+F ++       +  ++ GL    +   A+  +  M+   
Sbjct: 100 NSLLSLYAKS--GRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDG 157

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
                 T +  L +CA   A     ++HS V++ G  +   +  ++L++Y K G+  +A+
Sbjct: 158 LSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETAR 217

Query: 164 KVFDEMGVRD-------------------------------IASWNALIAGLAQGNLASE 192
            VF+ M  R                                I SWNA+IAG  Q  L ++
Sbjct: 218 AVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAK 277

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL----------- 241
           A+  F RM       P+E T+   L+AC +LG    G ++H YI   R+           
Sbjct: 278 ALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALI 337

Query: 242 ----------------------DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
                                 D+NV+   A+++ Y K G +  A E+FD +   + +V 
Sbjct: 338 SMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFD-VMSNRDVVA 396

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           W  M++ +  +G    A+ELF  M R+G +P+  +  A L  C     ++ G ++     
Sbjct: 397 WTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAI 456

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
               + +     S+V +  R+G L  A  +   V    + V W +++ A   +G
Sbjct: 457 RSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHG 510



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 179/404 (44%), Gaps = 41/404 (10%)

Query: 3   NLNALLQKCSSNGAVS---HIHIKQLQAHLTTTGQFQSKLFPVRSK-------------- 45
            + ++L  C++ G VS    +H   L++ +   GQ  + L  + +K              
Sbjct: 297 TITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQA 356

Query: 46  ------IIEFYAL----SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLW 95
                 +I F AL      L ++ +A  +F  ++      + A++ G   +     A+  
Sbjct: 357 VMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMEL 416

Query: 96  YRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK 155
           +R M+R     ++ T +  L  CA +  L    QIH   +R      + +  +++ +YA+
Sbjct: 417 FRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYAR 476

Query: 156 VGEIVSAKKVFDEMGVR-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
            G +  A++VFD +  R +  +W ++I  LAQ  L  +AV LF+ M   GV KP+ +T +
Sbjct: 477 SGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGV-KPDRITFV 535

Query: 215 GALAACGHLGAWKEGDKIHEYIREER---LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           G L+AC H+G   EG +  + ++++     +M+   C  ++D+ A+ GL  +A E    +
Sbjct: 536 GVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYAC--MVDLLARAGLFSEAQEFIQQM 593

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA-GLVDD 330
                 + W +++ A  VH +   A    E++    + P +    +AL     A G  +D
Sbjct: 594 PVEPDAIAWGSLLSACRVHKNADLAELAAEKL--LSIDPGNSGAYSALSNVYSACGRWND 651

Query: 331 GVRLFNSMANCGVKP----NMKHYGSVVDLLGRAGRLQEACDIV 370
             +++    +  VK     +  H G+ V + G    L    D V
Sbjct: 652 AAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTV 695



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 148/317 (46%), Gaps = 47/317 (14%)

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
           +LL +YAK G +  A+ VF EM  RD  SW  ++ GL +     EA+ +F  M  +G+  
Sbjct: 101 SLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGL-S 159

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           P + T+   L++C    A   G K+H ++ +  L   V V N+V++MY KCG  + A  V
Sbjct: 160 PTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAV 219

Query: 268 FDNIKCR------------------------------KSLVTWNTMVMAFAVHGDGPRAL 297
           F+ +  R                              +++V+WN ++  +  +G   +AL
Sbjct: 220 FERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKAL 279

Query: 298 ELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
             F +M   + + PD+ +  + L AC + G+V  G ++   +    ++  M + G V + 
Sbjct: 280 WFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYI----LRSRMPYIGQVTNA 335

Query: 357 L----GRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
           L     ++G ++ A  +++   M   +++ +  LL      GD++ A    R++ ++ SN
Sbjct: 336 LISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHA----REMFDVMSN 391

Query: 412 NCGDFVLLSNLYAAYER 428
              D V  + +   YE+
Sbjct: 392 R--DVVAWTAMIVGYEQ 406


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/538 (38%), Positives = 315/538 (58%), Gaps = 33/538 (6%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N +L   A       A+    +ML+   R D +T   A+ A A+++ LF     H +V+
Sbjct: 301 YNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVI 360

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL--------------- 180
           R+G      +G  ++D+Y K G+   A +VFD M  + + SWN+L               
Sbjct: 361 RNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWE 420

Query: 181 ----------------IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
                           I+GL Q +L  +A++LF+ M+ EG+ K + VT++G  +ACG+LG
Sbjct: 421 VFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGI-KADRVTMMGIASACGYLG 479

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A +    +H YI +  +  ++ +  A++DM+A+CG    A +VF+ +   + +  W   +
Sbjct: 480 APELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT-ERDVSAWTAAI 538

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
              A+ G+G  A  LF QM   GVKPD V ++  L AC+H G V+ G+ +F+ M + G+ 
Sbjct: 539 GTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGIS 598

Query: 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRK 404
           P ++HYG +VDLLGRAG L+EA D++KS+ M  + V+W +LL AC+++ +VEMA  A+ +
Sbjct: 599 PQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAER 658

Query: 405 LVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFT 464
           + E+     G  VLLSN+YA+  +W DV RVR  ++ + V+KVPG S ++V GVIH+F +
Sbjct: 659 INELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTS 718

Query: 465 SDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGL 524
            D+SH +   I   L E+  +  + G+    S VL D+ E+EKE  L  HSEKLA+AFGL
Sbjct: 719 GDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGL 778

Query: 525 ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           I+T  +  I+V KNLR+C DCH   K+ S +YNREIIVRD  RFH F+ G CSC DYW
Sbjct: 779 IATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 194/393 (49%), Gaps = 29/393 (7%)

Query: 21  HIKQLQAHLTTTG--QFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF-- 76
            +KQL   +T  G  Q  S L  + +   E  +   L+    A  LF++        F  
Sbjct: 40  QLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFML 99

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N+++RG + +     A+L Y +ML      +  T  F L  C ++ A  E +Q+H  V++
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G   D  +   L+  YA+ G +    KVF+ M  R++ SW +LI G A+G+   EAV L
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSL 219

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           F  M   G+ +P+ VT++  ++AC  L     G+++  YI E  L +N V+ NA++DMY 
Sbjct: 220 FFEMVEAGI-RPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYM 278

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG +D A  +FD    R +LV +NT++  +A  G    AL + ++M + G +PD V+ L
Sbjct: 279 KCGAIDAAKRLFDECVDR-NLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTML 337

Query: 317 AALCACN-----------HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           +A+ A             H  ++ +G+  ++S+ N            ++D+  + G+ + 
Sbjct: 338 SAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNV-----------IIDMYMKCGKPEM 386

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           AC +   +S  T +V W +L       GDVE A
Sbjct: 387 ACRVFDLMSNKT-VVSWNSLTAGFIRNGDVESA 418



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 6/253 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F QI   +   +N ++ GL   S   +A+  +R+M     ++D +T      AC  
Sbjct: 418 AWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGY 477

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + A      +H+++ ++G   D  L T L+D++A+ G+  SA +VF++M  RD+++W A 
Sbjct: 478 LGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAA 537

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I  +A       A  LF +M ++GV KP+ V  +  L AC H G  ++G  I   + +  
Sbjct: 538 IGTMAMEGNGEGATGLFNQMLIQGV-KPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHG 596

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           +   +     ++D+  + GLL +AF++  ++    + V W +++ A  VH +   A    
Sbjct: 597 ISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAA 656

Query: 301 EQMG-----RAGV 308
           E++      RAGV
Sbjct: 657 ERINELAPQRAGV 669


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/526 (39%), Positives = 301/526 (57%), Gaps = 39/526 (7%)

Query: 94  LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153
           L+ +  + G  R+ A   S  L AC+ V AL +   +HSH+L  G  ++  + T L+++Y
Sbjct: 295 LYQKLDMEGFKRTKATFVSI-LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMY 353

Query: 154 AKVGEIVSAKKVF----------------------------------DEMGVRDIASWNA 179
           AK G +  A+KVF                                  D +G RD   WNA
Sbjct: 354 AKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNA 413

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I    Q   A  A+ +F+ M      KP+ VT +  L AC  LG   E   +H  I E 
Sbjct: 414 MITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISES 473

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            L+ NVVV N +I+MYA+CG L++A  +F   K  K++V+W  MV AF+ +G    AL+L
Sbjct: 474 ELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAMVAAFSQYGRYAEALDL 532

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLG 358
           F++M   GVKPDDV+Y + L  C H G ++ G R F  MA   G+ P   H+ ++VDLLG
Sbjct: 533 FQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLG 592

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           R+GRL +A ++++S+    D V W T L AC+++G +E+ E A+ ++ E+  ++   ++ 
Sbjct: 593 RSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIA 652

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           +SN+YAA+  W+ V  VRK M+ R +KK+PG S+IEV G +H+F +  K H +  EI E+
Sbjct: 653 MSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEE 712

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIST-SEATSIQVFK 537
           L  +   ++  GY   T  VLHD+ E EKE  L YHSEK+A+AFGL+S+      I+V K
Sbjct: 713 LTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVK 772

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF-KDGACSCKDYW 582
           NLR+C DCH   K I+++  R+II+RD  RFHRF  DG CSC DYW
Sbjct: 773 NLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 206/422 (48%), Gaps = 46/422 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ++L  CSS      IH +   + L +   FQS    + + ++  YA      +  A  +F
Sbjct: 115 SVLGACSSLAQGREIHNRVFYSGLDS---FQS----LANALVTMYA--RFGSVGDAKRMF 165

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           + +       +NAV+   + S   + A+  +++M +   + ++ T    +   +    L 
Sbjct: 166 QSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLP 224

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E  +IH+ ++ +GF +D ++ T L+++Y K G    A++VFD+M  RD+ SWN +I    
Sbjct: 225 EGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV 284

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q     EA++L++++ MEG FK  + T +  L AC  + A  +G  +H +I E  LD  V
Sbjct: 285 QNGDFHEALELYQKLDMEG-FKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEV 343

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL---------------------------- 277
            V  A+++MYAKCG L++A +VF+ +K R ++                            
Sbjct: 344 AVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRL 403

Query: 278 -----VTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDG 331
                + WN M+  +  +G    A+++F +M G AG+KPD V+++A L AC   G + + 
Sbjct: 404 GSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEV 463

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             L   ++   ++ N+    +++++  R G L+EA  +  +    T +V W  ++ A   
Sbjct: 464 KALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKT-VVSWTAMVAAFSQ 522

Query: 392 YG 393
           YG
Sbjct: 523 YG 524



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 175/377 (46%), Gaps = 45/377 (11%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           + D +T    L +C+    + E   +H  +    F  D ++G  L+ +Y K   +V A+ 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 165 VFDEMG--VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
           VF+ M    R++ SWNA+IA  AQ   ++EA+ L+ RM ++G+   + VT +  L AC  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGL-GTDHVTFVSVLGACSS 122

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           L    +G +IH  +    LD    + NA++ MYA+ G +  A  +F +++ R    +WN 
Sbjct: 123 LA---QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDE-TSWNA 178

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           +++A +  GD   AL +F++M +  +KP+  +Y+  +   +   ++ +G ++   +   G
Sbjct: 179 VILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG 237

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG----------ACQLY 392
              ++    +++++ G+ G   EA ++   +    DMV W  ++G          A +LY
Sbjct: 238 FDSDLVVATALINMYGKCGSSHEAREVFDKMKK-RDMVSWNVMIGCYVQNGDFHEALELY 296

Query: 393 GDVEMAEIASRK-------------------------LVEMG-SNNCGDFVLLSNLYAAY 426
             ++M      K                         ++E G  +       L N+YA  
Sbjct: 297 QKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKC 356

Query: 427 ERWDDVGRVRKAMKNRD 443
              ++  +V  AMKNRD
Sbjct: 357 GSLEEARKVFNAMKNRD 373



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 126/255 (49%), Gaps = 6/255 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACA 119
           A  +F ++ +  T  +NA++     +     A+  +R+M   +  + DA+T    L+ACA
Sbjct: 396 ARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACA 455

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            +  L E   +H+ +      ++ ++  TL+++YA+ G +  A+++F     + + SW A
Sbjct: 456 SLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTA 515

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE- 238
           ++A  +Q    +EA+DLF+ M +EGV KP++VT    L  C H G+ ++G +    + E 
Sbjct: 516 MVAAFSQYGRYAEALDLFQEMDLEGV-KPDDVTYTSILFVCTHGGSLEQGWRYFTDMAEL 574

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD---GPR 295
             L        A++D+  + G L  A E+ +++      V W T + A  +HG    G  
Sbjct: 575 HGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEA 634

Query: 296 ALELFEQMGRAGVKP 310
           A E   ++  +   P
Sbjct: 635 AAERVYELDPSSTAP 649


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/528 (38%), Positives = 317/528 (60%), Gaps = 3/528 (0%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
            +L  A  LF ++   +   +NA++ GL +      ++ ++  M R     D        
Sbjct: 183 GDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVF 242

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           + CA +  +    Q+H++V+R G   D  +G++L  +Y + G +   + V   +    I 
Sbjct: 243 RCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIV 302

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           S N +IAG  Q   +  A++ F  M+  GV   + VT + A+++C  L A  +G +IH  
Sbjct: 303 SCNTIIAGRTQNGDSEGALEYFCMMRSVGV-AADVVTFVSAISSCSDLAALAQGQQIHGQ 361

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           + +  +D  V V   ++ MY++CG L  +  VF    C       + M+ A+  HG G +
Sbjct: 362 VMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGY-CGSDTFLLSAMISAYGFHGHGQK 420

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVV 354
           A+ELF+QM   G +P DV++LA L AC+H+GL ++G+  F  M    G++P++KHY  VV
Sbjct: 421 AIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVV 480

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLLGR+G L EA  ++ S+ +  D V+W+TLL AC+   + +MAE  +++++E+  ++  
Sbjct: 481 DLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSA 540

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
            +VLLSN+ A   RW DV  VRKAM++ +V+K PG S++E+ G IH+F T D+SH + +E
Sbjct: 541 SYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKE 600

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           I E L+E+M KI++ GY+   S VLHD+ +EEKE +L +HSEKLA+AF  +S  E   I+
Sbjct: 601 IDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIR 660

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V KNLR+C DCH  IKL+S+V  REI+VRD  RFH FKDG CSC+DYW
Sbjct: 661 VMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 134/276 (48%), Gaps = 4/276 (1%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L   Y K G++  A+K+FDEM  R++A+WNA++AGL       E++  F  M+ EG+  P
Sbjct: 175 LFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGM-HP 233

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           +E  +      C  L     G ++H Y+    LD ++ V +++  MY +CG L +   V 
Sbjct: 234 DEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVL 293

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
             +    S+V+ NT++     +GD   ALE F  M   GV  D V++++A+ +C+    +
Sbjct: 294 RMLP-SLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAAL 352

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
             G ++   +   GV   +     +V +  R G L ++  +      G+D  L   ++ A
Sbjct: 353 AQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYC-GSDTFLLSAMISA 411

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
              +G  + A    ++++  G+    D   L+ LYA
Sbjct: 412 YGFHGHGQKAIELFKQMMNGGAEP-SDVTFLALLYA 446



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           ++H +        +    N ++  YA  G L  A E+F+ I  R+++++WN +   +  +
Sbjct: 124 QLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP-RRNVMSWNILFGGYIKN 182

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
           GD   A +LF++M    V     ++ A +    + G  ++ +  F  M   G+ P+    
Sbjct: 183 GDLGGARKLFDEMPERNV----ATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGL 238

Query: 351 GSV 353
           GSV
Sbjct: 239 GSV 241


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/565 (37%), Positives = 341/565 (60%), Gaps = 9/565 (1%)

Query: 20  IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAV 79
           +H  Q+ A+    G   S L  V + +++ YA      + Y   +F ++       +  +
Sbjct: 400 LHGMQIHAYAMKNG-LDSDL-QVGNSLVDMYA--KFCSMKYMDCIFDKMPDKDVVSWTTI 455

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           + G A +   + A+  +R++       D +  S  L AC+ +  +    +IHS+++R G 
Sbjct: 456 IAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKG- 514

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
           L+D +L   ++DVY + G +  A ++F+ +  +D+ SW ++I+      LA+EA++LF  
Sbjct: 515 LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHL 574

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           MK  GV +P+ ++++  L+A   L A K+G +IH ++  +   +   + + ++DMYA+CG
Sbjct: 575 MKETGV-EPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCG 633

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            L+K+  VF+ I+  K LV W +M+ A+ +HG G  A++LF +M    + PD ++++A L
Sbjct: 634 TLEKSRNVFNFIR-NKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVL 692

Query: 320 CACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
            AC+H+GL+++G R   SM     ++P  +HY  +VDLLGRA  L+EA   VK + +   
Sbjct: 693 YACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPT 752

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
             +W  LLGACQ++ + E+ EIA++KL+EM   N G++VL+SN+Y+A  RW DV  VR  
Sbjct: 753 AEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMR 812

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKI-KEYGYAAGTSC 497
           MK   +KK PG S+IEVG  +H F   DKSH +  EIY KL +I  K+ KE GY A T  
Sbjct: 813 MKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKF 872

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           VLH+  EEEK   L  HSE+LA+A+G+++T E  S+++ KNLR+C DCH+  KLISK + 
Sbjct: 873 VLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFE 932

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           RE+++RD  RFH FK G CSC D W
Sbjct: 933 RELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 180/352 (51%), Gaps = 6/352 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  YA     ++  A  +F  ++   T  +N++L G   +     A+ +Y +M  
Sbjct: 319 VANALIAMYA--RFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRD 376

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              + D +     + A AR       +QIH++ +++G  +D  +G +L+D+YAK   +  
Sbjct: 377 AGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKY 436

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
              +FD+M  +D+ SW  +IAG AQ    S A++LF+ +++EG+   + + +   L AC 
Sbjct: 437 MDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGI-DLDVMMISSILLACS 495

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L       +IH YI  + L  ++V+ N ++D+Y +CG +D A  +F+ I+  K +V+W 
Sbjct: 496 GLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEF-KDVVSWT 553

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
           +M+  +  +G    ALELF  M   GV+PD +S ++ L A      +  G  +   +   
Sbjct: 554 SMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRK 613

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           G         ++VD+  R G L+++ ++   +    D+VLW +++ A  ++G
Sbjct: 614 GFVLEGSLASTLVDMYARCGTLEKSRNVFNFIR-NKDLVLWTSMINAYGMHG 664



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 191/385 (49%), Gaps = 9/385 (2%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           +++L+ C S  A+S    +Q+ AH+ T+    + +F + ++++  Y       L  A  L
Sbjct: 82  SSVLELCGSKKALSEG--QQVHAHMITSNALFNSVF-LSTRLVFMYG--KCGCLVDAEKL 136

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F  +   +   +NA++     + +P  ++  YR+M       DA T    LKAC  +   
Sbjct: 137 FDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDR 196

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-DIASWNALIAG 183
               ++H   ++ G+++   +  +++ +Y K  ++  A+++FD M  + D+ SWN++I+ 
Sbjct: 197 RYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 256

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            +    + EA+ LF  M+ +    PN  T + AL AC      K+G  IH  + +    +
Sbjct: 257 YSSNGQSIEALRLFGEMQ-KASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI 315

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           NV V NA+I MYA+ G + +A  +F N+    + ++WN+M+  F  +G    AL+ + +M
Sbjct: 316 NVFVANALIAMYARFGKMGEAANIFYNMDDWDT-ISWNSMLSGFVQNGLYHEALQFYHEM 374

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
             AG KPD V+ ++ + A   +G    G+++       G+  +++   S+VD+  +   +
Sbjct: 375 RDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSM 434

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGA 388
           +   D +       D+V W T++  
Sbjct: 435 KYM-DCIFDKMPDKDVVSWTTIIAG 458



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 171/348 (49%), Gaps = 11/348 (3%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQ 98
           V + I+  Y  +  N+L  A  LF ++  P   D   +N+++   + + +   A+  + +
Sbjct: 217 VANSIVGMY--TKCNDLNGARQLFDRM--PEKEDVVSWNSMISAYSSNGQSIEALRLFGE 272

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           M + S   +  T   AL+AC     + + + IH+ VL+  +  +  +   L+ +YA+ G+
Sbjct: 273 MQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGK 332

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           +  A  +F  M   D  SWN++++G  Q  L  EA+  +  M+  G  KP+ V V+  +A
Sbjct: 333 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ-KPDLVAVISIIA 391

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           A    G    G +IH Y  +  LD ++ V N+++DMYAK   +     +FD +   K +V
Sbjct: 392 ASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVV 450

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W T++   A +G   RALELF ++   G+  D +   + L AC+   L+     + + +
Sbjct: 451 SWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYI 510

Query: 339 ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
              G+   +   G +VD+ G  G +  A  + + +    D+V W +++
Sbjct: 511 IRKGLSDLVLQNG-IVDVYGECGNVDYAARMFELIEF-KDVVSWTSMI 556


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/548 (39%), Positives = 306/548 (55%), Gaps = 38/548 (6%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           P+   +N ++ GL  S +  +AV    +M       DA   S AL A   V  +    Q+
Sbjct: 116 PNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQV 175

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H +V++ G   DA + T L+D+Y K G      +VF E    D+AS NAL+AGL++    
Sbjct: 176 HGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQV 235

Query: 191 SEA-----------------------------------VDLFKRMKMEGVFKPNEVTVLG 215
           SEA                                   VDLF+ M+  GV +PN VT+  
Sbjct: 236 SEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGV-EPNSVTIPC 294

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            L A  ++ A   G   H +   +    +V V +A++DMYAKCG    A  +FD +  R 
Sbjct: 295 VLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSR- 353

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
           ++V+WN M+  +A+HGD   A++LF  M +   KPD V++   L AC+ AGL ++G R F
Sbjct: 354 NVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYF 413

Query: 336 NSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           N M    G+ P M+HY  +V LLGR+G+L EA D++  +    D  +W +LLG+C++YG+
Sbjct: 414 NEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGN 473

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           V +AE+A+ KL ++   N G++VLLSN+YA+ + WD V RVR  MKN  +KK  G S+IE
Sbjct: 474 VLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIE 533

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYH 514
           +   +H     D SH     I EKL+++  ++   G+A     VLHD+ E+EK+N L  H
Sbjct: 534 IKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVH 593

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SEKLAVA GLIST   T ++V KNLRIC DCH+ +K IS    REI VRD  RFH FKDG
Sbjct: 594 SEKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDG 653

Query: 575 ACSCKDYW 582
            CSC DYW
Sbjct: 654 KCSCGDYW 661



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 40/268 (14%)

Query: 114 ALKAC-ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           ALK+C A+ LA      +H+  +  G   D  + ++LL  Y ++G   +A+ VFD M  +
Sbjct: 26  ALKSCPAQPLAR----ALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEK 81

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGV--------------------------- 205
           ++  W+ALIAG +    A  A  L ++M+  GV                           
Sbjct: 82  NVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTAL 141

Query: 206 -------FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
                  F P+   V  AL+A G +     G ++H Y+ +    ++  V  A+IDMY KC
Sbjct: 142 VRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKC 201

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G  D+   VF        + + N +V   + +     AL LF +    GV+ + VS+ + 
Sbjct: 202 GRADEIVRVFHE-SSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSI 260

Query: 319 LCACNHAGLVDDGVRLFNSMANCGVKPN 346
           +  C   G   + V LF +M + GV+PN
Sbjct: 261 VACCVQNGRDLEAVDLFRTMQSIGVEPN 288



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 206 FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
           F P+   +  AL +C    A      +H       L  +  V ++++  Y + G    A 
Sbjct: 16  FPPDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAAR 72

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
            VFD +   K++V W+ ++  ++  GD   A  L EQM  AGV+P+ +++   +   N +
Sbjct: 73  SVFDRMP-EKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRS 131

Query: 326 GLVDDGVRLFNSMANCGVKPN 346
           G   D V     M + G  P+
Sbjct: 132 GRALDAVTALVRMHSEGFFPD 152


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/530 (38%), Positives = 312/530 (58%), Gaps = 38/530 (7%)

Query: 89  PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
           P   +  +R+M     + + +T S  L ACA +  L    +IH   +RHG + +  + + 
Sbjct: 246 PRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSA 305

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDI---------------------------------- 174
           L+ +YAK   +  A+ VFD M  RD+                                  
Sbjct: 306 LVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRAD 365

Query: 175 -ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
            A+WNA+I G  +   + EAV++F++M+  G FKPNE+T+   L AC      + G +IH
Sbjct: 366 EATWNAVIGGCMENGRSEEAVEMFRKMQKMG-FKPNEITISSILPACSFSENLRMGKEIH 424

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            Y+       ++    A++ MYAKCG L+ +  VFD ++ RK +V WNTM++A A+HG+G
Sbjct: 425 CYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMR-RKDVVAWNTMIIANAMHGNG 483

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGS 352
             AL LF++M  + V+P+ V++   L  C+H+ LV++GV++FNSM  +  V+P+  HY  
Sbjct: 484 KEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSC 543

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           VVD+  RAGRL EA   ++ + M      W  LL AC++Y +VE+A+I+++KL E+  NN
Sbjct: 544 VVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNN 603

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW 472
            G++V L N+    + W +  +VR  MK R + K PG S+++VG  +H F   DKS+++ 
Sbjct: 604 PGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIES 663

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
            +IY  LDE++ K+K  GY   T  VL DI +EEK  +LC HSEKLAVAFG+++ +  ++
Sbjct: 664 DKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQST 723

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           I+VFKNLRIC DCH+ IK +SKV    I+VRD +RFH FK+G CSCKD W
Sbjct: 724 IRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 170/373 (45%), Gaps = 20/373 (5%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF  I  P     + ++  L        A+  Y  +     + D      A KACA 
Sbjct: 117 ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 176

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
                   ++H    R G ++D  +G  L+  Y K   +  A++VFD++ VRD+ SW +L
Sbjct: 177 SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 236

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
            +   +     + +D+F+ M   GV KPN +TV   L AC  L   K G +IH +     
Sbjct: 237 SSCYVKCGFPRKGMDVFREMGWSGV-KPNPMTVSSILPACAELKDLKSGKEIHGFAVRHG 295

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           + +N+ VC+A++ +YAKC  + +A  VFD +   + +V+WN ++ A+  + +  +   LF
Sbjct: 296 MVVNLFVCSALVSLYAKCLSVREARMVFD-LMPHRDVVSWNGVLTAYFKNKEYEKGFSLF 354

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M R GV+ D+ ++ A +  C   G  ++ V +F  M   G KPN     S++      
Sbjct: 355 LKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSIL------ 408

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
                AC   +++ MG ++         C ++   ++ ++ S   +      CGD  L  
Sbjct: 409 ----PACSFSENLRMGKEI--------HCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSR 456

Query: 421 NLYAAYERWDDVG 433
           N++    R D V 
Sbjct: 457 NVFDMMRRKDVVA 469



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NAV+ G   + +   AV  +R+M +   + + +T S  L AC+    L    +IH +V 
Sbjct: 369 WNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVF 428

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           RH  + D    T LL +YAK G++  ++ VFD M  +D+ +WN +I   A      EA+ 
Sbjct: 429 RHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALF 488

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL---DMNVVVCNAVI 252
           LF +M +  V +PN VT  G L+ C H    +EG +I   +  + L   D N   C  V+
Sbjct: 489 LFDKMLLSRV-QPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSC--VV 545

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           D+Y++ G L++A++    +    +   W  ++ A  V+ +
Sbjct: 546 DIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKN 585



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 120/244 (49%), Gaps = 3/244 (1%)

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           LG  L+ V   VG+   A+++FD +   D  + + LI+ L    L++EA+ ++  ++  G
Sbjct: 100 LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 159

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
           + KP+    L A  AC   G      ++H+      +  +V V NA+I  Y KC  ++ A
Sbjct: 160 I-KPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGA 218

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
             VFD++  R  +V+W ++   +   G   + +++F +MG +GVKP+ ++  + L AC  
Sbjct: 219 RRVFDDLVVR-DVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAE 277

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
              +  G  +       G+  N+    ++V L  +   ++EA  +V  +    D+V W  
Sbjct: 278 LKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREA-RMVFDLMPHRDVVSWNG 336

Query: 385 LLGA 388
           +L A
Sbjct: 337 VLTA 340


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/549 (38%), Positives = 320/549 (58%), Gaps = 22/549 (4%)

Query: 53  SPLNELAYAHALFRQINAPSTN----DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDA 108
           S    L +A +LF ++   +       + AV+ G A   +   A+  +RQM     R + 
Sbjct: 441 SQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNV 500

Query: 109 LTCSFALKACARVLALFETLQIHSHVLRHGFL---------ADAL-LGTTLLDVYAKVGE 158
           +T    L AC  V AL    + H + ++  F+         AD L +   L+D+YAK   
Sbjct: 501 VTLVSLLSACVSVGALLHGKETHCYAIK--FILNLDGPDPGADDLKVINGLIDMYAKCQS 558

Query: 159 IVSAKKVFDEMGV--RDIASWNALIAGLAQGNLASEAVDLFKRM-KMEGVFKPNEVTVLG 215
              A+K+FD +    RD+ +W  +I G AQ   A+ A+ LF  M KM+   KPN+ T+  
Sbjct: 559 TEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSC 618

Query: 216 ALAACGHLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
           AL AC  L A + G ++H Y+ R     + + V N +IDMY+K G +D A  VFDN+  R
Sbjct: 619 ALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQR 678

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
            + V+W +++  + +HG G  AL +F++M +  + PD +++L  L AC+H+G+VD G+  
Sbjct: 679 NA-VSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINF 737

Query: 335 FNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           FN M+ + GV P  +HY  +VDL GRAGRL EA  ++  + M    V+W  LL AC+L+ 
Sbjct: 738 FNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHS 797

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           +VE+ E A+ +L+E+ S N G + LLSN+YA   RW DV R+R  MK   +KK PG S+I
Sbjct: 798 NVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWI 857

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           +    +  F+  D+SH + ++IYE L +++ +IK  GY   TS  LHD+ +EEK + L  
Sbjct: 858 QGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFE 917

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEKLA+A+G+++      I++ KNLRIC DCH  I  ISK+   EII+RD  RFH FK+
Sbjct: 918 HSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKN 977

Query: 574 GACSCKDYW 582
           G+CSCK YW
Sbjct: 978 GSCSCKGYW 986



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 198/411 (48%), Gaps = 21/411 (5%)

Query: 36  QSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF--NAVLRGLAHSSKPTNAV 93
           Q  LF + + +I  Y  S  N  AYA  L  ++    ++ F  N ++R   H   P +  
Sbjct: 187 QGLLFHLATNLIGTYIAS--NSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVF 244

Query: 94  LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153
             YRQM       D  T  F  KACA + +L     +H+ V R GF ++  +   ++ +Y
Sbjct: 245 TLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMY 304

Query: 154 AKVGEIVSAKKVFDEM---GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE 210
            K G +  A  +FD++   G++D+ SWN++++     + A+ A+ LF +M    +  P+ 
Sbjct: 305 GKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDV 364

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
           ++++  L AC  L A   G ++H +     L  +V V NAV+DMYAKCG +++A +VF  
Sbjct: 365 ISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQR 424

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
           +K  K +V+WN MV  ++  G    AL LFE+M    ++ D V++ A +      G   +
Sbjct: 425 MKF-KDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCE 483

Query: 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL----QEACDIVKSV------SMGTDMV 380
            + +F  M +CG +PN+    S++      G L    +  C  +K +        G D +
Sbjct: 484 ALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDL 543

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDD 431
             + + G   +Y   +  E+A RK+ +  S    D V  + +   Y +  D
Sbjct: 544 --KVINGLIDMYAKCQSTEVA-RKMFDSVSPKDRDVVTWTVMIGGYAQHGD 591



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 188/421 (44%), Gaps = 68/421 (16%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTN 91
           F S +F V + ++  Y       L +AH +F  +      D   +N+V+     +S    
Sbjct: 290 FASNVF-VCNAVVSMYG--KCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANT 346

Query: 92  AV-LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150
           A+ L+++   R     D ++    L ACA + A     Q+H   +R G + D  +G  ++
Sbjct: 347 ALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVV 406

Query: 151 DVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV----- 205
           D+YAK G++  A KVF  M  +D+ SWNA++ G +Q      A+ LF+RM  E +     
Sbjct: 407 DMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVV 466

Query: 206 -----------------------------FKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
                                         +PN VT++  L+AC  +GA   G + H Y 
Sbjct: 467 TWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYA 526

Query: 237 REERLDM--------NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAF 287
            +  L++        ++ V N +IDMYAKC   + A ++FD++  + + +VTW  M+  +
Sbjct: 527 IKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGY 586

Query: 288 AVHGDGPRALELFEQMGR--AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
           A HGD   AL+LF  M +    +KP+D +   AL AC     +      F    +  V  
Sbjct: 587 AQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALR-----FGRQVHAYVLR 641

Query: 346 NMKHYGSV--------VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
           N   YGSV        +D+  ++G +  A  IV       + V W +L+    ++G  E 
Sbjct: 642 NF--YGSVMLFVANCLIDMYSKSGDVDTA-QIVFDNMPQRNAVSWTSLMTGYGMHGRGED 698

Query: 398 A 398
           A
Sbjct: 699 A 699


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 317/527 (60%), Gaps = 3/527 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  LF ++ A +   +NA++ GL +S     ++ ++  M R   + D        +
Sbjct: 15  DLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFR 74

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            CA +  +    Q+H++V+R G   D  +G++L  +Y + G +   +     +   +I S
Sbjct: 75  CCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVS 134

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
            N  I+G  Q   A  A++ F  M+  GV + N VT + A+ +C  L A  +G +IH   
Sbjct: 135 CNTTISGRTQNGDAEGALEFFCLMRGAGV-EANAVTFVSAVTSCSDLAALAQGQQIHALA 193

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +  +D  V V  +++ MY++CG L  +  V         LV  + M+ A+  HG G +A
Sbjct: 194 IKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYS-GTDLVLCSAMISAYGFHGHGQKA 252

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVD 355
           + LF+QM  AG +P++V++L  L AC+H+GL D+G+  F  M    G++P++KHY  +VD
Sbjct: 253 VGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVD 312

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LLGR+G L EA D++ S+ +  D V+W+TLL AC+     +MAE  + +++E+  ++   
Sbjct: 313 LLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSAS 372

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +VLLSN+ A   RW+DV +VR+ M+ ++V+K PG S++E+ G IH+F T D+SH + REI
Sbjct: 373 YVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREI 432

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
            E L+E+M +I++ GYA   S V HD+ +EEKE +L +HSEKLA+AF  +S  E   I+V
Sbjct: 433 VECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRV 492

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH  IKL+SKV  REI+VRD  RFH FKDG CSC DYW
Sbjct: 493 MKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 143/279 (51%), Gaps = 10/279 (3%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L+  Y K G++ +A+K+FDEM  R++A+WNA++AGL    L  E++  F  M+ EG+ +P
Sbjct: 6   LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGM-QP 64

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL---DKAF 265
           +E  +      C  L     G ++H Y+    LD ++ V +++  MY +CG L   + A 
Sbjct: 65  DEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAAL 124

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
               ++    ++V+ NT +     +GD   ALE F  M  AGV+ + V++++A+ +C+  
Sbjct: 125 RALPSL----NIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDL 180

Query: 326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
             +  G ++       GV   +    S+V +  R G L ++  +    S GTD+VL   +
Sbjct: 181 AALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYS-GTDLVLCSAM 239

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           + A   +G  + A    ++++  G+    +   L+ LYA
Sbjct: 240 ISAYGFHGHGQKAVGLFKQMMAAGAEP-NEVTFLTLLYA 277



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N +I  Y K G L+ A ++FD +  R ++ TWN MV      G    +L  F  M R G+
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPAR-NVATWNAMVAGLTNSGLNEESLGFFFAMRREGM 62

Query: 309 KPDDVSYLAALCACNHAGLVD--DGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           +PD+   L +L  C  AGL D   G ++   +   G+  +M    S+  +  R G L++ 
Sbjct: 63  QPDEYG-LGSLFRCC-AGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDG 120


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/543 (37%), Positives = 323/543 (59%), Gaps = 6/543 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + ++  YA     ++  A  +F ++       +N ++ G A ++    A L +  M +
Sbjct: 198 VGNSLLAMYA--KFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGK 255

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA-DALLGTTLLDVYAKVGEIV 160
               +D  T    L ACA + A+ E   IH + +R+     +     +L+++Y     +V
Sbjct: 256 AGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMV 315

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
            A+++F+ +  +D  SWN++I G A+   A E++ LF+RM ++G   P++VT +  L AC
Sbjct: 316 DARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGS-GPDQVTFIAVLGAC 374

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
             + A + G  IH Y+ ++  D N +V  A++DMY+KCG L  +  VFD +   KSLV+W
Sbjct: 375 DQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMP-DKSLVSW 433

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-A 339
           + MV  + +HG G  A+ + + M    V PD+  + + L AC+HAGLV +G  +F  M  
Sbjct: 434 SAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEK 493

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
              VKP + HY  +VDLLGRAG L EA  I++++ +     +W  LL A +L+ ++++AE
Sbjct: 494 EYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAE 553

Query: 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
           I+++K+ +M       ++ LSN+YAA +RWDDV RVR  ++ + +KK PG S+IE+  ++
Sbjct: 554 ISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMV 613

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H+F   DKSH +  +IY KL+E+  ++KE GY   TS V +D+ EE KE  L  HSE+LA
Sbjct: 614 HRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLA 673

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +AF LI+T   T I++ KNLR+C DCH V KLIS++  REII+RD  RFH F  G CSC 
Sbjct: 674 IAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCG 733

Query: 580 DYW 582
           DYW
Sbjct: 734 DYW 736



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 204/389 (52%), Gaps = 9/389 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ALLQ  S     S    +QL AH+ +    ++  + + +K+  FYA   L  ++ A  +F
Sbjct: 64  ALLQ--SFTNTKSFKQGQQLHAHMISFSILENNTY-LNTKLAAFYAGCGL--MSQAEVIF 118

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             I   ++  +N ++RG A +  P  +++ YR+ML    R+D  T  F LKAC  +L + 
Sbjct: 119 DGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVE 178

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              ++HS V+  G  +D  +G +LL +YAK G++ +A+ VFD M  RD+ SWN +I+G A
Sbjct: 179 IGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYA 238

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREERLDMN 244
           +   +  A  +F  M   G+F  +  T+LG L+AC  L A KEG  IH Y +R    + N
Sbjct: 239 KNADSGTAFLVFDLMGKAGLF-ADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYN 297

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
               N++I+MY  C  +  A  +F+ ++  K  V+WN+M++ +A +GD   +L LF +M 
Sbjct: 298 KFFTNSLIEMYCNCNCMVDARRLFERVRW-KDTVSWNSMILGYARNGDAFESLRLFRRMA 356

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
             G  PD V+++A L AC+    +  G+ + + +   G   N     ++VD+  + G L 
Sbjct: 357 LDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLA 416

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            +  +   +     +V W  ++    L+G
Sbjct: 417 CSRRVFDEMP-DKSLVSWSAMVAGYGLHG 444


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/519 (39%), Positives = 310/519 (59%), Gaps = 13/519 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++A + G A       A+   RQML    + + +T    L  CA V AL    +IH + +
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392

Query: 136 RH-------GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGLAQ 186
           ++       G   + ++   L+D+YAK  ++  A+ +FD +    RD+ +W  +I G +Q
Sbjct: 393 KYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQ 452

Query: 187 GNLASEAVDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREERLDMN 244
              A++A++L   M  E    +PN  T+  AL AC  L A   G +IH Y +R ++  + 
Sbjct: 453 HGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVP 512

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + V N +IDMYAKCG +  A  VFDN+   K+ VTW +++  + +HG G  AL +FE+M 
Sbjct: 513 LFVSNCLIDMYAKCGDIGDARLVFDNMM-EKNEVTWTSLMTGYGMHGYGEEALGIFEEMR 571

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRL 363
           R G K D V+ L  L AC+H+G++D G+  FN M  + GV P  +HY  +VDLLGRAGRL
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRL 631

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
             A  +++ + M    V+W  LL  C+++G VE+ E A++K+ E+ SNN G + LLSN+Y
Sbjct: 632 NAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMY 691

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A   RW DV R+R  M+++ +KK PG S++E       FF  DK+H   +EIY+ L + M
Sbjct: 692 ANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHM 751

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            +IK+ GY   T   LHD+ +EEK++ L  HSEKLA+A+G+++T +  +I++ KNLR+C 
Sbjct: 752 QRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCG 811

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH     +S++ + EII+RD  RFH FK+G CSCK YW
Sbjct: 812 DCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 178/367 (48%), Gaps = 15/367 (4%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
             + KC +   V  IH K L   + T          + S +I  Y    L  L++A +L 
Sbjct: 33  PFIHKCKTISQVKLIHQKLLSFGILT--------LNLTSHLISTYI--SLGCLSHAVSLL 82

Query: 66  RQINAPS---TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           R+   PS      +N+++R   ++ +    +  +  M   S   D  T  F  KAC  + 
Sbjct: 83  RRF-PPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEIS 141

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           ++      H+     GF+++  +G  L+ +Y++ G +  A+KVFDEM V D+ SWN++I 
Sbjct: 142 SVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIE 201

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
             A+      A+++F +M  E  F+P+++T++  L  C  +G    G + H +     + 
Sbjct: 202 SYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMI 261

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            N+ V N ++DMYAK G++D+A  VF N+   K +V+WN MV  ++  G    A+ LFEQ
Sbjct: 262 QNMFVGNCLVDMYAKFGMMDEANTVFSNMPV-KDVVSWNAMVAGYSQIGRFEDAVRLFEQ 320

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M    +K D V++ AA+      GL  + + +   M + G+KPN     SV+      G 
Sbjct: 321 MQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGA 380

Query: 363 LQEACDI 369
           L    +I
Sbjct: 381 LMHGKEI 387


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/523 (37%), Positives = 315/523 (60%), Gaps = 6/523 (1%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF +     T  +N ++ GL  S    +A+   R+M +     +  T S A      +L 
Sbjct: 200 LFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLL 259

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG--VRDIA-SWNAL 180
                Q+H  VL      DA + ++L+D+Y K G + +A  VFD      RD+  +W+ +
Sbjct: 260 PDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTM 319

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +AG  Q     EA+DLF+RM  EGV   +  T+    AAC ++G  ++G ++H  + +  
Sbjct: 320 VAGYVQNGREEEALDLFRRMLREGV-AADRFTLTSVAAACANVGMVEQGRQVHGCVEKLW 378

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
             ++  + +A++DMYAKCG L+ A  +FD   C K++  W +M+ ++A HG G  A+ELF
Sbjct: 379 YKLDAPLASAIVDMYAKCGNLEDARSIFDR-ACTKNIAVWTSMLCSYASHGQGRIAIELF 437

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGR 359
           E+M    + P++++ +  L AC+H GLV +G   F  M    G+ P+++HY  +VDL GR
Sbjct: 438 ERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGR 497

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           +G L +A + ++  ++  + ++W+TLL AC+L+   E A++AS KLV++   + G +V+L
Sbjct: 498 SGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVML 557

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YA   +W D   +R +M+ R V+K PG S+I +   +H F   D SH +  EIY  L
Sbjct: 558 SNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYL 617

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           ++++ ++KE GY + T  V+HD+ +E++E AL +HSEKLA+AFG+IST   T +++FKNL
Sbjct: 618 EKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNL 677

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH+ IK IS    REI+VRD  RFH FKD +CSC+D+W
Sbjct: 678 RVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 186/426 (43%), Gaps = 42/426 (9%)

Query: 25  LQAHLTTTGQFQSKLFPV---RSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           L+      G  +++L  V   R+ ++ F+          A  +F +    +   +   + 
Sbjct: 27  LRGRAARGGSLEARLATVPHERASVLRFWVRR--RRFHDARGVFDERPTRTAPVWTLTIS 84

Query: 82  GLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           G A   +  + +  + +ML  G    +A   +  ++ CA +  +    ++H  +LR+G  
Sbjct: 85  GCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVH 144

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKV-------------------------------FDEM 169
            D +L   +LD+YAK G+   A++V                               FDE 
Sbjct: 145 LDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDES 204

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
            +RD  SWN +I+GL +   A++A+   +RM   GV   N  T   A    G L     G
Sbjct: 205 PLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVF-NHYTYSTAFVLAGMLLLPDLG 263

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAF 287
            ++H  +    L+ +  V ++++DMY KCGLL+ A  VFD+     R     W+TMV  +
Sbjct: 264 RQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGY 323

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM 347
             +G    AL+LF +M R GV  D  +  +   AC + G+V+ G ++   +     K + 
Sbjct: 324 VQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDA 383

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASRKLV 406
               ++VD+  + G L++A  I        ++ +W ++L +   +G   +A E+  R   
Sbjct: 384 PLASAIVDMYAKCGNLEDARSIFDRACT-KNIAVWTSMLCSYASHGQGRIAIELFERMTA 442

Query: 407 EMGSNN 412
           E  + N
Sbjct: 443 EKMTPN 448


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/528 (38%), Positives = 317/528 (60%), Gaps = 3/528 (0%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
            +L  A  LF ++   +   +NA++ GL +      ++ ++  M R     D        
Sbjct: 121 GDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVF 180

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           + CA +  +    Q+H++V+R G   D  +G++L  +Y + G +   + V   +    I 
Sbjct: 181 RCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIV 240

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           S N +IAG  Q   +  A++ F  M+  GV   + VT + A+++C  L A  +G +IH  
Sbjct: 241 SCNTIIAGRTQNGDSEGALEYFCMMRSVGV-AADVVTFVSAISSCSDLAALAQGQQIHGQ 299

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           + +  +D  V V   ++ MY++CG L  +  VF    C       + M+ A+  HG G +
Sbjct: 300 VMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGY-CGSDTFLLSAMISAYGFHGHGQK 358

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVV 354
           A+ELF+QM   G +P DV++LA L AC+H+GL ++G+  F  M    G++P++KHY  VV
Sbjct: 359 AIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVV 418

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLLGR+G L EA  ++ S+ +  D V+W+TLL AC+   + +MAE  +++++E+  ++  
Sbjct: 419 DLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSA 478

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
            +VLLSN+ A   RW DV  VRKAM++ +V+K PG S++E+ G IH+F T D+SH + +E
Sbjct: 479 SYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKE 538

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           I E L+E+M KI++ GY+   S VLHD+ +EEKE +L +HSEKLA+AF  +S  E   I+
Sbjct: 539 IDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIR 598

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V KNLR+C DCH  IKL+S+V  REI+VRD  RFH FKDG CSC+DYW
Sbjct: 599 VMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 134/276 (48%), Gaps = 4/276 (1%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L   Y K G++  A+K+FDEM  R++A+WNA++AGL       E++  F  M+ EG+  P
Sbjct: 113 LFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGM-HP 171

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           +E  +      C  L     G ++H Y+    LD ++ V +++  MY +CG L +   V 
Sbjct: 172 DEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVL 231

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
             +    S+V+ NT++     +GD   ALE F  M   GV  D V++++A+ +C+    +
Sbjct: 232 RMLP-SLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAAL 290

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
             G ++   +   GV   +     +V +  R G L ++  +      G+D  L   ++ A
Sbjct: 291 AQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYC-GSDTFLLSAMISA 349

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
              +G  + A    ++++  G+    D   L+ LYA
Sbjct: 350 YGFHGHGQKAIELFKQMMNGGAEP-SDVTFLALLYA 384



 Score = 38.9 bits (89), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N ++  YA  G L  A E+F+ I  R+++++WN +   +  +GD   A +LF++M    V
Sbjct: 80  NHLMLAYADLGDLTAARELFERIP-RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNV 138

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
                ++ A +    + G  ++ +  F  M   G+ P+    GSV
Sbjct: 139 ----ATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSV 179


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 317/527 (60%), Gaps = 3/527 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  LF ++ A +   +NA++ GL +S     ++ ++  M R   + D        +
Sbjct: 123 DLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFR 182

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            CA +  +    Q+H++V+R G   D  +G++L  +Y + G +   +     +   +I S
Sbjct: 183 CCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVS 242

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
            N  I+G  Q   A  A++ F  M+  GV + N VT + A+ +C  L A  +G +IH   
Sbjct: 243 CNTTISGRTQNGDAEGALEFFCLMRGAGV-EANAVTFVSAVTSCSDLAALAQGQQIHALA 301

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +  +D  V V  +++ MY++CG L  +  V         LV  + M+ A+  HG G +A
Sbjct: 302 IKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYS-GTDLVLCSAMISAYGFHGHGQKA 360

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVD 355
           + LF+QM  AG +P++V++L  L AC+H+GL D+G+  F  M    G++P++KHY  +VD
Sbjct: 361 VGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVD 420

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LLGR+G L EA D++ S+ +  D V+W+TLL AC+     +MAE  + +++E+  ++   
Sbjct: 421 LLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSAS 480

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +VLLSN+ A   RW+DV +VR+ M+ ++V+K PG S++E+ G IH+F T D+SH + REI
Sbjct: 481 YVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREI 540

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
            E L+E+M +I++ GYA   S V HD+ +EEKE +L +HSEKLA+AF  +S  E   I+V
Sbjct: 541 VECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRV 600

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH  IKL+SKV  REI+VRD  RFH FKDG CSC DYW
Sbjct: 601 MKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 143/279 (51%), Gaps = 10/279 (3%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L+  Y K G++ +A+K+FDEM  R++A+WNA++AGL    L  E++  F  M+ EG+ +P
Sbjct: 114 LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGM-QP 172

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL---DKAF 265
           +E  +      C  L     G ++H Y+    LD ++ V +++  MY +CG L   + A 
Sbjct: 173 DEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAAL 232

Query: 266 EVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
               ++    ++V+ NT +     +GD   ALE F  M  AGV+ + V++++A+ +C+  
Sbjct: 233 RALPSL----NIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDL 288

Query: 326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
             +  G ++       GV   +    S+V +  R G L ++  +    S GTD+VL   +
Sbjct: 289 AALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYS-GTDLVLCSAM 347

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           + A   +G  + A    ++++  G+    +   L+ LYA
Sbjct: 348 ISAYGFHGHGQKAVGLFKQMMAAGAEP-NEVTFLTLLYA 385



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N ++  YA  G    A  +F+ I  ++++++WN ++  +  +GD   A +LF++M    V
Sbjct: 81  NHLLLAYADLGDFPTARGLFERIP-KRNVMSWNILIGGYVKNGDLETARKLFDEMPARNV 139

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
                ++ A +    ++GL ++ +  F +M   G++P+    GS+
Sbjct: 140 ----ATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSL 180


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/567 (36%), Positives = 331/567 (58%), Gaps = 43/567 (7%)

Query: 58  LAYAHALF--RQINAPSTNDFNAVLRGLAHSSKPT---NAVLWYRQMLRGSHRSDALTCS 112
           ++YA+ +F  R +   S   +N ++R + H+  P    + +  Y +M       D  T  
Sbjct: 7   ISYANPIFHIRHLKLESFV-WNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFP 65

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY------------------- 153
           F L +    + L    + H+ +L  G   D  + T+LL++Y                   
Sbjct: 66  FLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSK 125

Query: 154 ------------AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
                       AK G I  A+K+FDEM  R++ SW+ LI G        EA+DLF+ M+
Sbjct: 126 DLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQ 185

Query: 202 M----EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
           +    E    PN+ T+   L+ACG LGA ++G  +H YI +  +++++V+  A+IDMYAK
Sbjct: 186 LPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAK 245

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYL 316
           CG L++A  VFD +  +K +  ++ M+   A++G      ++F +M  +  + P+ V+++
Sbjct: 246 CGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFV 305

Query: 317 AALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
             L AC H GL++ G   F  M    G+ P+++HYG +VDL GR+G ++EA   + S+ M
Sbjct: 306 GILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPM 365

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
             D+++W +LL   ++ GD++  E A ++L+E+   N G +VLLSN+YA   RW +V R+
Sbjct: 366 EPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRI 425

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           R  M+ + +KKVPG SY+EV GV+H+F   D+S  +   IY  L+EIM +++E GY + T
Sbjct: 426 RHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLREAGYVSDT 485

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
             VL D+ E++KE AL YHSEKLA+AF L+ T   T +++ KNLRIC DCH V+K+ISK+
Sbjct: 486 KEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKL 545

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++REI+VRD  RFH F DG+CSC+D+W
Sbjct: 546 FSREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 133/275 (48%), Gaps = 9/275 (3%)

Query: 25  LQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLA 84
           L + L    +  SK  P  + ++  YA + L  + +A  LF ++   +   ++ ++ G  
Sbjct: 112 LSSALRIFDESVSKDLPAWNSVVNAYAKAGL--INHARKLFDEMPERNVISWSCLINGYV 169

Query: 85  HSSKPTNAVLWYRQMLRGSHR-----SDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
              K   A+  +R+M            +  T S  L AC R+ AL +   +HS++ ++G 
Sbjct: 170 MCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGV 229

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-RDIASWNALIAGLAQGNLASEAVDLFK 198
             D +LGT L+D+YAK G +  AK+VFD +G  +D+ +++A+I  LA   L  E   +F 
Sbjct: 230 EIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFS 289

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAK 257
            M       PN VT +G L AC H G   +G    + + EE  +  ++     ++D+Y +
Sbjct: 290 EMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGR 349

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            GL+ +A     ++     ++ W +++    + GD
Sbjct: 350 SGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGD 384


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/519 (39%), Positives = 312/519 (60%), Gaps = 13/519 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++AV+ G A       A+  +RQM       + +T +  L  CA V AL    Q H++V+
Sbjct: 338 WSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVI 397

Query: 136 RHGF-------LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD--IASWNALIAGLAQ 186
           ++           D L+   L+D+YAK      A+ +FD +  +D  + +W  +I G AQ
Sbjct: 398 KNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQ 457

Query: 187 GNLASEAVDLFKRM-KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREERLDMN 244
              A++A+ LF ++ K +   KPN  T+  AL AC  LG  + G ++H Y +R E     
Sbjct: 458 HGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEV 517

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + V N +IDMY+K G +D A  VFDN+K R ++V+W +++  + +HG G  AL LF+QM 
Sbjct: 518 LYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHGRGEEALHLFDQMQ 576

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRL 363
           + G   D +++L  L AC+H+G+VD G+  F+ M    G+ P  +HY  +VDLLGRAGRL
Sbjct: 577 KLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRL 636

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            EA +++K++SM    V+W  LL A +++ ++E+ E A+ KL E+G+ N G + LLSNLY
Sbjct: 637 NEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLY 696

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A   RW DV R+R  MK+  ++K PG S+I+       FF  D+SH +  +IY  L +++
Sbjct: 697 ANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLI 756

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            +IK+ GY   TS  LHD+ +EEK + L  HSEKLAVA+G+++T+    I++ KNLRIC 
Sbjct: 757 KRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICG 816

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH  +  IS + + EI++RD  RFH FK G+CSC+ YW
Sbjct: 817 DCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 190/392 (48%), Gaps = 58/392 (14%)

Query: 61  AHALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQMLRGSH-----RSDALTCS 112
           AH +F ++      D   +N++L       +   A+    +M  G+H     R DA+T  
Sbjct: 181 AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRM--GNHYSLKLRPDAITLV 238

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
             L ACA V AL    Q+H   +R+G + D  +G  L+ +YAK  ++  A KVF+ +  +
Sbjct: 239 NILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKK 298

Query: 173 DIASWNAL-----------------------------------IAGLAQGNLASEAVDLF 197
           D+ SWNA+                                   IAG AQ     EA+D+F
Sbjct: 299 DVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVF 358

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN-------VVVCNA 250
           ++M++ G+ +PN VT+   L+ C  +GA   G + H Y+ +  L++N       ++V N 
Sbjct: 359 RQMQLYGL-EPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNG 417

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQM--GRAG 307
           +IDMYAKC     A  +FD+I+ + K++VTW  M+  +A HG+   AL+LF Q+   +  
Sbjct: 418 LIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTS 477

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS-VVDLLGRAGRLQEA 366
           +KP+  +   AL AC   G +  G +L         +  + + G+ ++D+  ++G +  A
Sbjct: 478 LKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAA 537

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             +  ++ +  ++V W +L+    ++G  E A
Sbjct: 538 RAVFDNMKL-RNVVSWTSLMTGYGMHGRGEEA 568



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 149/293 (50%), Gaps = 6/293 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++R         + + +Y QM R     D  T  F LKAC  + +L     +H+ V 
Sbjct: 95  WNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVC 154

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---GVRDIASWNALIAGLAQGNLASE 192
            +G  ++  +  +++ +Y + G +  A ++FDE+    + DI SWN+++A   QG  +  
Sbjct: 155 ANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRT 214

Query: 193 AVDLFKRMKMEGVFK--PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
           A+ +  RM      K  P+ +T++  L AC  + A + G ++H +     L  +V V NA
Sbjct: 215 ALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNA 274

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           ++ MYAKC  +++A +VF+ IK +K +V+WN MV  ++  G    AL LF+ M    +K 
Sbjct: 275 LVSMYAKCSKMNEANKVFEGIK-KKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKL 333

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
           D +++ A +      G   + + +F  M   G++PN+    S++      G L
Sbjct: 334 DVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGAL 386



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 124/275 (45%), Gaps = 12/275 (4%)

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM--GVRDIASWNALIAGLAQGN 188
           H  +  HGF     + +  +  Y + G    A  +   +      +  WNALI    +  
Sbjct: 50  HQQIFVHGFTE---MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLG 106

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
           L  + +  + +M+  G + P+  T    L ACG + + + G  +H  +    L  NV +C
Sbjct: 107 LLDDTLGFYCQMQRLG-WLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFIC 165

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRK--SLVTWNTMVMAFAVHGDGPRALELFEQMGR- 305
           N+++ MY +CG LD A ++FD +  RK   +V+WN+++ A+   G    AL +  +MG  
Sbjct: 166 NSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNH 225

Query: 306 --AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
               ++PD ++ +  L AC     +  G ++       G+  ++    ++V +  +  ++
Sbjct: 226 YSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKM 285

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            EA  + + +    D+V W  ++      G  + A
Sbjct: 286 NEANKVFEGIKK-KDVVSWNAMVTGYSQIGSFDSA 319


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/525 (39%), Positives = 324/525 (61%), Gaps = 7/525 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKACA 119
           A A+F  +   ++  +NA++ G A +   T A+ L++R +  G   +DA   + AL+AC 
Sbjct: 173 ARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLA-ALQACG 231

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI-ASWN 178
            +  L E  ++H  ++R G  ++  +   L+  YAK      A +VF+E+G +    SWN
Sbjct: 232 ELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWN 291

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           A+I G  Q     +A  LF RM++E V +P+  T++  + A   +    +   IH Y   
Sbjct: 292 AMILGFTQNECPEDAERLFARMQLENV-RPDSFTLVSVIPAVADISDPLQARWIHGYSIR 350

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            +LD +V V  A+IDMY+KCG +  A  +FD+ + R  ++TWN M+  +  HG G  A+E
Sbjct: 351 HQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRH-VITWNAMIHGYGSHGFGQAAVE 409

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           LFE+M   G  P++ ++L+ L AC+HAGLVD+G + F SM  + G++P M+HYG++VDLL
Sbjct: 410 LFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLL 469

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           GRAG+L EA   +K++ +   + ++  +LGAC+L+ +VE+AE +++ + E+G       V
Sbjct: 470 GRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHV 529

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LL+N+YA    W DV RVR AM+ + ++K PG+S I++   +H F++   +H   ++IY 
Sbjct: 530 LLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYA 589

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
           +L +++ +IK+ GY   T  + HD+ ++ K   L  HSEKLA+A+GLI T+  T+IQ+ K
Sbjct: 590 RLAKLIEEIKDMGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKK 648

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+C DCH+  KLIS +  REII+RD  RFH FKDG CSC DYW
Sbjct: 649 NLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 142/265 (53%), Gaps = 3/265 (1%)

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML--RGSHRSDALTCSFALK 116
           A A  +F ++ +     +NAV+ G A +  P++A+    +M    G  R D++T    L 
Sbjct: 68  ADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLP 127

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA   AL    ++H+  LR G      + T +LD Y K G + +A+ VFD M VR+  S
Sbjct: 128 ACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVS 187

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WNA+I G A    A+EA+ LF RM  EGV    + +VL AL ACG LG   E  ++HE +
Sbjct: 188 WNAMIDGYADNGNATEAMALFWRMVQEGV-DVTDASVLAALQACGELGYLDEVRRVHELL 246

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
               L  NV V NA+I  YAKC   D A +VF+ +  +K+ ++WN M++ F  +     A
Sbjct: 247 VRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDA 306

Query: 297 LELFEQMGRAGVKPDDVSYLAALCA 321
             LF +M    V+PD  + ++ + A
Sbjct: 307 ERLFARMQLENVRPDSFTLVSVIPA 331



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 152/319 (47%), Gaps = 9/319 (2%)

Query: 110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
           T +  LK CA    L     +H+ +   G  ++++  T L ++Y K      A++VFD M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMK-MEGVFKPNEVTVLGALAACGHLGAWKE 228
             RD  +WNA++AG A+  L S A++   RM+  EG  +P+ VT++  L AC    A   
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
             ++H +     LD  V V  AV+D Y KCG ++ A  VFD +  R S V+WN M+  +A
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNS-VSWNAMIDGYA 196

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK 348
            +G+   A+ LF +M + GV   D S LAAL AC   G +D+  R+   +   G+  N+ 
Sbjct: 197 DNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVS 256

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL-LGACQLYGDVEMAEIASRKLVE 407
              +++    +  R   A  +   +      + W  + LG  Q     E  E A R    
Sbjct: 257 VTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQ----NECPEDAERLFAR 312

Query: 408 MGSNNC--GDFVLLSNLYA 424
           M   N     F L+S + A
Sbjct: 313 MQLENVRPDSFTLVSVIPA 331


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/582 (36%), Positives = 341/582 (58%), Gaps = 14/582 (2%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           A  + L++ C SN AV   ++  +  HL   G  +  +F V   I  +   + LN+   A
Sbjct: 62  ATYSELIKCCISNRAVHEGNL--ICRHLYFNGH-RPMMFLVNVLINMYVKFNLLND---A 115

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
           H LF Q+   +   +  ++   +       A+     MLR + R +  T S  L++C   
Sbjct: 116 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCN-- 173

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
             + +   +H  +++ G  +D  + + L+DV+AK+GE   A  VFDEM   D   WN++I
Sbjct: 174 -GMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 232

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            G AQ + +  A++LFKRMK  G F   + T+   L AC  L   + G + H +I   + 
Sbjct: 233 GGFAQNSRSDVALELFKRMKRAG-FIAEQATLTSVLRACTGLALLELGMQAHVHI--VKY 289

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           D ++++ NA++DMY KCG L+ A  VF+ +K  + ++TW+TM+   A +G    AL+LFE
Sbjct: 290 DQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISGLAQNGYSQEALKLFE 348

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRA 360
           +M  +G KP+ ++ +  L AC+HAGL++DG   F SM    G+ P  +HYG ++DLLG+A
Sbjct: 349 RMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKA 408

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G+L +A  ++  +    D V W+TLLGAC++  ++ +AE A++K++ +   + G + LLS
Sbjct: 409 GKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLS 468

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA  ++WD V  +R  M++R +KK PG S+IEV   IH F   D SH +  E+ +KL+
Sbjct: 469 NIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLN 528

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           +++ ++   GY   T+ VL D+  E+ E++L +HSEKLA+AFGL++      I++ KNLR
Sbjct: 529 QLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLR 588

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IC DCH   KL SK+  R I++R  +R+H F+DG CSC DYW
Sbjct: 589 ICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 142/283 (50%), Gaps = 8/283 (2%)

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
           +D+ T S  +K C    A+ E   I  H+  +G      L   L+++Y K   +  A ++
Sbjct: 59  ADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQL 118

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FD+M  R++ SW  +I+  ++  +  +A++L   M  + V +PN  T    L +C  +  
Sbjct: 119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNV-RPNVYTYSSVLRSCNGMSD 177

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            +    +H  I +E L+ +V V +A+ID++AK G  + A  VFD +    ++V WN+++ 
Sbjct: 178 VR---MLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV-WNSIIG 233

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
            FA +     ALELF++M RAG   +  +  + L AC    L++ G++    +       
Sbjct: 234 GFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQ 291

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           ++    ++VD+  + G L++A  +   +    D++ W T++  
Sbjct: 292 DLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/538 (38%), Positives = 316/538 (58%), Gaps = 5/538 (0%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +I+ Y  S  N +  A  +F+ +       +NAV+ G + + +   A   +  M      
Sbjct: 253 LIDMY--SKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIG 310

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            +  T S  LK+ A + A +   QIH+  L+ GF  D  +  +L+D Y K G +  A +V
Sbjct: 311 FNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRV 370

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           F+E  + D+  + +L+   AQ     EA+ L+  M+  G+ KP+       L AC  L A
Sbjct: 371 FEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGI-KPDSFVCSSLLNACASLSA 429

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
           +++G ++H +I +     ++   N++++MYAKCG ++ A   F  I  R  +V+W+ M+ 
Sbjct: 430 YEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMIG 488

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVK 344
             A HG G  AL+LF+QM + GV P+ ++ ++ LCACNHAGLV +    FNSM    G++
Sbjct: 489 GLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIE 548

Query: 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRK 404
           P  +HY  ++DLLGRAG+L+ A ++V  +    + ++W  LLGA +++ ++++ E A+  
Sbjct: 549 PMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEM 608

Query: 405 LVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFT 464
           L+ +     G  VLL+N+YA+   WD V RVR+ MK+  VKK PG S++EV   ++ F  
Sbjct: 609 LLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIV 668

Query: 465 SDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGL 524
            D+SH +  EIY KLDE+   +K+ GY       LHD+   EKE  L +HSEKLAVAFGL
Sbjct: 669 GDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGL 728

Query: 525 ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           I+T     I+V KNLRIC DCH V+K ISK+ +REIIVRD  RFH F++G+CSC +YW
Sbjct: 729 IATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 147/287 (51%), Gaps = 4/287 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           LKAC     L    Q+H  V+  GF +D  +  +L+ +YAK G    A+ +FD +  R +
Sbjct: 17  LKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSV 76

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWNAL +     ++  EAV LF  M + G+ +PNE ++   +  C  L    +G KIH 
Sbjct: 77  VSWNALFSCYVHSDMHGEAVSLFHDMVLSGI-RPNEFSLSSMINVCTGLEDSVQGRKIHG 135

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           Y+ +   D +    NA++DMYAK G+L+ A  VFD I  +  +V+WN ++    +H    
Sbjct: 136 YLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEI-AKPDIVSWNAIIAGCVLHEYHH 194

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
           RALEL  +M ++G+ P+  +  +AL AC    L + G +L +S+    +  +      ++
Sbjct: 195 RALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLI 254

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL-GACQLYGDVEMAEI 400
           D+  +   + +A  +V  +    DM+ W  ++ G  Q   D E A +
Sbjct: 255 DMYSKCNSMDDA-RLVFKLMPERDMIAWNAVISGHSQNEEDEEAASL 300



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 178/397 (44%), Gaps = 32/397 (8%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+   +  TG F S  F   S +I +       +   A +LF  I   S   +NA+   
Sbjct: 30  KQVHGIVVVTG-FDSDEFVANSLVILYAKCGGFGD---ARSLFDAIPDRSVVSWNALFSC 85

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
             HS     AV  +  M+    R +  + S  +  C  +    +  +IH ++++ G+ +D
Sbjct: 86  YVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSD 145

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
           A     L+D+YAKVG +  A  VFDE+   DI SWNA+IAG         A++L + M  
Sbjct: 146 AFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNK 205

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            G+  PN  T+  AL AC  +   + G ++H  + +  +  +  +   +IDMY+KC  +D
Sbjct: 206 SGMC-PNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMD 264

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY------L 316
            A  VF  +   + ++ WN ++   + + +   A  LF  M   G+  +  +       +
Sbjct: 265 DARLVF-KLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSI 323

Query: 317 AAL-----CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
           AAL     C   HA  +  G    N + N           S++D  G+ G +++A  + +
Sbjct: 324 AALQANYMCRQIHALSLKSGFEFDNYVVN-----------SLIDTYGKCGHVEDATRVFE 372

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
              +  D+VL+ +L+ A   Y      E A R  +EM
Sbjct: 373 ESPI-VDLVLFTSLVTA---YAQDGQGEEALRLYLEM 405


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/566 (36%), Positives = 314/566 (55%), Gaps = 44/566 (7%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
            ++  A ++F +++      +NA++ G  HS     A   +R+M+      D  T +  L
Sbjct: 242 GDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVL 301

Query: 116 KACARVLALFETLQIHSHV--LRHGFLADALL--GTTLLDVYAKVGEIVSAKKVFDEMGV 171
            ACA          +H  +  L+  F+ +A L     L+ +Y+K G I  A+++FD M  
Sbjct: 302 SACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKS 361

Query: 172 RDIASWNALIAGLAQ-------------------------------GNLASEAVDLFKRM 200
           +D+ SWN +++G  +                               G  + +A+ LF RM
Sbjct: 362 KDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRM 421

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           + E V KP + T  GA++ACG LG+ K G ++H ++ +   + +    NA+I MYA+CG 
Sbjct: 422 RAEDV-KPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGA 480

Query: 261 LDKA---FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           + +A   F V  NI      V+WN M+ A   HG G  ALELF++M   G+ PD +S+L 
Sbjct: 481 VKEANLMFLVMPNIDS----VSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLT 536

Query: 318 ALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
            L ACNH+GLVD+G + F SM  + G+ P   HY  ++DLLGRAGR+ EA D++K++   
Sbjct: 537 VLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFE 596

Query: 377 TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVR 436
               +W+ +L  C+  GD+E+   A+ +L +M   + G ++LLSN Y+A  RW D  RVR
Sbjct: 597 PTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVR 656

Query: 437 KAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTS 496
           K M++R VKK PG S+IE G  +H F   D  H +  ++Y+ L+ +  ++++ GY   T 
Sbjct: 657 KLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTK 716

Query: 497 CVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVY 556
            VLHD+   +KE+ L  HSE+LAV FGL+      ++ V KNLRIC DCH V+  +SK  
Sbjct: 717 VVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAV 776

Query: 557 NREIIVRDRVRFHRFKDGACSCKDYW 582
            REI+VRD  RFH FKDG CSC +YW
Sbjct: 777 GREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 161/333 (48%), Gaps = 26/333 (7%)

Query: 46  IIEFYALSPLNELAYAHALFRQINA-----PSTNDFNAVLRGLAHSSKPTNAVLWYRQML 100
           +I  YA +  +  A A A+FR + A     P    F A+L    H   P  +V    Q+ 
Sbjct: 127 VISAYARA--SHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGH--LPNISVRHCAQLQ 182

Query: 101 RGSHRSDA---LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157
               +S A   L+ S AL A        E  +    VL      DAL  TT++  Y + G
Sbjct: 183 CSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRG 242

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
           ++ +A+ VF+E+ V+    WNA+I+G     +  EA +LF+RM +E V   +E T    L
Sbjct: 243 DVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERV-PLDEFTFTSVL 301

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVV------VCNAVIDMYAKCGLLDKAFEVFDNI 271
           +AC + G +  G  +H  I   RL  N V      V NA++ +Y+KCG +  A  +FDN+
Sbjct: 302 SACANAGFFAHGKSVHGQI--TRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNM 359

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
           K  K +V+WNT++  +       +A+E+FE+M       +++S++  +    H G  +D 
Sbjct: 360 KS-KDVVSWNTILSGYVESSCLDKAVEVFEEMPYK----NELSWMVMVSGYVHGGFSEDA 414

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
           ++LFN M    VKP    Y   +   G  G L+
Sbjct: 415 LKLFNRMRAEDVKPCDYTYAGAISACGELGSLK 447



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 156/382 (40%), Gaps = 52/382 (13%)

Query: 3   NLNALLQKCSSNGAVSH---IH--IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE 57
              ++L  C++ G  +H   +H  I +LQ +            PV + ++  Y  S    
Sbjct: 296 TFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAAL-----PVNNALVTLY--SKCGN 348

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM---------------LRG 102
           +A A  +F  + +     +N +L G   SS    AV  + +M               + G
Sbjct: 349 IAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHG 408

Query: 103 SHRSDAL------------TCSF----ALKACARVLALFETLQIHSHVLRHGFLADALLG 146
               DAL             C +    A+ AC  + +L    Q+H H+++ GF      G
Sbjct: 409 GFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAG 468

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
             L+ +YA+ G +  A  +F  M   D  SWNA+I+ L Q     EA++LF RM  EG++
Sbjct: 469 NALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIY 528

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC----NAVIDMYAKCGLLD 262
            P+ ++ L  L AC H G   EG    +Y    + D  ++        +ID+  + G + 
Sbjct: 529 -PDRISFLTVLTACNHSGLVDEG---FQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIG 584

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
           +A ++   +    +   W  ++      GD        +Q+ +   +  D +Y+      
Sbjct: 585 EARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQ-HDGTYILLSNTY 643

Query: 323 NHAGLVDDGVRLFNSMANCGVK 344
           + AG   D  R+   M + GVK
Sbjct: 644 SAAGRWVDAARVRKLMRDRGVK 665



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 97/252 (38%), Gaps = 44/252 (17%)

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMAFAVHGDGPRALE 298
           R D   V   +++  YA  G L  A   FD + + R+  V  N ++ A+A       A+ 
Sbjct: 83  RADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVA 142

Query: 299 LFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           +F  +  +G ++PDD S+ A L A  H             + N  V+             
Sbjct: 143 VFRSLLASGSLRPDDYSFTALLSAAGH-------------LPNISVR------------- 176

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
               +LQ  C ++KS + G  + +   L+        +E    A + L EM      D +
Sbjct: 177 -HCAQLQ--CSVLKSGAGGV-LSVSNALVALYMKCEALEATRDARKVLDEMPDK---DAL 229

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI---EVGGVIHKFFTSDKSHVKWRE 474
             + +   Y R  DVG  R   +  DVK    F  +    + G +H     +   +  R 
Sbjct: 230 TWTTMVVGYVRRGDVGAARSVFEEVDVK----FDVVWNAMISGYVHSGMVVEAFELFRRM 285

Query: 475 IYEK--LDEIMF 484
           + E+  LDE  F
Sbjct: 286 VLERVPLDEFTF 297


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/534 (39%), Positives = 315/534 (58%), Gaps = 33/534 (6%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSK-----------PTNAVLWYRQMLRGSHRSDAL 109
           A A F  +    T  +N ++ G A + +           PT  V+ +  M+ G      L
Sbjct: 57  AQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDL 116

Query: 110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
             +         L LFE     S V            T ++  Y K+G I  A+++F++M
Sbjct: 117 DSA---------LKLFEKAPFKSVVA----------WTAMITGYMKLGRIGLAERLFEKM 157

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
             +++ +WNA+IAG  + + A + V LF+ M   G+ +PN  T+  AL  C  L A + G
Sbjct: 158 PEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGI-QPNSSTLSSALLGCSELSALQLG 216

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
            ++H+ + +  L  +     ++I MY KCG+L+  +++F  +  R+ +VTWN M+  +A 
Sbjct: 217 RQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVP-RRDVVTWNAMISGYAQ 275

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMK 348
           HG+G +AL LF++M   G+KPD ++++A L ACNHAG  D GV+ F+SMA + G+     
Sbjct: 276 HGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPD 335

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
           HY  +VDLLGRAG+L EA D+++ +       ++ TLLGAC+++ + EMAE AS+KL+ +
Sbjct: 336 HYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNL 395

Query: 409 GSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKS 468
              +   +V L+N+YAA +RWD V RVRK+MK+  V K PG+S+IEV  + H+F + DK 
Sbjct: 396 DPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKF 455

Query: 469 HVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTS 528
           H +   I+ KL E+  K+K  GY       LHD+GEE+KE  L +HSEKLA+A+GLI   
Sbjct: 456 HPELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLP 515

Query: 529 EATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             T I+VFKNLR+C DCH  IK IS++  REIIVRD  RFH FKDG CSC DYW
Sbjct: 516 PGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 115/237 (48%), Gaps = 2/237 (0%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           L  +  A  LF ++   +   +NA++ G   + +  + V  +R M+    + ++ T S A
Sbjct: 144 LGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSA 203

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L  C+ + AL    Q+H  V +     D   GT+L+ +Y K G +    K+F ++  RD+
Sbjct: 204 LLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDV 263

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK-IH 233
            +WNA+I+G AQ     +A+ LF  M  +G+ KP+ +T +  L AC H G    G K  H
Sbjct: 264 VTWNAMISGYAQHGEGKKALGLFDEMIEKGM-KPDWITFVAVLMACNHAGFTDLGVKYFH 322

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
              ++  L         ++D+  + G L +A ++ + +  +     + T++ A  +H
Sbjct: 323 SMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIH 379



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 121/269 (44%), Gaps = 11/269 (4%)

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
            DA+   T+L  Y +   +  A+  F++M ++D  SWN +I G AQ     +A DLF  M
Sbjct: 36  PDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIM 95

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
             + V   N   ++     CG L +  +       + E+    +VV   A+I  Y K G 
Sbjct: 96  PTKNVVTWN--AMISGYVECGDLDSALK-------LFEKAPFKSVVAWTAMITGYMKLGR 146

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +  A  +F+ +   K+LVTWN M+  +  +      ++LF  M   G++P+  +  +AL 
Sbjct: 147 IGLAERLFEKMP-EKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALL 205

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
            C+    +  G ++   +    +  +     S++ +  + G L++   +   V    D+V
Sbjct: 206 GCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPR-RDVV 264

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            W  ++     +G+ + A     +++E G
Sbjct: 265 TWNAMISGYAQHGEGKKALGLFDEMIEKG 293


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/542 (37%), Positives = 319/542 (58%), Gaps = 5/542 (0%)

Query: 42   VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
            V + +I+ Y  S   ++  A  LF   +      +NA++ G   S     A+  Y  M  
Sbjct: 1074 VSTALIDVY--SKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQE 1131

Query: 102  GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
               RSD +T   A KA   ++ L +  QIH+ V++ GF  D  + + +LD+Y K GE+ S
Sbjct: 1132 SGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMES 1191

Query: 162  AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
            A++VF E+   D  +W  +I+G  +      A+  + +M++  V +P+E T    + AC 
Sbjct: 1192 ARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKV-QPDEYTFATLVKACS 1250

Query: 222  HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
             L A ++G +IH  I +     +  V  +++DMYAKCG ++ A  +F     R+ + +WN
Sbjct: 1251 LLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRR-IASWN 1309

Query: 282  TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-N 340
             M++  A HG+   AL+ F+ M   GV PD V+++  L AC+H+GLV +    F SM  N
Sbjct: 1310 AMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKN 1369

Query: 341  CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             G++P ++HY  +VD L RAGR++EA  ++ S+       +++TLL AC++  D E  + 
Sbjct: 1370 YGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKR 1429

Query: 401  ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
             + KL+ +  ++   +VLLSN+YAA  +W++V   R  M+  +VKK PGFS++++   +H
Sbjct: 1430 VAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVH 1489

Query: 461  KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
             F   D+SH +   IY K++ IM +I+E GY   T   L D+ EE+KE +L YHSEKLA+
Sbjct: 1490 LFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAI 1549

Query: 521  AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
            A+GL+ T  +T+++V KNLR+C DCH  IK ISKV+ REI++RD  RFH F++G CSC D
Sbjct: 1550 AYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGD 1609

Query: 581  YW 582
            YW
Sbjct: 1610 YW 1611



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 173/344 (50%), Gaps = 8/344 (2%)

Query: 58   LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
            ++ A ++F Q+N      +N ++ G   S     +V  +  +LR S   D  T +  L+A
Sbjct: 986  VSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRA 1045

Query: 118  CARVL-ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            C+ +    +   QIH+  ++ G + D+ + T L+DVY+K G++  A+ +F      D+AS
Sbjct: 1046 CSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLAS 1105

Query: 177  WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
            WNA++ G        +A+ L+  M+  G  + +++T++ A  A G L   K+G +IH  +
Sbjct: 1106 WNAIMHGYIVSGDFPKALRLYILMQESGE-RSDQITLVNAAKAAGGLVGLKQGKQIHAVV 1164

Query: 237  REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
             +   ++++ V + V+DMY KCG ++ A  VF  I      V W TM+     +G    A
Sbjct: 1165 VKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDD-VAWTTMISGCVENGQEEHA 1223

Query: 297  LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA--NCGVKPNMKHYGSVV 354
            L  + QM  + V+PD+ ++   + AC+    ++ G ++  ++   NC   P +    S+V
Sbjct: 1224 LFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV--MTSLV 1281

Query: 355  DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            D+  + G +++A  + K  +    +  W  ++     +G+ + A
Sbjct: 1282 DMYAKCGNIEDARGLFKRTNT-RRIASWNAMIVGLAQHGNAKEA 1324



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 147/324 (45%), Gaps = 4/324 (1%)

Query: 76   FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
            +N  L       +   AV  +  M+      D LT    L   A +  L    QIH  V+
Sbjct: 903  WNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVM 962

Query: 136  RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
            R G      +G  L+++Y K G +  A+ VF +M   D+ SWN +I+G     L   +V 
Sbjct: 963  RSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVG 1022

Query: 196  LFKRMKMEGVFKPNEVTVLGALAACGHL-GAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
            +F  +  + +  P++ TV   L AC  L G +    +IH    +  + ++  V  A+ID+
Sbjct: 1023 MFVHLLRDSLL-PDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDV 1081

Query: 255  YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
            Y+K G +++A  +F N +    L +WN ++  + V GD P+AL L+  M  +G + D ++
Sbjct: 1082 YSKRGKMEEAEFLFVN-QDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQIT 1140

Query: 315  YLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
             + A  A      +  G ++   +   G   ++     V+D+  + G ++ A  +   + 
Sbjct: 1141 LVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP 1200

Query: 375  MGTDMVLWQTLLGACQLYGDVEMA 398
               D V W T++  C   G  E A
Sbjct: 1201 -SPDDVAWTTMISGCVENGQEEHA 1223



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 154/377 (40%), Gaps = 43/377 (11%)

Query: 23   KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTN----DFNA 78
            K+  A + T+G    +   V + +I  YA      L+ A  LF     P TN     +NA
Sbjct: 676  KRAHARILTSGHHPDRF--VTNNLITMYA--KCGSLSSARKLFD--TTPDTNRDLVTWNA 729

Query: 79   VLRGLA-HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
            +L  LA H+ K  +    +R + R    +   T +   K C    +   +  +H + ++ 
Sbjct: 730  ILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKI 789

Query: 138  GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
            G   D  +   L+++YAK G I  A+ +FD M VRD+  WN ++       L  EA+ LF
Sbjct: 790  GLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLF 849

Query: 198  KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA-VIDMYA 256
                  G F+P++VT+                          R    VV C   ++++  
Sbjct: 850  SEFHRTG-FRPDDVTL--------------------------RTLSRVVKCKKNILELKQ 882

Query: 257  KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
                  K F   D+      ++ WN  +  F   G+   A++ F  M  + V  D ++++
Sbjct: 883  FKAYATKLFMYDDD---GSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFV 939

Query: 317  AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
              L        ++ G ++   +   G+   +     ++++  +AG +  A  +   ++  
Sbjct: 940  VMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNE- 998

Query: 377  TDMVLWQTLLGACQLYG 393
             D++ W T++  C L G
Sbjct: 999  VDLISWNTMISGCTLSG 1015



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 3/162 (1%)

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAF 287
           G + H  I       +  V N +I MYAKCG L  A ++FD      + LVTWN ++ A 
Sbjct: 675 GKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSAL 734

Query: 288 AVHGDGPR-ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN 346
           A H D       LF  + R+ V     +       C  +        L       G++ +
Sbjct: 735 AAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWD 794

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +   G++V++  + G ++EA  +   +++  D+VLW  ++ A
Sbjct: 795 VFVAGALVNIYAKFGLIREARVLFDGMAV-RDVVLWNVMMKA 835


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/528 (38%), Positives = 312/528 (59%), Gaps = 3/528 (0%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
            +L  A  LF ++   +   +NA++ GL +     +++ ++  M R     D        
Sbjct: 122 GDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVF 181

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           + CA +L +    Q+H++V+R G  +D  +G +L  +Y + G +   + V   +    I 
Sbjct: 182 RCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIV 241

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           S+N  IAG  Q   +  A++ F  M+   V  P+ VT + A++ C  L A  +G ++H  
Sbjct: 242 SFNTTIAGRTQNGDSEGALEYFSMMRGVEV-APDVVTFVSAISCCSDLAALAQGQQVHAQ 300

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           + +  +D  V V  +++ MY++CG L  +  V+D   C   L   + M+ A   HG G +
Sbjct: 301 VIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGY-CGLDLFLLSAMISACGFHGQGHK 359

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVV 354
           A+ELF+QM   G +P++V++LA L AC+H+GL D+G+  F  M    G +P++KHY  +V
Sbjct: 360 AVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIV 419

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLLGR+G L EA  ++ S+ +  D V+W+TLL AC+   + +MAE  + +++E    +  
Sbjct: 420 DLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSA 479

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
            +VLLSN+ A  +RW DV  VRK M+ +D++K PG S++E  G +H+F T DKSH +  E
Sbjct: 480 PYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGE 539

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           I E L E+M KI++ GYA   + V HD+ +EEKE +L +HSEKLA+AF  ++  E   I+
Sbjct: 540 IDEYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPIR 599

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V KNLR+C DCH  IKLIS+V  REI+VRD  RFH F+DG CSC DYW
Sbjct: 600 VMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 135/270 (50%), Gaps = 4/270 (1%)

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G++ SA+++FD+M  R++A+WNA++AGL    L  +++  F  M+ EG+  P+E  + 
Sbjct: 120 KNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGM-HPDEFGLG 178

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
                C  L     G ++H Y+    +D ++ V N++  MY +CG L +   V   +   
Sbjct: 179 SVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALP-S 237

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
            ++V++NT +     +GD   ALE F  M    V PD V++++A+  C+    +  G ++
Sbjct: 238 LTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQV 297

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
              +   GV   +    S+V +  R G L ++ + V     G D+ L   ++ AC  +G 
Sbjct: 298 HAQVIKAGVDKVVPVITSLVHMYSRCGCLGDS-ERVYDGYCGLDLFLLSAMISACGFHGQ 356

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
              A    ++++  G+    +   L+ LYA
Sbjct: 357 GHKAVELFKQMMNGGAEP-NEVTFLALLYA 385



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 10/141 (7%)

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N ++  YA  G L  A  +F+ I  ++++++WN ++     +GD   A ELF++M    V
Sbjct: 81  NNLLLAYADLGDLPTARHLFEGIS-KRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNV 139

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV----VDLLGRAGRLQ 364
                ++ A +    + GL +D ++ F +M   G+ P+    GSV      LL      Q
Sbjct: 140 ----ATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQ 195

Query: 365 EACDIVKSVSMGTDMVLWQTL 385
               +V+S  M +DM +  +L
Sbjct: 196 VHAYVVRS-GMDSDMCVGNSL 215


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/527 (37%), Positives = 319/527 (60%), Gaps = 4/527 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L+YA  +F  I + + N +NA++ G A S+ P  ++  + QM       D+ T    L A
Sbjct: 446 LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 505

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C+++ +L    ++H  ++R+    D  +  ++L +Y   GE+ + + +FD M  + + SW
Sbjct: 506 CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSW 565

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N +I G  Q      A+ +F++M + G+ +   ++++    AC  L + + G + H Y  
Sbjct: 566 NTVITGYLQNGFPDRALGVFRQMVLYGI-QLCGISMMPVFGACSLLPSLRLGREAHAYAL 624

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  L+ +  +  ++IDMYAK G + ++ +VF+ +K  KS  +WN M+M + +HG    A+
Sbjct: 625 KHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKSTASWNAMIMGYGIHGLAKEAI 683

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
           +LFE+M R G  PDD+++L  L ACNH+GL+ +G+R  + M ++ G+KPN+KHY  V+D+
Sbjct: 684 KLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDM 743

Query: 357 LGRAGRLQEACDIV-KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LGRAG+L +A  +V + +S   D+ +W++LL +C+++ ++EM E  + KL E+      +
Sbjct: 744 LGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPEN 803

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +VLLSNLYA   +W+DV +VR+ M    ++K  G S+IE+   +  F   ++    + EI
Sbjct: 804 YVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEI 863

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
                 +  KI + GY   T  V HD+ EEEK   L  HSEKLA+ +GLI TSE T+I+V
Sbjct: 864 KSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRV 923

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +KNLRIC DCH+  KLISKV  REI+VRD  RFH FK+G CSC DYW
Sbjct: 924 YKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 143/293 (48%), Gaps = 13/293 (4%)

Query: 44  SKIIEFYAL--SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           ++II  YA+  SP +    +  +F  + + +   +NAV+   + +      +  + +M+ 
Sbjct: 124 TRIITMYAMCGSPDD----SRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMIS 179

Query: 102 GSHR-SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
            +    D  T    +KACA +  +   L +H  V++ G + D  +G  L+  Y   G + 
Sbjct: 180 TTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVT 239

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME---GVFKPNEVTVLGAL 217
            A ++FD M  R++ SWN++I   +    + E+  L   M  E   G F P+  T++  L
Sbjct: 240 DALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVL 299

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
             C        G  +H +  + RLD  +V+ NA++DMY+KCG +  A  +F  +   K++
Sbjct: 300 PVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF-KMNNNKNV 358

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYLAALCACNHAGLV 328
           V+WNTMV  F+  GD     ++  QM  G   VK D+V+ L A+  C H   +
Sbjct: 359 VSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 411



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 134/265 (50%), Gaps = 4/265 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKAC 118
           A  +F+  N  +   +N ++ G +            RQML G    ++D +T   A+  C
Sbjct: 346 AQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVC 405

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
                L    ++H + L+  F+ + L+    +  YAK G +  A++VF  +  + + SWN
Sbjct: 406 FHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWN 465

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ALI G AQ N    ++D   +MK+ G+  P+  TV   L+AC  L + + G ++H +I  
Sbjct: 466 ALIGGHAQSNDPRLSLDAHLQMKISGLL-PDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 524

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L+ ++ V  +V+ +Y  CG L     +FD ++  KSLV+WNT++  +  +G   RAL 
Sbjct: 525 NWLERDLFVYLSVLSLYIHCGELCTVQALFDAME-DKSLVSWNTVITGYLQNGFPDRALG 583

Query: 299 LFEQMGRAGVKPDDVSYLAALCACN 323
           +F QM   G++   +S +    AC+
Sbjct: 584 VFRQMVLYGIQLCGISMMPVFGACS 608



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 134/271 (49%), Gaps = 10/271 (3%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           EL    ALF  +   S   +N V+ G   +  P  A+  +RQM+    +   ++      
Sbjct: 546 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 605

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC+ + +L    + H++ L+H    DA +  +L+D+YAK G I  + KVF+ +  +  AS
Sbjct: 606 ACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS 665

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WNA+I G     LA EA+ LF+ M+  G   P+++T LG L AC H G   EG +  + +
Sbjct: 666 WNAMIMGYGIHGLAKEAIKLFEEMQRTG-HNPDDLTFLGVLTACNHSGLIHEGLRYLDQM 724

Query: 237 REE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVF-DNIKCRKSLVTWNTMVMAFAVHGD-- 292
           +    L  N+     VIDM  + G LDKA  V  + +     +  W +++ +  +H +  
Sbjct: 725 KSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLE 784

Query: 293 -GPR-ALELFEQMGRAGVKPDDVSYLAALCA 321
            G + A +LFE       KP++   L+ L A
Sbjct: 785 MGEKVAAKLFELEPE---KPENYVLLSNLYA 812



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 126/284 (44%), Gaps = 6/284 (2%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +L T ++ +YA  G    ++ VFD +  +++  WNA+I+  ++  L  E ++ F  M 
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMI 178

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
                 P+  T    + AC  +     G  +H  + +  L  +V V NA++  Y   G +
Sbjct: 179 STTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFV 238

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL----ELFEQMGRAGVKPDDVSYLA 317
             A ++FD I   ++LV+WN+M+  F+ +G    +     E+ E+ G     PD  + + 
Sbjct: 239 TDALQLFD-IMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVT 297

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            L  C     +  G  +        +   +    +++D+  + G +  A  I K ++   
Sbjct: 298 VLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFK-MNNNK 356

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           ++V W T++G     GD        R+++  G +   D V + N
Sbjct: 357 NVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILN 400



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 12/210 (5%)

Query: 217 LAACGHLGAWKEGDKIHEYIR-EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
           L A G     + G KIH+ +    RL  + V+C  +I MYA CG  D +  VFD ++  K
Sbjct: 91  LQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALR-SK 149

Query: 276 SLVTWNTMVMAFAVHGDGPRALELF-EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           +L  WN ++ +++ +      LE F E +    + PD  +Y   + AC  AG+ D G+ L
Sbjct: 150 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKAC--AGMSDVGIGL 207

Query: 335 --FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
                +   G+  ++    ++V   G  G + +A  +   +    ++V W +++   +++
Sbjct: 208 AVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLF-DIMPERNLVSWNSMI---RVF 263

Query: 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
            D   +E +   L EM   N GD   + ++
Sbjct: 264 SDNGFSEESFLLLGEMMEEN-GDGAFMPDV 292


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/561 (38%), Positives = 314/561 (55%), Gaps = 7/561 (1%)

Query: 23   KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
            +Q+ + +  T  FQ   + V S +I+ YA   L +L  A  +  +        +  ++ G
Sbjct: 493  EQIHSQIIKTS-FQLNAY-VCSVLIDMYA--KLGKLDTAWDILIRFAGKDVVSWTTMIAG 548

Query: 83   LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
                +    A+  +RQML    RSD +  + A+ ACA + AL E  QIH+     GF +D
Sbjct: 549  YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSD 608

Query: 143  ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
                  L+ +Y+K G I  A   F++    D  +WNAL++G  Q     EA+ +F RM  
Sbjct: 609  LPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNR 668

Query: 203  EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            EG+   N  T   A+ A       K+G ++H  I +   D    VCNA+I MYAKCG + 
Sbjct: 669  EGI-DSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSIS 727

Query: 263  KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
             A + F  +   K+ V+WN M+ A++ HG G  AL+ F+QM  + V+P+ V+ +  L AC
Sbjct: 728  DAKKQFLELS-MKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSAC 786

Query: 323  NHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
            +H GLVD G+  F SM    G+ P  +HY  VVD+L RAG L  A D +  + +  D ++
Sbjct: 787  SHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALV 846

Query: 382  WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
            W+TLL AC ++ ++E+ E A+  L+E+   +   +VLLSNLYA   +WD     R+ MK 
Sbjct: 847  WRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKE 906

Query: 442  RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
            + VKK PG S+IEV   IH F+  D++H    EI+E   ++  +  E GY      +L +
Sbjct: 907  KGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSE 966

Query: 502  IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
            + +E+K+  +  HSEKLA++FGL+S      I V KNLR+C DCHD IK +SKV NREII
Sbjct: 967  LQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREII 1026

Query: 562  VRDRVRFHRFKDGACSCKDYW 582
            VRD  RFH F+ GACSCKDYW
Sbjct: 1027 VRDAYRFHHFEGGACSCKDYW 1047



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 208/424 (49%), Gaps = 10/424 (2%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
              + +L+ C   G+V+   ++Q+ A +   G  +S +  V + +I+ Y+ +    +  A
Sbjct: 170 GTFSGVLEACRG-GSVAFDVVEQIHARIIYQGLGKSTI--VCNPLIDLYSRNGF--VDRA 224

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             +F  +     + + A++ GL+ +     A+  +  M            S  L AC ++
Sbjct: 225 RRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKI 284

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
            +L    Q+H  VL+ GF +D  +   L+ +Y  +G ++SA+ +F  M  RD  ++N LI
Sbjct: 285 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLI 344

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            GL+Q     +A++LFKRM+++G+ +P+  T+   + AC   G    G ++H Y  +   
Sbjct: 345 NGLSQCGYGEKAMELFKRMQLDGL-EPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGF 403

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
             N  +  A++++YAKC  ++ A   F   +  +++V WN M++A+ +  D   +  +F 
Sbjct: 404 ASNDKIEGALLNLYAKCSDIETALNYFLETEV-ENVVLWNVMLVAYGLLDDLRNSFRIFR 462

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           QM    + P+  +Y + L  C   G ++ G ++ + +     + N      ++D+  + G
Sbjct: 463 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLG 522

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           +L  A DI+   + G D+V W T++     Y   + A    R++++ G  +  D V L+N
Sbjct: 523 KLDTAWDILIRFA-GKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS--DEVGLTN 579

Query: 422 LYAA 425
             +A
Sbjct: 580 AVSA 583



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 155/320 (48%), Gaps = 9/320 (2%)

Query: 105 RSDALTCSFALKACARVL-ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
           R +  T  + L+ C +   +L E  ++HS +L+ GF  +A L   LLD Y   G++  A 
Sbjct: 64  RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGAL 123

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC-GH 222
           KVFDEM  R I +WN +I  LA  +L+ +   LF RM  E V  PNE T  G L AC G 
Sbjct: 124 KVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENV-TPNEGTFSGVLEACRGG 182

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
             A+   ++IH  I  + L  + +VCN +ID+Y++ G +D+A  VFD +   K   +W  
Sbjct: 183 SVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYL-KDHSSWVA 241

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           M+   + +     A+ LF  M   G+ P   ++ + L AC     ++ G +L   +   G
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 301

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL-GACQL-YGDVEMAEI 400
              +     ++V L    G L  A  I  ++S   D V + TL+ G  Q  YG+  M   
Sbjct: 302 FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQ-RDAVTYNTLINGLSQCGYGEKAMELF 360

Query: 401 ASRKL--VEMGSNNCGDFVL 418
              +L  +E  SN     V+
Sbjct: 361 KRMQLDGLEPDSNTLASLVV 380


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 336/584 (57%), Gaps = 12/584 (2%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           N   +L+ C  + AV     +QL A L  +G     +   R  +++ YA   L  ++ A 
Sbjct: 65  NYATILRSCVLSRAVRPG--RQLHARLLVSGLGLDAVLATR--LVDLYASCGL--VSVAR 118

Query: 63  ALFRQI-NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACAR 120
            LF ++ N  +   +N ++R  A       A+  YR+ML  GS   D  T    LKACA 
Sbjct: 119 RLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAA 178

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +L L    ++H  V+R  + AD  +   L+D+YAK G +  A  VFD   VRD   WN++
Sbjct: 179 LLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSM 238

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IA   Q    +EA+ L + M  EG+  P  VT++ A++A    GA   G ++H Y     
Sbjct: 239 IAACGQNGRPAEALALCRNMAAEGI-APTIVTLVSAISAAADAGALPRGRELHGYGWRRG 297

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
                 +  +++DMYAK G +  A  +FD +  R+ L++WN M+  F +HG    A ELF
Sbjct: 298 FGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRE-LISWNAMICGFGMHGHADHACELF 356

Query: 301 EQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLG 358
            +M   A V PD ++++  L ACNH G+V +   +F+ M     +KP ++HY  +VD+LG
Sbjct: 357 RRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLG 416

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
            +GR +EA D++K + +  D  +W  LL  C+++ +VE+AE+A  KL+E+   + G++VL
Sbjct: 417 HSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVL 476

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YA   +W++  RVRK M NR +KK+   S+IE+ G  H F   D SH +  EIYE+
Sbjct: 477 LSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEE 536

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+ +   I + GY   T+ V H++ ++EK N +  HSE+LA+AFGLIST   T + V KN
Sbjct: 537 LERLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKN 596

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH VIKLIS++  REII+RD  R+H F +G CSCKD+W
Sbjct: 597 LRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/565 (37%), Positives = 320/565 (56%), Gaps = 41/565 (7%)

Query: 50  YALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAH-------------SSKPTNAVLWY 96
           YA +P   LA A  LF +I  P    +N +L  L H             +S P   V  +
Sbjct: 58  YARAP-GRLADARHLFDRIPTPDVVSYNTLL--LCHFASGDADGARRLFASMPVRDVASW 114

Query: 97  RQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA--------------- 141
             M+ G  +S A+      +A    LA+     +  + +  GF                 
Sbjct: 115 NTMVSGLSKSGAVE-----EAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAP 169

Query: 142 ---DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
              DA+L T ++  Y  +G +V A K F+ M VR++ SWNA++AG  + + A +A+ LF+
Sbjct: 170 EKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFR 229

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            M  E   +PN  T+   L  C +L A   G +IH++  +  L  N+ V  +++ MY KC
Sbjct: 230 TMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKC 289

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G L  A  +F  +  R  +V WN M+  +A HGDG  A+ LFE+M   GV+P+ ++++  
Sbjct: 290 GDLSSACILFGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVV 348

Query: 319 LCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           L AC H GL D G++ F  M    G++P + HY  +VDLL RAG+L+ A D ++S+    
Sbjct: 349 LTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEP 408

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
               + TLL AC++Y ++E AE+A+ KL+E    + G +V L+N+YA   +WDDV RVR+
Sbjct: 409 HPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRR 468

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            MK+  V K PG+S+IE+ GV+H+F ++D+ H +   I+EKL ++  ++KE GY      
Sbjct: 469 WMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDF 528

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           VLHD+ E  K   L  HSEKLA+AFGLIST+   ++++FKNLR+C DCH+  K+IS + +
Sbjct: 529 VLHDVDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIED 588

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           REII+RD  RFH F+ G CSC DYW
Sbjct: 589 REIILRDTTRFHHFRGGHCSCDDYW 613



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 131/331 (39%), Gaps = 55/331 (16%)

Query: 109 LTCSFALKACARVLALFETLQIHSHVLRHGFLA---DALLGTT---------LLDVYAKV 156
           + C     A AR  A   +    +  +RHG LA   +A + T          LL  YA+ 
Sbjct: 2   ILCRRPFLAIARSRARSLSTAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARA 61

Query: 157 -GEIVSAKKVFDE-------------------------------MGVRDIASWNALIAGL 184
            G +  A+ +FD                                M VRD+ASWN +++GL
Sbjct: 62  PGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGL 121

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           ++     EA  +F  M +      N   ++   A  G +          E+ R      +
Sbjct: 122 SKSGAVEEAKVVFLAMPVRNSVSWN--AMVSGFACSGDMST------AEEWFRNAPEKED 173

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
            V+  A++  Y   G + KA + F+ +  R +LV+WN +V  +  +     AL LF  M 
Sbjct: 174 AVLWTAMVSGYMDIGNVVKAIKYFEAMPVR-NLVSWNAVVAGYVKNSHADDALRLFRTMV 232

Query: 305 R-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
           R A V+P+  +  + L  C++   +  G ++        +  N+    S+V +  + G L
Sbjct: 233 REANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDL 292

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
             AC +   +    D+V W  ++     +GD
Sbjct: 293 SSACILFGEMHT-RDVVAWNAMISGYAQHGD 322


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/543 (38%), Positives = 332/543 (61%), Gaps = 7/543 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +++ YA      + Y   +F ++       +  ++ G A +   + A+  +R++  
Sbjct: 456 VGNSLVDMYA--KFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQL 513

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D +  S  L AC+ +  +    +IHS+++R G L+D +L   ++DVY + G +  
Sbjct: 514 EGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKG-LSDLVLQNGIVDVYGECGNVDY 572

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A ++F+ +  +D+ SW ++I+      LA+EA++LF  MK  GV +P+ ++++  L+A  
Sbjct: 573 AARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGV-EPDSISLVSILSAAA 631

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L A K+G +IH ++  +   +   + + ++DMYA+CG L+K+  VF+ I+  K LV W 
Sbjct: 632 SLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIR-NKDLVLWT 690

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-N 340
           +M+ A+ +HG G  A++LF +M    + PD ++++A L AC+H+GL+++G R   SM   
Sbjct: 691 SMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYE 750

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             ++P  +HY  +VDLLGRA  L+EA   VK + +     +W  LLGACQ++ + E+ EI
Sbjct: 751 YQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEI 810

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A++KL+EM   N G++VL+SN+YAA  RW DV  VR  MK   +KK PG S+IEVG  +H
Sbjct: 811 AAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVH 870

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKI-KEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
            F   DKSH +  EIY KL +I  K+ KE GY A T  VLH+  EEEK   L  HSE+LA
Sbjct: 871 TFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLA 930

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +A+G+++T E  S+++ KNLR+C DCH+  KLISK + RE+++RD  RFH FK G CSC 
Sbjct: 931 IAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCG 990

Query: 580 DYW 582
           D W
Sbjct: 991 DVW 993



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 180/352 (51%), Gaps = 6/352 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  YA     ++  A  +F  ++   T  +N++L G   +     A+ +Y +M  
Sbjct: 355 VANALIAMYA--RFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRD 412

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              + D +     + A AR       +QIH++ +++G  +D  +G +L+D+YAK   +  
Sbjct: 413 AGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKY 472

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
              +FD+M  +D+ SW  +IAG AQ    S A++LF+ +++EG+   + + +   L AC 
Sbjct: 473 MDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGI-DLDVMMISSILLACS 531

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L       +IH YI  + L  ++V+ N ++D+Y +CG +D A  +F+ I+  K +V+W 
Sbjct: 532 GLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEF-KDVVSWT 589

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
           +M+  +  +G    ALELF  M   GV+PD +S ++ L A      +  G  +   +   
Sbjct: 590 SMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRK 649

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           G         ++VD+  R G L+++ ++   +    D+VLW +++ A  ++G
Sbjct: 650 GFVLEGSLASTLVDMYARCGTLEKSRNVFNFIR-NKDLVLWTSMINAYGMHG 700



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 192/385 (49%), Gaps = 9/385 (2%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           +++L+ C S  A+S    +Q+ AH+ T+    + +F + ++++  Y       L  A  L
Sbjct: 118 SSVLELCGSKKALSEG--QQVHAHMITSNALFNSVF-LSTRLVFMYG--KCGCLVDAEKL 172

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F  +   +   +NA++     + +P  ++  YR+M       DA T    LKAC  +   
Sbjct: 173 FDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDR 232

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-DIASWNALIAG 183
               ++H   ++ G+++   +  +++ +Y K  ++  A+++FD M  + D+ SWN++I+ 
Sbjct: 233 RCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 292

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            +    + EA+ LF  M+ +    PN  T + AL AC      K+G  IH  + +    +
Sbjct: 293 YSSNGQSIEALRLFGEMQ-KASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI 351

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           NV V NA+I MYA+ G + +A  +F N+    + ++WN+M+  F  +G    AL+ + +M
Sbjct: 352 NVFVANALIAMYARFGKMGEAANIFYNMDDWDT-ISWNSMLSGFVQNGLYHEALQFYHEM 410

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
             AG KPD V+ ++ + A   +G   +G+++       G+  +++   S+VD+  +   +
Sbjct: 411 RDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSM 470

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGA 388
           +   D +       D+V W T++  
Sbjct: 471 KYM-DCIFDKMPDKDVVSWTTIIAG 494



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 171/348 (49%), Gaps = 11/348 (3%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQ 98
           V + I+  Y  +  N+L  A  LF ++  P   D   +N+++   + + +   A+  + +
Sbjct: 253 VANSIVGMY--TKCNDLNGARQLFDRM--PEKEDVVSWNSMISAYSSNGQSIEALRLFGE 308

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           M + S   +  T   AL+AC     + + + IH+ VL+  +  +  +   L+ +YA+ G+
Sbjct: 309 MQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGK 368

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           +  A  +F  M   D  SWN++++G  Q  L  EA+  +  M+  G  KP+ V V+  +A
Sbjct: 369 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ-KPDLVAVISIIA 427

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           A    G    G +IH Y  +  LD ++ V N+++DMYAK   +     +FD +   K +V
Sbjct: 428 ASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVV 486

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W T++   A +G   RALELF ++   G+  D +   + L AC+   L+     + + +
Sbjct: 487 SWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYI 546

Query: 339 ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
              G+   +   G +VD+ G  G +  A  + + +    D+V W +++
Sbjct: 547 IRKGLSDLVLQNG-IVDVYGECGNVDYAARMFELIEF-KDVVSWTSMI 592


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/530 (38%), Positives = 312/530 (58%), Gaps = 38/530 (7%)

Query: 89  PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
           P   +  +R+M     + + +T S  L ACA +  L    +IH   +RHG + +  + + 
Sbjct: 160 PRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSA 219

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDI---------------------------------- 174
           L+ +YAK   +  A+ VFD M  RD+                                  
Sbjct: 220 LVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRAD 279

Query: 175 -ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
            A+WNA+I G  +   + EAV++F++M+  G FKPNE+T+   L AC      + G +IH
Sbjct: 280 EATWNAVIGGCMENGRSEEAVEMFRKMQKMG-FKPNEITISSILPACSFSENLRMGKEIH 338

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            Y+       ++    A++ MYAKCG L+ +  VFD ++ RK +V WNTM++A A+HG+G
Sbjct: 339 CYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMR-RKDVVAWNTMIIANAMHGNG 397

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGS 352
             AL LF++M  + V+P+ V++   L  C+H+ LV++GV++FNSM  +  V+P+  HY  
Sbjct: 398 KEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSC 457

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           VVD+  RAGRL EA   ++ + M      W  LL AC++Y +VE+A+I+++KL E+  NN
Sbjct: 458 VVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNN 517

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW 472
            G++V L N+    + W +  +VR  MK R + K PG S+++VG  +H F   DKS+++ 
Sbjct: 518 PGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIES 577

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
            +IY  LDE++ K+K  GY   T  VL DI +EEK  +LC HSEKLAVAFG+++ +  ++
Sbjct: 578 DKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQST 637

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           I+VFKNLRIC DCH+ IK +SKV    I+VRD +RFH FK+G CSCKD W
Sbjct: 638 IRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 170/373 (45%), Gaps = 20/373 (5%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF  I  P     + ++  L        A+  Y  +     + D      A KACA 
Sbjct: 31  ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 90

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
                   ++H    R G ++D  +G  L+  Y K   +  A++VFD++ VRD+ SW +L
Sbjct: 91  SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 150

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
            +   +     + +D+F+ M   GV KPN +TV   L AC  L   K G +IH +     
Sbjct: 151 SSCYVKCGFPRKGMDVFREMGWSGV-KPNPMTVSSILPACAELKDLKSGKEIHGFAVRHG 209

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           + +N+ VC+A++ +YAKC  + +A  VFD +   + +V+WN ++ A+  + +  +   LF
Sbjct: 210 MVVNLFVCSALVSLYAKCLSVREARMVFD-LMPHRDVVSWNGVLTAYFKNKEYEKGFSLF 268

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M R GV+ D+ ++ A +  C   G  ++ V +F  M   G KPN     S++      
Sbjct: 269 LKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSIL------ 322

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
                AC   +++ MG ++         C ++   ++ ++ S   +      CGD  L  
Sbjct: 323 ----PACSFSENLRMGKEI--------HCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSR 370

Query: 421 NLYAAYERWDDVG 433
           N++    R D V 
Sbjct: 371 NVFDMMRRKDVVA 383



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NAV+ G   + +   AV  +R+M +   + + +T S  L AC+    L    +IH +V 
Sbjct: 283 WNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVF 342

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           RH  + D    T LL +YAK G++  ++ VFD M  +D+ +WN +I   A      EA+ 
Sbjct: 343 RHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALF 402

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL---DMNVVVCNAVI 252
           LF +M +  V +PN VT  G L+ C H    +EG +I   +  + L   D N   C  V+
Sbjct: 403 LFDKMLLSRV-QPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSC--VV 459

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           D+Y++ G L++A++    +    +   W  ++ A  V+
Sbjct: 460 DIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVY 497



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 120/244 (49%), Gaps = 3/244 (1%)

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           LG  L+ V   VG+   A+++FD +   D  + + LI+ L    L++EA+ ++  ++  G
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
           + KP+    L A  AC   G      ++H+      +  +V V NA+I  Y KC  ++ A
Sbjct: 74  I-KPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGA 132

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
             VFD++  R  +V+W ++   +   G   + +++F +MG +GVKP+ ++  + L AC  
Sbjct: 133 RRVFDDLVVR-DVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAE 191

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
              +  G  +       G+  N+    ++V L  +   ++EA  +V  +    D+V W  
Sbjct: 192 LKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREA-RMVFDLMPHRDVVSWNG 250

Query: 385 LLGA 388
           +L A
Sbjct: 251 VLTA 254


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/527 (37%), Positives = 319/527 (60%), Gaps = 4/527 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L+YA  +F  I + + N +NA++ G A S+ P  ++  + QM       D+ T    L A
Sbjct: 196 LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 255

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C+++ +L    ++H  ++R+    D  +  ++L +Y   GE+ + + +FD M  + + SW
Sbjct: 256 CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSW 315

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N +I G  Q      A+ +F++M + G+ +   ++++    AC  L + + G + H Y  
Sbjct: 316 NTVITGYLQNGFPDRALGVFRQMVLYGI-QLCGISMMPVFGACSLLPSLRLGREAHAYAL 374

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  L+ +  +  ++IDMYAK G + ++ +VF+ +K  KS  +WN M+M + +HG    A+
Sbjct: 375 KHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKSTASWNAMIMGYGIHGLAKEAI 433

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
           +LFE+M R G  PDD+++L  L ACNH+GL+ +G+R  + M ++ G+KPN+KHY  V+D+
Sbjct: 434 KLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDM 493

Query: 357 LGRAGRLQEACDIV-KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LGRAG+L +A  +V + +S   D+ +W++LL +C+++ ++EM E  + KL E+      +
Sbjct: 494 LGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPEN 553

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +VLLSNLYA   +W+DV +VR+ M    ++K  G S+IE+   +  F   ++    + EI
Sbjct: 554 YVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEI 613

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
                 +  KI + GY   T  V HD+ EEEK   L  HSEKLA+ +GLI TSE T+I+V
Sbjct: 614 KSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRV 673

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +KNLRIC DCH+  KLISKV  REI+VRD  RFH FK+G CSC DYW
Sbjct: 674 YKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 134/265 (50%), Gaps = 4/265 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKAC 118
           A  +F+  N  +   +N ++ G +            RQML G    ++D +T   A+  C
Sbjct: 96  AQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVC 155

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
                L    ++H + L+  F+ + L+    +  YAK G +  A++VF  +  + + SWN
Sbjct: 156 FHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWN 215

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ALI G AQ N    ++D   +MK+ G+  P+  TV   L+AC  L + + G ++H +I  
Sbjct: 216 ALIGGHAQSNDPRLSLDAHLQMKISGLL-PDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 274

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L+ ++ V  +V+ +Y  CG L     +FD ++  KSLV+WNT++  +  +G   RAL 
Sbjct: 275 NWLERDLFVYLSVLSLYIHCGELCTVQALFDAME-DKSLVSWNTVITGYLQNGFPDRALG 333

Query: 299 LFEQMGRAGVKPDDVSYLAALCACN 323
           +F QM   G++   +S +    AC+
Sbjct: 334 VFRQMVLYGIQLCGISMMPVFGACS 358



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 134/271 (49%), Gaps = 10/271 (3%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           EL    ALF  +   S   +N V+ G   +  P  A+  +RQM+    +   ++      
Sbjct: 296 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 355

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC+ + +L    + H++ L+H    DA +  +L+D+YAK G I  + KVF+ +  +  AS
Sbjct: 356 ACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS 415

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WNA+I G     LA EA+ LF+ M+  G   P+++T LG L AC H G   EG +  + +
Sbjct: 416 WNAMIMGYGIHGLAKEAIKLFEEMQRTG-HNPDDLTFLGVLTACNHSGLIHEGLRYLDQM 474

Query: 237 REE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVF-DNIKCRKSLVTWNTMVMAFAVHGD-- 292
           +    L  N+     VIDM  + G LDKA  V  + +     +  W +++ +  +H +  
Sbjct: 475 KSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLE 534

Query: 293 -GPR-ALELFEQMGRAGVKPDDVSYLAALCA 321
            G + A +LFE       KP++   L+ L A
Sbjct: 535 MGEKVAAKLFELEPE---KPENYVLLSNLYA 562



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 155/347 (44%), Gaps = 13/347 (3%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLR----GSHRSDALTCSFALKACARVLALFETLQIH 131
           +N+++R  + +     + L   +M+     G+   D  T    L  CAR   +     +H
Sbjct: 6   WNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVH 65

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
              ++     + +L   L+D+Y+K G I +A+ +F     +++ SWN ++ G +      
Sbjct: 66  GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTH 125

Query: 192 EAVDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
              D+ ++M   G   K +EVT+L A+  C H        ++H Y  ++    N +V NA
Sbjct: 126 GTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANA 185

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
            +  YAKCG L  A  VF  I+  K++ +WN ++   A   D   +L+   QM  +G+ P
Sbjct: 186 FVASYAKCGSLSYAQRVFHGIR-SKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLP 244

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL---QEAC 367
           D  +  + L AC+    +  G  +   +    ++ ++  Y SV+ L    G L   Q   
Sbjct: 245 DSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALF 304

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           D ++  S    +V W T++      G  + A    R++V  G   CG
Sbjct: 305 DAMEDKS----LVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCG 347



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKME---GVFKPNEVTVLGALAACGHLGAWKE 228
           R+  SWN++I   +    + E+  L   M  E   G F P+  T++  L  C        
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G  +H +  + RLD  +V+ NA++DMY+KCG +  A  +F  +   K++V+WNTMV  F+
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF-KMNNNKNVVSWNTMVGGFS 119

Query: 289 VHGDGPRALELFEQM--GRAGVKPDDVSYLAALCACNHAGLV 328
             GD     ++  QM  G   VK D+V+ L A+  C H   +
Sbjct: 120 AEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 161


>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
          Length = 613

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/533 (37%), Positives = 322/533 (60%), Gaps = 10/533 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNA-----VLWYRQMLRGSHRSDALTCS 112
           +AYA ++F  ++ P   D+N ++RG   ++          +  +  M+      D+ T  
Sbjct: 83  MAYAASIFAALDDPEAFDYNTLMRGYVAAAGGGGRDPAAALRLFVDMVDDGVEPDSYTFP 142

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM--G 170
           F  KACA++ AL E  Q+  H+++ GF  D     +L+  Y K GE   A++ F++M   
Sbjct: 143 FVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDD 202

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            +  ASW+AL+A   +    +E V+ F  M   G ++P+E +++ AL+AC HLGA   G 
Sbjct: 203 EQTTASWSALLAAYTRAGRWAECVESFGAMVRAG-WRPDESSMVSALSACAHLGAHDVGR 261

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            IH  +      +N  +  +++DMYAKCG ++ A  VFD +   K+  T++ MV   A+H
Sbjct: 262 SIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMD-DKNAWTYSAMVSGLALH 320

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKH 349
           GDG +ALE+F+ M R G +PD   Y+  L AC+ AGL+++G+R F+ M     + PN +H
Sbjct: 321 GDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQH 380

Query: 350 YGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           YG +VDL+ RAGRL +A  ++ S+  G     W++LL AC+++G++E+AE A ++L  +G
Sbjct: 381 YGCMVDLMARAGRLDDARALIGSMPTGPTDTAWRSLLNACRIHGNLELAERALQELERLG 440

Query: 410 SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
           + N GD+++LS+++A     D     R    +R + + PG+S +EV G  H+F + D+SH
Sbjct: 441 ATNAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSH 500

Query: 470 VKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSE 529
            +  +IYE L ++ ++++  GY   TS +  D GEEEK   +  HS+KLA+AFGL+ST E
Sbjct: 501 PRADDIYEMLHQMEWQLRFEGYTPDTSELALDAGEEEKRRVVAAHSQKLAMAFGLLSTPE 560

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
              ++V  NLR+ ++CH    LIS+++ REI+VRDR RFHRFK GACSC++YW
Sbjct: 561 GAPVRVVTNLRMSKECHAYSALISEIFGREIVVRDRNRFHRFKRGACSCRNYW 613


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/608 (35%), Positives = 336/608 (55%), Gaps = 45/608 (7%)

Query: 10  KCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFP--VRSKIIEFYALSPLNELAYAHALFRQ 67
           +CS    +  IH + L+  L       +K     + S   +F        L YA  +F  
Sbjct: 52  RCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDF--------LPYAQIVFDG 103

Query: 68  INAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET 127
            + P T  +N ++RG + S +P  ++L Y++ML  S   +A T    LKAC+ + AL ET
Sbjct: 104 FDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEET 163

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA-- 185
            QIH+ + + G+  D     +L++ YA  G    A  +FD +   D  SWN++I G A  
Sbjct: 164 TQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKA 223

Query: 186 -----------------------------QGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
                                        Q  +  EA+ LF  M+   V +P+ V++  A
Sbjct: 224 GKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDV-EPDNVSLANA 282

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
           L+AC  LGA ++G  IH Y+ + R+ M+ V+   +IDMYAKCG + +A EVF NI+ RKS
Sbjct: 283 LSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQ-RKS 341

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFN 336
           +  W  ++  +A HG G  A+  F +M + G+KP+ +++   L AC++ GLV++G  +F 
Sbjct: 342 VQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFY 401

Query: 337 SMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395
           +M  +  +KP ++HYG VVDLL RAG L EA   ++ + +  + V+W  LL AC+++ ++
Sbjct: 402 NMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNI 461

Query: 396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEV 455
           E+ E     L+ +   + G +V  +N++A  ++WD     R+ MK + V KVPG S I +
Sbjct: 462 ELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISL 521

Query: 456 GGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA-GTSCVLHDIGEEEKENALCYH 514
            G  H+F   D+SH +  +I  K   +  K++E GY       +L  + ++E+E  +  H
Sbjct: 522 EGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQH 581

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SEKLA+ +GLI T   T+I++ KNLR+C+DCH V KLISK+Y R+I++RDR RFH F+DG
Sbjct: 582 SEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDG 641

Query: 575 ACSCKDYW 582
            CSC DYW
Sbjct: 642 KCSCGDYW 649


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/508 (40%), Positives = 303/508 (59%), Gaps = 4/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++ ++ G  ++ +P  A+  Y +M R    +D +     ++ACA          +H ++L
Sbjct: 172 WSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLL 231

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           RH    D ++ T+L+D+YAK G    A++VF+ M  R+  SW+ALI+ LAQ   A EA+ 
Sbjct: 232 RHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALG 291

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF+ M++ G   PN   V+GAL AC  LG  K G  IH +I    L+++ +V  AVIDMY
Sbjct: 292 LFRMMQVSG-LHPNSGPVVGALLACSDLGLLKLGKSIHGFILRT-LELDRMVGTAVIDMY 349

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCG L  A  +FD +  R  L++WN M+     HG G  AL LF++M R  V+PD  ++
Sbjct: 350 SKCGSLSSAQMLFDKVVSR-DLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATF 408

Query: 316 LAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            + L A +H+GLV++G   FN M N  G++P  KH   +VDLL R+G ++EA  +V S+ 
Sbjct: 409 ASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLH 468

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
               + +   LL  C     +E+ E  + K++E+   + G   L+SNLYAA + W  V  
Sbjct: 469 SKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVRE 528

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VRK MK+   KK PG S IE+ G +H F   D+SH + R+I + + ++  ++++ GY   
Sbjct: 529 VRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYIPK 588

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T  V HD+ E  KE  L  HSE+LA AFGL++TS  T + V KNLR+C DCHD IK +SK
Sbjct: 589 TEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCHDAIKYMSK 648

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +REI+VRD  RFH FKDGACSC DYW
Sbjct: 649 IADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 169/326 (51%), Gaps = 6/326 (1%)

Query: 69  NAPST-NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET 127
            +PS+   +NA+L   +  + P  A+  +R  L  + R D+ T + AL ACAR+  L   
Sbjct: 64  TSPSSIPAWNALLAAHSRGASPHEALRVFRA-LPPAARPDSTTFTLALSACARLGDLATG 122

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
             +       G+  D  + +++L++YAK G +  A KVFD M  RD  +W+ ++ G    
Sbjct: 123 EVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNA 182

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
               +A++++ RM+ +G  + +EV ++G + AC   G  + G  +H Y+    + M+VV+
Sbjct: 183 GQPVQAIEMYMRMRRDG-LEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVI 241

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
             +++DMYAK GL D+A  VF+ +  R   V+W+ ++   A +G+   AL LF  M  +G
Sbjct: 242 STSLVDMYAKNGLFDQARRVFELMPHRND-VSWSALISQLAQYGNADEALGLFRMMQVSG 300

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
           + P+    + AL AC+  GL+  G  +   +    ++ +     +V+D+  + G L  A 
Sbjct: 301 LHPNSGPVVGALLACSDLGLLKLGKSIHGFILRT-LELDRMVGTAVIDMYSKCGSLSSAQ 359

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYG 393
            +   V +  D++ W  ++  C  +G
Sbjct: 360 MLFDKV-VSRDLISWNVMIACCGAHG 384



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 130/257 (50%), Gaps = 6/257 (2%)

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFD--EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           +L + L   YA+ G++ +A+            I +WNAL+A  ++G    EA+ +F+   
Sbjct: 37  ILSSCLATAYARAGDLAAAESTLATAPTSPSSIPAWNALLAAHSRGASPHEALRVFR--A 94

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           +    +P+  T   AL+AC  LG    G+ + +         ++ VC++V+++YAKCG +
Sbjct: 95  LPPAARPDSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAM 154

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           D A +VFD ++ ++  VTW+TMV  F   G   +A+E++ +M R G++ D+V  +  + A
Sbjct: 155 DDAVKVFDRMR-KRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQA 213

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C   G    G  +   +    ++ ++    S+VD+  + G   +A  + + +    D V 
Sbjct: 214 CAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRND-VS 272

Query: 382 WQTLLGACQLYGDVEMA 398
           W  L+     YG+ + A
Sbjct: 273 WSALISQLAQYGNADEA 289


>gi|242062828|ref|XP_002452703.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
 gi|241932534|gb|EES05679.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
          Length = 622

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/529 (37%), Positives = 322/529 (60%), Gaps = 9/529 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSK----PTNAVLWYRQMLRGSHRSDALTCSFALK 116
           A ++F  +  P   D+N ++RG     +    P  A+  Y  ML      D+ T  F LK
Sbjct: 96  AASIFESLVEPEAFDYNTLMRGHVGGGRGDREPAAALRLYVDMLEAGVGPDSYTFPFVLK 155

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD--EMGVRDI 174
           ACA++ +L +  Q+ +H+ + G   D  +  +L+  Y K GE   A+  FD  E   R  
Sbjct: 156 ACAQLASLQQGRQLQAHIEKLGLQHDEHVQNSLISFYGKCGEPAMARLAFDRVEDEERTT 215

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
           ASW+AL+A   +  L  E ++ F  M ++G ++P+E +++ A++AC HLGA+  G  IH 
Sbjct: 216 ASWSALLAAYTKAGLWGECLESFGAMVLDG-WRPDESSMVSAISACAHLGAFDVGRSIHC 274

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            +      +N ++  +++DMYAKCG ++KA  VFD +   K+   ++ M+   A+HGDG 
Sbjct: 275 ALLRNTARLNTIMQTSLVDMYAKCGSIEKAAAVFDAMD-DKNAWAYSAMLSGLALHGDGR 333

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSV 353
           +AL++F+ M R G  PD  +Y+  L AC+ AGL++DG+R F+ M       PN +HYG +
Sbjct: 334 KALQVFDAMVREGHAPDAAAYVGVLNACSRAGLLEDGLRCFDRMRLEHKFAPNAQHYGCM 393

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VDL+ RAGRL +A  ++ S+  G     W++LL AC+++GD+++AE A  +L  +G+ N 
Sbjct: 394 VDLMARAGRLDDARALIGSMPTGPTDTAWRSLLNACRIHGDLDLAESALEELRSLGAANA 453

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
           GD+V++++++A  + W      R    +  + + PGFS +EV G +H+F + D SH + R
Sbjct: 454 GDYVIVADMHARAKNWAAAAAFRTEAVDWGLAQSPGFSAVEVRGELHRFVSQDMSHPRTR 513

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           +IYE L ++ ++++  GY   TS V  D+GEEEK + +  HS+KLA+AFGL+ST E   +
Sbjct: 514 DIYEMLHQMEWQLRFDGYRPDTSEVALDVGEEEKRHVVAAHSQKLAMAFGLLSTPEGAPV 573

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +V  NLR+ ++CH    LIS+++ REI++RDR R HRF+ GAC+C+DYW
Sbjct: 574 RVVTNLRMSKECHAYSALISEIFGREIVIRDRNRLHRFRRGACTCRDYW 622


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/504 (38%), Positives = 306/504 (60%), Gaps = 3/504 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA L GL         +  +  ML      +  T    L +C+ +  +    Q+H+H++
Sbjct: 484 WNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHII 543

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           ++    +  + T L+D+YAK   +  A   F+ + VRD+ +W  +I   AQ N   +A++
Sbjct: 544 KNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALN 603

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
            F++M+ EGV KPNE T+ G L+ C  L + + G ++H  + +     ++ V +A++DMY
Sbjct: 604 YFRQMQQEGV-KPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMY 662

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG +++A  +F+ +  R+  + WNT++  +A +G G +AL  F  M   G+ PD V++
Sbjct: 663 AKCGCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTF 721

Query: 316 LAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
              L AC+H GLV++G   FNSM  + G+ P + H   +VD+LGR G+  E  D ++ + 
Sbjct: 722 TGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQ 781

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +  + ++W+T+LGA +++ ++ + E A+ KL E+       ++LLSN++A   RWDDV R
Sbjct: 782 LSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKR 841

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VR  M ++ VKK PG S++E  G +H F + D SH + +EI+ KLDE+  ++    Y   
Sbjct: 842 VRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPK 901

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T  VLH++GE EK+  L +HSE+LA+ F LISTS    I++FKNLRICRDCHDV+K IS 
Sbjct: 902 TEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISS 961

Query: 555 VYNREIIVRDRVRFHRFKDGACSC 578
           + N+EI+VRD  RFH FK+GACSC
Sbjct: 962 ITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 6/337 (1%)

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
           AYA  +  ++       + A+++GL       +++  +++M       +  T +  LKAC
Sbjct: 164 AYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKAC 223

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           +  +AL    Q+H+   + G L D  +G+ L+D+YAK GEI  A K+F  M  ++  +WN
Sbjct: 224 SLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWN 283

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
            L+ G AQ    +  + LF  M ME   K NE T+   L  C +    K+G  IH  I +
Sbjct: 284 VLLNGYAQRGDVTGVLKLFCSM-MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIK 342

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
              + N  +   ++DMY+KCGL   A  VF  IK +  +V W+ ++      G    +++
Sbjct: 343 CGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALITCLDQQGQSEESIK 401

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LF  M      P+  +  + L A  + G +  G  +   +   G + ++    ++V +  
Sbjct: 402 LFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYM 461

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGA---CQLY 392
           + G + +   + +S+ +  D++ W   L     C +Y
Sbjct: 462 KNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCGMY 497



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 156/314 (49%), Gaps = 4/314 (1%)

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
           S  L+ CA   +L     IH  +++     D+ L  +L++VYAK      A+ V  +M  
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           RD+ SW ALI GL     A++++ LF+ M+ EG+  PNE T+   L AC    A   G +
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIM-PNEFTLATGLKACSLCMALDLGKQ 234

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +H    +  L +++ V +A++D+YAKCG ++ A ++F  +   ++ VTWN ++  +A  G
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLLNGYAQRG 293

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
           D    L+LF  M    VK ++ +    L  C ++  +  G  + + +  CG + N     
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGC 353

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +VD+  + G   +A  + K++    D+V+W  L+      G  E + I    L+ +G  
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALITCLDQQGQSEES-IKLFHLMRLGDT 411

Query: 412 NCGDFVLLSNLYAA 425
               + + S L AA
Sbjct: 412 LPNQYTICSLLSAA 425



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 139/284 (48%), Gaps = 8/284 (2%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTND--FNAVLRGLAHSSKPTNAVLWYRQM 99
           V S +++ YA     E+  A  +F  I  P  ND  +N +L G A     T  +  +  M
Sbjct: 250 VGSALVDLYA--KCGEIELASKMF--IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSM 305

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
           +    + +  T +  LK CA    L +   IHS +++ G+  +  +G  L+D+Y+K G  
Sbjct: 306 MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLA 365

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
           + A  VF  +   DI  W+ALI  L Q   + E++ LF  M++ G   PN+ T+   L+A
Sbjct: 366 IDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL-GDTLPNQYTICSLLSA 424

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
             + G  + G  IH  + +   + +V V NA++ MY K G +    ++++++  R  L++
Sbjct: 425 ATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDR-DLIS 483

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           WN  +      G   R L +F  M   G  P+  ++++ L +C+
Sbjct: 484 WNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 164/328 (50%), Gaps = 17/328 (5%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +Q+ AH+    Q     F V + +I+ YA      L  A   F +++      +  ++  
Sbjct: 536 RQVHAHIIKN-QLDDNNF-VCTALIDMYA--KCMYLEDADVAFNRLSVRDLFTWTVIITN 591

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A +++   A+ ++RQM +   + +  T +  L  C+ + +L    Q+HS V + G ++D
Sbjct: 592 YAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSD 651

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G+ L+D+YAK G +  A+ +F+ +  RD  +WN +I G AQ    ++A+  F+ M  
Sbjct: 652 MFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLD 711

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEG-DKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           EG+  P+ VT  G L+AC H G  +EG +  +   R+  +   V  C  ++D+  + G  
Sbjct: 712 EGI-SPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKF 770

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD---GPRAL-ELFEQMGRAGVKP-DDVSYL 316
           D+  +    ++  ++ + W T++ A  +H +   G +A  +LFE      ++P ++ SY+
Sbjct: 771 DELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFE------LQPEEESSYI 824

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVK 344
                    G  DD  R+ + M++ GVK
Sbjct: 825 LLSNIFATEGRWDDVKRVRSLMSSKGVK 852


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/611 (35%), Positives = 352/611 (57%), Gaps = 39/611 (6%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           AL+++C +  A+S    ++L +H+ +     S+   + + +IE Y       L YA  LF
Sbjct: 65  ALIRRCGAANAISAA--RRLHSHILSLPHSNSQPPFLANLLIEMYG--KCGRLPYARELF 120

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA-- 123
             + + + + +   +   +H+   + A++++R+M +   R D +T S  L A A++ A  
Sbjct: 121 ESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAA 180

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR----------- 172
           + +  +IH +    G L + ++GT ++ +Y K G +  A+  F+E+  +           
Sbjct: 181 IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 240

Query: 173 --------------------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
                               D   WNA+IA  AQ     +A+DL++ M       P + T
Sbjct: 241 YKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGT 300

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
            +  +  C  L A K+G  IH  +R    D N++V NA++ MY KCG LD+A +VF ++K
Sbjct: 301 FVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMK 360

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K  ++WNT++ ++A HG   +AL L+++M   GVKP +V+++  L AC+H GLV DG+
Sbjct: 361 L-KDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGL 419

Query: 333 RLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             F  M +   +KP++ H+G ++DLLGR GRL EA  ++KS+ +  + V W +LLGAC+ 
Sbjct: 420 DYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKT 479

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           +GD++    A+ ++V+      G +VLLSN+YAA  RW DV ++RK M  R VKK PG S
Sbjct: 480 HGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKS 539

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
           +IE+G V+H+F + D SH +  EIY +L +++ ++K  GY   TS V HD+ EEEKE+ L
Sbjct: 540 WIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLL 599

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
             HSEKLA+ +G +     + +++ KNLR+C DCH   K +S++  R+I+VRD  RFH F
Sbjct: 600 VCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLF 659

Query: 572 KDGACSCKDYW 582
           ++G+CSC+DYW
Sbjct: 660 ENGSCSCRDYW 670


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/458 (41%), Positives = 290/458 (63%), Gaps = 8/458 (1%)

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
           S++  +G   D+ + T    +Y     I +A  VF+++       WN +I G A      
Sbjct: 500 SNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFL 559

Query: 192 EAVDLFKRMKMEGVFK------PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
            +++L+ +M  +G+        PN V++L  L ACG+LGA ++G+  H Y+ +   + ++
Sbjct: 560 SSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDI 619

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           +V  A++DMY+KCG LD A  +FD     K LV W+ M+ ++ +HG G +A++LF+QM +
Sbjct: 620 LVATAIMDMYSKCGSLDLARCLFDE-TAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVK 678

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQ 364
           AGV+P  V++   L AC+H+GL+++G   F  M     +   + +Y  +VDLLGRAG+L 
Sbjct: 679 AGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLS 738

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           EA D+++++ +  D  +W +LLGAC+++ ++++AE  +  L  +   + G  VLLSN+YA
Sbjct: 739 EAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYA 798

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
           A  RW++V +VRK M  R   K+ GFS +E    +HKF   D+SH +W ++Y KL+E+  
Sbjct: 799 AKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAA 858

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
            +K  GY   T  VLHDI EE KE AL YHSE+LA+AFGLI+TS  T++++ KNLRIC D
Sbjct: 859 PMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGD 918

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH+ IKLISK+ NR I+VRD  RFHRF+DG CSC DYW
Sbjct: 919 CHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 184/429 (42%), Gaps = 62/429 (14%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           L Q C++  +VS +H +  +  +     F +KL  + +K     A         A  +F 
Sbjct: 10  LFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQA---------ARKVFD 60

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKACA--RVLA 123
           +   P+ + +N+ LR      +    +  +  M+       D  T   ALKACA  R+L 
Sbjct: 61  ETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLE 120

Query: 124 LFETLQIHSHVLRHGFL-------ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           L + +        HGF        +D  +G+ L+++Y+K G++  A KVF+E    D   
Sbjct: 121 LGKVI--------HGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVL 172

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFK---P--NEVTVLGALAACGHLGA-----W 226
           W +++ G  Q N   EA+ LF +M M   F    P  N +  L A   C  + A      
Sbjct: 173 WTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKM 232

Query: 227 KEGDKI----------------------HEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
            E D I                      HE I E+R + N V   + +   A    L++ 
Sbjct: 233 PEKDVISWSTMIACYANNEAANEALNLFHEMI-EKRFEPNSVTVVSALQACAVSRNLEEG 291

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
            ++   I   K +V+W  ++  +A +G   +++ +F  M   G++PD V+ +  L A + 
Sbjct: 292 KKI-HKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSE 350

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
            G+    + L   +   G   N+    S+++L  + G L +A  + K + +  D+V+W +
Sbjct: 351 LGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIV-RDVVIWSS 409

Query: 385 LLGACQLYG 393
           ++ A  ++G
Sbjct: 410 MIAAYGIHG 418



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 131/261 (50%), Gaps = 15/261 (5%)

Query: 44  SKIIEFYALS--PLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           S+I+  +A+     N +  A  +F  I  P +  +N ++RG A   +  +++  Y +M+ 
Sbjct: 511 SRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMME 570

Query: 102 GSHRSD-------ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
              + D        ++    L AC  + AL +    HS+V++ GF  D L+ T ++D+Y+
Sbjct: 571 KGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYS 630

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G +  A+ +FDE   +D+  W+A+IA         +A+DLF +M   GV +P+ VT  
Sbjct: 631 KCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGV-RPSHVTFT 689

Query: 215 GALAACGHLGAWKEGDKIHEYIREERL---DMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
             L+AC H G  +EG    + + EE +    ++   C  ++D+  + G L +A ++ +N+
Sbjct: 690 CVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYAC--MVDLLGRAGQLSEAVDLIENM 747

Query: 272 KCRKSLVTWNTMVMAFAVHGD 292
                   W +++ A  +H +
Sbjct: 748 PVEPDASIWGSLLGACRIHNN 768



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 140/294 (47%), Gaps = 36/294 (12%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V S ++E Y  S   ++  A  +F +   P T  + +++ G   ++ P  A+  + QM+ 
Sbjct: 141 VGSALVELY--SKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVM 198

Query: 102 GS------HRSDALTCSFALKACARVLA-LF-------------------------ETLQ 129
                      ++L   +A   C ++ A LF                         E L 
Sbjct: 199 MDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALN 258

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +   ++   F  +++   + L   A    +   KK+      +D+ SW AL++G AQ  +
Sbjct: 259 LFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGM 318

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
           A +++ +F+ M  +G+ +P+ V V+  LAA   LG +++   +H Y+     + NV V  
Sbjct: 319 AYKSMGVFRNMLSDGI-QPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGA 377

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           ++I++Y+KCG L  A ++F  +  R  +V W++M+ A+ +HG G  ALE+F+QM
Sbjct: 378 SLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGRGGEALEIFDQM 430



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 159/359 (44%), Gaps = 45/359 (12%)

Query: 78  AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
           A+L G A +     ++  +R ML    + DA+     L A + +    + L +H +V+R 
Sbjct: 308 ALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS 367

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           GF ++  +G +L+++Y+K G +  A K+F  M VRD+  W+++IA         EA+++F
Sbjct: 368 GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIF 427

Query: 198 KRM--KMEGVFKPNEVTVLG------ALAAC----------------------GHLG--- 224
            +M   M+G+    ++++        A+ +C                      GH     
Sbjct: 428 DQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIF 487

Query: 225 ---AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
               ++  D     I    L  +  +      MY     +D A  VF++I    S + WN
Sbjct: 488 PTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFL-WN 546

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDD-------VSYLAALCACNHAGLVDDGVRL 334
            M+  FA  G    +LEL+ +M   G+KPD+       VS L+ L AC + G +  G   
Sbjct: 547 VMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWF 606

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            + +   G + ++    +++D+  + G L  A  +    + G D+V W  ++ +  ++G
Sbjct: 607 HSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETA-GKDLVCWSAMIASYGIHG 664


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/545 (36%), Positives = 322/545 (59%), Gaps = 8/545 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQ 98
           V+S ++  Y+     ELA    +   +     ND   +N+VL  L  S +   AV   R+
Sbjct: 154 VKSALVHMYSRCSHVELALQ--VLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRR 211

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           M+      D +T    +  CA++  L   L++H+ +LR G + D  +G+ L+D+Y K GE
Sbjct: 212 MVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGE 271

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           +++A+ VFD +  R++  W AL+    Q     E+++LF  M  EG   PNE T    L 
Sbjct: 272 VLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTL-PNEYTFAVLLN 330

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC  + A + GD +H  + +     +V+V NA+I+MY+K G +D ++ VF ++  R  ++
Sbjct: 331 ACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYR-DII 389

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS- 337
           TWN M+  ++ HG G +AL++F+ M  A   P+ V+++  L A +H GLV +G    N  
Sbjct: 390 TWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHL 449

Query: 338 MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
           M N  ++P ++HY  +V LL RAG L EA + +K+  +  D+V W+TLL AC ++ + ++
Sbjct: 450 MRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDL 509

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
               +  +++M  ++ G + LLSN+YA   RWD V  +RK M+ R++KK PG S++++  
Sbjct: 510 GRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRN 569

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            IH F +   +H +  +IY+K+ +++  IK  GY    + VLHD+ +E+KE  L YHSEK
Sbjct: 570 DIHVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEK 629

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LA+A+GL+       I++ KNLR+C DCH  +KLISKV NR IIVRD  RFH F+DG+C+
Sbjct: 630 LALAYGLMKIPSPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCT 689

Query: 578 CKDYW 582
           C D+W
Sbjct: 690 CLDHW 694



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/439 (21%), Positives = 196/439 (44%), Gaps = 27/439 (6%)

Query: 33  GQFQSKLFPVRSKIIEFYALSPLNELAY----------AHALFRQINAPSTNDFNAVLRG 82
           G+     F +R++      +S LN L +          A  LF  +   +   +N ++ G
Sbjct: 31  GKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAG 90

Query: 83  LAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
             H       ++ ++ M+   +   +    + AL AC+    + E +Q H  + + G + 
Sbjct: 91  YLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVC 150

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFK 198
              + + L+ +Y++   +  A +V D +    V DI S+N+++  L +     EAV++ +
Sbjct: 151 HQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLR 210

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
           RM  E V   + VT +G +  C  +   + G ++H  +    L  +  V + +IDMY KC
Sbjct: 211 RMVDECV-AWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKC 269

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G +  A  VFD ++ R ++V W  ++ A+  +G    +L LF  M R G  P++ ++   
Sbjct: 270 GEVLNARNVFDGLQNR-NVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVL 328

Query: 319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
           L AC     +  G  L   +   G K ++    +++++  ++G +  + ++   + +  D
Sbjct: 329 LNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDM-IYRD 387

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
           ++ W  ++     +G  + A    + +V   +  C ++V    + +AY     +G V++ 
Sbjct: 388 IITWNAMICGYSHHGLGKQALQVFQDMVS--AEECPNYVTFIGVLSAYSH---LGLVKEG 442

Query: 439 MKN-----RDVKKVPGFSY 452
                   R+ K  PG  +
Sbjct: 443 FYYLNHLMRNFKIEPGLEH 461


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/523 (37%), Positives = 312/523 (59%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A +++ ++       +N ++ GL  +  P+ A+    +M+      D +T   A   C+ 
Sbjct: 183 AMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSH 242

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L   LQ+H  + R G   D+ + + ++D+Y K G I++A+KVF+ +  +++ SW A+
Sbjct: 243 LKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAI 302

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +A  +Q     EA++ F  M+++G+  PNE T    L +C  + A   G  +H  I++  
Sbjct: 303 LAAYSQNGCFEEALNFFPEMEVDGLL-PNEYTFAVLLNSCAGISALGHGKLLHTRIKKSG 361

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
            + +++V NA+I+MY+K G ++ A +VF  + CR S +TW+ M+   + HG G  AL +F
Sbjct: 362 FEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDS-ITWSAMICGLSHHGLGREALVVF 420

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS-MANCGVKPNMKHYGSVVDLLGR 359
           ++M  A   P  V+++  L AC H G V +G    N  M   G++P ++HY  +V LL +
Sbjct: 421 QEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCK 480

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGRL EA + +KS  +  D+V W+TLL AC ++ +  + +  +  +++M   + G ++LL
Sbjct: 481 AGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILL 540

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YA  +RWD V ++RK M+ R+VKK PG S+IE+   IH F +  K+H +  +IYEK+
Sbjct: 541 SNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKV 600

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
            E++  I+  GY    + V HD+ +E+K   + YHSEKLA+A+GL+ T     I+V KNL
Sbjct: 601 QELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNL 660

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH  +KLISKV NR IIVRD  RFH F DG CSC DYW
Sbjct: 661 RMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/404 (21%), Positives = 188/404 (46%), Gaps = 8/404 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K + AHL  T Q         + +I  YA    +++  A  LF  +   +   + A++ G
Sbjct: 45  KMIHAHLIITNQATKDNIVQVNSLINLYA--KCDQIMVARILFDGMRKRNVVSWGALMAG 102

Query: 83  LAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
             H+      +  ++ M+   + R +    +  + +C+    + E  Q H + L+ G + 
Sbjct: 103 YFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVF 162

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
              +   L+ +Y++  ++  A  V+ E+   D+ S+N +I GL +    SEA+++  RM 
Sbjct: 163 HQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMV 222

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            E +   N VT + A   C HL   + G ++H  +     + +  V +A+IDMY KCG +
Sbjct: 223 DECIVWDN-VTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNI 281

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
             A +VF+ ++  K++V+W  ++ A++ +G    AL  F +M   G+ P++ ++   L +
Sbjct: 282 LNARKVFNRLQ-TKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNS 340

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C     +  G  L   +   G + ++    +++++  ++G ++ A  +   + +  D + 
Sbjct: 341 CAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEM-ICRDSIT 399

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           W  ++     +G    A +  +++  + +  C  +V    + +A
Sbjct: 400 WSAMICGLSHHGLGREALVVFQEM--LAAKECPHYVTFVGVLSA 441


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 306/508 (60%), Gaps = 9/508 (1%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G   +SK ++A   +R+M       D++T    +  C     L+    +H   +
Sbjct: 121 YNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECV 180

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + G  ++  +  + + +Y K G + S +++FDEM V+ + +WNA+I+G +Q  LA + ++
Sbjct: 181 KGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLE 240

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF++MK  GV  P+  T++  L++C HLGA K G ++ E +       NV + NA+I MY
Sbjct: 241 LFEQMKSSGVC-PDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMY 299

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           A+CG L KA  VFD I   KSLV+W  M+  + +HG G   L LF+ M + G++PD   +
Sbjct: 300 ARCGNLAKARAVFD-IMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVF 358

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +  L AC+H+GL D G+ LF +M     ++P  +HY  +VDLLGRAGRL EA + + S+ 
Sbjct: 359 VMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMP 418

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +  D  +W  LLGAC+++ +V+MAE+A  K++E    N G +VL+SN+Y+  +  + + R
Sbjct: 419 VEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWR 478

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R  M+ R  +K PG+SY+E  G +H F   D+SH +  E++  LDE+   + E   A  
Sbjct: 479 IRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVME--LAGN 536

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
             C   D GEE        HSE+LA+AFG++++   T I V KNLR+C DCH  IKL+SK
Sbjct: 537 MDC---DRGEEVSSTTR-EHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSK 592

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +R  +VRD  RFH FKDG CSCKDYW
Sbjct: 593 IVDRRFVVRDASRFHYFKDGVCSCKDYW 620



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 191/392 (48%), Gaps = 15/392 (3%)

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F + +A ++  +N  LR LA+ S  T ++  YR MLR     DA +  F LK+CA +   
Sbjct: 7   FVRNSAVASTSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLP 66

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE------MGVRDIASWN 178
               Q+H HV+R G  A+  + T L+ +Y K G +  A+KVF+E      +GV     +N
Sbjct: 67  VSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGV----CYN 122

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ALI+G    +  S+A  +F+RMK  GV   + VT+LG +  C        G  +H    +
Sbjct: 123 ALISGYTANSKVSDAAFMFRRMKETGV-SVDSVTILGLVPLCTVPEYLWLGRSLHGECVK 181

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
                 V V N+ I MY KCG ++    +FD +   K L+TWN ++  ++ +G     LE
Sbjct: 182 GGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPV-KGLITWNAVISGYSQNGLAYDVLE 240

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LFEQM  +GV PD  + ++ L +C H G    G  +   +   G  PN+    +++ +  
Sbjct: 241 LFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYA 300

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           R G L +A  +   + + + +V W  ++G   ++G  E        +++ G    G   +
Sbjct: 301 RCGNLAKARAVFDIMPVKS-LVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFV 359

Query: 419 LSNLYAAYERWDDVG-RVRKAMKNRDVKKVPG 449
           +     ++    D G  + +AMK R+ K  PG
Sbjct: 360 MVLSACSHSGLTDKGLELFRAMK-REYKLEPG 390



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 2/228 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF ++       +NAV+ G + +    + +  + QM       D  T    L +CA + A
Sbjct: 210 LFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGA 269

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
                ++   V  +GF  +  L   L+ +YA+ G +  A+ VFD M V+ + SW A+I  
Sbjct: 270 KKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGC 329

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-REERLD 242
                +    + LF  M   G+ +P+    +  L+AC H G   +G ++   + RE +L+
Sbjct: 330 YGMHGMGETGLTLFDDMIKRGI-RPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLE 388

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
                 + ++D+  + G LD+A E  D++        W  ++ A  +H
Sbjct: 389 PGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIH 436


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/543 (36%), Positives = 320/543 (58%), Gaps = 6/543 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +++FY  S  + +  A  LF ++       +N ++   A + +   ++  +R++  
Sbjct: 277 VANALLDFY--SKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQF 334

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                     +  L   A  L L    QIHS  +    +++ L+G +L+D+YAK  +   
Sbjct: 335 TRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGE 394

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A ++F ++  +    W ALI+G  Q  L  + + LF  M    +   +  T    L AC 
Sbjct: 395 ANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKI-GADSATYASILRACA 453

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
           +L +   G ++H  I       NV   +A++DMYAKCG + +A ++F  +  R S V+WN
Sbjct: 454 NLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNS-VSWN 512

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            ++ A+A +GDG  AL  FEQM  +G++P+ VS+L+ LCAC+H GLV++G++ FNSM   
Sbjct: 513 ALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQV 572

Query: 342 -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             ++P  +HY S+VD+L R+GR  EA  ++  +    D ++W ++L +C+++ + E+A  
Sbjct: 573 YKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIK 632

Query: 401 ASRKLVEM-GSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
           A+ +L  M G  +   +V +SN+YAA   WD VG+V+KA++ R ++KVP +S++E+    
Sbjct: 633 AADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKT 692

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H F  +D SH + +EI  KLDE+  +++E GY   ++C LH++ EE K  +L YHSE++A
Sbjct: 693 HVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIA 752

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +AF LIST + + I V KNLR C DCH  IK+ISK+ NREI VRD  RFH F DG+CSCK
Sbjct: 753 IAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCK 812

Query: 580 DYW 582
           DYW
Sbjct: 813 DYW 815



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 171/373 (45%), Gaps = 7/373 (1%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           + Q+  H+   G + S L  V + +++ Y  +    L  A  LF+ +       FNA+L 
Sbjct: 158 VAQVHGHVVKVG-YDSTLM-VCNSLLDSYCKT--RSLGLACHLFKHMAEKDNVTFNALLT 213

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
           G +      +A+  + +M     R    T +  L A  ++  +    Q+HS V++  F+ 
Sbjct: 214 GYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVW 273

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           +  +   LLD Y+K   IV A+K+F EM   D  S+N LI   A      E+++LF+ ++
Sbjct: 274 NVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQ 333

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
               F   +      L+   +    + G +IH           V+V N+++DMYAKC   
Sbjct: 334 FTR-FDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKF 392

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
            +A  +F ++   +S V W  ++  +   G     L+LF +M RA +  D  +Y + L A
Sbjct: 393 GEANRIFADL-AHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRA 451

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C +   +  G +L + +   G   N+    ++VD+  + G ++EA  + + + +  + V 
Sbjct: 452 CANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPV-RNSVS 510

Query: 382 WQTLLGACQLYGD 394
           W  L+ A    GD
Sbjct: 511 WNALISAYAQNGD 523



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 120/249 (48%), Gaps = 3/249 (1%)

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
           T++  Y K G + +A+ +FD M  R + +W  LI G AQ N   EA +LF  M   G+  
Sbjct: 78  TMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMV- 136

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           P+ +T+   L+      +  E  ++H ++ +   D  ++VCN+++D Y K   L  A  +
Sbjct: 137 PDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHL 196

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           F ++   K  VT+N ++  ++  G    A+ LF +M   G +P + ++ A L A      
Sbjct: 197 FKHM-AEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDD 255

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           ++ G ++ + +  C    N+    +++D   +  R+ EA  +   +    D + +  L+ 
Sbjct: 256 IEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLIT 314

Query: 388 ACQLYGDVE 396
            C   G VE
Sbjct: 315 CCAWNGRVE 323



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 122/246 (49%), Gaps = 2/246 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L+ A +LF  +   S   +  ++ G A  ++   A   +  M R     D +T +  L  
Sbjct: 89  LSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSG 148

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
                ++ E  Q+H HV++ G+ +  ++  +LLD Y K   +  A  +F  M  +D  ++
Sbjct: 149 FTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTF 208

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NAL+ G ++     +A++LF +M+  G F+P+E T    L A   +   + G ++H ++ 
Sbjct: 209 NALLTGYSKEGFNHDAINLFFKMQDLG-FRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVV 267

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +     NV V NA++D Y+K   + +A ++F  +      +++N ++   A +G    +L
Sbjct: 268 KCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCCAWNGRVEESL 326

Query: 298 ELFEQM 303
           ELF ++
Sbjct: 327 ELFREL 332



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 9/166 (5%)

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
           G LGA ++       + +E    NV+  N +I  Y K G L  A  +FD++  ++S+VTW
Sbjct: 56  GDLGAARK-------LFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSM-VQRSVVTW 107

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
             ++  +A H     A  LF  M R G+ PD ++    L        V++  ++   +  
Sbjct: 108 TMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVK 167

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            G    +    S++D   +   L  AC + K ++   D V +  LL
Sbjct: 168 VGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMA-EKDNVTFNALL 212


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/527 (38%), Positives = 306/527 (58%), Gaps = 33/527 (6%)

Query: 89  PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
           P  A+  +  +LR     D +  + AL  CAR  A     Q+H H  + G  +   +   
Sbjct: 56  PHLALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNG 115

Query: 149 LLDVYAKVGEIVSAKKVFD-------------------------------EMGVRDIASW 177
           L+  Y+  G +  A+KVFD                               +M  RD  SW
Sbjct: 116 LIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSW 175

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N +IA         EAV +F+ M      +P+ VT++  ++A  +LGA  +G   H Y+ 
Sbjct: 176 NTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVC 235

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
            + ++++  + +A+I+MY+KCG ++ A  VF+N    +S+ TWN M+  F   G   RAL
Sbjct: 236 RKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERAL 295

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVVDL 356
           ELF +M  +G  P+ +++   L AC+H G V++G+  F  M N   ++P++ HYG +VDL
Sbjct: 296 ELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDL 355

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
             RAG  ++A ++++ + M  D  +W+ L+GAC+ Y + E+ + A  +L+E   N+   +
Sbjct: 356 FCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHAGY 415

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSN+YA    W  V +VRK M N  V+KVPG S IE+ GVIH+F + DKSH + R++Y
Sbjct: 416 VLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRKRDVY 475

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEE-KENALCYHSEKLAVAFGLISTSEATSIQV 535
           E L EI  ++K  GYA  TS VL DI +E+ KE++L  HSE+LA+AFGLIST+  T I++
Sbjct: 476 EMLSEICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAPGTPIRI 535

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH+ IKL+SK+Y R I+VRD  RFHRF++G+CSC DYW
Sbjct: 536 VKNLRVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/524 (38%), Positives = 307/524 (58%), Gaps = 4/524 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACA 119
           A  LF ++       + A++ G    ++P  A+  YR M +  + +S+  T S AL A A
Sbjct: 203 ARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASA 262

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            + +L    +IH H++R G  +D ++  +LLD+Y K G I  A+ +FD+M  RD+ SW  
Sbjct: 263 AIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTT 322

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I    +     E   LF+ + M     PN+ T  G L AC  L A   G +IH Y+   
Sbjct: 323 MIHTYLKNGRREEGFALFRHL-MNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRV 381

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
             D      +A++ MY+KCG ++ A  VF+ I  +  L +W ++++ +A HG   +AL  
Sbjct: 382 GFDSFSSAASALVHMYSKCGDIENAKSVFE-ILPQPDLFSWTSLLVGYAQHGQHDKALHF 440

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLG 358
           FE + ++G KPD ++++  L AC HAGLVD G+  F+S+    G+   + HY  ++DLL 
Sbjct: 441 FELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLA 500

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG+  EA  I+  + +  D  +W  LLG C+++G++E+A+ A++ L E+   N   +V 
Sbjct: 501 RAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVT 560

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           L+N+YA+     +   +R+ M +R + K PG S+IE+   +H F   D SH K +EI E 
Sbjct: 561 LANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEY 620

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L E+  ++KE GY   T+ VLHD+  E+KE  L YHSEKLAVAFG+IST   T I+VFKN
Sbjct: 621 LSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKN 680

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR C DCH+ IK IS +  R+IIVRD  RFH F+ G+CSCKDYW
Sbjct: 681 LRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 144/303 (47%), Gaps = 34/303 (11%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           LK C +  AL E  Q+H+H+   G +    +   LLD+YAK G +V A+KVFDEM  RD+
Sbjct: 126 LKFCLKQRALKEGKQVHAHIKTSGSIG-LYISNRLLDMYAKCGSLVDAEKVFDEMVHRDL 184

Query: 175 ASWN-------------------------------ALIAGLAQGNLASEAVDLFKRMKME 203
            SWN                               A+I+G  Q N   EA++L++ M+  
Sbjct: 185 CSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKH 244

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
              K N+ T+  ALAA   + +   G KIH +I    LD + VV  +++DMY KCG +++
Sbjct: 245 DYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEE 304

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A  +FD ++ R  +V+W TM+  +  +G       LF  +  + + P+D ++   L AC 
Sbjct: 305 ARYIFDKMEER-DVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACA 363

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
                D G ++   M   G         ++V +  + G ++ A  + + +    D+  W 
Sbjct: 364 DLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQ-PDLFSWT 422

Query: 384 TLL 386
           +LL
Sbjct: 423 SLL 425



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 11/147 (7%)

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           EAV L  R++     KP     L  L  C    A KEG ++H +I+     + + + N +
Sbjct: 106 EAVQLLYRIE-----KPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNRL 159

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           +DMYAKCG L  A +VFD +   + L +WN M+  +   G+  +A  LF++M       D
Sbjct: 160 LDMYAKCGSLVDAEKVFDEM-VHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----D 214

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSM 338
           + S+ A +  C      ++ + L+  M
Sbjct: 215 NFSWTAIISGCVQHNRPEEALELYRLM 241


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/584 (36%), Positives = 337/584 (57%), Gaps = 15/584 (2%)

Query: 3   NLNALLQKCSSNGAVS---HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA 59
            L+++L+ C+ +GA +    IH   ++A+  +       L       ++ YA   L  L 
Sbjct: 305 TLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGL-------VDMYAKHGL--LD 355

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
            A  +F  I       +NA++ G +H ++   A+  + +M +     +  T +  LK+ A
Sbjct: 356 DAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTA 415

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            + A+ +T Q+H+   + GFL+D+ +   L+D Y K   +  A +VF++ G  DI ++ +
Sbjct: 416 SLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTS 475

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I  L+Q +   +A+ LF  M  +G+  P+   +   L AC  L A+++G ++H ++ + 
Sbjct: 476 MITALSQCDHGEDAIKLFMEMLRKGL-DPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
           +   +V   NA++  YAKCG ++ A   F  +   K +V+W+ M+   A HG G RAL++
Sbjct: 535 QFMSDVFAGNALVYTYAKCGSIEDADLAFSGLP-EKGVVSWSAMIGGLAQHGHGKRALDV 593

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLG 358
           F +M    + P+ ++  + LCACNHAGLVD+  R FNSM    G++   +HY  ++DLLG
Sbjct: 594 FHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLG 653

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG+L +A ++V S+   T+  +W  LL A +++ D E+  +A+ KL  +     G  VL
Sbjct: 654 RAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVL 713

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           L+N YA+   WDDV +VRK MK+  VKK P  S++E+   +H F   DKSH + R+IY K
Sbjct: 714 LANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAK 773

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           LDE+   + + GY       LHD+ + EKE  L +HSE+LAVAF LIST     I+V KN
Sbjct: 774 LDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPIRVKKN 833

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRICRDCH   K IS + +REII+RD  RFH F+DGACSC+DYW
Sbjct: 834 LRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 172/371 (46%), Gaps = 7/371 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +++ A +  TG +   +F   + +++ Y  S L ++  A  +F ++       +NA + G
Sbjct: 222 RKVHAMVIRTG-YDKDVFTANA-LVDMY--SKLGDIRMAAVVFGKVPETDVVSWNAFISG 277

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
                   +A+    QM       +  T S  LKACA   A     QIH  +++    +D
Sbjct: 278 CVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSD 337

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +   L+D+YAK G +  AKKVFD +  RD+  WNALI+G + G   +EA+ LF RM+ 
Sbjct: 338 NYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRK 397

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           EG F  N  T+   L +   L A  +  ++H    +     +  V N +ID Y KC  L+
Sbjct: 398 EG-FDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLN 456

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A+ VF+       ++ + +M+ A +    G  A++LF +M R G+ PD     + L AC
Sbjct: 457 YAYRVFEK-HGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNAC 515

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
                 + G ++   +       ++    ++V    + G +++A D+  S      +V W
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDA-DLAFSGLPEKGVVSW 574

Query: 383 QTLLGACQLYG 393
             ++G    +G
Sbjct: 575 SAMIGGLAQHG 585



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 126/248 (50%), Gaps = 2/248 (0%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIH 131
           +T  +N ++     + + ++AV  + +M+ G  + +    S  + AC     L    ++H
Sbjct: 166 NTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVH 225

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
           + V+R G+  D      L+D+Y+K+G+I  A  VF ++   D+ SWNA I+G        
Sbjct: 226 AMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQ 285

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
            A++L  +MK  G+  PN  T+   L AC   GA+  G +IH ++ +   D +  +   +
Sbjct: 286 HALELLLQMKSSGLV-PNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGL 344

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           +DMYAK GLLD A +VFD I  ++ LV WN ++   +       AL LF +M + G   +
Sbjct: 345 VDMYAKHGLLDDAKKVFDWIP-QRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVN 403

Query: 312 DVSYLAAL 319
             +  A L
Sbjct: 404 RTTLAAVL 411



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 135/275 (49%), Gaps = 7/275 (2%)

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           A   +L +   IH+H+L+ G  A  +    LL  Y+K     SA++VFDE+      SW+
Sbjct: 15  AATQSLLQGAHIHAHLLKSGLFA--VFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWS 72

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           +L+   +   +  +A+  F+ M+   V + NE  VL  +  C     +  G ++H     
Sbjct: 73  SLVTAYSNNAMPRDALGAFRSMRSCSV-RCNEF-VLPVVLKCAPDAGF--GTQLHALAMA 128

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L  ++ V NA++ MY   G +D+A  VFD   C ++ V+WN ++ A+  +     A++
Sbjct: 129 TGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVK 188

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           +F +M   GV+P++  +   + AC  +  ++ G ++   +   G   ++    ++VD+  
Sbjct: 189 VFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYS 248

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + G ++ A  +   V   TD+V W   +  C L+G
Sbjct: 249 KLGDIRMAAVVFGKVPE-TDVVSWNAFISGCVLHG 282


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/582 (35%), Positives = 342/582 (58%), Gaps = 37/582 (6%)

Query: 33  GQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNA 92
           G F +  F ++S +I  YA      +  A  LF +++      +N ++ G + ++   + 
Sbjct: 145 GFFHADPF-IQSALIAMYAAC--GRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHV 201

Query: 93  VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV 152
           +  Y +M       DA+     L ACA    L     IH  +  +GF   + + T+L+++
Sbjct: 202 LKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNM 261

Query: 153 YA-------------------------------KVGEIVSAKKVFDEMGVRDIASWNALI 181
           YA                               K+G +  A+ +FD M  +D+  W+A+I
Sbjct: 262 YANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMI 321

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           +G A+     EA+ LF  M+   +  P+++T+L  ++AC ++GA  +   IH Y  +   
Sbjct: 322 SGYAESYQPLEALQLFNEMQRRRIV-PDQITMLSVISACANVGALVQAKWIHTYADKNGF 380

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
              + + NA+IDMYAKCG L KA EVF+N+  RK++++W++M+ AFA+HGD   A+ LF 
Sbjct: 381 GRTLPINNALIDMYAKCGNLVKAREVFENMP-RKNVISWSSMINAFAMHGDADSAIALFH 439

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRA 360
           +M    ++P+ V+++  L AC+HAGLV++G + F+SM N   + P  +HYG +VDL  RA
Sbjct: 440 RMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRA 499

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
             L++A ++++++    ++++W +L+ ACQ +G++E+ E A+ +L+E+  ++ G  V+LS
Sbjct: 500 NHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLS 559

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA  +RWDDVG VRK MK++ V K    S IEV   +H F  +D+ H +  EIY+KLD
Sbjct: 560 NIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLD 619

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
            ++ ++K  GY   TS +L D+ EEEK+  + +HSEKLA+ +GLI   + + I++ KNLR
Sbjct: 620 AVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLR 679

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IC DCH  +KL+SKV+  EI++RDR RFH F  G CSC+DYW
Sbjct: 680 ICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 190/410 (46%), Gaps = 34/410 (8%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNAV 79
           H+KQ+ A +  +    S L  ++  +      SP  + L YA +LF  I  P T   N +
Sbjct: 27  HVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPNPPTRFSNQL 86

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           LR  +    P N +  Y  + R     D  +    LKA +++ AL   L+IH    + GF
Sbjct: 87  LRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASKFGF 146

Query: 140 L-ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
             AD  + + L+ +YA  G I+ A+ +FD+M  RD+ +WN +I G +Q       + L++
Sbjct: 147 FHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYE 206

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            MK  G  +P+ + +   L+AC H G    G  IH++I++    +   +  ++++MYA C
Sbjct: 207 EMKTSGT-EPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANC 265

Query: 259 GLLDKAFEVFDNIKCR------------------------------KSLVTWNTMVMAFA 288
           G +  A EV+D +  +                              K LV W+ M+  +A
Sbjct: 266 GAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYA 325

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK 348
                  AL+LF +M R  + PD ++ L+ + AC + G +     +       G    + 
Sbjct: 326 ESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLP 385

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              +++D+  + G L +A ++ +++    +++ W +++ A  ++GD + A
Sbjct: 386 INNALIDMYAKCGNLVKAREVFENMPR-KNVISWSSMINAFAMHGDADSA 434



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 4/231 (1%)

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N L+   ++G      + L+  ++  G F  +  +    L A   L A   G +IH    
Sbjct: 84  NQLLRQFSRGPTPENTLSLYLHLRRNG-FPLDRFSFPPLLKAVSKLSALNLGLEIHGLAS 142

Query: 238 E-ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           +      +  + +A+I MYA CG +  A  +FD +  R  +VTWN M+  ++ +      
Sbjct: 143 KFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHR-DVVTWNIMIDGYSQNAHYDHV 201

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           L+L+E+M  +G +PD +     L AC HAG +  G  +   + + G +       S+V++
Sbjct: 202 LKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNM 261

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
               G +  A ++   +     MV+   +L      G V+ A     ++VE
Sbjct: 262 YANCGAMHLAREVYDQLP-SKHMVVSTAMLSGYAKLGMVQDARFIFDRMVE 311


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/554 (38%), Positives = 324/554 (58%), Gaps = 9/554 (1%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F+S  F + +++IE YA   L  L  A  +F +    +   +NA+L+ LA +     A+ 
Sbjct: 104 FRSDPF-LSTRLIEAYA--ALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALA 160

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALF-----ETLQIHSHVLRHGFLADALLGTTL 149
               M R     D+ + +  LKAC  V A          ++H+H +R G+     + TTL
Sbjct: 161 RLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTL 220

Query: 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK-RMKMEGVFKP 208
           +D YAK+G +  A+ VF  M  R++ SW+A+I   A+    ++A++LFK  M  +    P
Sbjct: 221 IDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVP 280

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           N +T++  L AC  + A   G  +H YI     D  V V NA++ MY +CG L+    +F
Sbjct: 281 NSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIF 340

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
             I  R+ +V+WN+++  + +HG GP A+++FE+M   G  P  +++++ L AC+HAGLV
Sbjct: 341 KWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLV 400

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           ++G  LF SM   GV P  +HY  +VDLLGRAG+L EA ++++S+ +     +W  LLGA
Sbjct: 401 NEGKMLFESMVEYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGA 460

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448
           C+++G VE AEIA   L ++   N G++VLL+++YA  +  + VG +++ ++   ++KV 
Sbjct: 461 CRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKVT 520

Query: 449 GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKE 508
           G S+IEV   +H F + D  +    ++   + E + ++K  GY   T  VL+DI  EEKE
Sbjct: 521 GCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEKE 580

Query: 509 NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
             L  HSEKLAVAFGLI+T     I++ KNLR+C DCH V K ISK   REI+VRD  RF
Sbjct: 581 RILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVNRF 640

Query: 569 HRFKDGACSCKDYW 582
           H F+DG CSC DYW
Sbjct: 641 HHFRDGVCSCGDYW 654


>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
          Length = 1056

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/552 (39%), Positives = 320/552 (57%), Gaps = 24/552 (4%)

Query: 49   FYALSPLNELAYAHALFRQINAPSTND------FNAVLRGLAHSSKPTNAVLWYRQMLRG 102
              A S L  L  AH L  +    ST+       FN+++ G A  S P      +R+M   
Sbjct: 511  LTAYSRLGCLRLAHQLLDETPIESTSHTTLRTAFNSLISGCARHSLPVACFALFRRMRAI 570

Query: 103  SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA 162
            + R DA+T    L A      L    Q+H+   + G   +  +   L+  YA+ G   +A
Sbjct: 571  AVRFDAVT----LLALVPAAPLSVVPQVHALAAQVGLATETSVANCLMSTYARGGAFGAA 626

Query: 163  --KKVFDEMGV--RDIASWNALIAGLAQGNLASEAVDLFKRMK-MEGV-FKPNEVTVLGA 216
              ++VFDEM +  RD+ SWNA+++  AQ  LA +A+DL++RM+  EG   +P+ VT++G 
Sbjct: 627  LARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALDLYRRMRSPEGSGVEPDAVTIVGV 686

Query: 217  LAACGHLGAWKEGDKIHEYI--REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
            L++  HLGA   G     Y+  R      NV +CNA+I+ +A+CG L +A ++FD +   
Sbjct: 687  LSSAAHLGARGVGFDAEHYVVQRLPGFRTNVQLCNALINFHARCGSLPRAQQLFDEMPA- 745

Query: 275  KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
            KS+V+W  ++    +HG+G  A+ LFE+M   G+ PD+V+ +  L AC+HAGL D+G   
Sbjct: 746  KSIVSWTALITGHGMHGNGGVAVSLFERMVSEGIHPDNVAMVGVLSACSHAGLYDEGRMY 805

Query: 335  FNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            F++M +   ++P ++HY  +VDLLGRAGRL+EA +++ S+ M  D  +W  LLGAC+++ 
Sbjct: 806  FSTMESVYKLRPTLEHYTCIVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIHK 865

Query: 394  DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
            +VE+ E A  ++VE+   N G +VL+SN+Y    + D V RVR  M+ R +KK PG SY+
Sbjct: 866  NVEIGEEAFARVVELEPRNVGYYVLMSNIYTDTGQLDCVARVRAVMRKRGLKKEPGCSYV 925

Query: 454  EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA--- 510
            E  G +H F   D SH + R IYE +  +   +KE       S V    G  EKE A   
Sbjct: 926  EHNGRVHLFMADDHSHPQARRIYELVTRLELMVKEKS-GVRESVVAVPKGRMEKEAAQPL 984

Query: 511  LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
            + +HSEKLAVAFGL++T   + I V KNLR+C DCH  +K +S   NR  +VRD  RFHR
Sbjct: 985  VGFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKAVSATTNRSFLVRDASRFHR 1044

Query: 571  FKDGACSCKDYW 582
            F  G CSCKDYW
Sbjct: 1045 FDGGVCSCKDYW 1056



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 161/357 (45%), Gaps = 23/357 (6%)

Query: 69  NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL 128
           +A ST  ++A +R L    +   ++   R     S    AL    ++ +CA +       
Sbjct: 429 DANSTESWSARVRTLTRLGRHKESIALLRHG-GPSPPPHALALPASVISCAALSLPTGVA 487

Query: 129 QIHSHVLRHGFL--ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA------SWNAL 180
           QIH+   + G L  ADA L + LL  Y+++G +  A ++ DE  +   +      ++N+L
Sbjct: 488 QIHALAAKRGLLPAADAYLLSALLTAYSRLGCLRLAHQLLDETPIESTSHTTLRTAFNSL 547

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I+G A+ +L      LF+RM+   V + + VT+L AL     L    +   +H    +  
Sbjct: 548 ISGCARHSLPVACFALFRRMRAIAV-RFDAVTLL-ALVPAAPLSVVPQ---VHALAAQVG 602

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAF--EVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRAL 297
           L     V N ++  YA+ G    A    VFD +    + LV+WN ++ A A +G    AL
Sbjct: 603 LATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDAL 662

Query: 298 ELFEQMGR---AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPNMKHYGS 352
           +L+ +M     +GV+PD V+ +  L +  H G    G    + +     G + N++   +
Sbjct: 663 DLYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDAEHYVVQRLPGFRTNVQLCNA 722

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           +++   R G L  A  +   +     +V W  L+    ++G+  +A     ++V  G
Sbjct: 723 LINFHARCGSLPRAQQLFDEMP-AKSIVSWTALITGHGMHGNGGVAVSLFERMVSEG 778


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/531 (37%), Positives = 309/531 (58%), Gaps = 4/531 (0%)

Query: 53  SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           S   +L  A  +F +++  +   + +++ G         A+  + +M       D    +
Sbjct: 399 SKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVT 458

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
             L ACA    L     +H ++  +    ++ +   L D+YAK G +  A  VF  M  +
Sbjct: 459 SILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKK 518

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D+ SWN +I G  + +L +EA+ LF  M+ E   KP+  TV   L AC  L A  +G +I
Sbjct: 519 DVISWNTMIGGYTKNSLPNEALTLFAEMQRES--KPDGTTVACILPACASLAALDKGREI 576

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H Y        +  V NAV+DMY KCGLL  A  +FD I   K LV+W  M+  + +HG 
Sbjct: 577 HGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIP-NKDLVSWTVMIAGYGMHGY 635

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYG 351
           G  A+  F QM   G++PD+VS+++ L AC+H+GL+D+G ++FN M   C ++PN++HY 
Sbjct: 636 GSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYA 695

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +VDLL R G L +A   +K++ +  D  +W  LL  C+++ DV++AE  + ++ E+   
Sbjct: 696 CMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPE 755

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           N G +VLL+N+YA  E+W++V ++RK +  R +KK PG S+IE+ G I+ F   D S  +
Sbjct: 756 NTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQ 815

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
            ++I   L  +  K+KE GY+  T+  L +  E EKE ALC HSEKLA+AFG+++     
Sbjct: 816 AKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGK 875

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +I+V KNLR+C DCH++ K +SK  +REII+RD  RFH FKDG+CSC+ YW
Sbjct: 876 TIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 169/333 (50%), Gaps = 4/333 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L     +F +++      +N ++   + S     ++  ++QML    + ++ T S  LK
Sbjct: 200 DLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILK 259

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
             A V  + E  Q+H  + + GF +   +  +L+  Y    ++  A+K+FDE+  RD+ S
Sbjct: 260 CFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVIS 319

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY- 235
           WN++I+G  +  L    +++F +M + GV   +  T++    AC ++G    G  +H Y 
Sbjct: 320 WNSMISGYVKNGLDDRGIEIFIKMLVFGV-DIDLATMVNVFVACANIGTLLLGKVLHSYS 378

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           I+   LD  V   N ++DMY+KCG L+ A  VF+ +   K++V+W +M+  +   G    
Sbjct: 379 IKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD-EKTVVSWTSMITGYVREGLSDG 437

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           A++LF++M   GV PD  +  + L AC   G +  G  + + +    ++ N     ++ D
Sbjct: 438 AIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTD 497

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +  + G +++A D+   +    D++ W T++G 
Sbjct: 498 MYAKCGSMKDAHDVFSHMK-KKDVISWNTMIGG 529



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 171/370 (46%), Gaps = 14/370 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLN--ELAYAHALFRQINAPSTNDFNAVL 80
           +++  ++T  G+   +L     K+ E+   S L+   LAYA AL  +       D +  +
Sbjct: 65  EKIACYVTVRGEKAMQLLESGLKVKEYELFSKLSFSSLAYAPALETKSYMDVELDSSRKI 124

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSD---ALTCSFALKACARVLALFETLQIHSHVLRH 137
                     NA+    ++L  S  S+      CS  L+ CA   ++ +  ++ S +   
Sbjct: 125 VEFCEVGDLKNAM----ELLCSSQNSNFDLGAYCSI-LQLCAERKSIRDGRRVRSIIESS 179

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           G + D +LG  L+ +Y K G++   + VFD++    I  WN +I+  +      E+++LF
Sbjct: 180 GVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLF 239

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
           K+M   G+ KPN  T    L     +   +EG ++H  I +   +    V N++I  Y  
Sbjct: 240 KQMLELGI-KPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFV 298

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
              +  A ++FD +  R  +++WN+M+  +  +G   R +E+F +M   GV  D  + + 
Sbjct: 299 GRKVRCAQKLFDELTDR-DVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVN 357

Query: 318 ALCACNHAGLVDDGVRLFN-SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
              AC + G +  G  L + S+    +   ++   +++D+  + G L  A  + + +   
Sbjct: 358 VFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEK 417

Query: 377 TDMVLWQTLL 386
           T +V W +++
Sbjct: 418 T-VVSWTSMI 426


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/583 (35%), Positives = 343/583 (58%), Gaps = 18/583 (3%)

Query: 5   NALLQKCSS-----NGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA 59
           N LL++C+       G + H H+            F+  L  +++ ++  YA      L 
Sbjct: 78  NTLLKRCTQLGKLKEGKLVHFHV--------LNSNFKHDLV-IQNSLLFMYARC--GSLE 126

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
            A  LF ++       + +++ G A + + ++A+L + +ML      +  T S  +K C 
Sbjct: 127 GARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCG 186

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            + +     QIH+   ++G  ++  +G++L+D+YA+ G +  A  VFD++G ++  SWNA
Sbjct: 187 YMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNA 246

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           LIAG A+     EA+ LF RM+ EG ++P E T    L++C  +G  ++G  +H ++ + 
Sbjct: 247 LIAGYARKGEGEEALALFVRMQREG-YRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKS 305

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
              +   V N ++ MYAK G +  A +VFD +  +  +V+ N+M++ +A HG G  A + 
Sbjct: 306 SQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKL-VKVDVVSCNSMLIGYAQHGLGKEAAQQ 364

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           F++M R G++P+D+++L+ L AC+HA L+D+G   F  M    ++P + HY ++VDLLGR
Sbjct: 365 FDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGR 424

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L +A   ++ + +   + +W  LLGA +++ + EM   A++++ E+  +  G   LL
Sbjct: 425 AGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLL 484

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           +N+YA+  RW+DV +VRK MK+  VKK P  S++EV   +H F  +D +H +  +I++  
Sbjct: 485 ANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMW 544

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +++  KIKE GY   TS VL  + ++EKE  L YHSEKLA++F L++T   ++I++ KN+
Sbjct: 545 EKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNI 604

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH  IK +S V  REIIVRD  RFH F DG CSC DYW
Sbjct: 605 RVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 154/282 (54%), Gaps = 20/282 (7%)

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-------GSHRSDALTC-------- 111
           QI +P   D  +  R L   S+ T  V+  R +LR       G H  D + C        
Sbjct: 17  QIVSPCKRDLGS-FRRLWQHSESTFCVIDDRNLLRPSLNSKTGLHVLDLIDCGSLEPDRT 75

Query: 112 --SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
             +  LK C ++  L E   +H HVL   F  D ++  +LL +YA+ G +  A+++FDEM
Sbjct: 76  LYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEM 135

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
             RD+ SW ++I G AQ + AS+A+ LF RM  +G  +PNE T+   +  CG++ ++  G
Sbjct: 136 PHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGA-EPNEFTLSSLVKCCGYMASYNCG 194

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
            +IH    +     NV V ++++DMYA+CG L +A  VFD + C K+ V+WN ++  +A 
Sbjct: 195 RQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGC-KNEVSWNALIAGYAR 253

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
            G+G  AL LF +M R G +P + +Y A L +C+  G ++ G
Sbjct: 254 KGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQG 295


>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 324/571 (56%), Gaps = 26/571 (4%)

Query: 20  IHIKQLQAHLTTTGQFQSK--LFPVRSKIIEFYALS--PLNELAYAHALFRQINAPSTND 75
           I + +L A L  TGQ Q+   L P       F   S  P      A  L R    P    
Sbjct: 2   IRVYKLHATLIKTGQHQNPHSLRPF------FLTCSNYPAAARYAATVLLRLPTPPDPFS 55

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N +++ ++    PT A+  +  M R S   D  T    LK     L      ++     
Sbjct: 56  YNTIIKHVS----PTGAISLFSHMHRNSVPFDHFTFPLILKHHHHHLLHSLIFKL----- 106

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             GF  +  +   L++ Y   G +  A K+FDEM  RDI SW+ LI+ L + NL +EA+ 
Sbjct: 107 --GFDTNIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALS 164

Query: 196 LFKRMKMEGVFKPN---EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           +F++M+M      N      +L  ++A   LG  + G  +H +I    + M V +  A+I
Sbjct: 165 VFQQMQMGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTALI 224

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
           +MY++CGL+D++ +VFD +  R ++VTW  ++   AVHG    AL++F +M  +G+KPD 
Sbjct: 225 NMYSRCGLIDRSVKVFDEMPER-NVVTWTALINGLAVHGRSREALKVFYEMKESGLKPDG 283

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
             ++  L AC+H GLV+DG R+F SM +  G+KP ++HYG +VDLLGRAG + EA D V+
Sbjct: 284 ALFIGVLVACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFVE 343

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDD 431
            + +  + V+W+TLLGAC  +  + +AE A  +++E+   + GD+VLLSN Y     W  
Sbjct: 344 EMPLKPNSVIWRTLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLLSNAYGRVGNWGG 403

Query: 432 VGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGY 491
              +R +MK   + K PG S++ +  V+H+F + D  H +W EI + L  I+  +K  GY
Sbjct: 404 KAGLRNSMKQNRIVKEPGLSFVHIDQVVHEFVSGDHVHPQWEEITKFLASIIDTVKLGGY 463

Query: 492 AAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKL 551
              TS VLHDI +EEKE+ L YHSEKLAVAF L+   +  +I+V KNLRIC DCHD +K 
Sbjct: 464 TPNTSSVLHDIQDEEKEHCLGYHSEKLAVAFVLLYHRDRRTIRVIKNLRICYDCHDFMKH 523

Query: 552 ISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            S +++R+II+RDR RFH F  G CSC+D+W
Sbjct: 524 ASGIFDRDIIIRDRNRFHHFSKGLCSCQDFW 554


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/578 (39%), Positives = 341/578 (58%), Gaps = 12/578 (2%)

Query: 2   ANLNALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFP---VRSKIIEFYALSPL 55
           + L ALL   +  GA++    +H   ++A L      +SKL     + + +++ YA    
Sbjct: 114 STLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYA--KC 171

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFA 114
             L YA  +F  + A +   ++A++ G    S+ T A L ++ ML +G       + + A
Sbjct: 172 GSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASA 231

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ACA +  L    Q+H+ + + G  AD   G +LL +YAK G I  A  +FDEM V+D 
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 291

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            S++AL++G  Q   A EA  +FK+M+   V +P+  T++  + AC HL A + G   H 
Sbjct: 292 VSYSALVSGYVQNGRAEEAFLVFKKMQACNV-EPDAATMVSLIPACSHLAALQHGRCSHG 350

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            +    L     +CNA+IDMYAKCG +D + +VF N+   + +V+WNTM+  + +HG G 
Sbjct: 351 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVF-NMMPSRDIVSWNTMIAGYGIHGLGK 409

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSV 353
            A  LF +M   G  PD V+++  L AC+H+GLV +G   F+ M +  G+ P M+HY  +
Sbjct: 410 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 469

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VDLL R G L EA + ++S+ +  D+ +W  LLGAC++Y ++++ +  SR + E+G    
Sbjct: 470 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 529

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
           G+FVLLSN+Y+A  R+D+   VR   K +  KK PG S+IE+ G +H F   D+SH +  
Sbjct: 530 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSP 589

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           EIY +LD I+  IK+ GY   TS VL D+ EEEKE AL  HSEKLA+A+G++S SE  +I
Sbjct: 590 EIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTI 649

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
            V KNLR+C DCH VIK IS V  R IIVRD  RFH F
Sbjct: 650 FVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 192/392 (48%), Gaps = 22/392 (5%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAV- 93
            Q+ LF V + +++ Y       L  A  +F  + A     +NA+L G AH     +AV 
Sbjct: 41  LQADLF-VSTALLDMYVKCAC--LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVA 97

Query: 94  -LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF---------LADA 143
            L   QM     R +A T    L   A+  AL +   +H++ +R            L D 
Sbjct: 98  HLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDG 157

Query: 144 -LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
            LLGT LLD+YAK G ++ A++VFD M  R+  +W+ALI G    +  ++A  LFK M  
Sbjct: 158 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 217

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           +G+   +  ++  AL AC  L   + G+++H  + +  +  ++   N+++ MYAK GL+D
Sbjct: 218 QGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLID 277

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
           +A  +FD +  + + V+++ +V  +  +G    A  +F++M    V+PD  + ++ + AC
Sbjct: 278 QAIALFDEMAVKDT-VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           +H   +  G     S+   G+        +++D+  + GR+  +  +   +    D+V W
Sbjct: 337 SHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSW 395

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
            T++     YG   + + A+   +EM  NN G
Sbjct: 396 NTMIAG---YGIHGLGKEATALFLEM--NNLG 422



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 151/321 (47%), Gaps = 18/321 (5%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           MLR     +  T  FALKAC+ +        IH H +  G  AD  + T LLD+Y K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME-GVFKPNEVTVLGAL 217
           +  A  +F  M  RD+ +WNA++AG A   +   AV     M+M+    +PN  T++  L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 218 AACGHLGAWKEGDKIHEY-IR---------EERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
                 GA  +G  +H Y IR         + +L   V++  A++DMYAKCG L  A  V
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM---GRAGVKPDDVSYLAALCACNH 324
           FD +  R   VTW+ ++  F +     +A  LF+ M   G   + P  ++  +AL AC  
Sbjct: 181 FDAMPARNE-VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACAS 237

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
              +  G +L   +A  GV  ++    S++ +  +AG + +A  +   +++  D V +  
Sbjct: 238 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAV-KDTVSYSA 296

Query: 385 LLGACQLYGDVEMAEIASRKL 405
           L+      G  E A +  +K+
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKM 317


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/442 (43%), Positives = 282/442 (63%), Gaps = 3/442 (0%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +  TT++    ++G +  A++VFD M  R++ SWN++I+G  + +   +A+++F  M+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
             GV + N      AL AC   GA   G +I+ ++ +  ++++  +  AV+DMY KCG +
Sbjct: 223 ALGV-EGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCV 281

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           D+A+ VFD++  R  L TWN M+  FAVHG    ALELF QM  AGV PDDV+ L  L A
Sbjct: 282 DEAWRVFDSLPAR-GLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTA 340

Query: 322 CNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C HAG V +G R  N + +  G++P  +HYG +VDL GRAG+L EA  ++  + M  D+ 
Sbjct: 341 CAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLA 400

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +   LLGAC+++GDV++ E    +++++  +N G +VLL+NL A   RWD+VG+VR+ M 
Sbjct: 401 VLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMD 460

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
            R+V K  G S IEV G   +F   +  H + REIY    +++ +I+  GY   T   LH
Sbjct: 461 ERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALH 520

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           D+ EE+KE AL  HSEKLA+AFGL+      ++++ KNLR+CRDCH+  K +S+V+ REI
Sbjct: 521 DVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREI 580

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           +VRDR RFH FKDG CSCKDYW
Sbjct: 581 VVRDRSRFHHFKDGMCSCKDYW 602


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/523 (37%), Positives = 309/523 (59%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           +  LF  +    +  +  ++ GL  +     A+  +R+M       D  T    L AC  
Sbjct: 223 SQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGS 282

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +LAL E  QIH++V+R     +  +G+ L+D+Y+K   I SA+ VF  M  +++ SW A+
Sbjct: 283 LLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAM 342

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           + G  Q   + EAV +F  M+  GV +P++ T+   +++C +L + +EG + H       
Sbjct: 343 LVGYGQNGFSEEAVKIFFEMQRNGV-EPDDFTLGSVISSCANLASLEEGAQFHCRALVSG 401

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L   + V NA+I +Y KCG  + +  +F  +  R   V+W  ++  +A  G     + LF
Sbjct: 402 LISFITVSNALITLYGKCGSTENSHRLFTEMNIRDE-VSWTALLAGYAQFGKANETIGLF 460

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGR 359
           E+M   G+KPD V+++  L AC+ AGLV+ G++ F SM    G+ P + H   ++DLLGR
Sbjct: 461 ERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGR 520

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGRL+EA + + ++    D+V W TLL +C+++GD+E+ + A+  L+ +   N   +VLL
Sbjct: 521 AGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLL 580

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           S+LYA+  +WD V ++R+ M+++ V+K PG+S+I+  G +H F   D+S     +IY +L
Sbjct: 581 SSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAEL 640

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +++ +K+ E GY    S VLHD+ E EK   L +HSEKLA+AFGLI       I+V KNL
Sbjct: 641 EKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNL 700

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH+  K ISK+  REI+VRD VRFH FKDG CSC D+W
Sbjct: 701 RVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 195/422 (46%), Gaps = 71/422 (16%)

Query: 36  QSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR-------------- 81
           Q + F   + I  +Y L     LAYAH +F  I  P+   +N +L               
Sbjct: 37  QPETFLSNNLITAYYKL---GNLAYAHHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQI 93

Query: 82  -----------------GLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFALKACARVLA 123
                            G A+    ++AV  Y+ ML+ +  + + +T S  L  C++   
Sbjct: 94  FNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRC 153

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA-------- 175
           +    QI+  +L+ GF +D  +G+ L+D+Y K+G I  AK+ FDEM  R++         
Sbjct: 154 VDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITG 213

Query: 176 -----------------------SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
                                  SW  +I GL Q  L  EA+D+F+ M++ G F  ++ T
Sbjct: 214 LMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAG-FAMDQFT 272

Query: 213 VLGALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
               L ACG L A  EG +IH Y IR +  D NV V +A++DMY+KC  +  A  VF  +
Sbjct: 273 FGSVLTACGSLLALGEGKQIHAYVIRTDHKD-NVFVGSALVDMYSKCRSIKSAETVFKRM 331

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
             +K++++W  M++ +  +G    A+++F +M R GV+PDD +  + + +C +   +++G
Sbjct: 332 P-QKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEG 390

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
            +        G+   +    +++ L G+ G  + +  +   +++  D V W  LL     
Sbjct: 391 AQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNI-RDEVSWTALLAGYAQ 449

Query: 392 YG 393
           +G
Sbjct: 450 FG 451



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 139/271 (51%), Gaps = 6/271 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ A++  T   +  +F V S +++ Y  S    +  A  +F+++   +   + A+L G
Sbjct: 290 KQIHAYVIRTDH-KDNVF-VGSALVDMY--SKCRSIKSAETVFKRMPQKNVISWTAMLVG 345

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              +     AV  + +M R     D  T    + +CA + +L E  Q H   L  G ++ 
Sbjct: 346 YGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISF 405

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +   L+ +Y K G   ++ ++F EM +RD  SW AL+AG AQ   A+E + LF+RM  
Sbjct: 406 ITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLA 465

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV-CNAVIDMYAKCGLL 261
            G+ KP+ VT +G L+AC   G  ++G +  E + +E   M +V  C  +ID+  + G L
Sbjct: 466 HGL-KPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRL 524

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           ++A    +N+ C   +V W T++ +  VHGD
Sbjct: 525 EEARNFINNMPCHPDVVGWATLLSSCRVHGD 555



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 135/321 (42%), Gaps = 38/321 (11%)

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
           HV  H    +     T+L VY+K+G +   +++F+ M  RD  SWN  I+G A     S+
Sbjct: 61  HVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSD 120

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           AV ++K M  +     N +T    L  C        G +I+  I +     +V V + ++
Sbjct: 121 AVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLV 180

Query: 253 DMYAK-------------------------------CGLLDKAFEVFDNIKCRKSLVTWN 281
           DMY K                               CG+++++  +F  +K R S ++W 
Sbjct: 181 DMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDS-ISWT 239

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            M+     +G    AL++F +M  AG   D  ++ + L AC     + +G ++   +   
Sbjct: 240 IMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRT 299

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIA 401
             K N+    ++VD+  +   ++ A  + K +    +++ W  +L     YG    +E A
Sbjct: 300 DHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQ-KNVISWTAMLVG---YGQNGFSEEA 355

Query: 402 SRKLVEMGSNNC--GDFVLLS 420
            +   EM  N     DF L S
Sbjct: 356 VKIFFEMQRNGVEPDDFTLGS 376


>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
          Length = 838

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/471 (40%), Positives = 297/471 (63%), Gaps = 14/471 (2%)

Query: 124 LFETLQIHS--HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
           L E+L  H    +L +    D +LG  LLDV+A+ G I S +KVFD +   D+ +WNAL+
Sbjct: 370 LQESLVPHEVCQILNNETSCDRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALL 429

Query: 182 AGLAQ---------GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           +  A+          + A   +++F RM +    KPNE+T++  + ACG LGA   G   
Sbjct: 430 SAYARLRARDVACASSAADAILEMFVRM-LSLAIKPNEITLVAVIGACGELGAVSHGVWA 488

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H Y  + RL +N +V  A+++MYA CG LD A +VF     R +   +N M+   AVHG 
Sbjct: 489 HTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTR-CYNAMLHGLAVHGH 547

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYG 351
           G  AL LF++M   GV  D V+ L+ +CAC HAGLVD+G+  F+ M    G++P+++HYG
Sbjct: 548 GRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYG 607

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +VD+L RAGRL +A  ++  + +  +  ++++L+ AC ++G +E+ +    +L+ +  +
Sbjct: 608 CMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPD 667

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           + G+ VL+SN YA   RWDD  + RK MK+  + K PG S++++ GV+H+F   DK+H  
Sbjct: 668 DSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPA 727

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
            +EIY  +++I  ++ E G+ + TS  L D+ EE+K +AL YHSE+LA+AF LI+++   
Sbjct: 728 SKEIYAMVEDIETRLSECGHRSSTSSALFDVEEEDKADALSYHSERLAIAFALIASNPGA 787

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            I++ KNLR+C DCH+  KL+S+VY REI++RDR RFH F+DG CSC D+W
Sbjct: 788 PIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 838



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 128/265 (48%), Gaps = 13/265 (4%)

Query: 58  LAYAHALFRQINAPSTNDFNAVL--------RGLAHSSKPTNAVL-WYRQMLRGSHRSDA 108
           +A    +F +I  P    +NA+L        R +A +S   +A+L  + +ML  + + + 
Sbjct: 407 IASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIKPNE 466

Query: 109 LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE 168
           +T    + AC  + A+   +  H++ ++     + ++ T L+++YA  G +  A++VF  
Sbjct: 467 ITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAA 526

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
              RD   +NA++ GLA       A+ LF RM  EGV   + VTVL  + AC H G   E
Sbjct: 527 ASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGV-PVDGVTVLSVMCACAHAGLVDE 585

Query: 229 G-DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
           G D       E  ++ ++     ++DM ++ G L+ A ++   +    +   + +++ A 
Sbjct: 586 GLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRAC 645

Query: 288 AVHGDGPRALELFEQMGRAGVKPDD 312
            +HG      ++  ++ R  ++PDD
Sbjct: 646 GIHGKLELGKKMIAELMR--LEPDD 668


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/514 (38%), Positives = 305/514 (59%), Gaps = 38/514 (7%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           + +++T S  L AC+ +  L     IH   +RHG + +  + + L+ +YA+   +  A+ 
Sbjct: 230 KPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARL 289

Query: 165 VFDEMGVRDI-----------------------------------ASWNALIAGLAQGNL 189
           VFD M  RD+                                   A+WNA+I G  +   
Sbjct: 290 VFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQ 349

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             +AV++ ++M+  G FKPN++T+   L AC  L + + G ++H Y+    L  ++    
Sbjct: 350 TEKAVEMLRKMQNLG-FKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMT 408

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           A++ MYAKCG L+ +  VFD I CRK +V WNTM++A A+HG+G   L LFE M ++G+K
Sbjct: 409 ALVYMYAKCGDLNLSRNVFDMI-CRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIK 467

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           P+ V++   L  C+H+ LV++G+++FNSM  +  V+P+  HY  +VD+  RAGRL EA +
Sbjct: 468 PNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYE 527

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428
            ++ + M      W  LLGAC++Y +VE+A+I++ KL E+  NN G++V L N+    + 
Sbjct: 528 FIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKL 587

Query: 429 WDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKE 488
           W +    R  MK R + K PG S+++VG  +H F   DK++++  +IY  LDE+  K+K 
Sbjct: 588 WSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKS 647

Query: 489 YGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDV 548
            GY   T  VL DI +EEK  +LC HSEKLAVAFG+++ +  +SI+VFKNLRIC DCH+ 
Sbjct: 648 AGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNA 707

Query: 549 IKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IK +SKV    IIVRD +RFH F++G CSC+D W
Sbjct: 708 IKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 169/376 (44%), Gaps = 26/376 (6%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM-LRG--SHRSDALTCSFALKA 117
           A  LF  I  P     + ++        P  A+  Y  +  RG   H S  LT +   KA
Sbjct: 85  AQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA---KA 141

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C          ++H   +R G ++DA LG  L+  Y K   +  A++VFD++ V+D+ SW
Sbjct: 142 CGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSW 201

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            ++ +      L    + +F  M   GV KPN VT+   L AC  L   K G  IH +  
Sbjct: 202 TSMSSCYVNCGLPRLGLAVFCEMGWNGV-KPNSVTLSSILPACSELKDLKSGRAIHGFAV 260

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
              +  NV VC+A++ +YA+C  + +A  VFD +   + +V+WN ++ A+  + +  + L
Sbjct: 261 RHGMIENVFVCSALVSLYARCLSVKQARLVFD-LMPHRDVVSWNGVLTAYFTNREYDKGL 319

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
            LF QM   GV+ D+ ++ A +  C   G  +  V +   M N G KPN     S +   
Sbjct: 320 ALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFL--- 376

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
                   AC I++S+ MG ++         C ++    + ++ +   +      CGD  
Sbjct: 377 -------PACSILESLRMGKEV--------HCYVFRHWLIGDLTTMTALVYMYAKCGDLN 421

Query: 418 LLSNLYAAYERWDDVG 433
           L  N++    R D V 
Sbjct: 422 LSRNVFDMICRKDVVA 437



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 10/235 (4%)

Query: 63  ALFRQINAPSTN----DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
           ALF Q+++         +NAV+ G   + +   AV   R+M     + + +T S  L AC
Sbjct: 320 ALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPAC 379

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           + + +L    ++H +V RH  + D    T L+ +YAK G++  ++ VFD +  +D+ +WN
Sbjct: 380 SILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWN 439

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
            +I   A      E + LF+ M   G+ KPN VT  G L+ C H    +EG +I   +  
Sbjct: 440 TMIIANAMHGNGREVLLLFESMLQSGI-KPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGR 498

Query: 239 ERL---DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           + L   D N   C  ++D++++ G L +A+E    +    +   W  ++ A  V+
Sbjct: 499 DHLVEPDANHYAC--MVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVY 551



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 3/244 (1%)

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           LG  LL     VG+   A+++FD +   D  + + LI+      L +EA+ L+  ++  G
Sbjct: 68  LGLRLLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARG 127

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
           + KP+    L    ACG  G      ++H+      +  +  + NA+I  Y KC  ++ A
Sbjct: 128 I-KPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGA 186

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
             VFD++   K +V+W +M   +   G     L +F +MG  GVKP+ V+  + L AC+ 
Sbjct: 187 RRVFDDLVV-KDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSE 245

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
              +  G  +       G+  N+    ++V L  R   +++A  +V  +    D+V W  
Sbjct: 246 LKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQA-RLVFDLMPHRDVVSWNG 304

Query: 385 LLGA 388
           +L A
Sbjct: 305 VLTA 308


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/581 (37%), Positives = 334/581 (57%), Gaps = 15/581 (2%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQ 67
           L++C S  A++    K++  H+   G F+S  + + + ++E Y       L  A ++F  
Sbjct: 64  LRRCGSEAAIAEG--KRIHYHIVLCG-FKSSRY-LCNLLVEMYG--KCGSLQAAKSVFHI 117

Query: 68  INAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET 127
               +   +  ++   AH+    +A+     M       +++T    L A A +  L   
Sbjct: 118 TPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRG 177

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
             +H  +   GFLAD  +   L+++YAK   +  A  VF+ +  R + +W AL+A  A  
Sbjct: 178 RALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALN 237

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
               +A+ +F  M ++GV +P EVT +  +  C  +  +  G ++H  I + R + NV V
Sbjct: 238 GFFRDALKVFLLMTLDGV-EPTEVTFVTVVDVCADIAVFGIGREVHGVI-DARSEANVCV 295

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA- 306
            NA+I+MY KC   D+A +VFD ++ RK ++TWN+M+  +  +G G +ALE++++M  + 
Sbjct: 296 GNALINMYGKCASPDEARKVFDAMQ-RKDIITWNSMIAVYGQNGYGFQALEIYKRMQESR 354

Query: 307 ----GVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAG 361
               G+  DD++++  L AC+HAGLV D  +L++SM  + G KP     G ++DLLGRAG
Sbjct: 355 MTILGITHDDITFIGVLFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAG 414

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L EA + + S+    D  +W  LLGAC  + DVE A  A+ +++ +   + G +V LSN
Sbjct: 415 WLDEAEEFINSMPYHPDHTIWTILLGACITHADVERAARAADRIMALRPTDSGSYVALSN 474

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           LYA  ERWDD+ R+RK M  R V K+ G S IE+GGV+H+F   D SH + REIYE+L  
Sbjct: 475 LYALAERWDDMARMRKLMDQRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKREIYEELRR 534

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           I   I+E GY      VLH+   E KE   C+HSE+LA+AFG+IS+   T +++ KNLR+
Sbjct: 535 IEGVIRERGYVPDIKAVLHNAAREAKEKMCCFHSERLAIAFGMISSPGGTELRIMKNLRV 594

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH   K+ISK   R+IIVRD  RFH F++G+CSC+DYW
Sbjct: 595 CPDCHSATKIISKFSGRKIIVRDANRFHEFRNGSCSCEDYW 635



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 2/186 (1%)

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           P+   +   L  CG   A  EG +IH +I       +  +CN +++MY KCG L  A  V
Sbjct: 55  PSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSV 114

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           F +I  R+++ +W  MV AFA +G    AL L E M   G+ P+ ++++  L A      
Sbjct: 115 F-HITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSW 173

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           +D G  L   +A CG   ++     ++++  +   L +AC + +S++    ++ W  L+ 
Sbjct: 174 LDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLT-SRSVIAWTALVA 232

Query: 388 ACQLYG 393
           A  L G
Sbjct: 233 AYALNG 238


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/538 (36%), Positives = 314/538 (58%), Gaps = 6/538 (1%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +++ Y+ S    L  A  +F  +   S   + +++ G A       +V  + +M +    
Sbjct: 292 LLDMYSKS--GNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGIS 349

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            D  T +  L ACA    L     +H+++  +   +D  +   L+D+YAK G +  A  V
Sbjct: 350 PDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSV 409

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           F EM V+DI SWN +I G ++ +L +EA++LF  M+     KPN +T+   L AC  L A
Sbjct: 410 FSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS--KPNSITMACILPACASLAA 467

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            + G +IH +I      ++  V NA++DMY KCG L  A  +FD I   K LV+W  M+ 
Sbjct: 468 LERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIP-EKDLVSWTVMIA 526

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVK 344
            + +HG G  A+  F +M  +G++PD+VS+++ L AC+H+GL+D+G   FN M N C ++
Sbjct: 527 GYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIE 586

Query: 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRK 404
           P  +HY  +VDLL RAG L +A   +K + +  D  +W  LL  C++Y DV++AE  +  
Sbjct: 587 PKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEH 646

Query: 405 LVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFT 464
           + E+   N G +VLL+N+YA  E+W++V ++R+ +  R ++K PG S+IE+ G +H F T
Sbjct: 647 VFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVT 706

Query: 465 SDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGL 524
            D SH    +I   L +   ++KE G+       L    + EKE ALC HSEK+A+AFG+
Sbjct: 707 GDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGI 766

Query: 525 ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +S     +++V KNLR+C DCH++ K +SK+  R+II+RD  RFH FKDG+CSC+ +W
Sbjct: 767 LSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 163/333 (48%), Gaps = 4/333 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF ++       +N+++ G   +      +  + QML     +D  T    +  C+ 
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSN 263

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              L     +H + ++  F  +  L   LLD+Y+K G + SA +VF+ MG R + SW ++
Sbjct: 264 TGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSM 323

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IAG A+  L+  +V LF  M+ EG+  P+  T+   L AC   G  + G  +H YI+E +
Sbjct: 324 IAGYAREGLSDMSVRLFHEMEKEGI-SPDIFTITTILHACACTGLLENGKDVHNYIKENK 382

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           +  ++ V NA++DMYAKCG +  A  VF  ++  K +V+WNTM+  ++ +     AL LF
Sbjct: 383 MQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQV-KDIVSWNTMIGGYSKNSLPNEALNLF 441

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M +   KP+ ++    L AC     ++ G  +   +   G   +     ++VD+  + 
Sbjct: 442 VEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKC 500

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           G L  A  +   +    D+V W  ++    ++G
Sbjct: 501 GALGLARLLFDMIP-EKDLVSWTVMIAGYGMHG 532



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 152/300 (50%), Gaps = 24/300 (8%)

Query: 144 LLGTTLLDVYAKVG------------------EIVSAKKVFDEMGVRDIASWNALIAGLA 185
            L   L++ YAK+G                   + SA+K+FDE+G RD+ SWN++I+G  
Sbjct: 168 FLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYV 227

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
              L+ + +DLF++M + G+   +  T++  +A C + G    G  +H Y  +      +
Sbjct: 228 SNGLSEKGLDLFEQMLLLGI-NTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKEL 286

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            + N ++DMY+K G L+ A +VF+ +   +S+V+W +M+  +A  G    ++ LF +M +
Sbjct: 287 TLNNCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK 345

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            G+ PD  +    L AC   GL+++G  + N +    ++ ++    +++D+  + G + +
Sbjct: 346 EGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGD 405

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A  +   + +  D+V W T++G    Y    +   A    VEM  N+  + + ++ +  A
Sbjct: 406 AHSVFSEMQV-KDIVSWNTMIGG---YSKNSLPNEALNLFVEMQYNSKPNSITMACILPA 461



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 23/171 (13%)

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T    L  C  L + ++G +IH  I+   ++++ V+ + ++ MY  CG L +   +FD +
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK--------------PDDVSYLA 317
              K  + WN ++  +A  G+   +L LF++M   G++               D +S+ +
Sbjct: 163 ANEKVFL-WNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNS 221

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD--------LLGRA 360
            +      GL + G+ LF  M   G+  ++    SVV         LLGRA
Sbjct: 222 MISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRA 272


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/532 (37%), Positives = 317/532 (59%), Gaps = 39/532 (7%)

Query: 76  FNAVLRGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHV 134
           +NA++ G   +     A+ L+   +       +++T S  L AC R  +  +   IHS V
Sbjct: 357 WNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCV 416

Query: 135 LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194
           ++ GF  D  +   L+D+Y+++G I  A+ +F  M  +DI SWN +I G        +A+
Sbjct: 417 VKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDAL 476

Query: 195 DLFKRMKMEGV-----------------FKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           +L   M+                      KPN VT++  L  C  L A  +G +IH Y  
Sbjct: 477 NLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAV 536

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           ++ L  +V V +A++DMYAKCG L+ +  VF+ +  R +++TWN ++MA+ +HG G  AL
Sbjct: 537 KQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVR-NVITWNVLIMAYGMHGKGEEAL 595

Query: 298 ELFEQMGRAG-----VKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYG 351
           +LF +M   G     ++P++V+Y+A   + +H+G+VD+G+ LF +M A  G++P   HY 
Sbjct: 596 KLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYA 655

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
            +VDLLGR+G+++EA +++K++      V  W +LLGAC+++ ++E+ EIA++ L     
Sbjct: 656 CLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNL----- 710

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
                FVL  N+     +   +GR    MK + V+K PG S+IE G  +HKF   D SH 
Sbjct: 711 -----FVLDPNVLDYGTKQSMLGR---KMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHP 762

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           + +E++E L+ +  ++K+ GY   TSCVLH++GEEEKE  LC HSE+LA+AFGL++TS  
Sbjct: 763 QSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPG 822

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           T+I+V KNLR+C DCH   K ISK+ +REII+RD  RFH F++G CSC DYW
Sbjct: 823 TTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 191/409 (46%), Gaps = 26/409 (6%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ A +   G +++      + ++  YA   L  +  A  LF   +      +N ++  
Sbjct: 207 KQVHAFVLRNGDWRTF---TNNALVTMYA--KLGRVYEAKTLFDVFDDKDLVSWNTIISS 261

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL-RHGFLA 141
           L+ + +   A+L+   ML+   R + +T +  L AC+ +  L    +IH+ VL  +  + 
Sbjct: 262 LSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIE 321

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           ++ +G  L+D+Y    +    + VFD M  R IA WNA+IAG  +     EA++LF  M 
Sbjct: 322 NSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMV 381

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            E    PN VT+   L AC    ++ + + IH  + +   + +  V NA++DMY++ G +
Sbjct: 382 FELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRI 441

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA--------------- 306
           + A  +F ++  RK +V+WNTM+  + V G    AL L   M R                
Sbjct: 442 EIARSIFGSMN-RKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDN 500

Query: 307 ---GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
               +KP+ V+ +  L  C     +  G  +        +  ++    ++VD+  + G L
Sbjct: 501 KNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCL 560

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
             +  + + +S+  +++ W  L+ A  ++G  E A    R++VE G NN
Sbjct: 561 NLSRTVFEQMSV-RNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNN 608



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 86  SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           SS    A+  Y  M+      D       LKA A +  L    Q+H+HV + G      +
Sbjct: 63  SSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAV 122

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
             +L+++Y K G+I +A++VFDE+  RD  SWN++I    +      AV LF+ M +E V
Sbjct: 123 PNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENV 182

Query: 206 FKPNEVTVLGALAACGHL-GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
             P   T++    AC +L      G ++H ++     D      NA++ MYAK G + +A
Sbjct: 183 -GPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEA 240

Query: 265 ---FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
              F+VFD+    K LV+WNT++ + + +     AL     M ++GV+P+ V+  + L A
Sbjct: 241 KTLFDVFDD----KDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPA 296

Query: 322 CNHAGLVDDG 331
           C+H  ++  G
Sbjct: 297 CSHLEMLGCG 306


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/523 (38%), Positives = 310/523 (59%), Gaps = 38/523 (7%)

Query: 96  YRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK 155
           +R+M     R +++T S  L AC  +  L    ++H  V+R+G   +  + + L+++YA 
Sbjct: 167 FRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYAS 226

Query: 156 VGEIVSAKKVFDEMGVRDI-----------------------------------ASWNAL 180
              I  A+ VFD M  RD                                    ASWNA+
Sbjct: 227 CLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAV 286

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G  Q     +A+++  RM+  G FKPN++T+   L AC +L + + G +IH YI    
Sbjct: 287 IGGCMQNGRTEKALEVLSRMQNSG-FKPNQITITSVLPACTNLESLRGGKQIHGYIFRHW 345

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              ++    A++ MYAKCG L+ +  VF ++  ++  V+WNTM++A ++HG+G  AL LF
Sbjct: 346 FFQDLTTTTALVFMYAKCGDLELSRRVF-SMMTKRDTVSWNTMIIATSMHGNGEEALLLF 404

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
            +M  +GV+P+ V++   L  C+H+ LVD+G+ +F+SM+ +  V+P+  H+  +VD+L R
Sbjct: 405 REMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSR 464

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGRL+EA + +K + +      W  LLG C++Y +VE+  IA+ +L E+ S+N G++VLL
Sbjct: 465 AGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLL 524

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+  + + W +    RK M++R V K PG S+I+V   +H F   DKS+ +  EIY  L
Sbjct: 525 SNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFL 584

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           D +  K++  GY   T  VL D+ +EEKE  LC HSEKLAVAFG+++ +  +SI+VFKNL
Sbjct: 585 DYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNL 644

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RIC DCH+ IK ++K+   +IIVRD +RFH F+DG CSC+D+W
Sbjct: 645 RICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 184/401 (45%), Gaps = 41/401 (10%)

Query: 45  KIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGS 103
           K I+ Y+ S   +L  A  LF +I  P    +  ++  L    +   A+ +Y     +  
Sbjct: 16  KFIKVYSNS--GDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNC 73

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
              D L      KACA +  +    ++H   +R GF +D LLG  L+D+Y K      A+
Sbjct: 74  VEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGAR 133

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
            VF+ M  RD+ SW ++ +      L  EA+  F++M + G  +PN VTV   L AC  L
Sbjct: 134 LVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGE-RPNSVTVSSILPACTDL 192

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
              K G ++H ++    +  NV V +A+++MYA C  + +A  VFD++  R+  V+WN +
Sbjct: 193 KDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMS-RRDTVSWNVL 251

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           + A+ ++ +  + L +F +M   GV  +  S+ A +  C   G  +  + + + M N G 
Sbjct: 252 ITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGF 311

Query: 344 KPN---------------------------MKHY--------GSVVDLLGRAGRLQEACD 368
           KPN                            +H+         ++V +  + G L E   
Sbjct: 312 KPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDL-ELSR 370

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            V S+    D V W T++ A  ++G+ E A +  R++V+ G
Sbjct: 371 RVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSG 411



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 2/210 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NAV+ G   + +   A+    +M     + + +T +  L AC  + +L    QIH ++ 
Sbjct: 283 WNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIF 342

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           RH F  D    T L+ +YAK G++  +++VF  M  RD  SWN +I   +      EA+ 
Sbjct: 343 RHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALL 402

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDM 254
           LF+ M   GV +PN VT  G L+ C H     EG  I + + R+  ++ +    + ++D+
Sbjct: 403 LFREMVDSGV-RPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDV 461

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
            ++ G L++A+E    +    +   W  ++
Sbjct: 462 LSRAGRLEEAYEFIKKMPIEPTAGAWGALL 491



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 119/252 (47%), Gaps = 2/252 (0%)

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           L    + VY+  G++  A+ +FD++   D+ +W  LI+ L +   + EA+  +   + + 
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
             +P+++ +L    AC  L       ++HE         +V++ NA+IDMY KC   + A
Sbjct: 73  CVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGA 132

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
             VF+ +  R  +++W +M   +   G    AL  F +MG  G +P+ V+  + L AC  
Sbjct: 133 RLVFEGMPFR-DVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTD 191

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
              +  G  +   +   G+  N+    ++V++      +++A  +  S+S   D V W  
Sbjct: 192 LKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSR-RDTVSWNV 250

Query: 385 LLGACQLYGDVE 396
           L+ A  L  + E
Sbjct: 251 LITAYFLNKECE 262


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/519 (38%), Positives = 310/519 (59%), Gaps = 13/519 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++A + G A       A+   RQML    + + +T    L  CA V AL    +IH + +
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392

Query: 136 RH-------GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGLAQ 186
           ++       G   + ++   L+D+YAK  ++ +A+ +FD +    RD+ +W  +I G +Q
Sbjct: 393 KYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQ 452

Query: 187 GNLASEAVDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREERLDMN 244
              A++A++L   M  E    +PN  T+  AL AC  L A + G +IH Y +R ++  + 
Sbjct: 453 HGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP 512

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + V N +IDMYAKCG +  A  VFDN+   K+ VTW +++  + +HG G  AL +F++M 
Sbjct: 513 LFVSNCLIDMYAKCGSISDARLVFDNMMA-KNEVTWTSLMTGYGMHGYGEEALGIFDEMR 571

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRL 363
           R G K D V+ L  L AC+H+G++D G+  FN M    GV P  +HY  +VDLLGRAGRL
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRL 631

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
             A  +++ + M    V+W   L  C+++G VE+ E A+ K+ E+ SN+ G + LLSNLY
Sbjct: 632 NAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLY 691

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A   RW DV R+R  M+++ VKK PG S++E       FF  DK+H   +EIY+ L + M
Sbjct: 692 ANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHM 751

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            +IK+ GY   T   LHD+ +EEK++ L  HSEKLA+A+G+++T +  +I++ KNLR+C 
Sbjct: 752 QRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCG 811

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH     +S++ + +II+RD  RFH FK+G+CSCK YW
Sbjct: 812 DCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 176/367 (47%), Gaps = 15/367 (4%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
             + KC +   V  IH K L   + T          + S +I  Y    +  L++A +L 
Sbjct: 33  PFIHKCKTISQVKLIHQKLLSFGILTLN--------LTSHLISTYI--SVGCLSHAVSLL 82

Query: 66  RQINAPS---TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           R+   PS      +N+++R    +      +  +  M   S   D  T  F  KAC  + 
Sbjct: 83  RRF-PPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEIS 141

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           ++      H+  L  GF+++  +G  L+ +Y++   +  A+KVFDEM V D+ SWN++I 
Sbjct: 142 SVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIE 201

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
             A+      A+++F RM  E   +P+ +T++  L  C  LG    G ++H +     + 
Sbjct: 202 SYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMI 261

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            N+ V N ++DMYAKCG++D+A  VF N+   K +V+WN MV  ++  G    A+ LFE+
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSV-KDVVSWNAMVAGYSQIGRFEDAVRLFEK 320

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M    +K D V++ AA+      GL  + + +   M + G+KPN     SV+      G 
Sbjct: 321 MQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGA 380

Query: 363 LQEACDI 369
           L    +I
Sbjct: 381 LMHGKEI 387


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/442 (43%), Positives = 282/442 (63%), Gaps = 3/442 (0%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +  TT++    ++G +  A++VFD M  R++ SWN++I+G  + +   +A+++F  M+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
             GV + N      AL AC   GA   G +I+ ++ +  ++++  +  AV+DMY KCG +
Sbjct: 223 ALGV-EGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCV 281

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           D+A+ VFD++  R  L TWN M+  FAVHG    ALELF QM  AGV PDDV+ L  L A
Sbjct: 282 DEAWGVFDSLPAR-GLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTA 340

Query: 322 CNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C HAG V +G R  N + +  G++P  +HYG +VDL GRAG+L EA  ++  + M  D+ 
Sbjct: 341 CAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLA 400

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +   LLGAC+++GDV++ E    +++++  +N G +VLL+NL A   RWD+VG+VR+ M 
Sbjct: 401 VLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMD 460

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
            R+V K  G S IEV G   +F   +  H + REIY    +++ +I+  GY   T   LH
Sbjct: 461 ERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALH 520

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           D+ EE+KE AL  HSEKLA+AFGL+      ++++ KNLR+CRDCH+  K +S+V+ REI
Sbjct: 521 DVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREI 580

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           +VRDR RFH FKDG CSCKDYW
Sbjct: 581 VVRDRSRFHHFKDGMCSCKDYW 602


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/485 (40%), Positives = 297/485 (61%), Gaps = 4/485 (0%)

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
           +RG  R + +T    L       +L E  ++HS V   G   D ++GT L+++Y K   +
Sbjct: 3   IRGVER-NKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSV 61

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM-KMEGVFKPNEVTVLGALA 218
             A+  F+++   ++ SW+A++A  AQ   A  A++L++ M        PN VT +  L 
Sbjct: 62  EEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLD 121

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC  LGA  EG KIH  + E   D ++VVCNA+++ Y +CG L  A  VFD ++ R+ ++
Sbjct: 122 ACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMR-RRDVI 180

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W++M+ AFA  G    A+EL+ +M   G  PDD+ +++ L AC+++G+V+     F S+
Sbjct: 181 SWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSI 240

Query: 339 -ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
             +  V+P ++HY  +VD+LGRAG+L++A D+++ +      +L+ T+L AC+LY DVE 
Sbjct: 241 VGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVER 300

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
            E A+  + E+   N   ++ L+N+Y+A +R  D  R+RK M+ R +KK PG S+IEV  
Sbjct: 301 GEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLD 360

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            +H+F   DK H +  EIY ++  +  ++KE GY   T  VL D+ E+EKEN L YHSEK
Sbjct: 361 RVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEK 420

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LA+AFGLIST     +++ KNLR+C DCH   K+ISKV  REI+VRD  RFH F DG CS
Sbjct: 421 LAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCS 480

Query: 578 CKDYW 582
           C DYW
Sbjct: 481 CNDYW 485



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 128/228 (56%), Gaps = 8/228 (3%)

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M++ GV + N+VT +  L+     G+ +EG ++H  +    L+++V+V  A+++MY KC 
Sbjct: 1   MEIRGVER-NKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQ 59

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG--RAGVKPDDVSYLA 317
            +++A   F+ I  R ++V+W+ M+ A+A +G    ALEL+ +MG  R G+ P+ V+++ 
Sbjct: 60  SVEEARAAFEKIS-RPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFIT 118

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            L AC+  G + +G ++  ++A  G   ++    ++V+  GR G L +A  IV       
Sbjct: 119 LLDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDA-KIVFDGMRRR 177

Query: 378 DMVLWQTLLGACQLYGDVEMA-EIASRKLVEMGSNNCGDFVLLSNLYA 424
           D++ W +++ A    G V+ A E+  R L E    +  D + +S L+A
Sbjct: 178 DVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPD--DIIFISVLFA 223



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 15/292 (5%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR----SDALTCSFALK 116
           A A F +I+ P+   ++A+L   A +     A+  YR+M  GS R     + +T    L 
Sbjct: 64  ARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREM--GSARKGMAPNRVTFITLLD 121

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC+ + AL E  +IH+ V   GF  D ++   L++ Y + G +  AK VFD M  RD+ S
Sbjct: 122 ACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVIS 181

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK-EGDKIHEY 235
           W+++I+  AQ     EA++L+ RM  EG   P+++  +  L AC + G  +  GD     
Sbjct: 182 WSSMISAFAQRGRVDEAMELYHRMLSEGTL-PDDIIFISVLFACSNSGVVEASGDFFRSI 240

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD--- 292
           + + +++  +     ++D+  + G L  A ++   +      + + TM+ A  ++ D   
Sbjct: 241 VGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVER 300

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
           G  A E+  ++      P    Y+      + A    D  R+   M   G+K
Sbjct: 301 GEAAAEVVFELDPENSSP----YITLANIYSAAKRPKDAARIRKLMEERGIK 348


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/614 (35%), Positives = 343/614 (55%), Gaps = 45/614 (7%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL  C++  A++    +++ +H++  G  ++ +  V + +I  Y     N +  A  +F
Sbjct: 263 SLLNSCNTPEALNRG--RRIHSHISERG-LETDMI-VANALITMYC--KCNSVQEAREIF 316

Query: 66  RQINAPSTNDFNAVLRGLAHSS-KPTNAVLWYRQMLRGSHR----SDALTCSFALKACAR 120
            +++      ++A++ G A S  K   ++    Q+L    R     + +T    L+AC  
Sbjct: 317 DRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTA 376

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV-------------------- 160
             AL +  QIH+ + + GF  D  L T + ++YAK G I                     
Sbjct: 377 HGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSF 436

Query: 161 -----------SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN 209
                      SA+KVF EM  R++ SWN +IAG AQ     +  +L   MK EG F+P+
Sbjct: 437 LSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEG-FQPD 495

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
            VTV+  L ACG L   + G  +H    +  L+ + VV  ++I MY+KCG + +A  VFD
Sbjct: 496 RVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFD 555

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
            +  R + V WN M+  +  HGDG  A++LF++M +  V P++++  A + AC+ AGLV 
Sbjct: 556 KMSNRDT-VAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQ 614

Query: 330 DGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +G  +F  M  +  + P  +HYG +VDLLGRAGRLQEA + ++S+    D+ +W  LLGA
Sbjct: 615 EGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGA 674

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448
           C+ + +V++AE A+  ++E+  +    ++ LSN+YA   RWDD  +VR+ M +R +KK  
Sbjct: 675 CKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDR 734

Query: 449 GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKE 508
           G S IE+ G IH F   D +H +   I+ +L+ +  ++KE GY      VLHD+ + +KE
Sbjct: 735 GESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKE 794

Query: 509 NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
            ALC+HSEKLA+A+GL+ T   T I++ KNLR+C DCH   K ISK+  REI+ RD  RF
Sbjct: 795 KALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRF 854

Query: 569 HRFKDGACSCKDYW 582
           H F +G CSC D+W
Sbjct: 855 HYFNNGTCSCGDFW 868



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 208/445 (46%), Gaps = 45/445 (10%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  Y  S   E++ A  +F ++   +   + A+++  A   K   A   Y QML+
Sbjct: 194 VATALITMY--SKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQ 251

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                +A+T    L +C    AL    +IHSH+   G   D ++   L+ +Y K   +  
Sbjct: 252 AGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQE 311

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQ-GNLASEAVD----LFKRMKMEGVFKPNEVTVLGA 216
           A+++FD M  RD+ SW+A+IAG AQ G    E++D    L +RM+ EGVF PN+VT +  
Sbjct: 312 AREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVF-PNKVTFMSI 370

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN------ 270
           L AC   GA ++G +IH  + +   +++  +  A+ +MYAKCG + +A +VF        
Sbjct: 371 LRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNV 430

Query: 271 ----------IKC--------------RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
                     IKC               +++V+WN M+  +A +GD  +  EL   M   
Sbjct: 431 VAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAE 490

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           G +PD V+ +  L AC     ++ G  +       G++ +     S++ +  + G++ EA
Sbjct: 491 GFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEA 550

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGD-VEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
             +   +S   D V W  +L     +GD +E  ++  R L E  S N    + L+ + +A
Sbjct: 551 RTVFDKMS-NRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPN---EITLTAVISA 606

Query: 426 YERWDDV--GRVRKAMKNRDVKKVP 448
             R   V  GR    M   D K  P
Sbjct: 607 CSRAGLVQEGREIFRMMQEDFKMTP 631



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 196/386 (50%), Gaps = 13/386 (3%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + +I FY  S   ++A A  +FR++       +++++   A ++ P  A   + +M   +
Sbjct: 95  NSLINFY--SKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
              + +T    LKAC     L +  +IH+ V   G   D  + T L+ +Y+K GEI  A 
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVAC 212

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           +VF +M  R++ SW A+I   AQ    +EA +L+++M   G+  PN VT +  L +C   
Sbjct: 213 EVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGI-SPNAVTFVSLLNSCNTP 271

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
            A   G +IH +I E  L+ +++V NA+I MY KC  + +A E+FD +  ++ +++W+ M
Sbjct: 272 EALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS-KRDVISWSAM 330

Query: 284 VMAFAVHGDGPR-----ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +  +A  G   +       +L E+M R GV P+ V++++ L AC   G ++ G ++   +
Sbjct: 331 IAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAEL 390

Query: 339 ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           +  G + +     ++ ++  + G + EA  +   ++   ++V W + L      GD+  A
Sbjct: 391 SKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLSMYIKCGDLSSA 449

Query: 399 EIASRKLVEMGSNNCGDFVLLSNLYA 424
           E   +   EM + N   + L+   YA
Sbjct: 450 E---KVFSEMPTRNVVSWNLMIAGYA 472



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 154/274 (56%), Gaps = 3/274 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           ++ CA+     +   +H  +   G   D  LG +L++ Y+K  ++ SA++VF  M +RD+
Sbjct: 63  IEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDV 122

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            +W+++IA  A  N  ++A D F+RM  +   +PN +T L  L AC +    ++G KIH 
Sbjct: 123 VTWSSMIAAYAGNNHPAKAFDTFERM-TDANIEPNRITFLSILKACNNYSILEKGRKIHT 181

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            ++   ++ +V V  A+I MY+KCG +  A EVF  +  R ++V+W  ++ A A H    
Sbjct: 182 IVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTER-NVVSWTAIIQANAQHRKLN 240

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            A EL+EQM +AG+ P+ V++++ L +CN    ++ G R+ + ++  G++ +M    +++
Sbjct: 241 EAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALI 300

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            +  +   +QEA +I   +S   D++ W  ++  
Sbjct: 301 TMYCKCNSVQEAREIFDRMS-KRDVISWSAMIAG 333


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/565 (37%), Positives = 333/565 (58%), Gaps = 19/565 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND----FNA 78
           +QL  H+T  G  +++ F V + +I  Y    L  +A A  +F +   P ++     +NA
Sbjct: 73  QQLHCHVTKGG-CETEPF-VLTALISMYCKCGL--VADARKVFEE--NPQSSQLSVCYNA 126

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           ++ G   +SK T+A   +R+M       D++T    +  C     L+    +H   ++ G
Sbjct: 127 LISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGG 186

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
             ++  +  + + +Y K G + + +++FDEM V+ + +WNA+I+G +Q  LA + ++L++
Sbjct: 187 LDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYE 246

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
           +MK  GV  P+  T++  L++C HLGA K G ++ + +       NV V NA I MYA+C
Sbjct: 247 QMKSSGVC-PDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARC 305

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G L KA  VFD I   KSLV+W  M+  + +HG G   L LF+ M + G++PD   ++  
Sbjct: 306 GNLAKARAVFD-IMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMV 364

Query: 319 LCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           L AC+H+GL D G+ LF +M     ++P  +HY  +VDLLGRAGRL EA + ++S+ +  
Sbjct: 365 LSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEP 424

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
           D  +W  LLGAC+++ +V+MAE+A  K++E   NN G +VL+SN+Y+  +  + + R+R 
Sbjct: 425 DGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRV 484

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            M+ R  +K PG+SY+E  G +H F   D+SH +  E++  LDE+   + E   A    C
Sbjct: 485 MMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVME--LAGNMDC 542

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
              D GEE        HSE+LA+AFG++++   T I V KNLR+C DCH  +K +SK+ +
Sbjct: 543 ---DRGEEVSSTTR-EHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVD 598

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           R+ +VRD  RFH FKDG CSCKDYW
Sbjct: 599 RQFVVRDASRFHYFKDGVCSCKDYW 623



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 189/385 (49%), Gaps = 7/385 (1%)

Query: 68  INAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET 127
           + A ++  +N  LR LA+ S  + ++  YR MLR     DA +  F LK+CA +      
Sbjct: 13  VAAVASTPWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSG 72

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS--WNALIAGLA 185
            Q+H HV + G   +  + T L+ +Y K G +  A+KVF+E       S  +NALI+G  
Sbjct: 73  QQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYT 132

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
             +  ++A  +F+RMK  GV   + VT+LG +  C        G  +H    +  LD  V
Sbjct: 133 ANSKVTDAAYMFRRMKETGV-SVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEV 191

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V N+ I MY KCG ++    +FD +   K L+TWN ++  ++ +G     LEL+EQM  
Sbjct: 192 AVLNSFITMYMKCGSVEAGRRLFDEMPV-KGLITWNAVISGYSQNGLAYDVLELYEQMKS 250

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           +GV PD  + ++ L +C H G    G  +   + + G  PN+    + + +  R G L +
Sbjct: 251 SGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAK 310

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A  +   + + + +V W  ++G   ++G  E+  +    +++ G    G   ++     +
Sbjct: 311 ARAVFDIMPVKS-LVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACS 369

Query: 426 YERWDDVG-RVRKAMKNRDVKKVPG 449
           +    D G  + +AMK R+ K  PG
Sbjct: 370 HSGLTDKGLELFRAMK-REYKLEPG 393


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/548 (38%), Positives = 307/548 (56%), Gaps = 38/548 (6%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           P+   +N ++ GL  S +  +AVL   +M       DA   S AL A   V  +    Q+
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQL 178

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H +V++ G   DA + T L+D+Y K G      +VFDE    D+AS NAL+AGL++    
Sbjct: 179 HGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQV 238

Query: 191 SEA-----------------------------------VDLFKRMKMEGVFKPNEVTVLG 215
           SEA                                   VDLF+ M+ EG+ +PN VT+  
Sbjct: 239 SEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGI-EPNSVTIPC 297

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            L A  ++ A   G   H +   +    ++ V +A++DMYAKCG +  A  +F+ +  R 
Sbjct: 298 VLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR- 356

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
           ++V+WN M+  +A+HG+   A+ LF  M  +  KPD V++   L AC+ AG  ++G   F
Sbjct: 357 NVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYF 416

Query: 336 NSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           N M +  G+ P M+HY  +V LLGRAG+L +A DI+  +    D  +W +LLG+C+++G+
Sbjct: 417 NEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGN 476

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           V +AE+A+  L ++   N G++VLLSN+YA+ + WD V R+R  MK   +KK  G S+IE
Sbjct: 477 VVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIE 536

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYH 514
           +   +H     D SH     I EKL  +  +++  G+A  T  VLHD+ E+EK++ L  H
Sbjct: 537 IKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVH 596

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SEKLAVA GLISTS  T +QV KNLRIC DCH+ +K IS    REI VRD  RFH FKDG
Sbjct: 597 SEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDG 656

Query: 575 ACSCKDYW 582
            CSC DYW
Sbjct: 657 KCSCADYW 664



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 149/368 (40%), Gaps = 75/368 (20%)

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           G   DA + ++LL  Y + G    A+ V D M  R +  W+ALIA  A    A  A  L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 198 KRMKMEGV----------------------------------FKPNEVTVLGALAACGHL 223
           +RM+ +GV                                  F P+   V  AL+A G +
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
           G    G+++H Y+ +    ++  V  A+IDMY KCG  D+   VFD       + + N +
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDE-SSHMDVASCNAL 228

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           V   + +     AL LF +    G++ + VS+ + +  C   G   + V LF  M + G+
Sbjct: 229 VAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGI 288

Query: 344 KPN----------------MKHYGS-------------------VVDLLGRAGRLQEACD 368
           +PN                + H  S                   +VD+  + GR+++A  
Sbjct: 289 EPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARM 348

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428
           I +++    ++V W  ++G   ++G+ E A    R +    S    D V  + +  A  +
Sbjct: 349 IFEAMPY-RNVVSWNAMIGGYAMHGEAENAVRLFRSM--QSSKEKPDLVTFTCVLGACSQ 405

Query: 429 --WDDVGR 434
             W + GR
Sbjct: 406 AGWTEEGR 413


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/567 (36%), Positives = 322/567 (56%), Gaps = 29/567 (5%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQI--NAPSTNDFNAVLRGLA-HSSKPTNAV-LWYR 97
           V S +++ YA +   ++++A  +F  +  +      +NA++ G A H      A+ L+ R
Sbjct: 298 VASALVDMYASN--EQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSR 355

Query: 98  QMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157
                       T +  L ACAR         +H +V++    ++  +   L+D+YA++G
Sbjct: 356 MEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLG 415

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK---------- 207
            +  A  +F  + +RDI SWN LI G     L SEA  L + M++               
Sbjct: 416 RMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDD 475

Query: 208 ---------PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
                    PN +T++  L  C  L A   G +IH Y     L+ ++ V +A++DMYAKC
Sbjct: 476 TSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKC 535

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLA 317
           G L  A  VFD +  R++++TWN ++MA+ +HG G  AL LF++M   G   P++V+++A
Sbjct: 536 GCLALARAVFDRLP-RRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIA 594

Query: 318 ALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
           AL AC+H+GLVD G+ LF  M  + G +P    +  VVD+LGRAGRL EA  I+ S++ G
Sbjct: 595 ALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPG 654

Query: 377 TDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
              V  W T+LGAC+L+ +V++  IA+ +L E+  +    +VLL N+Y+A   W++   V
Sbjct: 655 EHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEV 714

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           R  M+ R V K PG S+IE+ G IH+F   + +H +  +++  +D +  +++  GY   T
Sbjct: 715 RGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDT 774

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
           SCVLHD+ E EK   L YHSEKLA+AFGL+      +I+V KNLR+C DCH+  K IS++
Sbjct: 775 SCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRM 834

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
             REI++RD  RFH F+DG CSC DYW
Sbjct: 835 VGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 137/266 (51%), Gaps = 15/266 (5%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++  L    +   AV     M+    R D +T + AL AC+R+  L    ++H+ VL
Sbjct: 228 WNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVL 287

Query: 136 RHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFD---EMGVRDIASWNALIAGLAQ-GNLA 190
           +   L A++ + + L+D+YA   ++  A++VFD   E G R +  WNA+I G AQ G + 
Sbjct: 288 KDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHG-RQLGMWNAMICGYAQHGGMD 346

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
            EA++LF RM+ E    P+E T+ G L AC     +   + +H Y+ +  +  N  V NA
Sbjct: 347 EEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNA 406

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM------- 303
           ++DMYA+ G +D+A  +F  I  R  +V+WNT++    V G    A +L  +M       
Sbjct: 407 LMDMYARLGRMDEAHTIFAMIDLRD-IVSWNTLITGCIVQGLISEAFQLVREMQLPSSAA 465

Query: 304 -GRAGVKPDDVSYLAALCACNHAGLV 328
            G   ++ DD S     C  N+  L+
Sbjct: 466 SGETMLEGDDTSVDGQRCMPNNITLM 491



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 141/318 (44%), Gaps = 18/318 (5%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFL--ADALLGTTLLDVYAKVGEIVSAKK 164
           D      A+K+ A +     T  IH   LR   L      +   LL  YA+ G++ +A  
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 165 VF--DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
           +F      +RD  S+N+LI+ L        A+D  + M  +   + +  T++  L AC H
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLAD--HEVSSFTLVSVLLACSH 164

Query: 223 LG--AWKEGDKIHEY-IREERLD--MNVVVCNAVIDMYAKCGLLDKAFEVF-DNIKCRKS 276
           L     + G + H + ++   LD        NA++ MYA+ GL+D A  +F  +      
Sbjct: 165 LADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGD 224

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG--VRL 334
           LVTWNTM+      G    A+++   M   GV+PD V++ +AL AC+   L+  G  V  
Sbjct: 225 LVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHA 284

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS-MGTDMVLWQTLLGACQLYG 393
           F  + +  +  N     ++VD+     ++  A  +   V   G  + +W  ++     +G
Sbjct: 285 F-VLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHG 343

Query: 394 --DVEMAEIASRKLVEMG 409
             D E  E+ SR   E G
Sbjct: 344 GMDEEAIELFSRMEAEAG 361


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/543 (38%), Positives = 310/543 (57%), Gaps = 38/543 (6%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G  H      A+  +R+M     + D  T +  L ACA         Q+H+++L
Sbjct: 259 WNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYIL 318

Query: 136 R---HGFLADAL-LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA------------ 179
           R      L  +L +   L  +Y K G++  A++VF++M V+D+ SWNA            
Sbjct: 319 RTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRID 378

Query: 180 -------------------LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
                              +I+GLAQ     E++ LF RMK EG F+P +    GA+ AC
Sbjct: 379 EAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEG-FEPCDYAFAGAIIAC 437

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
             L A   G ++H  +     D ++   NA+I MYAKCG+++ A  +F  +    S V+W
Sbjct: 438 AWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDS-VSW 496

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           N M+ A   HG G +ALELFE M +  + PD +++L  L  C+HAGLV++G R F SM+ 
Sbjct: 497 NAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSG 556

Query: 341 C-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             G+ P   HY  ++DLL RAG+  EA D+++++ +     +W+ LL  C+++G++++  
Sbjct: 557 LYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGI 616

Query: 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
            A+ +L E+   + G +VLLSN+YA   RWDDV +VRK M+++ VKK PG S+IEV   +
Sbjct: 617 QAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKV 676

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H F   D  H + + +Y  L+E+  K+++ GY   T  VLHD+  E+KE  L  HSEKLA
Sbjct: 677 HVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLA 736

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           V FGL+      +++VFKNLRIC DCH+  K +SKV  REI+VRD  RFH FK+G CSC 
Sbjct: 737 VGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCG 796

Query: 580 DYW 582
           +YW
Sbjct: 797 NYW 799



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 112/496 (22%), Positives = 213/496 (42%), Gaps = 114/496 (22%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           A LQ+C  +  +S+   + + AH+  +G F+ + + + +++I+ Y  S  ++L  AH LF
Sbjct: 18  AQLQQCCPHNPMSYSIARTVHAHMIASG-FKPRGY-ILNRLIDVYCKS--SDLVSAHHLF 73

Query: 66  RQINAPS---------------------------------TNDFNAVLRGLAHSSKPTNA 92
            +I  P                                  T  +NA++ G +H++    A
Sbjct: 74  DEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGA 133

Query: 93  VLWYRQMLRGSHRSDALTCSFALKACARVLA-LFETLQIHSHVLRHG--FLA-------- 141
           +  +R +LR   R D  T +  L A A ++    +  QIH  V++ G  F+         
Sbjct: 134 IELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLS 193

Query: 142 ------------------------------DALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
                                         D L  TT++  Y + GE+ +A++  D M  
Sbjct: 194 VFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTE 253

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           + + +WNA+I+G        EA+++F++M + G+ + +E T    L+AC + G +  G +
Sbjct: 254 KLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGI-QWDEFTYTSVLSACANAGFFLHGKQ 312

Query: 232 IHEYI--REER--LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR------------- 274
           +H YI   E R  LD ++ V NA+  +Y KCG +D+A +VF+ +  +             
Sbjct: 313 VHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYV 372

Query: 275 -----------------KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
                            ++L+TW  M+   A +G G  +L+LF +M   G +P D ++  
Sbjct: 373 NAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAG 432

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           A+ AC     +  G +L   +   G   ++    +++ +  + G ++ A  +  ++    
Sbjct: 433 AIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY-L 491

Query: 378 DMVLWQTLLGACQLYG 393
           D V W  ++ A   +G
Sbjct: 492 DSVSWNAMIAALGQHG 507



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 147/362 (40%), Gaps = 90/362 (24%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE--------------------- 168
           +H+H++  GF     +   L+DVY K  ++VSA  +FDE                     
Sbjct: 37  VHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGN 96

Query: 169 ------------MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT---V 213
                       +G+RD   +NA+I G +  N    A++LF+ +   G F+P+  T   V
Sbjct: 97  SNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNG-FRPDNFTFTSV 155

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC--------------- 258
           LGALA    +   K+  +IH  + +        V NA++ ++ KC               
Sbjct: 156 LGALALI--VEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAA 213

Query: 259 -------------------------GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
                                    G LD A +  D +   K +V WN M+  +  HG  
Sbjct: 214 RKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMT-EKLVVAWNAMISGYVHHGFF 272

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             ALE+F +M   G++ D+ +Y + L AC +AG    G ++   +     +P++    SV
Sbjct: 273 LEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSV 332

Query: 354 VDLLG----RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-----EIASRK 404
            + L     + G++ EA  +   + +  D+V W  +L      G ++ A     E+  R 
Sbjct: 333 NNALATLYWKCGKVDEARQVFNQMPV-KDLVSWNAILSGYVNAGRIDEAKSFFEEMPERN 391

Query: 405 LV 406
           L+
Sbjct: 392 LL 393



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 133/294 (45%), Gaps = 21/294 (7%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A + F ++   +   +  ++ GLA +     ++  + +M            + A+ ACA 
Sbjct: 380 AKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAW 439

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL    Q+H+ ++R GF +    G  L+ +YAK G + +A  +F  M   D  SWNA+
Sbjct: 440 LAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAM 499

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IA L Q    ++A++LF+ M  E +  P+ +T L  L+ C H G  +EG   H Y +   
Sbjct: 500 IAALGQHGHGAQALELFELMLKEDIL-PDRITFLTVLSTCSHAGLVEEG---HRYFKS-- 553

Query: 241 LDMNVVVCNA------VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD-- 292
           +     +C        +ID+  + G   +A ++ + +        W  ++    +HG+  
Sbjct: 554 MSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMD 613

Query: 293 -GPRALE-LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
            G +A E LFE M +      D +Y+         G  DD  ++   M + GVK
Sbjct: 614 LGIQAAERLFELMPQ-----HDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVK 662



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 22/257 (8%)

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           + N +ID+Y K   L  A  +FD I+ +  +V   T++ A +  G+   A E+F      
Sbjct: 52  ILNRLIDVYCKSSDLVSAHHLFDEIR-QPDIVARTTLIAAHSSAGNSNLAREIFFAT-PL 109

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           G++ D V Y A +   +H       + LF  +   G +P+   + SV+  L      ++ 
Sbjct: 110 GIR-DTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQ 168

Query: 367 CD-----IVKSVSMGTDMVLWQTLLG-----ACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           C      +VKS S     VL   LL      A            A+RKL +  +    D 
Sbjct: 169 CQQIHCAVVKSGSGFVTSVL-NALLSVFVKCASSPLVSSSSLMAAARKLFDEMTER--DE 225

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           +  + + A Y R  ++   R+ +     K V  ++ +  G V H FF      ++  E++
Sbjct: 226 LSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFF------LEALEMF 279

Query: 477 EKLDEIMFKIKEYGYAA 493
            K+  +  +  E+ Y +
Sbjct: 280 RKMYLLGIQWDEFTYTS 296


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/527 (39%), Positives = 323/527 (61%), Gaps = 5/527 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           +AYA  +F ++       +  V+   A ++  T A+   R++       D +     L A
Sbjct: 264 VAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLA 323

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C+ +  L    ++H + L+ G L+D ++   ++DVYA  G I  A ++F+ +  +D+ SW
Sbjct: 324 CSGLRCLSHAKEVHGYTLKRG-LSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSW 382

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            ++I+      LA+EA+ +F  MK E   +P+ +T++  L+A   L A  +G +IH +I 
Sbjct: 383 TSMISCYVHNGLANEALGVFYLMK-ETSVEPDSITLVSILSAAASLSALNKGKEIHGFIF 441

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
            +   +     N+++DMYA CG L+ A++VF   +  KSLV W TM+ A+ +HG G  A+
Sbjct: 442 RKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTR-SKSLVLWTTMINAYGMHGRGKAAV 500

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
           ELF  M    + PD +++LA L AC+H+GL+++G RL  +M     ++P  +HY  +VDL
Sbjct: 501 ELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDL 560

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           LGRA  L+EA   VKS+ +     +W   LGAC+++ + ++ EIA++KL+++  ++ G +
Sbjct: 561 LGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSY 620

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VL+SN++AA  RW DV  VR  MK   +KK PG S+IEVG  +H F   DKSH +  +IY
Sbjct: 621 VLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIY 680

Query: 477 EKLDEIMFKI-KEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
           +KL +I  K+ KE GY   T  VLH++G+EEK   L  HSE+LA+A+GL+STSE T I++
Sbjct: 681 QKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRI 740

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH   KL+SK + RE+IVRD  RFH F+DG CSC D+W
Sbjct: 741 TKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 185/375 (49%), Gaps = 12/375 (3%)

Query: 15  GAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTN 74
           G V  IH       L     + S +F V + ++  YA    N++  A  LF ++N    N
Sbjct: 21  GVVEDIHRGAEIHGLIIKCGYDSIVF-VANSLVSMYA--KCNDILGARKLFDRMN--ERN 75

Query: 75  D---FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIH 131
           D   +N+++   + + +   A+  +R+M +    ++  T   AL+AC         ++IH
Sbjct: 76  DVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIH 135

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
           + +L+   + D  +   L+ ++ + G++  A ++FDE+  +D  +WN++IAG  Q  L +
Sbjct: 136 AAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYN 195

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           EA+  F  ++ +   KP+EV+++  LAA G LG    G +IH Y  +  LD N+ + N +
Sbjct: 196 EALQFFCGLQ-DANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTL 254

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           IDMY+KC  +  A  VFD +   K L++W T++ A+A +     AL+L  ++   G+  D
Sbjct: 255 IDMYSKCCCVAYAGLVFDKM-INKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVD 313

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
            +   + L AC+    +     +       G+   M     ++D+    G +  A  + +
Sbjct: 314 TMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQ-NMIIDVYADCGNINYATRMFE 372

Query: 372 SVSMGTDMVLWQTLL 386
           S+    D+V W +++
Sbjct: 373 SIKC-KDVVSWTSMI 386



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 172/339 (50%), Gaps = 4/339 (1%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
             +++YA  +F +++      +N+++ G   +     A+ ++  +   + + D ++    
Sbjct: 160 FGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISI 219

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L A  R+  L    +IH++ +++   ++  +G TL+D+Y+K   +  A  VFD+M  +D+
Sbjct: 220 LAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDL 279

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW  +IA  AQ N  +EA+ L ++++ +G+   + + +   L AC  L       ++H 
Sbjct: 280 ISWTTVIAAYAQNNCHTEALKLLRKVQTKGM-DVDTMMIGSTLLACSGLRCLSHAKEVHG 338

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           Y  +  L  ++++ N +ID+YA CG ++ A  +F++IKC K +V+W +M+  +  +G   
Sbjct: 339 YTLKRGLS-DLMMQNMIIDVYADCGNINYATRMFESIKC-KDVVSWTSMISCYVHNGLAN 396

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            AL +F  M    V+PD ++ ++ L A      ++ G  +   +   G         S+V
Sbjct: 397 EALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLV 456

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           D+    G L+ A  +    +    +VLW T++ A  ++G
Sbjct: 457 DMYACCGSLENAYKVF-ICTRSKSLVLWTTMINAYGMHG 494



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 146/283 (51%), Gaps = 4/283 (1%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF 166
           D+ T    LKAC  V  +    +IH  +++ G+ +   +  +L+ +YAK  +I+ A+K+F
Sbjct: 9   DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLF 68

Query: 167 DEMGVR-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           D M  R D+ SWN++I+  +      EA+ LF+ M+  GV   N  T++ AL AC     
Sbjct: 69  DRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGV-GANTYTLVAALQACEDSSF 127

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            K G +IH  I +    ++V V NA++ M+ + G +  A  +FD +   K  +TWN+M+ 
Sbjct: 128 KKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELD-EKDNITWNSMIA 186

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
            F  +G    AL+ F  +  A +KPD+VS ++ L A    G + +G  +        +  
Sbjct: 187 GFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDS 246

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           N++   +++D+  +   +  A  +V    +  D++ W T++ A
Sbjct: 247 NLRIGNTLIDMYSKCCCVAYA-GLVFDKMINKDLISWTTVIAA 288


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/435 (43%), Positives = 278/435 (63%), Gaps = 3/435 (0%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           ++  Y + G++  A+ +FD M  RD  SW A+IAG AQ  L  EA+++   MK +G    
Sbjct: 318 MISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGE-SL 376

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           N  T   AL+AC  + A + G ++H  +     +   +V NA++ MY KCG +D+A++VF
Sbjct: 377 NRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVF 436

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
             ++  K +V+WNTM+  +A HG G +AL +FE M  AGVKPD+++ +  L AC+H GL 
Sbjct: 437 QGVQ-HKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLT 495

Query: 329 DDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           D G   F+SM  + G+ PN KHY  ++DLLGRAG L+EA ++++++    D   W  LLG
Sbjct: 496 DRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLG 555

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           A +++G++E+ E A+  + +M  +N G +VLLSNLYAA  RW DV ++R  M+   V+K 
Sbjct: 556 ASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKT 615

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
           PG+S++EV   IH F   D  H +   IY  L+E+  K+K  GY + T  VLHD+ EEEK
Sbjct: 616 PGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEK 675

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           ++ L YHSEKLAVAFG+++      I+V KNLR+C DCH+ IK ISK+  R IIVRD  R
Sbjct: 676 KHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHR 735

Query: 568 FHRFKDGACSCKDYW 582
           +H F +G CSC+DYW
Sbjct: 736 YHHFSEGICSCRDYW 750



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 129/270 (47%), Gaps = 7/270 (2%)

Query: 35  FQSKLFP-VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAV 93
           F+   FP + S  I         +LA A  LF  +    +  + A++ G A +     A+
Sbjct: 304 FEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAM 363

Query: 94  LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153
               +M R     +  T   AL ACA + AL    Q+H  V+R G+    L+G  L+ +Y
Sbjct: 364 NMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMY 423

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
            K G I  A  VF  +  +DI SWN ++AG A+     +A+ +F+ M   GV KP+E+T+
Sbjct: 424 CKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGV-KPDEITM 482

Query: 214 LGALAACGHLGAWKEGDK-IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           +G L+AC H G    G +  H   ++  +  N      +ID+  + G L++A  +  N+ 
Sbjct: 483 VGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMP 542

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
                 TW  ++ A  +HG+    +EL EQ
Sbjct: 543 FEPDAATWGALLGASRIHGN----MELGEQ 568



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 129/284 (45%), Gaps = 40/284 (14%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           +L  YA+   +  A+ +FD M  +D+ SWNA+++G  +     EA D+F RM  +     
Sbjct: 101 MLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK----- 155

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           N ++  G LAA    G  +E  ++     E + D  ++ CN ++  Y K  +L  A ++F
Sbjct: 156 NSISWNGLLAAYVRSGRLEEARRLF----ESKSDWELISCNCLMGGYVKRNMLGDARQLF 211

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
           D I  R  L++WNTM+  +A  GD  +A  LFE+   + V+ D  ++ A + A    G++
Sbjct: 212 DQIPVR-DLISWNTMISGYAQDGDLSQARRLFEE---SPVR-DVFTWTAMVYAYVQDGML 266

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           D+  R+F+ M      P  +     V + G A          K + MG            
Sbjct: 267 DEARRVFDEM------PQKREMSYNVMIAGYAQ--------YKRMDMGR----------- 301

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV 432
            +L+ ++    I S  ++  G    GD     NL+    + D V
Sbjct: 302 -ELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSV 344



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 144/333 (43%), Gaps = 19/333 (5%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++   ++  +N +L     S +   A    R++       + ++C+  +    +
Sbjct: 145 ARDVFDRMPHKNSISWNGLLAAYVRSGRLEEA----RRLFESKSDWELISCNCLMGGYVK 200

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              L +  Q+   +     + D +   T++  YA+ G++  A+++F+E  VRD+ +W A+
Sbjct: 201 RNMLGDARQLFDQIP----VRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAM 256

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +    Q  +  EA  +F  M  +     N V + G          +K  D   E   E  
Sbjct: 257 VYAYVQDGMLDEARRVFDEMPQKREMSYN-VMIAG-------YAQYKRMDMGRELFEEMP 308

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              N+   N +I  Y + G L +A  +FD +  R S V+W  ++  +A +G    A+ + 
Sbjct: 309 FP-NIGSWNIMISGYCQNGDLAQARNLFDMMPQRDS-VSWAAIIAGYAQNGLYEEAMNML 366

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M R G   +  ++  AL AC     ++ G ++   +   G +       ++V +  + 
Sbjct: 367 VEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKC 426

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           G + EA D+ + V    D+V W T+L     +G
Sbjct: 427 GCIDEAYDVFQGVQH-KDIVSWNTMLAGYARHG 458



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 14/202 (6%)

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           Y +    D + V C   I  + + G  D A  VFD +  R S V++N M+  +  +    
Sbjct: 23  YPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNS-VSYNAMISGYLRNAKFS 81

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            A +LF++M       D  S+   L        + D   LF+SM     + ++  + +++
Sbjct: 82  LARDLFDKMPHK----DLFSWNLMLTGYARNRRLRDARMLFDSMP----EKDVVSWNAML 133

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE--IASRKLVEMGSNN 412
               R+G + EA D+   +    + + W  LL A    G +E A     S+   E+ S N
Sbjct: 134 SGYVRSGHVDEARDVFDRMPH-KNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCN 192

Query: 413 C--GDFVLLSNLYAAYERWDDV 432
           C  G +V  + L  A + +D +
Sbjct: 193 CLMGGYVKRNMLGDARQLFDQI 214


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/581 (37%), Positives = 334/581 (57%), Gaps = 10/581 (1%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
            ++ ++ C+S G++     KQ+       G   S+LF V S + + Y  S    +  A  
Sbjct: 44  FSSAIRACASLGSIEMG--KQMHCLALKFG-IGSELF-VGSNLEDMY--SKCGAMFDACK 97

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++       + A++ G +   +   A+L +++M+      D       L AC  + A
Sbjct: 98  VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKA 157

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD-EMGVRDIASWNALIA 182
                 +HS V++ GF +D  +G  L D+Y+K G++ SA  VF  +   R++ S+  LI 
Sbjct: 158 CKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLID 217

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G  +     + + +F  ++ +G+ +PNE T    + AC +  A ++G ++H  + +   D
Sbjct: 218 GYVETEQIEKGLSVFVELRRQGI-EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFD 276

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            +  V + ++DMY KCGLL++A + FD I    + + WN++V  F  HG G  A+++FE+
Sbjct: 277 EDPFVSSILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFGQHGLGKDAIKIFER 335

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAG 361
           M   GVKP+ +++++ L  C+HAGLV++G+  F SM    GV P  +HY  V+DLLGRAG
Sbjct: 336 MVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAG 395

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           RL+EA + +  +    +   W + LGAC+++GD EM ++A+ KLV++   N G  VLLSN
Sbjct: 396 RLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSN 455

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YA   +W+DV  VR  M++ +VKK+PG+S+++VG   H F   D SH +   IYEKLD 
Sbjct: 456 IYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDT 515

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           ++ +IK  GY   T  V  D+ +  KE  L  HSE++AVAF LIS      I V KNLR+
Sbjct: 516 LLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRV 575

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH  IK ISKV  R+IIVRD  RFH F DG+CSC DYW
Sbjct: 576 CVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
           M  R++ SW A+I+GL+Q +  SEA+  F  M++ G   P +     A+ AC  LG+ + 
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEM 59

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G ++H    +  +   + V + + DMY+KCG +  A +VF+ + C K  V+W  M+  ++
Sbjct: 60  GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC-KDEVSWTAMIDGYS 118

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK 348
             G+   AL  F++M    V  D     + L AC        G  + +S+   G + ++ 
Sbjct: 119 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 178

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
              ++ D+  +AG ++ A ++      G D      +   C + G VE  +I
Sbjct: 179 VGNALTDMYSKAGDMESASNV-----FGIDSECRNVVSYTCLIDGYVETEQI 225


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/586 (37%), Positives = 346/586 (59%), Gaps = 21/586 (3%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL  C+    +  IH + ++   T      S LF + S+I+    +S L +  YA  +F 
Sbjct: 31  LLTDCTDLSKLKQIHAQAIRNFSTHN----SSLF-LYSRILH---VSSLIDFDYACRVFN 82

Query: 67  QINAPSTNDFNAVLRGLAHS--SKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           QI+ P++  +N ++   A S   K     ++YR +  GS   D  T  F LKACA V AL
Sbjct: 83  QIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFAL 142

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
            E  Q H+ + + G   D  +G +L+ +YA  G +  A KVF++M +R + SWN +I   
Sbjct: 143 SEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAY 202

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER---L 241
            Q  L   A+ LF  ++M+  F+P+  T+   ++AC  +GA   G   H Y+  +    +
Sbjct: 203 VQSGLFENALKLF--VEMQNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAM 260

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
             +V++ ++++DMY+KCG L  A +VF+ +  +  L +WN+M++A A+HG G  AL+ F 
Sbjct: 261 AGDVLINSSLVDMYSKCGSLRMAQQVFETMP-KHDLNSWNSMILALAMHGRGQAALQCFS 319

Query: 302 QMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGR 359
           ++       P+ V+++  L ACNH G+V DG + F+ M N   ++P ++HYG +VDLL R
Sbjct: 320 RLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLLSR 379

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGAC-QLYGDVEMAE-IASRKLVEMGSNNCGDFV 417
           +G + EA ++V ++ +  D V+W++LL AC +    VE++E +A + L    + + G +V
Sbjct: 380 SGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQSEKTISSGVYV 439

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           +LS +YA+  +W+DVG +RK M +  V K PG S IE+ G+ H+FF  D SH + +EIY 
Sbjct: 440 MLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIKEIYG 499

Query: 478 KLDEIMFKIKEYGYAAGTS-CVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
            +D I  K++  GY+   S   + D  +  K+ +L  HSE+LA+AFGL++    T +++F
Sbjct: 500 VIDLIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLHSERLAIAFGLLNLKPGTPVRIF 559

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+C DCH V KLIS+++N EII+RDR RFH FK G CSC D+W
Sbjct: 560 KNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFKHGMCSCMDFW 605


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/437 (44%), Positives = 277/437 (63%), Gaps = 3/437 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            T++  Y + G I  A+K+FD M  RD  SW A+I+G AQ     EA+++F  MK +G  
Sbjct: 329 NTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGE- 387

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
             N  T   AL+ C  + A + G ++H  + +   +    V NA++ MY KCG  D+A +
Sbjct: 388 SSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEAND 447

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ I+  K +V+WNTM+  +A HG G +AL LFE M +AGVKPD+++ +  L AC+H+G
Sbjct: 448 VFEGIE-EKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSG 506

Query: 327 LVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           L+D G   F SM  +  VKP  KHY  ++DLLGRAGRL+EA ++++++        W  L
Sbjct: 507 LIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGAL 566

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGA +++G+ E+ E A+  + +M   N G +VLLSNLYAA  RW DVG++R  M+   V+
Sbjct: 567 LGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQ 626

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           KV G+S++EV   IH F   D  H +   IY  L+E+  K++  GY + T  VLHD+ EE
Sbjct: 627 KVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEE 686

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE+ L YHSEKLAVAFG+++      I+V KNLR+C+DCH+ IK ISK+  R II+RD 
Sbjct: 687 EKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDS 746

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F +G CSC DYW
Sbjct: 747 HRFHHFSEGICSCGDYW 763



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 124/253 (49%), Gaps = 11/253 (4%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           +A A  LF  +       + A++ G A +     A+  + +M R    S+  T S AL  
Sbjct: 341 IAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALST 400

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA + AL    Q+H  V++ GF     +G  LL +Y K G    A  VF+ +  +D+ SW
Sbjct: 401 CADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSW 460

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N +IAG A+     +A+ LF+ MK  GV KP+E+T++G L+AC H G    G    EY  
Sbjct: 461 NTMIAGYARHGFGRQALVLFESMKKAGV-KPDEITMVGVLSACSHSGLIDRGT---EYFY 516

Query: 238 EERLDMNVVVCNA----VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD- 292
               D NV   +     +ID+  + G L++A  +  N+       +W  ++ A  +HG+ 
Sbjct: 517 SMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNT 576

Query: 293 --GPRALELFEQM 303
             G +A E+  +M
Sbjct: 577 ELGEKAAEMVFKM 589



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 155/362 (42%), Gaps = 40/362 (11%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFA-- 114
           L  AH LF  +       +NA+L G A +     A   + +M  R S   + L  ++   
Sbjct: 124 LGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHN 183

Query: 115 --LKACARVLALFETLQ----IHSHVLRHGFLADALLG-----------------TTLLD 151
             LK   R   LFE+      I  + L  G++   +LG                  T++ 
Sbjct: 184 GRLKEARR---LFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMIS 240

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
            YA+VG++  AK++F+E  +RD+ +W A+++G  Q  +  EA   F  M ++     NE+
Sbjct: 241 GYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK-----NEI 295

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           +    LA            ++ E +       N+   N +I  Y + G + +A ++FD +
Sbjct: 296 SYNAMLAGYVQYKKMVIAGELFEAMPCR----NISSWNTMITGYGQNGGIAQARKLFDMM 351

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
             R   V+W  ++  +A +G    AL +F +M R G   +  ++  AL  C     ++ G
Sbjct: 352 PQR-DCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELG 410

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
            ++   +   G +       +++ +  + G   EA D+ + +    D+V W T++     
Sbjct: 411 KQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEE-KDVVSWNTMIAGYAR 469

Query: 392 YG 393
           +G
Sbjct: 470 HG 471



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 14/198 (7%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D      +L  Y +   +  A K+FD M  +D+ SWNA+++G AQ     EA ++F +M 
Sbjct: 107 DLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP 166

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
                  N ++  G LAA  H G  KE  ++     E + +  ++  N ++  Y K  +L
Sbjct: 167 HR-----NSISWNGLLAAYVHNGRLKEARRLF----ESQSNWELISWNCLMGGYVKRNML 217

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
             A ++FD +  R  +++WNTM+  +A  GD  +A  LF +   + ++ D  ++ A +  
Sbjct: 218 GDARQLFDRMPVR-DVISWNTMISGYAQVGDLSQAKRLFNE---SPIR-DVFTWTAMVSG 272

Query: 322 CNHAGLVDDGVRLFNSMA 339
               G+VD+  + F+ M 
Sbjct: 273 YVQNGMVDEARKYFDEMP 290



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 133/304 (43%), Gaps = 22/304 (7%)

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
            D +     +  + + G   SA +VF+ M  R   S+NA+I+G  +    S A DLF +M
Sbjct: 44  PDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKM 103

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
               +F  N   +L        LG   E  K+ + + ++    +VV  NA++  YA+ G 
Sbjct: 104 PERDLFSWN--VMLTGYVRNRRLG---EAHKLFDLMPKK----DVVSWNAMLSGYAQNGF 154

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +D+A EVF+ +  R S ++WN ++ A+  +G    A  LFE      +    +S+   + 
Sbjct: 155 VDEAREVFNKMPHRNS-ISWNGLLAAYVHNGRLKEARRLFESQSNWEL----ISWNCLMG 209

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
                 ++ D  +LF+ M       ++  + +++    + G L +A  +     +  D+ 
Sbjct: 210 GYVKRNMLGDARQLFDRMP----VRDVISWNTMISGYAQVGDLSQAKRLFNESPI-RDVF 264

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
            W  ++     Y    M + A +   EM   N   +  +   Y  Y++    G + +AM 
Sbjct: 265 TWTAMVSG---YVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMP 321

Query: 441 NRDV 444
            R++
Sbjct: 322 CRNI 325


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/437 (41%), Positives = 282/437 (64%), Gaps = 3/437 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           +T++ V      ++ A+K+FD MGVR+  SW+A+I G    +   EA+D+F+ M++ G+ 
Sbjct: 211 STIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGI- 269

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            P+  T+LG L AC HL A + G   H Y+       + ++CNA+IDMY+KCG +  A E
Sbjct: 270 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFARE 329

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ +  R  +V+WN M++ + +HG G  AL LF  +   G+KPDD++++  L +C+H+G
Sbjct: 330 VFNRMD-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSG 388

Query: 327 LVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LV +G   F++M+ +  + P M+H   +VD+LGRAG + EA   ++++    D+ +W  L
Sbjct: 389 LVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSAL 448

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           L AC+++ ++E+ E  S+K+  +G  + G+FVLLSN+Y+A  RWDD   +R   K+  +K
Sbjct: 449 LSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLK 508

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K+PG S+IE+ G++H F   D+SH++  +I  KL+E++ ++K  GY A  S V  D+ EE
Sbjct: 509 KIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEE 568

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE  L YHSEKLA+AFG+++      I V KNLR+C DCH  IK ++ +  REI VRD 
Sbjct: 569 EKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDA 628

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH FK+G C+C D+W
Sbjct: 629 NRFHHFKNGTCNCGDFW 645



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 156/338 (46%), Gaps = 41/338 (12%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           N++  A  LF +I  PS   +N ++R  A +     A+  Y  ML    R +  T  F L
Sbjct: 57  NQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVL 116

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           KAC+ +LA+ + ++IHSH    G  +D  + T L+D YAK G +V A+++F  M  RD+ 
Sbjct: 117 KACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVV 176

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           +WNA+IAG +   L  +AV L  +M+ EG+  PN  T++G L  C  L            
Sbjct: 177 AWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC-PNSSTIVGVLPTCQCL------------ 223

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
                             +YA+        ++FD +  R   V+W+ M+  +        
Sbjct: 224 ------------------LYAR--------KIFDVMGVRNE-VSWSAMIGGYVASDCMKE 256

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           AL++F  M  +G+ PD  + L  L AC+H   +  G      +   G   +     +++D
Sbjct: 257 ALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALID 316

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +  + G++  A ++   +    D+V W  ++    ++G
Sbjct: 317 MYSKCGKISFAREVFNRMDR-HDIVSWNAMIIGYGIHG 353



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 168/349 (48%), Gaps = 14/349 (4%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+AC +  +L E  +IH H L++   AD+ +   L  +Y    ++V A+++FDE+    +
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
             WN +I   A       A+DL+  M   GV +PN+ T    L AC  L A ++G +IH 
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGV-RPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           + +   L+ +V VC A++D YAKCG+L +A  +F ++   + +V WN M+   +++G   
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYGLCD 192

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            A++L  QM   G+ P+  + +  L  C     +    ++F+ M   GV+ N   + +++
Sbjct: 193 DAVQLIMQMQEEGICPNSSTIVGVLPTCQ---CLLYARKIFDVM---GVR-NEVSWSAMI 245

Query: 355 DLLGRAGRLQEACDIVKSVSMG---TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
                +  ++EA DI + + +     D+     +L AC     ++    +   L+  G  
Sbjct: 246 GGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFA 305

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
              D ++ + L   Y +   +   R+     D   +  ++ + +G  IH
Sbjct: 306 T--DTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIH 352



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 9/291 (3%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L YA  +F  +   +   ++A++ G   S     A+  +R M       D  T    L A
Sbjct: 223 LLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPA 282

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C+ + AL      H +++  GF  D L+   L+D+Y+K G+I  A++VF+ M   DI SW
Sbjct: 283 CSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSW 342

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI- 236
           NA+I G     L  EA+ LF  +   G+ KP+++T +  L++C H G   EG    + + 
Sbjct: 343 NAMIIGYGIHGLGMEALGLFHDLLALGL-KPDDITFICLLSSCSHSGLVMEGRLWFDAMS 401

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           R+  +   +  C  ++D+  + GL+D+A     N+     +  W+ ++ A  +H    + 
Sbjct: 402 RDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIH----KN 457

Query: 297 LELFEQMGR--AGVKPDDVSYLAALCAC-NHAGLVDDGVRLFNSMANCGVK 344
           +EL E++ +    + P+       L    + AG  DD   +  +  + G+K
Sbjct: 458 IELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLK 508



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 2/180 (1%)

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           L  L AC    +  E  KIH++  +   + +  V + +  +Y  C  +  A  +FD I  
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP- 70

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
             S++ WN ++ A+A +G    A++L+  M   GV+P+  +Y   L AC+    ++DGV 
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + +     G++ ++    ++VD   + G L EA  +  S+S   D+V W  ++  C LYG
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH-RDVVAWNAMIAGCSLYG 189


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/581 (36%), Positives = 326/581 (56%), Gaps = 46/581 (7%)

Query: 41  PVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML 100
           P  + II  Y  +  ++L  A  L   +       +NA++ G  H      A    R+M 
Sbjct: 209 PAWTTIIAGYVRN--DDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMH 266

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLR-------HGFLADALLGTTLLDVY 153
               + D  T +  + A +         Q+H++VLR       H  L+   +   L+ +Y
Sbjct: 267 SLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLS---VNNALITLY 323

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNA-------------------------------LIA 182
            + G++V A++VFD+M V+D+ SWNA                               +I+
Sbjct: 324 TRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMIS 383

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           GLAQ     E + LF +MK+EG+ +P +    GA+A+C  LG+   G ++H  I +   D
Sbjct: 384 GLAQNGFGEEGLKLFNQMKLEGL-EPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHD 442

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            ++ V NA+I MY++CGL++ A  VF  +    S V+WN M+ A A HG G +A++L+E+
Sbjct: 443 SSLSVGNALITMYSRCGLVEAADTVFLTMPYVDS-VSWNAMIAALAQHGHGVQAIQLYEK 501

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAG 361
           M +  + PD +++L  L AC+HAGLV +G   F++M  C G+ P   HY  ++DLL RAG
Sbjct: 502 MLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAG 561

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
              EA ++ +S+       +W+ LL  C ++G++E+   A+ +L+E+     G ++ LSN
Sbjct: 562 MFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSN 621

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YAA  +WD+V RVRK M+ R VKK PG S+IEV  ++H F   D  H +   +Y  L++
Sbjct: 622 MYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQ 681

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           ++ ++++ GY   T  VLHD+  E+KE AL  HSEKLAV +G++      +I+VFKNLRI
Sbjct: 682 LVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRI 741

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH+  K ISKV +REIIVRDR RFH F++G CSC +YW
Sbjct: 742 CGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 178/423 (42%), Gaps = 83/423 (19%)

Query: 51  ALSPLNELAYAHALFR--QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDA 108
           A S    +  AH LF    ++   T  +NA++   +HS     A+  + QM R     D 
Sbjct: 71  AYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDP 130

Query: 109 LTCSFALKACARVLALFET--LQIHSHVLRHGFLA-----DALLG--------------- 146
            T S  L A + ++A  ET   Q+H  V + G L+     +AL+                
Sbjct: 131 FTFSSVLGALS-LIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCV 189

Query: 147 ----------------------TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
                                 TT++  Y +  ++V+A+++ + M      +WNA+I+G 
Sbjct: 190 LMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGY 249

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
                  EA DL +RM   G+ + +E T    ++A  + G +  G ++H Y+    +  +
Sbjct: 250 VHRGFYEEAFDLLRRMHSLGI-QLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPS 308

Query: 245 ----VVVCNAVIDMYAKCGLLDKAFEVFDNIKCR-------------------------- 274
               + V NA+I +Y +CG L +A  VFD +  +                          
Sbjct: 309 GHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFR 368

Query: 275 ----KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
               +SL+TW  M+   A +G G   L+LF QM   G++P D +Y  A+ +C+  G +D+
Sbjct: 369 EMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDN 428

Query: 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
           G +L + +   G   ++    +++ +  R G L EA D V       D V W  ++ A  
Sbjct: 429 GQQLHSQIIQLGHDSSLSVGNALITMYSRCG-LVEAADTVFLTMPYVDSVSWNAMIAALA 487

Query: 391 LYG 393
            +G
Sbjct: 488 QHG 490



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 131/302 (43%), Gaps = 60/302 (19%)

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFD--EMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
            D +  TT+L  Y+  G I  A ++F+   M +RD  S+NA+I   +  +    A+ LF 
Sbjct: 60  PDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFV 119

Query: 199 RMKMEGVFKPNEVT---VLGALAACGHLGAWKEG--DKIH-EYIREERLDMNVVVCNAVI 252
           +MK  G F P+  T   VLGAL+    L A +E    ++H E  +   L +  V+ NA++
Sbjct: 120 QMKRLG-FVPDPFTFSSVLGALS----LIADEETHCQQLHCEVFKWGALSVPSVL-NALM 173

Query: 253 DMYAKCG---------LLDKAFEVFDN------------------------IKCRKSL-- 277
             Y  C          L+  A ++FD                         +  R+ L  
Sbjct: 174 SCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEG 233

Query: 278 ------VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
                 V WN M+  +   G    A +L  +M   G++ D+ +Y + + A ++AGL + G
Sbjct: 234 MTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIG 293

Query: 332 VRLFNSMANCGVKPNMKHYGSV----VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
            ++   +    V+P+     SV    + L  R G+L EA  +   + +  D+V W  +L 
Sbjct: 294 RQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPV-KDLVSWNAILS 352

Query: 388 AC 389
            C
Sbjct: 353 GC 354


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/487 (39%), Positives = 299/487 (61%), Gaps = 3/487 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N V+ G A +    +A++  R+M     R D+ T S  L   A  + L +  +IH + +
Sbjct: 164 WNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAI 223

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R+G+ AD  +G++L+D+YAK   +  + +VF  +   D  SWN++IAG  Q  +  E + 
Sbjct: 224 RNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLK 283

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
            F++M +  + KPN V+    + AC HL     G ++H YI   R D NV + +A++DMY
Sbjct: 284 FFQQMLIAKI-KPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMY 342

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG +  A  +FD ++    +V+W  M+M +A+HG    A+ LF++M   GVKP+ V++
Sbjct: 343 AKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAF 401

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +A L AC+HAGLVD+  + FNSM  +  + P ++HY +V DLLGR GRL+EA + +  + 
Sbjct: 402 MAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMH 461

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           +     +W TLL AC+++ ++E+AE  S+KL  +   N G +VLLSN+Y+A  RW D  +
Sbjct: 462 IEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARK 521

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R AM+++ +KK P  S+IE+   +H F   DKSH  +  I E L  ++ +++  GY   
Sbjct: 522 LRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLD 581

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T+ VLHD+ EE+K   LC HSE+LA+ FG+IST   T+I+V KNLR+C DCH   K ISK
Sbjct: 582 TTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISK 641

Query: 555 VYNREII 561
           +  REI+
Sbjct: 642 IVGREIV 648



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 7/247 (2%)

Query: 151 DVYAKVGE----IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           DVY+K  +    + S +KVF+ M  RDI SWN +I+G AQ  +  +A+ + + M      
Sbjct: 134 DVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMG-NADL 192

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           +P+  T+   L          +G +IH Y      D +V + +++IDMYAKC  +D +  
Sbjct: 193 RPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCR 252

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF  +  +   ++WN+++     +G     L+ F+QM  A +KP+ VS+ + + AC H  
Sbjct: 253 VFYMLP-QHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLT 311

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            +  G +L   +       N+    ++VD+  + G ++ A  I   + +  DMV W  ++
Sbjct: 312 TLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMEL-YDMVSWTAMI 370

Query: 387 GACQLYG 393
               L+G
Sbjct: 371 MGYALHG 377


>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
 gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
          Length = 640

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/548 (39%), Positives = 323/548 (58%), Gaps = 24/548 (4%)

Query: 53  SPLNELAYAHALFRQINAPST------NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS 106
           S L  L  AH L  ++   ST        FN+V+ G A  + P  +   +R+M   +   
Sbjct: 99  SRLGCLPLAHQLLDEMPLESTPHTTLRTAFNSVISGCALHALPVASFALFRRMRAAAVGF 158

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA--KK 164
           DA+T    L A      L    Q+H+   R G   +  +   L+  YA+ G   +A  ++
Sbjct: 159 DAVT----LLALVPATPLSVVPQVHALAARVGLATETSVANCLMSTYARGGAFGAALARR 214

Query: 165 VFDEMGV--RDIASWNALIAGLAQGNLASEAVDLFKRMK-MEGV-FKPNEVTVLGALAAC 220
           VFDEM +  RD+ SWNA+++  AQ  LA +A++L++RM+  EG   +P+ VT++G L++ 
Sbjct: 215 VFDEMPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEPDAVTIVGVLSSA 274

Query: 221 GHLGAWKEGDKIHEYIRE--ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
            HLGA   G  +  Y+R+       NV +CNA+I+ +A+CG L +A ++FD +  RKS+V
Sbjct: 275 AHLGARGVGFDVEHYVRQRIPGFHTNVQLCNALINFHARCGSLPRAQQLFDEMP-RKSIV 333

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W  ++    +HG+G  A+ LFE+M   G++PD+V+ +A   AC+HAGL D+G R F++M
Sbjct: 334 SWTALITGHGMHGNGDVAVSLFERMVSEGIRPDNVAMVALFSACSHAGLYDEGRRYFSAM 393

Query: 339 ANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
            +   ++P ++HY  +VDLLGRAGRL+EA +++ S+ M  D  +W  LLGAC+++ +V++
Sbjct: 394 ESVYKLRPTLEHYTCMVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVDV 453

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
            E A  +++E+   N G +VL+SN+Y    + D V RVR  M+ R +KK PG SY+E  G
Sbjct: 454 GEEAFTRVIELEPKNVGYYVLMSNIYTDTGQLDCVARVRAMMRERGLKKEPGCSYVEHKG 513

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA---LCYH 514
            +H F   D SH + R IYE +  +   +KE       S V    G  EK  A   +  H
Sbjct: 514 RVHLFMADDHSHPQARRIYELVIRLELMVKEKS-GMRESEVAAAKGRMEKAAAQPLVGIH 572

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SEKLAVAFGL++T   + I V KNLR+C DCH  +K++S   NR  +VRD  RFHRF  G
Sbjct: 573 SEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKVVSATTNRAFLVRDASRFHRFDGG 632

Query: 575 ACSCKDYW 582
            CSCKDYW
Sbjct: 633 VCSCKDYW 640



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 173/392 (44%), Gaps = 28/392 (7%)

Query: 69  NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL 128
           +A ST  ++A +R L    +   ++   R     S    AL    ++ +CA +       
Sbjct: 13  DANSTEPWSARVRTLTRLGRHRESLALLRHG-DPSPPPHALALPASVISCAALSLPSGVA 71

Query: 129 QIHSHVLRHGFL--ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA------SWNAL 180
           QIH+   + G L  ADA L + LL  Y+++G +  A ++ DEM +          ++N++
Sbjct: 72  QIHALAAKRGLLPAADAYLLSALLTSYSRLGCLPLAHQLLDEMPLESTPHTTLRTAFNSV 131

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I+G A   L   +  LF+RM+   V   + VT+L  + A           ++H       
Sbjct: 132 ISGCALHALPVASFALFRRMRAAAVGF-DAVTLLALVPAT----PLSVVPQVHALAARVG 186

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAF--EVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRAL 297
           L     V N ++  YA+ G    A    VFD +    + LV+WN ++ A A +G    AL
Sbjct: 187 LATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDAL 246

Query: 298 ELFEQMGR---AGVKPDDVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNMKHYGS 352
           EL+ +M     +GV+PD V+ +  L +  H G    G  V  +      G   N++   +
Sbjct: 247 ELYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDVEHYVRQRIPGFHTNVQLCNA 306

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           +++   R G L  A  +   +   + +V W  L+    ++G+ ++A     ++V  G   
Sbjct: 307 LINFHARCGSLPRAQQLFDEMPRKS-IVSWTALITGHGMHGNGDVAVSLFERMVSEGIRP 365

Query: 413 CGDFVLLSNLYAAYER---WDDVGRVRKAMKN 441
             D V +  L++A      +D+  R   AM++
Sbjct: 366 --DNVAMVALFSACSHAGLYDEGRRYFSAMES 395


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/439 (42%), Positives = 289/439 (65%), Gaps = 3/439 (0%)

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           +G +L+ +YA+ G +  A+K FD +  +++ S+NA++ G A+   + EA  LF  +   G
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
           +   +  T    L+    +GA  +G++IH  + +     N  +CNA+I MY++CG ++ A
Sbjct: 121 I-GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAA 179

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
           F+VF+ ++ R ++++W +M+  FA HG   RALE+F +M   G KP++++Y+A L AC+H
Sbjct: 180 FQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 238

Query: 325 AGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
            G++ +G + FNSM    G+ P M+HY  +VDLLGR+G L EA + + S+ +  D ++W+
Sbjct: 239 VGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWR 298

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443
           TLLGAC+++G+ E+   A+  ++E   ++   ++LLSNL+A+  +W DV ++RK+MK R+
Sbjct: 299 TLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERN 358

Query: 444 VKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIG 503
           + K  G S+IEV   +H+F   + SH +  +IY++LD++  KIKE GY   T  VLHDI 
Sbjct: 359 LIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIE 418

Query: 504 EEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
           EE+KE  L  HSEK+AVAFGLISTS++  I++FKNLR+C DCH  IK IS    REI+VR
Sbjct: 419 EEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVR 478

Query: 564 DRVRFHRFKDGACSCKDYW 582
           D  RFH  K+G CSC DYW
Sbjct: 479 DSNRFHHIKNGVCSCNDYW 497



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 19/305 (6%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  YA S    +  A   F  +   +   +NA++ G A + K   A L + ++  
Sbjct: 61  VGNSLISMYARS--GRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIAD 118

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                 A T +  L   A + A+ +  QIH  +L+ G+ ++  +   L+ +Y++ G I +
Sbjct: 119 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 178

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A +VF+EM  R++ SW ++I G A+   A+ A+++F +M +E   KPNE+T +  L+AC 
Sbjct: 179 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKM-LETGTKPNEITYVAVLSACS 237

Query: 222 HLGAWKEGDKIHEYIREER---LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           H+G   EG K    + +E      M    C  ++D+  + GLL +A E  +++      +
Sbjct: 238 HVGMISEGQKHFNSMYKEHGIVPRMEHYAC--MVDLLGRSGLLVEAMEFINSMPLMADAL 295

Query: 279 TWNTMVMAFAVHGD---GPRALEL-FEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVR 333
            W T++ A  VHG+   G  A E+  EQ      +PDD  +Y+        AG   D V+
Sbjct: 296 VWRTLLGACRVHGNTELGRHAAEMILEQ------EPDDPAAYILLSNLHASAGQWKDVVK 349

Query: 334 LFNSM 338
           +  SM
Sbjct: 350 IRKSM 354



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 110/263 (41%), Gaps = 45/263 (17%)

Query: 152 VYAKV---GEIVSAKKVFDEMGVRDIASWNALIAGLAQ-GNLASEAVDLFKRMKMEGVFK 207
           +YAK    G +  ++KVF++M   ++ SW A+I    Q G    EA++LF +M       
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM------- 53

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
                 + A   C                          V N++I MYA+ G ++ A + 
Sbjct: 54  ------ISASVNC--------------------------VGNSLISMYARSGRMEDARKA 81

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           FD I   K+LV++N +V  +A +     A  LF ++   G+     ++ + L      G 
Sbjct: 82  FD-ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 140

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           +  G ++   +   G K N     +++ +  R G ++ A  +   +    +++ W +++ 
Sbjct: 141 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMIT 199

Query: 388 ACQLYGDVEMAEIASRKLVEMGS 410
               +G    A     K++E G+
Sbjct: 200 GFAKHGFATRALEMFHKMLETGT 222


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/529 (39%), Positives = 313/529 (59%), Gaps = 6/529 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR--GSHRSD-ALTCSFA 114
           LA A ALF ++       ++A++   A   +P  A+  YR+MLR  GS   D   T S A
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSA 168

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L A           ++H HV+R G  ADA++ + L D+YAK G +  A+ VFD M VRD+
Sbjct: 169 LAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDV 228

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW A++          E   LF RM   G+ +PNE T  G L AC    + K G ++H 
Sbjct: 229 VSWTAMVERYFDARRDGEGFRLFVRMLRSGI-QPNEFTYAGVLRACAEFTSEKLGKQVHG 287

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            + + R   +    +A++ MY+K G +  A  VF  +  +  LV+W  M+  +A +G   
Sbjct: 288 RMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMP-KLDLVSWTAMISGYAQNGQPD 346

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSV 353
            AL  F+ + R+G +PD V+++  L AC HAGLVD G+ +F+S+ +  G++    HY  V
Sbjct: 347 EALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACV 406

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           +DLL R+G  + A +++ ++S+  +  LW +LLG C+++ +V +A  A+  L E+   N 
Sbjct: 407 IDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENP 466

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
             +V L+N+YA+   +D+V   R+ M+ + + K+P  S+IEVG  +H F   DK H +  
Sbjct: 467 ATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAE 526

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           ++Y  L ++  K++E GY A T  VLHD+ +E+K+  + YHSE+LAVAFG+I+T +   I
Sbjct: 527 QVYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPI 586

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +VFKNLRIC DCH  IKLISK+  REIIVRD  RFH FK+G+CSC+DYW
Sbjct: 587 KVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/541 (38%), Positives = 306/541 (56%), Gaps = 36/541 (6%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++ G   S    +AVL ++ M     + D  + S  L A   +      +QIH +V+
Sbjct: 178 WNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVI 237

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS---- 191
           + G   D  + + L+D+Y K         VF+EM   D+ + NAL+ GL++  L      
Sbjct: 238 KQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALE 297

Query: 192 -----------------------------EAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
                                        EA++LF+ M++EGV KPN VT+   L ACG+
Sbjct: 298 VFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGV-KPNSVTIPCLLPACGN 356

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           + A   G   H +     +  +V V +A+IDMYAKCG +  +   FD +  R +LV+WN+
Sbjct: 357 IAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNR-NLVSWNS 415

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NC 341
           ++  +A+HG    A+ +FE M R G KPD VS+   L AC   GL ++G   F+SM+ N 
Sbjct: 416 LMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNH 475

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIA 401
           GV+  M+HY  +V LLGR+GRL+EA  ++K +    D  +W  LL +C+++  V++ EIA
Sbjct: 476 GVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIA 535

Query: 402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHK 461
           ++++ E+   N G+++LLSN+YA+   W +V  VR  M++R +KK PG+S+IE+   +H 
Sbjct: 536 AKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHM 595

Query: 462 FFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVA 521
               D SH +  +I EKL ++  ++K+ GY   T  VL D+ E++KE  LC HSEKLAV 
Sbjct: 596 LLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVV 655

Query: 522 FGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDY 581
            GL++T     +QV KNLRICRDCH VIK IS    REI VRD  RFH+FK G CSC DY
Sbjct: 656 LGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDY 715

Query: 582 W 582
           W
Sbjct: 716 W 716



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 172/403 (42%), Gaps = 77/403 (19%)

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
           A+AH L   I+ P T    + L    H       +  +  ML      D+      +K C
Sbjct: 31  AHAHILKTGISLPETIQIFSKLNHFGH------VIRVFSYMLTQGIVPDSRVLPTVIKTC 84

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD----------- 167
           A + AL    Q+H   L  G   D+++ ++LL +Y +   +  A+ VFD           
Sbjct: 85  AALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSS 144

Query: 168 -----------------------EMGVR-DIASWNALIAGLAQGNLASEAVDLFKRMKME 203
                                  ++GV  ++ SWN +I+G  +     +AV +F+ M +E
Sbjct: 145 ALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLE 204

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC----- 258
           G+ KP+  +V   L A G L     G +IH Y+ ++ L  +  V +A+IDMY KC     
Sbjct: 205 GL-KPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASE 263

Query: 259 --------------------------GLLDKAFEVFDNIKCRK-SLVTWNTMVMAFAVHG 291
                                     GL+D A EVF   K    ++V+W +M+ + + +G
Sbjct: 264 MSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNG 323

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCAC-NHAGLVDDGVRLFNSMANCGVKPNMKHY 350
               ALELF +M   GVKP+ V+    L AC N A L+        S+ N G+  ++   
Sbjct: 324 KDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRN-GIFNDVYVG 382

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            +++D+  + GR+  A  +   +    ++V W +L+    ++G
Sbjct: 383 SALIDMYAKCGRML-ASRLCFDMMPNRNLVSWNSLMAGYAMHG 424



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 68/281 (24%)

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253
           + +F  M  +G+  P+   +   +  C  L A + G ++H +     L ++ VV ++++ 
Sbjct: 59  IRVFSYMLTQGIV-PDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLH 117

Query: 254 MYAKCGLLDKAFEVFDNIK--------------CRK--------------------SLVT 279
           MY +   L  A  VFD +                RK                    +LV+
Sbjct: 118 MYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVS 177

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           WN M+  F   G    A+ +F+ M   G+KPD  S  + L A     +   G+++   + 
Sbjct: 178 WNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVI 237

Query: 340 NCGVKPNMKHYGSVVDLLG-------------------------------RAGRLQEACD 368
             G+ P+     +++D+ G                               R G +  A +
Sbjct: 238 KQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALE 297

Query: 369 IVKSV-SMGTDMVLWQTLLGACQLYG-DVEMAEIASRKLVE 407
           + K    M  ++V W +++ +C   G D+E  E+     +E
Sbjct: 298 VFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIE 338


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/514 (39%), Positives = 297/514 (57%), Gaps = 5/514 (0%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           P    +NA +   + +     A+    +M    HR+D  T   AL + A  L       +
Sbjct: 4   PPGVAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYTLPPALNSAA--LLRLPADAL 61

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           HS +LR G  A   +   L+D YAK+    +A+ VFDEM  RD+ SW +L+ GLA+    
Sbjct: 62  HSLLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSH 121

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
             A+ +++ M   GV  P+E  V  AL++C    A + G  +H       LD  + V N+
Sbjct: 122 DSALQVYRDMVAAGV-GPDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSVGNS 180

Query: 251 VIDMYAKCGLLDKAFEVFDNIKC-RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           ++ MYAK G L +A +VFD  +  R   +TW  +++ +A +G G  +LE++  M R+G +
Sbjct: 181 LVSMYAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGCR 240

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           PD V+++  L AC+HAGLVD G   F SM A  G+ P   HY  +VDLLGRAGRL EA D
Sbjct: 241 PDYVTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMD 300

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428
           ++   +   D  +W+ LL AC+ + + E+AE A+  +  +   +   +V+LSNLY+   R
Sbjct: 301 LLNRSTTRLDATVWKALLAACRTHRNAELAEHAAAMVWRLDPTDAVPYVMLSNLYSRAGR 360

Query: 429 WDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKE 488
           W DV RVR +MK R + K PG S++   GV H F+  D+ H +  E+Y K++E+  +I+ 
Sbjct: 361 WGDVARVRTSMKARGITKEPGCSWVAANGVTHLFYVEDRRHPRAAEVYRKVEEMTERIRG 420

Query: 489 YGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDV 548
            GY A T+  L D G E +E  L +HSE+LAVAFGL++      I+VFKNLR+C DCH  
Sbjct: 421 QGYVADTAWALQDEGPEGREKGLAHHSERLAVAFGLLAVPAGAPIRVFKNLRVCGDCHAA 480

Query: 549 IKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IK++++ Y REI++RD   FH  KDGACSC DYW
Sbjct: 481 IKMVAQAYGREIVLRDSNCFHHMKDGACSCGDYW 514



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 136/308 (44%), Gaps = 13/308 (4%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +++ YA   L+    A A+F ++       + ++L GLA S    +A+  YR M+ 
Sbjct: 76  VANALVDAYA--KLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDSALQVYRDMVA 133

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D    + AL +CA   AL     +H+  +R        +G +L+ +YAK G +  
Sbjct: 134 AGVGPDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSVGNSLVSMYAKTGSLGE 193

Query: 162 AKKVFDEMGVR--DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
           AKKVFD   V   D  +W ALI G AQ     E+++++  M   G  +P+ VT +G L A
Sbjct: 194 AKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGC-RPDYVTFIGLLFA 252

Query: 220 CGHLGAWKEGDKIHEYIREER---LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
           C H G    G      ++ E       +   C  ++D+  + G LD+A ++ +    R  
Sbjct: 253 CSHAGLVDAGRAHFRSMQAEHGIAPGADHYAC--MVDLLGRAGRLDEAMDLLNRSTTRLD 310

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLF 335
              W  ++ A   H +   A      + R  + P D V Y+      + AG   D  R+ 
Sbjct: 311 ATVWKALLAACRTHRNAELAEHAAAMVWR--LDPTDAVPYVMLSNLYSRAGRWGDVARVR 368

Query: 336 NSMANCGV 343
            SM   G+
Sbjct: 369 TSMKARGI 376


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/532 (40%), Positives = 324/532 (60%), Gaps = 24/532 (4%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML---RGSHRS-DALTCSFALKACA 119
           LF +I   S   + +++ G   + +  +AV  ++++L    GS  S D +     L  C 
Sbjct: 35  LFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLLGC- 93

Query: 120 RVLALFETLQ-------IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
            V++ F  L        +H  V++ GF     +G TL+D YAK GE+  AK VFD M   
Sbjct: 94  -VVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVAK-VFDGMNES 151

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D   WN++IA  AQ  L++EA  +F  M   G F+ N V +   L+     GA + G  I
Sbjct: 152 DHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLS-----GALQLGKCI 206

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H  + +  L+ +V V  +++D+Y KC  ++ A + FD +K  K++ +W  MV  + +HG 
Sbjct: 207 HHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKV-KNVKSWTAMVAGYGMHGR 265

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG--VKPNMKHY 350
              A+E+F +M R+GVKP+ +++++ L AC+HAG++ +G   FN M  C   V+P ++HY
Sbjct: 266 AKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRM-KCEFIVEPGIEHY 324

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
             +VDLLGRAG L     ++K ++   D ++W +LLGAC+++ +VE+ EI++RKL E+  
Sbjct: 325 LCMVDLLGRAGYLX-CYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDX 383

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
           +NCG +VLLSN+YA   RWD+V R+R  MK+R + K PGFS +E+ G IH     DK H 
Sbjct: 384 SNCGYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEHP 443

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
           +  +IYE LD+   K++E GY    + VLHD+ EEEK   L  HSEKLAVAFG++++   
Sbjct: 444 QHEKIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVPG 503

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + I + KNLRIC DC+ VIKLI KV NREI+VRD  RFH FK+G+CSC DYW
Sbjct: 504 SIIHIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 21/233 (9%)

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME---------GVFKPNEVT 212
           ++ +FDE+  R + SW ++IAG  Q + A +AV +FK + +E         GVF  + V 
Sbjct: 32  SRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVF-VDSVL 90

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           +   ++A   LG     + +H  + +   +  V V N ++D YAK G +  A +VFD + 
Sbjct: 91  LGCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVA-KVFDGMN 149

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
                  WN+++  +A +G    A  +F  M    VK  +  Y A +     +G +  G 
Sbjct: 150 -ESDHYFWNSVIAEYAQNGLSAEAFSVFGDM----VKSGNFRYNAVIMDXGLSGALQLGK 204

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA-----CDIVKSVSMGTDMV 380
            + + +    ++ ++    S+VD+  +  R++ A     C  VK+V   T MV
Sbjct: 205 CIHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMV 257


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/521 (37%), Positives = 321/521 (61%), Gaps = 5/521 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++       +  ++   A SS+ + A+  +R   +   + D +     L+AC+ + +
Sbjct: 422 VFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKS 481

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           +    Q+HS+ +R+G L D +L   ++D+Y + GE+  A  +F+ +  +DI +W +++  
Sbjct: 482 ISLLKQVHSYAIRNGLL-DLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNC 540

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            A+  L  EAV LF +M   G+ +P+ V ++G L A   L +  +G +IH ++   +  +
Sbjct: 541 FAENGLLHEAVALFGKMLNAGI-QPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPV 599

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
              V ++++DMY+ CG ++ A +VFD  KC K +V W  M+ A  +HG G +A+ +F++M
Sbjct: 600 EGAVVSSLVDMYSGCGSMNYALKVFDEAKC-KDVVLWTAMINATGMHGHGKQAIYIFKRM 658

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGR 362
              GV PD VS+LA L AC+H+ LVD+G    + M +   ++P  +HY  VVDLLGR+G+
Sbjct: 659 LETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQ 718

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
            +EA   +KS+ +    V+W  LLGAC+++ + E+A IA+ KL+E+  +N G++VL+SN+
Sbjct: 719 TEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNV 778

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           +A   +W++V  +R  M  + ++K P  S+IE+G  +H F   D SH   + I+ KL EI
Sbjct: 779 FAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEI 838

Query: 483 MFKIKEYG-YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
             K++  G Y   TS VLHD+ EEEK + L  HSE+LA++FGLIST+  T +++ KNLR+
Sbjct: 839 TEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRV 898

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH+  KL+SK++ REI+VRD  RFH F  G CSC D+W
Sbjct: 899 CGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 152/316 (48%), Gaps = 13/316 (4%)

Query: 23  KQLQAHLTTTGQF-QSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           +QL AH   TG         + +K++  Y       L  AH LF  + A +   +NA++ 
Sbjct: 75  RQLHAHAVATGALGDDDAGFLATKLLFMYG--KCGRLPDAHRLFDGMPARTVFSWNALIG 132

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHR-----SDALTCSFALKACARVLALFETLQIHSHVLR 136
               S     AV  YR M R S        D  T +  LKAC          ++H   ++
Sbjct: 133 ACLSSGGAGEAVGVYRAM-RASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVK 191

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM-GVRDIASWNALIAGLAQGNLASEAVD 195
            G     L+   L+ +YAK G + SA +VF+ M   RD+ASWN+ I+G  Q  +  EA+D
Sbjct: 192 SGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALD 251

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF+RM+ +G F  N  T +G L  C  L     G ++H  + +   + N + CNA++ MY
Sbjct: 252 LFRRMQSDG-FSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN-IQCNALLVMY 309

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           A+CG +D A  VF  I   K  ++WN+M+  +  +     A++ F +M + G  PD    
Sbjct: 310 ARCGWVDSALRVFREIG-DKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACI 368

Query: 316 LAALCACNHAGLVDDG 331
           ++ L A  H G + +G
Sbjct: 369 VSLLSAVGHLGRLING 384



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 133/270 (49%), Gaps = 8/270 (2%)

Query: 123 ALFETLQIHSHVLRHGFLAD---ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           A+ E  Q+H+H +  G L D     L T LL +Y K G +  A ++FD M  R + SWNA
Sbjct: 70  AVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNA 129

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFK---PNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           LI        A EAV +++ M+         P+  T+   L ACG  G  + G ++H   
Sbjct: 130 LIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLA 189

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +  LD + +V NA++ MYAKCGLLD A  VF+ ++  + + +WN+ +     +G    A
Sbjct: 190 VKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEA 249

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           L+LF +M   G   +  + +  L  C     ++ G  L  ++  CG + N++    +V +
Sbjct: 250 LDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLV-M 308

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
             R G +  A  + + +    D + W ++L
Sbjct: 309 YARCGWVDSALRVFREIG-DKDYISWNSML 337



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 166/347 (47%), Gaps = 6/347 (1%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +FR+I       +N++L     +     A+ ++ +M++     D       L A   +  
Sbjct: 321 VFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGR 380

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L    ++H++ ++    +D  +  TL+D+Y K   +  + +VFD M ++D  SW  +IA 
Sbjct: 381 LINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIAC 440

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREERLD 242
            AQ +  SEA+  F+  + EG+ K + + +   L AC  L +     ++H Y IR   LD
Sbjct: 441 YAQSSRYSEAIGKFRTAQKEGI-KVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLD 499

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
           +  ++ N +ID+Y +CG +  A  +F+ +  +K +VTW +MV  FA +G    A+ LF +
Sbjct: 500 L--ILKNRIIDIYGECGEVCYALNIFEMLD-KKDIVTWTSMVNCFAENGLLHEAVALFGK 556

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M  AG++PD V+ +  L A      +  G  +   +             S+VD+    G 
Sbjct: 557 MLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGS 616

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           +  A  +        D+VLW  ++ A  ++G  + A    ++++E G
Sbjct: 617 MNYALKVFDEAKC-KDVVLWTAMINATGMHGHGKQAIYIFKRMLETG 662



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 158/314 (50%), Gaps = 11/314 (3%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N+ + G   +     A+  +R+M       ++ T    L+ CA +  L    ++H+ +L
Sbjct: 233 WNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALL 292

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + G   + +    LL +YA+ G + SA +VF E+G +D  SWN++++   Q  L +EA+D
Sbjct: 293 KCGTEFN-IQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAID 351

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
            F  M   G F P+   ++  L+A GHLG    G ++H Y  ++RLD ++ + N ++DMY
Sbjct: 352 FFGEMVQNG-FNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMY 410

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            KC  ++ +  VFD ++  K  V+W T++  +A       A+  F    + G+K D +  
Sbjct: 411 IKCYSVECSARVFDRMRI-KDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMM 469

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY---GSVVDLLGRAGRLQEACDIVKS 372
            + L AC  +GL    + L   + +  ++  +        ++D+ G  G +  A +I + 
Sbjct: 470 GSILEAC--SGL--KSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEM 525

Query: 373 VSMGTDMVLWQTLL 386
           +    D+V W +++
Sbjct: 526 LDK-KDIVTWTSMV 538



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           + ++L+ CS   ++S +  KQ+ ++    G        ++++II+ Y      E+ YA  
Sbjct: 469 MGSILEACSGLKSISLL--KQVHSYAIRNGLLD---LILKNRIIDIYG--ECGEVCYALN 521

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F  ++      + +++   A +     AV  + +ML    + D++     L A A + +
Sbjct: 522 IFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSS 581

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L +  +IH  ++R  F  +  + ++L+D+Y+  G +  A KVFDE   +D+  W A+I  
Sbjct: 582 LTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINA 641

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD-KIHEYIREERLD 242
                   +A+ +FKRM   GV  P+ V+ L  L AC H     EG   +   + + +L 
Sbjct: 642 TGMHGHGKQAIYIFKRMLETGV-SPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQ 700

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
                   V+D+  + G  ++A++   ++      V W  ++ A  +H
Sbjct: 701 PWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIH 748



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 5/140 (3%)

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM----GRAGVK 309
           MY KCG L  A  +FD +  R ++ +WN ++ A    G    A+ ++  M      AG  
Sbjct: 102 MYGKCGRLPDAHRLFDGMPAR-TVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAA 160

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           PD  +  + L AC   G    G  +       G+  +     ++V +  + G L  A  +
Sbjct: 161 PDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRV 220

Query: 370 VKSVSMGTDMVLWQTLLGAC 389
            + +  G D+  W + +  C
Sbjct: 221 FEWMRDGRDVASWNSAISGC 240


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/606 (34%), Positives = 333/606 (54%), Gaps = 72/606 (11%)

Query: 45  KIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH 104
           K++  YA     E   A  +F +I   +   FN ++R   ++    +A+L Y+ M     
Sbjct: 59  KLMRVYAAC--GEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGF 116

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLR----------HGFLA------------- 141
             D  T    LKA +R  +L+  LQIH  VL+          +G +A             
Sbjct: 117 VPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQ 176

Query: 142 --------DALLGTTLLDVYAKVGE----------------------------------- 158
                   D +   +++ VYA+ G                                    
Sbjct: 177 VLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTS 236

Query: 159 --IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
             ++  K++F ++  + + SWN +IA     ++  EAV L+ +M+  GV +P+ V+++  
Sbjct: 237 DNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGV-EPDVVSIVSV 295

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
           L A G L A   G ++H++   ++L  N+++ NA+IDMYAKCG L  A  VF+ ++ R  
Sbjct: 296 LPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFR-D 354

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFN 336
           +V+W +++ A+   G G  A+ +F +M  +G+ PD +++++ L AC+HAGL+DDG   FN
Sbjct: 355 VVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFN 414

Query: 337 SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
            MA CG+ P ++H+  VVDLLGRAG++ EA   ++ + +  D  +W  LL AC++Y ++ 
Sbjct: 415 LMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMN 474

Query: 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
           +  +A+ KL+ +   + G +VLLSN+YA   RW DV  +R  M+ + +KK+PG S +E+ 
Sbjct: 475 IGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELN 534

Query: 457 GVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSE 516
             +H F   D SH + ++IYE+LD ++ K+KE GY   T   LHD+ EE+KE  L  HSE
Sbjct: 535 DGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHSE 594

Query: 517 KLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
           KLAVAF +I+T   T I+V KNLR+C DCH   KLISK+  REII+RD  RFH F++G C
Sbjct: 595 KLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCC 654

Query: 577 SCKDYW 582
           SC DYW
Sbjct: 655 SCGDYW 660



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 112/215 (52%), Gaps = 7/215 (3%)

Query: 112 SFALKACARVLALFETL----QIHSHVLRHGFLA-DALLGTTLLDVYAKVGEIVSAKKVF 166
           SF    C R+L  +  +    ++H  VL   +L  +  +G  L+ VYA  GE   A+ +F
Sbjct: 18  SFTEDLCNRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIF 77

Query: 167 DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW 226
           DE+  +++  +N +I      +L  +A+ ++K M  +G F P+  T    L A     + 
Sbjct: 78  DEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQG-FVPDMYTYPCVLKASSRSDSL 136

Query: 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
             G +IH  + +  LD+N+ V N +I MY KC  L +A +V D I CR  +V+WN+MV  
Sbjct: 137 WVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCR-DVVSWNSMVSV 195

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           +A +G    ALEL  +M    +KP+D +  + L A
Sbjct: 196 YAQNGRFNDALELCREMEALNLKPNDCTMASLLPA 230


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 329/608 (54%), Gaps = 57/608 (9%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYA-LSPLNELAYAHALFRQINAPSTNDFNAV 79
           H++ L AHL  +G+  S      S +  F A L+  N L+YA  +  Q  A +    NA 
Sbjct: 21  HLRALHAHLVVSGRLASP-----SHLAAFLASLASSNHLSYARLVLPQRPA-TLLAHNAF 74

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK--------------ACARVLALF 125
           +R LA   +P  A   +R +       D  + +F ++                A V A  
Sbjct: 75  IRALARGPRPCLAFAAFRDL---PLPPDHYSLNFLVRAATALVASAAEEKHVSAEVNARL 131

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS------------------------ 161
           + +  H   +R G  AD  + + +L +YA +G++ S                        
Sbjct: 132 QAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALA 191

Query: 162 -------AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
                  A+ +FD M  RD  +W+A+IAG      + EA+ LF  M   G     E T++
Sbjct: 192 AGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGT-TVGEATLV 250

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L AC  +G    G  +H Y+R   + M++ +  A++DMY+KCG +  A EVF+++   
Sbjct: 251 SVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESM-AE 309

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           +++ TW + V   A++G G   L+LF++M  AG++P+ VS++A L  C+ AGLVD+G   
Sbjct: 310 RNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRAC 369

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           F+SM   GV P  +HYG +VDL GRAGRL +A   +  + M     +W  LL A +++  
Sbjct: 370 FDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNS 429

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           V++ + A  KL+ + S N    V LSN+YA  + W  V RVR  MK + VKKVPG+S IE
Sbjct: 430 VDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIE 489

Query: 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYH 514
           V G +H+F+   + H ++ EI   L E+  +++  GY A T  VL DI EEEKE A+  H
Sbjct: 490 VDGKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLH 549

Query: 515 SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           SEKLA+AFGLI   E   I++ KNLR+C DCH  IKL+SKV+NREI++RDR RFH FK G
Sbjct: 550 SEKLALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGG 609

Query: 575 ACSCKDYW 582
            CSC+DYW
Sbjct: 610 ECSCRDYW 617


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/581 (37%), Positives = 334/581 (57%), Gaps = 10/581 (1%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
            ++ ++ C+S G++     KQ+       G   S+LF V S + + Y  S    +  A  
Sbjct: 109 FSSAIRACASLGSIEMG--KQMHCLALKFG-IGSELF-VGSNLEDMY--SKCGAMFDACK 162

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++       + A++ G +   +   A+L +++M+      D       L AC  + A
Sbjct: 163 VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKA 222

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD-EMGVRDIASWNALIA 182
                 +HS V++ GF +D  +G  L D+Y+K G++ SA  VF  +   R++ S+  LI 
Sbjct: 223 CKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLID 282

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G  +     + + +F  ++ +G+ +PNE T    + AC +  A ++G ++H  + +   D
Sbjct: 283 GYVETEQIEKGLSVFVELRRQGI-EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFD 341

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            +  V + ++DMY KCGLL++A + FD I    + + WN++V  F  HG G  A+++FE+
Sbjct: 342 EDPFVSSILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFGQHGLGKDAIKIFER 400

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAG 361
           M   GVKP+ +++++ L  C+HAGLV++G+  F SM    GV P  +HY  V+DLLGRAG
Sbjct: 401 MVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAG 460

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           RL+EA + +  +    +   W + LGAC+++GD EM ++A+ KLV++   N G  VLLSN
Sbjct: 461 RLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSN 520

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YA   +W+DV  VR  M++ +VKK+PG+S+++VG   H F   D SH +   IYEKLD 
Sbjct: 521 IYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDT 580

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           ++ +IK  GY   T  V  D+ +  KE  L  HSE++AVAF LIS      I V KNLR+
Sbjct: 581 LLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRV 640

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH  IK ISKV  R+IIVRD  RFH F DG+CSC DYW
Sbjct: 641 CVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 136/272 (50%), Gaps = 7/272 (2%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           Q+H+ ++  G+     L   L+++Y+K GE+  A K+FD M  R++ SW A+I+GL+Q +
Sbjct: 26  QLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNS 85

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
             SEA+  F  M++ G   P +     A+ AC  LG+ + G ++H    +  +   + V 
Sbjct: 86  KFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVG 144

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           + + DMY+KCG +  A +VF+ + C K  V+W  M+  ++  G+   AL  F++M    V
Sbjct: 145 SNLEDMYSKCGAMFDACKVFEEMPC-KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV 203

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
             D     + L AC        G  + +S+   G + ++    ++ D+  +AG ++ A +
Sbjct: 204 TIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASN 263

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
           +      G D      +   C + G VE  +I
Sbjct: 264 V-----FGIDSECRNVVSYTCLIDGYVETEQI 290


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/491 (42%), Positives = 303/491 (61%), Gaps = 7/491 (1%)

Query: 97  RQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV 156
           R+MLR     D +  +  L+  +R   L E  ++ S  + H  +A  ++  TL+++Y K 
Sbjct: 283 REMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFS-AMEHRTVATTVVAGTLVNLYGKC 341

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
           G +  A++V D M VR   SW A+IA  AQ   A+EA++LF+ M +EG  +P+++T++  
Sbjct: 342 GRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGA-EPSDITLISV 400

Query: 217 LAACGHLGAWKEGDKIHEYIREERL-DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR- 274
           + +C  LG    G +IH  IR   L   ++++ NAVI MY KCG L+ A EVF+++  R 
Sbjct: 401 VDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRT 460

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGVR 333
           +S+VTW  M+ A+A +G G  A+ELF++M    G +P+ V++L+ L AC+H G ++    
Sbjct: 461 RSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWE 520

Query: 334 LFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIV-KSVSMGTDMVLWQTLLGACQL 391
            F SM  + GV P   HY  +VDLLGRAGRL EA  ++ +      D+V W   L ACQ+
Sbjct: 521 HFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQM 580

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
            GD+E ++ A++++ E+   N    VLLSN+YAA  R  DV R+R  MK+  VKK  G S
Sbjct: 581 NGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRS 640

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
           +IE+   +H+F  SD SH +  EIY +L+ +  +IKE GY   T  VL D+ EE+K   L
Sbjct: 641 WIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKAQLL 700

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
            YHSE+LA+A G+IST   T+++V KNLR+C DCH   K IS++  R+IIVRD  RFH F
Sbjct: 701 GYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHF 760

Query: 572 KDGACSCKDYW 582
           KDG CSC DYW
Sbjct: 761 KDGVCSCGDYW 771



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 170/377 (45%), Gaps = 26/377 (6%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           + L  A ALFR++    T    +VL+G AH+     A   + + + G+   DA  C+  +
Sbjct: 150 DRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDR-IGGAGDRDATACNAMI 208

Query: 116 KAC---ARV---LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
            A    ARV     LF  ++          L +A   + LL  YA+ G +  AKK FD M
Sbjct: 209 AAYGKNARVDLAEGLFAQIK----------LRNAASWSLLLLTYAQNGHLDLAKKSFDRM 258

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
             RD  ++ A+ A L+       A ++ + +    V   N +     L      G   E 
Sbjct: 259 PQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNAL-----LEGYSRTGDLDEV 313

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
            ++   + E R     VV   ++++Y KCG +D A  V D +  R S V+W  M+ A+A 
Sbjct: 314 RRLFSAM-EHRTVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTS-VSWTAMIAAYAQ 371

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV-KPNMK 348
           +G+   A+ LF+ M   G +P D++ ++ + +C   G +  G R+   + +  +   ++ 
Sbjct: 372 NGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLM 431

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
              +V+ + G+ G L+ A ++ +SV + T  +V W  ++ A    G  E A    +++V 
Sbjct: 432 LLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVI 491

Query: 408 MGSNNCGDFVLLSNLYA 424
            G         LS L A
Sbjct: 492 DGGTEPNRVTFLSVLSA 508



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 139/358 (38%), Gaps = 44/358 (12%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           ++ACA    L E   +H  + R     +  L   L+D++ K G+  +A+ VF+ + + + 
Sbjct: 14  IRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNE 73

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE------ 228
            SW+ +I      +   +A  LF  M     F  N   ++ A A    L   +E      
Sbjct: 74  YSWSCIIQAYVSSSRIHDARALFDSMPGFDAFTWN--IMIAAYARINRLDDARELFHGMI 131

Query: 229 --------GDKIHEYIREERLD-----------MNVVVCNAVIDMYAKCGLLDKAFEVFD 269
                      +  Y R +RL+            + V C +V+  YA  G L +A E+FD
Sbjct: 132 SGRDVVSWAILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFD 191

Query: 270 NI--KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
            I     +     N M+ A+  +     A  LF Q+          S+   L      G 
Sbjct: 192 RIGGAGDRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNA----ASWSLLLLTYAQNGH 247

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           +D   + F+ M     + +   + ++  +L   G L+ A ++++ +S   D++ W  LL 
Sbjct: 248 LDLAKKSFDRMP----QRDSIAFTAMTAVLSDQGELRGAREMLRYLS-AVDVIAWNALLE 302

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVL---LSNLYAAYERWDDVGRVRKAMKNR 442
                GD++      R    M        V+   L NLY    R DD  RV  AM  R
Sbjct: 303 GYSRTGDLDEVR---RLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVR 357


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/442 (43%), Positives = 291/442 (65%), Gaps = 3/442 (0%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +  T +L   +  G++ +A+++FD M  RD  +WNA++ G  +   + EA+ LF  M+
Sbjct: 189 DVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQ 248

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
             GV   +EVT++  L AC  +GA + G  +H Y+    + ++V +  A++DMY+KCG++
Sbjct: 249 KAGV-AVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVV 307

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
             + EVF+ ++ R ++ TW + +   A++G G   LELF++M  AG++P+ V+++A L  
Sbjct: 308 TMSMEVFETMRER-NIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRG 366

Query: 322 CNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C+ AGLV++G   F+SM +   V+P ++HYG +VDL GRAGRL +A D + S+ +     
Sbjct: 367 CSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEG 426

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +W  LL A +++ +V++ + A  KL E+ S N    VLLSN+YA    W  V +VR  MK
Sbjct: 427 VWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMK 486

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
           ++ VKK+PG S IEV G +H+FF   KSH ++++I   L E+  +++  GYAA T  VL 
Sbjct: 487 SKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLF 546

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           DI EEEKE A+  HSEKLA+AFGLI+  E T I++ KNLR+C+DCHD  KLISKV++REI
Sbjct: 547 DIEEEEKEGAISLHSEKLALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREI 606

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           ++RDR RFH FK GACSC+DYW
Sbjct: 607 VMRDRNRFHHFKHGACSCRDYW 628



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 122/243 (50%), Gaps = 2/243 (0%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           ALS   ++  A  LF  +       +NA+L G     +   A+  + +M +       +T
Sbjct: 199 ALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVT 258

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
               L ACA++ AL   + +HS+V   G      LGT L+D+Y+K G +  + +VF+ M 
Sbjct: 259 LVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMR 318

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            R+I +W + ++GLA   +  E ++LFKRM+  G+ +PN VT +  L  C   G  +EG 
Sbjct: 319 ERNIYTWTSALSGLAMNGMGEECLELFKRMESAGM-EPNGVTFVAVLRGCSVAGLVEEGR 377

Query: 231 KIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
              + ++++ +++  +     ++D+Y + G LD A +  +++        W  ++ A  +
Sbjct: 378 ACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRI 437

Query: 290 HGD 292
           H +
Sbjct: 438 HNN 440


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 329/608 (54%), Gaps = 57/608 (9%)

Query: 21   HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYA-LSPLNELAYAHALFRQINAPSTNDFNAV 79
            H++ L AHL  +G+  S      S +  F A L+  N L+YA  +  Q  A +    NA 
Sbjct: 1226 HLRALHAHLVVSGRLASP-----SHLAAFLASLASSNHLSYARLVLPQRPA-TLLAHNAF 1279

Query: 80   LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK--------------ACARVLALF 125
            +R LA   +P  A   +R +       D  + +F ++                A V A  
Sbjct: 1280 IRALARGPRPCLAFAAFRDL---PLPPDHYSLNFLVRAATALVASAAEEKHVSAEVNARL 1336

Query: 126  ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS------------------------ 161
            + +  H   +R G  AD  + + +L +YA +G++ S                        
Sbjct: 1337 QAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALA 1396

Query: 162  -------AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
                   A+ +FD M  RD  +W+A+IAG      + EA+ LF  M   G     E T++
Sbjct: 1397 AGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTV-GEATLV 1455

Query: 215  GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
              L AC  +G    G  +H Y+R   + M++ +  A++DMY+KCG +  A EVF+++   
Sbjct: 1456 SVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESM-AE 1514

Query: 275  KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
            +++ TW + V   A++G G   L+LF++M  AG++P+ VS++A L  C+ AGLVD+G   
Sbjct: 1515 RNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRAC 1574

Query: 335  FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
            F+SM   GV P  +HYG +VDL GRAGRL +A   +  + M     +W  LL A +++  
Sbjct: 1575 FDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNS 1634

Query: 395  VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
            V++ + A  KL+ + S N    V LSN+YA  + W  V RVR  MK + VKKVPG+S IE
Sbjct: 1635 VDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIE 1694

Query: 455  VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYH 514
            V G +H+F+   + H ++ EI   L E+  +++  GY A T  VL DI EEEKE A+  H
Sbjct: 1695 VDGKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLH 1754

Query: 515  SEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
            SEKLA+AFGLI   E   I++ KNLR+C DCH  IKL+SKV+NREI++RDR RFH FK G
Sbjct: 1755 SEKLALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGG 1814

Query: 575  ACSCKDYW 582
             CSC+DYW
Sbjct: 1815 ECSCRDYW 1822


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/437 (44%), Positives = 274/437 (62%), Gaps = 3/437 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            T++  Y ++G+I  A+K FD M  RD  SW A+IAG AQ     EA+++F  +K +G  
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGE- 390

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
             N  T   AL+ C  + A + G +IH    +        V NA++ MY KCG +D+A +
Sbjct: 391 SLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEAND 450

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
            F+ I+  K +V+WNTM+  +A HG G +AL +FE M  AGVKPD+++ +  L AC+H G
Sbjct: 451 TFEGIE-EKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTG 509

Query: 327 LVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           L+D G   F SM  + GV P  KHY  ++DLLGRAGRL+EA D+++++        W  L
Sbjct: 510 LLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGAL 569

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGA +++G+ E+ E A+  + +M   N G +VLLSNLYAA  RW D  ++R  M++  V+
Sbjct: 570 LGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQ 629

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           KVPG+S++EV   IH F   D SH +   IY  L+E+  K++E GY + T  VLHD+ EE
Sbjct: 630 KVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEE 689

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE+ L YHSEKLAVAFG+++      I+V KNLR+C DCH  IK ISK+  R II+RD 
Sbjct: 690 EKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDS 749

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F +G CSC DYW
Sbjct: 750 HRFHHFNEGFCSCGDYW 766



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 11/256 (4%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           + ++A A   F  +       + A++ G A S     A+  + ++ +     +  T   A
Sbjct: 341 IGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCA 400

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L  CA + AL    QIH   ++ G+     +G  LL +Y K G I  A   F+ +  +D+
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDV 460

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWN ++AG A+     +A+ +F+ MK  GV KP+E+T++G L+AC H G    G    E
Sbjct: 461 VSWNTMLAGYARHGFGRQALTVFESMKTAGV-KPDEITMVGVLSACSHTGLLDRGT---E 516

Query: 235 YIREERLDMNVVVCNA----VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           Y      D  V+  +     +ID+  + G L++A ++  N+  +    +W  ++ A  +H
Sbjct: 517 YFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIH 576

Query: 291 GD---GPRALELFEQM 303
           G+   G +A E+  +M
Sbjct: 577 GNTELGEKAAEMVFKM 592



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 116/265 (43%), Gaps = 66/265 (24%)

Query: 324 HAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           + GL+D G   F  M     V P  KHY  ++DLLGR  RL+E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEGA--------------- 820

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
             LLGA +++G+ E+ E A++   +MG  N G             +  DVG         
Sbjct: 821 --LLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------ISKMRDVG--------- 858

Query: 443 DVKKVPGFSYIEVGGVIHKF----FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
            V+KVPG+S+ EV   IH F    F S +     RE    L+E+  K++E       +  
Sbjct: 859 -VQKVPGYSWFEVQNKIHTFSVGLFLSRE-----RENIGFLEELDLKMREREEEKERT-- 910

Query: 499 LHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN-LRICRDCHDVIKLISKVYN 557
                       L Y SE LA A G+++       +V K  + +C DC   IK +SK+  
Sbjct: 911 ------------LKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVG 958

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           R I +RD    HRF +  CSC +YW
Sbjct: 959 RLITLRDS---HRFNESICSCGEYW 980



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 14/210 (6%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +    L+  + +  ++  A+ +FD+M VRD  SWN +I+G AQG   S+A  LF    
Sbjct: 203 DLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESP 262

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
              VF     T    ++     G   E     + + E+    N V  NA+I  Y +   +
Sbjct: 263 TRDVF-----TWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKM 313

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           D A E+F+++ CR ++ +WNTM+  +   GD  +A + F+ M     + D VS+ A +  
Sbjct: 314 DIARELFESMPCR-NISSWNTMITGYGQIGDIAQARKFFDMM----PQRDCVSWAAIIAG 368

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
              +G  ++ + +F  +   G   N   +G
Sbjct: 369 YAQSGHYEEALNMFVEIKQDGESLNRATFG 398



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 115/263 (43%), Gaps = 33/263 (12%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           DA+   T++  YA+ G +  A+++FDE   RD+ +W A+++G  Q  +  EA   F  M 
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM-----------NVVVCNA 250
                + NEV+    +A                Y++ +++D+           N+   N 
Sbjct: 294 -----EKNEVSYNAMIAG---------------YVQTKKMDIARELFESMPCRNISSWNT 333

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           +I  Y + G + +A + FD +  ++  V+W  ++  +A  G    AL +F ++ + G   
Sbjct: 334 MITGYGQIGDIAQARKFFDMMP-QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL 392

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           +  ++  AL  C     ++ G ++       G         +++ +  + G + EA D  
Sbjct: 393 NRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTF 452

Query: 371 KSVSMGTDMVLWQTLLGACQLYG 393
           + +    D+V W T+L     +G
Sbjct: 453 EGIEE-KDVVSWNTMLAGYARHG 474



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 122/267 (45%), Gaps = 23/267 (8%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D      +L  Y +   +  A+++FD M  +D+ SWN+L++G AQ     EA ++F  M 
Sbjct: 110 DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP 169

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
                + N ++  G LAA  H G  +E   +     E + D +++  N ++  + +   L
Sbjct: 170 -----EKNSISWNGLLAAYVHNGRIEEACLLF----ESKSDWDLISWNCLMGGFVRKKKL 220

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
             A  +FD +  R + ++WNTM+  +A  G   +A  LF++        D  ++ A +  
Sbjct: 221 GDARWLFDKMPVRDA-ISWNTMISGYAQGGGLSQARRLFDE----SPTRDVFTWTAMVSG 275

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
               G++D+    F+ M     + N   Y +++    +  ++  A ++ +S+    ++  
Sbjct: 276 YVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARELFESMPC-RNISS 330

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEM 408
           W T++      GD+  A    RK  +M
Sbjct: 331 WNTMITGYGQIGDIAQA----RKFFDM 353



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 10/161 (6%)

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
            D L     +  + + G   SA  VF+ M  R   S+NA+I+G  + +  + A +LF +M
Sbjct: 47  PDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM 106

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
               +F  N V + G +  C  LG   +  ++ + + E+    +VV  N+++  YA+ G 
Sbjct: 107 PERDLFSWN-VMLTGYVRNC-RLG---DARRLFDLMPEK----DVVSWNSLLSGYAQNGY 157

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           +D+A EVFDN+   K+ ++WN ++ A+  +G    A  LFE
Sbjct: 158 VDEAREVFDNMP-EKNSISWNGLLAAYVHNGRIEEACLLFE 197


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/585 (36%), Positives = 337/585 (57%), Gaps = 12/585 (2%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           +N   +L+ C  + AV     +QL A L  +G     +   R  +++ YA      ++ A
Sbjct: 69  SNYATILRSCVLSRAVRPG--RQLHARLLVSGTGLDAVLATR--LVDLYA--SCGHVSLA 122

Query: 62  HALFRQI-NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACA 119
             +F ++ N  +   +N ++R  A       A+  YR ML  GS + D  T    LKACA
Sbjct: 123 RRVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACA 182

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            +L L    ++H  V+R  +  D  + T L+D+YAK G +  A  VF++  +RD A WN+
Sbjct: 183 ALLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNS 242

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +IA   Q    +EA+ L + M  EG+  P   T++ A++A     A   G ++H Y    
Sbjct: 243 MIAACGQNGRPAEALTLCRNMAAEGI-APTIATLVSAISAAAVASALPRGRELHGYGWRR 301

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
                  +  +++DMYAK G +  A  +F+ +  R+ L++WN M+  F +HG    A EL
Sbjct: 302 GFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRE-LISWNAMICGFGMHGHADHAFEL 360

Query: 300 FEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLL 357
           F +M   A V PD ++++  L ACNH G+V +   +F+ M     +KP ++HY  +VD+L
Sbjct: 361 FSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVL 420

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           G +GR +EA D++K + +  D  +W  LL  C+++ +VE+AE+A +KL+E+   + G++V
Sbjct: 421 GHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYV 480

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YA   +W++  RVRK M NR +KK+   S+IE+ G  H F   D SH +  +IYE
Sbjct: 481 LLSNIYAESGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYE 540

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
           +L+ +   I + GY   T+ V H++ ++EK N +  HSE+LA+AFGLIST   T + V K
Sbjct: 541 ELERLEGLISQTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTK 600

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+C DCH VIKLIS++  REII+RD  R+H F +G CSCKD+W
Sbjct: 601 NLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/547 (39%), Positives = 317/547 (57%), Gaps = 9/547 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V S +I  Y      E+  A   F +        + A++   AH+ + + A+   R+M  
Sbjct: 170 VESSLITMYG--RCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDL 227

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF-LADALLGTTLLDVYAKVGEIV 160
              +    T    L ACA  + L   +  H      G   +  ++  TL+++Y K G + 
Sbjct: 228 EGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVD 287

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
            A++V D M VR   SW A+IA  AQ   A+EA++LF+ M +EG  +P+++T++  + +C
Sbjct: 288 DARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGA-EPSDITLISVVDSC 346

Query: 221 GHLGAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLV 278
             LG    G +IH  IR       ++++ NAVI MY KCG L+ A EVF+ +  R +S+V
Sbjct: 347 AVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVV 406

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           TW  M+ A+A +G G  A+ELF++M    G +P+ V++L+ LCAC+H G ++     F S
Sbjct: 407 TWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCS 466

Query: 338 MA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIV-KSVSMGTDMVLWQTLLGACQLYGDV 395
           M  + GV P   HY  +VDLLGRAGRL EA  ++ +      D+V W   L ACQ+ GD+
Sbjct: 467 MGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDL 526

Query: 396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEV 455
           E ++ A++++ E+   N    VLLSN+YAA  R  DV R+R  MK+  VKK  G S+IE+
Sbjct: 527 ERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEI 586

Query: 456 GGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHS 515
              +H+F  SD SH +  EIY +L+ +  +IKE GY   T  VL D+ EE+K   L YHS
Sbjct: 587 NNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHS 646

Query: 516 EKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGA 575
           E+LA+A G+IST   T+++V KNLR+C DCH   K IS++  R+IIVRD  RFH FKDG 
Sbjct: 647 ERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGV 706

Query: 576 CSCKDYW 582
           CSC DYW
Sbjct: 707 CSCGDYW 713



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 177/375 (47%), Gaps = 28/375 (7%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           A S    L  A   F +I   + + +N ++   A +  P  A   +  M     R +A+T
Sbjct: 76  AYSKHGSLHGAQLAFGRITLHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVT 135

Query: 111 CSFALKAC--ARVLAL---------FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
            S AL AC  AR LAL          E L+I SHV            ++L+ +Y +  EI
Sbjct: 136 LSTALLACTAARNLALGRKLNELIASEALEIDSHV-----------ESSLITMYGRCREI 184

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
             A++ FD    +D+  W A+I+  A     S A++L +RM +EG+ K    T +  L A
Sbjct: 185 EEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGI-KLGLPTYVSLLDA 243

Query: 220 CGHLGAWKEGDKIHEYIREERLDM-NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           C      + G   H+      LD  + VV   ++++Y KCG +D A  V D +  R S V
Sbjct: 244 CASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTS-V 302

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W  M+ A+A +G+   A+ LF+ M   G +P D++ ++ + +C   G +  G R+   +
Sbjct: 303 SWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARI 362

Query: 339 -ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQLYGDVE 396
            ++     ++    +V+ + G+ G L+ A ++ + V + T  +V W  ++ A    G  E
Sbjct: 363 RSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGE 422

Query: 397 MA-EIASRKLVEMGS 410
            A E+    L++ G+
Sbjct: 423 EAIELFQEMLIDGGT 437



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 138/276 (50%), Gaps = 4/276 (1%)

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L E  ++H+ +       +  LG  L+D Y+K G +  A+  F  + + +  SWN L+A 
Sbjct: 48  LDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAA 107

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            AQ      A  LF  M  +GV +PN VT+  AL AC        G K++E I  E L++
Sbjct: 108 YAQNGHPRGAATLFHWMCSQGV-RPNAVTLSTALLACTAARNLALGRKLNELIASEALEI 166

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           +  V +++I MY +C  +++A   FD     K +V W  M+ A+A +    RALEL  +M
Sbjct: 167 DSHVESSLITMYGRCREIEEAERAFDRSP-EKDVVCWTAMISAYAHNWRTSRALELVRRM 225

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV-KPNMKHYGSVVDLLGRAGR 362
              G+K    +Y++ L AC     + +GV      A  G+ + +    G++V+L G+ GR
Sbjct: 226 DLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGR 285

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           + +A  ++ ++ + T  V W  ++ A    G+   A
Sbjct: 286 VDDARRVLDAMPVRTS-VSWTAMIAAYAQNGNAAEA 320


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/543 (36%), Positives = 318/543 (58%), Gaps = 6/543 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +++FY  S  + +  A  LF ++       +N ++   A + +   ++  ++++  
Sbjct: 336 VANALLDFY--SKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQF 393

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                     +  L   A  L L    QIHS  +    +++ L+G +L+D+YAK GE   
Sbjct: 394 TGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGE 453

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A ++F ++ ++    W A+I+   Q  L  + + LF  M+   +   +  T    + AC 
Sbjct: 454 ANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKI-GADAATYASIVRACA 512

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L +   G ++H +I       NV   +A++DMYAKCG +  A ++F  +  R S V+WN
Sbjct: 513 SLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNS-VSWN 571

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            ++ A+A +GDG   L LFE+M R+G++PD VS L+ LCAC+H GLV++G++ F+SM   
Sbjct: 572 ALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRI 631

Query: 342 -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + P  +HY S +D+L R GR  EA  ++  +    D ++W ++L +C ++ + E+A+ 
Sbjct: 632 YKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKK 691

Query: 401 ASRKLVEMGS-NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
           A+ +L  M    +   +V +SN+YAA   WD+VG+V+KAM+ R VKKVP +S++E+    
Sbjct: 692 AANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKT 751

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H F  +DK+H + REI +KLDE+  K+ + GY   +SC LH++ EE K  +L YHSE++A
Sbjct: 752 HVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIA 811

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +AF LIST E + I V KNLR C DCH  IK+ISK+  REI VRD  RFH F+DG C+C+
Sbjct: 812 IAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCR 871

Query: 580 DYW 582
           DYW
Sbjct: 872 DYW 874



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 159/331 (48%), Gaps = 3/331 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L+ A  LF  +   +   +  ++ G A +++   A   + +M R     D ++ +  L  
Sbjct: 148 LSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSG 207

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
                ++ E  Q+HSHV++ G+ +  ++  +LLD Y K   +  A ++F+++  RD  ++
Sbjct: 208 FTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTF 267

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NAL+ G ++     EA++LF +M+  G ++P E T    L A   L   + G ++H ++ 
Sbjct: 268 NALLTGYSKEGFNREAINLFFKMQEVG-YRPTEFTFAAILTAGIQLDDIEFGQQVHGFVV 326

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +     NV V NA++D Y+K   + +A ++F  +      +++N +V  +A +G    +L
Sbjct: 327 KCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMP-EVDGISYNVLVTCYAWNGRVKESL 385

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           ELF+++   G    +  +   L     +  +D G ++ +          +    S+VD+ 
Sbjct: 386 ELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMY 445

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            + G   EA  I   +++ +  V W  ++ +
Sbjct: 446 AKCGEFGEANRIFSDLAIQSS-VPWTAMISS 475



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 2/222 (0%)

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
           T++  Y K G +  A+ +FD M  R   +W  LI G AQ N   EA  LF  M   G+  
Sbjct: 137 TMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGI-D 195

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           P+ V++   L+      +  E  ++H ++ +   D  +VV N+++D Y K   L  AF++
Sbjct: 196 PDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQL 255

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           F++I  R S VT+N ++  ++  G    A+ LF +M   G +P + ++ A L A      
Sbjct: 256 FNDIPERDS-VTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDD 314

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           ++ G ++   +  C    N+    +++D   +  R+ EA  +
Sbjct: 315 IEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKL 356


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 334/578 (57%), Gaps = 9/578 (1%)

Query: 6    ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            ++L+ CSS  AV     +Q+   +  TG FQ  ++ V S +I+ YA   L +L +A  +F
Sbjct: 478  SILRTCSSLRAVDLG--EQIHTQVLKTG-FQFNVY-VSSVLIDMYA--KLGKLDHALKIF 531

Query: 66   RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            R++       + A++ G A   K   A+  +++M      SD +  + A+ ACA + AL 
Sbjct: 532  RRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALN 591

Query: 126  ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
            +  QIH+     G+  D  +G  L+ +YA+ G++  A   FD++  +D  SWN+LI+G A
Sbjct: 592  QGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFA 651

Query: 186  QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
            Q     EA+ LF +M   G  + N  T   A++A  ++   K G +IH  I +   D   
Sbjct: 652  QSGHCEEALSLFSQMSKAGQ-EINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSET 710

Query: 246  VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
             V N +I +YAKCG +D A   F  +   K+ ++WN M+  ++ HG G +AL LFE M +
Sbjct: 711  EVSNVLITLYAKCGNIDDAERQFFEMP-EKNEISWNAMLTGYSQHGHGFKALSLFEDMKQ 769

Query: 306  AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQ 364
             GV P+ V+++  L AC+H GLVD+G++ F SM    G+ P  +HY  VVDLLGR+G L 
Sbjct: 770  LGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLS 829

Query: 365  EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
             A   V+ + +  D ++ +TLL AC ++ ++++ E A+  L+E+   +   +VLLSN+YA
Sbjct: 830  RARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYA 889

Query: 425  AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
               +W    R R+ MK+R VKK PG S+IEV   +H FF  D+ H    +IYE L ++  
Sbjct: 890  VTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNE 949

Query: 485  KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
               E GY   T+ +L+D    +K      HSEKLA+AFGL+S S +T I VFKNLR+C D
Sbjct: 950  LAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGD 1009

Query: 545  CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            CH+ IK +SK+ +R I+VRD  RFH FK G CSCKDYW
Sbjct: 1010 CHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 167/346 (48%), Gaps = 3/346 (0%)

Query: 53  SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           S L     A  +F  +       +N+++ GL+       A+  +++M     + D +T +
Sbjct: 317 SRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVA 376

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
             L AC+ V AL    Q HS+ ++ G  +D +L   LLD+Y K  +I +A + F      
Sbjct: 377 SLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE 436

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           ++  WN ++      +  +E+  +F +M+MEG+ +PN+ T    L  C  L A   G++I
Sbjct: 437 NVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGI-EPNQFTYPSILRTCSSLRAVDLGEQI 495

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H  + +     NV V + +IDMYAK G LD A ++F  +K  K +V+W  M+  +A H  
Sbjct: 496 HTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQHEK 554

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
              AL LF++M   G+  D++ + +A+ AC     ++ G ++       G   ++    +
Sbjct: 555 FAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNA 614

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           +V L  R G++++A      +    D + W +L+      G  E A
Sbjct: 615 LVSLYARCGKVRDAYFAFDKI-FSKDNISWNSLISGFAQSGHCEEA 659



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 168/335 (50%), Gaps = 4/335 (1%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
             +L  A  +F ++     + +N VL            +  +R+ML+   + D  T +  
Sbjct: 116 FGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGV 175

Query: 115 LKACARVLALFETLQ-IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           L+ C      F  ++ IH+  + HG+     +   L+D+Y K G + SAKKVFD +  RD
Sbjct: 176 LRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRD 235

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
             SW A+++GL+Q     EAV LF +M   GV+ P        L+AC  +  +K G+++H
Sbjct: 236 SVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVY-PTPYIFSSVLSACTKVEFYKVGEQLH 294

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
             + ++   +   VCNA++ +Y++ G    A +VF N   ++  V++N+++   +  G  
Sbjct: 295 GLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVF-NAMLQRDEVSYNSLISGLSQQGYS 353

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
            +ALELF++M    +KPD V+  + L AC+  G +  G +  +     G+  ++   G++
Sbjct: 354 DKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGAL 413

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +DL  +   ++ A +   S     ++VLW  +L A
Sbjct: 414 LDLYVKCSDIKTAHEFFLSTET-ENVVLWNVMLVA 447



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 156/310 (50%), Gaps = 8/310 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL  CSS GA+  +  KQ  ++    G   S    +   +++ Y     +++  AH  F
Sbjct: 377 SLLSACSSVGAL--LVGKQFHSYAIKAGM--SSDIILEGALLDLYV--KCSDIKTAHEFF 430

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
                 +   +N +L           +   + QM       +  T    L+ C+ + A+ 
Sbjct: 431 LSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVD 490

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              QIH+ VL+ GF  +  + + L+D+YAK+G++  A K+F  +  +D+ SW A+IAG A
Sbjct: 491 LGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYA 550

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q    +EA++LFK M+ +G+   N +    A++AC  + A  +G +IH          ++
Sbjct: 551 QHEKFAEALNLFKEMQDQGIHSDN-IGFASAISACAGIQALNQGQQIHAQACVSGYSDDL 609

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            V NA++ +YA+CG +  A+  FD I  + + ++WN+++  FA  G    AL LF QM +
Sbjct: 610 SVGNALVSLYARCGKVRDAYFAFDKIFSKDN-ISWNSLISGFAQSGHCEEALSLFSQMSK 668

Query: 306 AGVKPDDVSY 315
           AG + +  ++
Sbjct: 669 AGQEINSFTF 678



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 137/290 (47%), Gaps = 4/290 (1%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           R+++ T  + L  C       +  ++H  +L+ GF A+ +L   L+D+Y   G++  A  
Sbjct: 65  RANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVT 124

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VFDEM VR ++ WN ++     G +A   + LF+RM  E V KP+E T  G L  CG   
Sbjct: 125 VFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKV-KPDERTYAGVLRGCGGGD 183

Query: 225 -AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
             +   +KIH        + ++ VCN +ID+Y K G L+ A +VFD ++ R S V+W  M
Sbjct: 184 VPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDS-VSWVAM 242

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +   +  G    A+ LF QM  +GV P    + + L AC        G +L   +   G 
Sbjct: 243 LSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGF 302

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
                   ++V L  R G    A  +  ++ +  D V + +L+      G
Sbjct: 303 SLETYVCNALVTLYSRLGNFIPAEQVFNAM-LQRDEVSYNSLISGLSQQG 351


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/442 (40%), Positives = 293/442 (66%), Gaps = 3/442 (0%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +   T++  YA  GE+  A++VF+ M  RD  SW+++++   +G  + +A++L++ M+
Sbjct: 136 DMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMR 195

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
              V  P+  T++  L+AC  +GA   G ++H+++    ++++V +  A+IDMYAKCG +
Sbjct: 196 AACV-NPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDI 254

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           + +  VF ++   K ++TW++M++  A HG G  AL LF +M   G++P++V+++  L +
Sbjct: 255 ENSVRVFHSMPV-KDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLIS 313

Query: 322 CNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C H GLV DG + F+SM+   GV P ++HYG +VDLLGR+G ++EA  +++ +    D V
Sbjct: 314 CTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAV 373

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +W+ LLGAC++Y +VE+AE A  KL  +  +  G +VLLSN+YA    W+ V  +R+ ++
Sbjct: 374 IWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLR 433

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
              ++++PG S IE    IH+F + D+SH + +EIY+ L E+M ++++ GY   T  VL 
Sbjct: 434 RERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQ 493

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           DI E+ KE AL  HSEKLAVAFGL++T   +++++ KNLR C DCH  IKLI+ +Y R++
Sbjct: 494 DIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYERKL 553

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           I+RDR RFH F +G CSCKDYW
Sbjct: 554 IIRDRNRFHHFSEGRCSCKDYW 575



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 125/246 (50%), Gaps = 4/246 (1%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +I  YA++   E+  A  +F  ++      +++++       +  +A+  +R+M      
Sbjct: 143 MIHGYAVN--GEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVN 200

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            D  T    L AC+ + AL    ++H  V  +G   D  LGT L+D+YAK G+I ++ +V
Sbjct: 201 PDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRV 260

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           F  M V+D+ +W+++I GLA      +A+ LF RM  EG+ +PNEVT +G L +C HLG 
Sbjct: 261 FHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGL-QPNEVTFIGVLISCTHLGL 319

Query: 226 WKEGDKIHEYIR-EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
             +G K    +     +   V     ++D+  + G +++A ++  ++      V W  ++
Sbjct: 320 VSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALL 379

Query: 285 MAFAVH 290
            A  ++
Sbjct: 380 GACRIY 385


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/565 (38%), Positives = 312/565 (55%), Gaps = 28/565 (4%)

Query: 45  KIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH 104
           +++ F A  P +   YA  L      P    FN +   L          L     LR  H
Sbjct: 42  RLLSFLARDPDSHFPYASRLLAHHPDPHPALFNPLFSALPTRHAARLLALMLSLPLRPDH 101

Query: 105 RS--DALTCSFALKACARVLALFETLQIHSH----------------------VLRHGFL 140
            +    L  +  L   A++ AL   L  H+H                      V R G  
Sbjct: 102 FTFPQILPSAQPLHLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRVFRGGGG 161

Query: 141 A-DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
           A D +  TT++    K+G    A+ +FD M  R++ SWNA+++G  +     +A+++F  
Sbjct: 162 ALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDE 221

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+  GV   N      A+ AC   GA   G ++H ++ +  + M+  +  AV+DMY KCG
Sbjct: 222 MRARGV-DGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCG 280

Query: 260 LLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
            +++A+ VF+ +    K L TWN M+  FAVHG G  AL+LF +M R GV PDDV+ +  
Sbjct: 281 CVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNV 340

Query: 319 LCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           L AC HAG++ +G   FN +    G++P M+HYG +VDL GRAGRL+EA  +++ + M  
Sbjct: 341 LTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEP 400

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
           D+ +   L GA +++GDV++ E    +++E+   N G +VLL+NL A   RW+DV RVR+
Sbjct: 401 DVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRR 460

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            M  R+V K  G S IEV G + +F      H +  E+Y    ++M KI+  GY   T  
Sbjct: 461 LMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVPDTRD 520

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           VLH I EEEKE  L YHSEKLA+AFGL+ T    ++++ KNLR+CRDCH+  K +S+V+ 
Sbjct: 521 VLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFE 580

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           R+I+VRDR RFH FKDG CSCKDYW
Sbjct: 581 RQIVVRDRNRFHHFKDGQCSCKDYW 605


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/437 (44%), Positives = 274/437 (62%), Gaps = 3/437 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            T++  Y ++G+I  A+K FD M  RD  SW A+IAG AQ     EA+++F  +K +G  
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGE- 390

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
             N  T   AL+ C  + A + G +IH    +        V NA++ MY KCG +D+A +
Sbjct: 391 SLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEAND 450

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
            F+ I+  K +V+WNTM+  +A HG G +AL +FE M  AGVKPD+++ +  L AC+H G
Sbjct: 451 TFEGIE-EKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTG 509

Query: 327 LVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           L+D G   F SM  + GV P  KHY  ++DLLGRAGRL+EA D+++++        W  L
Sbjct: 510 LLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGAL 569

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGA +++G+ E+ E A+  + +M   N G +VLLSNLYAA  RW D  ++R  M++  V+
Sbjct: 570 LGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQ 629

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           KVPG+S++EV   IH F   D SH +   IY  L+E+  K++E GY + T  VLHD+ EE
Sbjct: 630 KVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEE 689

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE+ L YHSEKLAVAFG+++      I+V KNLR+C DCH  IK ISK+  R II+RD 
Sbjct: 690 EKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDS 749

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F +G CSC DYW
Sbjct: 750 HRFHHFNEGFCSCGDYW 766



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 11/256 (4%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           + ++A A   F  +       + A++ G A S     A+  + ++ +     +  T   A
Sbjct: 341 IGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCA 400

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L  CA + AL    QIH   ++ G+     +G  LL +Y K G I  A   F+ +  +D+
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDV 460

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWN ++AG A+     +A+ +F+ MK  GV KP+E+T++G L+AC H G    G    E
Sbjct: 461 VSWNTMLAGYARHGFGRQALTVFESMKTAGV-KPDEITMVGVLSACSHTGLLDRGT---E 516

Query: 235 YIREERLDMNVVVCNA----VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           Y      D  V+  +     +ID+  + G L++A ++  N+  +    +W  ++ A  +H
Sbjct: 517 YFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIH 576

Query: 291 GD---GPRALELFEQM 303
           G+   G +A E+  +M
Sbjct: 577 GNTELGEKAAEMVFKM 592



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 115/263 (43%), Gaps = 33/263 (12%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           DA+   T++  YA+ G +  A+++FDE   RD+ +W A+++G  Q  +  EA   F  M 
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM-----------NVVVCNA 250
                + NEV+    +A                Y++ +++D+           N+   N 
Sbjct: 294 -----EKNEVSYNAMIAG---------------YVQTKKMDIARELFESMPCRNISSWNT 333

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           +I  Y + G + +A + FD +  ++  V+W  ++  +A  G    AL +F ++ + G   
Sbjct: 334 MITGYGQIGDIAQARKFFDMMP-QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL 392

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           +  ++  AL  C     ++ G ++       G         +++ +  + G + EA D  
Sbjct: 393 NRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTF 452

Query: 371 KSVSMGTDMVLWQTLLGACQLYG 393
           + +    D+V W T+L     +G
Sbjct: 453 EGIEE-KDVVSWNTMLAGYARHG 474



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 14/210 (6%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +    L+  + +  ++  A+ +FD+M VRD  SWN +I+G AQG   S+A  LF    
Sbjct: 203 DLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESP 262

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
              VF     T    ++     G   E     + + E+    N V  NA+I  Y +   +
Sbjct: 263 TRDVF-----TWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKM 313

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           D A E+F+++ CR ++ +WNTM+  +   GD  +A + F+ M     + D VS+ A +  
Sbjct: 314 DIARELFESMPCR-NISSWNTMITGYGQIGDIAQARKFFDMM----PQRDCVSWAAIIAG 368

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
              +G  ++ + +F  +   G   N   +G
Sbjct: 369 YAQSGHYEEALNMFVEIKQDGESLNRATFG 398



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 123/269 (45%), Gaps = 27/269 (10%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D      +L  Y +   +  A+++FD M  +D+ SWN+L++G AQ     EA ++F  M 
Sbjct: 110 DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP 169

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE--YIREERLDMNVVVCNAVIDMYAKCG 259
                + N ++  G LAA  H G      +I E   + E + D +++  N ++  + +  
Sbjct: 170 -----EKNSISWNGLLAAYVHNG------RIEEACLLFESKSDWDLISWNCLMGGFVRKK 218

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            L  A  +FD +  R + ++WNTM+  +A  G   +A  LF++        D  ++ A +
Sbjct: 219 KLGDARWLFDKMPVRDA-ISWNTMISGYAQGGGLSQARRLFDE----SPTRDVFTWTAMV 273

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
                 G++D+    F+ M     + N   Y +++    +  ++  A ++ +S+    ++
Sbjct: 274 SGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARELFESMPC-RNI 328

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEM 408
             W T++      GD+  A    RK  +M
Sbjct: 329 SSWNTMITGYGQIGDIAQA----RKFFDM 353



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 10/161 (6%)

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
            D L     +  + + G   SA  VF+ M  R   S+NA+I+G  + +  + A +LF +M
Sbjct: 47  PDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM 106

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
               +F  N V + G +  C  LG   +  ++ + + E+    +VV  N+++  YA+ G 
Sbjct: 107 PERDLFSWN-VMLTGYVRNC-RLG---DARRLFDLMPEK----DVVSWNSLLSGYAQNGY 157

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           +D+A EVFDN+   K+ ++WN ++ A+  +G    A  LFE
Sbjct: 158 VDEAREVFDNMP-EKNSISWNGLLAAYVHNGRIEEACLLFE 197


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/516 (40%), Positives = 320/516 (62%), Gaps = 5/516 (0%)

Query: 70  APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ 129
           AP +  F ++ R  A    P  A+ +YR +L  +    +   +   KACA + A+   + 
Sbjct: 67  APDSFLFCSLTRATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADLSAIRAGMG 126

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           IH+H +  G  ++  + T+L+ +Y+K G++  A+K+FD +  + + +WNA+I+G  Q  L
Sbjct: 127 IHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQNGL 186

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
           A  A+++++ M+M G   P+  T +  L+AC   GA   G ++ + I  ER++MNVV+  
Sbjct: 187 AGRAIEVYREMQMAGE-APDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVVLGA 245

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           A+++MYA+CGL++KA E F+ ++  +++VTW +M+  + +HG G  A++LF  M + G  
Sbjct: 246 ALVNMYARCGLVNKAREWFNMLQ-ERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPP 304

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACD 368
           P+DV+++A L AC HAGLV +G   F SM +  G+ P ++HY S+VD+ GRAG L +A  
Sbjct: 305 PNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLDDAMR 364

Query: 369 IVK-SVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
            +  S+       +W  +LGAC+++ D  +    + +L+ +   +    VLLSNLYA   
Sbjct: 365 FIHDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLIALEPESPSHRVLLSNLYALSG 424

Query: 428 RWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487
           + + V +VR  M  R +KK  G+S IE+ GV H F   +KSH K  EIY+ L++++ KI 
Sbjct: 425 KMNHVEKVRDTMIKRRLKKPIGYSLIEIAGVAHLFRMGEKSHPKTSEIYQYLEKLIEKIT 484

Query: 488 EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS-IQVFKNLRICRDCH 546
           + GY   T  VLH++ EEE+E AL YH EKLAVAFGL+ TS  T+ I++ KNLRIC DCH
Sbjct: 485 DVGYVPKTDSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCTTPIRIIKNLRICEDCH 544

Query: 547 DVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             IK +S V NREIIVRD  RFH FK G CSC++YW
Sbjct: 545 LAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 580


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/520 (36%), Positives = 311/520 (59%), Gaps = 3/520 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF ++    +  + +++ G   +    +A+  +R+M   + + D  T    L AC  V+A
Sbjct: 231 LFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMA 290

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L E  Q+H++++R  +  +  + + L+D+Y K   I SA+ VF +M  +++ SW A++ G
Sbjct: 291 LQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVG 350

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q   + EAV  F  M+  G+ +P++ T+   +++C +L + +EG + H       L  
Sbjct: 351 YGQNGYSEEAVKTFSDMQKYGI-EPDDFTLGSVISSCANLASLEEGAQFHARALTSGLIS 409

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            + V NA++ +Y KCG ++ +  +F+ I   K  VTW  +V  +A  G     + LFE M
Sbjct: 410 FITVSNALVTLYGKCGSIEDSHRLFNEISF-KDEVTWTALVSGYAQFGKANETIGLFESM 468

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGR 362
              G+KPD V+++  L AC+ AGLV+ G ++F SM N  G+ P   HY  ++DL  RAGR
Sbjct: 469 LAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGR 528

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           ++EA + +  +    D + W TLL +C+ YG++++ + A+  L+E+  +N   +VLLS++
Sbjct: 529 IEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSV 588

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YAA  +W++V R+RK M+++ ++K PG S+I+    +H F   DKS+    +IY +L+++
Sbjct: 589 YAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKL 648

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
            +K+ + GY    + VLHD+G+ EK   L +HSEKLA+AFGL+       I+V KNLR+C
Sbjct: 649 NYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVC 708

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH+  K ISK+ NREI+VRD  RFH FKDG CSC D+W
Sbjct: 709 SDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 36/376 (9%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR--GSHRSDA 108
           A S L  ++    LF  +       +N+++ G A       +V  Y  ML+  GS   + 
Sbjct: 84  AYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNR 143

Query: 109 LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE 168
           +T S  L   ++   +    QIH HV++ GF++   +G+ L+D+Y+K+G I  A+KVFDE
Sbjct: 144 ITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDE 203

Query: 169 -------------MGV------------------RDIASWNALIAGLAQGNLASEAVDLF 197
                        MG+                  RD  SW ++I G  Q  L  +A+D+F
Sbjct: 204 LPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIF 263

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
           + MK+E + + ++ T    L ACG + A +EG ++H YI       N+ V +A++DMY K
Sbjct: 264 REMKLENL-QMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCK 322

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           C  +  A  VF  + C K++V+W  M++ +  +G    A++ F  M + G++PDD +  +
Sbjct: 323 CKNIKSAEAVFKKMTC-KNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGS 381

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            + +C +   +++G +        G+   +    ++V L G+ G ++++  +   +S   
Sbjct: 382 VISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISF-K 440

Query: 378 DMVLWQTLLGACQLYG 393
           D V W  L+     +G
Sbjct: 441 DEVTWTALVSGYAQFG 456



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 139/273 (50%), Gaps = 10/273 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ A++  T  ++  +F V S +++ Y       +  A A+F+++   +   + A+L G
Sbjct: 295 KQVHAYIIRT-DYKDNIF-VASALVDMYC--KCKNIKSAEAVFKKMTCKNVVSWTAMLVG 350

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              +     AV  +  M +     D  T    + +CA + +L E  Q H+  L  G ++ 
Sbjct: 351 YGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISF 410

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +   L+ +Y K G I  + ++F+E+  +D  +W AL++G AQ   A+E + LF+ M  
Sbjct: 411 ITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLA 470

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV---VVCNAVIDMYAKCG 259
            G+ KP++VT +G L+AC   G  ++G++I E +  E   + +     C  +ID++++ G
Sbjct: 471 HGL-KPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTC--MIDLFSRAG 527

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            +++A    + +      ++W T++ +   +G+
Sbjct: 528 RIEEARNFINKMPFSPDAISWATLLSSCRFYGN 560



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 122/284 (42%), Gaps = 37/284 (13%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE------ 168
           LK C       +   +HSH+++     +  L   L+  YAK+G I  A KVFD+      
Sbjct: 16  LKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNL 75

Query: 169 -------------------------MGVRDIASWNALIAGLAQGNLASEAVDLFKRM-KM 202
                                    M  RD  SWN+LI+G A   L  ++V  +  M K 
Sbjct: 76  YSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKN 135

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           +G F  N +T    L      G  K G +IH ++ +      V V + ++DMY+K G++ 
Sbjct: 136 DGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMIS 195

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A +VFD +   K++V +NT++M     G    +  LF +M       D +S+ + +   
Sbjct: 196 CARKVFDELP-EKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRER----DSISWTSMITGF 250

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
              GL  D + +F  M    ++ +   +GSV+   G    LQE 
Sbjct: 251 TQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEG 294


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/539 (37%), Positives = 310/539 (57%), Gaps = 33/539 (6%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA-LFETLQIHSHV 134
           +NA++ G     +   A   +  M R       +T    L AC +    +   +Q+H  V
Sbjct: 112 WNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRV 171

Query: 135 LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194
           +  G L D  +   L+D+YA+  ++ SA K+FD M VR + SW +L++GL +     EA 
Sbjct: 172 VGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEAR 231

Query: 195 DLFKRMK----------MEGVFKP--------------------NEVTVLGALAACGHLG 224
           DLF RM           ++G  +                     +E T++  + AC  LG
Sbjct: 232 DLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLG 291

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A + G+ +  Y+  + + M+  V NA+IDMY+KCG +++A +VF ++  R    TW  ++
Sbjct: 292 ALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKF-TWTAII 350

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GV 343
           +  AV+G G  A+E+F +M      PD+V+++  L AC HAGLVD G   F SM     +
Sbjct: 351 LGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNI 410

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
            PN+ HYG ++DL GRAG++ EA D +  + M  +  +W TLL AC+++G+ E+ E+ + 
Sbjct: 411 APNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTE 470

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
           +L++M   N   + LLSN+YA   RW+DV R+R  +  + +KK PG S IE+ G+IH+F 
Sbjct: 471 RLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFV 530

Query: 464 TSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFG 523
             D+SH   +EIY KL+ I+  +   GY    + V  ++ EEEK+  L +HSEKLA+AF 
Sbjct: 531 AGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFA 590

Query: 524 LISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           L+S+   T I++ KNLR+C DCH+ IKLIS++Y RE++VRDR RFH F+ G CSCKDYW
Sbjct: 591 LLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 4/244 (1%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
            L+ L  +  A  LF ++    T  + A++ G   +++   A+  +R+M   +  +D  T
Sbjct: 220 GLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFT 279

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
               + ACA++ AL     +  ++ R G   DA +G  L+D+Y+K G I  A  VF +M 
Sbjct: 280 MVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMH 339

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK-PNEVTVLGALAACGHLGAWKEG 229
            RD  +W A+I GLA      EA+++F RM   GV + P+EVT +G L AC H G   +G
Sbjct: 340 HRDKFTWTAIILGLAVNGYGEEAIEMFHRMI--GVSETPDEVTFIGVLTACTHAGLVDKG 397

Query: 230 DKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
            +    +RE   +  NVV    +ID++ + G + +A +  D +    +   W T++ A  
Sbjct: 398 REFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACR 457

Query: 289 VHGD 292
           VHG+
Sbjct: 458 VHGN 461



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 152/341 (44%), Gaps = 35/341 (10%)

Query: 91  NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150
           +AV  Y +ML      DA T    LKA AR  +      +H+HV++ G   +A + T+L+
Sbjct: 26  DAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLV 85

Query: 151 DVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE 210
             YA  G+  +A+ +  E        WNALI+G  +     EA   F  M   G   P  
Sbjct: 86  TAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGA-APTP 144

Query: 211 VTVLGALAACGH-LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
           VT +  L+ACG   G    G ++H  +    +  ++ V NA++DMYA+C  ++ A+++FD
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFD 204

Query: 270 NIKCR------------------------------KSLVTWNTMVMAFAVHGDGPRALEL 299
            ++ R                              +  V+W  M+  +        ALE+
Sbjct: 205 GMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEM 264

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           F +M  + V  D+ + ++ + AC   G ++ G  +   M+  G+K +     +++D+  +
Sbjct: 265 FREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSK 324

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLG-ACQLYGD--VEM 397
            G ++ A D+ K +           +LG A   YG+  +EM
Sbjct: 325 CGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEM 365


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/486 (39%), Positives = 305/486 (62%), Gaps = 3/486 (0%)

Query: 98  QMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157
           +M++   + D++T    L    ++  L    ++H  + + GF ++ ++  TL+D+YAK G
Sbjct: 406 KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCG 465

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
           E+  + KVF+ M  RDI +WN +IA        +  + +  RM+ EGV  P+  T+L  L
Sbjct: 466 EMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGV-TPDMATMLSIL 524

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
             C  L A ++G +IH  I +  L+ +V V N +I+MY+KCG L  +F+VF  +K  K +
Sbjct: 525 PVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKT-KDV 583

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           VTW  ++ A  ++G+G +A+  F +M  AG+ PD V+++A + AC+H+GLV++G+  F+ 
Sbjct: 584 VTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHR 643

Query: 338 MA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
           M  +  ++P ++HY  VVDLL R+  L +A D + S+ +  D  +W  LL AC++ GD E
Sbjct: 644 MKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTE 703

Query: 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
           +AE  S +++E+  ++ G +VL+SN+YAA  +WD V  +RK++K R +KK PG S++E+ 
Sbjct: 704 IAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQ 763

Query: 457 GVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSE 516
             ++ F T  K   ++ E+ + L  +   + + GY A    VLHDI E+EK + LC HSE
Sbjct: 764 NKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSE 823

Query: 517 KLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
           +LA+AFGL++T   T +QV KNLR+C DCH V K ISK+  RE++VRD  RFH FKDGAC
Sbjct: 824 RLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGAC 883

Query: 577 SCKDYW 582
           SC DYW
Sbjct: 884 SCGDYW 889



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 225/467 (48%), Gaps = 48/467 (10%)

Query: 16  AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND 75
           A +   + +L + + T G   S +F   +K+I  YA     +   + ++FR + +PS N 
Sbjct: 26  AATTTQLHKLHSLIITLGLHHSVIFS--AKLIAKYA--HFRDPTSSFSVFR-LASPSNNV 80

Query: 76  F--NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH 133
           +  N+++R L H+   + A+  Y +  R   + D  T    + ACA +L       IH  
Sbjct: 81  YLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDR 140

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           VL  GF +D  +G  L+D+Y +  ++  A+KVF+EM +RD+ SWN+LI+G       +EA
Sbjct: 141 VLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 200

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253
           ++++ R +  GV  P+  T+   L ACG LG+ +EGD IH  I +  +  +V+V N ++ 
Sbjct: 201 LEIYYRFRNLGVV-PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLS 259

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313
           MY K   L     +FD +  R + V+WNTM+  ++  G    +++LF +M     KPD +
Sbjct: 260 MYCKFNGLIDGRRIFDKMVLRDA-VSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLL 317

Query: 314 SYLAALCACNHAG-----------LVDDGVR--------LFNSMANCG-------VKPNM 347
           +  + L AC H G           ++  G          L N  A CG       V   M
Sbjct: 318 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 377

Query: 348 K-----HYGSVVDLLGRAGRLQEACDIVK--SVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
           K      + S++++  + G   EA  + K     +  D V +  LL      GD+ + + 
Sbjct: 378 KCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKE 437

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG---RVRKAMKNRDV 444
               L +MG N+  + V+ + L   Y +  ++G   +V + MK RD+
Sbjct: 438 LHCDLAKMGFNS--NIVVSNTLVDMYAKCGEMGDSLKVFENMKARDI 482



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 8/294 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K+L   L   G F S +  V + +++ YA     E+  +  +F  + A     +N ++  
Sbjct: 436 KELHCDLAKMG-FNSNIV-VSNTLVDMYA--KCGEMGDSLKVFENMKARDIITWNTIIAS 491

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
             HS      +    +M       D  T    L  C+ + A  +  +IH  + + G  +D
Sbjct: 492 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD 551

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G  L+++Y+K G + ++ +VF  M  +D+ +W ALI+         +AV  F  M+ 
Sbjct: 552 VPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEA 611

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEG-DKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            G+  P+ V  +  + AC H G  +EG +  H   ++ +++  +     V+D+ ++  LL
Sbjct: 612 AGIV-PDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALL 670

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           DKA +   ++  +     W  ++ A  + GD   A  + E++    + PDD  Y
Sbjct: 671 DKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERI--IELNPDDTGY 722


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/546 (36%), Positives = 311/546 (56%), Gaps = 10/546 (1%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + ++  YA S  N+L+ A A F  I +P    +NA+        +P  A++ + +ML   
Sbjct: 259 TTLLTTYARS--NDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEG 316

Query: 104 HRSDALTCSFALKACARVLALFETL---QIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
            R    T   AL ACA       +    +I S +   G   D  +    L++YAK G + 
Sbjct: 317 VRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLA 376

Query: 161 SAKKVFDEMGV--RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
            A+ VF+ +    RD  +WN+++A      L  EA +LF+ M+ E + KPN+VT +  L 
Sbjct: 377 DARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLD 436

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC-RKSL 277
           A     +  +G +IH  +     + + V+ NA+++MYAKCG LD A  +FD     ++ +
Sbjct: 437 ASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDV 496

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           + W ++V  +A +G   RAL+LF  M + GV+P+ +++++AL ACNH G ++ G  L + 
Sbjct: 497 IAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLSG 556

Query: 338 MA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
           M  + G+ P  KH+  +VDLLGR GRL EA  +++  S   D++ W  LL AC+   ++E
Sbjct: 557 MTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQA-DVITWMALLDACKNSKELE 615

Query: 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
             E  + +++++       +++L+++YAA  RW++   +RK M ++ ++  PG S +EV 
Sbjct: 616 RGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVN 675

Query: 457 GVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSE 516
             +H F   DKSH K  EIY +L+ + + IK  GY A T  VLHD+ +E KE  L  HSE
Sbjct: 676 QELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHSE 735

Query: 517 KLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
           KLA+AFGL+ST   + ++V KNLR+C DCH   KLISKV  R+I++RD  R+H F  G C
Sbjct: 736 KLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTC 795

Query: 577 SCKDYW 582
           SC DYW
Sbjct: 796 SCGDYW 801



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 200/410 (48%), Gaps = 28/410 (6%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYA-LSPLNELAYAHAL 64
           ++L  C   G +S   ++ +   +   G  + + F VR+ +++ Y  L  L++ A+   L
Sbjct: 117 SVLDSCVEAGLLSLEDVRAIHGRIVGAG-IEREAF-VRTALVDSYGKLGSLDD-AWEVFL 173

Query: 65  FRQINAPSTN--DFNAVLRGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKAC--- 118
            +    PST+    +A++     +  P  ++ L+Y   L G+  S  +T    L AC   
Sbjct: 174 RKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPS-GVTLVSVLNACSML 232

Query: 119 ----ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
               A    L + +++ S         D +LGTTLL  YA+  ++  A+  FD +   D+
Sbjct: 233 PVGSATAFVLEQAMEVVSAT------RDNVLGTTLLTTYARSNDLSRARATFDAIQSPDV 286

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG---AWKEGDK 231
            SWNA+ A   Q +   EA+ LF+RM +EGV +P+  T + AL AC       A   G +
Sbjct: 287 VSWNAMAAAYLQHHRPREALVLFERMLLEGV-RPSVATFITALTACAAYPPQTASAIGKR 345

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMAFAVH 290
           I   + E  L+ +  V NA ++MYAKCG L  A  VF+ I   R+  +TWN+M+ A+  H
Sbjct: 346 IQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHH 405

Query: 291 GDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKH 349
           G G  A ELF+ M     VKP+ V+++A L A      +  G  +   + + G + +   
Sbjct: 406 GLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVI 465

Query: 350 YGSVVDLLGRAGRLQEACDIV-KSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             +++++  + G L +A  I  KS S   D++ W +L+     YG  E A
Sbjct: 466 QNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERA 515



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 8/217 (3%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---GV 171
           + AC+ +  L    +IHS +    F  +++LG  L+ +Y+K G ++ AK+ FD +     
Sbjct: 14  VNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASK 73

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD- 230
           RD+ +WNA+I+   +   A EA+ LF+ M  +G   PN VT +  L +C   G     D 
Sbjct: 74  RDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLEDV 133

Query: 231 -KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF---DNIKCRKSLVTWNTMVMA 286
             IH  I    ++    V  A++D Y K G LD A+EVF    + +   SLVT + M+ A
Sbjct: 134 RAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISA 193

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
              +G    +L LF  M   G KP  V+ ++ L AC+
Sbjct: 194 CWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACS 230



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 8/195 (4%)

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           +PN   ++  + AC  LG    G +IH  I +   + N V+ NA+I MY+KCG L  A +
Sbjct: 4   RPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQ 63

Query: 267 VFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPDDVSYLAALCACN 323
            FD +    ++ +VTWN M+ AF  +G    AL+LF  M   G   P+ V++++ L +C 
Sbjct: 64  AFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCV 123

Query: 324 HAGL--VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS---MGTD 378
            AGL  ++D   +   +   G++       ++VD  G+ G L +A ++    S     T 
Sbjct: 124 EAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTS 183

Query: 379 MVLWQTLLGACQLYG 393
           +V    ++ AC   G
Sbjct: 184 LVTCSAMISACWQNG 198


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/581 (37%), Positives = 332/581 (57%), Gaps = 10/581 (1%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
            ++ ++ C+S G++     KQ+       G   S+LF V S + + Y  S    +  A  
Sbjct: 109 FSSAIRACASLGSIEMG--KQMHCLALKFG-IGSELF-VGSNLEDMY--SKCGAMFDACK 162

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++       + A++ G +   +   A+L +++M+      D       L AC  + A
Sbjct: 163 VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKA 222

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD-EMGVRDIASWNALIA 182
                 +HS V++ GF +D  +G  L D+Y+K G++ SA  VF  +   R++ S+  LI 
Sbjct: 223 CKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLID 282

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G  +     + + +F  ++ +G+ +PNE T    + AC +  A ++G ++H  + +   D
Sbjct: 283 GYVETEQIEKGLSVFVELRRQGI-EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFD 341

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            +  V + ++DMY KCGLL+ A + FD I    + + WN++V  F  HG G  A++ FE+
Sbjct: 342 EDPFVSSILVDMYGKCGLLEHAIQAFDEIG-DPTEIAWNSLVSVFGQHGLGKDAIKFFER 400

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAG 361
           M   GVKP+ +++++ L  C+HAGLV++G+  F SM    GV P  +HY  V+DLLGRAG
Sbjct: 401 MVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAG 460

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           RL+EA + +  +    +   W + LGAC+++GD EM ++A+ KLV++   N G  VLLSN
Sbjct: 461 RLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSN 520

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YA   +W+DV  VR  M++ +VKK+PG+S+++VG   H F   D SH +   IYEKLD 
Sbjct: 521 IYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDX 580

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           ++ +IK  GY   T  V  D+ +  KE  L  HSE++AVAF LIS      I V KNLR+
Sbjct: 581 LLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRV 640

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH  IK ISKV  R+IIVRD  RFH F DG+CSC DYW
Sbjct: 641 CVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 136/272 (50%), Gaps = 7/272 (2%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           Q+H+ ++  G+     L   L+++Y+K GE+  A K+FD M  R++ SW A+I+GL+Q +
Sbjct: 26  QLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNS 85

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
             SEA+  F  M++ G   P +     A+ AC  LG+ + G ++H    +  +   + V 
Sbjct: 86  KFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVG 144

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           + + DMY+KCG +  A +VF+ + C K  V+W  M+  ++  G+   AL  F++M    V
Sbjct: 145 SNLEDMYSKCGAMFDACKVFEEMPC-KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV 203

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
             D     + L AC        G  + +S+   G + ++    ++ D+  +AG ++ A +
Sbjct: 204 TIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASN 263

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
           +      G D      +   C + G VE  +I
Sbjct: 264 V-----FGIDSECRNVVSYTCLIDGYVETEQI 290


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/563 (38%), Positives = 336/563 (59%), Gaps = 11/563 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K++ A+    G F S +  V + +I+ YA      ++Y    F  +       +     G
Sbjct: 281 KEIHAYAIKNG-FDSNIL-VGNTLIDMYAKCCC--MSYGGRAFDLMAHKDLISWTTAAAG 336

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A +     A+   RQ+       DA      L AC  +  L +  +IH + +R G L+D
Sbjct: 337 YAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGG-LSD 395

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
            +L  T++DVY + G I  A ++F+ +  +D+ SW ++I+      LA++A+++F  MK 
Sbjct: 396 PVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            G+ +P+ VT++  L+A   L   K+G +IH +I  +   +   + N ++DMYA+CG ++
Sbjct: 456 TGL-EPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVE 514

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A+++F   K R +L+ W  M+ A+ +HG G  A+ELF +M    + PD +++LA L AC
Sbjct: 515 DAYKIFTCTKNR-NLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYAC 573

Query: 323 NHAGLVDDGVRLFNSMANC--GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           +H+GLV++G + F  +  C   ++P  +HY  +VDLLGR   L+EA  IVKS+       
Sbjct: 574 SHSGLVNEG-KSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPE 632

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +W  LLGAC+++ + E+ E+A+ KL+E+  +N G++VL+SN++AA  RW DV  VR  MK
Sbjct: 633 VWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMK 692

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVL 499
              + K PG S+IEVG  IH F + DK H +  +IY+KL ++  K+K E GY A T  VL
Sbjct: 693 GSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVL 752

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           H++GEEEK   L  HSE+LA+A+GL++T+E T I+V KNLR+C DCH    L+S+ + RE
Sbjct: 753 HNVGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERE 812

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           +IVRD  RFH FKDG CSC D+W
Sbjct: 813 LIVRDASRFHHFKDGMCSCGDFW 835



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 185/356 (51%), Gaps = 28/356 (7%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
             ++  A  +F  +       +N++L G   +   + A+ ++  +     + D ++    
Sbjct: 208 FGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISI 267

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           + A  R+  L    +IH++ +++GF ++ L+G TL+D+YAK   +    + FD M  +D+
Sbjct: 268 IVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDL 327

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA-LAACGHLGAWKEGDKIH 233
            SW    AG AQ     +A++L ++++MEG+    + T++G+ L AC  L    +  +IH
Sbjct: 328 ISWTTAAAGYAQNKCYLQALELLRQLQMEGM--DVDATMIGSILLACRGLNCLGKIKEIH 385

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            Y     L  + V+ N +ID+Y +CG++D A  +F++I+C K +V+W +M+  +  +G  
Sbjct: 386 GYTIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIEC-KDVVSWTSMISCYVHNGLA 443

Query: 294 PRALELFEQMGRAGVKPDD---VSYLAALCACN--------HAGLVDDGVRLFNSMANCG 342
            +ALE+F  M   G++PD    VS L+A+C+ +        H  ++  G  L  S++N  
Sbjct: 444 NKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISN-- 501

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
                    ++VD+  R G +++A  I  + +   +++LW  ++ A  ++G  E A
Sbjct: 502 ---------TLVDMYARCGSVEDAYKIF-TCTKNRNLILWTAMISAYGMHGYGEAA 547



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 153/300 (51%), Gaps = 3/300 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F +++  S   +NA++ G   + +   A+  YR+M       D+ T    LKAC  
Sbjct: 11  AEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGI 70

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-DIASWNA 179
           V  LF   +IH   +++G  +   +  +L+ +YAK  +I  A+K+FD M VR D+ SWN+
Sbjct: 71  VEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNS 130

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I+  +   + +EA+ LF  M   GV   N  T   AL AC      K G +IH  I + 
Sbjct: 131 IISAYSGNGMCTEALCLFSEMLKAGVV-TNTYTFAAALQACEDSSFIKLGMQIHAAILKS 189

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
              ++V V NA++ MY + G + +A  +F N++  K +VTWN+M+  F  +G    ALE 
Sbjct: 190 GRVLDVYVANALVAMYVRFGKMPEAAVIFGNLE-GKDIVTWNSMLTGFIQNGLYSEALEF 248

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           F  +  A +KPD VS ++ + A    G + +G  +       G   N+    +++D+  +
Sbjct: 249 FYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAK 308



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 173/352 (49%), Gaps = 10/352 (2%)

Query: 37  SKLFPVRSKIIEFYALSPLNELAYAHALF-RQINAPSTNDFNAVLRGLAHSSKPTNAVLW 95
           S +F V S ++  YA    N++  A  LF R         +N+++   + +   T A+  
Sbjct: 91  SFVFVVNS-LVALYA--KCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCL 147

Query: 96  YRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK 155
           + +ML+    ++  T + AL+AC     +   +QIH+ +L+ G + D  +   L+ +Y +
Sbjct: 148 FSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVR 207

Query: 156 VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG 215
            G++  A  +F  +  +DI +WN+++ G  Q  L SEA++ F  ++     KP++V+++ 
Sbjct: 208 FGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQ-NADLKPDQVSIIS 266

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            + A G LG    G +IH Y  +   D N++V N +IDMYAKC  +      FD +   K
Sbjct: 267 IIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFD-LMAHK 325

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
            L++W T    +A +    +ALEL  Q+   G+  D     + L AC     +     + 
Sbjct: 326 DLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIH 385

Query: 336 NSMANCGVK-PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
                 G+  P +++  +++D+ G  G +  A  I +S+    D+V W +++
Sbjct: 386 GYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFESIEC-KDVVSWTSMI 434



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 130/236 (55%), Gaps = 4/236 (1%)

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV-FKPNE 210
           +Y K G ++ A+ +FD+M  R I +WNA++ G      A  A+++++ M+  GV F    
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
             VL  L ACG +     G +IH    +   D  V V N+++ +YAKC  ++ A ++FD 
Sbjct: 61  FPVL--LKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDR 118

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
           +  R  +V+WN+++ A++ +G    AL LF +M +AGV  +  ++ AAL AC  +  +  
Sbjct: 119 MYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKL 178

Query: 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           G+++  ++   G   ++    ++V +  R G++ EA  I  ++  G D+V W ++L
Sbjct: 179 GMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLE-GKDIVTWNSML 233


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/569 (36%), Positives = 314/569 (55%), Gaps = 46/569 (8%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           ++L  A  L   +  P    +NA++ G         A   +R+M     + D  T +  +
Sbjct: 231 DDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLI 290

Query: 116 KACARV---LALFET-LQIHSHVLR------HGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            AC      + +F    Q+H ++LR      H F+    +   L+  Y K   ++ A++V
Sbjct: 291 SACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLS--VNNALITFYTKYDRMIEARRV 348

Query: 166 FDEMGVRDIASWNA-------------------------------LIAGLAQGNLASEAV 194
           FD+M VRDI SWNA                               +I+GLAQ     E +
Sbjct: 349 FDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGL 408

Query: 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
            LF +MK EG+ +P +    GA+ AC  LG+   G +IH  +     D  +   NA+I M
Sbjct: 409 KLFNQMKSEGL-EPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITM 467

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
           Y++CG+++ A  VF  +    S V+WN M+ A A HG G +A+ELFEQM +  + PD ++
Sbjct: 468 YSRCGVVESAESVFLTMPYVDS-VSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRIT 526

Query: 315 YLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
           +L  L ACNHAGL+ +G   F++M    G+ P   HY  ++DLL RAG   +A  ++KS+
Sbjct: 527 FLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSM 586

Query: 374 SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
                  +W+ LL  C+++G++E+   A+ +L+E+     G +++LSN+YAA  +WD+V 
Sbjct: 587 PFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVA 646

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA 493
           RVR  M+ R VKK PG S++EV  ++H F   D  H + + +Y  L +++ ++K+ GY  
Sbjct: 647 RVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVP 706

Query: 494 GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
            T  VLHD+  E KE++L  HSEKLAV +G++      +I+VFKNLRIC DCH+  K IS
Sbjct: 707 DTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYIS 766

Query: 554 KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KV  REI+VRDR RFH FK+G CSC +YW
Sbjct: 767 KVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 106/492 (21%), Positives = 197/492 (40%), Gaps = 120/492 (24%)

Query: 16  AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPS--- 72
           + + I  + + AH+ T+G F+   F + +++I  Y  S  + + YA  LF +I  P    
Sbjct: 18  STTQIIARAVHAHILTSG-FKPNTF-ILNRLINIYCKS--SNITYARKLFDKIPKPDIVA 73

Query: 73  ------------------------------TNDFNAVLRGLAHSSKPTNAVLWYRQMLRG 102
                                         T  +NA++   +H +    A+  + QM R 
Sbjct: 74  RTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRY 133

Query: 103 SHRSDALTCSFALKACARVLALFETLQ-IHSHVLRHGFL-----ADALLG---------- 146
               D  T S  L A + +       Q +H  V++ G L      +ALL           
Sbjct: 134 GFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPL 193

Query: 147 ---------------------------TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
                                      TT++  Y +  ++V+A+++ D +      +WNA
Sbjct: 194 VKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNA 253

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG----HLGAWKEGDKIHEY 235
           +I+G  +  L  EA D F+RM   G+ + +E T    ++ACG     +G +  G ++H Y
Sbjct: 254 MISGYVRRGLYEEAFDTFRRMHSMGI-QEDEYTYTSLISACGSCNEKMGMFNCGRQVHGY 312

Query: 236 IREERLDMN----VVVCNAVIDMYAKCGLLDKAFEVFDNIKCR----------------- 274
           I    ++ +    + V NA+I  Y K   + +A  VFD +  R                 
Sbjct: 313 ILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQR 372

Query: 275 -------------KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
                        ++++TW  M+   A +G G   L+LF QM   G++P D ++  A+ A
Sbjct: 373 IEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITA 432

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C+  G +D+G ++ + +   G    +    +++ +  R G ++ A  +  ++    D V 
Sbjct: 433 CSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPY-VDSVS 491

Query: 382 WQTLLGACQLYG 393
           W  ++ A   +G
Sbjct: 492 WNAMIAALAQHG 503


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/542 (36%), Positives = 324/542 (59%), Gaps = 6/542 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +++ Y  S    +  A  +F ++   +   +N+++ G   +  P  A+  +++M+ 
Sbjct: 313 VSTALVDMY--SKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMD 370

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                  +T   AL ACA +  + +   +H  + +    +D  +  +L+ +Y+K   +  
Sbjct: 371 EQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDI 430

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A ++F+ +  + + SWNA+I G AQ    +EA+D F +M+++ + KP+  T++  + A  
Sbjct: 431 AAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNI-KPDSFTMVSVIPALA 489

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L    +   IH  +    LD NV V  A++DMYAKCG +  A ++FD +  R  + TWN
Sbjct: 490 ELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERH-VTTWN 548

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-N 340
            M+  +  HG G  ALELFE+M +  +KP++V++L  L AC+H+GLV++G + F SM  +
Sbjct: 549 AMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKD 608

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            G++P M HYG++VDLLGRA RL EA D ++ + +   + ++  +LGAC+++ +VE+ E 
Sbjct: 609 YGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEK 668

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A+ ++ ++  ++ G  VLL+N+YA    WD V RVR  M+ + ++K PG+S +E+   +H
Sbjct: 669 AANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVH 728

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F++   SH + ++IY  L+ +  +IK  GY   T+ V HD+ +  KE  L  HSEKLA+
Sbjct: 729 TFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSV-HDVEDVVKEQLLNSHSEKLAI 787

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AF L++TS  T+I + KNLR+C DCH+  K IS V  REIIVRD  RFH FKDG CSC D
Sbjct: 788 AFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGD 847

Query: 581 YW 582
           YW
Sbjct: 848 YW 849



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 194/385 (50%), Gaps = 13/385 (3%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL+ C+S   +  +H  Q    +   G +   LF  ++K++  +       L  A  +F+
Sbjct: 83  LLELCTS---MKELH--QFIPLIIKNGLYSEHLF--QTKLVSLFC--KFGSLHEAARVFQ 133

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            I       ++ +L+G A +S   +AV ++ +M     R      ++ LK C     L +
Sbjct: 134 PIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRK 193

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             +IH  ++ +GF ++    T ++++YAK   +  A K+FD M  RD+  WN +I+G AQ
Sbjct: 194 GKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQ 253

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
                 A++L  RM+ EG  +P+ +T++  L A   +G+ + G  IH Y      +  V 
Sbjct: 254 NGFGKTALELVLRMQEEGK-RPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVN 312

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V  A++DMY+KCG +  A  +FD +   K++V+WN+M+  +  +GD   A+E+F++M   
Sbjct: 313 VSTALVDMYSKCGSVGTARLIFDRM-TGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDE 371

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            V+  +V+ + AL AC   G V+ G  +   +    +  ++    S++ +  +  R+  A
Sbjct: 372 QVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIA 431

Query: 367 CDIVKSVSMGTDMVLWQTL-LGACQ 390
            +I +++   T +V W  + LG  Q
Sbjct: 432 AEIFENLQHKT-LVSWNAMILGYAQ 455


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/442 (42%), Positives = 278/442 (62%), Gaps = 2/442 (0%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           DA+L T ++  Y   G +  A + F  M VR++ SWNA++AG  + + A +A+ +FK M 
Sbjct: 165 DAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMV 224

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            + + +PN  T+   L  C +L A   G ++H++  +  L  ++ V  +++ MY KCG L
Sbjct: 225 EDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDL 284

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           D A ++FD +   K +V WN M+  +A HG G +A++LFE+M   GV PD ++ LA L A
Sbjct: 285 DDACKLFDEMHT-KDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTA 343

Query: 322 CNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C H GL D G++ F +M     ++P + HY  +VDLL RAG L+ A +++ S+       
Sbjct: 344 CIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPS 403

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
            + TLL AC++Y ++E AE A+RKL+E    N G +V L+N+YA   RWDDV RVR+ MK
Sbjct: 404 AYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMK 463

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
           +  V K PG+S++E+ GV H+F ++D+ H +   I++KLD +   +K  GY+      LH
Sbjct: 464 DNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALH 523

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           D+ E  K   L  HSEKLA+AFGLISTS   ++++FKNLRIC DCH+  KLISK+ +REI
Sbjct: 524 DVEESLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREI 583

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           I+RD  RFH F+ G CSC DYW
Sbjct: 584 ILRDTTRFHHFRGGHCSCGDYW 605



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 130/249 (52%), Gaps = 7/249 (2%)

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLA 123
           FR +   +   +NAV+ G   +S+  +A+  ++ M+  +  + +  T S  L  C+ + A
Sbjct: 189 FRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSA 248

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L    Q+H   ++        +GT+LL +Y K G++  A K+FDEM  +DI +WNA+I+G
Sbjct: 249 LGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISG 308

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE-RLD 242
            AQ     +A+ LF++MK EGV  P+ +T+L  L AC H G    G +  E ++E   ++
Sbjct: 309 YAQHGGGRKAIKLFEKMKDEGVV-PDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIE 367

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
             V   + ++D+  + GLL++A  +  ++        + T++ A  V+    + LE  E 
Sbjct: 368 PQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVY----KNLEFAEF 423

Query: 303 MGRAGVKPD 311
             R  ++ D
Sbjct: 424 AARKLIEQD 432



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 11/253 (4%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           DA+   TLL  +   G+I  A +VF  M VRD+ SWN +++GL++     EA  +F+ M 
Sbjct: 71  DAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMP 130

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
                  N   ++ A A+ G +GA           R      + ++  A++  Y   G +
Sbjct: 131 ARNAVSWN--AMVAARASSGDMGA------AENLFRNAPEKTDAILWTAMVSGYMDTGNV 182

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDDVSYLAALC 320
            KA E F  +  R +LV+WN +V  +  +     AL +F+ M   A V+P+  +  + L 
Sbjct: 183 QKAMEYFRAMPVR-NLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLL 241

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
            C++   +  G ++        +  ++    S++ +  + G L +AC +   +    D+V
Sbjct: 242 GCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHT-KDIV 300

Query: 381 LWQTLLGACQLYG 393
            W  ++     +G
Sbjct: 301 AWNAMISGYAQHG 313



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 119/298 (39%), Gaps = 47/298 (15%)

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
           GT  +    +  ++  A++ F    ++   ++N L+AG A+ +      D   R   + +
Sbjct: 10  GTAAVAAAVRRRDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLAD--ARRLFDSI 67

Query: 206 FKPNEV---TVLGALAACGHL-GAWK-----------------EGDKIHEYIREERLDM- 243
             P+ V   T+L    ACG + GAW+                  G   +  I E      
Sbjct: 68  PHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFR 127

Query: 244 -----NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
                N V  NA++   A  G +  A  +F N   +   + W  MV  +   G+  +A+E
Sbjct: 128 AMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAME 187

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSV---- 353
            F  M    +    VS+ A +          D +R+F +M  +  V+PN     SV    
Sbjct: 188 YFRAMPVRNL----VSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGC 243

Query: 354 --VDLLGRAGRLQEAC---DIVKSVSMGTDMVLWQTLLG----ACQLYGDVEMAEIAS 402
             +  LG   ++ + C    + +S+++GT ++      G    AC+L+ ++   +I +
Sbjct: 244 SNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVA 301


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/533 (38%), Positives = 327/533 (61%), Gaps = 27/533 (5%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLR---GSHRSDALTCSFALKACARVLALFETLQIHS 132
           +N+++ G   + +   A+  +  M+     +   + +T    LK+CA +  +  +  +H 
Sbjct: 236 WNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHE 295

Query: 133 HVL-RHGFL---ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           ++  RH  L    D ++ T LLD++A+ G +  A+++FD +  +++  W+A+IAG  QG+
Sbjct: 296 YISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGS 355

Query: 189 LASEAVDLFKRMKMEGVF-----KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
              EA+ LF++M MEG       KPN VT++  +AAC  LGA +    IH+Y     LD 
Sbjct: 356 CPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQ 415

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
           +  + +A+IDM AKCG ++   +VF  + +  +++V+W++M+ A  +HG+G RALELF +
Sbjct: 416 DARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSE 475

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAG 361
           M   G +P++++Y++ L AC+HAGLV+ G   FNSM  + G+ P  KHY  +VDLLGRAG
Sbjct: 476 MRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAG 535

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L EA +++ ++ +  D+ LW +LL AC L+G+ ++ EI  +K++ + SN+ G  VLL+N
Sbjct: 536 HLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLAN 595

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +Y    RWDDV R+R  ++   ++K+PG S+IE+G  ++ F   D+SH +   IY++LD 
Sbjct: 596 MYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDG 655

Query: 482 IMFKIKEYG-YAAGTSCVLHDIGEEEKENALC-YHSEKLAVAFGLI----------STSE 529
           +  ++++   Y   T   + D G+       C YHSE+LA+AFGLI          S   
Sbjct: 656 LDERVRKAAKYVTETGLNVED-GDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLRT 714

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           AT I++ KNLR+CRDCH   KL+SKV +RE+IVRD  RFH F+DG CSC DYW
Sbjct: 715 ATPIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 158/320 (49%), Gaps = 20/320 (6%)

Query: 86  SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           +  P  A+ ++ +M   +  S+  T    LKACA +  L  TLQ+H+++ R G  AD   
Sbjct: 30  TQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFS 89

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEM--GVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
              L+D Y K G    A +VFDEM  G  D+ SW ALI+  +      EA   F RM+  
Sbjct: 90  AAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWM 149

Query: 204 GVFKPNE-----VTVLGALAACGHLG----AWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
             +  +E     V  LGAL +   +G      + G  +H  + +    ++  + N+++ M
Sbjct: 150 RGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHM 209

Query: 255 YAKCGLLDKAFEVFDNIKC-RKSLVTWNTMVMAFAVHGDGPRALELFEQM---GRAGVKP 310
           Y+ C  +  A+ VF+ I   ++ +V+WN+++  F ++G+  RAL  FE M   G + V+P
Sbjct: 210 YSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEP 269

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSM----ANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           + V+ +A L +C   G V+    +   +    ++  V  ++    +++D+  R G L  A
Sbjct: 270 NRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALA 329

Query: 367 CDIVKSVSMGTDMVLWQTLL 386
            +I   V  G ++V W  ++
Sbjct: 330 REIFDGVE-GKNVVCWSAMI 348



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 104/262 (39%), Gaps = 34/262 (12%)

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           +D   WN+LIA  A  N    A+  F RM+   V   N  T    L AC  L       +
Sbjct: 16  KDTFHWNSLIAKNATQN-PQTALTFFTRMQAHAV-PSNNFTFPALLKACAALRRLLPTLQ 73

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMAFAVH 290
           +H Y+    L  +     A++D Y KCG    A +VFD + +    +V+W  ++ A++ +
Sbjct: 74  VHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSN 133

Query: 291 GDGPRALELFEQM-------GRAGVKPDDVSYLAALCACN--------------HAGLVD 329
           G    A + F +M       G      D VS  A + AC               H  +V 
Sbjct: 134 GCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVK 193

Query: 330 DGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
            G  +   + N     +M H  S    +G A R+     I +      D+V W +L+   
Sbjct: 194 YGFGVSTHLGN-----SMVHMYSACKDVGGAWRVFNGIPIEQR-----DVVSWNSLISGF 243

Query: 390 QLYGDVEMAEIASRKLVEMGSN 411
            L G+ E A      +V  G++
Sbjct: 244 TLNGEAERALRTFEDMVSEGTS 265


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/581 (35%), Positives = 330/581 (56%), Gaps = 16/581 (2%)

Query: 6   ALLQKCSSNGAVS---HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           ++LQ C++ G VS    +H   ++A +     F + L  + +K            L  A 
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKC---------GVLDGAI 53

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F  ++  +   + +++   A       A+  + +M R     D  T +  L ACA   
Sbjct: 54  LVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNG 113

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           +L     +H+++  +   ++  +   L+D+YAK G +  A  VF EM V+DI SWN +I 
Sbjct: 114 SLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIG 173

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G ++ +L +EA+ LF  M +E   KP+  T+   L AC  L +   G ++H +I      
Sbjct: 174 GYSKNSLPNEALSLFGDMVLE--MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFF 231

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            +  V NA++DMY KCG+   A  +FD I   K L+TW  M+  + +HG G  A+  F +
Sbjct: 232 SDQQVANALVDMYVKCGVPVLARLLFDMIP-TKDLITWTVMIAGYGMHGFGNNAITTFNE 290

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAG 361
           M +AG++PD+VS+++ L AC+H+GL+D+G R FN M + C VKP ++HY  +VDLL R+G
Sbjct: 291 MRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSG 350

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           +L  A   +KS+ +  D  +W  LL  C+++ DV++AE  +  + E+   N G +VLL+N
Sbjct: 351 KLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLAN 410

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
            YA  E+W++V ++R+ +  R +KK PG S+IEV   +H F   + SH + ++I   L  
Sbjct: 411 TYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKR 470

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           +  K+KE GY   T   L +    +KE ALC HSEKLA+AFG+++   A +I+V KNLR+
Sbjct: 471 LRSKMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRV 530

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH++ K ISK   REI++RD  RFH FKDG C C+ +W
Sbjct: 531 CGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/578 (36%), Positives = 339/578 (58%), Gaps = 14/578 (2%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           A  + L++ C S+ AV   ++  +  HL   G  Q  +F V   I  +   + LN+   A
Sbjct: 14  ATYSELIKCCLSHRAVHEGNL--ICRHLYFNGH-QPMMFLVNVLINMYVKFNLLND---A 67

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
           H LF Q+   +   +  ++   +       A+     MLR   R +  T S  L+AC   
Sbjct: 68  HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACN-- 125

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
             + +   +H  +++ G  +D  + + L+DV+AK+GE   A  VFDEM   D   WN++I
Sbjct: 126 -GMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 184

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            G AQ + +  A++LFKRMK  G F   + T+   L AC  L   + G + H +I   + 
Sbjct: 185 GGFAQNSRSDVALELFKRMKRAG-FIAEQATLTSVLRACTGLALLELGMQAHVHIV--KY 241

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           D ++++ NA++DMY KCG L+ A  VF+ +K  + ++TW+TM+   A +G    AL+LFE
Sbjct: 242 DQDLILNNALVDMYCKCGSLEDARRVFNQMK-ERDVITWSTMISGLAQNGYSQEALKLFE 300

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRA 360
            M  +G KP+ ++ +  L AC+HAGL++DG   F SM    G+ P  +HYG ++DLLG+A
Sbjct: 301 LMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKA 360

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G+L +A  ++  +    D V W+TLLGAC++  ++ +AE A++K++ +   + G + +LS
Sbjct: 361 GKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLS 420

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA  ++WD V  +RK M++  +KK PG S+IEV   IH F   D+SH +  E+ +KL+
Sbjct: 421 NIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLN 480

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           +++ ++   GY   T+ VL D+  E+ E++L +HSEKLA+AFGL++      I++ KNLR
Sbjct: 481 QLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLR 540

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSC 578
           IC DCH   KL SK+ NR I++RD +R+H F+DG CSC
Sbjct: 541 ICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSC 578



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 143/283 (50%), Gaps = 8/283 (2%)

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
           +D+ T S  +K C    A+ E   I  H+  +G      L   L+++Y K   +  A ++
Sbjct: 11  ADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQL 70

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FD+M  R++ SW  +I+  ++  +  +A++L   M  +GV +PN  T    L AC  +  
Sbjct: 71  FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGV-RPNVYTYSSVLRACNGMSD 129

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            +    +H  I +E L+ +V V +A+ID++AK G  + A  VFD +    ++V WN+++ 
Sbjct: 130 VR---MLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV-WNSIIG 185

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
            FA +     ALELF++M RAG   +  +  + L AC    L++ G++    +       
Sbjct: 186 GFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQ 243

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           ++    ++VD+  + G L++A  +   +    D++ W T++  
Sbjct: 244 DLILNNALVDMYCKCGSLEDARRVFNQMK-ERDVITWSTMISG 285


>gi|255572345|ref|XP_002527111.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533534|gb|EEF35274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 412

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/327 (58%), Positives = 242/327 (74%), Gaps = 7/327 (2%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           +  LL KC S       H KQ  +HL TTG F+ K+ P RSK+++ YALS LN L+ A  
Sbjct: 1   MTTLLPKCRSLS-----HAKQHHSHLVTTGHFRFKISPSRSKLLQLYALS-LNNLSVAIK 54

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
            F QI  PST D+NA+LR L  S+ P ++  WYR M+RG ++ DALTC+F LKACAR LA
Sbjct: 55  TFYQIVTPSTADWNAILRALIQSTHPIDSFRWYRNMIRGLYKVDALTCTFVLKACARALA 114

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
             E+ Q+HSH +R GF ADALLGTTLLD+YAK+G + SA+KVFDEM V+  ASW ALI G
Sbjct: 115 CSESTQLHSHTVRKGFAADALLGTTLLDLYAKIGNLDSAQKVFDEMLVKVTASWTALIFG 174

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            AQGN  SEA+ LFKRM++ G+ KP+E T+L AL AC  LGA KEG+KIHE+I+ ++LD+
Sbjct: 175 FAQGNKPSEALGLFKRMEVLGL-KPDETTLLAALCACSQLGASKEGEKIHEFIKNQKLDL 233

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           NV VCNA+IDMYAKCG  DKA+ VF+++   K+LV WNTMVMAFA+HGDG +AL LF+ M
Sbjct: 234 NVRVCNALIDMYAKCGSADKAYLVFESLGPNKTLVNWNTMVMAFAMHGDGVKALGLFKHM 293

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDD 330
           G+ G+ PD  SYLA LCACN++G V++
Sbjct: 294 GQEGLIPDAKSYLAVLCACNYSGSVEE 320



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 191/375 (50%), Gaps = 21/375 (5%)

Query: 129 QIHSHVLRHGFLADALLGT--TLLDVYA-KVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           Q HSH++  G     +  +   LL +YA  +  +  A K F ++     A WNA++  L 
Sbjct: 16  QHHSHLVTTGHFRFKISPSRSKLLQLYALSLNNLSVAIKTFYQIVTPSTADWNAILRALI 75

Query: 186 QGNLASEAVDLFK--RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
           Q   ++  +D F+  R  + G++K + +T    L AC    A  E  ++H +   +    
Sbjct: 76  Q---STHPIDSFRWYRNMIRGLYKVDALTCTFVLKACARALACSESTQLHSHTVRKGFAA 132

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           + ++   ++D+YAK G LD A +VFD +   K   +W  ++  FA       AL LF++M
Sbjct: 133 DALLGTTLLDLYAKIGNLDSAQKVFDEMLV-KVTASWTALIFGFAQGNKPSEALGLFKRM 191

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
              G+KPD+ + LAALCAC+  G   +G ++   + N  +  N++   +++D+  + G  
Sbjct: 192 EVLGLKPDETTLLAALCACSQLGASKEGEKIHEFIKNQKLDLNVRVCNALIDMYAKCGSA 251

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-----EIASRKLVEMGSNNCGDFVL 418
            +A  + +S+     +V W T++ A  ++GD   A      +    L+    +     VL
Sbjct: 252 DKAYLVFESLGPNKTLVNWNTMVMAFAMHGDGVKALGLFKHMGQEGLIPDAKSYLA--VL 309

Query: 419 LSNLYAAY-----ERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
            +  Y+       ERW  V  +R+ M NRDV+KV G SYIE  GVI KF+  DKSH  WR
Sbjct: 310 CACNYSGSVEEVKERWTSVDWLRETMTNRDVEKVVGVSYIEEKGVIRKFYDGDKSHKSWR 369

Query: 474 EIYEKLDEIMFKIKE 488
           +IY KL EI FKIK+
Sbjct: 370 KIYAKLREIRFKIKD 384


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/533 (38%), Positives = 327/533 (61%), Gaps = 27/533 (5%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLR---GSHRSDALTCSFALKACARVLALFETLQIHS 132
           +N+++ G   + +   A+  +  M+     +   + +T    LK+CA +  +  +  +H 
Sbjct: 236 WNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHE 295

Query: 133 HVL-RHGFL---ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           ++  RH  L    D ++ T LLD++A+ G +  A+++FD +  +++  W+A+IAG  QG+
Sbjct: 296 YISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGS 355

Query: 189 LASEAVDLFKRMKMEGVF-----KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
              EA+ LF++M MEG       KPN VT++  +AAC  LGA +    IH+Y     LD 
Sbjct: 356 CPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQ 415

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
           +  + +A+IDM AKCG ++   +VF  + +  +++V+W++M+ A  +HG+G RALELF +
Sbjct: 416 DARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSE 475

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAG 361
           M   G +P++++Y++ L AC+HAGLV+ G   FNSM  + G+ P  KHY  +VDLLGRAG
Sbjct: 476 MRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAG 535

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L EA +++ ++ +  D+ LW +LL AC L+G+ ++ EI  +K++ + SN+ G  VLL+N
Sbjct: 536 HLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLAN 595

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +Y    RWDDV R+R  ++   ++K+PG S+IE+G  ++ F   D+SH +   IY++LD 
Sbjct: 596 MYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDG 655

Query: 482 IMFKIKEYG-YAAGTSCVLHDIGEEEKENALC-YHSEKLAVAFGLI----------STSE 529
           +  ++++   Y   T   + D G+       C YHSE+LA+AFGLI          S   
Sbjct: 656 LDERVRKAAKYVTETGLNVED-GDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRT 714

Query: 530 ATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           AT I++ KNLR+CRDCH   KL+SKV +RE+IVRD  RFH F+DG CSC DYW
Sbjct: 715 ATPIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 158/320 (49%), Gaps = 20/320 (6%)

Query: 86  SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           +  P  A+ ++ +M   +  S+  T    LKACA +  L  TLQ+H+++ R G  AD   
Sbjct: 30  TQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFS 89

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEM--GVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
              L+D Y K G    A +VFDEM  G  D+ SW ALI+  +      EA   F RM+  
Sbjct: 90  AAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWM 149

Query: 204 GVFKPNE-----VTVLGALAACGHLG----AWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
             +  +E     V  LGAL +   +G      + G  +H  + +    ++  + N+++ M
Sbjct: 150 RGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHM 209

Query: 255 YAKCGLLDKAFEVFDNIKC-RKSLVTWNTMVMAFAVHGDGPRALELFEQM---GRAGVKP 310
           Y+ C  +  A+ VF+ I   ++ +V+WN+++  F ++G+  RAL  FE M   G + V+P
Sbjct: 210 YSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEP 269

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSM----ANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           + V+ +A L +C   G V+    +   +    ++  V  ++    +++D+  R G L  A
Sbjct: 270 NRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALA 329

Query: 367 CDIVKSVSMGTDMVLWQTLL 386
            +I   V  G ++V W  ++
Sbjct: 330 REIFDGVE-GKNVVCWSAMI 348



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 103/262 (39%), Gaps = 34/262 (12%)

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
           +D   WN+LIA  A  N    A+  F RM+   V   N  T    L AC  L       +
Sbjct: 16  KDTFHWNSLIAKNATQN-PQTALTFFTRMQAHAV-PSNNFTFPALLKACAALRRLLPTLQ 73

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMAFAVH 290
           +H Y+    L  +     A++D Y KCG    A +VFD + +    +V+W  ++ A++ +
Sbjct: 74  VHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSN 133

Query: 291 GDGPRALELFEQM-------GRAGVKPDDVSYLAALCACN--------------HAGLVD 329
           G    A   F +M       G      D VS  A + AC               H  +V 
Sbjct: 134 GCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVK 193

Query: 330 DGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
            G  +   + N     +M H  S    +G A R+     I +      D+V W +L+   
Sbjct: 194 YGFGVSTHLGN-----SMVHMYSACKDVGGAWRVFNGIPIEQR-----DVVSWNSLISGF 243

Query: 390 QLYGDVEMAEIASRKLVEMGSN 411
            L G+ E A      +V  G++
Sbjct: 244 XLNGEAERALRTFEDMVSEGTS 265


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/582 (35%), Positives = 346/582 (59%), Gaps = 12/582 (2%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           N LL++C+  G +     K +  HL  + +F++ L  +++ I+  YA      L  A  +
Sbjct: 95  NKLLKRCTMLGKLKQG--KLVHTHLMNS-KFRNDLV-IKNSILFMYA--KCGSLEIARQV 148

Query: 65  FRQINAPSTNDFNAVLRGLA---HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
           F ++       + +++ G +   ++S  T A++ + +M+R   R +    S  +K C  +
Sbjct: 149 FDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFL 208

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
            +  +  QIH    ++GF  +  +G++L+D+YA+ GE+  ++ VFDE+  ++  SWNALI
Sbjct: 209 GSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALI 268

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           +G A+     EA+ LF +M+ EG F   E T    L +    G+ ++G  +H ++ +   
Sbjct: 269 SGFARKGEGEEALGLFVKMQREG-FGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGK 327

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
            +   V N ++ MYAK G +  A +VFD +  +  +V+ N+M++ +A HG G  A+ELFE
Sbjct: 328 KLVGYVGNTLLHMYAKSGNICDAKKVFDRL-VKVDVVSCNSMLIGYAQHGLGKEAVELFE 386

Query: 302 QMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
           +M     ++P+D+++L+ L AC+HAGL+D+G+  F  M   G++P + HY +VVDL GRA
Sbjct: 387 EMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRA 446

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L +A   ++ + +  +  +W  LLGA +++ + EM   A++K++E+     G   LLS
Sbjct: 447 GLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLS 506

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA+  +W DV +VRK MK+  +KK P  S++E+   +H F  +D SH +  ++YE  +
Sbjct: 507 NIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWE 566

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
            +  KIKE GY   TS V   + ++EKE  L YHSEKLA+AF L++T   + I++ KN+R
Sbjct: 567 NLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIR 626

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +C DCH  IK +S V  REIIVRD  RFH F+DG+CSC+DYW
Sbjct: 627 VCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 134/246 (54%), Gaps = 5/246 (2%)

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
           GS   D    +  LK C  +  L +   +H+H++   F  D ++  ++L +YAK G +  
Sbjct: 85  GSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEI 144

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD---LFKRMKMEGVFKPNEVTVLGALA 218
           A++VFDEM V+D+ +W ++I G +Q   AS A     LF  M  +G+ +PNE  +   + 
Sbjct: 145 ARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGL-RPNEFALSSLVK 203

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
            CG LG+  +G +IH    +     NV V ++++DMYA+CG L ++  VFD ++  K+ V
Sbjct: 204 CCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELE-SKNEV 262

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +WN ++  FA  G+G  AL LF +M R G    + +Y A LC+ +  G ++ G  L   M
Sbjct: 263 SWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHM 322

Query: 339 ANCGVK 344
              G K
Sbjct: 323 MKSGKK 328


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/530 (38%), Positives = 304/530 (57%), Gaps = 38/530 (7%)

Query: 89  PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
           P   +  +R+M+    + D +T    L AC+ +  L     IH   +RHG + D  +   
Sbjct: 425 PQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNA 484

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL---------------------------- 180
           LL +YAK   +  A+ VFD +  R++ASWN +                            
Sbjct: 485 LLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKAD 544

Query: 181 -------IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
                  I G  + +   EA+++F++M+  G FKP+E T+   L AC      + G +IH
Sbjct: 545 EITWSVVIGGCVKNSRIEEAMEIFRKMQTMG-FKPDETTIYSILRACSLSECLRMGKEIH 603

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            Y+     D ++   NA++DMYAKCG L  +  VFD +   K + +WNTM+ A  +HG+G
Sbjct: 604 CYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPI-KDVFSWNTMIFANGMHGNG 662

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGS 352
             AL LFE+M  + VKPD  ++   L AC+H+ LV++GV++FNSM+ +  V+P  +HY  
Sbjct: 663 KEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTC 722

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           VVD+  RAG L+EA   ++ + M    + W+  L  C++Y +VE+A+I+++KL E+  N 
Sbjct: 723 VVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNG 782

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW 472
             ++V L N+    + W +  ++RK MK R + K PG S+  VG  +H F   DKS+++ 
Sbjct: 783 SANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMES 842

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
            +IY  LDE+  KIK  GY   T  VLHDI +EEK  +LC HSEKLAVAFG+++ +  ++
Sbjct: 843 DKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNLNGQST 902

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           I+VFKNLRIC DCH+ IK +S V    I+VRD +RFH FK+G CSCKD+W
Sbjct: 903 IRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 158/319 (49%), Gaps = 12/319 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A A+F  +   +   +N++     +   P   +  +R+M     + D +  S  L AC++
Sbjct: 296 AQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQ 355

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L     IH   ++HG + D  + T L+++YA    +  A+ VFD M  R++ +WN+L
Sbjct: 356 LKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSL 415

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
            +         + +++F+ M + GV KP+ VT+L  L AC  L   K G  IH +     
Sbjct: 416 SSCYVNCGFPQKGLNVFREMVLNGV-KPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHG 474

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           +  +V VCNA++ +YAKC  + +A  VFD I  R+ + +WN ++ A+  + +  + L +F
Sbjct: 475 MVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHRE-VASWNGILTAYFTNKEYEKGLYMF 533

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            QM R  VK D++++   +  C     +++ + +F  M   G KP+     S++      
Sbjct: 534 SQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSIL------ 587

Query: 361 GRLQEACDIVKSVSMGTDM 379
                AC + + + MG ++
Sbjct: 588 ----RACSLSECLRMGKEI 602



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 137/264 (51%), Gaps = 2/264 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  + A     +N++     +   P   +  +R+M     +++ LT S  L  C+ 
Sbjct: 94  ARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSD 153

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L    +IH  V+RHG + D  + +  ++ YAK   +  A+ VFD M  RD+ +WN+L
Sbjct: 154 LQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSL 213

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
            +         + +++F+ M ++GV KP+ VTV   L+AC  L   K G  IH +  +  
Sbjct: 214 SSCYVNCGFPQKGLNVFREMVLDGV-KPDPVTVSCILSACSDLQDLKSGKAIHGFALKHG 272

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           +  NV V NA++++Y  C  + +A  VFD +   ++++TWN++   +   G   + L +F
Sbjct: 273 MVENVFVSNALVNLYESCLCVREAQAVFDLMP-HRNVITWNSLASCYVNCGFPQKGLNVF 331

Query: 301 EQMGRAGVKPDDVSYLAALCACNH 324
            +MG  GVKPD ++  + L AC+ 
Sbjct: 332 REMGLNGVKPDPMAMSSILPACSQ 355



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 3/242 (1%)

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
           G+ H   P  A+  Y        + D        KACA      +  Q H    R G ++
Sbjct: 15  GIPHG-LPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMS 73

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  +G   +  Y K   +  A++VFD++  RD+ +WN+L A         + +++F++M 
Sbjct: 74  DVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMG 133

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           +  V K N +TV   L  C  L   K G +IH ++    +  +V V +A ++ YAKC  +
Sbjct: 134 LNKV-KANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCV 192

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
            +A  VFD +   + +VTWN++   +   G   + L +F +M   GVKPD V+    L A
Sbjct: 193 REAQTVFDLMP-HRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSA 251

Query: 322 CN 323
           C+
Sbjct: 252 CS 253



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 6/234 (2%)

Query: 64  LFRQINAPSTN----DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           +F Q+N          ++ V+ G   +S+   A+  +R+M     + D  T    L+AC+
Sbjct: 532 MFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACS 591

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
               L    +IH +V RH    D      L+D+YAK G +  ++ VFD M ++D+ SWN 
Sbjct: 592 LSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNT 651

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-RE 238
           +I          EA+ LF++M +  V KP+  T    L+AC H    +EG +I   + R+
Sbjct: 652 MIFANGMHGNGKEALSLFEKMLLSMV-KPDSATFTCVLSACSHSMLVEEGVQIFNSMSRD 710

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
             ++        V+D+Y++ G L++A+     +    + + W   +    V+ +
Sbjct: 711 HLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKN 764


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/524 (38%), Positives = 307/524 (58%), Gaps = 11/524 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALKACA 119
           A  +F  +       +N ++ GL+ +     A   +R M +R +   +A+  + A   C+
Sbjct: 96  ARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALA---CS 152

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
             +   E L  ++         DA+L T ++  Y   G +  A + F  M VR++ SWNA
Sbjct: 153 GDMGAAEDLFRNAPEK-----TDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNA 207

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           ++AG  + + A +A+ +FK M  + + +PN  T+   L  C +L A   G ++H++  + 
Sbjct: 208 VVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKL 267

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            L  NV V  +++ MY KCG L+ A +VFD +   K +V WN M+  +A HG G +A++L
Sbjct: 268 PLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMST-KDIVAWNAMISGYAQHGGGMQAIKL 326

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLG 358
           FE+M   GV PD ++ LA L AC H GL D G++ F +M     ++P + HY  +VDLL 
Sbjct: 327 FEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLC 386

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG L+ A +++ S+        + TLL AC++Y ++E AE A+RKL+E    N G +V 
Sbjct: 387 RAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQ 446

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           L+N+YA   +W DV RVR+ MK+  V K PG+S++E+ GV H+F ++D+ H +   I++K
Sbjct: 447 LANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDK 506

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           LD +   +K  GY       LHD+ +  K   L  HSEKLA+AFGLISTS   ++++FKN
Sbjct: 507 LDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKN 566

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRIC DCH+  KLISK+ +REII+RD  RFH F+ G CSC DYW
Sbjct: 567 LRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 118/253 (46%), Gaps = 11/253 (4%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +   TLL  +   G+I  A++VF  M V+D+ SWN +++GL++   + EA  +F+ M 
Sbjct: 76  DTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP 135

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           +      N   ++ ALA  G +GA        +  R      + ++  A++  Y   G +
Sbjct: 136 VRNAVSWN--AMVAALACSGDMGA------AEDLFRNAPEKTDAILWTAMVSGYMDTGNV 187

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALC 320
            KA E F  +  R +LV+WN +V  +  +     AL +F+ M     V+P+  +  + L 
Sbjct: 188 QKAMEFFGAMPVR-NLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLL 246

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
            C++   +  G ++        +  N+    S++ +  + G L +AC +   +S   D+V
Sbjct: 247 GCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMST-KDIV 305

Query: 381 LWQTLLGACQLYG 393
            W  ++     +G
Sbjct: 306 AWNAMISGYAQHG 318


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/442 (44%), Positives = 281/442 (63%), Gaps = 3/442 (0%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +  T ++   A  GE  +A+++FD M  RD  +WNA+IAG      + EA+ LF  M+
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
             G     EVT++ AL AC  LGA + G  +H       + ++V +  A+IDMY+KCG +
Sbjct: 327 HAGA-AVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAV 385

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
             A EVFD++  R ++ TW + V   A++G G   L LF++M   GV+P+ V+++  L  
Sbjct: 386 AAAMEVFDSMGER-NVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRG 444

Query: 322 CNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C+ AGLVD+G   F+SM +N G+ P ++HYG +VDL GRAGRL +A + +  + +     
Sbjct: 445 CSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEG 504

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +W  LL A +++ +VE+ + A  KL+ + S N    VLLSN+YA  + W  V  VR  MK
Sbjct: 505 VWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMK 564

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
            + VKKVPG S IEVGG +H+FF   K+H + +EI   L E+  +++  GY A T  VL 
Sbjct: 565 AKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLF 624

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           DI EE+KE+A+  HSEKLA+AFGL++  E   I++ KNLR+C DCHD  K+ISKV+NREI
Sbjct: 625 DIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREI 684

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           ++RDR RFH FKDGACSCKDYW
Sbjct: 685 VMRDRNRFHHFKDGACSCKDYW 706



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 2/241 (0%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           AL+   E   A  LF  +       +NA++ G  H+ +   A+  + +M         +T
Sbjct: 277 ALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVT 336

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
              AL ACA++ AL     +HS     G      LGT L+D+Y+K G + +A +VFD MG
Sbjct: 337 LVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMG 396

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            R++ +W + ++GLA   +  + + LFKRM+  GV +PN VT +  L  C   G   EG 
Sbjct: 397 ERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGV-EPNGVTFVVVLRGCSMAGLVDEGR 455

Query: 231 KIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
              + ++    +D  +     ++D+Y + G LD A    + +        W  ++ A  +
Sbjct: 456 ACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRI 515

Query: 290 H 290
           H
Sbjct: 516 H 516


>gi|346703119|emb|CBX25218.1| hypothetical_protein [Oryza brachyantha]
          Length = 596

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/437 (40%), Positives = 282/437 (64%), Gaps = 4/437 (0%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ--GNLASEAVDLFKRMKMEGVF 206
           LLDV+ + G I S ++VFD +   D+ +WNAL++   +   + A   ++LF RM   G  
Sbjct: 161 LLDVFTRCGRIASCRRVFDRIACPDLPAWNALLSAYMRCASSAADAILELFSRMISLGTV 220

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           +PNE+T++  + ACG LGA   G   H Y+ + +L +N +V  A+++MYA CG LD A  
Sbjct: 221 RPNEITLVAVIGACGELGALGHGVWAHTYLVKRQLAINRIVTTALVEMYAGCGRLDLAEH 280

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF     R +   +N M+   A HG G  AL+LF++M  +GV  D V+ L+ LC+C HA 
Sbjct: 281 VFATASDRDTRC-YNAMLQGLAAHGHGRAALDLFDRMRGSGVPVDGVTILSVLCSCAHAE 339

Query: 327 LVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LVD+G+  F+ M    G++P ++HYG VVD+L RAGRL +A  ++  + +  +  ++++L
Sbjct: 340 LVDEGLEYFDKMEIEFGIEPRIEHYGCVVDMLSRAGRLDDAEKLIHEMPIVPNAAIYRSL 399

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           + AC ++G++E+ E    +L +   ++ G+ VL++NLYA   RW++  + RK MK+  + 
Sbjct: 400 IRACDIHGNLELGERMITELRQHDPDDSGNHVLIANLYARMNRWEEAKKTRKEMKSMGID 459

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K PG S +++ GV+H+F   DK+H   +EIY  ++EI  ++ E+G+ + T+ VL D+ EE
Sbjct: 460 KSPGSSLLDMNGVLHEFLVGDKTHPASKEIYTMVEEIEARLSEHGHRSSTTSVLFDVEEE 519

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           +K + L YHSE+LA+ F LI++   T I++ KNLR+C DCH+  KL+S+VY REI++RDR
Sbjct: 520 DKADTLTYHSERLAIPFALIASDPGTPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDR 579

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F++G CSC D+W
Sbjct: 580 TRFHHFREGECSCGDFW 596



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 125/254 (49%), Gaps = 17/254 (6%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAH-SSKPTNAVL--WYRQMLRGSHRSDALTCSFA 114
           +A    +F +I  P    +NA+L      +S   +A+L  + R +  G+ R + +T    
Sbjct: 171 IASCRRVFDRIACPDLPAWNALLSAYMRCASSAADAILELFSRMISLGTVRPNEITLVAV 230

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           + AC  + AL   +  H+++++     + ++ T L+++YA  G +  A+ VF     RD 
Sbjct: 231 IGACGELGALGHGVWAHTYLVKRQLAINRIVTTALVEMYAGCGRLDLAEHVFATASDRDT 290

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG----D 230
             +NA++ GLA       A+DLF RM+  GV   + VT+L  L +C H     EG    D
Sbjct: 291 RCYNAMLQGLAAHGHGRAALDLFDRMRGSGV-PVDGVTILSVLCSCAHAELVDEGLEYFD 349

Query: 231 KIH-EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
           K+  E+  E R++        V+DM ++ G LD A ++   +    +   + +++ A  +
Sbjct: 350 KMEIEFGIEPRIEHY----GCVVDMLSRAGRLDDAEKLIHEMPIVPNAAIYRSLIRACDI 405

Query: 290 HGDGPRALELFEQM 303
           HG+    LEL E+M
Sbjct: 406 HGN----LELGERM 415


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/508 (38%), Positives = 305/508 (60%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G +      +AV  + +M       +  T S  LK+ A + A+    QIH+  +
Sbjct: 353 WNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISI 412

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + G  +D  +  +LLD Y K   I  A K+F+E    D+ ++ ++I   +Q     EA+ 
Sbjct: 413 KSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALK 472

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           L+ +M+ +   KP+       L AC +L A+++G ++H +  +     ++   N++++MY
Sbjct: 473 LYLQMQ-DADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMY 531

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG ++ A   F  I  R  +V+W+ M+  +A HG G  AL LF QM R GV P+ ++ 
Sbjct: 532 AKCGSIEDADRAFSEIPNR-GIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITL 590

Query: 316 LAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           ++ LCACNHAGLV++G + F  M    G+KP  +HY  ++DLLGR+G+L EA ++V S+ 
Sbjct: 591 VSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIP 650

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
              D  +W  LLGA +++ ++E+ + A++ L ++     G  VLL+N+YA+   W++V +
Sbjct: 651 FEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAK 710

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VRK MK+  VKK PG S+IE+   ++ F   D+SH +  EIY KLD++   + + GY++ 
Sbjct: 711 VRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSI 770

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
               +H++ + EKE  L +HSEKLAVAFGLI+T     I+V KNLRIC DCH   K + K
Sbjct: 771 VEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCK 830

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +REIIVRD  RFH FKDG+CSC DYW
Sbjct: 831 IVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 176/371 (47%), Gaps = 7/371 (1%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           +L AHL   G   S+   +R+ ++  Y  S      YA  L  + +      ++++L G 
Sbjct: 2   ELHAHLIKFGF--SRDPSLRNHLVTLY--SKCRRFGYARKLVDESSELDVVSWSSLLSGY 57

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
             +     A+L + +M     + +  T    LKAC+    L    ++H   +  GF +D 
Sbjct: 58  VQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDG 117

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            +  TL+ +YAK G +  ++++F  +  R++ SWNAL +   Q  L  EAV LFK M   
Sbjct: 118 FVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRS 177

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           G+  PNE ++   L AC  L     G KIH  + +  LD++    NA++DMY+K G ++ 
Sbjct: 178 GIM-PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEG 236

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A  VF +I     +V+WN ++    +H     AL L ++M  +G +P+  +  +AL AC 
Sbjct: 237 AVAVFQDI-AHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACA 295

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
             G  + G +L +S+       ++     +VD+  +   + +A     S+    D++ W 
Sbjct: 296 AMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPK-KDIIAWN 354

Query: 384 TLLGACQLYGD 394
            L+      GD
Sbjct: 355 ALISGYSQCGD 365



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 169/341 (49%), Gaps = 3/341 (0%)

Query: 53  SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           S   E+  A A+F+ I  P    +NA++ G         A++   +M     R +  T S
Sbjct: 229 SKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLS 288

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
            ALKACA +       Q+HS +++    +D      L+D+Y+K   +  A++ +D M  +
Sbjct: 289 SALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKK 348

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           DI +WNALI+G +Q     +AV LF +M  E +   N+ T+   L +   L A K   +I
Sbjct: 349 DIIAWNALISGYSQCGDHLDAVSLFSKMFSEDI-DFNQTTLSTVLKSVASLQAIKVCKQI 407

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H    +  +  +  V N+++D Y KC  +D+A ++F+  +  + LV + +M+ A++ +GD
Sbjct: 408 HTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEE-RTWEDLVAYTSMITAYSQYGD 466

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
           G  AL+L+ QM  A +KPD     + L AC +    + G +L       G   ++    S
Sbjct: 467 GEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNS 526

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +V++  + G +++A D   S      +V W  ++G    +G
Sbjct: 527 LVNMYAKCGSIEDA-DRAFSEIPNRGIVSWSAMIGGYAQHG 566



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 134/265 (50%), Gaps = 3/265 (1%)

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
           +++H+H+++ GF  D  L   L+ +Y+K      A+K+ DE    D+ SW++L++G  Q 
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
               EA+ +F  M + GV K NE T    L AC        G K+H        + +  V
Sbjct: 61  GFVEEALLVFNEMCLLGV-KCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFV 119

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
            N ++ MYAKCGLLD +  +F  I   +++V+WN +   +        A+ LF++M R+G
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGI-VERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSG 178

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
           + P++ S    L AC      D G ++   M   G+  +     ++VD+  +AG ++ A 
Sbjct: 179 IMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAV 238

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLY 392
            + + ++   D+V W  ++  C L+
Sbjct: 239 AVFQDIAH-PDVVSWNAIIAGCVLH 262



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 118/253 (46%), Gaps = 13/253 (5%)

Query: 48  EFYALSPL-------NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML 100
           +FY ++ L       N +  A  +F +        + +++   +       A+  Y QM 
Sbjct: 419 DFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQ 478

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
               + D   CS  L ACA + A  +  Q+H H ++ GF+ D     +L+++YAK G I 
Sbjct: 479 DADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIE 538

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
            A + F E+  R I SW+A+I G AQ     EA+ LF +M  +GV  PN +T++  L AC
Sbjct: 539 DADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGV-PPNHITLVSVLCAC 597

Query: 221 GHLGAWKEGDKIHEYIREE---RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
            H G   EG +  E +      +       C  +ID+  + G L++A E+ ++I      
Sbjct: 598 NHAGLVNEGKQYFEKMEVMFGIKPTQEHYAC--MIDLLGRSGKLNEAVELVNSIPFEADG 655

Query: 278 VTWNTMVMAFAVH 290
             W  ++ A  +H
Sbjct: 656 FVWGALLGAARIH 668


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/486 (39%), Positives = 305/486 (62%), Gaps = 3/486 (0%)

Query: 98  QMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157
           +M++   + D++T    L    ++  L    ++H  + + GF ++ ++  TL+D+YAK G
Sbjct: 465 KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCG 524

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
           E+  + KVF+ M  RDI +WN +IA        +  + +  RM+ EGV  P+  T+L  L
Sbjct: 525 EMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGV-TPDMATMLSIL 583

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
             C  L A ++G +IH  I +  L+ +V V N +I+MY+KCG L  +F+VF  +K  K +
Sbjct: 584 PVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK-TKDV 642

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           VTW  ++ A  ++G+G +A+  F +M  AG+ PD V+++A + AC+H+GLV++G+  F+ 
Sbjct: 643 VTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHR 702

Query: 338 MA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
           M  +  ++P ++HY  VVDLL R+  L +A D + S+ +  D  +W  LL AC++ GD E
Sbjct: 703 MKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTE 762

Query: 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
           +A+  S +++E+  ++ G +VL+SN+YAA  +WD V  +RK++K R +KK PG S++E+ 
Sbjct: 763 IAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQ 822

Query: 457 GVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSE 516
             ++ F T  K   ++ E+ + L  +   + + GY A    VLHDI E+EK + LC HSE
Sbjct: 823 NKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSE 882

Query: 517 KLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
           +LA+AFGL++T   T +QV KNLR+C DCH V K ISK+  RE++VRD  RFH FKDGAC
Sbjct: 883 RLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGAC 942

Query: 577 SCKDYW 582
           SC DYW
Sbjct: 943 SCGDYW 948



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 225/467 (48%), Gaps = 48/467 (10%)

Query: 16  AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND 75
           A +   + +L + + T G   S +F   +K+I  YA     +   + ++FR + +PS N 
Sbjct: 85  AATTTQLHKLHSLIITLGLHHSVIFS--AKLIAKYA--HFRDPTSSFSVFR-LASPSNNV 139

Query: 76  F--NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH 133
           +  N+++R L H+   + A+  Y +  R   + D  T    + ACA +L       IH  
Sbjct: 140 YXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDR 199

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           VL  GF +D  +G  L+D+Y +  ++  A+KVF+EM +RD+ SWN+LI+G       +EA
Sbjct: 200 VLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 259

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253
           ++++ R +  GV  P+  T+   L ACG LG+ +EGD IH  I +  +  +V+V N ++ 
Sbjct: 260 LEIYYRFRNLGVV-PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLS 318

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313
           MY K   L     +FD +  R + V+WNTM+  ++  G    +++LF +M     KPD +
Sbjct: 319 MYCKFNGLIDGRRIFDKMVLRDA-VSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLL 376

Query: 314 SYLAALCACNHAG-----------LVDDGVR--------LFNSMANCG-------VKPNM 347
           +  + L AC H G           ++  G          L N  A CG       V   M
Sbjct: 377 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 436

Query: 348 K-----HYGSVVDLLGRAGRLQEACDIVK--SVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
           K      + S++++  + G   EA  + K     +  D V +  LL      GD+ + + 
Sbjct: 437 KCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKE 496

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG---RVRKAMKNRDV 444
               L +MG N+  + V+ + L   Y +  ++G   +V + MK RD+
Sbjct: 497 LHCDLAKMGFNS--NIVVSNTLVDMYAKCGEMGDSLKVFENMKARDI 541



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 8/294 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K+L   L   G F S +  V + +++ YA     E+  +  +F  + A     +N ++  
Sbjct: 495 KELHCDLAKMG-FNSNIV-VSNTLVDMYA--KCGEMGDSLKVFENMKARDIITWNTIIAS 550

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
             HS      +    +M       D  T    L  C+ + A  +  +IH  + + G  +D
Sbjct: 551 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD 610

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G  L+++Y+K G + ++ +VF  M  +D+ +W ALI+         +AV  F  M+ 
Sbjct: 611 VPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEA 670

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEG-DKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            G+  P+ V  +  + AC H G  +EG +  H   ++ +++  +     V+D+ ++  LL
Sbjct: 671 AGIV-PDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALL 729

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           DKA +   ++  +     W  ++ A  + GD   A  + E++    + PDD  Y
Sbjct: 730 DKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERI--IELNPDDTGY 781


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/442 (44%), Positives = 281/442 (63%), Gaps = 3/442 (0%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +  T ++   A  GE  +A+++FD M  RD  +WNA+IAG      + EA+ LF  M+
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
             G     EVT++ AL AC  LGA + G  +H       + ++V +  A+IDMY+KCG +
Sbjct: 327 HAGA-AVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAV 385

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
             A EVFD++  R ++ TW + V   A++G G   L LF++M   GV+P+ V+++  L  
Sbjct: 386 AAAMEVFDSMGER-NVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRG 444

Query: 322 CNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C+ AGLVD+G   F+SM +N G+ P ++HYG +VDL GRAGRL +A + +  + +     
Sbjct: 445 CSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEG 504

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +W  LL A +++ +VE+ + A  KL+ + S N    VLLSN+YA  + W  V  VR  MK
Sbjct: 505 VWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMK 564

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
            + VKKVPG S IEVGG +H+FF   K+H + +EI   L E+  +++  GY A T  VL 
Sbjct: 565 AKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLF 624

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           DI EE+KE+A+  HSEKLA+AFGL++  E   I++ KNLR+C DCHD  K+ISKV+NREI
Sbjct: 625 DIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREI 684

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           ++RDR RFH FKDGACSCKDYW
Sbjct: 685 VMRDRNRFHHFKDGACSCKDYW 706



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 2/241 (0%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           AL+   E   A  LF  +       +NA++ G  H+ +   A+  + +M         +T
Sbjct: 277 ALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVT 336

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
              AL ACA++ AL     +HS     G      LGT L+D+Y+K G + +A +VFD MG
Sbjct: 337 LVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMG 396

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            R++ +W + ++GLA   +  + + LFKRM+  GV +PN VT +  L  C   G   EG 
Sbjct: 397 ERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGV-EPNGVTFVVVLRGCSMAGLVDEGR 455

Query: 231 KIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
              + ++    +D  +     ++D+Y + G LD A    + +        W  ++ A  +
Sbjct: 456 ACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRI 515

Query: 290 H 290
           H
Sbjct: 516 H 516


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/578 (35%), Positives = 332/578 (57%), Gaps = 8/578 (1%)

Query: 6    ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            ++L+ CSS G   H+   Q+ A     G        V + +I+ Y+ S   ++  A  LF
Sbjct: 1012 SVLRACSSLGGGCHL-ATQIHACAMKAGVVLDSF--VSTTLIDVYSKS--GKMEEAEFLF 1066

Query: 66   RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
               +      +NA++ G   S     A+  Y  M     R++ +T + A KA   ++ L 
Sbjct: 1067 VNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLK 1126

Query: 126  ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
            +  QI + V++ GF  D  + + +LD+Y K GE+ SA+++F+E+   D  +W  +I+G  
Sbjct: 1127 QGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCV 1186

Query: 186  QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
            +      A+  +  M++  V +P+E T    + AC  L A ++G +IH    +     + 
Sbjct: 1187 ENGQEEHALFTYHHMRLSKV-QPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDP 1245

Query: 246  VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
             V  +++DMYAKCG ++ A  +F      + + +WN M++  A HG+   AL+ FE+M  
Sbjct: 1246 FVMTSLVDMYAKCGNIEDARGLFKRTNTSR-IASWNAMIVGLAQHGNAEEALQFFEEMKS 1304

Query: 306  AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQ 364
             GV PD V+++  L AC+H+GLV +    F SM    G++P ++HY  +VD L RAGR++
Sbjct: 1305 RGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIR 1364

Query: 365  EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
            EA  ++ S+       +++TLL AC++  D E  +  + KL+ +  ++   +VLLSN+YA
Sbjct: 1365 EAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYA 1424

Query: 425  AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
            A  +W++V   R  M+  +VKK PGFS++++   +H F   D+SH +   IY K++ IM 
Sbjct: 1425 AANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMK 1484

Query: 485  KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
            +I+E GY   T   L D+ EE+KE +L YHSEKLA+A+GL+ T  +T+++V KNLR+C D
Sbjct: 1485 RIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGD 1544

Query: 545  CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            CH+ IK ISKV+ RE+++RD  RFH F+ G CSC DYW
Sbjct: 1545 CHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 152/344 (44%), Gaps = 7/344 (2%)

Query: 59   AYAHALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
            AY   LF   +    +D   +N  L       +   AV  +  M+      D LT    L
Sbjct: 854  AYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVML 913

Query: 116  KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
               A +  L    QIH  V+R G      +G  L+++Y K G +  A+ VF +M   D+ 
Sbjct: 914  SVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLV 973

Query: 176  SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW-KEGDKIHE 234
            SWN +I+G A   L   +V +F  + + G   P++ TV   L AC  LG       +IH 
Sbjct: 974  SWNTMISGCALSGLEECSVGMFVDL-LRGGLLPDQFTVASVLRACSSLGGGCHLATQIHA 1032

Query: 235  YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
               +  + ++  V   +ID+Y+K G +++A  +F N +    L +WN M+  + V GD P
Sbjct: 1033 CAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVN-QDGFDLASWNAMMHGYIVSGDFP 1091

Query: 295  RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            +AL L+  M  +G + + ++   A  A      +  G ++   +   G   ++     V+
Sbjct: 1092 KALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVL 1151

Query: 355  DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            D+  + G ++ A  I   +    D V W T++  C   G  E A
Sbjct: 1152 DMYLKCGEMESARRIFNEIP-SPDDVAWTTMISGCVENGQEEHA 1194



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 155/375 (41%), Gaps = 38/375 (10%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTN----DFNA 78
           K+  A + T+G    +   + + +I  Y  S    L+ A  LF     P T+     +NA
Sbjct: 646 KRAHARILTSGHHPDRF--LTNNLITMY--SKCGSLSSARKLFD--TTPDTSRDLVTWNA 699

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           +L   AH+ K  +    +R + R    +   T +   K C    +      +H + ++ G
Sbjct: 700 ILS--AHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIG 757

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
              D  +   L+++YAK G I  A+ +FD MG+RD+  WN ++       L  EA+ LF 
Sbjct: 758 LQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFS 817

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
                G+ +P++VT+      C      K    + E+  ++            +  Y   
Sbjct: 818 EFNRTGL-RPDDVTL------CTLARVVKSKQNVLEWQLKQ------------LKAYGT- 857

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
               K F ++D+      ++ WN  +  F   G+   A++ F  M  + V  D ++++  
Sbjct: 858 ----KLF-MYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVM 912

Query: 319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
           L        ++ G ++   +   G+   +     ++++  + G +  A  +   ++   D
Sbjct: 913 LSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNE-VD 971

Query: 379 MVLWQTLLGACQLYG 393
           +V W T++  C L G
Sbjct: 972 LVSWNTMISGCALSG 986



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAF 287
           G + H  I       +  + N +I MY+KCG L  A ++FD      + LVTWN ++ A 
Sbjct: 645 GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSA- 703

Query: 288 AVHGDGPR-ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN 346
             H D  R    LF  + R+ V     +       C  +        L       G++ +
Sbjct: 704 --HADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWD 761

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +   G++V++  + GR++EA  +   + +  D+VLW  ++ A
Sbjct: 762 VFVAGALVNIYAKFGRIREARVLFDGMGL-RDVVLWNVMMKA 802


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/565 (37%), Positives = 312/565 (55%), Gaps = 28/565 (4%)

Query: 45  KIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH 104
           +++ F A  P +   YA  L      P    FN +   L          L     LR  H
Sbjct: 42  RLLSFLARDPDSHFPYASRLLAHHPDPHPALFNPLFSALPTRHAARLLALMLSLPLRPDH 101

Query: 105 RS--DALTCSFALKACARVLALFETLQIHSH----------------------VLRHGFL 140
            +    L  +  L   A++ AL   L  H+H                      V R G  
Sbjct: 102 FTFPQILPSAQPLHLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRVFRGGGG 161

Query: 141 A-DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
           A D +  TT++    K+G    A+ +FD M  R++ SWNA+++G  +     +A+++F  
Sbjct: 162 ALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDE 221

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+  GV   N      A+ AC   GA   G ++H ++ +  + M+  +  AV+DMY KCG
Sbjct: 222 MRARGV-DGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCG 280

Query: 260 LLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
            +++A+ VF+ +    K L TWN M+  FAVHG G  AL+LF +M R GV PDDV+ +  
Sbjct: 281 CVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNV 340

Query: 319 LCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           L AC HAG++ +G   FN +    G++P M+HYG +VDL GRAGRL+EA  +++ + M  
Sbjct: 341 LTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEP 400

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
           D+ +   L GA +++GDV++ E    +++E+   N G +VLL+NL A   RW+DV RVR+
Sbjct: 401 DVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRR 460

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            M  R+V K  G S IEV G + +F      H +  E+Y    ++M +I+  GY   T  
Sbjct: 461 LMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYVPDTRD 520

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           VLH I EEEKE  L YHSEKLA+AFGL+ T    ++++ KNLR+CRDCH+  K +S+V+ 
Sbjct: 521 VLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFE 580

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           R+I+VRDR RFH FKDG CSCKDYW
Sbjct: 581 RQIVVRDRNRFHHFKDGQCSCKDYW 605


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/442 (44%), Positives = 281/442 (63%), Gaps = 3/442 (0%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +  T ++   A  GE  +A+++FD M  RD  +WNA+IAG      + EA+ LF  M+
Sbjct: 260 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 319

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
             G     EVT++ AL AC  LGA + G  +H       + ++V +  A+IDMY+KCG +
Sbjct: 320 HAGA-AVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAV 378

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
             A EVFD++  R ++ TW + V   A++G G   L LF++M   GV+P+ V+++  L  
Sbjct: 379 AAAMEVFDSMGER-NVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRG 437

Query: 322 CNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C+ AGLVD+G   F+SM +N G+ P ++HYG +VDL GRAGRL +A + +  + +     
Sbjct: 438 CSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEG 497

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +W  LL A +++ +VE+ + A  KL+ + S N    VLLSN+YA  + W  V  VR  MK
Sbjct: 498 VWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMK 557

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
            + VKKVPG S IEVGG +H+FF   K+H + +EI   L E+  +++  GY A T  VL 
Sbjct: 558 AKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLF 617

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           DI EE+KE+A+  HSEKLA+AFGL++  E   I++ KNLR+C DCHD  K+ISKV+NREI
Sbjct: 618 DIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREI 677

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           ++RDR RFH FKDGACSCKDYW
Sbjct: 678 VMRDRNRFHHFKDGACSCKDYW 699



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 2/241 (0%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           AL+   E   A  LF  +       +NA++ G  H+ +   A+  + +M         +T
Sbjct: 270 ALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVT 329

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
              AL ACA++ AL     +HS     G      LGT L+D+Y+K G + +A +VFD MG
Sbjct: 330 LVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMG 389

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            R++ +W + ++GLA   +  + + LFKRM+  GV +PN VT +  L  C   G   EG 
Sbjct: 390 ERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGV-EPNGVTFVVVLRGCSMAGLVDEGR 448

Query: 231 KIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
              + ++    +D  +     ++D+Y + G LD A    + +        W  ++ A  +
Sbjct: 449 ACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRI 508

Query: 290 H 290
           H
Sbjct: 509 H 509


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/579 (35%), Positives = 344/579 (59%), Gaps = 11/579 (1%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL+KC+ + A+  +  K++ + L   G    +L  + + +IE Y       +A A ++F 
Sbjct: 30  LLKKCADSKAL--LEGKRVHSCLVKDGYASDRL--IANLLIEMYG--KCGGIAEARSVFD 83

Query: 67  QINAPSTN--DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           QI   + +   +N ++     +     A+  ++ M      ++ +T   A+ ACA + + 
Sbjct: 84  QIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSE 143

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
            E   +H+  +     +D ++GT+L++++ K   + +A+ VFD +  +++ +WN ++A  
Sbjct: 144 EEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVY 203

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           +Q     +A+ +F+ M +EGV +P+ VT L  + AC  L A  EG  +H+ I    + M+
Sbjct: 204 SQNWQCKKAIQVFRFMDLEGV-QPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMD 262

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           V +  AV+  Y KCG LD A  +FD++  +K+ VTW+ ++ A+A +G    A+EL+ +M 
Sbjct: 263 VALGTAVMHFYGKCGRLDNARAIFDSLG-KKNTVTWSAILAAYAQNGYETEAIELYHEMV 321

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRL 363
           + G++ + +++L  L AC+HAG   DGV  F SM  + GV P  +HY +++DLLGR+G+L
Sbjct: 322 QGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQL 381

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
           Q + D++ S+    D   W  LLGAC+++GDV+     +  + E+   + G ++LLSNLY
Sbjct: 382 QLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLY 441

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           ++  R D+  R RKAM+ R + K PG S IEV   +H+F  + K H +   I+ +++ + 
Sbjct: 442 SSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLK 501

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            ++KE GY A    VL D+ EEEKE  L YHSE+LA+AFGLIST   T++ + KNLR+C 
Sbjct: 502 ARVKEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCF 561

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH  +K ISKV  R+I+VRD +RFH F++GACSC DYW
Sbjct: 562 DCHAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 159/286 (55%), Gaps = 5/286 (1%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           R +  T    LK CA   AL E  ++HS +++ G+ +D L+   L+++Y K G I  A+ 
Sbjct: 21  REEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARS 80

Query: 165 VFDEMGVR--DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
           VFD++  +  D+ SWN +I    Q  L  EA+ LFK M +EGV   N+VT++ A+ AC  
Sbjct: 81  VFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVI-ANQVTLINAIDACAS 139

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           L + +EG  +H    ++RL+ + +V  ++++M+ KC  +D A  VFD++  RK+LVTWN 
Sbjct: 140 LPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLP-RKNLVTWNN 198

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           MV  ++ +    +A+++F  M   GV+PD V++L  + AC       +G  + + +   G
Sbjct: 199 MVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASG 258

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +  ++    +V+   G+ GRL  A  I  S+    + V W  +L A
Sbjct: 259 IPMDVALGTAVMHFYGKCGRLDNARAIFDSLGK-KNTVTWSAILAA 303


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/444 (40%), Positives = 291/444 (65%), Gaps = 3/444 (0%)

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
           + D +   T++  YA  GE+  A+++FD    RD  SW+++I+  A+   + EA++L++ 
Sbjct: 51  MRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWRE 110

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M    +  P+ +T++  ++AC  LGA   G ++H ++   R+++++ +  A+IDMYAKCG
Sbjct: 111 MHAASII-PDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCG 169

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            ++ A  VFD +   K + TW++M++  A HG G  +L LF +M   G+KP+ V+++  L
Sbjct: 170 DIESAQRVFDRMP-EKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVL 228

Query: 320 CACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
            AC H GLV +G + F SM    G++P ++HYG +VDLLGR+G ++EA  +++S++   D
Sbjct: 229 IACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPD 288

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
            ++W+ LLGAC+++ +VE+AE A  KL  +     G +VLLSN+YA    W+ V  +RK 
Sbjct: 289 TIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKT 348

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           ++  +++++PG S IE    IH+F + D+ H + +EIY  L+E+M ++K+ GY   T  V
Sbjct: 349 IRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLV 408

Query: 499 LHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNR 558
           L DI E+ KE +L  HSEKLA+AF L++T   ++I++ KNLR C DCH  +KLIS VY+R
Sbjct: 409 LQDIDEQSKERSLAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDR 468

Query: 559 EIIVRDRVRFHRFKDGACSCKDYW 582
           ++IVRDR RFH F +G CSCKDYW
Sbjct: 469 KLIVRDRNRFHHFSEGQCSCKDYW 492



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 127/246 (51%), Gaps = 4/246 (1%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +I  YA+    E+  A  +F          +++++   A S +   A+  +R+M   S  
Sbjct: 60  MIHGYAMR--GEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASII 117

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            D +T    + AC+ + AL    ++H  V  +    D  LGT L+D+YAK G+I SA++V
Sbjct: 118 PDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRV 177

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FD M  +D+ +W+++I GLA   L  E++ LF +M  EG+ KPN VT +G L AC H+G 
Sbjct: 178 FDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGM-KPNGVTFVGVLIACTHVGL 236

Query: 226 WKEGDKIHEYIRE-ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
             EG K    + E   ++  V     ++D+  + G +++A ++  ++      + W  ++
Sbjct: 237 VSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALL 296

Query: 285 MAFAVH 290
            A  +H
Sbjct: 297 GACRIH 302


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/561 (37%), Positives = 317/561 (56%), Gaps = 7/561 (1%)

Query: 23   KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
            +Q+ + +  T  FQ   + V S +I+ YA   L +L  A  +  +        +  ++ G
Sbjct: 470  EQIHSQIIKT-NFQLNAY-VCSVLIDMYA--KLGKLDTAWDILIRFAGKDVVSWTTMIAG 525

Query: 83   LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
                +    A+  +RQML    RSD +  + A+ ACA + AL E  QIH+     GF +D
Sbjct: 526  YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSD 585

Query: 143  ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
                  L+ +Y++ G+I  +   F++    D  +WNAL++G  Q     EA+ +F RM  
Sbjct: 586  LPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR 645

Query: 203  EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            EG+   N  T   A+ A       K+G ++H  I +   D    VCNA+I MYAKCG + 
Sbjct: 646  EGI-DNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 704

Query: 263  KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
             A + F  +   K+ V+WN ++ A++ HG G  AL+ F+QM  + V+P+ V+ +  L AC
Sbjct: 705  DAEKQFLEVST-KNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSAC 763

Query: 323  NHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
            +H GLVD G+  F SM +  G+ P  +HY  VVD+L RAG L  A + ++ + +  D ++
Sbjct: 764  SHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALV 823

Query: 382  WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
            W+TLL AC ++ ++E+ E A+  L+E+   +   +VLLSNLYA  ++WD     R+ MK 
Sbjct: 824  WRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKE 883

Query: 442  RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
            + VKK PG S+IEV   IH F+  D++H    EI+E   ++  +  E GY      +L++
Sbjct: 884  KGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNE 943

Query: 502  IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
            +  E+K+  +  HSEKLA++FGL+S      I V KNLR+C DCH  IK +SKV NREII
Sbjct: 944  LQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREII 1003

Query: 562  VRDRVRFHRFKDGACSCKDYW 582
            VRD  RFH F+ GACSCKDYW
Sbjct: 1004 VRDAYRFHHFEGGACSCKDYW 1024



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 208/424 (49%), Gaps = 10/424 (2%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
              + +L+ C   G+V+   ++Q+ A +   G   S +  V + +I+ Y+ +   +LA  
Sbjct: 147 GTFSGVLEACRG-GSVAFDVVEQIHARILYQGLRDSTV--VCNPLIDLYSRNGFVDLA-- 201

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             +F  +     + + A++ GL+ +     A+  +  M            S  L AC ++
Sbjct: 202 RRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKI 261

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
            +L    Q+H  VL+ GF +D  +   L+ +Y  +G ++SA+ +F  M  RD  ++N LI
Sbjct: 262 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 321

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            GL+Q     +A++LFKRM ++G+ +P+  T+   + AC   G    G ++H Y  +   
Sbjct: 322 NGLSQCGYGEKAMELFKRMHLDGL-EPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGF 380

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
             N  +  A++++YAKC  ++ A + F   +  +++V WN M++A+ +  D   +  +F 
Sbjct: 381 ASNNKIEGALLNLYAKCADIETALDYFLETEV-ENVVLWNVMLVAYGLLDDLRNSFRIFR 439

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           QM    + P+  +Y + L  C   G ++ G ++ + +     + N      ++D+  + G
Sbjct: 440 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG 499

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           +L  A DI+   + G D+V W T++     Y   + A    R++++ G  +  D V L+N
Sbjct: 500 KLDTAWDILIRFA-GKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS--DEVGLTN 556

Query: 422 LYAA 425
             +A
Sbjct: 557 AVSA 560



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 141/296 (47%), Gaps = 5/296 (1%)

Query: 105 RSDALTCSFALKACARVL-ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
           R +  T  + L+ C +   +L E  ++HS +L+ G  ++  L   L D Y   G++  A 
Sbjct: 41  RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAF 100

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC-GH 222
           KVFDEM  R I +WN +I  LA  NL  E   LF RM  E V  PNE T  G L AC G 
Sbjct: 101 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENV-TPNEGTFSGVLEACRGG 159

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
             A+   ++IH  I  + L  + VVCN +ID+Y++ G +D A  VFD ++  K   +W  
Sbjct: 160 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRL-KDHSSWVA 218

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           M+   + +     A+ LF  M   G+ P   ++ + L AC     ++ G +L   +   G
Sbjct: 219 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 278

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              +     ++V L    G L  A  I  ++S   D V + TL+      G  E A
Sbjct: 279 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQ-RDAVTYNTLINGLSQCGYGEKA 333


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/496 (39%), Positives = 305/496 (61%), Gaps = 10/496 (2%)

Query: 92  AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD 151
           A+L Y +ML           S ALKACA +  L+    +H+ V++     D ++   LL 
Sbjct: 14  ALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLR 73

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
           +Y +        KVFD+M  R++ASWN+LI+G  + +   EA+D+F+RM+ EG+   + V
Sbjct: 74  LYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGM-GFSWV 132

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T+   L  C  + A   G +IH  I +     +V+V N+++DMY KCG++D    +FD +
Sbjct: 133 TLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGM 192

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
           +  K L +WNTM+  +A++G    A++LF +M   G++PDDV+++A L  C+HAGL +DG
Sbjct: 193 R-SKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDG 251

Query: 332 VRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
            +LF+ M  + GV P+++HY  +VD+LGRAGR+  A  +VK++ M T   +W +LL +C+
Sbjct: 252 QKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCR 311

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
           L+ +V +AE  + +L E+   N G++V+LSN+YA    WD V  VR+ M+ R ++K  G 
Sbjct: 312 LHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMMQTRRIRKEAGC 371

Query: 451 SYIEVGGVIHKFFTSD----KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEE 506
           S+I+V   IH F        ++  ++++I+ KL E M   +E+GY   T  VLHD+ EE 
Sbjct: 372 SWIQVKNKIHSFVAGGGFEFRNSDEYKKIWNKLREAM---EEFGYIPNTDVVLHDVNEET 428

Query: 507 KENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRV 566
           K   +C HSE+LA  F LI T+    I++ KNLR+C DCH  IK++S+V  R I++RD  
Sbjct: 429 KAMWVCGHSERLATVFSLIHTAAGMPIRITKNLRVCVDCHSWIKIVSRVTGRVIVLRDTN 488

Query: 567 RFHRFKDGACSCKDYW 582
           RFH FK+GACSC DYW
Sbjct: 489 RFHHFKEGACSCNDYW 504



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 120/239 (50%), Gaps = 12/239 (5%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F Q+   +   +N+++ G     K   A+  +R+M R       +T +  L  CARV A
Sbjct: 87  VFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTA 146

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L    +IH+ +++     D L+  +L+D+Y K G +   +++FD M  +D+ SWN ++ G
Sbjct: 147 LLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTG 206

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            A       A+DLF  M   G+ +P++VT +  L+ C H G  ++G K+       R++M
Sbjct: 207 YAINGYMRVAMDLFNEMASCGI-RPDDVTFIALLSGCSHAGLTEDGQKLF-----HRMEM 260

Query: 244 NVVVCNA------VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           +  V  +      ++DM  + G +D A  V  N+  + S   W +++ +  +H + P A
Sbjct: 261 DFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLHNEVPLA 319


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/471 (40%), Positives = 289/471 (61%), Gaps = 5/471 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L++C    A+    Q+H+ V   GF  D ++ T L+++Y     + SA+ +FD +   +I
Sbjct: 82  LQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNI 141

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
             WN LI G A       AV L+ +M   G+  P+  T    L AC  L A + G +IHE
Sbjct: 142 FLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLV-PDNFTFPFVLKACAALSAIEHGREIHE 200

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL--VTWNTMVMAFAVHGD 292
           ++ +   + +V V  A+IDMYAKCG +  A EVFD I  R ++  V+WN M+  +A+HG 
Sbjct: 201 HVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGH 260

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYG 351
              AL+LFE+M R   KPD ++++  L AC+H GL+++G   F +M  +  + P ++HY 
Sbjct: 261 ATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYT 319

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +VDLLG +GRL EA +++  + +  D  +W  LL +C+++ +VE+ EIA  +L+E+  +
Sbjct: 320 CMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPD 379

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           + G++V+LSN+YA   +W+ V ++RK M +R +KK    S+IEV   +H F + D SH  
Sbjct: 380 DAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPL 439

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
             EIY +L+ +   +KE GY+  T  V HD+ ++EK N +C HSE+LA+AFGLIST   T
Sbjct: 440 SDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGT 499

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            + + KNLRIC DCH  IK ISK+  REI VRD  R+H FKDG CSC DYW
Sbjct: 500 RLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 550



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/319 (32%), Positives = 165/319 (51%), Gaps = 22/319 (6%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTG-QFQSKLFPVRSKIIEFYALSPLNELAY 60
           +N  +LLQ C +  A+     KQL A +   G  F +    + +K++  Y +   + L+ 
Sbjct: 76  SNYASLLQSCIARKAIKPG--KQLHAQVCLAGFGFDTV---IATKLVNLYCVC--DSLSS 128

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF +I   +   +N ++RG A +     AV  Y QM       D  T  F LKACA 
Sbjct: 129 ARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAA 188

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD---IASW 177
           + A+    +IH HV++ G+  D  +G  L+D+YAK G + SA++VFD++ VRD   + SW
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSW 248

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE-YI 236
           NA+I G A    A+EA+DLF+ M    V KP+ +T +G L+AC H G  +EG    E  I
Sbjct: 249 NAMITGYAMHGHATEALDLFEEMNR--VAKPDHITFVGVLSACSHGGLLEEGWMFFETMI 306

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD---G 293
           R+ ++D  V     ++D+    G LD+A+ +   +K       W  ++ +  +H +   G
Sbjct: 307 RDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELG 366

Query: 294 PRALELFEQMGRAGVKPDD 312
             ALE   ++     +PDD
Sbjct: 367 EIALERLIEL-----EPDD 380


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/537 (37%), Positives = 316/537 (58%), Gaps = 20/537 (3%)

Query: 65  FRQINAP-STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
            R+ N P     ++AV+ G A       A+  ++QM+      +++T    L ACA + A
Sbjct: 351 MRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGA 410

Query: 124 LFETLQIHSHVLRHGFLA------------DALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
           L + ++IH++ L+   L+            D ++   L+D+Y+K     +A+ +FD +  
Sbjct: 411 LSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPR 470

Query: 172 RD--IASWNALIAGLAQGNLASEAVDLFKRMKMEG-VFKPNEVTVLGALAACGHLGAWKE 228
           R+  + +W  +I G AQ   +++A+ +F  M  +     PN  T+   L AC HL A + 
Sbjct: 471 RERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRM 530

Query: 229 GDKIHEYI-REERLDMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
           G +IH Y+ R    + +V  V N +IDMY+KCG +D A  VFD++  +++ V+W +M+  
Sbjct: 531 GKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSG 589

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKP 345
           + +HG G  AL++F++M +AG  PDD+S+L  L AC+H+G+VD G+  F+ M  +  V  
Sbjct: 590 YGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVA 649

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
           + +HY  V+DLL R GRL +A   ++ + M    V+W  LL AC+++ +VE+AE A  KL
Sbjct: 650 SAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKL 709

Query: 406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTS 465
           V M + N G + L+SN+YA   RW DV R+R+ MK   +KK PG S+++       FF  
Sbjct: 710 VNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVG 769

Query: 466 DKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
           D+SH    EIY  L+ ++ +IK  GY   T+  LHD+ +EEK N L  HSEKLA+A+GL+
Sbjct: 770 DRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLL 829

Query: 526 STSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +TS    I++ KNLR+C DCH     ISK+ + EIIVRD  RFH FK+G+CSC  YW
Sbjct: 830 TTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 130/461 (28%), Positives = 203/461 (44%), Gaps = 107/461 (23%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTN 91
           F+S +F V + ++  Y  S    L  A  +F +I     +D   +N+++      S P  
Sbjct: 180 FESNVF-VCNALVAMY--SRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRT 236

Query: 92  AVLWYRQMLRGSH------RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           A+  + +M    H      RSD ++    L ACA + AL +  +IHS+ +R+G  ADA +
Sbjct: 237 ALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFV 296

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL------------------------- 180
              L+D YAK G +  A KVF+ M  +D+ SWNA+                         
Sbjct: 297 CNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENI 356

Query: 181 ----------IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
                     IAG AQ   + EA+D F++M ++G  +PN VT++  L+AC  LGA  +G 
Sbjct: 357 PLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGS-EPNSVTIISLLSACASLGALSQGM 415

Query: 231 KIHEYIREERL------------DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSL 277
           +IH Y  ++ L              +++V NA+IDMY+KC     A  +FD+I  R +++
Sbjct: 416 EIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNV 475

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYLAALCACNH----------- 324
           VTW  M+  +A +GD   AL++F +M      V P+  +    L AC H           
Sbjct: 476 VTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIH 535

Query: 325 --------------------------AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
                                      G VD    +F+SM     K N   + S++   G
Sbjct: 536 AYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP----KRNEVSWTSMMSGYG 591

Query: 359 RAGRLQEACDI---VKSVSMGTDMVLWQTLLGACQLYGDVE 396
             GR +EA DI   ++      D + +  LL AC   G V+
Sbjct: 592 MHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVD 632



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 139/280 (49%), Gaps = 9/280 (3%)

Query: 98  QMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157
           +MLR   + D  T  +ALKAC  + +      +H  +  +GF ++  +   L+ +Y++ G
Sbjct: 139 RMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCG 198

Query: 158 EIVSAKKVFDEM---GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK-PNE--- 210
            +  A  VFDE+   G+ D+ SWN+++A   +G+    A++LF  M M    K  NE   
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSD 258

Query: 211 -VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
            ++++  L AC  L A  +  +IH Y        +  VCNA+ID YAKCG ++ A +VF 
Sbjct: 259 IISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVF- 317

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
           N+   K +V+WN MV  +   G+   A ELFE M +  +  D +++ A +      G   
Sbjct: 318 NVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQ 377

Query: 330 DGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           + +  F  M   G +PN     S++      G L +  +I
Sbjct: 378 EALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEI 417



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 16/261 (6%)

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI-AGLAQGNLASEAVD 195
           H +++   LGT ++  Y   G    A  V + +       WN L+   + +G+L   A+ 
Sbjct: 77  HSYVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHL-DRAIG 135

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +  RM   G  KP+  T+  AL ACG L ++  G  +H  I     + NV VCNA++ MY
Sbjct: 136 VSCRMLRAGT-KPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMY 194

Query: 256 AKCGLLDKAFEVFDNIKCRKSL---VTWNTMVMAFAVHGDGPR-ALELFEQMGR------ 305
           ++CG L+ A  VFD I  RK +   ++WN++V A  V G  PR ALELF +M        
Sbjct: 195 SRCGSLEDASLVFDEIT-RKGIDDVISWNSIVAAH-VKGSNPRTALELFSEMSMIVHEKA 252

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
              + D +S +  L AC     +     + +     G   +     +++D   + G + +
Sbjct: 253 TNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMND 312

Query: 366 ACDIVKSVSMGTDMVLWQTLL 386
           A  +   +    D+V W  ++
Sbjct: 313 AVKVFNVMEF-KDVVSWNAMV 332


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/568 (37%), Positives = 324/568 (57%), Gaps = 40/568 (7%)

Query: 18  SHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQI--NAPSTND 75
           S   ++Q+ A +  T    S L   R  ++   A +P     YA  +F  +    P T  
Sbjct: 40  SPFELRQVHAQIIKTNAPLSILPLTRVGLV--CAFTP--SFHYAQQIFECVEKQKPETFV 95

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N+ L+ LA    P +A++ + ++ +     D  TCS  L+AC  +L L     +H  V 
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN----------------- 178
           + GF ++  L   ++ +YA  GE+  A+ +F++M  RD+ +WN                 
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 179 --------------ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
                         ++IAG  Q   A EA+ LF +M+  GV K NEVTV+  LAAC  LG
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGV-KCNEVTVVAVLAACADLG 274

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A   G +IHEY        NV + N +IDMY KCG L++A +VF+ ++  +++V+W+ M+
Sbjct: 275 ALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMI 333

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGV 343
              A+HG    AL LF  M + G++P+ V+++  L AC+H GL+ +G R F SM  + G+
Sbjct: 334 GGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGI 393

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
            P ++HYG +VDLL RAG L EA + + ++ M  + V+W  LLGAC+++ +VEMAE A +
Sbjct: 394 IPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIK 453

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
            L+E+   N G +V+LSN+YA   RW+D  RVRK MK+R VKK PG+S I V GV+H+F 
Sbjct: 454 HLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFV 513

Query: 464 TSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFG 523
             ++SH    +I+++ +E++ +++  GY   TS VL DI E EK   +  HSEKLA+ FG
Sbjct: 514 AGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFG 573

Query: 524 LISTSEATSIQVFKNLRICRDCHDVIKL 551
           L++T   T I++ KNLRIC DCH   ++
Sbjct: 574 LMNTPAETPIRIMKNLRICEDCHSAFQI 601


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/561 (37%), Positives = 317/561 (56%), Gaps = 7/561 (1%)

Query: 23   KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
            +Q+ + +  T  FQ   + V S +I+ YA   L +L  A  +  +        +  ++ G
Sbjct: 510  EQIHSQIIKT-NFQLNAY-VCSVLIDMYA--KLGKLDTAWDILIRFAGKDVVSWTTMIAG 565

Query: 83   LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
                +    A+  +RQML    RSD +  + A+ ACA + AL E  QIH+     GF +D
Sbjct: 566  YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSD 625

Query: 143  ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
                  L+ +Y++ G+I  +   F++    D  +WNAL++G  Q     EA+ +F RM  
Sbjct: 626  LPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR 685

Query: 203  EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            EG+   N  T   A+ A       K+G ++H  I +   D    VCNA+I MYAKCG + 
Sbjct: 686  EGI-DNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 744

Query: 263  KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
             A + F  +   K+ V+WN ++ A++ HG G  AL+ F+QM  + V+P+ V+ +  L AC
Sbjct: 745  DAEKQFLEVST-KNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSAC 803

Query: 323  NHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
            +H GLVD G+  F SM +  G+ P  +HY  VVD+L RAG L  A + ++ + +  D ++
Sbjct: 804  SHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALV 863

Query: 382  WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
            W+TLL AC ++ ++E+ E A+  L+E+   +   +VLLSNLYA  ++WD     R+ MK 
Sbjct: 864  WRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKE 923

Query: 442  RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
            + VKK PG S+IEV   IH F+  D++H    EI+E   ++  +  E GY      +L++
Sbjct: 924  KGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNE 983

Query: 502  IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
            +  E+K+  +  HSEKLA++FGL+S      I V KNLR+C DCH  IK +SKV NREII
Sbjct: 984  LQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREII 1043

Query: 562  VRDRVRFHRFKDGACSCKDYW 582
            VRD  RFH F+ GACSCKDYW
Sbjct: 1044 VRDAYRFHHFEGGACSCKDYW 1064



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 208/424 (49%), Gaps = 10/424 (2%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
              + +L+ C   G+V+   ++Q+ A +   G   S +  V + +I+ Y+ +   +LA  
Sbjct: 187 GTFSGVLEACRG-GSVAFDVVEQIHARILYQGLRDSTV--VCNPLIDLYSRNGFVDLA-- 241

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             +F  +     + + A++ GL+ +     A+  +  M            S  L AC ++
Sbjct: 242 RRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKI 301

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
            +L    Q+H  VL+ GF +D  +   L+ +Y  +G ++SA+ +F  M  RD  ++N LI
Sbjct: 302 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 361

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            GL+Q     +A++LFKRM ++G+ +P+  T+   + AC   G    G ++H Y  +   
Sbjct: 362 NGLSQCGYGEKAMELFKRMHLDGL-EPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGF 420

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
             N  +  A++++YAKC  ++ A + F   +  +++V WN M++A+ +  D   +  +F 
Sbjct: 421 ASNNKIEGALLNLYAKCADIETALDYFLETEV-ENVVLWNVMLVAYGLLDDLRNSFRIFR 479

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           QM    + P+  +Y + L  C   G ++ G ++ + +     + N      ++D+  + G
Sbjct: 480 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG 539

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           +L  A DI+   + G D+V W T++     Y   + A    R++++ G  +  D V L+N
Sbjct: 540 KLDTAWDILIRFA-GKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS--DEVGLTN 596

Query: 422 LYAA 425
             +A
Sbjct: 597 AVSA 600



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 141/296 (47%), Gaps = 5/296 (1%)

Query: 105 RSDALTCSFALKACARVL-ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
           R +  T  + L+ C +   +L E  ++HS +L+ G  ++  L   L D Y   G++  A 
Sbjct: 81  RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAF 140

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC-GH 222
           KVFDEM  R I +WN +I  LA  NL  E   LF RM  E V  PNE T  G L AC G 
Sbjct: 141 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENV-TPNEGTFSGVLEACRGG 199

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
             A+   ++IH  I  + L  + VVCN +ID+Y++ G +D A  VFD ++  K   +W  
Sbjct: 200 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRL-KDHSSWVA 258

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           M+   + +     A+ LF  M   G+ P   ++ + L AC     ++ G +L   +   G
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              +     ++V L    G L  A  I  ++S   D V + TL+      G  E A
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQ-RDAVTYNTLINGLSQCGYGEKA 373


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/582 (36%), Positives = 330/582 (56%), Gaps = 12/582 (2%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAH-LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           L+++LQ C+S GA+        Q H L     F  +LF V S + + Y  S   EL+ A 
Sbjct: 179 LSSVLQACTSLGAIQF----GTQVHCLVVKCGFGCELF-VGSNLTDMY--SKCGELSDAC 231

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
             F ++       + +++ G   +     A+  Y +M+      D       L AC+ + 
Sbjct: 232 KAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALK 291

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD-EMGVRDIASWNALI 181
           A      +H+ +L+ GF  +  +G  L D+Y+K G++VSA  VF        I S  A+I
Sbjct: 292 ASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAII 351

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            G  + +   +A+  F  ++  G+ +PNE T    + AC +    + G ++H  + +   
Sbjct: 352 DGYVEMDQIEKALSTFVDLRRRGI-EPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNF 410

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
             +  V + ++DMY KCGL D + ++FD I+     + WNT+V  F+ HG G  A+E F 
Sbjct: 411 KRDPFVSSTLVDMYGKCGLFDHSIQLFDEIE-NPDEIAWNTLVGVFSQHGLGRNAIETFN 469

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRA 360
            M   G+KP+ V+++  L  C+HAG+V+DG+  F+SM    GV P  +HY  V+DLLGRA
Sbjct: 470 GMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRA 529

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G+L+EA D + ++    ++  W + LGAC+++GD+E A+ A+ KL+++   N G  VLLS
Sbjct: 530 GKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLS 589

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA  ++W+DV  +RK +K+ ++ K+PG+S++++    H F   D SH + +EIYEKLD
Sbjct: 590 NIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLD 649

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
            ++ +IK  GY   T  VL D+ +  KE  L YHSE++AVAF L++      I V KNLR
Sbjct: 650 NLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLR 709

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +C DCH  +K ISKV  R IIVRD  RFH F +G+CSC DYW
Sbjct: 710 VCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 171/371 (46%), Gaps = 6/371 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQL A L   G   +    + +  +  Y  S   EL Y   LF +++  +   + +++ G
Sbjct: 95  KQLHAMLIRGGCLPNTF--LSNHFLNLY--SKCGELDYTIKLFDKMSQRNMVSWTSIITG 150

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            AH+S+   A+  + QM      +     S  L+AC  + A+    Q+H  V++ GF  +
Sbjct: 151 FAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCE 210

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G+ L D+Y+K GE+  A K F+EM  +D   W ++I G  +     +A+  + +M  
Sbjct: 211 LFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVT 270

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           + VF    V +   L+AC  L A   G  +H  I +   +    + NA+ DMY+K G + 
Sbjct: 271 DDVFIDQHV-LCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMV 329

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VF       S+V+   ++  +       +AL  F  + R G++P++ ++ + + AC
Sbjct: 330 SASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKAC 389

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
            +   ++ G +L   +     K +     ++VD+ G+ G    +  +   +    D + W
Sbjct: 390 ANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIE-NPDEIAW 448

Query: 383 QTLLGACQLYG 393
            TL+G    +G
Sbjct: 449 NTLVGVFSQHG 459



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 165/346 (47%), Gaps = 12/346 (3%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVL 122
           L ++  +PS   F  VL G+    +   +  + + +    H+ SD  T +  ++  AR  
Sbjct: 36  LLKEYFSPSNKHF--VLEGV----EEIISFSFLKNLFGSGHKLSDTKTVAHLIQTYARTK 89

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            L +  Q+H+ ++R G L +  L    L++Y+K GE+    K+FD+M  R++ SW ++I 
Sbjct: 90  ELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIIT 149

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G A  +   EA+  F +M++EG     +  +   L AC  LGA + G ++H  + +    
Sbjct: 150 GFAHNSRFQEALSSFCQMRIEGEI-ATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFG 208

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
             + V + + DMY+KCG L  A + F+ + C+ + V W +M+  F  +GD  +AL  + +
Sbjct: 209 CELFVGSNLTDMYSKCGELSDACKAFEEMPCKDA-VLWTSMIDGFVKNGDFKKALTAYMK 267

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M    V  D     + L AC+       G  L  ++   G +       ++ D+  ++G 
Sbjct: 268 MVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGD 327

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
           +  A ++ +   + +D +   +L      Y +++  E A    V++
Sbjct: 328 MVSASNVFQ---IHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDL 370


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 327/549 (59%), Gaps = 7/549 (1%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F+S L  V + +++ Y  S    ++ A  +F  ++  +   +N+++ G   S     A+L
Sbjct: 162 FES-LVNVSTALVDMY--SKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAML 218

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
            +++ML    +   +T   AL ACA +  L     +H  V +    +D  +  +L+ +Y+
Sbjct: 219 IFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYS 278

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K   +  A  +F  +  + + SWNA+I G AQ    +EA++ F  M+   + KP+  T++
Sbjct: 279 KCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNI-KPDSFTMV 337

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             + A   L   ++   IH  +    LD NV V  A++DMYAKCG +  A ++FD +  R
Sbjct: 338 SVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR 397

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
             ++TWN M+  +  HG G  ++ELF++M +  +KP+D+++L AL AC+H+GLV++G+  
Sbjct: 398 H-VITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCF 456

Query: 335 FNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           F SM  + G++P M HYG++VDLLGRAGRL +A D ++ + +   + ++  +LGAC+++ 
Sbjct: 457 FESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHK 516

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           +V++ E A+ ++ ++  ++ G  VLL+N+YA    W  V +VR  M+   ++K PG S +
Sbjct: 517 NVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLV 576

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           E+G  +H F++   SH + ++IY  L+ ++ +I+  GY   T+ + HD+ ++ K   L  
Sbjct: 577 EIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSI-HDVEDDVKVQLLNT 635

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEKLA+AFGL++TS  T I + KNLR+C DCH+  K IS V  REIIVRD  RFH FKD
Sbjct: 636 HSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKD 695

Query: 574 GACSCKDYW 582
           G CSC DYW
Sbjct: 696 GVCSCGDYW 704



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 173/319 (54%), Gaps = 8/319 (2%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           N   LL+ C  N  +     K++   + T+G F   LF + + ++  YA     ++  A+
Sbjct: 32  NFTYLLKLCGDNSDLKRG--KEIHGSVITSG-FSWNLFAM-TGVVNMYA--KCRQINDAY 85

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F ++       +N ++ G A +     A++   +M    HR D++T    L A A   
Sbjct: 86  NMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTR 145

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            L   + +H +VLR GF +   + T L+D+Y+K G +  A+ +FD M  R + SWN++I 
Sbjct: 146 LLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMID 205

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G  Q   A  A+ +F++M  EGV +P  VTV+GAL AC  LG  + G  +H+ + + +LD
Sbjct: 206 GYVQSGDAEGAMLIFQKMLDEGV-QPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLD 264

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            +V V N++I MY+KC  +D A ++F N++  K+LV+WN M++ +A +G    AL  F +
Sbjct: 265 SDVSVMNSLISMYSKCKRVDIAADIFKNLR-NKTLVSWNAMILGYAQNGCVNEALNAFCE 323

Query: 303 MGRAGVKPDDVSYLAALCA 321
           M    +KPD  + ++ + A
Sbjct: 324 MQSRNIKPDSFTMVSVIPA 342



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 158/308 (51%), Gaps = 3/308 (0%)

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           +L+G A SS   +A+ ++ +M   S R      ++ LK C     L    +IH  V+  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
           F  +    T ++++YAK  +I  A  +FD M  RD+  WN +I+G AQ   A  A+ L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
           RM  EG  +P+ +T++  L A       + G  +H Y+     +  V V  A++DMY+KC
Sbjct: 121 RMSEEG-HRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G +  A  +FD +  R ++V+WN+M+  +   GD   A+ +F++M   GV+P +V+ + A
Sbjct: 180 GSVSIARVIFDGMDHR-TVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGA 238

Query: 319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
           L AC   G ++ G  +   +    +  ++    S++ +  +  R+  A DI K++   T 
Sbjct: 239 LHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKT- 297

Query: 379 MVLWQTLL 386
           +V W  ++
Sbjct: 298 LVSWNAMI 305


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/567 (34%), Positives = 318/567 (56%), Gaps = 47/567 (8%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A   F +I       +N ++ G     +   A+  +R+M+    + +++T + A+ AC  
Sbjct: 165 ARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTN 224

Query: 121 VLALFETLQIHSHVLRHGFL-ADALLGTTLLDVYAKVGEIVSAKK--------------- 164
           +  L    +IH + ++   L +D L+G +L+D YAK   +  A++               
Sbjct: 225 LSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNA 284

Query: 165 ----------------------------VFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
                                       VF E+  RD+  WN++I+  AQ   +  A+DL
Sbjct: 285 MLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDL 344

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
            + M +  V + N VT++ AL AC  L A ++G +IH++I    LD    + N++IDMY 
Sbjct: 345 LREMNLSNV-EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYG 403

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           +CG + K+  +FD +  ++ LV+WN M+  + +HG G  A+ LF+Q    G+KP+ +++ 
Sbjct: 404 RCGSIQKSRRIFD-LMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFT 462

Query: 317 AALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
             L AC+H+GL+++G + F  M     + P ++ Y  +VDLL RAG+  E  + ++ +  
Sbjct: 463 NLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPF 522

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
             +  +W +LLGAC+++ + ++AE A+R L E+   + G++VL++N+Y+A  RW+D  ++
Sbjct: 523 EPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKI 582

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           R  MK R V K PG S+IEV   +H F   D SH    +I  K++ + F IKE GY   T
Sbjct: 583 RCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDT 642

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
           + VL D+ E+EKE +LC HSEK+A+AFGLIST+  T +++ KNLR+C DCH   K ISKV
Sbjct: 643 NFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKV 702

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
             R+II+RD  RFH F DG CSC DYW
Sbjct: 703 EKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 203/433 (46%), Gaps = 55/433 (12%)

Query: 6   ALLQKCSSNGAVSHIHIK-QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           ++LQKC     + ++ +  Q+ A L   G    +   + S+++E Y  +   E   A  +
Sbjct: 15  SILQKCRK---LYNLRLGFQVHAQLVVNGVDVCEF--LGSRLLEVYCQTGCVE--DARRM 67

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F +++  +   + A++            +  +  M+    R D        KAC+ +   
Sbjct: 68  FDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNY 127

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
                ++ ++L  GF  ++ +  ++LD++ K G +  A++ F+E+  +D+  WN +++G 
Sbjct: 128 RVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGY 187

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREERLDM 243
                  +A+++F++M +EGV KPN +T+  A++AC +L   + G +IH Y I+ E LD 
Sbjct: 188 TSKGEFKKALNVFRKMVLEGV-KPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDS 246

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM--VMAFAVHGDGPRALELFE 301
           +++V N+++D YAKC  ++ A   F  IK +  LV+WN M  V  F  +GDG  ALE F+
Sbjct: 247 DLLVGNSLVDYYAKCRSVEVARRKFGMIK-QTDLVSWNAMLAVTGFTQYGDGKAALEFFQ 305

Query: 302 QM----------------------------GR-------------AGVKPDDVSYLAALC 320
           +M                            GR             + V+ + V+ ++AL 
Sbjct: 306 RMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALP 365

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           AC+    +  G  +   +  CG+        S++D+ GR G +Q++  I   +    D+V
Sbjct: 366 ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQ-RDLV 424

Query: 381 LWQTLLGACQLYG 393
            W  ++    ++G
Sbjct: 425 SWNVMISVYGMHG 437



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 124/241 (51%), Gaps = 2/241 (0%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           AL     +  A ++F +++      +N+++   A S +  NA+   R+M   +   + +T
Sbjct: 300 ALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVT 359

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
              AL AC+++ AL +  +IH  ++R G      +  +L+D+Y + G I  ++++FD M 
Sbjct: 360 MVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP 419

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            RD+ SWN +I+         +AV+LF++ +  G+ KPN +T    L+AC H G  +EG 
Sbjct: 420 QRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL-KPNHITFTNLLSACSHSGLIEEGW 478

Query: 231 KIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
           K  + ++ E  +D  V     ++D+ ++ G  ++  E  + +    +   W +++ A  +
Sbjct: 479 KYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRI 538

Query: 290 H 290
           H
Sbjct: 539 H 539


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/494 (41%), Positives = 299/494 (60%), Gaps = 11/494 (2%)

Query: 94  LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153
           ++   +L+G    +  T S  LKACA +       Q+H   ++ G  A   +G  L+ VY
Sbjct: 352 MFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVY 411

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALI-AGLAQGNLASEAVDLFKRMKM--EGVFKPNE 210
           AK G + SA+K FD +  +++ S   +    +   NL SE  DL + ++    GV     
Sbjct: 412 AKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQ-DLDREVEYVGSGVSSFTY 470

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
            ++L   A  G +G   +G++IH  + +     ++ V NA+I MY+KCG  + A +VF++
Sbjct: 471 ASLLSGAACIGTIG---KGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFND 527

Query: 271 IK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
           ++ C  +++TW +++  FA HG   +ALELF  M   GVKP+DV+Y+A L AC+H GL+D
Sbjct: 528 MEDC--NVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLID 585

Query: 330 DGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +  + F SM  N G+ P M+HY  +VDLLGR+G L EA + + S+    D ++W+T LG+
Sbjct: 586 EAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGS 645

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448
           C+++ + ++ E A++ ++E   ++   ++LLSNLYA   RW+DV  +RK MK + + K  
Sbjct: 646 CRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEA 705

Query: 449 GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKE 508
           G S+IEV   +HKF   D  H K ++IYEKLDE+  KIK  GY   T  VLHD+ +E+KE
Sbjct: 706 GSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKE 765

Query: 509 NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
             L  HSEKLAVAF LIST     I+VFKNLR+C DCH  IK IS V  REI+VRD  RF
Sbjct: 766 QYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRF 825

Query: 569 HRFKDGACSCKDYW 582
           H  KDG CSC DYW
Sbjct: 826 HHMKDGTCSCNDYW 839



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 181/371 (48%), Gaps = 19/371 (5%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL++C       + H+ +L  H  TT         + S +I  Y+ S  N+   A ++F+
Sbjct: 58  LLKQCIR---TKNTHLGKLLHHKLTTSNLPLDTLLLNS-LITLYSKS--NDPITAFSIFQ 111

Query: 67  QINAPSTN--DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA-LKACARVLA 123
            +     +   +++++   A++     AV  + Q+L          C  A ++AC +   
Sbjct: 112 SMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKG-G 170

Query: 124 LFET-LQIHSHVLRHGFL-ADALLGTTLLDVYAK---VGEIVSAKKVFDEMGVRDIASWN 178
            F+T L +   VL+ G+  +   +G  L+D++ K   + ++ SA+KVFD+M  +++ +W 
Sbjct: 171 FFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWT 230

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
            +I  LAQ     EA+DLF  M +   + P+  T+ G ++ C  +     G ++H ++  
Sbjct: 231 LMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIR 290

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG--PRA 296
             L +++ V  +++DMYAKCGL+ +A +VFD ++   ++++W  +V  +   G G    A
Sbjct: 291 SGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMR-EHNVMSWTALVNGYVRGGGGYEREA 349

Query: 297 LELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           + +F  M  + GV P+  ++   L AC      D G ++       G+         +V 
Sbjct: 350 MRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVS 409

Query: 356 LLGRAGRLQEA 366
           +  ++GR++ A
Sbjct: 410 VYAKSGRMESA 420



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 131/271 (48%), Gaps = 8/271 (2%)

Query: 103 SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA 162
           +H +  +T S  LK C R         +H  +       D LL  +L+ +Y+K  + ++A
Sbjct: 47  THNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITA 106

Query: 163 KKVFDEM--GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
             +F  M    RD+ S++++I+  A      +AV++F ++ ++    PNE      + AC
Sbjct: 107 FSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRAC 166

Query: 221 GHLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAK-CGL--LDKAFEVFDNIKCRKS 276
              G +K G  +  ++ +    D +V V   +IDM+ K C L  L+ A +VFD ++  K+
Sbjct: 167 LKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMR-EKN 225

Query: 277 LVTWNTMVMAFAVHGDGPRALELF-EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
           +VTW  M+   A +G    A++LF E +  +G  PD  +    +  C     +  G  L 
Sbjct: 226 VVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELH 285

Query: 336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           + +   G+  ++    S+VD+  + G +QEA
Sbjct: 286 SWVIRSGLVLDLCVGCSLVDMYAKCGLVQEA 316


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 304/508 (59%), Gaps = 7/508 (1%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++ ++ G   + +P  A+  Y +M       D +     ++AC           +H  +L
Sbjct: 176 WSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLL 235

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           RH    D +  T+L+ +YAK G +  A +VF  M  R+  +W+ALI+G AQ   A EA+D
Sbjct: 236 RHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALD 295

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF+ ++ +G+ +P    ++ AL AC  +G  K G  IH +I   RL+   ++  AV+DMY
Sbjct: 296 LFRELQADGL-QPCSWALVSALLACASVGFLKLGKSIHGFILR-RLEWQCILGTAVLDMY 353

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCG L+ A ++F+ +  R  LV WN ++     HG G  AL LF+++   G+KPD  ++
Sbjct: 354 SKCGSLESARKLFNKLSSR-DLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATF 412

Query: 316 LAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            + L A +H+GLV++G   F+ M    G++P  KHY  +VDLL R+G ++EA D++ S+ 
Sbjct: 413 ASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQ 472

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
               + +W  LL  C     +E+ E  ++K++E+   + G   L+SNLYAA ++WD V  
Sbjct: 473 TEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVRE 532

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +RK MK+   KKVPG+S IEV G  H F   D+SH + REI + + ++  ++++ GY   
Sbjct: 533 IRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPR 592

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
           T  V HD+ E++    L YHSE+LA+AFGL++TS  T + + KNLR+C DCHD IK ISK
Sbjct: 593 TEFVYHDLDEDQ---LLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISK 649

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +REI+VRD  RFH FKDGACSC DYW
Sbjct: 650 IVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 158/318 (49%), Gaps = 5/318 (1%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N +L   + +  P  A+  +R  L  S R ++ T +  L ACAR+  L     +     
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRA-LPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             G+  D  + + LL +Y++ G +  A +VFD M  +D  +W+ ++AG        EA+ 
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           ++ RM+  GV   +EV ++G + AC   G  + G  +H  +    + M+VV   +++ MY
Sbjct: 195 MYSRMREHGV-SDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMY 253

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AK G LD A +VF  +  R   VTW+ ++  FA +G    AL+LF ++   G++P   + 
Sbjct: 254 AKNGHLDVACQVFRMMPYRND-VTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWAL 312

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           ++AL AC   G +  G  +   +    ++       +V+D+  + G L+ A  +   +S 
Sbjct: 313 VSALLACASVGFLKLGKSIHGFILR-RLEWQCILGTAVLDMYSKCGSLESARKLFNKLS- 370

Query: 376 GTDMVLWQTLLGACQLYG 393
             D+VLW  ++  C  +G
Sbjct: 371 SRDLVLWNAIIACCGTHG 388


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/577 (35%), Positives = 330/577 (57%), Gaps = 20/577 (3%)

Query: 5   NALLQKCSS-----NGAVSHIHIKQ-LQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNEL 58
           N LL+KC+       G + H HI Q +  H    G          + ++  YA      L
Sbjct: 64  NTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMG----------NTLLNMYA--KCGSL 111

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
             A  +F ++       +  ++ G +   +P +A+L++ QMLR  +  +  T S  +KA 
Sbjct: 112 EEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAA 171

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           A         Q+H   ++ GF ++  +G+ LLD+Y + G +  A+ VFD +  R+  SWN
Sbjct: 172 AAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWN 231

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ALIAG A+ +   +A++LF+ M  +G F+P+  +      AC   G  ++G  +H Y+ +
Sbjct: 232 ALIAGHARRSGTEKALELFQGMLRDG-FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
               +     N ++DMYAK G +  A ++FD +  ++ +V+WN+++ A+A HG G  A+ 
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQHGFGKEAVW 349

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
            FE+M R G++P+++S+L+ L AC+H+GL+D+G   +  M   G+ P   HY +VVDLLG
Sbjct: 350 WFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLG 409

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG L  A   ++ + +     +W+ LL AC+++ + E+   A+  + E+  ++ G  V+
Sbjct: 410 RAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVI 469

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           L N+YA+  RW+D  RVRK MK   VKK P  S++E+   IH F  +D+ H +  EI  K
Sbjct: 470 LYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARK 529

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
            +E++ KIKE GY   TS V+  + ++E+E  L YHSEK+A+AF L++T   ++I + KN
Sbjct: 530 WEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKN 589

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGA 575
           +R+C DCH  IKL SKV  REIIVRD  RFH FKD +
Sbjct: 590 IRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDAS 626


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 317/537 (59%), Gaps = 20/537 (3%)

Query: 65  FRQINAP-STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
            R+ N P     ++AV+ G A       A+  ++QM+      +++T    L ACA + A
Sbjct: 351 MRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGA 410

Query: 124 LFETLQIHSHVLRHGFLA------------DALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
           L + ++ H++ L+   L+            D ++   L+D+Y+K     +A+ +F+ +  
Sbjct: 411 LSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPR 470

Query: 172 RD--IASWNALIAGLAQGNLASEAVDLFKRMKMEG-VFKPNEVTVLGALAACGHLGAWKE 228
           R+  + +W  +I G AQ   +++A+ LF  M  +     PN  T+   L AC HL + + 
Sbjct: 471 RERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRM 530

Query: 229 GDKIHEYI-REERLDMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
           G +IH Y+ R    + +V  V N +IDMY+KCG +D A  VFD++  +++ V+W +M+  
Sbjct: 531 GKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSG 589

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKP 345
           + +HG G  AL++F++M +AG  PDD+S+L  L AC+H+G+VD G+  F+ M ++ GV  
Sbjct: 590 YGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIA 649

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
           + +HY  V+DLL R+GRL +A   ++ + M     +W  LL AC+++ +VE+AE A  KL
Sbjct: 650 SAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKL 709

Query: 406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTS 465
           V M + N G + L+SN+YA   RW DV R+R+ MK   +KK PG S+++       FF  
Sbjct: 710 VSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVG 769

Query: 466 DKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
           D+SH    EIY  L+ ++ +IK  GY   T+  LHD+ +EEK N L  HSEKLA+A+GL+
Sbjct: 770 DRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGLL 829

Query: 526 STSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +TS    I++ KNLR+C DCH     ISK+ + EIIVRD  RFH FK+G+CSC  YW
Sbjct: 830 TTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 198/460 (43%), Gaps = 105/460 (22%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTN 91
           F+S +F V + ++  Y+ S    L  A  +F +I     +D   +N+++      S P  
Sbjct: 180 FESNVF-VCNALVAMYSRS--GSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRT 236

Query: 92  AVLWYRQMLRGSH------RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           A+  + +M    H      RSD ++    L ACA + AL +T +IHS+ +R+G  ADA +
Sbjct: 237 ALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFV 296

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
              L+D YAK G +  A  VF+ M  +D+ SWNA++ G  Q      A +LFK M+ E +
Sbjct: 297 CNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENI 356

Query: 206 ----------------------------------FKPNEVTVLGALAACGHLGAWKEGDK 231
                                              +PN VT++  L+AC  LGA  +G +
Sbjct: 357 PLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGME 416

Query: 232 IHEYIREERL------------DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLV 278
            H Y  ++ L              ++VV NA+IDMY+KC     A  +F++I  R +++V
Sbjct: 417 THAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVV 476

Query: 279 TWNTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYLAALCACNH------------ 324
           TW  M+  +A +GD   AL+LF +M      V P+  +    L AC H            
Sbjct: 477 TWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHA 536

Query: 325 -------------------------AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
                                     G VD    +F+SM     K N   + S++   G 
Sbjct: 537 YVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMP----KRNEVSWTSMMSGYGM 592

Query: 360 AGRLQEACDI---VKSVSMGTDMVLWQTLLGACQLYGDVE 396
            GR +EA DI   ++      D + +  LL AC   G V+
Sbjct: 593 HGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVD 632



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 171/394 (43%), Gaps = 50/394 (12%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA-- 63
           +LL++C S   V  IH K +   L +   + + L  V        +L PL   +Y     
Sbjct: 36  SLLKECRSVNTVRQIHQKIIAYGLLS---YPASLLSV--------SLPPLPSHSYVSPKS 84

Query: 64  -----LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYR-------------------QM 99
                +   +   +T+D  +VL  +     P+ AV W                     +M
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVV----PSPAVWWNLLVRAHIEEGRLDRAIGVSCRM 140

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
           LR   + D  T  +ALKAC  + +       H  +  +GF ++  +   L+ +Y++ G +
Sbjct: 141 LRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSL 200

Query: 160 VSAKKVFDEM---GVRDIASWNALIAGLAQGNLASEAVDLFKRM-----KMEGVFKPNEV 211
             A  VFDE+   G+ D+ SWN+++A   +G+    A+DLF  M     +     + + +
Sbjct: 201 EDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDII 260

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           +++  L AC  L A  +  +IH Y        +  VCNA+ID YAKCG +  A  VF N+
Sbjct: 261 SIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVF-NV 319

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
              K +V+WN MV  +   G    A ELF+ M +  +  D +++ A +      G   + 
Sbjct: 320 MEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEA 379

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           +  F  M   G +PN     S++      G L +
Sbjct: 380 LDTFQQMILYGSEPNSVTIISLLSACASLGALSQ 413



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 122/261 (46%), Gaps = 16/261 (6%)

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI-AGLAQGNLASEAVD 195
           H +++   LGT ++  Y   G    A  V + +       WN L+ A + +G L   A+ 
Sbjct: 77  HSYVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRL-DRAIG 135

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +  RM   G  KP+  T+  AL ACG L +++ G   H  I     + NV VCNA++ MY
Sbjct: 136 VSCRMLRAGT-KPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMY 194

Query: 256 AKCGLLDKAFEVFDNIKCRKSL---VTWNTMVMAFAVHGDGPR-ALELFEQMGR------ 305
           ++ G L+ A  VFD I  RK +   ++WN++V A  V G  PR AL+LF +M        
Sbjct: 195 SRSGSLEDASLVFDEIT-RKGIDDVISWNSIVAAH-VKGSNPRTALDLFSEMTTIVHEKA 252

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
              + D +S +  L AC     +     + +     G   +     +++D   + G +++
Sbjct: 253 TNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKD 312

Query: 366 ACDIVKSVSMGTDMVLWQTLL 386
           A ++   +    D+V W  ++
Sbjct: 313 AVNVFNVMEF-KDVVSWNAMV 332


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/440 (41%), Positives = 281/440 (63%), Gaps = 3/440 (0%)

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
           L+   L+D+YAK G    A  VF++M  +D+ SW +L+ G        EA+ LF  M++ 
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           G+  P+++ +   L+AC  L   + G ++H    +  L  ++ V N+++ MYAKCG ++ 
Sbjct: 63  GI-HPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 121

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A +VFD+++  + ++TW  +++ +A +G G  +L  +  M  +GVKPD ++++  L AC+
Sbjct: 122 ANKVFDSMEI-QDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACS 180

Query: 324 HAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           HAGLV+ G   F SM    G+KP  +HY  ++DLLGR+G+L EA +++  +++  D  +W
Sbjct: 181 HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVW 240

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
           + LL AC+++G+VE+ E A+  L E+   N   +VLLSNLY+A  +W++  + R+ MK R
Sbjct: 241 KALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLR 300

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            V K PG S+IE+   +H+F + D+SH +  EIY K+DEIM  IKE GY    +  LHD+
Sbjct: 301 GVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDM 360

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            EE KE  L YHSEKLAVAFGL++      I++FKNLRIC DCH  +K +S V++R +I+
Sbjct: 361 DEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVIL 420

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD   FH F++GACSC DYW
Sbjct: 421 RDSNCFHHFREGACSCSDYW 440



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 126/267 (47%), Gaps = 12/267 (4%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +++ YA        YA  +F ++       + +++ G  H+     A+  + +M  
Sbjct: 4   VNNALVDMYA--KXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 61

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D +  +  L ACA +  L    Q+H++ L+ G  +   +  +L+ +YAK G I  
Sbjct: 62  MGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 121

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A KVFD M ++D+ +W ALI G AQ     E+++ +  M   GV KP+ +T +G L AC 
Sbjct: 122 ANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGV-KPDFITFIGLLFACS 180

Query: 222 HLGAWKEGDKIHEYIREE---RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           H G  + G    + + E    +       C  +ID+  + G L +A E+ + +  +    
Sbjct: 181 HAGLVEHGRSYFQSMEEVYGIKPGPEHYAC--MIDLLGRSGKLMEAKELLNQMAVQPDAT 238

Query: 279 TWNTMVMAFAVHGD---GPRAL-ELFE 301
            W  ++ A  VHG+   G RA   LFE
Sbjct: 239 VWKALLAACRVHGNVELGERAANNLFE 265


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/544 (38%), Positives = 309/544 (56%), Gaps = 40/544 (7%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N +L G   S     AV+ ++++       D +T S  L +      L     IH +V+
Sbjct: 220 WNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVI 279

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFD-----EMGV------------------- 171
           + G L D  + + ++D+Y K G +     +F+     E GV                   
Sbjct: 280 KQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALE 339

Query: 172 -----------RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
                       ++ SW ++IAG AQ     EA++LF+ M++ GV KPN VT+   L AC
Sbjct: 340 MFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGV-KPNHVTIPSMLPAC 398

Query: 221 GHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
           G++ A   G   H + +R   LD NV V +A+IDMYAKCG ++ +  VF N+   K+LV 
Sbjct: 399 GNIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLSQIVF-NMMPTKNLVC 456

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           WN+++  F++HG     + +FE + R  +KPD +S+ + L AC   GL D+G + F  M+
Sbjct: 457 WNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMS 516

Query: 340 N-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              G+KP ++HY  +V+LLGRAG+LQEA D++K +    D  +W  LL +C+L  +V++A
Sbjct: 517 EEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLA 576

Query: 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGV 458
           EIA+ KL  +   N G +VLLSN+YAA   W +V  +R  M++  +KK PG S+I+V   
Sbjct: 577 EIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNR 636

Query: 459 IHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKL 518
           ++     DKSH +  +I EK+DEI  ++++ G+       LHD+ E+E+E  L  HSEKL
Sbjct: 637 VYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKL 696

Query: 519 AVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSC 578
           AV FGL++T + T +QV KNLRIC DCH VIK IS    REI +RD  RFH FKDG CSC
Sbjct: 697 AVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSC 756

Query: 579 KDYW 582
            D+W
Sbjct: 757 GDFW 760



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 189/453 (41%), Gaps = 75/453 (16%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           + +K+I  Y  S  N    A  + + I  P+   F++++  L  +   T ++  + +M  
Sbjct: 52  ISAKLIASY--SNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFS 109

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D+       K CA + A     QIH      G   DA +  ++  +Y + G +  
Sbjct: 110 HGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGD 169

Query: 162 AKKVFDEMGVRD-----------------------------------IASWNALIAGLAQ 186
           A+KVFD M  +D                                   I SWN +++G  +
Sbjct: 170 ARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNR 229

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
                EAV +F+++   G F P++VTV   L + G       G  IH Y+ ++ L  +  
Sbjct: 230 SGYHKEAVVMFQKIHHLG-FCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKC 288

Query: 247 VCNAVIDMYAKC-------------------------------GLLDKAFEVFDNIKCRK 275
           V +A+IDMY K                                GL+DKA E+F+  K + 
Sbjct: 289 VISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQT 348

Query: 276 ---SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
              ++V+W +++   A +G    ALELF +M  AGVKP+ V+  + L AC +   +  G 
Sbjct: 349 MELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGR 408

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
                     +  N+    +++D+  + GR+  +  IV ++    ++V W +L+    ++
Sbjct: 409 STHGFAVRVHLLDNVHVGSALIDMYAKCGRINLS-QIVFNMMPTKNLVCWNSLMNGFSMH 467

Query: 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           G  +  E+ S     M +    DF+  ++L +A
Sbjct: 468 GKAK--EVMSIFESLMRTRLKPDFISFTSLLSA 498


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/536 (37%), Positives = 314/536 (58%), Gaps = 10/536 (1%)

Query: 51  ALSPLNELAYAHALFRQIN-APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL 109
           A S    +  A  LF++I    +   + A++ G   +     AV  + +M R   R +  
Sbjct: 339 AYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398

Query: 110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
           T S  L A    L +    ++H+ V++  +   + +GT LLD Y K+G++  A KVF  +
Sbjct: 399 TYSVILTA----LPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGI 454

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA-WKE 228
             +DI +W+A++AG AQ      A+ +F  +   G+ KPNE T    L  C    A   +
Sbjct: 455 DDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGI-KPNEFTFSSILNVCAATNASMGQ 513

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G + H +  + RLD ++ V +A++ MYAK G ++ A EVF   +  K LV+WN+M+  +A
Sbjct: 514 GKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR-EKDLVSWNSMISGYA 572

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNM 347
            HG   +AL++F++M +  VK D V+++    AC HAGLV++G + F+ M  +C + P  
Sbjct: 573 QHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTK 632

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
           +H   +VDL  RAG+L++A  +++++       +W+T+L AC+++   E+  +A+ K++ 
Sbjct: 633 EHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIA 692

Query: 408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDK 467
           M   +   +VLLSN+YA    W +  +VRK M  R+VKK PG+S+IEV    + F   D+
Sbjct: 693 MKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDR 752

Query: 468 SHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
           SH    +IY KL+++  ++K+ GY   TS VL DI +E KE  L  HSE+LA+AFGLI+T
Sbjct: 753 SHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIAT 812

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF-KDGACSCKDYW 582
            + + + + KNLR+C DCH VIKLI+K+  REI+VRD  RFH F  DG CSC D+W
Sbjct: 813 PKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 132/267 (49%), Gaps = 2/267 (0%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           + L  AH LF +        + ++L G +   +   A   +  + R     D    S  L
Sbjct: 41  SRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVL 100

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           K  A +       Q+H   ++ GFL D  +GT+L+D Y K       +KVFDEM  R++ 
Sbjct: 101 KVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVV 160

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           +W  LI+G A+ ++  E + LF RM+ EG  +PN  T   AL      G    G ++H  
Sbjct: 161 TWTTLISGYARNSMNDEVLTLFMRMQNEGT-QPNSFTFAAALGVLAEEGVGGRGLQVHTV 219

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           + +  LD  + V N++I++Y KCG + KA  +FD  +  KS+VTWN+M+  +A +G    
Sbjct: 220 VVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEV-KSVVTWNSMISGYAANGLDLE 278

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCAC 322
           AL +F  M    V+  + S+ + +  C
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLC 305


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/545 (37%), Positives = 326/545 (59%), Gaps = 17/545 (3%)

Query: 42  VRSKIIEFYALSPLNE-LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL-WYRQM 99
           V   +++ YA S + + + YA+ +F ++       + A++ G   S    N V+  + +M
Sbjct: 291 VSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEM 350

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
           L  S + + +T S  LKACA +       Q+H+HV++    A   +G  L+ +YA+ G +
Sbjct: 351 LNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCM 410

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD-LFKRMKMEGVFKPNEVTVLGALA 218
             A++VF+++  R      ++I+ + +G  A   +D    RM M G+      +++ A A
Sbjct: 411 EEARRVFNQLYER------SMISCITEGRDA--PLDHRIGRMDM-GISSSTFASLISAAA 461

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           + G L    +G ++H    +     +  V N+++ MY++CG L+ A   F+ +K R +++
Sbjct: 462 SVGML---TKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDR-NVI 517

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W +M+   A HG   RAL LF  M   GVKP+DV+Y+A L AC+H GLV +G   F SM
Sbjct: 518 SWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSM 577

Query: 339 A-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
             + G+ P M+HY  +VDLL R+G ++EA + +  + +  D ++W+TLLGAC+ + ++E+
Sbjct: 578 QRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEV 637

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
            EIA++ ++E+   +   +VLLSNLYA    WD+V R+R AM++ ++ K  G S++EV  
Sbjct: 638 GEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVEN 697

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
             H+F   D SH + ++IY KLD ++ +IK  GY   TS VLHD+ +E KE  L  HSEK
Sbjct: 698 TTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEK 757

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           +AVAFGLI+TS    I++FKNLR+C DCH  IK +SK   REII+RD  RFHR KDG CS
Sbjct: 758 IAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECS 817

Query: 578 CKDYW 582
           C +YW
Sbjct: 818 CGEYW 822



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 104/194 (53%), Gaps = 6/194 (3%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  +G+ L+D+ A+ G++ SA+KVFD +  + +  W  LI+   QG  A EAV++F    
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFL 246

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL- 260
            +G F+P+  T+   ++AC  LG+ + G ++H          +  V   ++DMYAK  + 
Sbjct: 247 EDG-FEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIE 305

Query: 261 --LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG-DGPRALELFEQMGRAGVKPDDVSYLA 317
             +D A +VF+ ++ +  +++W  ++  +   G    + + LF +M    +KP+ ++Y +
Sbjct: 306 QAMDYANKVFERMR-KNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSS 364

Query: 318 ALCACNHAGLVDDG 331
            L AC +    D G
Sbjct: 365 ILKACANISDHDSG 378



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 129/265 (48%), Gaps = 12/265 (4%)

Query: 130 IHSHVLRHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEM-GVRDIASWNALIAGLAQG 187
           +H  +LR   L  DA++  +LL +Y++ G + SA+ VFD M G+RDI SW A+ + LA+ 
Sbjct: 70  LHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARN 129

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC--GHLGAWKEGDKIHEYIREERLDMNV 245
               E++ L   M   G+  PN  T+     AC    L     G  +    +      ++
Sbjct: 130 GAERESLLLIGEMLESGLL-PNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDI 188

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD-GPRALELFEQMG 304
            V +A+IDM A+ G L  A +VFD +   K++V W T++++  V G+    A+E+F    
Sbjct: 189 AVGSALIDMLARNGDLASARKVFDGL-IEKTVVVW-TLLISRYVQGECAEEAVEIFLDFL 246

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
             G +PD  +  + + AC   G V  G++L +     G   +      +VD+  ++  ++
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSN-IE 305

Query: 365 EACDIVKSV---SMGTDMVLWQTLL 386
           +A D    V       D++ W  L+
Sbjct: 306 QAMDYANKVFERMRKNDVISWTALI 330



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 224 GAWKEGDKIHE-YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           G  + G  +H   +R + LD + VV N+++ +Y++CG +  A  VFD ++  + +V+W  
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325
           M    A +G    +L L  +M  +G+ P+  +    LCA  HA
Sbjct: 122 MASCLARNGAERESLLLIGEMLESGLLPNAYT----LCAVAHA 160


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/542 (35%), Positives = 320/542 (59%), Gaps = 4/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +++ Y  S L +   A  +F  + + S   +NA++ G   +     +   +R++++
Sbjct: 283 VLTSLVDMY--SNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQ 340

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D+ T    ++ C++   L     +HS ++R    +  +L T ++D+Y+K G I  
Sbjct: 341 SGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQ 400

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A  VF  MG +++ +W A++ GL+Q   A +A+ LF +M+ E V   N VT++  +  C 
Sbjct: 401 ATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKV-AANSVTLVSLVHCCA 459

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
           HLG+  +G  +H +        + V+ +A+IDMYAKCG +  A ++F+N    K ++  N
Sbjct: 460 HLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCN 519

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-N 340
           +M+M + +HG G  AL ++ +M    +KP+  ++++ L AC+H+GLV++G  LF+SM  +
Sbjct: 520 SMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERD 579

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             V+P  KHY  +VDL  RAGRL+EA ++VK +       + + LL  C+ + +  M   
Sbjct: 580 HDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQ 639

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
            + +L+ +   N G +V+LSN+YA   +W+ V  +R  M+ + +KK+PG+S IEVG  ++
Sbjct: 640 IADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVY 699

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            FF SD SH  W +IY+ L+ +  +++  GY   TSCVL D+ E  K   L  HSE+LA+
Sbjct: 700 TFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAI 759

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AFGL+ST   + I++ KNLR+C DCH+V K ISK+  REIIVRD  RFH F +G CSC D
Sbjct: 760 AFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCND 819

Query: 581 YW 582
           +W
Sbjct: 820 FW 821



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 185/371 (49%), Gaps = 15/371 (4%)

Query: 20  IHIKQLQAHL----TTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND 75
           IH+K + A +     +T  F      + +K+I  Y  S L  L +A  +F Q + P T  
Sbjct: 61  IHVKSIHAQIIKNWVSTESF------LAAKLIRVY--SDLGFLGHARNVFDQCSLPETAV 112

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
            NA++ G   + +       +R M       ++ TC FALKAC  +L     ++I    +
Sbjct: 113 CNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAV 172

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R GF     +G+++++   K G +  A+KVFD M  +D+  WN++I G  Q  L  E++ 
Sbjct: 173 RRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQ 232

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +F  M + G  +P+ VT+   L ACG  G  K G   H Y+    +  +V V  +++DMY
Sbjct: 233 MFLEM-IGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMY 291

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +  G    A  VFD++ C +SL++WN M+  +  +G  P +  LF ++ ++G   D  + 
Sbjct: 292 SNLGDTGSAALVFDSM-CSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTL 350

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           ++ +  C+    +++G  L + +    ++ ++    ++VD+  + G +++A  IV     
Sbjct: 351 VSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQA-TIVFGRMG 409

Query: 376 GTDMVLWQTLL 386
             +++ W  +L
Sbjct: 410 KKNVITWTAML 420



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 134/288 (46%), Gaps = 3/288 (1%)

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            L     IH+ ++++    ++ L   L+ VY+ +G +  A+ VFD+  + + A  NA+IA
Sbjct: 59  TLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIA 118

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G  +     E   LF+ M    + + N  T + AL AC  L   + G +I          
Sbjct: 119 GFLRNQQHMEVPRLFRMMGSCDI-EINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFH 177

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
           +++ V +++++   K G L  A +VFD +   K +V WN+++  +   G    ++++F +
Sbjct: 178 LHLYVGSSMVNFLVKRGYLADAQKVFDGMP-EKDVVCWNSIIGGYVQKGLFWESIQMFLE 236

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M   G++P  V+    L AC  +GL   G+   + +   G+  ++    S+VD+    G 
Sbjct: 237 MIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGD 296

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
              A  +  S+     ++ W  ++      G +  +    R+LV+ GS
Sbjct: 297 TGSAALVFDSMC-SRSLISWNAMISGYVQNGMIPESYALFRRLVQSGS 343


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/602 (35%), Positives = 336/602 (55%), Gaps = 46/602 (7%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTN--DFNAVL 80
           K+L A LTT+G  ++    + + + +FYA S   E+  A  LF +I     +  D+  +L
Sbjct: 26  KELHAVLTTSGLKKAPRSYLSNALFQFYASS--GEMVTAQKLFDEIPLSEKDNVDWTTLL 83

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
              +      N++  + +M R     D ++       CA++  L    Q H   ++ G L
Sbjct: 84  SSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVL 143

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDE-------------------------------M 169
               +   L+D+Y K G +   K++F+E                               M
Sbjct: 144 TSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEM 203

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
             R+  +W  ++AG        E ++L   M        N VT+   L+AC   G    G
Sbjct: 204 PERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVG 263

Query: 230 DKIHEYIREERLDM-------NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
             +H Y  ++ + M       +V+V  A++DMYAKCG +D +  VF  ++ ++++VTWN 
Sbjct: 264 RWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMR-KRNVVTWNA 322

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           +    A+HG G   +++F QM R  VKPDD+++ A L AC+H+G+VD+G R F+S+   G
Sbjct: 323 LFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRFYG 381

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           ++P + HY  +VDLLGRAG ++EA  +++ + +  + V+  +LLG+C ++G VE+AE   
Sbjct: 382 LEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIK 441

Query: 403 RKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKF 462
           R+L++M   N    +L+SN+Y A  R D    +R +++ R ++K+PG S I V   +H+F
Sbjct: 442 RELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRF 501

Query: 463 FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTS-CVLHDIGE-EEKENALCYHSEKLAV 520
            + D+SH + +EIY KL+E++ +I+  GY    S  V H  G+ EEKE ALC HSEKLAV
Sbjct: 502 SSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAV 561

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
            FGL+ T  +T + VFKNLRICRDCH  +K++SKVY+REII+RDR RFH+FK G+CSC D
Sbjct: 562 CFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSD 621

Query: 581 YW 582
           YW
Sbjct: 622 YW 623


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/524 (39%), Positives = 311/524 (59%), Gaps = 19/524 (3%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS-HRSDALTCSFALKACARVLALFETLQ 129
           P+T  +N  +R LAH  +P  AV  YR ML       +  T    L ACAR+L      +
Sbjct: 55  PTTFSYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPRE 114

Query: 130 ------IHSHVLRHGFLA-DALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNAL 180
                 +H+ + R G  + D  +  ++L  YA  G++ +A++VFD      RD+A WN+L
Sbjct: 115 AAAGTAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSL 174

Query: 181 I-AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           + A L+QG L +  + LF++M        +EVT+L  ++AC HLGA   G   H Y    
Sbjct: 175 LHAYLSQG-LYTHVLRLFRQM-----VATDEVTLLAVVSACSHLGALDTGRWAHAYHART 228

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
             +    +  A+++MY +CG ++ A+ VF  +   K + TW+ M+   AV+G    AL+L
Sbjct: 229 CRNTTRNLGTALLNMYMRCGDVESAWSVFHEM-LDKDVRTWSVMIAGLAVNGLPRDALKL 287

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLG 358
           F +M   GV PD ++  A L AC+HAG+VD+G    + M     ++P ++HYG VVDLLG
Sbjct: 288 FAEMKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLG 347

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG+L+EA  ++++V    D+ LW  LL AC+ + +V+M ++A+ +++++  ++ G  V 
Sbjct: 348 RAGQLEEALALIETVPFKADVALWGALLVACRAHKNVDMGQMAAMEILKLDPHHAGACVF 407

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN YAA  +WD V  VR +MK   + K PG S +E+ GV+++F + D SH +   IY  
Sbjct: 408 LSNAYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQSDRIYAM 467

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           LDE+   +   G+   T  V  DI EE+KE  +  HSEKLA+A GLIST     I++ KN
Sbjct: 468 LDEVCKTLSLKGHRPSTKEVAFDIDEEDKEVCISQHSEKLALALGLISTRRGAVIRIVKN 527

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRIC DCH V+K++S+VY+R I+VRDR RFH FK+G+CSC DYW
Sbjct: 528 LRICEDCHSVMKIVSEVYDRVIVVRDRNRFHHFKNGSCSCLDYW 571


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/545 (36%), Positives = 315/545 (57%), Gaps = 6/545 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQ 98
           V+S ++  Y+     +LA         N  + ND   +N+VL  L  S +   AV    +
Sbjct: 158 VKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGR 217

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           M+      D++T    +  C ++  L   LQ+H+ +L+ G   D  +G+ L+D++ K G+
Sbjct: 218 MVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGD 277

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           ++SA+KVFD +  R++  W +L+    Q     E ++L   M  EG    NE T    L 
Sbjct: 278 VLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTM-SNEFTFAVLLN 336

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           A   + A + GD +H  + +  +   V+V NA+I+MY+KCG +D +++VF +++ R  ++
Sbjct: 337 AFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNR-DII 395

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS- 337
           TWN M+  ++ HG G +AL LF+ M  AG  P+ V+++  L AC H  LV++G    N  
Sbjct: 396 TWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQL 455

Query: 338 MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
           M +  V+P ++HY  VV +L RAG L+EA + +++  +  D+V W+ LL AC ++ +  +
Sbjct: 456 MKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNL 515

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
               +  +++M   + G + LLSN+YA    WD V  +RK M+ R+VKK PG S+IE+  
Sbjct: 516 GTKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRN 575

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            +H F +   +H +  +IY K+  ++  IK+ GY      VLHD+ +E+KE+ L YHSEK
Sbjct: 576 AVHVFSSDGSNHPECIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVEDEQKESYLNYHSEK 635

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LA+A+GL+       I+V KNLRIC DCH  +KLISKV NR IIVRD  RFH F+DG C+
Sbjct: 636 LAIAYGLMKIPSPAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCT 695

Query: 578 CKDYW 582
           C D+W
Sbjct: 696 CTDHW 700



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 169/359 (47%), Gaps = 8/359 (2%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           ++L  A  LF +++  S   +N ++ G  HS +    V  ++ M+   ++ +    +  L
Sbjct: 69  SKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVL 128

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD-EMGV--- 171
            ACA    +FE +Q H  + + G +    + ++L+ +Y+K   +  A +V + E G    
Sbjct: 129 SACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDN 188

Query: 172 -RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
             D   +N+++  L +     EAV++  RM  EGV   + VT +  +  CG +     G 
Sbjct: 189 DNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVW-DSVTYVSVMGLCGQIRDLGLGL 247

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           ++H  + +  L  +V V + ++DM+ KCG +  A +VFD ++ R ++V W +++ A+  +
Sbjct: 248 QVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNR-NVVVWTSLMTAYLQN 306

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
           G+    L L   M R G   ++ ++   L A      +  G  L   +   G+K  +   
Sbjct: 307 GEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVG 366

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            +++++  + G +  + D+   +    D++ W  ++     +G  + A +  + ++  G
Sbjct: 367 NALINMYSKCGCIDSSYDVFFDMR-NRDIITWNAMICGYSQHGLGKQALLLFQDMLSAG 424



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 127/254 (50%), Gaps = 6/254 (2%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            +L+++Y K  ++  A+ +FDEM +R + S+N L+ G        E V LFK M +  ++
Sbjct: 59  NSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNM-VSSLY 117

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           +PNE      L+AC H G   EG + H ++ +  L  +  V ++++ MY+KC  +D A +
Sbjct: 118 QPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQ 177

Query: 267 VFD----NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
           V +    NI        +N+++ A    G    A+E+  +M   GV  D V+Y++ +  C
Sbjct: 178 VLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLC 237

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
                +  G+++   +   G+  ++     +VD+ G+ G +  A  +   +    ++V+W
Sbjct: 238 GQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQ-NRNVVVW 296

Query: 383 QTLLGACQLYGDVE 396
            +L+ A    G+ E
Sbjct: 297 TSLMTAYLQNGEFE 310



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 45/245 (18%)

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + N++  N++I++Y KC  L  A  +FD +  R S+V++N ++  +   G+    ++LF+
Sbjct: 52  EFNIIQLNSLINLYVKCSKLRLARYLFDEMSLR-SVVSYNVLMGGYLHSGEHLEVVKLFK 110

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG------VKPNMKH------ 349
            M  +  +P++  +   L AC H+G V +G++    +   G      VK ++ H      
Sbjct: 111 NMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCF 170

Query: 350 ------------------------YGSVVDLLGRAGRLQEACDIV-KSVSMGT--DMVLW 382
                                   Y SV++ L  +GRL EA +++ + V  G   D V +
Sbjct: 171 HVDLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTY 230

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK---AM 439
            +++G C    D+ +      +L++ G     D  + S L   + +  DV   RK    +
Sbjct: 231 VSVMGLCGQIRDLGLGLQVHAQLLKGGLT--FDVFVGSMLVDMFGKCGDVLSARKVFDGL 288

Query: 440 KNRDV 444
           +NR+V
Sbjct: 289 QNRNV 293


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/589 (36%), Positives = 338/589 (57%), Gaps = 50/589 (8%)

Query: 34  QFQSKLFPVRSKIIEFYAL----SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKP 89
           Q+   + P R+ +I + A+    + + +L  A   F  +   S   +NA+L G A +   
Sbjct: 183 QWLFDVMPERN-VITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLA 241

Query: 90  TNAVLWYRQMLRGSHRSDALTCSFALKACAR----VLALFETLQIHSHVLRHGFLADALL 145
              +  + +M+      D  T    + AC+      LA      +H   ++     +  +
Sbjct: 242 EEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQ----LNCFV 297

Query: 146 GTTLLDVYAKVGEIVSAKKVFDEMGV--------------------------------RD 173
            T LLD+YAK G I +A+++FDE+G                                 R+
Sbjct: 298 RTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRN 357

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           + +WN++IAG AQ   ++ A++LFK M       P+EVT++  ++ACGHLGA + G+ + 
Sbjct: 358 VVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVV 417

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            ++ E ++ +++   NA+I MY++CG ++ A  VF  +  R  +V++NT++  FA HG G
Sbjct: 418 RFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAHGHG 476

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             A+ L   M   G++PD V+++  L AC+HAGL+++G ++F S+ +    P + HY  +
Sbjct: 477 VEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD----PAIDHYACM 532

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VDLLGR G L++A   ++ + M     ++ +LL A +++  VE+ E+A+ KL E+  +N 
Sbjct: 533 VDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNS 592

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
           G+F+LLSN+YA+  RW DV R+R+AMK   VKK  G+S++E GG +HKF  +D+SH +  
Sbjct: 593 GNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSD 652

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           +IY+ L E+  K++E GY A  SCVL D+ EEEKE  +  HSEKLA+ + L+ +     I
Sbjct: 653 DIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVI 712

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +V KNLR+C DCH  IK+ISK+  R IIVRD  RFH F DG CSCKDYW
Sbjct: 713 RVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 147/341 (43%), Gaps = 48/341 (14%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           Y H LF     P+   F ++LR  +H       VL +  M     R DA      +K+  
Sbjct: 52  YTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAG 111

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG--VRDIASW 177
                   +  H+HVL+ G  +DA +   ++D+YA++G I  A+KVFDE+    R +A W
Sbjct: 112 N-----GGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADW 166

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NA+++G  +     +A  LF  M                                     
Sbjct: 167 NAMVSGYWKWESEGQAQWLFDVMP------------------------------------ 190

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
               + NV+   A++  YAK   L+ A   FD +  R S+V+WN M+  +A +G     L
Sbjct: 191 ----ERNVITWTAMVTGYAKVKDLEAARRYFDCMPER-SVVSWNAMLSGYAQNGLAEEVL 245

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
            LF++M  AG++PD+ +++  + AC+  G       L  ++    ++ N     +++D+ 
Sbjct: 246 RLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMY 305

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            + G +  A  I   +    + V W  ++ A    G+++ A
Sbjct: 306 AKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSA 346


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/570 (36%), Positives = 333/570 (58%), Gaps = 6/570 (1%)

Query: 14  NGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY-AHALFRQINAPS 72
           + A S   +K LQ H        S +  V + +I FY+ S   +L + +   F      S
Sbjct: 24  SSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKS---QLPFDSRRAFEDSPQKS 80

Query: 73  TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS 132
              +++++   A +  P  ++ + R+M+ GS R D      A K+C  +        +H 
Sbjct: 81  ATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHC 140

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
             ++ G+ AD  +G++L+D+YAK GEIV A+K+FDEM +R++ +W+ ++ G AQ     E
Sbjct: 141 LSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEE 200

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A+ LFK    E +   N+ +    ++ C +    + G +I     +   D +  V ++++
Sbjct: 201 ALWLFKEALFENL-AVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLV 259

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
            +Y+KCG L+ A++VFD +  R +L  WN M+ A A H    + +ELF++M  +G+KP+ 
Sbjct: 260 SLYSKCGDLEGAYQVFDEVPMR-NLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNF 318

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
           +++L  L AC+HAGLVD+G   F+ M    ++P  KHY S+VD+LGRAG+L+EA +IV +
Sbjct: 319 ITFLNVLNACSHAGLVDEGKYYFDLMKESRIEPTDKHYASLVDMLGRAGKLEEALEIVTN 378

Query: 373 VSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV 432
           + +     +W  LL +C ++ + E+A  A+ K+ E+G  + G  + LSN YAA  R++D 
Sbjct: 379 MPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDA 438

Query: 433 GRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYA 492
            + RK +++R  KK  G S++E    +H F   ++ H + +EIYEKL E+  ++++ GY 
Sbjct: 439 AKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEKAGYV 498

Query: 493 AGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLI 552
           A TS VL ++  +EK   + YHSE+LA+AFGLI+      I+V KNLR+C DCH+ IK +
Sbjct: 499 ADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFM 558

Query: 553 SKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           S    R IIVRD  RFHRF+DG CSC DYW
Sbjct: 559 SICTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 140/275 (50%), Gaps = 3/275 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L + AR  ++ + LQ+H ++++ G     L+   L++ Y+K      +++ F++   +  
Sbjct: 22  LLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSA 81

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            +W+++I+  AQ  L   +++  ++M M G  +P++  +  A  +CG L     G  +H 
Sbjct: 82  TTWSSIISCFAQNELPWMSLEFLRKM-MAGSLRPDDHVLPSATKSCGILSRCDIGKSVHC 140

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +   D +V V ++++DMYAKCG +  A ++FD +  R ++VTW+ M+  +A  G+  
Sbjct: 141 LSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLR-NVVTWSGMMYGYAQMGENE 199

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            AL LF++     +  +D S+   +  C ++ L++ G ++           +     S+V
Sbjct: 200 EALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLV 259

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
            L  + G L+ A  +   V M  ++ +W  +L AC
Sbjct: 260 SLYSKCGDLEGAYQVFDEVPM-RNLGIWNAMLKAC 293


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/542 (37%), Positives = 313/542 (57%), Gaps = 5/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           VR+ ++  Y  S  + +  A  ++ ++       +N++L  L  +      +   R M+ 
Sbjct: 170 VRNALVSMY--SKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVS 227

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
            S + D +T   A   CA +  L   L +H  +L      DA + + ++++Y K G+ + 
Sbjct: 228 ESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLM 287

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+ VFD +  R++  W A++A   Q     EA++LF +M+ E V K NE T    L AC 
Sbjct: 288 ARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENV-KSNEFTYAVLLNACA 346

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L A + G  +H +  +     +V+V NA+I+MYAK G ++ A +VF ++  R  ++TWN
Sbjct: 347 GLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHR-DIITWN 405

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR-LFNSMAN 340
            M+  F+ HG G +AL +F+ M  A   P+ V++   L AC H GLV +G   L + M  
Sbjct: 406 AMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQ 465

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            GV+P ++HY  +V LL + G+L EA + +++  +  D+V W+TLL AC ++ +  +   
Sbjct: 466 FGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRW 525

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
            +  ++EM  N+ G + LLSN+YA  +RWD V +VRK M+++ +KK PG S+IE+G V H
Sbjct: 526 VAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTH 585

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F + D  H  + + Y+K+ E++  IK  GY      VLHD+ +E+KE  L YHSEKLA+
Sbjct: 586 IFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHSEKLAI 645

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           A+GL+      SI V KNLRIC DCH  ++LISKV NR I+VRD  RFH F+DG CSC D
Sbjct: 646 AYGLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLD 705

Query: 581 YW 582
           YW
Sbjct: 706 YW 707



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 175/365 (47%), Gaps = 6/365 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K + +HL  T +         + +I FYA   +N+++ AH LF ++   +   ++A++ G
Sbjct: 49  KTIHSHLIVTSRATENSIIEVNSLINFYA--KVNQVSIAHNLFDRMPERNVVSWSALMTG 106

Query: 83  LAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
              +      +   + M+  G+   +    + A+ +C     + E  Q H  +L+ GF  
Sbjct: 107 YLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSF 166

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
              +   L+ +Y+K   +  A  V++E+ V DI ++N++++ L +     E +++ + M 
Sbjct: 167 HNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMV 226

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            E V K ++VT + A + C  L   + G  +H  +    ++ +  V +A+I+MY KCG  
Sbjct: 227 SESV-KWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKS 285

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
             A  VFD ++ R ++V W  ++ +   +G    AL LF +M +  VK ++ +Y   L A
Sbjct: 286 LMARGVFDGLQSR-NVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNA 344

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C       +G  L       G K ++    +++++  ++G + EA   V S  M  D++ 
Sbjct: 345 CAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDI-EAAKKVFSDMMHRDIIT 403

Query: 382 WQTLL 386
           W  ++
Sbjct: 404 WNAMI 408



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 134/284 (47%), Gaps = 2/284 (0%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L A  + L + +T+  H  V         +   +L++ YAKV ++  A  +FD M  R++
Sbjct: 38  LSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNV 97

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW+AL+ G      + + + L K M  EG   PNE  +  A+++C   G  +EG + H 
Sbjct: 98  VSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHG 157

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            + +     +  V NA++ MY+KC ++  A  V++ +     +V +N+++ +   +G   
Sbjct: 158 LLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPV-NDIVAYNSILSSLVENGYLR 216

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
             LE+   M    VK D V+++ A   C     +  G+ +   M    V+ +     +++
Sbjct: 217 EGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAII 276

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           ++ G+ G+   A  +   +    ++VLW  ++ +C   G  E A
Sbjct: 277 NMYGKCGKSLMARGVFDGLQ-SRNVVLWTAVMASCFQNGCFEEA 319


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/569 (36%), Positives = 333/569 (58%), Gaps = 14/569 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQI--NAPSTNDFNAVL 80
           +++ A++    +  +  F V S +++ YA     ++  A  +F  +  +      +NA++
Sbjct: 293 REMHAYVIKDDELAANSF-VASALVDMYATH--EQVGKARQVFDMVPDSGKQLGMWNAMI 349

Query: 81  RGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
            G A +     A+ L+ R            T +  L ACAR  A      +H +V++ G 
Sbjct: 350 CGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGM 409

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG-LAQGNLASEAVDLFK 198
             +  +   L+D+YA++G+   A+++F  + + D+ SWN LI G + QG++A +A  L +
Sbjct: 410 AGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVA-DAFQLAR 468

Query: 199 RMKM--EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
            M+   EG   PN +T++  L  C  L A   G +IH Y     LD +V V +A++DMYA
Sbjct: 469 EMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYA 528

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSY 315
           KCG L  +  VFD +  R++ +TWN ++MA+ +HG G  A  LF++M  +G  +P++V++
Sbjct: 529 KCGCLALSRAVFDRLP-RRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTF 587

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +AAL AC+H+G+VD G++LF++M  + GV+P       VVD+LGRAGRL EA  +V S+ 
Sbjct: 588 MAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSME 647

Query: 375 MGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
            G   V  W T+LGAC+L+ +V + EIA  +L+E+       +VLL N+Y+A  +W    
Sbjct: 648 TGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAA 707

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA 493
            VR  M+ R V K PG S+IEV G IH+F   + +H    E++  ++ +  ++   GY  
Sbjct: 708 EVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTP 767

Query: 494 GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
            TSCVLHD+ + +K   L  HSEKLA+AFGL+  +   +I+V KNLR+C DCH+  K +S
Sbjct: 768 DTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLS 827

Query: 554 KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K+  REI++RD  RFH F++G CSC DYW
Sbjct: 828 KMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 166/355 (46%), Gaps = 8/355 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++  L  S     AV     M+    R D +T + AL AC+R+  L    ++H++V+
Sbjct: 241 WNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVI 300

Query: 136 RHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEM--GVRDIASWNALIAGLAQGNLASE 192
           +   L A++ + + L+D+YA   ++  A++VFD +    + +  WNA+I G AQ  +  E
Sbjct: 301 KDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEE 360

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A+ LF RM+ E  F P E T+   L AC    A+   + +H Y+ +  +  N  V NA++
Sbjct: 361 ALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALM 420

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL---FEQMGRAGVK 309
           DMYA+ G  D A  +F  +     +V+WNT++    V G    A +L    +Q+   GV 
Sbjct: 421 DMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVV 479

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           P+ ++ +  L  C        G  +        +  ++    ++VD+  + G L  +  +
Sbjct: 480 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 539

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
              +    + + W  L+ A  ++G    A +   ++   G     +   ++ L A
Sbjct: 540 FDRLPR-RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAA 593



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 171/366 (46%), Gaps = 15/366 (4%)

Query: 56  NELAYAHALFRQIN--APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF 113
             LA A  +F  I+  A     FN+++  L    +  +A+   R ML G H   + T   
Sbjct: 110 GRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVS 169

Query: 114 ALKACARVLALFETLQI----HSHVLRHGFL--ADALLGTTLLDVYAKVGEIVSAKKVF- 166
            L+A + + A    +++    H+  L++G L          LL +YA++G +  A+++F 
Sbjct: 170 VLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFA 229

Query: 167 -DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
               G  D+ +WN +++ L Q  +  EAV     M   GV +P+ VT   AL AC  L  
Sbjct: 230 GATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGV-RPDGVTFASALPACSRLEL 288

Query: 226 WKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTM 283
              G ++H Y I+++ L  N  V +A++DMYA    + KA +VFD +    K L  WN M
Sbjct: 289 LDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAM 348

Query: 284 VMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           +  +A  G    AL LF +M   AG  P + +  + L AC  +        +   +   G
Sbjct: 349 ICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRG 408

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           +  N     +++D+  R G+   A  I   V +  D+V W TL+  C + G V  A   +
Sbjct: 409 MAGNRFVQNALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLA 467

Query: 403 RKLVEM 408
           R++ ++
Sbjct: 468 REMQQL 473



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 137/325 (42%), Gaps = 37/325 (11%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFL--ADALLGTTLLDVYAKVGEIVSAKKVFDEMG- 170
           A+K+ A +        IH+  LR G L      +   LL  YA+ G + +A +VF  +  
Sbjct: 65  AIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISD 124

Query: 171 -VRDIASWNALIAGLAQGNLASEAVDLFKR---------MKMEGVFKPNEVTVLGALAAC 220
              D  S+N+LI+ L           LF+R           + G       T++  L A 
Sbjct: 125 SAHDAVSFNSLISALC----------LFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAV 174

Query: 221 GHL----GAWKEGDKIHEYIREERL--DMNVVVCNAVIDMYAKCGLLDKAFEVFDN-IKC 273
            HL     A + G + H +  +  L         NA++ MYA+ GL+  A  +F      
Sbjct: 175 SHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPG 234

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
           R  +VTWNTMV      G    A++    M   GV+PD V++ +AL AC+   L+D G  
Sbjct: 235 RGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGRE 294

Query: 334 LFN-SMANCGVKPNMKHYGSVVDLLG---RAGRLQEACDIVKSVSMGTDMVLWQTLL-GA 388
           +    + +  +  N     ++VD+     + G+ ++  D+V     G  + +W  ++ G 
Sbjct: 295 MHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDS--GKQLGMWNAMICGY 352

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNC 413
            Q   D E   + +R   E G   C
Sbjct: 353 AQAGMDEEALRLFARMEAEAGFVPC 377


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/549 (38%), Positives = 313/549 (57%), Gaps = 40/549 (7%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           P+   +N +L G   S     AV+ +++M       D +T S  L +      L    QI
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQI 274

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM------------------GVR 172
           H +V++ G L D  + + +LD+Y K G +    K+FDE                   G+ 
Sbjct: 275 HGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334

Query: 173 D-----------------IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG 215
           D                 + SW ++IAG AQ     EA++LF+ M++ GV KPN VT+  
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGV-KPNRVTIPS 393

Query: 216 ALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
            L ACG++ A   G   H + +R   LD +V V +A+IDMYAKCG +  +  VF N+   
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLLD-DVHVGSALIDMYAKCGRIKMSQIVF-NMMPT 451

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           K+LV WN+++  +++HG     + +FE + R  +KPD +S+ + L AC   GL D+G + 
Sbjct: 452 KNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKY 511

Query: 335 FNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           FN M+   G+KP ++HY  +V+LLGRAG+LQEA D++K +    D  +W  LL +C+L  
Sbjct: 512 FNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQN 571

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           +V++AEIA++KL  +   N G +VL+SN+YAA   W +V  +R  M++  +KK PG S+I
Sbjct: 572 NVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           +V   ++     DKSH +  +I EK+DEI  ++++ G+       L D+ E+E+E  L  
Sbjct: 632 QVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWG 691

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEKLAV FGL++T + T +QV KNLRIC DCH VIK IS    REI +RD  RFH FKD
Sbjct: 692 HSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKD 751

Query: 574 GACSCKDYW 582
           G CSC D+W
Sbjct: 752 GICSCGDFW 760



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 190/453 (41%), Gaps = 75/453 (16%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           + +K+I  Y  S  N    A  + + I  P+   F++++  L  +   + ++  + +M  
Sbjct: 52  ISAKLIASY--SNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFS 109

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D        K CA + A     QIH      G   DA +  +L  +Y + G +  
Sbjct: 110 HGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGD 169

Query: 162 AKKVFDEMGVRD-----------------------------------IASWNALIAGLAQ 186
           A+KVFD M  +D                                   I SWN +++G  +
Sbjct: 170 ARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNR 229

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
                EAV +F++M   G F P++VTV   L + G       G +IH Y+ ++ L  +  
Sbjct: 230 SGYHKEAVIMFQKMHHLG-FCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKC 288

Query: 247 VCNAVIDMYAKCG-------------------------------LLDKAFEVFDNIKCRK 275
           V +A++DMY K G                               L+DKA E+F   K +K
Sbjct: 289 VISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQK 348

Query: 276 ---SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
              ++V+W +++   A +G    ALELF +M  AGVKP+ V+  + L AC +   +  G 
Sbjct: 349 MELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGR 408

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
                     +  ++    +++D+  + GR++ +  IV ++    ++V W +L+    ++
Sbjct: 409 STHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMS-QIVFNMMPTKNLVCWNSLMNGYSMH 467

Query: 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           G  +  E+ S     M +    DF+  ++L +A
Sbjct: 468 GKAK--EVMSIFESLMRTRLKPDFISFTSLLSA 498


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/569 (36%), Positives = 333/569 (58%), Gaps = 14/569 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQI--NAPSTNDFNAVL 80
           +++ A++    +  +  F V S +++ YA     ++  A  +F  +  +      +NA++
Sbjct: 291 REMHAYVIKDDELAANSF-VASALVDMYATH--EQVGKARQVFDMVPDSGKQLGMWNAMI 347

Query: 81  RGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
            G A +     A+ L+ R            T +  L ACAR  A      +H +V++ G 
Sbjct: 348 CGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGM 407

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG-LAQGNLASEAVDLFK 198
             +  +   L+D+YA++G+   A+++F  + + D+ SWN LI G + QG++A +A  L +
Sbjct: 408 AGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVA-DAFQLAR 466

Query: 199 RMKM--EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
            M+   EG   PN +T++  L  C  L A   G +IH Y     LD +V V +A++DMYA
Sbjct: 467 EMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYA 526

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSY 315
           KCG L  +  VFD +  R++ +TWN ++MA+ +HG G  A  LF++M  +G  +P++V++
Sbjct: 527 KCGCLALSRAVFDRLP-RRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTF 585

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +AAL AC+H+G+VD G++LF++M  + GV+P       VVD+LGRAGRL EA  +V S+ 
Sbjct: 586 MAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSME 645

Query: 375 MGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
            G   V  W T+LGAC+L+ +V + EIA  +L+E+       +VLL N+Y+A  +W    
Sbjct: 646 TGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAA 705

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA 493
            VR  M+ R V K PG S+IEV G IH+F   + +H    E++  ++ +  ++   GY  
Sbjct: 706 EVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTP 765

Query: 494 GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
            TSCVLHD+ + +K   L  HSEKLA+AFGL+  +   +I+V KNLR+C DCH+  K +S
Sbjct: 766 DTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLS 825

Query: 554 KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K+  REI++RD  RFH F++G CSC DYW
Sbjct: 826 KMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 166/355 (46%), Gaps = 8/355 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++  L  S     AV     M+    R D +T + AL AC+R+  L    ++H++V+
Sbjct: 239 WNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVI 298

Query: 136 RHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEM--GVRDIASWNALIAGLAQGNLASE 192
           +   L A++ + + L+D+YA   ++  A++VFD +    + +  WNA+I G AQ  +  E
Sbjct: 299 KDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEE 358

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A+ LF RM+ E  F P E T+   L AC    A+   + +H Y+ +  +  N  V NA++
Sbjct: 359 ALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALM 418

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL---FEQMGRAGVK 309
           DMYA+ G  D A  +F  +     +V+WNT++    V G    A +L    +Q+   GV 
Sbjct: 419 DMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVV 477

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           P+ ++ +  L  C        G  +        +  ++    ++VD+  + G L  +  +
Sbjct: 478 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 537

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
              +    + + W  L+ A  ++G    A +   ++   G     +   ++ L A
Sbjct: 538 FDRLPR-RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAA 591



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 171/366 (46%), Gaps = 15/366 (4%)

Query: 56  NELAYAHALFRQIN--APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF 113
             LA A  +F  I+  A     FN+++  L    +  +A+   R ML G H   + T   
Sbjct: 108 GRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVS 167

Query: 114 ALKACARVLALFETLQI----HSHVLRHGFL--ADALLGTTLLDVYAKVGEIVSAKKVF- 166
            L+A + + A    +++    H+  L++G L          LL +YA++G +  A+++F 
Sbjct: 168 VLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFA 227

Query: 167 -DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
               G  D+ +WN +++ L Q  +  EAV     M   GV +P+ VT   AL AC  L  
Sbjct: 228 GATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGV-RPDGVTFASALPACSRLEL 286

Query: 226 WKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTM 283
              G ++H Y I+++ L  N  V +A++DMYA    + KA +VFD +    K L  WN M
Sbjct: 287 LDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAM 346

Query: 284 VMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           +  +A  G    AL LF +M   AG  P + +  + L AC  +        +   +   G
Sbjct: 347 ICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRG 406

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           +  N     +++D+  R G+   A  I   V +  D+V W TL+  C + G V  A   +
Sbjct: 407 MAGNRFVQNALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLA 465

Query: 403 RKLVEM 408
           R++ ++
Sbjct: 466 REMQQL 471



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 137/325 (42%), Gaps = 37/325 (11%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFL--ADALLGTTLLDVYAKVGEIVSAKKVFDEMG- 170
           A+K+ A +        IH+  LR G L      +   LL  YA+ G + +A +VF  +  
Sbjct: 63  AIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISD 122

Query: 171 -VRDIASWNALIAGLAQGNLASEAVDLFKR---------MKMEGVFKPNEVTVLGALAAC 220
              D  S+N+LI+ L           LF+R           + G       T++  L A 
Sbjct: 123 SAHDAVSFNSLISALC----------LFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAV 172

Query: 221 GHL----GAWKEGDKIHEYIREERL--DMNVVVCNAVIDMYAKCGLLDKAFEVFDN-IKC 273
            HL     A + G + H +  +  L         NA++ MYA+ GL+  A  +F      
Sbjct: 173 SHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPG 232

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
           R  +VTWNTMV      G    A++    M   GV+PD V++ +AL AC+   L+D G  
Sbjct: 233 RGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGRE 292

Query: 334 LFN-SMANCGVKPNMKHYGSVVDLLG---RAGRLQEACDIVKSVSMGTDMVLWQTLL-GA 388
           +    + +  +  N     ++VD+     + G+ ++  D+V     G  + +W  ++ G 
Sbjct: 293 MHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDS--GKQLGMWNAMICGY 350

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNC 413
            Q   D E   + +R   E G   C
Sbjct: 351 AQAGMDEEALRLFARMEAEAGFVPC 375


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/529 (38%), Positives = 308/529 (58%), Gaps = 6/529 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALK 116
           L  A A+F  I   +   ++A++   A   +   A+L + +M   G    +A+T +    
Sbjct: 36  LDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFN 95

Query: 117 ACARVLALFETLQIHSHVLRHGFL--ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           AC  +  L +  +IH+  +  G L  ++A+L   LL++Y + G +  A+KVFD M   D 
Sbjct: 96  ACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDA 155

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW ++I    +     EA++LF RM +EG+  P  VT+   L AC   GA K G +IH 
Sbjct: 156 FSWTSMITACTENCELLEALELFHRMNLEGI-PPTSVTLASVLNACACSGALKVGKQIHS 214

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
            +       +V+   A++DMYAKCG L+ + +VF  ++ R S V+W  M+ A A HG G 
Sbjct: 215 RLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNS-VSWTAMIAALAQHGQGD 273

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSV 353
            ALELF++M   G+  D  +++  L AC+HAGL+ + +  F+SM  +  + P   HY   
Sbjct: 274 EALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRA 333

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           +D +GRAGRLQ+A +++ S+    + + W+TLL AC+++   E A   +  L ++   + 
Sbjct: 334 LDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDS 393

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
             + LL N+YAA  R+ D  RVRK M +R +KKVPG S+IEV   +H+F   D++H    
Sbjct: 394 MAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRD 453

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           EI  +L+++  +++E GY   T  VLH + EEEKE  +  HSEKLA+AFGLI+T   T +
Sbjct: 454 EILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPL 513

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            + KNLR+C DCH   K+I+K+  R I+VRD  RFH F+DG CSCKDYW
Sbjct: 514 LIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 137/271 (50%), Gaps = 4/271 (1%)

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E  +IHS +   GF    +    L+ +YAK G +  A+ +F+ +  R + SW+A+I   A
Sbjct: 3   EGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYA 62

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE--ERLDM 243
                 EA+ LF RM+ +G  +PN +T  G   ACG +   ++G +IH       E    
Sbjct: 63  LHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSS 122

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N ++ NA+++MY +CG L++A +VFD +       +W +M+ A   + +   ALELF +M
Sbjct: 123 NAILENALLNMYVRCGSLEEARKVFDTMD-HPDAFSWTSMITACTENCELLEALELFHRM 181

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
              G+ P  V+  + L AC  +G +  G ++ + +   G   ++    +++D+  + G L
Sbjct: 182 NLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSL 241

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           + +  +  ++    + V W  ++ A   +G 
Sbjct: 242 ECSSKVFTAMET-RNSVSWTAMIAALAQHGQ 271



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 151/325 (46%), Gaps = 9/325 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +++ A    +G+ +S    + + ++  Y       L  A  +F  ++ P    + +++  
Sbjct: 107 REIHALAMASGELKSSNAILENALLNMYVRC--GSLEEARKVFDTMDHPDAFSWTSMITA 164

Query: 83  LAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
              + +   A+ L++R  L G   + ++T +  L ACA   AL    QIHS +   GF +
Sbjct: 165 CTENCELLEALELFHRMNLEGIPPT-SVTLASVLNACACSGALKVGKQIHSRLDASGFHS 223

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
             L  T LLD+YAK G +  + KVF  M  R+  SW A+IA LAQ     EA++LFK M 
Sbjct: 224 SVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMN 283

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEG-DKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
           +EG+   +  T +  L AC H G  KE  +  H  + +  +          +D   + G 
Sbjct: 284 LEGMV-ADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGR 342

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAAL 319
           L  A E+  ++      +TW T++ A  +H    RA ++ E + +  + P+D ++Y    
Sbjct: 343 LQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSK--LAPEDSMAYTLLG 400

Query: 320 CACNHAGLVDDGVRLFNSMANCGVK 344
                 G   D +R+   M + G+K
Sbjct: 401 NVYAATGRYGDQMRVRKGMTDRGLK 425



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 5/166 (3%)

Query: 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
           +EG +IH  +         +  N ++ MYAKCG LD+A  +F+ I   +++V+W+ M+ A
Sbjct: 2   EEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGI-LERTVVSWSAMIGA 60

Query: 287 FAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFN-SMANCGVK 344
           +A+HG G  AL LF +M   G V+P+ +++     AC     ++ G  +   +MA+  +K
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 345 -PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
             N     +++++  R G L+EA  +  ++    D   W +++ AC
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTMDH-PDAFSWTSMITAC 165


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/604 (35%), Positives = 340/604 (56%), Gaps = 50/604 (8%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTN--DFNAVL 80
           ++L A LTT+G  ++    + + + +FYA S   E+A A  LF +I     +  D+  +L
Sbjct: 26  RELHAVLTTSGLKKAPRSYLSNALFQFYASS--GEIATAQKLFDEIPLSDKDNVDWTTLL 83

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSD--ALTCSFALKACARVLALFETLQIHSHVLRHG 138
              +      N++  + +M R     D  +L C F +  CA++  L    Q H   ++ G
Sbjct: 84  SSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGV--CAKLEDLRFGEQGHGVAVKMG 141

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKK-------------------------------VFD 167
           FL    +   L+D+Y K G +   K+                               VFD
Sbjct: 142 FLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFD 201

Query: 168 EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227
           EM  R++ +W  ++AG        E ++L   M        N VT+   L+AC   G   
Sbjct: 202 EMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLV 261

Query: 228 EGDKIHEY-------IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
            G  +H Y       + EE     V+V  A++DMYAKCG +D + +VF  ++ ++++VTW
Sbjct: 262 IGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMR-KRNVVTW 320

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
           N +    A+HG G   +++F +M R  VKPDD+++ A L AC+H G+VD+G R F+S+  
Sbjct: 321 NALFSGLAMHGKGRMVIDMFPEMVRE-VKPDDLTFTALLSACSHLGMVDEGWRCFHSLQF 379

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            G++P + HY  +VD+LGRAGR++EA  +++ + +  + V+  +LLG+C ++G +E+AE 
Sbjct: 380 YGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKLEIAER 439

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
             R+L++M   +    +L+SN+Y A  R D    +R +++NR ++K+PG S I V   +H
Sbjct: 440 IKRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLSSIYVNDSVH 499

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTS-CVLHDIGE-EEKENALCYHSEKL 518
           +F + D+SH + +E+Y KL+E++ +I+  GY    S  V    G+ EEKE ALC HSEKL
Sbjct: 500 RFSSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDISGLVSPSEGDLEEKEQALCCHSEKL 559

Query: 519 AVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSC 578
           AV FGL+ T   T + VFKNLRICRDCH  +K++SKVY+REII+RDR RFH+FK G+CSC
Sbjct: 560 AVCFGLLETKPRTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSC 619

Query: 579 KDYW 582
            DYW
Sbjct: 620 SDYW 623


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/569 (36%), Positives = 333/569 (58%), Gaps = 14/569 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQI--NAPSTNDFNAVL 80
           +++ A++    +  +  F V S +++ YA     ++  A  +F  +  +      +NA++
Sbjct: 291 REMHAYVIKDDELAANSF-VASALVDMYATH--EQVGKARQVFDMVPDSGKQLGMWNAMI 347

Query: 81  RGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
            G A +     A+ L+ R            T +  L ACAR  A      +H +V++ G 
Sbjct: 348 CGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGM 407

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG-LAQGNLASEAVDLFK 198
             +  +   L+D+YA++G+   A+++F  + + D+ SWN LI G + QG++A +A  L +
Sbjct: 408 AGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVA-DAFQLAR 466

Query: 199 RMKM--EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
            M+   EG   PN +T++  L  C  L A   G +IH Y     LD +V V +A++DMYA
Sbjct: 467 EMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYA 526

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSY 315
           KCG L  +  VFD +  R++ +TWN ++MA+ +HG G  A  LF++M  +G  +P++V++
Sbjct: 527 KCGCLALSRAVFDRLP-RRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTF 585

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +AAL AC+H+G+VD G++LF++M  + GV+P       VVD+LGRAGRL EA  +V S+ 
Sbjct: 586 MAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSME 645

Query: 375 MGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
            G   V  W T+LGAC+L+ +V + EIA  +L+E+       +VLL N+Y+A  +W    
Sbjct: 646 AGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAA 705

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA 493
            VR  M+ R V K PG S+IEV G IH+F   + +H    E++  ++ +  ++   GY  
Sbjct: 706 EVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTP 765

Query: 494 GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
            TSCVLHD+ + +K   L  HSEKLA+AFGL+  +   +I+V KNLR+C DCH+  K +S
Sbjct: 766 DTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLS 825

Query: 554 KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K+  REI++RD  RFH F++G CSC DYW
Sbjct: 826 KMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 166/355 (46%), Gaps = 8/355 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++  L  S     AV     M+    R D +T + AL AC+R+  L    ++H++V+
Sbjct: 239 WNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVI 298

Query: 136 RHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEM--GVRDIASWNALIAGLAQGNLASE 192
           +   L A++ + + L+D+YA   ++  A++VFD +    + +  WNA+I G AQ  +  E
Sbjct: 299 KDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEE 358

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           A+ LF RM+ E  F P E T+   L AC    A+   + +H Y+ +  +  N  V NA++
Sbjct: 359 ALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALM 418

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL---FEQMGRAGVK 309
           DMYA+ G  D A  +F  +     +V+WNT++    V G    A +L    +Q+   GV 
Sbjct: 419 DMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVV 477

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           P+ ++ +  L  C        G  +        +  ++    ++VD+  + G L  +  +
Sbjct: 478 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 537

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
              +    + + W  L+ A  ++G    A +   ++   G     +   ++ L A
Sbjct: 538 FDRLPR-RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAA 591



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 171/366 (46%), Gaps = 15/366 (4%)

Query: 56  NELAYAHALFRQIN--APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF 113
             LA A  +F  I+  A     FN+++  L    +  +A+   R ML G H   + T   
Sbjct: 108 GRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVS 167

Query: 114 ALKACARVLALFETLQI----HSHVLRHGFL--ADALLGTTLLDVYAKVGEIVSAKKVF- 166
            L+A + + A    +++    H+  L++G L          LL +YA++G +  A+++F 
Sbjct: 168 VLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFA 227

Query: 167 -DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
               G  D+ +WN +++ L Q  +  EAV     M   GV +P+ VT   AL AC  L  
Sbjct: 228 GATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGV-RPDGVTFASALPACSRLEL 286

Query: 226 WKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTM 283
              G ++H Y I+++ L  N  V +A++DMYA    + KA +VFD +    K L  WN M
Sbjct: 287 LDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAM 346

Query: 284 VMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           +  +A  G    AL LF +M   AG  P + +  + L AC  +        +   +   G
Sbjct: 347 ICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRG 406

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           +  N     +++D+  R G+   A  I   V +  D+V W TL+  C + G V  A   +
Sbjct: 407 MAGNRFVQNALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLA 465

Query: 403 RKLVEM 408
           R++ ++
Sbjct: 466 REMQQL 471



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 137/325 (42%), Gaps = 37/325 (11%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFL--ADALLGTTLLDVYAKVGEIVSAKKVFDEMG- 170
           A+K+ A +        IH+  LR G L      +   LL  YA+ G + +A +VF  +  
Sbjct: 63  AIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISD 122

Query: 171 -VRDIASWNALIAGLAQGNLASEAVDLFKR---------MKMEGVFKPNEVTVLGALAAC 220
              D  S+N+LI+ L           LF+R           + G       T++  L A 
Sbjct: 123 SAHDAVSFNSLISALC----------LFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAV 172

Query: 221 GHL----GAWKEGDKIHEYIREERL--DMNVVVCNAVIDMYAKCGLLDKAFEVFDN-IKC 273
            HL     A + G + H +  +  L         NA++ MYA+ GL+  A  +F      
Sbjct: 173 SHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPG 232

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
           R  +VTWNTMV      G    A++    M   GV+PD V++ +AL AC+   L+D G  
Sbjct: 233 RGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGRE 292

Query: 334 LFN-SMANCGVKPNMKHYGSVVDLLG---RAGRLQEACDIVKSVSMGTDMVLWQTLL-GA 388
           +    + +  +  N     ++VD+     + G+ ++  D+V     G  + +W  ++ G 
Sbjct: 293 MHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDS--GKQLGMWNAMICGY 350

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNC 413
            Q   D E   + +R   E G   C
Sbjct: 351 AQAGMDEEALRLFARMEAEAGFVPC 375


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/549 (38%), Positives = 312/549 (56%), Gaps = 39/549 (7%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQ 129
           P+   +N ++ GL  S +  +AV+    M   G  R DA   S AL A   V  +    Q
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQ 178

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG-- 187
           +H + ++ G  ADA + T L+D+Y K G+     +VFDE    D+AS NALIAGL++   
Sbjct: 179 LHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQ 238

Query: 188 ------------------NLAS---------------EAVDLFKRMKMEGVFKPNEVTVL 214
                             N+ S               EAV+ F+ M+ +G  +PN VT+ 
Sbjct: 239 VCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGT-EPNSVTIP 297

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L A  ++ A   G   H +   +    +V V +A++DMYAKCG +  A  +FD +  R
Sbjct: 298 CVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSR 357

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
            ++V+WN M+  +A++G+   A+ +F  M +   KPD V++   L AC  AGL ++G   
Sbjct: 358 -NVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHY 416

Query: 335 FNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           F  M N  GV P M+HY  +V LLGRAG+L EA D++  +    D  +W +LLG+C+++G
Sbjct: 417 FKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHG 476

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           +V++AE+A+ KL  +   N G++VLLSN+YA+ + WD V RVR+ MK+  +KK  G S+I
Sbjct: 477 NVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWI 536

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           E+   +H     D SH     I EK++++  ++++ G+   T  VLHD+ E+EK++ L  
Sbjct: 537 EIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAV 596

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEKLAVA GLISTS  T+++V KNLRIC DCH+ +K IS    REI VRD  RFH F  
Sbjct: 597 HSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSG 656

Query: 574 GACSCKDYW 582
           G CSC D+W
Sbjct: 657 GKCSCGDFW 665



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 140/365 (38%), Gaps = 78/365 (21%)

Query: 103 SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA 162
           S   D      A K+C   L L   L   + V   G   D  + ++LL  Y ++G   +A
Sbjct: 15  SFPPDPHLLPTAFKSCP-TLPLARALHAVAEV--SGLARDPFVASSLLHAYLRLGTTGNA 71

Query: 163 KKVFDEMG--VRDIASWNALIA------------------------------------GL 184
           + +FD M    R +  W+AL+A                                    GL
Sbjct: 72  RALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGL 131

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
            +   A +AV     M  EG+ +P+   V  AL+A G +G    G ++H Y  +     +
Sbjct: 132 NRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRAD 191

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
             V  A+IDMY KCG   +   VFD       + + N ++   + +     AL LF++  
Sbjct: 192 ACVVTALIDMYGKCGQAAEVVRVFDE-SSHMDVASCNALIAGLSRNAQVCEALRLFKEFV 250

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN----------------MK 348
             GV+ + VS+ + +  C   G   + V  F  M   G +PN                + 
Sbjct: 251 DRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALM 310

Query: 349 H-------------------YGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           H                     ++VD+  + GR+++A  I+    +  ++V W  ++G  
Sbjct: 311 HGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDA-RIIFDTMVSRNVVSWNAMIGGY 369

Query: 390 QLYGD 394
            +YG+
Sbjct: 370 AMYGE 374


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/546 (36%), Positives = 309/546 (56%), Gaps = 10/546 (1%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + ++  YA S  N+L  A A F  I +P    +NA+        +   A++ + +ML   
Sbjct: 393 TTLLTTYARS--NDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEG 450

Query: 104 HRSDALTCSFALKACARVLALFETL---QIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
            R    T   AL ACA       +    +I S +   G   D  +    L++YAK G + 
Sbjct: 451 VRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLA 510

Query: 161 SAKKVFDEMGV--RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
            A+ VF+ +    RD  +WN+++A      L  EA +LF+ M+ E + KPN+VT +  L 
Sbjct: 511 DARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLD 570

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC-RKSL 277
           A     +  +G +IH  +     + + V+ NA+++MYAKCG LD A  +FD     ++ +
Sbjct: 571 ASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDV 630

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           + W +++  +A +G   RAL+LF  M + GV+P+ V++++AL ACNH G ++ G  L + 
Sbjct: 631 IAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLSG 690

Query: 338 MA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
           M  + G+ P  KH+  +VDLLGR GRL EA  +++  S   D++ W  LL AC+   ++E
Sbjct: 691 MTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQA-DVITWMALLDACKNSKELE 749

Query: 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
             E  + +++++       +++L+++YAA  RW++   +RK M ++ ++  PG S +EV 
Sbjct: 750 RGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVN 809

Query: 457 GVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSE 516
             +H F   DKSH K  EIY +L+ + + IK  GY A T  VLHD+ +E KE  L  HSE
Sbjct: 810 QELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHSE 869

Query: 517 KLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
           KLA+AFGL+ST   + ++V KNLR+C DCH   KLISKV  R+I++RD  R+H F  G C
Sbjct: 870 KLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTC 929

Query: 577 SCKDYW 582
           SC DYW
Sbjct: 930 SCGDYW 935



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 201/410 (49%), Gaps = 28/410 (6%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYA-LSPLNELAYAHAL 64
           ++L  C   G +S   ++ +   +   G  + + F VR+ +++ Y  L  L++ A+   L
Sbjct: 251 SVLDSCVEAGLLSLEDVRAIHGRIVGAG-IEREAF-VRTALVDSYGKLGSLDD-AWEVFL 307

Query: 65  FRQINAPSTN--DFNAVLRGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKAC--- 118
            +    PST+    +A++     +  P  ++ L++   L G+  S  +T    L AC   
Sbjct: 308 RKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPS-GVTLVSVLNACSML 366

Query: 119 ----ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
               A    L + +++ S         D +LGTTLL  YA+  ++  A+  FD +   D+
Sbjct: 367 QVGSATAFVLEQAMEVVSAT------RDNVLGTTLLTTYARSNDLPRARATFDAIQSPDV 420

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG---AWKEGDK 231
            SWNA+ A   Q + + EA+ LF+RM +EGV +P+  T + AL AC       A   G +
Sbjct: 421 VSWNAMAAAYLQHHRSREALVLFERMLLEGV-RPSVATFITALTACAAYPPQTASAIGKR 479

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMAFAVH 290
           I   + E  L+ +  V NA ++MYAKCG L  A  VF+ I   R+  +TWN+M+ A+  H
Sbjct: 480 IQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHH 539

Query: 291 GDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKH 349
           G G  A ELF+ M     VKP+ V+++A L A      +  G  +   + + G + +   
Sbjct: 540 GLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVI 599

Query: 350 YGSVVDLLGRAGRLQEACDIV-KSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             +++++  + G L +A  I  KS S   D++ W +L+     YG  E A
Sbjct: 600 QNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERA 649



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 26/294 (8%)

Query: 115 LKACARVLALFETLQIHSHVL-------RHGFLADALLGTTLLDVYAKVGEIVSAKKVFD 167
           L+AC R+ AL +  ++H+H+L        H FLA     + L+ ++AK G +  A+ + D
Sbjct: 50  LQACGRLRALKQGQRLHAHILSRRIDLHNHSFLA-----SDLIVMHAKCGNLAEAEALAD 104

Query: 168 EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227
                 + S  A+I    +     +A++LF RM++    +PN   ++  + AC  LG   
Sbjct: 105 RFA--SVYSCTAMIRAWMEHGRPDKAMELFDRMEV----RPNCHALIALVNACSCLGNLA 158

Query: 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVM 285
            G +IH  I +   + N V+ NA+I MY+KCG L  A + FD +    ++ +VTWN M+ 
Sbjct: 159 AGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMIS 218

Query: 286 AFAVHGDGPRALELFEQMGRAGV-KPDDVSYLAALCACNHAGL--VDDGVRLFNSMANCG 342
           AF  +G    AL+LF  M R G   P+ V++++ L +C  AGL  ++D   +   +   G
Sbjct: 219 AFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAG 278

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIV---KSVSMGTDMVLWQTLLGACQLYG 393
           ++       ++VD  G+ G L +A ++          T +V    ++ AC   G
Sbjct: 279 IEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNG 332


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/563 (36%), Positives = 329/563 (58%), Gaps = 10/563 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +Q+ A + T G ++  L+     +I +     L +   AH +   +   +   + A++ G
Sbjct: 55  RQVHARMVTAG-YRPALYLATRLVIMYARCGALED---AHNVLDGMPERNVVSWTAMISG 110

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC--ARVLALFETLQIHSHVLRHGFL 140
            + + +P  A   +  MLR     +  T +  L +C  ++ +   +  Q+H+  ++  F 
Sbjct: 111 YSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFE 170

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
               +G++LLD+YA+   I  A++VFD +  RD+ S+  +++G  +  L  EA++LF+++
Sbjct: 171 LHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQL 230

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
             EG+ + N+VT    L A   L +   G ++H  I    L   + + N++IDMY+KCG 
Sbjct: 231 YNEGM-QCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGK 289

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L  +  VFDN+  R S+V+WN M+M +  HG     ++LF  M    VKPD V+ LA L 
Sbjct: 290 LLYSRRVFDNMPER-SVVSWNAMLMGYGRHGMAYEVVQLFRFMCDK-VKPDSVTLLAVLL 347

Query: 321 ACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
             +H GLVD+G+ +F+ +        N +HYG V+DLLGR+G+L++A  +++ +      
Sbjct: 348 GYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKMPFQPTR 407

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
            +W +LLGAC+++ +V + E  ++KL ++   N G++V+LSN+YAA   W DV R+RK M
Sbjct: 408 AIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAAARMWKDVFRLRKLM 467

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
             + V K PG S++ +  VIH F +S++ H +  +I  K++EI   IK  G+    SCVL
Sbjct: 468 LKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVKINEIYAAIKAAGFVPDLSCVL 527

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           HD+ +E+KE  L  HSEKLA+ FGL+ST    +IQV KNLRIC DCH+  K +SKVY RE
Sbjct: 528 HDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVSKVYGRE 587

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           I +RD+ RFH   +GAC+C DYW
Sbjct: 588 ISLRDKNRFHLITEGACTCGDYW 610



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 130/252 (51%), Gaps = 4/252 (1%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           A+  C    AL E  Q+H+ ++  G+     L T L+ +YA+ G +  A  V D M  R+
Sbjct: 41  AITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERN 100

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC-GHLGAWKEGDK- 231
           + SW A+I+G +Q    +EA DLF  M   G  +PNE T+   L +C G  G  +   K 
Sbjct: 101 VVSWTAMISGYSQNERPAEAWDLFIMMLRAGC-EPNEFTLASVLTSCTGSQGIHQHQIKQ 159

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +H +  ++  ++++ V ++++DMYA+   + +A  VFD +  R  +V++ T++  +   G
Sbjct: 160 VHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPAR-DVVSYTTILSGYTRLG 218

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
               AL LF Q+   G++ + V++   L A +    +D G ++   +    +   M    
Sbjct: 219 LDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQN 278

Query: 352 SVVDLLGRAGRL 363
           S++D+  + G+L
Sbjct: 279 SLIDMYSKCGKL 290


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/469 (40%), Positives = 291/469 (62%), Gaps = 13/469 (2%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           ALK C  +    E L++       G L  A+  T+          ++  K +F ++  + 
Sbjct: 222 ALKLCREM----EDLKLKPDAGTMGSLLPAVTNTS-------CDNVLYVKDMFVKLKEKS 270

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           + SWN +IA      + +EAVDL+ +M++ GV +P+ V++   L ACG L A   G +IH
Sbjct: 271 LISWNVMIAVYVNNAMPNEAVDLYLQMQVHGV-EPDAVSISSVLPACGDLSAAVLGRRIH 329

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
           EY+  ++L  N+++ NA+IDMYAKCG L +A  VFD +  R  +V+W +M+ A+ + G G
Sbjct: 330 EYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFR-DVVSWTSMISAYGMSGQG 388

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             A+ LF++M  +G  PD +++++ L AC+HAGLVD+G   FN MA  G+ P ++HY  +
Sbjct: 389 KDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAEYGITPGIEHYNCM 448

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VDLLGRAG++ EA  + + + M  +  +W +LL AC++Y  + +A +A+  L ++     
Sbjct: 449 VDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQS 508

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
           G +VLLSN+YA   RW DV  VR  M ++ +KK+PG S +E+   ++ F   D+SH + +
Sbjct: 509 GYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSK 568

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           EIY+ L  ++ ++KE GY   T   LHD+ EE+KE  L  HSEKLA+ F +++T   ++I
Sbjct: 569 EIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTI 628

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++ KN+R+C DCH   KLISK+  REII+RD  RFH F+DG CSC DYW
Sbjct: 629 RITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 114/235 (48%), Gaps = 1/235 (0%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           + + Y   +F ++   S   +N ++    +++ P  AV  Y QM       DA++ S  L
Sbjct: 254 DNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVL 313

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
            AC  + A     +IH +V R     + LL   L+D+YAK G +  A+ VFD+M  RD+ 
Sbjct: 314 PACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVV 373

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           SW ++I+         +AV LFK+M+  G F P+ +  +  LAAC H G   EG      
Sbjct: 374 SWTSMISAYGMSGQGKDAVALFKKMRDSG-FTPDWIAFVSVLAACSHAGLVDEGRYCFNL 432

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           + E  +   +   N ++D+  + G +D+A+ +   +    +   W +++ A  V+
Sbjct: 433 MAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVY 487



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 3/184 (1%)

Query: 129 QIHSHVL-RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
           ++HS +L       +  LG  L+  YA  GE    + +FDE+  +++  +N +I      
Sbjct: 56  KLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNN 115

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
            L  +A+ +FK M  +G F P+  T    L AC   G    G +IH  + +  LDMN+ +
Sbjct: 116 GLYQDALLVFKTMANQG-FYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYI 174

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
            N ++ MY KC  LD A  V D +  R  +V+WN+MV  +A +G    AL+L  +M    
Sbjct: 175 GNGLVSMYGKCKWLDAARRVLDEMPGR-DMVSWNSMVAGYAQNGRFNDALKLCREMEDLK 233

Query: 308 VKPD 311
           +KPD
Sbjct: 234 LKPD 237


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/545 (37%), Positives = 312/545 (57%), Gaps = 42/545 (7%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G  H      A+   R+M     + D +T +  + ACA V +     Q+H+++L
Sbjct: 257 WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYIL 316

Query: 136 R------HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA---------- 179
           +      H F     +   L+ +Y K  ++  A+K+F  M VR+I +WNA          
Sbjct: 317 KNELNPNHSFCLS--VSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGR 374

Query: 180 ---------------------LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
                                +I+GLAQ     E + LFK+M+++G F+P +    GAL 
Sbjct: 375 MEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDG-FEPCDFAFAGALT 433

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC  LGA + G ++H  +     + ++ V NA+I MYAKCG+++ A  VF  +     LV
Sbjct: 434 ACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLV 492

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +WN+M+ A   HG G +A+ELF+QM + GV PD +++L  L AC+HAGLV+ G   FNSM
Sbjct: 493 SWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSM 552

Query: 339 -ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
             + G+ P   HY  +VDL  RAG    A  ++ S+       +W+ LL  C+++G++++
Sbjct: 553 LESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDL 612

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
              A+ +L ++   N G +VLLSN+YA   RW+DV +VRK M+++ V+K P  S+IEV  
Sbjct: 613 GIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVEN 672

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            +H F   D  H +   +Y  L+++  ++K+ GY   T  VLHD+  E+KE+AL  HSEK
Sbjct: 673 KVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEK 732

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LAV FG++      +++VFKN+RIC DCH+  K +SKV  REIIVRDR RFH FK+G CS
Sbjct: 733 LAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCS 792

Query: 578 CKDYW 582
           C+DYW
Sbjct: 793 CRDYW 797



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 118/500 (23%), Positives = 211/500 (42%), Gaps = 126/500 (25%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQ 67
           LQ CS     S    + + AH+  +G      F   ++++E Y  S  + + YA  LF +
Sbjct: 18  LQLCSPQDPASFSLARAVHAHMIASGFKPRGHF--LNRLLEMYCKS--SNVVYARQLFEE 73

Query: 68  INAPS---------------------------------TNDFNAVLRGLAHSSKPTNAVL 94
           I  P                                  +  +NA++ G AH+    +A+ 
Sbjct: 74  IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALE 133

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALF-----ETLQIHSHVLRHGF--LADALLGT 147
            +R M R   R D  T +  L A    L LF     +  Q+H  V++ G   ++ ++L  
Sbjct: 134 LFRAMRRDDFRPDDFTFTSVLSA----LVLFVGNEQQCGQMHCAVVKTGMGCVSSSVL-N 188

Query: 148 TLLDVYAK--------VGEIVSAKKVFDEMGVRDI------------------------- 174
            LL VY K           +VSA+K+FDEM  RD                          
Sbjct: 189 ALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEA 248

Query: 175 ------ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
                 A+WNA+I+G        EA+ L ++M+  G+ + +++T    ++AC ++G+++ 
Sbjct: 249 MVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGI-QFDDITYTTIISACANVGSFQM 307

Query: 229 GDKIHEYIREERLDMNVVVC----NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN--- 281
           G ++H YI +  L+ N   C    NA+I +Y K   +D+A ++F  +  R +++TWN   
Sbjct: 308 GKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAIL 366

Query: 282 ----------------------------TMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313
                                        M+   A +G G   L+LF+QM   G +P D 
Sbjct: 367 SGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDF 426

Query: 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
           ++  AL AC+  G +++G +L   + + G + ++    +++ +  + G + EA + V   
Sbjct: 427 AFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCG-VVEAAESVFVT 485

Query: 374 SMGTDMVLWQTLLGACQLYG 393
               D+V W +++ A   +G
Sbjct: 486 MPSVDLVSWNSMIAALGQHG 505



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 8/247 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A + F ++   +      ++ GLA +      +  ++QM            + AL AC+ 
Sbjct: 378 AKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSV 437

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL    Q+H+ ++  G+ +   +G  ++ +YAK G + +A+ VF  M   D+ SWN++
Sbjct: 438 LGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSM 497

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IA L Q     +A++LF +M  EGVF P+ +T L  L AC H G  ++G     Y     
Sbjct: 498 IAALGQHGHGVKAIELFDQMLKEGVF-PDRITFLTVLTACSHAGLVEKG---RHYFNSML 553

Query: 241 LDMNVVVCN----AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
               +  C      ++D++ + G+   A  V D++  +     W  ++    +HG+    
Sbjct: 554 ESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLG 613

Query: 297 LELFEQM 303
           +E  EQ+
Sbjct: 614 IEAAEQL 620


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/561 (36%), Positives = 325/561 (57%), Gaps = 40/561 (7%)

Query: 61  AHALFRQINAPSTND--FNAVLRGLAHSSKPTNAVLWYRQMLR--GSHR--SDALTCSFA 114
           A  LF    +PS     +N ++R  +        +  + +ML   G  +   D  T +F 
Sbjct: 125 ARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFV 184

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           + +C+  ++L     +H  V++ GF ++  +G +++++ +    +  A+KVF++M  RD+
Sbjct: 185 ITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDV 244

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKM-------------------------------E 203
            SW +L+ G A+      A +LF  M +                               +
Sbjct: 245 FSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCD 304

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
               PNE  ++  L+AC HLGA  +G+ IH YI +  +  +  +  A+IDMYAKCG +D 
Sbjct: 305 DRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDC 364

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A  VF+ I C++ ++++ +M+   + HG G  AL +F QM    V P++++ L  L  C+
Sbjct: 365 ASRVFNGI-CKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCS 423

Query: 324 HAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           H+GLV++G  +  +M +  G+ P ++HYG  +DLLGRAG L+ A ++VK++ M  D+V+W
Sbjct: 424 HSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIW 483

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEM-GSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           + LL A +++ +V + E     + ++  S++ G  VLLSNLYA+  RW+ V  +RK M +
Sbjct: 484 RALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVD 543

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           R  +  PG S+IEV G++H+F  +D+ H +  EI  KL+EI+ ++ + GY+A T  V  D
Sbjct: 544 RRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFD 603

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           + EEEKE A+ +HSEKLA+AFGL+ST   T I++ KNLR C DCH  +K IS+VY REI+
Sbjct: 604 LNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIV 663

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRDR RFH F +G CSCKD+W
Sbjct: 664 VRDRSRFHTFIEGDCSCKDFW 684



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 120/282 (42%), Gaps = 38/282 (13%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD--IASWNALIAGLAQ 186
           QIH+ V+     ++A L  +L+  Y       +A+ +FD        I  WN +I   ++
Sbjct: 92  QIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSK 151

Query: 187 GNLASEAVDLFKRM-KMEGVFK--PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
              + E + LF RM  ++G  +  P+E T    + +C H  +   G+ +H  + +   + 
Sbjct: 152 IRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFES 211

Query: 244 NVVVCNAVIDM-------------------------------YAKCGLLDKAFEVFDNIK 272
           N+ V N+VI+M                               YAK G +D+A E+F+ + 
Sbjct: 212 NLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMP 271

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDG 331
            R   V+W  M+  F   G  P AL  F  M     V P++   +  L AC H G +D G
Sbjct: 272 VRND-VSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQG 330

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
             +   +   G++ +     +++D+  + GR+  A  +   +
Sbjct: 331 NWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGI 372



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 6/174 (3%)

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT-WNTMVMAFA 288
            +IH  +  + L  N  +  ++I  Y        A  +FD+       +  WN M+  ++
Sbjct: 91  QQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYS 150

Query: 289 VHGDGPRALELFEQM----GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
              +    + LF +M    G   V PD+ ++   + +C+H   +  G  +   +   G +
Sbjct: 151 KIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFE 210

Query: 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            N+    SV+++     R+++A  +   +S   D+  W +LLG    +G+++ A
Sbjct: 211 SNLYVGNSVINMCSVFARMEDARKVFNQMS-ERDVFSWTSLLGGYAKHGEMDRA 263


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/510 (38%), Positives = 303/510 (59%), Gaps = 9/510 (1%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           + A++ G   +     AV  + +M R   R +  T S  L A    L +    ++H+ V+
Sbjct: 369 WTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTA----LPVISPSEVHAQVV 424

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           +  +   + +GT LLD Y K+G++  A KVF  +  +DI +W+A++AG AQ      A+ 
Sbjct: 425 KTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIK 484

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGA-WKEGDKIHEYIREERLDMNVVVCNAVIDM 254
           +F  +   GV KPNE T    L  C    A   +G + H +  + RLD ++ V +A++ M
Sbjct: 485 IFSELTKGGV-KPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTM 543

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
           YAK G ++ A EVF   +  K LV+WN+M+  +A HG   +AL++F++M +  VK D V+
Sbjct: 544 YAKKGHIESAEEVFKRQR-EKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVT 602

Query: 315 YLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
           ++    AC HAGLV++G + F+ M  +C + P  +H   +VDL  RAG+L++A  ++ ++
Sbjct: 603 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNM 662

Query: 374 SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
                  +W+T+L AC+++   E+  +A+ K++ M   +   +VLLSN+YA    W +  
Sbjct: 663 PNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERA 722

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA 493
           +VRK M  R+VKK PG+S+IEV    + F   D+SH    +IY KL+++  ++K+ GY  
Sbjct: 723 KVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEP 782

Query: 494 GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
            TS VL DI +E KE  L  HSE+LA+AFGLI+T + + + + KNLR+C DCH VIKLI+
Sbjct: 783 DTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKLIA 842

Query: 554 KVYNREIIVRDRVRFHRF-KDGACSCKDYW 582
           K+  REI+VRD  RFH F  DG CSC D+W
Sbjct: 843 KIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 133/270 (49%), Gaps = 8/270 (2%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF-- 113
           + L YAH LF +        + ++L G +   +   A    R  L   H    + CS   
Sbjct: 45  SRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEAT---RLFLNIQHLGMEMDCSIFS 101

Query: 114 -ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
             LK  A +       Q+H   ++ GFL D  +GT+L+D Y K       + VFDEM  R
Sbjct: 102 SVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKER 161

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           ++ +W  LI+G A+ +L  E + LF RM+ EG  +PN  T   AL      G    G ++
Sbjct: 162 NVVTWTTLISGYARNSLNEEVLTLFMRMQDEGT-QPNSFTFAAALGVLAEEGVGGRGLQV 220

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H  + +  LD  + V N++I++Y KCG + KA  +FD  +  KS+VTWN+M+  +A +G 
Sbjct: 221 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEV-KSVVTWNSMISGYAANGL 279

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCAC 322
              AL +F  M    V+  + S+ + +  C
Sbjct: 280 DLEALGMFYSMRLNHVRLSESSFASIIKLC 309



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 177/374 (47%), Gaps = 13/374 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           + LQ H         K  PV + +I  Y       +  A  LF +    S   +N+++ G
Sbjct: 216 RGLQVHTVVVKNGLDKTIPVSNSLINLYL--KCGNVRKARILFDKTEVKSVVTWNSMISG 273

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A +     A+  +  M     R    + +  +K CA +  L  T Q+H  V+++GF+ D
Sbjct: 274 YAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFD 333

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMG-VRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
             + T L+  Y+K   ++ A ++F E G + ++ SW A+I+G  Q +   EAV LF  MK
Sbjct: 334 QNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMK 393

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            +GV +PNE T    L A   +       ++H  + +   + +  V  A++D Y K G +
Sbjct: 394 RKGV-RPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKV 448

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL-- 319
           D+A +VF  I   K +V W+ M+  +A  G+   A+++F ++ + GVKP++ ++ + L  
Sbjct: 449 DEAAKVFSGID-NKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNV 507

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           CA   A +   G +         +  ++    +++ +  + G ++ A ++ K      D+
Sbjct: 508 CAATTASM-GQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKR-QREKDL 565

Query: 380 VLWQTLLGACQLYG 393
           V W +++     +G
Sbjct: 566 VSWNSMISGYAQHG 579



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 109/229 (47%), Gaps = 11/229 (4%)

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV--TVLGALAA 219
           A  +FD+   RD  S+ +L+ G ++     EA  LF  ++  G+     +  +VL   A 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 220 -CGHLGAWKEGDKIH-EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
            C  L     G ++H + I+   LD +V V  +++D Y K         VFD +K R ++
Sbjct: 110 LCDELF----GRQLHCQCIKFGFLD-DVSVGTSLVDTYMKGSNFKDGRNVFDEMKER-NV 163

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           VTW T++  +A +      L LF +M   G +P+  ++ AAL      G+   G+++   
Sbjct: 164 VTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTV 223

Query: 338 MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           +   G+   +    S+++L  + G +++A  +     + + +V W +++
Sbjct: 224 VVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS-VVTWNSMI 271


>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Brachypodium distachyon]
          Length = 580

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/565 (38%), Positives = 338/565 (59%), Gaps = 11/565 (1%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           +KQ  A L  TG   S+  P+ +K+      +      YAH +     A  +  F+++ R
Sbjct: 23  LKQAHARLVVTGH--SRCLPLITKLANLAVAA--GAAPYAHLVATSHPASDSFLFSSLAR 78

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
              H   P  A+ +YR +L  +    +   +   KACA + AL   + +H+H +  GF +
Sbjct: 79  AATHQGLPLAALAFYRCLLSAALPFSSFAFTAVAKACADLSALRTGMTVHAHSILLGFGS 138

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  + T L+ +Y+K G +  A+K+FD +  +++ +WNA+I+G  Q  LA + ++++K MK
Sbjct: 139 DRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGIEVYKEMK 198

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           +     P+ +T +  L+AC   GA   G ++   I  ER+D++V + +A+++MYA+CG++
Sbjct: 199 VAKAV-PDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSALVNMYARCGVV 257

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           DKA + FD ++  +++VTW +M+  + +HG G  A++L+  M   G  P+DV+++A L A
Sbjct: 258 DKARQWFDVLQ-ERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLSA 316

Query: 322 CNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM- 379
           C HAGL+ +G   F  M    G+ P ++HY S+VD+ GRAGRL+EA   ++  SM  D  
Sbjct: 317 CAHAGLITEGRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFIRD-SMPGDPG 375

Query: 380 -VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
             +W  +LGAC+++ +  +    + +L+ +   N    VLLSN+YA   +   V +VR  
Sbjct: 376 PEVWTAILGACKMHKNFSLGVEVAERLIRLEPENPSYHVLLSNIYALSGKMYHVEKVRNT 435

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           M  R +KK  G+S IE+GG  H F   +KSH K REIY+ L+E++ +I   GY   T  V
Sbjct: 436 MIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQKTREIYQYLEELVHRISAAGYMPETESV 495

Query: 499 LHDIGEEEKENALCYHSEKLAVAFGL-ISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           LH++ EEE+E AL YHSEKLAVA+GL +S    T ++V KNLRIC DCH  IK +S V N
Sbjct: 496 LHELEEEEREGALRYHSEKLAVAYGLMMSAGSTTPLRVIKNLRICSDCHLAIKFMSAVEN 555

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           REIIVRD+ RFH FKDG CSC +YW
Sbjct: 556 REIIVRDKHRFHHFKDGKCSCLEYW 580


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/569 (36%), Positives = 333/569 (58%), Gaps = 14/569 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQI--NAPSTNDFNAVL 80
           +++ A++    +  +  F V S +++ YA     ++  A  +F  +  +      +NA++
Sbjct: 139 REMHAYVIKDDELAANSF-VASALVDMYATH--EQVGKARQVFDMVPDSGKQLGMWNAMI 195

Query: 81  RGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
            G A +     A+ L+ R            T +  L ACAR  A      +H +V++ G 
Sbjct: 196 CGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGM 255

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG-LAQGNLASEAVDLFK 198
             +  +   L+D+YA++G+   A+++F  + + D+ SWN LI G + QG++A +A  L +
Sbjct: 256 AGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVA-DAFQLAR 314

Query: 199 RMKM--EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
            M+   EG   PN +T++  L  C  L A   G +IH Y     LD +V V +A++DMYA
Sbjct: 315 EMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYA 374

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSY 315
           KCG L  +  VFD +  R++ +TWN ++MA+ +HG G  A  LF++M  +G  +P++V++
Sbjct: 375 KCGCLALSRAVFDRLP-RRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTF 433

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +AAL AC+H+G+VD G++LF++M  + GV+P       VVD+LGRAGRL EA  +V S+ 
Sbjct: 434 MAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSME 493

Query: 375 MGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
            G   V  W T+LGAC+L+ +V + EIA  +L+E+       +VLL N+Y+A  +W    
Sbjct: 494 AGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAA 553

Query: 434 RVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAA 493
            VR  M+ R V K PG S+IEV G IH+F   + +H    E++  ++ +  ++   GY  
Sbjct: 554 EVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTP 613

Query: 494 GTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
            TSCVLHD+ + +K   L  HSEKLA+AFGL+  +   +I+V KNLR+C DCH+  K +S
Sbjct: 614 DTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLS 673

Query: 554 KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K+  REI++RD  RFH F++G CSC DYW
Sbjct: 674 KMVGREIVLRDVRRFHHFRNGQCSCGDYW 702



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 168/363 (46%), Gaps = 11/363 (3%)

Query: 71  PSTND---FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET 127
           P   D   +N ++  L  S     AV     M+    R D +T + AL AC+R+  L   
Sbjct: 79  PGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVG 138

Query: 128 LQIHSHVLRHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEM--GVRDIASWNALIAGL 184
            ++H++V++   L A++ + + L+D+YA   ++  A++VFD +    + +  WNA+I G 
Sbjct: 139 REMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGY 198

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           AQ  +  EA+ LF RM+ E  F P E T+   L AC    A+   + +H Y+ +  +  N
Sbjct: 199 AQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGN 258

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL---FE 301
             V NA++DMYA+ G  D A  +F  +     +V+WNT++    V G    A +L    +
Sbjct: 259 RFVQNALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREMQ 317

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           Q+   GV P+ ++ +  L  C        G  +        +  ++    ++VD+  + G
Sbjct: 318 QLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCG 377

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
            L  +  +   +    + + W  L+ A  ++G    A +   ++   G     +   ++ 
Sbjct: 378 CLALSRAVFDRLPR-RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAA 436

Query: 422 LYA 424
           L A
Sbjct: 437 LAA 439



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 152/321 (47%), Gaps = 13/321 (4%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQI----HSHVLRHGFLA--DALLGTTLLDV 152
           ML G H   + T    L+A + + A    +++    H+  L++G L          LL +
Sbjct: 1   MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSM 60

Query: 153 YAKVGEIVSAKKVFD--EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE 210
           YA++G +  A+++F     G  D+ +WN +++ L Q  +  EAV     M   GV +P+ 
Sbjct: 61  YARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGV-RPDG 119

Query: 211 VTVLGALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
           VT   AL AC  L     G ++H Y I+++ L  N  V +A++DMYA    + KA +VFD
Sbjct: 120 VTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFD 179

Query: 270 NIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGL 327
            +    K L  WN M+  +A  G    AL LF +M   AG  P + +  + L AC  +  
Sbjct: 180 MVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEA 239

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
                 +   +   G+  N     +++D+  R G+   A  I   V +  D+V W TL+ 
Sbjct: 240 FAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLIT 298

Query: 388 ACQLYGDVEMAEIASRKLVEM 408
            C + G V  A   +R++ ++
Sbjct: 299 GCVVQGHVADAFQLAREMQQL 319



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 8/171 (4%)

Query: 249 NAVIDMYAKCGLLDKAFEVFDN-IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
           NA++ MYA+ GL+  A  +F      R  +VTWNTMV      G    A++    M   G
Sbjct: 55  NALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALG 114

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFN-SMANCGVKPNMKHYGSVVDLLG---RAGRL 363
           V+PD V++ +AL AC+   L+D G  +    + +  +  N     ++VD+     + G+ 
Sbjct: 115 VRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKA 174

Query: 364 QEACDIVKSVSMGTDMVLWQTLL-GACQLYGDVEMAEIASRKLVEMGSNNC 413
           ++  D+V     G  + +W  ++ G  Q   D E   + +R   E G   C
Sbjct: 175 RQVFDMVPDS--GKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPC 223


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/545 (37%), Positives = 312/545 (57%), Gaps = 42/545 (7%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G  H      A+   R+M     + D +T +  + ACA V +     Q+H+++L
Sbjct: 257 WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYIL 316

Query: 136 R------HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA---------- 179
           +      H F     +   L+ +Y K  ++  A+K+F  M VR+I +WNA          
Sbjct: 317 KNELNPNHSFCLS--VSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGR 374

Query: 180 ---------------------LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
                                +I+GLAQ     E + LFK+M+++G F+P +    GAL 
Sbjct: 375 MEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDG-FEPCDFAFAGALT 433

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC  LGA + G ++H  +     + ++ V NA+I MYAKCG+++ A  VF  +     LV
Sbjct: 434 ACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLV 492

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +WN+M+ A   HG G +A+ELF+QM + GV PD +++L  L AC+HAGLV+ G   FNSM
Sbjct: 493 SWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSM 552

Query: 339 -ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
             + G+ P   HY  +VDL  RAG    A  ++ S+       +W+ LL  C+++G++++
Sbjct: 553 LESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDL 612

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
              A+ +L ++   N G +VLLSN+YA   RW++V +VRK M+++ V+K P  S+IEV  
Sbjct: 613 GIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVEN 672

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            +H F   D  H +   +Y  L+++  ++K+ GY   T  VLHD+  E+KE+AL  HSEK
Sbjct: 673 KVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEK 732

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LAV FG++      +++VFKN+RIC DCH+  K +SKV  REIIVRDR RFH FK+G CS
Sbjct: 733 LAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCS 792

Query: 578 CKDYW 582
           C+DYW
Sbjct: 793 CRDYW 797



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 119/500 (23%), Positives = 211/500 (42%), Gaps = 126/500 (25%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQ 67
           LQ CS     S    + + AH+  +G      F   ++++E Y  S  + L YA  LF +
Sbjct: 18  LQLCSPQDPASFSLARAVHAHMIASGFKPRGHF--LNRLLEMYCKS--SNLVYARQLFEE 73

Query: 68  INAPS---------------------------------TNDFNAVLRGLAHSSKPTNAVL 94
           I  P                                  +  +NA++ G AH+    +A+ 
Sbjct: 74  IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALE 133

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALF-----ETLQIHSHVLRHGF--LADALLGT 147
            +R M R   R D  T +  L A    L LF     +  Q+H  V++ G   ++ ++L  
Sbjct: 134 LFRAMRRDDFRPDDFTFTSVLSA----LVLFVGNEQQCGQMHCAVVKTGMGCVSSSVL-N 188

Query: 148 TLLDVYAK--------VGEIVSAKKVFDEMGVRDI------------------------- 174
            LL VY K           +VSA+K+FDEM  RD                          
Sbjct: 189 ALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEA 248

Query: 175 ------ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
                 A+WNA+I+G        EA+ L ++M+  G+ + +++T    ++AC ++G+++ 
Sbjct: 249 MVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGI-QFDDITYTTIISACANVGSFQM 307

Query: 229 GDKIHEYIREERLDMNVVVC----NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN--- 281
           G ++H YI +  L+ N   C    NA+I +Y K   +D+A ++F  +  R +++TWN   
Sbjct: 308 GKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAIL 366

Query: 282 ----------------------------TMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313
                                        M+   A +G G   L+LF+QM   G +P D 
Sbjct: 367 SGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDF 426

Query: 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
           ++  AL AC+  G +++G +L   + + G + ++    +++ +  + G + EA + V   
Sbjct: 427 AFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCG-VVEAAESVFVT 485

Query: 374 SMGTDMVLWQTLLGACQLYG 393
               D+V W +++ A   +G
Sbjct: 486 MPSVDLVSWNSMIAALGQHG 505



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 8/247 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A + F ++   +      ++ GLA +      +  ++QM            + AL AC+ 
Sbjct: 378 AKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSV 437

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL    Q+H+ ++  G+ +   +G  ++ +YAK G + +A+ VF  M   D+ SWN++
Sbjct: 438 LGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSM 497

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IA L Q     +A++LF +M  EGVF P+ +T L  L AC H G  ++G     Y     
Sbjct: 498 IAALGQHGHGVKAIELFDQMLKEGVF-PDRITFLTVLTACSHAGLVEKG---RHYFNSML 553

Query: 241 LDMNVVVCN----AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
               +  C      ++D++ + G+   A  V D++  +     W  ++    +HG+    
Sbjct: 554 ESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLG 613

Query: 297 LELFEQM 303
           +E  EQ+
Sbjct: 614 IEAAEQL 620


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/610 (35%), Positives = 335/610 (54%), Gaps = 37/610 (6%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIE-------------- 48
            L  +L+  SSNG VS    KQ+   +   G F+S L  V S ++               
Sbjct: 141 TLMTMLKLSSSNGHVSLG--KQIHGQVIKLG-FESYLL-VGSPLLYMYANVGCISDAKKV 196

Query: 49  FYALSPLNELAY---------------AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAV 93
           FY L   N + Y               A  LFR +   S + + A+++GLA +     A+
Sbjct: 197 FYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVS-WAAMIKGLAQNGLAKEAI 255

Query: 94  LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153
             +R+M     + D       L AC  + A+ E  QIH+ ++R  F     +G+ L+D+Y
Sbjct: 256 ECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMY 315

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
            K   +  AK VFD M  +++ SW A++ G  Q   A EAV +F  M+  G+  P+  T+
Sbjct: 316 CKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGI-DPDHYTL 374

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
             A++AC ++ + +EG + H       L   V V N+++ +Y KCG +D +  +F+ +  
Sbjct: 375 GQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV 434

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
           R + V+W  MV A+A  G     ++LF++M + G+KPD V+    + AC+ AGLV+ G R
Sbjct: 435 RDA-VSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQR 493

Query: 334 LFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            F  M +  G+ P++ HY  ++DL  R+GRL+EA   +  +    D + W TLL AC+  
Sbjct: 494 YFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNK 553

Query: 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSY 452
           G++E+ + A+  L+E+  ++   + LLS++YA+  +WD V ++R+ M+ ++VKK PG S+
Sbjct: 554 GNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSW 613

Query: 453 IEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALC 512
           I+  G +H F   D+S     +IY KL+E+  KI + GY   TS V HD+ E  K   L 
Sbjct: 614 IKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLN 673

Query: 513 YHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
           YHSE+LA+AFGLI       I+V KNLR+C DCH+  K IS V  REI+VRD VRFHRFK
Sbjct: 674 YHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFK 733

Query: 573 DGACSCKDYW 582
           DG CSC D+W
Sbjct: 734 DGTCSCGDFW 743



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 203/437 (46%), Gaps = 44/437 (10%)

Query: 36  QSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLW 95
           Q  LF   + ++ +     ++E+    + F ++       +N ++ G + S     AV  
Sbjct: 69  QPNLFSWNNLLLAYSKAGLISEM---ESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKA 125

Query: 96  YRQMLRG-SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
           Y  M+R  S     +T    LK  +    +    QIH  V++ GF +  L+G+ LL +YA
Sbjct: 126 YNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYA 185

Query: 155 KVGEIVSAKKVFDEMGVR------------------------------DIASWNALIAGL 184
            VG I  AKKVF  +  R                              D  SW A+I GL
Sbjct: 186 NVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGL 245

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           AQ  LA EA++ F+ MK++G+ K ++      L ACG LGA  EG +IH  I       +
Sbjct: 246 AQNGLAKEAIECFREMKVQGL-KMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDH 304

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + V +A+IDMY KC  L  A  VFD +K +K++V+W  MV+ +   G    A+++F  M 
Sbjct: 305 IYVGSALIDMYCKCKCLHYAKTVFDRMK-QKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQ 363

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
           R+G+ PD  +   A+ AC +   +++G +        G+   +    S+V L G+ G + 
Sbjct: 364 RSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDID 423

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGD-VEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
           ++  +   +++  D V W  ++ A   +G  VE  ++   K+V+ G     D V L+ + 
Sbjct: 424 DSTRLFNEMNV-RDAVSWTAMVSAYAQFGRAVETIQLFD-KMVQHGLKP--DGVTLTGVI 479

Query: 424 AAYERWDDVGRVRKAMK 440
           +A  R    G V K  +
Sbjct: 480 SACSR---AGLVEKGQR 493


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/585 (36%), Positives = 336/585 (57%), Gaps = 16/585 (2%)

Query: 3   NLNALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA 59
           +L  L++ C  +G   H   IH + ++AH          LF V + +   YA   L  L 
Sbjct: 66  SLTRLVKLCVRHGTADHGRLIH-RHVEAHGPLPHDGAGGLF-VSNSLASMYAKFGL--LD 121

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHS-SKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
            A  +F  +   +   +  V+  LA +  +   A+ +   M R     +A T S  L AC
Sbjct: 122 DALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGAC 181

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
                L     +H+  ++ G  +D  + ++L+D Y K+G++   ++VFDEM  RD+  WN
Sbjct: 182 TTPGML---TAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWN 238

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ++IAG AQ      A++LF RMK  G F  N+ T+   L AC  +   + G ++H ++  
Sbjct: 239 SIIAGFAQSGDGVGAIELFMRMKDAG-FSSNQGTLTSVLRACTGMVMLEAGRQVHAHVL- 296

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            + D ++++ NA++DMY KCG L+ A  +F  +  ++ +++W+TMV   A +G    AL 
Sbjct: 297 -KYDRDLILHNALLDMYCKCGSLEDADALFHRMP-QRDVISWSTMVSGLAQNGKSVEALR 354

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLL 357
           +F+ M   GV P+ V+ +  L AC+HAGLV+DG   F SM    G++P  +H+  +VDLL
Sbjct: 355 VFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLL 414

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           GRAG+L EA + +  +S+  D V+W+TLLGAC+++ +  +A  A+R+++++  ++ G  V
Sbjct: 415 GRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARV 474

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN YA   +W D  +  KAM++R ++K PG S+IE+   +H F   D SH     I +
Sbjct: 475 LLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQ 534

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
           +L+ ++ +IK  GY   T  VL D+  E+KE+ L YHSEK+A+ FG +   +   I++ K
Sbjct: 535 ELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGTMHAVDGKPIRIMK 594

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLRIC DCH   KL+SK   R I++RD VRFH F+DGACSC DYW
Sbjct: 595 NLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639


>gi|77553572|gb|ABA96368.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 605

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/456 (40%), Positives = 286/456 (62%), Gaps = 12/456 (2%)

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ--------GN 188
           H    D +LG  LL V+A+ G I S ++VFD +   D+ +WNAL++  A+          
Sbjct: 152 HAASCDRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACAT 211

Query: 189 LASEAV-DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
            A++A+ +LF RM +    +PNE+T++  + ACG LGA   G   H Y  + RL +N +V
Sbjct: 212 SAADAILELFVRM-LSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIV 270

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
             A+++MYA CG LD A +VF     R +   +N M+   AVHG G  AL L ++M  AG
Sbjct: 271 ATALVEMYAGCGRLDLAEQVFAAASDRDTR-CYNAMLHGLAVHGHGRAALSLLDRMHGAG 329

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           V  D V+ L+ +CAC HAGLVD+G+  F+ M    G++P ++HYG ++D+L RAGRL  A
Sbjct: 330 VPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNA 389

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426
             ++  + +  +  ++++L+ AC ++G +E+ E    +L+ +  ++ G+ VL+SN YA  
Sbjct: 390 EKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYART 449

Query: 427 ERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKI 486
            RW+D  + RK MK+  + K PG S +++ GV+H+F   DK+H   +EIY  ++EI  ++
Sbjct: 450 NRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRL 509

Query: 487 KEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCH 546
            E G  + TS  L D+ EE+K + L YHSE+LA+AF LI+++    I++ KNLR+C DCH
Sbjct: 510 IECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCH 569

Query: 547 DVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +  KL+S+VY REI++RDR RFH F+DG CSC D+W
Sbjct: 570 ESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 605


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/587 (36%), Positives = 339/587 (57%), Gaps = 15/587 (2%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYAL-SPLNELAYA 61
           +++  L  C S  ++ H   ++L  HL  +     +   +++K+I  Y++   +NE   A
Sbjct: 72  SISLFLHACISRRSLEHG--RKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNE---A 126

Query: 62  HALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
             +F QI+    P    + A+  G + +     A+L YR ML    +      S ALKAC
Sbjct: 127 RRVF-QIDDEKPPEEPVWVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKAC 185

Query: 119 ARVLALFETLQIHSHVLRHGF-LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           + +        IH+ +++H    AD ++   LL +Y ++G      KVF+EM  R++ SW
Sbjct: 186 SDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSW 245

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N LIAG A      E +  F+ M+ EG+   + +T+   L  C  + A   G +IH  I 
Sbjct: 246 NTLIAGFAGQGRVFETLSAFRVMQREGM-GFSWITLTTMLPVCAQVTALHSGKEIHGQIL 304

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           + R + +V + N+++DMYAKCG +    +VFD +   K L +WNTM+  F+++G    AL
Sbjct: 305 KSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMH-SKDLTSWNTMLAGFSINGQIHEAL 363

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF-NSMANCGVKPNMKHYGSVVDL 356
            LF++M R G++P+ ++++A L  C+H+GL  +G RLF N M + GV+P+++HY  +VD+
Sbjct: 364 CLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDI 423

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           LGR+G+  EA  + +++ M     +W +LL +C+LYG+V +AE+ + +L E+  NN G++
Sbjct: 424 LGRSGKFDEALSVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNY 483

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           V+LSN+YA    W+DV RVR+ M    +KK  G S+I++   IH F     S  +    Y
Sbjct: 484 VMLSNIYANAGMWEDVKRVREMMALTGMKKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEY 543

Query: 477 EKL-DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
           +K+ +E+   +K  GY   T  VLHDI EE K   +C HSE+LA  F LI+T     I++
Sbjct: 544 KKIWNELSNAVKNLGYVPNTGVVLHDINEEMKAVWVCEHSERLAAVFALINTGAGMPIRI 603

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH  +K +SKV  R I++RD  RFH F++G+CSCKDYW
Sbjct: 604 TKNLRVCVDCHSWMKAVSKVTRRLIVLRDTNRFHHFENGSCSCKDYW 650


>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
 gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
          Length = 448

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/445 (42%), Positives = 279/445 (62%), Gaps = 2/445 (0%)

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           G  A+ ++GT+L+++Y +   + +A+ VF+ +  +D  +WNA++   AQ     EA+++F
Sbjct: 6   GLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIF 65

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
           +RM+ EGV K    T +  L AC    A   G  IH+ +    LD  ++V  A+++MYAK
Sbjct: 66  QRMQQEGV-KTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMYAK 124

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           CG L +A EVFD ++    +V W  +V   A HG    + +L  +M   G+KP++V++L+
Sbjct: 125 CGKLVEAREVFDQME-GMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFLS 183

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            + AC+H+G +D+    F +MA+ G  P  +H+  V+DLLGR GRL+EA +++ ++    
Sbjct: 184 LVFACSHSGYLDEARDCFIAMADHGFFPLPEHFRCVIDLLGRGGRLEEAQEVIDTMPFEP 243

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
            +  W T+L AC+L  DV  AEIA+ K  E+       ++L+SNLYAA ERWDDV +VR+
Sbjct: 244 GLTAWLTMLSACRLQKDVLRAEIAAEKCYEIEPTRPSAYLLMSNLYAALERWDDVKKVRR 303

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            M+ R VKK PG S IEV   +H+F  ++KSH +   IYE+L ++  +IKE GY   TS 
Sbjct: 304 LMERRGVKKEPGLSCIEVKNRLHEFGAANKSHPQKDLIYEELRKLTLEIKEAGYVPDTSL 363

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           VLH++ EE K+  L +HSE+LAV +GLI+T   TS+ V  NLR+C DCH   K IS + N
Sbjct: 364 VLHNVDEETKQATLFHHSERLAVVYGLINTPPGTSLCVVNNLRMCSDCHTAFKYISTISN 423

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           REI+VRD  RFH F  G CSCKDYW
Sbjct: 424 REIVVRDANRFHTFATGGCSCKDYW 448



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 1/239 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  +F +I       +NA++   A       A+  +++M +   ++ + T    L+A
Sbjct: 27  LGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIFQRMQQEGVKTGSATFISVLEA 86

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA   AL     IH +++ +G   + ++ T L+++YAK G++V A++VFD+M   D+ +W
Sbjct: 87  CASTSALALGRVIHQNLVANGLDRELIVATALVNMYAKCGKLVEAREVFDQMEGMDVVAW 146

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            A++AG AQ     E+ DL +RM++EG+ KPN VT L  + AC H G   E       + 
Sbjct: 147 TAIVAGSAQHGHIEESKDLMRRMELEGI-KPNNVTFLSLVFACSHSGYLDEARDCFIAMA 205

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           +            VID+  + G L++A EV D +     L  W TM+ A  +  D  RA
Sbjct: 206 DHGFFPLPEHFRCVIDLLGRGGRLEEAQEVIDTMPFEPGLTAWLTMLSACRLQKDVLRA 264


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/479 (39%), Positives = 295/479 (61%), Gaps = 5/479 (1%)

Query: 107  DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK--VGEIVSAKK 164
            D ++ +  +  CAR     + L++   +   G   DA    +LL       +  +   K+
Sbjct: 1191 DVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKE 1250

Query: 165  VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
            +F ++  + + SWN +IA     ++ +EAVD+F +M+   V  P+ +++   L ACG L 
Sbjct: 1251 MFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAV-DPDAISIASVLPACGDLS 1309

Query: 225  AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
            A   G +IHEY+  +RL  N+++ NA+IDMYAKCG L+ A EVFD +K R  +V+W +M+
Sbjct: 1310 ALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFR-DVVSWTSMI 1368

Query: 285  MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGV 343
             A+ ++G G  A+ LF +M   G+ PD +++++ L AC+HAGL+D+G   F  M   C +
Sbjct: 1369 SAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKI 1428

Query: 344  KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
             P ++H+  +VDLLGRAG++ EA   +K + M  +  +W  LL AC++Y ++ +  +A+ 
Sbjct: 1429 VPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAAD 1488

Query: 404  KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
            +L ++     G +VLLSN+YA   RW+DV  VR  MK + +KK+PG S  E+   +H F 
Sbjct: 1489 QLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFL 1548

Query: 464  TSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFG 523
              D+SH + ++IYE+LD ++ K+KE GY   T   LHD+ EE+KE  L  HSEKLA+AF 
Sbjct: 1549 AGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFA 1608

Query: 524  LISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +++T+  + I++ KNLR+C DCH   KLISK+  REI +RD  RFH F +G CSC DYW
Sbjct: 1609 ILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 160/348 (45%), Gaps = 36/348 (10%)

Query: 64   LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
            +F +I   +   FN ++R   ++   ++A+L ++ M       D  T    LKA +    
Sbjct: 1082 IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 1141

Query: 124  LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
            L+  +QIH+ V+R G   +  +G  L+ +Y K G +V A +V DZM  RD+ SWN+L+AG
Sbjct: 1142 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAG 1201

Query: 184  LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             A+     +A+++ K M++ G+ KP+  T+   L A                        
Sbjct: 1202 CARNGQFDDALEVCKEMELLGL-KPDAGTMASLLPA------------------------ 1236

Query: 244  NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
               V N  +D       + + F    N    KSLV+WN M+  +  +     A+++F QM
Sbjct: 1237 ---VTNTCLD---NVSFVKEMFMKLAN----KSLVSWNVMIAVYMNNSMPAEAVDIFLQM 1286

Query: 304  GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
                V PD +S  + L AC     +  G R+   +    ++PN+    +++D+  + G L
Sbjct: 1287 EDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCL 1346

Query: 364  QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            + A ++   +    D+V W +++ A  + G    A     ++ ++G N
Sbjct: 1347 EYAREVFDQMKF-RDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLN 1393



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 10/243 (4%)

Query: 55   LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
            L+ +++   +F ++   S   +N ++    ++S P  AV  + QM   +   DA++ +  
Sbjct: 1242 LDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASV 1301

Query: 115  LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
            L AC  + AL    +IH +V+R     + LL   L+D+YAK G +  A++VFD+M  RD+
Sbjct: 1302 LPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDV 1361

Query: 175  ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
             SW ++I+         +AV LF RM+  G+  P+ +  +  L+AC H G   EG    +
Sbjct: 1362 VSWTSMISAYGMNGKGRDAVSLFSRMQDLGL-NPDSIAFVSVLSACSHAGLLDEGRYYFK 1420

Query: 235  YIREE-----RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
             + EE     R++    VC  ++D+  + G +D+A+     +    +   W  ++ A  V
Sbjct: 1421 LMTEECKIVPRIEH--FVC--MVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRV 1476

Query: 290  HGD 292
            + +
Sbjct: 1477 YSN 1479



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 7/212 (3%)

Query: 129  QIHSHV-LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
            ++HS + + H   ++  LG  L+  YA  GE  S + +FDE+  +++  +N +I      
Sbjct: 1045 KLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNN 1104

Query: 188  NLASEAVDLFKRMKMEGVFKPNEVTVLGAL-AACGHLGAWKEGDKIHEYIREERLDMNVV 246
            +L S+A+ +FK M   G+  P+  T    L A+ G    W  G +IH  +    LD+NV 
Sbjct: 1105 HLYSDALLVFKNMAGHGI-DPDHYTYPCVLKASSGSEDLWV-GMQIHAAVVRVGLDLNVF 1162

Query: 247  VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
            V N +I MY KCG L +A  V D + CR  +V+WN++V   A +G    ALE+ ++M   
Sbjct: 1163 VGNGLISMYGKCGCLVEACRVLDZMPCR-DVVSWNSLVAGCARNGQFDDALEVCKEMELL 1221

Query: 307  GVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
            G+KPD  +  + L A  +  L  D V     M
Sbjct: 1222 GLKPDAGTMASLLPAVTNTCL--DNVSFVKEM 1251


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/582 (36%), Positives = 336/582 (57%), Gaps = 14/582 (2%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAH-LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           A+L   +++GAV     K +Q H +       S +F V + ++  Y+ S +  ++ A A+
Sbjct: 198 AVLGGLAADGAVE----KGVQVHTMVIKSGLDSTIF-VGNSMVNMYSKSLM--VSDAKAV 250

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKACARVLA 123
           F  +   +   +N+++ G   +     A  L+YR  L G   +  +  +  +K CA +  
Sbjct: 251 FDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFAT-VIKLCANIKE 309

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM-GVRDIASWNALIA 182
           +    Q+H  V+++G   D  + T L+  Y+K  EI  A K+F  M GV+++ SW A+I+
Sbjct: 310 MSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIIS 369

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG-HLGAWKEGDKIHEYIREERL 241
           G  Q      A++LF +M+ E   +PNE T    L AC     + ++G + H    +   
Sbjct: 370 GYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGF 429

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
              + V +A++ MYAK G ++ A EVF   +  + LV+WN+M+  +A HG G ++L++FE
Sbjct: 430 SNALCVSSALVTMYAKRGNIESANEVFKR-QVDRDLVSWNSMISGYAQHGCGKKSLKIFE 488

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRA 360
           +M    ++ D ++++  + AC HAGLV++G R F+ M  +  + P M+HY  +VDL  RA
Sbjct: 489 EMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRA 548

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L++A D++  +       +W+TLL AC+++ +V++ E+A+ KL+ +   +   +VLLS
Sbjct: 549 GMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLS 608

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA    W +  +VRK M  + VKK  G+S+IEV      F   D SH +   IY KL+
Sbjct: 609 NIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLE 668

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           E+  ++K+ GY   T  VLHD+ EE KE  L  HSE+LA+AFGLI+T   T IQ+ KNLR
Sbjct: 669 ELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLR 728

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +C DCH VIKLISK+  R+I+VRD  RFH FK G+CSC DYW
Sbjct: 729 VCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 138/263 (52%), Gaps = 2/263 (0%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           ++  LF +      +  N +L   + + +   A+  +  + R    +D  + S  LK C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            +       Q+H   ++ GF+ D  +GT+L+D+Y K   +   ++VFDEM V+++ SW +
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           L+AG  Q  L  +A+ LF +M++EG+ KPN  T    L      GA ++G ++H  + + 
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGI-KPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            LD  + V N++++MY+K  ++  A  VFD+++ R + V+WN+M+  F  +G    A EL
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNA-VSWNSMIAGFVTNGLDLEAFEL 281

Query: 300 FEQMGRAGVKPDDVSYLAALCAC 322
           F +M   GVK     +   +  C
Sbjct: 282 FYRMRLEGVKLTQTIFATVIKLC 304



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 123/248 (49%), Gaps = 6/248 (2%)

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG-ALAAC 220
           ++++FDE   + ++  N L+   ++ +   EA++LF  ++  G   P + + L   L  C
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSG--SPTDGSSLSCVLKVC 102

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
           G L     G ++H    +     +V V  +++DMY K   ++    VFD ++  K++V+W
Sbjct: 103 GCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRV-KNVVSW 161

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340
            +++  +  +G   +AL+LF QM   G+KP+  ++ A L      G V+ GV++   +  
Sbjct: 162 TSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIK 221

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG-DVEMAE 399
            G+   +    S+V++  ++  + +A  +  S+    + V W +++      G D+E  E
Sbjct: 222 SGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAGFVTNGLDLEAFE 280

Query: 400 IASRKLVE 407
           +  R  +E
Sbjct: 281 LFYRMRLE 288


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/527 (36%), Positives = 323/527 (61%), Gaps = 5/527 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           + Y+  +F ++       +  ++   A SS+   A+  +R+  +   + D +     L+A
Sbjct: 417 IEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEA 476

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C+ +  +    Q+H + +R+G L D ++   ++D+Y + GE+  + K+F+ +  +DI +W
Sbjct: 477 CSGLETILLAKQLHCYAIRNGLL-DLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTW 535

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            ++I   A   L +EA+ LF  M+   V +P+ V ++  L A G L +  +G ++H ++ 
Sbjct: 536 TSMINCYANSGLLNEALVLFAEMQSTDV-QPDSVALVSILGAIGGLSSLAKGKEVHGFLI 594

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
                M   + ++++DMY+ CG L  A +VF+ +KC K +V W  M+ A  +HG G +A+
Sbjct: 595 RRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKC-KDMVLWTAMINATGMHGHGKQAI 653

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG-VRLFNSMANCGVKPNMKHYGSVVDL 356
           +LF++M + GV PD VS+LA L AC+H+ LV++G   L   M+   ++P  +HY  VVDL
Sbjct: 654 DLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDL 713

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           LGR+G+ +EA + +KS+ +    V+W +LLGAC+++ + E+A +A+ +L+E+  +N G++
Sbjct: 714 LGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNY 773

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VL+SN++A   +W++   VR  +  R ++K P  S+IE+G  +H F T D SH     I 
Sbjct: 774 VLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERIN 833

Query: 477 EKLDEIMFKI-KEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
            KL EI  ++ KE GY   T  VLHD+ EEEK + L  HSE+LA++FGLI+T     +++
Sbjct: 834 LKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPGMPLRI 893

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH+  KL+SK+++R+I+VRD  RFH F  G+CSC D+W
Sbjct: 894 AKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 171/348 (49%), Gaps = 8/348 (2%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +FR+I+      +N++L     +     A+ +  +MLRG  + D   C  +L +    L 
Sbjct: 322 VFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDH-ACIVSLSSAVGHLG 380

Query: 124 -LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            L    ++H++ ++    +D  +G TL+D+Y K   I  +  VFD M ++D  SW  +I 
Sbjct: 381 WLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIIT 440

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREERL 241
             AQ +   EA+++F+  + EG+ K + + +   L AC  L       ++H Y IR   L
Sbjct: 441 CYAQSSRHIEALEIFREAQKEGI-KVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLL 499

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           D+  VV N +ID+Y +CG +  + ++F+ ++ +K +VTW +M+  +A  G    AL LF 
Sbjct: 500 DL--VVKNRIIDIYGECGEVYHSLKMFETVE-QKDIVTWTSMINCYANSGLLNEALVLFA 556

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           +M    V+PD V+ ++ L A      +  G  +   +             S+VD+    G
Sbjct: 557 EMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCG 616

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            L  A  +  +V    DMVLW  ++ A  ++G  + A    +++++ G
Sbjct: 617 SLSGALKVFNAVKC-KDMVLWTAMINATGMHGHGKQAIDLFKRMLQTG 663



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 135/268 (50%), Gaps = 6/268 (2%)

Query: 123 ALFETLQIHSHVLRHGFLA--DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           A+ + +Q+H+H +  G L   D  L T LL +Y K G +  A+ +FD M  R + SWNAL
Sbjct: 73  AVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNAL 132

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGV--FKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           I        A EA+ +++ M++       P+  T+   L A G  G  + G ++H    +
Sbjct: 133 IGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVK 192

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             LD +  V NA+I MYAKCG+LD A  VF+ +   + + +WN+M+     +G   +AL+
Sbjct: 193 HGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALD 252

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LF  M RA +  +  + +  L  C     ++ G  L  ++   G + N++    +V +  
Sbjct: 253 LFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLV-MYT 311

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           + GR+  A  + + +    D + W ++L
Sbjct: 312 KCGRVDSALRVFREIDE-KDYISWNSML 338



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 157/316 (49%), Gaps = 15/316 (4%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N+++ G   +     A+  +R M R     ++ T    L+ C  +  L    ++H+ +L
Sbjct: 234 WNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALL 293

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + G   + +    LL +Y K G + SA +VF E+  +D  SWN++++   Q  L +EA++
Sbjct: 294 KSGSEVN-IQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIE 352

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
               M + G F+P+   ++   +A GHLG    G ++H Y  ++RLD +  V N ++DMY
Sbjct: 353 FISEM-LRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMY 411

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            KC  ++ +  VFD ++  K  ++W T++  +A       ALE+F +  + G+K D +  
Sbjct: 412 MKCRYIEYSAHVFDRMRI-KDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMI 470

Query: 316 LAALCACNHAGLVDDGVRLF-----NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
            + L AC+    +    +L      N + +  VK        ++D+ G  G +  +  + 
Sbjct: 471 GSILEACSGLETILLAKQLHCYAIRNGLLDLVVK------NRIIDIYGECGEVYHSLKMF 524

Query: 371 KSVSMGTDMVLWQTLL 386
           ++V    D+V W +++
Sbjct: 525 ETVEQ-KDIVTWTSMI 539



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 15/291 (5%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           + ++L+ CS  G  + +  KQL  +    G        V+++II+ Y      E+ ++  
Sbjct: 470 IGSILEACS--GLETILLAKQLHCYAIRNGLLD---LVVKNRIIDIYG--ECGEVYHSLK 522

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F  +       + +++   A+S     A++ + +M     + D++     L A   + +
Sbjct: 523 MFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSS 582

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L +  ++H  ++R  F  +  + ++L+D+Y+  G +  A KVF+ +  +D+  W A+I  
Sbjct: 583 LAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINA 642

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG----DKIHEYIREE 239
                   +A+DLFKRM   GV  P+ V+ L  L AC H     EG    D +    R E
Sbjct: 643 TGMHGHGKQAIDLFKRMLQTGV-TPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLE 701

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
               +      V+D+  + G  ++A+E   ++  +   V W +++ A  VH
Sbjct: 702 PWQEHYA---CVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVH 749



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 4/139 (2%)

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM---GRAGVKP 310
           MY KCG +  A  +FD +  R ++ +WN ++ A+   G    AL ++  M     +GV P
Sbjct: 104 MYGKCGRVADARLLFDGMSSR-TVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAP 162

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           D  +  + L A    G    G  +       G+  +     +++ +  + G L  A  + 
Sbjct: 163 DGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVF 222

Query: 371 KSVSMGTDMVLWQTLLGAC 389
           + +  G D+  W +++  C
Sbjct: 223 ELMHDGRDVASWNSMISGC 241


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/534 (37%), Positives = 310/534 (58%), Gaps = 5/534 (0%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           A +    L +A  +F  +N  S + +NAV+ G A +  P  A+ +Y +M R     D  +
Sbjct: 460 AYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFS 519

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
               L AC R+  L    +IH  VLR+G   ++ +  +LL +Y    +    +  F+ MG
Sbjct: 520 IVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMG 579

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            ++   WNA+++G +Q  L +EA+ LF++M  +G+ +P+E+ +   L AC  L A   G 
Sbjct: 580 DKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGL-EPDEIAIASILGACSQLSALGLGK 638

Query: 231 KIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
           ++H + ++   ++ N V C +++DMYAK G L  +  +F+ +   K + +WN M+  F V
Sbjct: 639 EVHCFALKNSLMEDNFVAC-SLMDMYAKSGFLGHSQRIFNRLN-GKEVASWNVMITGFGV 696

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMK 348
           HG G +A+ELFE M R+  +PD  ++L  L AC HAGLV +G+     M     ++P ++
Sbjct: 697 HGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELE 756

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
           HY  V+D+LGRAGRL EA + +  +    D  +W +LL +   Y D+EM E  + KL+ +
Sbjct: 757 HYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLAL 816

Query: 409 GSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKS 468
            +N    ++LLSNLYA   +WD V  VR+ MK+  ++K  G S+IE+ G ++ F   + S
Sbjct: 817 EANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENS 876

Query: 469 HVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTS 528
           +    EI +  + +  +I E GY    SCVLH++ E EK   L  HSEK+A+ FG ++T 
Sbjct: 877 NPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTK 936

Query: 529 EATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           E T++++ KNLRICRDCH+  K ISK   REI++RD  RFH FK G CSC DYW
Sbjct: 937 EGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 167/357 (46%), Gaps = 19/357 (5%)

Query: 58  LAYAHALFRQINAPSTNDFNAVL-----RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           L+ A  LFR+I   S   +N+++      G    +      +W  + L      + +T  
Sbjct: 364 LSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELM---EVNEVTIL 420

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
             L AC     L     +H + LRH F    L+    +  YAK G +V A+ VF  M  +
Sbjct: 421 NLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTK 480

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
            ++SWNA+I G AQ     +A+D +  M   G+  P++ +++  L ACG LG  + G +I
Sbjct: 481 SVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL-PDDFSIVSLLLACGRLGLLQYGKEI 539

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H ++    L+MN  V  +++ +Y  C         F+ +  + S V WN M+  ++ +  
Sbjct: 540 HGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNS-VCWNAMLSGYSQNEL 598

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNMKHY 350
              AL LF QM   G++PD+++  + L AC+    +  G  V  F ++ N  ++ N    
Sbjct: 599 PNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCF-ALKNSLMEDNFVA- 656

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD----VEMAEIASR 403
            S++D+  ++G L  +  I   ++ G ++  W  ++    ++G     VE+ E   R
Sbjct: 657 CSLMDMYAKSGFLGHSQRIFNRLN-GKEVASWNVMITGFGVHGQGNKAVELFEDMKR 712



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 160/326 (49%), Gaps = 16/326 (4%)

Query: 4   LNALLQKCSSNGAVSHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYALS--PLNELAY 60
           +  LLQKC   G   ++ I ++L   L  + QF    F + +++I  Y++   PL     
Sbjct: 110 MGMLLQKC---GQYKNVEIGRKLDEMLCVSSQFSGD-FVLNTRLITMYSICGYPLE---- 161

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACA 119
           +  +F ++   +   +NA++ G   +     A+  + +++  +  + D  T    +KAC 
Sbjct: 162 SRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACT 221

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
               +     +H   ++ G + D  +G  ++ +Y K G +  A ++FD+M  +++ SWN+
Sbjct: 222 GKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNS 281

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEG-VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           LI G ++     EA   F+ +   G    P+  T++  L  C   G    G  IH    +
Sbjct: 282 LIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK 341

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L   ++VCNA+IDMY+KCG L +A  +F  I+  KS+V+WN+M+ A++  G      +
Sbjct: 342 LGLVHELMVCNALIDMYSKCGCLSEAAILFRKIE-NKSVVSWNSMIGAYSREGFVFETFD 400

Query: 299 LFEQ--MGRAGVKPDDVSYLAALCAC 322
           L  +  M    ++ ++V+ L  L AC
Sbjct: 401 LLRKMWMEEELMEVNEVTILNLLPAC 426


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/534 (37%), Positives = 310/534 (58%), Gaps = 5/534 (0%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           A +    L +A  +F  +N  S + +NAV+ G A +  P  A+ +Y +M R     D  +
Sbjct: 460 AYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFS 519

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
               L AC R+  L    +IH  VLR+G   ++ +  +LL +Y    +    +  F+ MG
Sbjct: 520 IVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMG 579

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            ++   WNA+++G +Q  L +EA+ LF++M  +G+ +P+E+ +   L AC  L A   G 
Sbjct: 580 DKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGL-EPDEIAIASILGACSQLSALGLGK 638

Query: 231 KIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
           ++H + ++   ++ N V C +++DMYAK G L  +  +F+ +   K + +WN M+  F V
Sbjct: 639 EVHCFALKNSLMEDNFVAC-SLMDMYAKSGFLGHSQRIFNRLN-GKEVASWNVMITGFGV 696

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMK 348
           HG G +A+ELFE M R+  +PD  ++L  L AC HAGLV +G+     M     ++P ++
Sbjct: 697 HGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELE 756

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
           HY  V+D+LGRAGRL EA + +  +    D  +W +LL +   Y D+EM E  + KL+ +
Sbjct: 757 HYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLAL 816

Query: 409 GSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKS 468
            +N    ++LLSNLYA   +WD V  VR+ MK+  ++K  G S+IE+ G ++ F   + S
Sbjct: 817 EANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENS 876

Query: 469 HVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTS 528
           +    EI +  + +  +I E GY    SCVLH++ E EK   L  HSEK+A+ FG ++T 
Sbjct: 877 NPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTK 936

Query: 529 EATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           E T++++ KNLRICRDCH+  K ISK   REI++RD  RFH FK G CSC DYW
Sbjct: 937 EGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 167/357 (46%), Gaps = 19/357 (5%)

Query: 58  LAYAHALFRQINAPSTNDFNAVL-----RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           L+ A  LFR+I   S   +N+++      G    +      +W  + L      + +T  
Sbjct: 364 LSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELM---EVNEVTIL 420

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
             L AC     L     +H + LRH F    L+    +  YAK G +V A+ VF  M  +
Sbjct: 421 NLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTK 480

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
            ++SWNA+I G AQ     +A+D +  M   G+  P++ +++  L ACG LG  + G +I
Sbjct: 481 SVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL-PDDFSIVSLLLACGRLGLLQYGKEI 539

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H ++    L+MN  V  +++ +Y  C         F+ +  + S V WN M+  ++ +  
Sbjct: 540 HGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNS-VCWNAMLSGYSQNEL 598

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNMKHY 350
              AL LF QM   G++PD+++  + L AC+    +  G  V  F ++ N  ++ N    
Sbjct: 599 PNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCF-ALKNSLMEDNFVA- 656

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD----VEMAEIASR 403
            S++D+  ++G L  +  I   ++ G ++  W  ++    ++G     VE+ E   R
Sbjct: 657 CSLMDMYAKSGFLGHSQRIFNRLN-GKEVASWNVMITGFGVHGQGNKAVELFEDMKR 712



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 160/326 (49%), Gaps = 16/326 (4%)

Query: 4   LNALLQKCSSNGAVSHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYALS--PLNELAY 60
           +  LLQKC   G   ++ I ++L   L  + QF    F + +++I  Y++   PL     
Sbjct: 110 MGMLLQKC---GQYKNVEIGRKLDEMLCVSSQFSGD-FVLNTRLITMYSICGYPLE---- 161

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACA 119
           +  +F ++   +   +NA++ G   +     A+  + +++  +  + D  T    +KAC 
Sbjct: 162 SRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACT 221

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
               +     +H   ++ G + D  +G  ++ +Y K G +  A ++FD+M  +++ SWN+
Sbjct: 222 GKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNS 281

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEG-VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           LI G ++     EA   F+ +   G    P+  T++  L  C   G    G  IH    +
Sbjct: 282 LIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK 341

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L   ++VCNA+IDMY+KCG L +A  +F  I+  KS+V+WN+M+ A++  G      +
Sbjct: 342 LGLVHELMVCNALIDMYSKCGCLSEAAILFRKIE-NKSVVSWNSMIGAYSREGFVFETFD 400

Query: 299 LFEQ--MGRAGVKPDDVSYLAALCAC 322
           L  +  M    ++ ++V+ L  L AC
Sbjct: 401 LLRKMWMEEELMEVNEVTILNLLPAC 426


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 237/623 (38%), Positives = 345/623 (55%), Gaps = 63/623 (10%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ALL  C+S    S +H   ++A     G  Q K    R  +   YA S    L  A AL 
Sbjct: 35  ALLAGCASARRASELHAAAVRA-----GVDQDKAVDFR--LQRAYAAS--GRLDLAVALL 85

Query: 66  RQINAPSTNDFNAVL-----RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           R+   P+   + + +     RGL H++      L    +L       A T S +L AC  
Sbjct: 86  RRTPDPTAVFYTSAIHAHSSRGLHHAA----LALLSEMLLSHGLLPTAHTLSASLPACG- 140

Query: 121 VLALFETLQIHSHVLR-----HGFLADALLG---------------------------TT 148
              L     +H + ++       ++A ALLG                           T 
Sbjct: 141 --GLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTA 198

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           +L  YAK+G +  A+ +FD +  +D+  WNA++ G  Q    SEA+ LF+RM   GV +P
Sbjct: 199 MLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGV-EP 257

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYI---REERLDMNVVVCNAVIDMYAKCGLLDKAF 265
           +EV+V+ AL+A   LG  + G  +H ++      R+ +N  V  A+IDMY KCG L+ A 
Sbjct: 258 DEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAV 317

Query: 266 EVFDNIKC-RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
            VF ++    + +V WN MV  +A+HG    AL  F Q+   G+ P D++++  L AC+H
Sbjct: 318 AVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSH 377

Query: 325 AGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS-MGTDMVLW 382
           +GLVD+G  LF SMA   G++P ++HYG +VDLLGRAGR++EA ++V+S++    D V+W
Sbjct: 378 SGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMW 437

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
            +LL AC+L+ ++E+ +  +  LV  G  N G +VLLSN+YAA   W +VGRVR  M+  
Sbjct: 438 ASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRAS 497

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            ++K PG S +EVG  + +F   D+SH +  EIY KL+E+    +  G+   T  VLHD+
Sbjct: 498 GIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARGHVPRTELVLHDL 557

Query: 503 G---EEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
                  KE AL  HSEKLA+AFGLIST   T+I++ KNLR C DCH V+KL+S+V  R+
Sbjct: 558 DDDDTAAKEQALAVHSEKLALAFGLISTPPGTAIKIVKNLRACADCHAVLKLVSEVTGRK 617

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           I+ RDR RFH F DG+C+C DYW
Sbjct: 618 IVFRDRNRFHHFVDGSCTCGDYW 640


>gi|115440727|ref|NP_001044643.1| Os01g0819800 [Oryza sativa Japonica Group]
 gi|21104789|dbj|BAB93376.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534174|dbj|BAF06557.1| Os01g0819800 [Oryza sativa Japonica Group]
          Length = 646

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/528 (39%), Positives = 317/528 (60%), Gaps = 20/528 (3%)

Query: 69  NAPST--NDFNAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALKACARVLALF 125
             P+T    FN+++ G A    P      +R+M +    R DA+T    L A   V  L 
Sbjct: 125 TPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVT----LLALVPVAPLG 180

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS--AKKVFDEM--GVRDIASWNALI 181
              Q+H+   R G  A+  +   L+ VYA+ G   +  A++VF+EM    RD+ SWNA+I
Sbjct: 181 IVPQLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAVI 240

Query: 182 AGLAQGNLASEAVDLFKRMKME--GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE- 238
           +  AQ  LA EAV+L++RM+    G  +P+ VT++G L++C H GA + G  +  Y+R+ 
Sbjct: 241 SAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVERYVRDT 300

Query: 239 -ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
                 N+ +CNA+I+ +A+CG L +A E+FD +   +S+V+W T+++ + +HG G  A+
Sbjct: 301 IPGFRDNLPLCNALINFHARCGSLAQAQELFDEMP-ERSVVSWTTLIIGYGMHGQGDIAV 359

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPNMKHYGSVVD 355
           +LFE M      PD V+ +  L AC+HAG+ D+G + F++M    C ++P ++HY  +VD
Sbjct: 360 DLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYC-LRPKLEHYTCMVD 418

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LLGRAGRL EA +++ S+ M  D  +W  LLGAC+++ +VEM E A  ++V +   N G 
Sbjct: 419 LLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGY 478

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +VL++N+YA   + D V +VR AM+ R ++K PG SY+E  G +H F   D SH + R I
Sbjct: 479 YVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRI 538

Query: 476 YEKLDEIMFKIKE-YGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           YE + E+   +KE  G           + E      + +HSEKLAVAFGL++T   + I 
Sbjct: 539 YELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIV 598

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V KNLR+C DCH  +K IS++ NR  +VRD  RFHRF++GACSC+DYW
Sbjct: 599 VIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRDYW 646


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/457 (41%), Positives = 298/457 (65%), Gaps = 7/457 (1%)

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           E L++   +L  G   +++    ++  Y +VG++ SA+K+F+ M  R++ +WN++IAG A
Sbjct: 154 EALRLFDEML--GAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYA 211

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q   ++ A++LFK M       P+EVT++  ++ACGHLGA + G+ +  ++ E ++ +++
Sbjct: 212 QNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSI 271

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
              NA+I MY++CG ++ A  VF  +  R  +V++NT++  FA HG G  A+ L   M  
Sbjct: 272 SGHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAHGHGVEAINLMSTMKE 330

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            G++PD V+++  L AC+HAGL+++G ++F S+ +    P + HY  +VDLLGR G L++
Sbjct: 331 GGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD----PAIDHYACMVDLLGRVGELED 386

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A   ++ + M     ++ +LL A +++  VE+ E+A+ KL E+  +N G+F+LLSN+YA+
Sbjct: 387 AKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYAS 446

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
             RW DV R+R+AMK   VKK  G+S++E GG +HKF  +D+SH +  +IY+ L E+  K
Sbjct: 447 AGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKK 506

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           ++E GY A  SCVL D+ EEEKE  +  HSEKLA+ + L+ +     I+V KNLR+C DC
Sbjct: 507 MREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDC 566

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H  IK+ISK+  R IIVRD  RFH F DG CSCKDYW
Sbjct: 567 HTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 156/361 (43%), Gaps = 91/361 (25%)

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           +LR  +H       VL Y QM     R DA      +K+          +  H+HVL+ G
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGT-----GGIGFHAHVLKLG 55

Query: 139 FLADALLGTTLLDV---------------------------------------------Y 153
             +DA +   ++D+                                             Y
Sbjct: 56  HGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGY 115

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           AKV ++ +A++ FD M  R + SWNA+++G AQ  LA EA+ LF  M             
Sbjct: 116 AKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM------------- 162

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
                    LGA++                N V  NA+I  Y + G LD A ++F+ +  
Sbjct: 163 ---------LGAYR----------------NSVTWNAMISAYMRVGDLDSARKLFNTMPG 197

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDDVSYLAALCACNHAGLVDDGV 332
           R ++VTWN+M+  +A +G    A+ELF++M  A  + PD+V+ ++ + AC H G ++ G 
Sbjct: 198 R-NVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGN 256

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            +   +    +K ++  + +++ +  R G +++A  + + ++   D+V + TL+     +
Sbjct: 257 WVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMAT-RDVVSYNTLISGFAAH 315

Query: 393 G 393
           G
Sbjct: 316 G 316


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/580 (35%), Positives = 326/580 (56%), Gaps = 10/580 (1%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
            ++LQ C ++G++     +QL   L  +G     +    +K+++ YA     ++ +A  L
Sbjct: 66  TSILQSCVASGSLRAG--RQLHGRLLVSGLGPDTVL--STKLVDLYAAC--GQVGHARRL 119

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F  +   +   +N ++R  A       AV  YR M+      D  T    LKACA +L L
Sbjct: 120 FDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDL 179

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               ++H  V    +  D  +   ++D+YAK G +  A+ VFD + VRD   WN++IA  
Sbjct: 180 ETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAY 239

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
            Q     EA+ L + M   G+  P   T++ A++A     A   G ++H +       + 
Sbjct: 240 GQNGRPMEALALCRDMAANGI-GPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQ 298

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM- 303
             +  +++DMYAK G +  A  +F+ +  ++ LV+WN M+  + +HG    AL LF +M 
Sbjct: 299 DKLKTSLVDMYAKSGWVQVARVLFEQLM-KRELVSWNAMICGYGMHGHADEALALFNKMK 357

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGR 362
           G A V PD+++++  L ACNH G+V++    F  M N   +KP ++HY  V+D+LG  GR
Sbjct: 358 GDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGR 417

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
            +EA D++K +S+  D  +W  LL  C+++ +VE+ E+A +KL+E+   + G++V LSN+
Sbjct: 418 FEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNI 477

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YA   +W+   RVRK M NR +KK+   S+IE+ G  H F   D SH +  EIY +L+ +
Sbjct: 478 YAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERL 537

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
              + + GY      V H++ ++EK N +  HSE+LA+AFGLIST   T + V KNLR+C
Sbjct: 538 EGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNLRVC 597

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH VIKLIS++  REII+RD  R+H F +G CSCKDYW
Sbjct: 598 EDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/551 (37%), Positives = 321/551 (58%), Gaps = 6/551 (1%)

Query: 33  GQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNA 92
           G +   LF V   ++E YA S   E+  A  LF ++       ++ ++   A S +   A
Sbjct: 266 GCYDHDLF-VGIALLELYAKS--GEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEA 322

Query: 93  VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV 152
           +  + +M + S   +  T +  L+ACA  ++L    QIHS VL+ G  ++  +   ++DV
Sbjct: 323 LDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDV 382

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           YAK GEI ++ K+F+E+  R+  +WN +I G  Q      A++LF  M +E   +P EVT
Sbjct: 383 YAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHM-LEHDMQPTEVT 441

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
               L A   L A + G +IH    +   + + VV N++IDMYAKCG ++ A   FD + 
Sbjct: 442 YSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMN 501

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
            R   V+WN M+  +++HG    AL LF+ M     KP+ ++++  L AC++AGL+  G 
Sbjct: 502 KRDE-VSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQ 560

Query: 333 RLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             F SM+ +  +KP ++HY  +V LLGR GR  EA  ++  ++    +++W+ LLGAC +
Sbjct: 561 AHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVI 620

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           +  V++  + ++ ++EM  ++    VLLSN+YA   RWD+V  VRK M+ + V+K PG S
Sbjct: 621 HKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLS 680

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
           ++E  GV+H F   D SH   + I   L+ +  K ++ GY    + VL D+ ++EKE  L
Sbjct: 681 WVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHL 740

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
             HSE+LA+A+GLI T  + SI++ KNLRIC DCH V+KLISKV  REI++RD  RFH F
Sbjct: 741 WVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHF 800

Query: 572 KDGACSCKDYW 582
           + G CSC DYW
Sbjct: 801 RHGVCSCGDYW 811



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 158/298 (53%), Gaps = 3/298 (1%)

Query: 96  YRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK 155
           + QM    ++ +  T S ALK+C  + A      +H   L+  +  D  +G  LL++YAK
Sbjct: 225 FNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAK 284

Query: 156 VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG 215
            GEI+ A+++F+EM   D+  W+ +IA  AQ + + EA+DLF RM+   V  PN  T   
Sbjct: 285 SGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVV-PNNFTFAS 343

Query: 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
            L AC    +   G +IH  + +  L+ NV V NA++D+YAKCG ++ + ++F+ +  R 
Sbjct: 344 VLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRN 403

Query: 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335
             VTWNT+++ +   GDG RA+ LF  M    ++P +V+Y + L A      ++ G+++ 
Sbjct: 404 D-VTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIH 462

Query: 336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +         +     S++D+  + GR+ +A      ++   D V W  ++    ++G
Sbjct: 463 SLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMN-KRDEVSWNAMICGYSMHG 519



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 197/393 (50%), Gaps = 10/393 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +LQ+   NGA   I  K L  H+   G     LF  ++ ++ FY  S  N L  A  LF 
Sbjct: 40  MLQQIIRNGA-DPIAGKHLHCHILKRGT-SLDLF-AQNILLNFYVQS--NSLQDASKLFD 94

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           ++   +T  F  + +G +   +   A+ +  ++ +  H  +    +  LK    +     
Sbjct: 95  EMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHL 154

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
              +H+ V + G  ADA +GT L+D Y+  G +  A+ VFD++  +D+ SW  ++A  A+
Sbjct: 155 CWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAE 214

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
                E++ LF +M++ G +KPN  T+ GAL +C  L A+  G  +H    +   D ++ 
Sbjct: 215 NCFYEESLQLFNQMRIMG-YKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLF 273

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V  A++++YAK G +  A  +F+ +  +  L+ W+ M+  +A       AL+LF +M + 
Sbjct: 274 VGIALLELYAKSGEIIDAQRLFEEMP-KTDLIPWSLMIARYAQSDRSKEALDLFLRMRQT 332

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            V P++ ++ + L AC  +  +D G ++ + +   G+  N+    +++D+  + G ++ +
Sbjct: 333 SVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENS 392

Query: 367 CDIVKSVSMGTDMVLWQTLL-GACQLYGDVEMA 398
             + + +    D V W T++ G  QL GD E A
Sbjct: 393 MKLFEELPDRND-VTWNTIIVGYVQL-GDGERA 423


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/520 (37%), Positives = 309/520 (59%), Gaps = 3/520 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++       ++ ++   A S++   AV  + QM R     +  T +  L++CA +  
Sbjct: 199 VFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIEN 258

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L    Q+H HVL+ G   +  +   L+DVYAK G + ++ K+F E+  R+  +WN +I G
Sbjct: 259 LQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVG 318

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q     +A+ L+K M +E   + +EVT    L AC  L A + G +IH    +   D 
Sbjct: 319 YVQSGDGDKALSLYKNM-LECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDK 377

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           +VVV NA+IDMYAKCG +  A  VFD +  R   ++WN M+  +++HG    AL+ F+ M
Sbjct: 378 DVVVGNALIDMYAKCGSIKNARLVFDMLSERDE-ISWNAMISGYSMHGLVGEALKAFQMM 436

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGR 362
                 P+ +++++ L AC++AGL+D G   F SM  + G++P M+HY  +V LLGR+G 
Sbjct: 437 QETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGH 496

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L +A  +++ + +  ++ +W+ LLGAC ++ DV++  +++++++++   +    VLLSN+
Sbjct: 497 LDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNI 556

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YA   RW+ V  VRK MKN+ VKK PG S+IE  G++H F   D SH   + I   L+ +
Sbjct: 557 YARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWL 616

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
             K ++ GY    + VL D+ ++EK+  L  HSE+LA+AFGLI T     I++ KNLRIC
Sbjct: 617 NMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRIC 676

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH  IKLISK+  R+II+RD  RFH F+DG CSC DYW
Sbjct: 677 TDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 161/336 (47%), Gaps = 3/336 (0%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIH 131
           +T  F  +++G   S +    V  + ++ R  H  +    +  LK    V        +H
Sbjct: 5   NTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLH 64

Query: 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
           + + + G  ++A +GT L+D YA  G + SA++ FD +  +D+ SW  ++A  A+ +   
Sbjct: 65  ACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQ 124

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           +++ LF  M+M G F PN  T  G L AC  L A+  G  +H  + +   +M++ V   +
Sbjct: 125 DSLQLFAEMRMVG-FNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGL 183

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           +D+Y K G  +    VF+ +  +  ++ W+ M+  +A       A+ELF QM RA V P+
Sbjct: 184 LDLYTKFGDANDVLRVFEEMP-KHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPN 242

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
             ++ + L +C     +  G ++   +   G+  N+    +++D+  + GRL  +  +  
Sbjct: 243 QFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFM 302

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
            +    + V W T++      GD + A    + ++E
Sbjct: 303 ELP-NRNEVTWNTMIVGYVQSGDGDKALSLYKNMLE 337



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 145/292 (49%), Gaps = 16/292 (5%)

Query: 6   ALLQKCSSNGAVSHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           ++LQ C+S   + ++ + KQ+  H+   G     +F V + +++ YA      L  +  L
Sbjct: 248 SVLQSCAS---IENLQLGKQVHCHVLKVG-LDGNVF-VSNALMDVYA--KCGRLDNSMKL 300

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F ++   +   +N ++ G   S     A+  Y+ ML    ++  +T S  L+ACA + A+
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAM 360

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               QIHS  L+  +  D ++G  L+D+YAK G I +A+ VFD +  RD  SWNA+I+G 
Sbjct: 361 ELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGY 420

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           +   L  EA+  F+ M+ E    PN++T +  L+AC + G    G     Y +    D  
Sbjct: 421 SMHGLVGEALKAFQMMQ-ETECVPNKLTFVSILSACSNAGLLDIG---QNYFKSMVQDYG 476

Query: 245 VVVC----NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           +  C      ++ +  + G LDKA ++ + I    ++  W  ++ A  +H D
Sbjct: 477 IEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHND 528



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 72/158 (45%), Gaps = 10/158 (6%)

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG-VFKPNEVTVLGAL---AACGHLG 224
           M  R+  S+  LI G  Q     E VDLF R+  EG    P   T +  L     C  L 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
                  +H  I +   + N  V  A+ID YA CG ++ A + FD I C K +V+W  MV
Sbjct: 61  Y-----SLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIAC-KDMVSWTGMV 114

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
             +A +     +L+LF +M   G  P+  ++   L AC
Sbjct: 115 ACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKAC 152


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/498 (39%), Positives = 307/498 (61%), Gaps = 19/498 (3%)

Query: 93  VLWYRQMLRGSHRSDALTCSFALKACAR------VLALFETLQIHSHVLRHGFLADALLG 146
           V + R++    H+ + +  +  + AC R         +F+ + + +H   +  LA     
Sbjct: 157 VEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAG---- 212

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
                 Y K GE+ SAK++F EM  RD  SW+ +I G+A     +E+   F+ ++  G+ 
Sbjct: 213 ------YIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGM- 265

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            PNEV++ G L+AC   G+++ G  +H ++ +      V V NA+IDMY++CG +  A  
Sbjct: 266 SPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARL 325

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ ++ ++ +V+W +M+   A+HG G  A+ LF +M   GV PD +S+++ L AC+HAG
Sbjct: 326 VFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAG 385

Query: 327 LVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           L+++G   F+ M     ++P ++HYG +VDL GR+G+LQ+A D +  + +    ++W+TL
Sbjct: 386 LIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTL 445

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGAC  +G++E+AE   ++L E+  NN GD VLLSN YA   +W DV  +RK+M  + +K
Sbjct: 446 LGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIK 505

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLHDIGE 504
           K   +S +EVG  ++KF   +K      E +EKL EI+ ++K E GY    +  L+D+ E
Sbjct: 506 KTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEE 565

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
           EEKE+ +  HSEKLA+AF L   S+  +I++ KNLRICRDCH V+KL SKVY  EI+VRD
Sbjct: 566 EEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRD 625

Query: 565 RVRFHRFKDGACSCKDYW 582
           R RFH FKDG+CSC+DYW
Sbjct: 626 RNRFHSFKDGSCSCRDYW 643



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 174/394 (44%), Gaps = 49/394 (12%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL  C +  A++ IH   ++  + T   F  KL       I   A+S  + L YA  L 
Sbjct: 10  SLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKL-------ILHCAISISDALPYARRLL 62

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACARVLAL 124
                P    FN ++RG + S +P N+V  + +M+R G    D+ + +F +KA     +L
Sbjct: 63  LCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSL 122

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               Q+H   L+HG  +   +GTTL+ +Y   G +  A+KVFDEM   ++ +WNA+I   
Sbjct: 123 RTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITAC 182

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
            +GN  + A ++F +M                                        L  N
Sbjct: 183 FRGNDVAGAREIFDKM----------------------------------------LVRN 202

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
               N ++  Y K G L+ A  +F  +  R   V+W+TM++  A +G    +   F ++ 
Sbjct: 203 HTSWNVMLAGYIKAGELESAKRIFSEMPHRDD-VSWSTMIVGIAHNGSFNESFLYFRELQ 261

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
           RAG+ P++VS    L AC+ +G  + G  L   +   G    +    +++D+  R G + 
Sbjct: 262 RAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVP 321

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            A  + + +     +V W +++    ++G  E A
Sbjct: 322 MARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEA 355


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/523 (36%), Positives = 310/523 (59%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  ++  S   +N ++ G  H+ +   A+  + +M R   +    T S  L ACA 
Sbjct: 110 ARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAA 169

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             A+ E  Q+H+  ++    + + +GT  LDVYAK   I  A  VF+ M  +   +W++L
Sbjct: 170 KYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSL 229

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
            AG  Q  L  E + LF+  + EG+ +  E TV   L+ C  L    EG ++H  I +  
Sbjct: 230 FAGFVQNGLHEEVLCLFQSTQREGM-QLTEFTVSSILSTCASLALIIEGTQVHAVIVKHG 288

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              N+ V  +++D+YAKCG ++K++EVF +++  K++V WN M+ +F+ H     A+ LF
Sbjct: 289 FHRNLFVATSLVDVYAKCGQIEKSYEVFADME-EKNVVLWNAMIASFSRHAHSWEAMILF 347

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGR 359
           E+M + G+ P++V+YL+ L AC+H GLV++G   FN + ++   +PN+ HY  +VD+LGR
Sbjct: 348 EKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGR 407

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           +G+  EA  ++  +       +W +LLG+ +++ ++ +A IA+ +L  +   N G+ VLL
Sbjct: 408 SGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLL 467

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YAA   W++V   RK +++   KK  G S+IE  G IH F   ++ H    ++Y KL
Sbjct: 468 SNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKL 527

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +EI  ++++  + A T C LHD+  ++KE  L +HSEKLA AFGLIS      I ++KNL
Sbjct: 528 EEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNL 587

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RIC DCH  +K++S +  R++IVRD  RFH FKDG+CSC D+W
Sbjct: 588 RICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 147/303 (48%), Gaps = 3/303 (0%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF 166
           D  T    L+ CA+  +L      H   +  G + D +    L+++Y K G+   A++VF
Sbjct: 55  DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVF 114

Query: 167 DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW 226
           D M VR I SWN +IAG        EA+ LF RM  EG  +  E T+   L AC    A 
Sbjct: 115 DAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGT-QMTEFTLSSTLCACAAKYAI 173

Query: 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
            E  ++H    +  LD +  V  A +D+YAKC ++  A  VF+N+   K+ VTW+++   
Sbjct: 174 IECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMP-EKTSVTWSSLFAG 232

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN 346
           F  +G     L LF+   R G++  + +  + L  C    L+ +G ++   +   G   N
Sbjct: 233 FVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRN 292

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
           +    S+VD+  + G+++++ ++   +    ++VLW  ++ +   +     A I   K+ 
Sbjct: 293 LFVATSLVDVYAKCGQIEKSYEVFADME-EKNVVLWNAMIASFSRHAHSWEAMILFEKMQ 351

Query: 407 EMG 409
           ++G
Sbjct: 352 QVG 354


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/524 (37%), Positives = 317/524 (60%), Gaps = 5/524 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACA 119
           A  +F  ++  S   +N ++ G  HS +   A+  + +M R G+H S+  T S  + ACA
Sbjct: 111 ARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSE-FTLSSTICACA 169

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
              A+ E  Q+H+  L+    +++ +GT +LDVYAK   I  A  VF++M  R + +W++
Sbjct: 170 AKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSS 229

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           L AG  Q  L  EA+ LF+  + EGV +  E T+   L+AC  L    EG ++H  I + 
Sbjct: 230 LFAGYVQNGLHEEALHLFRCAQREGV-ELTEFTLSAILSACASLALKIEGIQLHAVILKC 288

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
               N  V  +++D+YA+CG ++KA+ +F  ++  K++V WN M+ +F+ H     A+ L
Sbjct: 289 GFHGNFFVAASLVDVYARCGQIEKAYALFAYME-HKNVVIWNAMIASFSRHAHSWEAMIL 347

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS-MANCGVKPNMKHYGSVVDLLG 358
           FE+M + G+ P++V+YL+ L  C+HAGLV+ G   F+  M++  V+PN+ HY  +VD+LG
Sbjct: 348 FEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLG 407

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           R+G+  EA +++  +       +W +LLG+C+ Y ++ +A IA+ +L ++  +N G+ VL
Sbjct: 408 RSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVL 467

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YAA   W++V   RK +K+   KK  G S+IE  G +H F   ++ H +  +IY K
Sbjct: 468 LSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNK 527

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+EI  +++++       C LHD+  E+KE  L +HSEKLA++FGLIS      I + KN
Sbjct: 528 LEEIYHEMRKFARRTSIECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKN 587

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRIC DCH  +K+ + +  R +IVRD  RFH FKDG+CSC D+W
Sbjct: 588 LRICGDCHSFMKIAAHITERLVIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 165/354 (46%), Gaps = 10/354 (2%)

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-------DALTCSFAL 115
           +++  IN  ST   + +  G+  +++     L +   L+    +       D    S  L
Sbjct: 5   SMYHAINPHSTGSLSVLCSGIYLAARSFCNKLNHSSSLKDRRLARIDRNLIDVSAISQRL 64

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           + CA+  +L      H   +  G + D L    L+++Y K G    A+ VFD M VR I 
Sbjct: 65  QLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIV 124

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           SWN +IAG        +A+ LF RM  EG    +E T+   + AC    A  E  ++H  
Sbjct: 125 SWNTMIAGYTHSGEDVQALKLFSRMHREGT-HMSEFTLSSTICACAAKYAINECKQLHTI 183

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
             +  LD N  V  A++D+YAKC ++  A  VF+ +   ++LVTW+++   +  +G    
Sbjct: 184 ALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMP-ERTLVTWSSLFAGYVQNGLHEE 242

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           AL LF    R GV+  + +  A L AC    L  +G++L   +  CG   N     S+VD
Sbjct: 243 ALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVD 302

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           +  R G++++A  +   +    ++V+W  ++ +   +     A I   K+ ++G
Sbjct: 303 VYARCGQIEKAYALFAYME-HKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLG 355


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/563 (37%), Positives = 322/563 (57%), Gaps = 13/563 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINA-PSTNDFNAVLR 81
           KQL   +   G      F +  K     A S  +E+  A  LF  ++   +   + A++ 
Sbjct: 314 KQLHCQVIKNGSD----FDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIIS 369

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
           G   + +   A+  + QM R   R +  T S  L A A V       QIH+ V++  +  
Sbjct: 370 GYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAV----SPSQIHALVVKTNYEN 425

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
              +GT L D Y+K+G+   A K+F+ +  +DI +W+A+++G AQ      AV +F ++ 
Sbjct: 426 SPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLA 485

Query: 202 MEGVFKPNEVTVLGALAACG-HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
            EGV +PNE T    L AC     + ++G + H    +      + V +A++ MYAK G 
Sbjct: 486 KEGV-EPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGN 544

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           ++ A EVF   +  + LV+WN+M+  +A HG G ++L++FE+M    ++ D ++++  + 
Sbjct: 545 IESANEVFKR-QVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVIS 603

Query: 321 ACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC HAGLV++G R F+ M  +  + P M+HY  +VDL  RAG L++A D++  +      
Sbjct: 604 ACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGA 663

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
            +W+TLL AC+++ +V++ E+A+ KL+ +   +   +VLLSN+YA    W +  +VRK M
Sbjct: 664 TIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLM 723

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
             + VKK  G+S+IEV      F   D SH +   IY KL+E+  ++K+ GY   T  VL
Sbjct: 724 DMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVL 783

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           HD+ EE KE  L  HSE+LA+AFGLI+T   T IQ+ KNLR+C DCH VIKLISK+  R+
Sbjct: 784 HDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRD 843

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           I+VRD  RFH FK G+CSC DYW
Sbjct: 844 IVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 143/266 (53%), Gaps = 8/266 (3%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           ++  LF +      +  N +L   + + +   A+  +  + R    +D  + S  LK C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            +       Q+H   ++ GF+ D  +GT+L+D+Y K   +   ++VFDEM V+++ SW +
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT---VLGALAACGHLGAWKEGDKIHEYI 236
           L+AG  Q  L  +A+ LF +M++EG+ KPN  T   VLG LAA    GA ++G ++H  +
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGI-KPNPFTFAAVLGGLAAD---GAVEKGVQVHTMV 219

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +  LD  + V N++++MY+K  ++  A  VFD+++ R + V+WN+M+  F  +G    A
Sbjct: 220 IKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNA-VSWNSMIAGFVTNGLDLEA 278

Query: 297 LELFEQMGRAGVKPDDVSYLAALCAC 322
            ELF +M   GVK     +   +  C
Sbjct: 279 FELFYRMRLEGVKLTQTIFATVIKLC 304



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 162/335 (48%), Gaps = 6/335 (1%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++   +   + ++L G   +     A+  + QM     + +  T +  L   A   A
Sbjct: 149 VFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGA 208

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           + + +Q+H+ V++ G  +   +G +++++Y+K   +  AK VFD M  R+  SWN++IAG
Sbjct: 209 VEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAG 268

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
                L  EA +LF RM++EGV K  +      +  C ++       ++H  + +   D 
Sbjct: 269 FVTNGLDLEAFELFYRMRLEGV-KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF 327

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           ++ +  A++  Y+KC  +D AF++F  +   +++V+W  ++  +  +G   RA+ LF QM
Sbjct: 328 DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQM 387

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
            R GV+P+  +Y   L A  +A +    +       N    P++    ++ D   + G  
Sbjct: 388 RREGVRPNHFTYSTILTA--NAAVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDA 443

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            EA  I + +    D+V W  +L      GD+E A
Sbjct: 444 NEAAKIFELID-EKDIVAWSAMLSGYAQMGDIEGA 477


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/435 (42%), Positives = 275/435 (63%), Gaps = 10/435 (2%)

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           + + G + +AK VF++M  RD  +W+A+I    Q     EA+  F+ M   GV +PN  +
Sbjct: 277 FGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGV-RPNYPS 335

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           V+  L  C  L     G ++H  +     DM+V   +A+I MY KCG LDKA  VF   +
Sbjct: 336 VISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFE 395

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K +V WN+M+  +A HG G +AL +F  M  AG+ PD ++Y+ AL AC++ G V +G 
Sbjct: 396 P-KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGR 454

Query: 333 RLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
            +FNSM  N  ++P  +HY  +VDLLGR+G ++EA D++K++ +  D V+W  L+GAC++
Sbjct: 455 EIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRM 514

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           + + E+AE+A++KL+E+   N G +VLLS++Y +  RW+D  ++RK + +R++ K PG S
Sbjct: 515 HRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCS 574

Query: 452 YIEVGGVIHKFFTSD----KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
           +IE    +H F + D      H     I EKLD ++    E GY+A  S VLHDI EE+K
Sbjct: 575 WIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLM---ESGYSADGSFVLHDIDEEQK 631

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
            ++L YHSE+ AVA+GL+   E   I+V KNLR+C DCH  IKLI+K+ +REI++RD  R
Sbjct: 632 SHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANR 691

Query: 568 FHRFKDGACSCKDYW 582
           FH FKDG CSC+DYW
Sbjct: 692 FHHFKDGFCSCRDYW 706



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 2/231 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++       ++A+++    +     A+  +R+ML    R +  +    L  CA 
Sbjct: 286 AKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAA 345

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L    ++H+ +LR  F  D    + L+ +Y K G +  AK+VF     +DI  WN++
Sbjct: 346 LAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSM 405

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR-EE 239
           I G AQ  L  +A+ +F  M++ G+  P+ +T +GAL AC + G  KEG +I   +    
Sbjct: 406 ITGYAQHGLGEQALGIFHDMRLAGM-SPDGITYIGALTACSYTGKVKEGREIFNSMTVNS 464

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +       + ++D+  + GL+++AF++  N+      V W  ++ A  +H
Sbjct: 465 SIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMH 515



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 147/331 (44%), Gaps = 23/331 (6%)

Query: 70  APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA--CARVLALFET 127
            PS   F ++LRG        +A+  ++QM   +H S  +     L A        LF+ 
Sbjct: 109 PPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDE 168

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
           +             D +  T +L  Y + G I  A+ +FDEM  R++ SW A+I+G AQ 
Sbjct: 169 MPDR----------DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQN 218

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
              + A  LF+ M      + NEV+    L      G  ++  ++   + E      V  
Sbjct: 219 GEVNLARKLFEVMP-----ERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEH----PVAA 269

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
           CNA++  + + G++D A  VF+ ++ R    TW+ M+ A+  +     AL  F +M   G
Sbjct: 270 CNAMMVGFGQRGMVDAAKTVFEKMRERDD-GTWSAMIKAYEQNEFLMEALSTFREMLWRG 328

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
           V+P+  S ++ L  C    ++D G  +  +M  C    ++    +++ +  + G L +A 
Sbjct: 329 VRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAK 388

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +  +     D+V+W +++     +G  E A
Sbjct: 389 RVFHTFE-PKDIVMWNSMITGYAQHGLGEQA 418



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 60/245 (24%)

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV-------- 205
           A+ G I  A+  F+ M +R  AS+NAL+AG  +  L   A+ LF+RM    +        
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALIS 87

Query: 206 --------------------FKPNEVTVL---------GALAACGHL------------- 223
                               F P+ V+           G LA    L             
Sbjct: 88  GLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYT 147

Query: 224 ---GAWKEGDKIHEYIR--EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
              G   +  +++E  R  +E  D +VV   A++  Y + G + +A  +FD +  ++++V
Sbjct: 148 VLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP-KRNVV 206

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W  M+  +A +G+   A +LFE M       ++VS+ A L     AG V+D   LFN+M
Sbjct: 207 SWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAM 262

Query: 339 ANCGV 343
               V
Sbjct: 263 PEHPV 267


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/460 (42%), Positives = 285/460 (61%), Gaps = 15/460 (3%)

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R G   D  L   +L       +    + +F ++   +I  WN +I GL   +   +A++
Sbjct: 39  RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH-----EYIREERLDM----NVV 246
            +  M+ EG F PN  T    L AC  L   + G KIH     E+I +  ++M    NV 
Sbjct: 99  FYGLMRSEG-FLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVF 157

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V  +++DMYAKCG ++KA  VFD +   K +V+W  M+  +A++G    A++LF QM R 
Sbjct: 158 VGTSLVDMYAKCGNMEKARSVFDGMP-EKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRE 216

Query: 307 ---GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGR 362
              G+KPD  +++  LC C HAGLVD+G R FNSM     + P+++HYG +VDLLGRAG 
Sbjct: 217 NKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGL 276

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L EA  +++++ M  + ++W  LLGAC+++ D ++AE+A ++L+E+   N G++VLLSN+
Sbjct: 277 LDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNI 336

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           Y+A  +WD+  +VR +M  + ++K PG S+IEV G++H+F   DK H    +IY KLDE+
Sbjct: 337 YSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDEL 396

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
             K+K  GY   T  VL DI EEEKE+ L  HSEKLA+AFGLIS +    I+V KNLR+C
Sbjct: 397 TKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVC 456

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH  IKLIS +  REI VRD  RFH F++G+CSC DYW
Sbjct: 457 GDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 496



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 12/245 (4%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           Y   LF QI  P+   +N ++RGL  +    +A+ +Y  M       +  T  F LKACA
Sbjct: 64  YTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACA 123

Query: 120 RVLALFETLQIHSHVLRH---------GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
           R+L L   ++IH+ V++          G + +  +GT+L+D+YAK G +  A+ VFD M 
Sbjct: 124 RLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMP 183

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF--KPNEVTVLGALAACGHLGAWKE 228
            +DI SW A+I G A   L  EA+DLF +M+ E     KP+  T +G L  C H G   E
Sbjct: 184 EKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDE 243

Query: 229 GDK-IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
           G +  +   R   L  ++     ++D+  + GLLD+A ++  N+    + + W  ++ A 
Sbjct: 244 GRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGAC 303

Query: 288 AVHGD 292
            +H D
Sbjct: 304 RIHRD 308


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/526 (37%), Positives = 305/526 (57%), Gaps = 3/526 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           +A A ALF  I    +  +  ++ GL  +   + A+  +R+M       D  T    L A
Sbjct: 227 VAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTA 286

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C  + AL E  QIH+++ R  +  +  +G+ L+D+Y+K   +  A+ VF  M  ++I SW
Sbjct: 287 CGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISW 346

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            A+I G  Q     EAV +F  M+ +G+ KP++ T+   +++C +L + +EG + H    
Sbjct: 347 TAMIVGYGQNGCGEEAVRVFSEMQRDGI-KPDDFTLGSVISSCANLASLEEGAQFHCLAL 405

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
              L   V V NA++ +Y KCG ++ A  +FD +      V+W  +VM +A  G     +
Sbjct: 406 VSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ-VSWTALVMGYAQFGKAKETI 464

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDL 356
           +LFE+M   GVKPD V+++  L AC+ +GLVD G   F+SM  +  + P   HY  ++DL
Sbjct: 465 DLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDL 524

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
             R+G L++A + +K +    D   W TLL AC+L GD+E+ + A+  L+++   N   +
Sbjct: 525 YSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASY 584

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLL +++A+   W+DV ++R+ M++R VKK PG S+I+    +H F   D+SH   R IY
Sbjct: 585 VLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIY 644

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
           EKL  +  K+ E GY    S VLHD+ + EK + L +HSEKLA+AFGLI       I++ 
Sbjct: 645 EKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIV 704

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+C DCH+  K ISK+  R+I+VRD VRFH+F +G CSC D+W
Sbjct: 705 KNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 178/363 (49%), Gaps = 36/363 (9%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKACARV 121
           LF  +       +NA+L G + +     A   Y  +LR     R   +T S  +   + +
Sbjct: 99  LFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASAL 158

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM------------ 169
                  Q+H  +LR GF A A  G+ L+D+YAKVG I  A++VFDEM            
Sbjct: 159 GDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMI 218

Query: 170 -GV------------------RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE 210
            G+                  RD  +W  ++ GL Q  L SEA+D+F+RM+ EGV   ++
Sbjct: 219 TGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGV-GIDQ 277

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
            T    L ACG L A +EG +IH YI     + NV V +A++DMY+KC  +  A  VF  
Sbjct: 278 YTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRR 337

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
           +   K++++W  M++ +  +G G  A+ +F +M R G+KPDD +  + + +C +   +++
Sbjct: 338 MMW-KNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEE 396

Query: 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
           G +        G++P +    ++V L G+ G +++A  +   +S   D V W  L+    
Sbjct: 397 GAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVMGYA 455

Query: 391 LYG 393
            +G
Sbjct: 456 QFG 458



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 140/294 (47%), Gaps = 14/294 (4%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
              ++L  C +  A+     KQ+ A++T T  ++  +F V S +++ Y  S    +  A 
Sbjct: 279 TFGSILTACGALAALEEG--KQIHAYITRTC-YEDNVF-VGSALVDMY--SKCRSVRLAE 332

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           A+FR++   +   + A++ G   +     AV  + +M R   + D  T    + +CA + 
Sbjct: 333 AVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLA 392

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           +L E  Q H   L  G      +   L+ +Y K G I  A ++FDEM   D  SW AL+ 
Sbjct: 393 SLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVM 452

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G AQ   A E +DLF++M  +GV KP+ VT +G L+AC   G     DK   Y    + D
Sbjct: 453 GYAQFGKAKETIDLFEKMLSKGV-KPDGVTFIGVLSACSRSGLV---DKGRSYFHSMQQD 508

Query: 243 MNVVVCN----AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            ++V  +     +ID+Y++ G L +A E    +        W T++ A  + GD
Sbjct: 509 HDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGD 562



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 145/362 (40%), Gaps = 75/362 (20%)

Query: 127 TLQIHSHVLRH-GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
           T  +H+ +LR     +   L  TLL  YA  G +  A++VFD M  R++ + N+L++ LA
Sbjct: 29  TAAVHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALA 88

Query: 186 QGNLASEAVDLFKRMKM--------------------------------EGVFKPNEVTV 213
           +  L  +   LF  +                                  E   +P+ +T+
Sbjct: 89  RAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITM 148

Query: 214 LGALAACGHLGAWKEGDKIH-----------EYIREERLDM------------------- 243
            G +     LG    G ++H            +     +DM                   
Sbjct: 149 SGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEG 208

Query: 244 -NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            NVV+CN +I    +C ++ +A  +F+ I+ R S +TW TMV     +G    AL++F +
Sbjct: 209 KNVVMCNTMITGLLRCKMVAEARALFEAIEERDS-ITWTTMVTGLTQNGLESEALDVFRR 267

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG--RA 360
           M   GV  D  ++ + L AC     +++G ++   +     + N+    ++VD+    R+
Sbjct: 268 MRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRS 327

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC--GDFVL 418
            RL EA   V    M  +++ W  ++     YG     E A R   EM  +     DF L
Sbjct: 328 VRLAEA---VFRRMMWKNIISWTAMIVG---YGQNGCGEEAVRVFSEMQRDGIKPDDFTL 381

Query: 419 LS 420
            S
Sbjct: 382 GS 383


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/585 (35%), Positives = 332/585 (56%), Gaps = 17/585 (2%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTT---GQFQSKLFPVRSKIIEFYALSPLNELA 59
            L++ L+ C+  G      +K+L   L ++      +S LF V   +++ Y+   L  L 
Sbjct: 361 TLSSALKACAGMG------LKELGRQLHSSLMKMDMESDLF-VSVGLVDMYSKCDL--LE 411

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
            A   F  +       +NA++ G +   +   A+  + +M +     +  T S  LK+ A
Sbjct: 412 DARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA 471

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            +  +    Q+H   ++ GF +D  +  +L+D Y K   +  A+++F+E  + D+ S+ +
Sbjct: 472 GLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTS 531

Query: 180 LIAGLAQGNLASEAVDLFKRMK-MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           +I   AQ     EA+ LF  M+ ME   KP+       L AC +L A+++G ++H +I +
Sbjct: 532 MITAYAQYGQGEEALKLFLEMQDME--LKPDRFVCSSLLNACANLSAFEQGKQLHVHILK 589

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
               +++   N++++MYAKCG +D A   F  +   + +V+W+ M+   A HG G +AL+
Sbjct: 590 YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT-ERGIVSWSAMIGGLAQHGHGRQALQ 648

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLL 357
           LF QM + GV P+ ++ ++ L ACNHAGLV +    F SM    G KP  +HY  ++DLL
Sbjct: 649 LFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLL 708

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           GRAG++ EA ++V  +    +  +W  LLGA +++ DVE+   A+  L  +     G  V
Sbjct: 709 GRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHV 768

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LL+N+YA+  +W++V  VR+ M++  VKK PG S+IEV   ++ F   D+SH + +EIY 
Sbjct: 769 LLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYA 828

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
           KLDE+   + + GY       LHD+ + EKE  L +HSEKLAVAFGLI+T +   I+V K
Sbjct: 829 KLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKK 888

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLR+C DCH   K I K+ +REIIVRD  RFH FKDG+CSC DYW
Sbjct: 889 NLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 197/398 (49%), Gaps = 24/398 (6%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           Q+ AH+T +G        +R+ +I  Y  S      YA  L  + + P    ++A++ G 
Sbjct: 77  QIHAHITKSGLSDDP--SIRNHLINLY--SKCRNFGYARKLVDESSEPDLVSWSALISGY 132

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
           A +     A++ + +M     + +  T S  LKAC+ V  L    Q+H  V+  GF  D 
Sbjct: 133 AQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDV 192

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            +  TL+ +YAK  E + +K++FDE+  R++ SWNAL +   Q +   EAV LF  M + 
Sbjct: 193 FVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLS 252

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           G+ KPNE ++   + AC  L     G  IH Y+ +   D +    NA++DMYAK G L  
Sbjct: 253 GI-KPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLAD 311

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A  VF+ IK +  +V+WN ++    +H    +ALEL  QM R+G+ P+  +  +AL AC 
Sbjct: 312 AISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACA 370

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG------T 377
             GL + G +L +S+    ++ ++     +VD+  +       CD+++   M        
Sbjct: 371 GMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSK-------CDLLEDARMAFNLLPEK 423

Query: 378 DMVLWQTLL-GACQLYGDVEMAEIASRKLVEMGSNNCG 414
           D++ W  ++ G  Q + D+E   +     VEM     G
Sbjct: 424 DLIAWNAIISGYSQYWEDMEALSL----FVEMHKEGIG 457



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 145/300 (48%), Gaps = 7/300 (2%)

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
           +G+    +++ S  L  C    +L   LQIH+H+ + G   D  +   L+++Y+K     
Sbjct: 49  KGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFG 108

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
            A+K+ DE    D+ SW+ALI+G AQ  L   A+  F  M + GV K NE T    L AC
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGV-KCNEFTFSSVLKAC 167

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
             +   + G ++H  +     + +V V N ++ MYAKC     +  +FD I   +++V+W
Sbjct: 168 SIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP-ERNVVSW 226

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD--GVRLFNSM 338
           N +   +        A+ LF +M  +G+KP++ S  + + AC   GL D   G  +   +
Sbjct: 227 NALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYL 284

Query: 339 ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              G   +     ++VD+  + G L +A  + + +    D+V W  ++  C L+   E A
Sbjct: 285 IKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQ-PDIVSWNAVIAGCVLHEHHEQA 343


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/586 (34%), Positives = 338/586 (57%), Gaps = 16/586 (2%)

Query: 1    MANLNALLQKCSSNGAVS---HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE 57
            +A L   +  C++ G++S    +H + ++A  +    F + L  + SK         LN+
Sbjct: 654  LATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKC------GNLND 707

Query: 58   LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
               A   F ++   +   + +++          +A+  + +M       D  + +  L A
Sbjct: 708  AIQA---FEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHA 764

Query: 118  CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
            CA   +L +   +H+++ ++       +   L+D+YAK G +  A  VF ++ V+DI SW
Sbjct: 765  CACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSW 824

Query: 178  NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            N +I G ++ +L +EA+ LF  M+ E   +P+ +T+   L ACG L A + G  IH  I 
Sbjct: 825  NTMIGGYSKNSLPNEALKLFAEMQKES--RPDGITMACLLPACGSLAALEIGRGIHGCIL 882

Query: 238  EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
                   + V NA+IDMY KCG L  A  +FD I   K L+TW  M+    +HG G  A+
Sbjct: 883  RNGYSSELHVANALIDMYVKCGSLVHARLLFDMIP-EKDLITWTVMISGCGMHGLGNEAI 941

Query: 298  ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
              F++M  AG+KPD++++ + L AC+H+GL+++G   FNSM + C ++P ++HY  +VDL
Sbjct: 942  ATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDL 1001

Query: 357  LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
            L R G L +A ++++++ +  D  +W  LL  C+++ DVE+AE  +  + E+  +N G +
Sbjct: 1002 LARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYY 1061

Query: 417  VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
            VLL+N+YA  E+W++V ++R+ +  R +KK PG S+IEV G    F ++D +H + + I+
Sbjct: 1062 VLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIF 1121

Query: 477  EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
              L+ +  K+K  G++      L + G+ EKE ALC HSEKLA+AFG+++     +I+V 
Sbjct: 1122 SLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVA 1181

Query: 537  KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH++ K +SK   REII+RD  RFH FKDG CSC+D+W
Sbjct: 1182 KNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 173/337 (51%), Gaps = 4/337 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E+  AH LF ++       +N+++ G   +    +A+ ++ QML      D  T   ++ 
Sbjct: 603 EVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVA 662

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA V +L     +H   ++  F  + +   TLLD+Y+K G +  A + F++MG + + S
Sbjct: 663 ACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVS 722

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W +LIA   +  L  +A+ LF  M+ +GV  P+  ++   L AC    +  +G  +H YI
Sbjct: 723 WTSLIAAYVREGLYDDAIRLFYEMESKGV-SPDVYSMTSVLHACACGNSLDKGRDVHNYI 781

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           R+  + + + V NA++DMYAKCG +++A+ VF  I   K +V+WNTM+  ++ +     A
Sbjct: 782 RKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPV-KDIVSWNTMIGGYSKNSLPNEA 840

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           L+LF +M +   +PD ++    L AC     ++ G  +   +   G    +    +++D+
Sbjct: 841 LKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDM 899

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
             + G L  A  ++  +    D++ W  ++  C ++G
Sbjct: 900 YVKCGSLVHA-RLLFDMIPEKDLITWTVMISGCGMHG 935



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 170/334 (50%), Gaps = 6/334 (1%)

Query: 92  AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD 151
           ++  +++M +     ++ T S  LK  A +  + E  +IH  V + GF +   +  +L+ 
Sbjct: 537 SIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIA 596

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
            Y K GE+ SA K+FDE+G RD+ SWN++I+G      +  A++ F +M +  V   +  
Sbjct: 597 TYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRV-GVDLA 655

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T++ ++AAC ++G+   G  +H    +      V+  N ++DMY+KCG L+ A + F+ +
Sbjct: 656 TLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKM 715

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
             +K++V+W +++ A+   G    A+ LF +M   GV PD  S  + L AC     +D G
Sbjct: 716 G-QKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKG 774

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             + N +    +   +    +++D+  + G ++EA  +   + +  D+V W T++G    
Sbjct: 775 RDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPV-KDIVSWNTMIGG--- 830

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           Y    +   A +   EM   +  D + ++ L  A
Sbjct: 831 YSKNSLPNEALKLFAEMQKESRPDGITMACLLPA 864



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 135/294 (45%), Gaps = 6/294 (2%)

Query: 98  QMLRGSHRS--DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK 155
           ++LR S +S  D    S  L+ CA    L E   +HS +  +G   + +LG  L+ +Y  
Sbjct: 439 ELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVS 498

Query: 156 VGEIVSAKKVFDE-MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
            G +   +++FD  +    +  WN +++  A+     E++ LFK+M+  G+   N  T  
Sbjct: 499 CGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGI-TGNSYTFS 557

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L     LG   E  +IH  + +        V N++I  Y K G +D A ++FD +  R
Sbjct: 558 CILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDR 617

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
             +V+WN+M+    ++G    ALE F QM    V  D  + + ++ AC + G +  G  L
Sbjct: 618 -DVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRAL 676

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
                       +    +++D+  + G L +A    + +   T +V W +L+ A
Sbjct: 677 HGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKT-VVSWTSLIAA 729



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 12/205 (5%)

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           AV+L  RM  +     N  + +  L  C      +EG  +H  I    + +  V+   ++
Sbjct: 437 AVELL-RMSQKSELDLNAYSSI--LQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLV 493

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
            MY  CG L +   +FD+I     +  WN M+  +A  GD   ++ LF++M + G+  + 
Sbjct: 494 FMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNS 553

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL----GRAGRLQEACD 368
            ++   L      G V +  R+      C  K     Y +VV+ L     ++G +  A  
Sbjct: 554 YTFSCILKCFATLGRVGECKRIH----GCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHK 609

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYG 393
           +   +    D+V W +++  C + G
Sbjct: 610 LFDELG-DRDVVSWNSMISGCVMNG 633


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/560 (35%), Positives = 322/560 (57%), Gaps = 6/560 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           + + AHL  + QF   +F + + +I  Y       +A A  +F  + A     + +++ G
Sbjct: 84  RAIHAHLAGS-QFAGSVF-LDNSLIHLYC--KCGAVADARRVFDGMPARDMCSWTSLIAG 139

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A +  P  A+     MLRG  + +  T +  LKA     +     QIH+  +++ +  D
Sbjct: 140 YAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDD 199

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G+ LLD+YA+ G +  A  VFD++  ++  SWNALIAG A+       + +F  M+ 
Sbjct: 200 VYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQR 259

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            G F+    T     +A   +GA ++G  +H ++ +    ++  V N ++DMYAK G + 
Sbjct: 260 NG-FEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMI 318

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A +VFD +  +K +VTWN+M+ AFA +G G  A+  FE+M + GV  + +++L+ L AC
Sbjct: 319 DARKVFDRVD-KKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTAC 377

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           +H GLV +G + F+ M    ++P + HY +VVDLLGRAG L +A   +  + M     +W
Sbjct: 378 SHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVW 437

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
             LLG+C+++ + ++ + A+  + E+  ++ G  VLL N+YA+  +WD   RVRK MK  
Sbjct: 438 GALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKAT 497

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            VKK P  S++E+   +H F  +D +H +  EIY+K +EI  +I++ GY   T  VL  +
Sbjct: 498 GVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHV 557

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            E+E++  L YHSEK+A+AF LI+     +I++ KN+RIC DCH   + ISKV+ REI+V
Sbjct: 558 DEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVV 617

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFH F  G+CSC DYW
Sbjct: 618 RDTNRFHHFSSGSCSCGDYW 637



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 145/279 (51%), Gaps = 3/279 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           + ACAR  +L +   IH+H+    F     L  +L+ +Y K G +  A++VFD M  RD+
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW +LIAG AQ ++  EA+ L   M + G FKPN  T    L A G   +   G++IH 
Sbjct: 131 CSWTSLIAGYAQNDMPDEALGLLPGM-LRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +     +V V +A++DMYA+CG +D A  VFD ++  K+ V+WN ++  FA  GDG 
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLES-KNGVSWNALIAGFARKGDGE 248

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
             L +F +M R G +    +Y +   A    G ++ G  +   M   G + +     +++
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           D+  ++G + +A  +   V    D+V W ++L A   YG
Sbjct: 309 DMYAKSGSMIDARKVFDRVDK-KDVVTWNSMLTAFAQYG 346


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/449 (40%), Positives = 285/449 (63%), Gaps = 6/449 (1%)

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           G   D +   T++  Y K G++ +A++VF  M  R++ SW+A++    +     EA+ +F
Sbjct: 140 GAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVF 199

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM---NVVVCNAVIDM 254
            RM M   F+P+ V ++  L AC HLGA + G  +H Y+          N+++  A++DM
Sbjct: 200 DRM-MREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDM 258

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
           Y KCG ++ A++VFD +  R+ +V WN M+   A++G G RALELF +M + G  P++ +
Sbjct: 259 YCKCGCMEDAWQVFDGVH-RRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNEST 317

Query: 315 YLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           ++A LCAC H G VD+G R+F SM + G+KP  +HYG + DLLGRAG ++EA  ++  + 
Sbjct: 318 FIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMP 377

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           M      W  L+ +CQ++ D+ + E   ++L+E+   + G +V+L NLYA   RW++   
Sbjct: 378 MEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEART 437

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R+ M++R  KK  G S+IE+ G++H+F + D  H   R+IY  L++I  +++  GY   
Sbjct: 438 IRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYALLEDIERRLQLIGYVKD 497

Query: 495 TSCVLHDIGEEEKEN-ALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLIS 553
           TS V+ D+ +EE +  AL YHSE+LA+AFG+++  +   I++ KNLR+CRDCH   KL+S
Sbjct: 498 TSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIVKNLRVCRDCHVHSKLVS 557

Query: 554 KVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K+Y REIIVRDR RFH F+DG CSC DYW
Sbjct: 558 KLYEREIIVRDRHRFHVFRDGVCSCNDYW 586



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 121/254 (47%), Gaps = 11/254 (4%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
            +L  A  +F ++   +   ++A++     + +   A+  + +M+R   R D +     L
Sbjct: 159 GDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVL 218

Query: 116 KACARVLALFETLQIHSHVLRHGF---LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           KACA + A+     +H ++    F     + +L T L+D+Y K G +  A +VFD +  R
Sbjct: 219 KACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRR 278

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D+  WNA+I GLA       A++LF+RM  +G F PNE T +  L AC H G   EG ++
Sbjct: 279 DVVLWNAMIGGLAMNGYGERALELFRRMLQKG-FMPNESTFIAVLCACTHTGRVDEGKRV 337

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            + +++  +         + D+  + G +++A  +  ++        W  ++ +  +H D
Sbjct: 338 FKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHND 397

Query: 293 -------GPRALEL 299
                  G R +EL
Sbjct: 398 INVGERVGKRLIEL 411



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 36/236 (15%)

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG- 304
           VV N+++ +Y   GLLD+A  V  +      +V+WNTMV  +   GD   A E+F +M  
Sbjct: 114 VVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPE 173

Query: 305 --------------RAG----------------VKPDDVSYLAALCACNHAGLVDDGV-- 332
                         RAG                 +PD V  ++ L AC H G V+ G   
Sbjct: 174 RNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWV 233

Query: 333 -RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
            R   + +  G + N+    ++VD+  + G +++A  +   V    D+VLW  ++G   +
Sbjct: 234 HRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHR-RDVVLWNAMIGGLAM 292

Query: 392 YGDVEMAEIASRKLVEMG-SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK 446
            G  E A    R++++ G   N   F+ +        R D+  RV K+M++  +K 
Sbjct: 293 NGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKP 348


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/531 (36%), Positives = 316/531 (59%), Gaps = 13/531 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKACA 119
           A  LF++I   + + +N ++ G +   +   AV L+ R  L G     A   +  L+A A
Sbjct: 377 ARHLFKRIPCNAVS-WNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNL-LEAVA 434

Query: 120 ----RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD-- 173
                  A+ E  ++HS ++  G+ ++  +GT ++ +YA  G I  A   F    + D  
Sbjct: 435 SNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRH 494

Query: 174 -IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
            + SWNA+I+ L+Q      A+  F+RM + GV  PN++T +  L AC    A  EG+ +
Sbjct: 495 DVVSWNAIISSLSQHGHGKRALGFFRRMDLHGV-APNQITCVAVLDACAGAAALTEGEIV 553

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H+++R   ++ N+ V  A+  MY +CG L+ A E+F+ +   + +V +N M+ A++ +G 
Sbjct: 554 HDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGL 613

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYG 351
              AL+LF +M + G +PD+ S+++ L AC+H GL D+G  +F SM    G+ P+  HY 
Sbjct: 614 AGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYA 673

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
             VD+LGRAG L +A ++++ + +   +++W+TLLGAC+ Y DV+   +A+  + E+   
Sbjct: 674 CAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPG 733

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           +   +V+LSN+ A   +WD+   VR  M++R ++K  G S+IE+   +H+F   D+SH +
Sbjct: 734 DESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPR 793

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
             EIY +L+ +  +I+E GY   T  VL  + E EKE  LC HSE+LA+A G++S+S  T
Sbjct: 794 SEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTDT 853

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            ++V KNLR+C DCH+  K ISK+ N+EI+VRD  RFH F DG+CSC DYW
Sbjct: 854 -VRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 166/339 (48%), Gaps = 19/339 (5%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++       +  ++       +   A+  + +M +   R DA+T    LKACAR+  
Sbjct: 84  VFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGD 143

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L +   IH+ ++  G    ++L   LL +Y   G + SA  +F++M  RD+ SWNA IA 
Sbjct: 144 LSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAA 202

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            AQ      A++LF+RM++EGV +P  +T++ AL  C  +   ++   IH  +RE  L+ 
Sbjct: 203 NAQSGDLGIALELFQRMQLEGV-RPARITLVIALTVCATI---RQAQAIHFIVRESGLEQ 258

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            +VV  A+   YA+ G L +A EVFD     + +V+WN M+ A+A HG    A  LF +M
Sbjct: 259 TLVVSTALASAYARLGHLYQAKEVFDR-AAERDVVSWNAMLGAYAQHGHMSEAALLFARM 317

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKH----YGSVVDLLGR 359
              G+ P  V+ + A   C+        +R    +  C ++  +        +++D+  R
Sbjct: 318 LHEGISPSKVTLVNASTGCS-------SLRFGRMIHGCALEKGLDRDIVLGNALLDMYTR 370

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            G  +EA  + K +    + V W T++      G ++ A
Sbjct: 371 CGSPEEARHLFKRIP--CNAVSWNTMIAGSSQKGQMKRA 407



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/324 (30%), Positives = 159/324 (49%), Gaps = 15/324 (4%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA +   A S     A+  +++M     R   +T   AL  CA    + +   IH  V 
Sbjct: 196 WNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCA---TIRQAQAIHFIVR 252

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             G     ++ T L   YA++G +  AK+VFD    RD+ SWNA++   AQ    SEA  
Sbjct: 253 ESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAAL 312

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF RM  EG+  P++VT++ A   C  L   + G  IH    E+ LD ++V+ NA++DMY
Sbjct: 313 LFARMLHEGI-SPSKVTLVNASTGCSSL---RFGRMIHGCALEKGLDRDIVLGNALLDMY 368

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            +CG  ++A  +F  I C  + V+WNTM+   +  G   RA+ELF++M   G+ P   +Y
Sbjct: 369 TRCGSPEEARHLFKRIPC--NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATY 426

Query: 316 LAALCAC----NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
           L  L A       A  + +G +L + + +CG         +VV +    G + EA    +
Sbjct: 427 LNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQ 486

Query: 372 SVSMGT--DMVLWQTLLGACQLYG 393
             +M    D+V W  ++ +   +G
Sbjct: 487 RGAMEDRHDVVSWNAIISSLSQHG 510



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 139/286 (48%), Gaps = 9/286 (3%)

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L +  +IH+ ++  G   +  LG  LL +Y K   +   ++VF  + VRD ASW  +I  
Sbjct: 45  LSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             +   A  A+ +F RM+ EGV + + VT L  L AC  LG   +G  IH +I E  L  
Sbjct: 103 YTEHGQAKRAIGMFHRMQQEGV-RCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKG 161

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
             V+ N ++ +Y  CG +  A  +F+  K  + LV+WN  + A A  GD   ALELF++M
Sbjct: 162 KSVLANLLLHIYGSCGCVASAMLLFE--KMERDLVSWNAAIAANAQSGDLGIALELFQRM 219

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
              GV+P  ++ + AL  C     +     +   +   G++  +    ++     R G L
Sbjct: 220 QLEGVRPARITLVIALTVC---ATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHL 276

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            +A ++    +   D+V W  +LGA   +G +  A +   +++  G
Sbjct: 277 YQAKEVFDRAAE-RDVVSWNAMLGAYAQHGHMSEAALLFARMLHEG 321


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/520 (36%), Positives = 304/520 (58%), Gaps = 3/520 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF  +    +  +  ++ GL  +     A+  +R M +     D  T    L AC  + A
Sbjct: 226 LFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRA 285

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L E  +IH+ ++R G+  +  +G+ L+D+Y K   +  A+ VF  M  +++ SW A++ G
Sbjct: 286 LKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVG 345

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q   + EAV +F  M+  G+ +P++ T+   +++C +L + +EG + H       L  
Sbjct: 346 YGQNGFSEEAVRVFCDMQRNGI-EPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLIS 404

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            + V NA+I +Y KCG ++ + ++FD +  R   V+W  +V  +A  G     ++LFE+M
Sbjct: 405 FITVSNALITLYGKCGSIEDSNQLFDEMSFRDE-VSWTALVSGYAQFGKANETIDLFERM 463

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGR 362
              G+KPD V+++A L AC+ AGLV+ G + F SM  + G+ P   HY  ++DL GRAGR
Sbjct: 464 LVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGR 523

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L+EA + +  +    D + W TLL +C+LYG+ E+ + A+  L+E+   N   ++LLS++
Sbjct: 524 LEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSI 583

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YAA  +W +V ++R+ M+ +  +K PGFS+I+    ++ F   D+S     +IY +L+++
Sbjct: 584 YAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKL 643

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
             K+ E GY    S VLHD+ + EK   L +HSEKLA+AFGL+       I+V KNLR+C
Sbjct: 644 NHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVC 703

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH+  K ISK+  REI+VRD VRFH FKDG CSC D+W
Sbjct: 704 GDCHNATKYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 181/390 (46%), Gaps = 36/390 (9%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDAL 109
           A S   +L+    +F  +       +N+++ G         AV  Y  M++ G    + +
Sbjct: 80  AYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRI 139

Query: 110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE- 168
           T S  L   +    +    QIH  +++ GF A   +G++L+D+YAK+G +  A +VFDE 
Sbjct: 140 TFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEV 199

Query: 169 ------------------------------MGVRDIASWNALIAGLAQGNLASEAVDLFK 198
                                         M  RD  SW  +I GL Q  L +EA+DLF+
Sbjct: 200 QERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFR 259

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            M+ EG+   ++ T    L ACG L A KEG +IH  I     + NV V +A++DMY KC
Sbjct: 260 DMRQEGM-AMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKC 318

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
             +  A  VF  +   K++V+W  M++ +  +G    A+ +F  M R G++PDD +  + 
Sbjct: 319 RSVRYAEAVFKRM-ANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSV 377

Query: 319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
           + +C +   +++G +        G+   +    +++ L G+ G ++++  +   +S   D
Sbjct: 378 ISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSF-RD 436

Query: 379 MVLWQTLLGACQLYGDV-EMAEIASRKLVE 407
            V W  L+     +G   E  ++  R LV+
Sbjct: 437 EVSWTALVSGYAQFGKANETIDLFERMLVQ 466



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 8/237 (3%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           YA A+F+++   +   + A+L G   +     AV  +  M R     D  T    + +CA
Sbjct: 323 YAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCA 382

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            + +L E  Q H   L  G ++   +   L+ +Y K G I  + ++FDEM  RD  SW A
Sbjct: 383 NLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTA 442

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           L++G AQ   A+E +DLF+RM ++G+ KP+ VT +  L+AC   G  + G    +Y    
Sbjct: 443 LVSGYAQFGKANETIDLFERMLVQGL-KPDAVTFIAVLSACSRAGLVERG---QQYFESM 498

Query: 240 RLDMNVVVCN----AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
             D  ++  +     +ID++ + G L++A    + +      + W T++ +  ++G+
Sbjct: 499 LKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGN 555



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 135/320 (42%), Gaps = 36/320 (11%)

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
           HV       ++    T+L  Y+K G++ + +++F  M  RD  SWN+LI+G        E
Sbjct: 61  HVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVE 120

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
           AV  +  M  +GV   N +T    L      G    G +IH  I +      V V ++++
Sbjct: 121 AVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLV 180

Query: 253 DMYAKCGLLDKAFEVFDNIKCR------------------------------KSLVTWNT 282
           DMYAK GL+  A +VFD ++ R                              +  ++W T
Sbjct: 181 DMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTT 240

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           M+     +G    A++LF  M + G+  D  ++ + L AC     + +G  +   +   G
Sbjct: 241 MITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSG 300

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
              N+    ++VD+  +   ++ A  + K ++   ++V W  +L     YG    +E A 
Sbjct: 301 YNHNVFVGSALVDMYCKCRSVRYAEAVFKRMA-NKNVVSWTAMLVG---YGQNGFSEEAV 356

Query: 403 RKLVEMGSNNC--GDFVLLS 420
           R   +M  N     DF L S
Sbjct: 357 RVFCDMQRNGIEPDDFTLGS 376


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/562 (36%), Positives = 322/562 (57%), Gaps = 9/562 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +QL + L      +S LF V   +++ Y+   L  L  A   F  +       +NA++ G
Sbjct: 352 RQLHSSLMKM-DMESDLF-VSVGLVDMYSKCDL--LEDARMAFNLLPEKDLIAWNAIISG 407

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            +   +   A+  + +M +     +  T S  LK+ A +  +    Q+H   ++ GF +D
Sbjct: 408 YSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSD 467

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK- 201
             +  +L+D Y K   +  A+++F+E  + D+ S+ ++I   AQ     EA+ LF  M+ 
Sbjct: 468 IYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQD 527

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           ME   KP+       L AC +L A+++G ++H +I +    +++   N++++MYAKCG +
Sbjct: 528 ME--LKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSI 585

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           D A   F  +   + +V+W+ M+   A HG G +AL+LF QM + GV P+ ++ ++ L A
Sbjct: 586 DDAGRAFSELT-ERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGA 644

Query: 322 CNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           CNHAGLV +    F SM    G KP  +HY  ++DLLGRAG++ EA ++V  +    +  
Sbjct: 645 CNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANAS 704

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +W  LLGA +++ DVE+   A+  L  +     G  VLL+N+YA+  +W++V  VR+ M+
Sbjct: 705 VWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMR 764

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
           +  VKK PG S+IEV   ++ F   D+SH + +EIY KLDE+   + + GY       LH
Sbjct: 765 DSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLH 824

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           D+ + EKE  L +HSEKLAVAFGLI+T +   I+V KNLR+C DCH   K I K+ +REI
Sbjct: 825 DVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREI 884

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           IVRD  RFH FKDG+CSC DYW
Sbjct: 885 IVRDINRFHHFKDGSCSCGDYW 906



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 145/282 (51%), Gaps = 6/282 (2%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           Q+ AH+T +G        +R+ +I  Y  S      YA  L  + + P    ++A++ G 
Sbjct: 77  QIHAHITKSGLSDDP--SIRNHLINLY--SKCRXFGYARKLVDESSEPDLVSWSALISGY 132

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
           A +     A++ + +M     + +  T S  LKAC+ V  L    Q+H  V+  GF  D 
Sbjct: 133 AQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDV 192

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            +  TL+ +YAK  E + +K++FDE+  R++ SWNAL +   Q +   EAV LF  M + 
Sbjct: 193 FVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLS 252

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           G+ KPNE ++   + AC  L     G  IH Y+ +   D +    NA++DMYAK G L  
Sbjct: 253 GI-KPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLAD 311

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           A  VF+ IK +  +V+WN ++    +H    +ALEL  QM R
Sbjct: 312 AISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALELLGQMKR 352



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 145/300 (48%), Gaps = 7/300 (2%)

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
           +G+    +++ S  L  C    +L   LQIH+H+ + G   D  +   L+++Y+K     
Sbjct: 49  KGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFG 108

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
            A+K+ DE    D+ SW+ALI+G AQ  L   A+  F  M + GV K NE T    L AC
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGV-KCNEFTFSSVLKAC 167

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
             +   + G ++H  +     + +V V N ++ MYAKC     +  +FD I   +++V+W
Sbjct: 168 SIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP-ERNVVSW 226

Query: 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD--GVRLFNSM 338
           N +   +        A+ LF +M  +G+KP++ S  + + AC   GL D   G  +   +
Sbjct: 227 NALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYL 284

Query: 339 ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              G   +     ++VD+  + G L +A  + + +    D+V W  ++  C L+   E A
Sbjct: 285 IKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQ-PDIVSWNAVIAGCVLHEHHEQA 343



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 179/397 (45%), Gaps = 38/397 (9%)

Query: 3   NLNALLQKCSSNGAVSHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
             +++L+ CS    V  + I KQ+   +  +G F+  +F V + ++  YA    +E   +
Sbjct: 159 TFSSVLKACS---IVKDLRIGKQVHGVVVVSG-FEGDVF-VANTLVVMYA--KCDEFLDS 211

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             LF +I   +   +NA+            AV  + +M+    + +  + S  + AC  +
Sbjct: 212 KRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGL 271

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
                   IH ++++ G+  D      L+D+YAKVG++  A  VF+++   DI SWNA+I
Sbjct: 272 RDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVI 331

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           AG        +A++L  +MK +                            +H  + +  +
Sbjct: 332 AGCVLHEHHEQALELLGQMKRQ----------------------------LHSSLMKMDM 363

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + ++ V   ++DMY+KC LL+ A   F N+   K L+ WN ++  ++ + +   AL LF 
Sbjct: 364 ESDLFVSVGLVDMYSKCDLLEDARMAF-NLLPEKDLIAWNAIISGYSQYWEDMEALSLFV 422

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           +M + G+  +  +    L +     +V    ++       G   ++    S++D  G+  
Sbjct: 423 EMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCS 482

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +++A  I +  ++G D+V + +++ A   YG  E A
Sbjct: 483 HVEDAERIFEECTIG-DLVSFTSMITAYAQYGQGEEA 518


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/587 (35%), Positives = 328/587 (55%), Gaps = 21/587 (3%)

Query: 2   ANLNALLQKCSSN---GAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNEL 58
           A   ++++ C+S    G V  +H K L++ L+T     + L           AL+   E+
Sbjct: 305 ATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALM---------VALTKCKEI 355

Query: 59  AYAHALFRQINA-PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
             A +LF  ++   S   + A++ G   +     AV  +  M R   + +  T S  L  
Sbjct: 356 DDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV 415

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
              V       +IH+ V++  +   + +GT LLD + K+G I  A KVF+ +  +D+ +W
Sbjct: 416 QHAVF----ISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAW 471

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC-GHLGAWKEGDKIHEYI 236
           +A++AG AQ     EA  +F ++  EG+ KPNE T    + AC     + ++G + H Y 
Sbjct: 472 SAMLAGYAQAGETEEAAKIFHQLTREGI-KPNEFTFCSIINACTAPTASVEQGKQFHAYA 530

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            + RL+  + V ++++ +YAK G ++ A E+F   K R  LV+WN+M+  +A HG   +A
Sbjct: 531 IKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKER-DLVSWNSMISGYAQHGQAKKA 589

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVD 355
           LE+FE+M +  ++ D ++++  + AC HAGLV  G   FN M N   + P M+HY  ++D
Sbjct: 590 LEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMID 649

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           L  RAG L +A DI+  +       +W+ +L A +++ ++E+ ++A+ K++ +   +   
Sbjct: 650 LYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAA 709

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +VLLSN+YAA   W +   VRK M  R VKK PG+S+IEV    + F   D SH     I
Sbjct: 710 YVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHI 769

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
           Y KL E+  ++++ GY   T+ V HDI +E+KE  L +HSE+LA+AFGLI+T     +Q+
Sbjct: 770 YSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQI 829

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLR+C DCH  IKL+S V  R I+VRD  RFH FK G CSC DYW
Sbjct: 830 VKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 184/397 (46%), Gaps = 11/397 (2%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           LN  L+  ++      + I++ Q H       QS +  + ++      L   ++  +A  
Sbjct: 3   LNMTLRALTNTSTNPILRIRRYQLHCHANPLLQSHVVALNAR-----TLLRDSDPRFAQQ 57

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF Q         N +L   +   +   A+  +  + R     D+ T S  L  CA    
Sbjct: 58  LFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFN 117

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
                Q+H   ++ G +    +G +L+D+Y K G +   ++VFDEMG RD+ SWN+L+ G
Sbjct: 118 GTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTG 177

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            +      +  +LF  M++EG ++P+  TV   +AA  + GA   G +IH  + +   + 
Sbjct: 178 YSWNRFNDQVWELFCLMQVEG-YRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFET 236

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
             +VCN++I M +K G+L  A  VFDN++ + S V+WN+M+    ++G    A E F  M
Sbjct: 237 ERLVCNSLISMLSKSGMLRDARVVFDNMENKDS-VSWNSMIAGHVINGQDLEAFETFNNM 295

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDG-VRLFN-SMANCGVKPNMKHYGSVVDLLGRAG 361
             AG KP   ++ + + +C  A L + G VR+ +      G+  N     +++  L +  
Sbjct: 296 QLAGAKPTHATFASVIKSC--ASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCK 353

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            + +A  +   +     +V W  ++      GD + A
Sbjct: 354 EIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQA 390


>gi|125528180|gb|EAY76294.1| hypothetical protein OsI_04228 [Oryza sativa Indica Group]
          Length = 646

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/528 (39%), Positives = 317/528 (60%), Gaps = 20/528 (3%)

Query: 69  NAPST--NDFNAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALKACARVLALF 125
             P+T    FN+++ G A    P      +R+M +    R DA+T    L A   V  L 
Sbjct: 125 TPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVT----LLALVPVAPLG 180

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS--AKKVFDEM--GVRDIASWNALI 181
              Q+H+   R G  A+  +   L+ VYA+ G   +  A++VF+EM    RD+ SWNA+I
Sbjct: 181 IVPQLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAVI 240

Query: 182 AGLAQGNLASEAVDLFKRMKME--GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +  AQ  LA EAV+L++RM+    G  +P+ VT++G L++C H GA + G  + +Y+R+ 
Sbjct: 241 SAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVEQYVRDT 300

Query: 240 RLDM--NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
                 N+ +CNA+I+ +A+CG L +A E+FD +   +S+V+W  +++ + +HG G  A+
Sbjct: 301 IPGFRDNLPLCNALINFHARCGSLAQAQELFDEMP-ERSVVSWTALIIGYGMHGQGDIAV 359

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPNMKHYGSVVD 355
           +LFE M      PD V+ +  L AC+HAG+ D+G + F++M    C ++P ++HY  +VD
Sbjct: 360 DLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYC-LRPKLEHYTCMVD 418

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LLGRAGRL EA +++ S+ M  D  +W  LLGAC+++ +VEM E A  ++V +   N G 
Sbjct: 419 LLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGY 478

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +VL++N+YA   + D V +VR AM+ R ++K PG SY+E  G +H F   D SH + R I
Sbjct: 479 YVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRI 538

Query: 476 YEKLDEIMFKIKE-YGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           YE + E+   +KE  G           + E      + +HSEKLAVAFGL++T   + I 
Sbjct: 539 YELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIV 598

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V KNLR+C DCH  +K IS++ NR  +VRD  RFHRF++GACSC+DYW
Sbjct: 599 VIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRDYW 646


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/498 (39%), Positives = 307/498 (61%), Gaps = 19/498 (3%)

Query: 93  VLWYRQMLRGSHRSDALTCSFALKACAR------VLALFETLQIHSHVLRHGFLADALLG 146
           V + R++    H+ + +  +  + AC R         +F+ + + +H   +  LA     
Sbjct: 149 VEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAG---- 204

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
                 Y K GE+ SAK++F EM  RD  SW+ +I G+A     +E+   F+ ++  G+ 
Sbjct: 205 ------YIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGM- 257

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            PNEV++ G L+AC   G+++ G  +H ++ +      V V NA+IDMY++CG +  A  
Sbjct: 258 SPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARL 317

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF+ ++ ++ +V+W +M+   A+HG G  A+ LF +M   GV PD +S+++ L AC+HAG
Sbjct: 318 VFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAG 377

Query: 327 LVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           L+++G   F+ M     ++P ++HYG +VDL GR+G+LQ+A D +  + +    ++W+TL
Sbjct: 378 LIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTL 437

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGAC  +G++E+AE   ++L E+  NN GD VLLSN YA   +W DV  +RK+M  + +K
Sbjct: 438 LGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIK 497

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLHDIGE 504
           K   +S +EVG  ++KF   +K      E +EKL EI+ ++K E GY    +  L+D+ E
Sbjct: 498 KTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEE 557

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRD 564
           EEKE+ +  HSEKLA+AF L   S+  +I++ KNLRICRDCH V+KL SKVY  EI+VRD
Sbjct: 558 EEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRD 617

Query: 565 RVRFHRFKDGACSCKDYW 582
           R RFH FKDG+CSC+DYW
Sbjct: 618 RNRFHSFKDGSCSCRDYW 635



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 174/394 (44%), Gaps = 49/394 (12%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL  C +  A++ IH   ++  + T   F  KL       I   A+S  + L YA  L 
Sbjct: 2   SLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKL-------ILHCAISISDALPYARRLL 54

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACARVLAL 124
                P    FN ++RG + S +P N+V  + +M+R G    D+ + +F +KA     +L
Sbjct: 55  LCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSL 114

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               Q+H   L+HG  +   +GTTL+ +Y   G +  A+KVFDEM   ++ +WNA+I   
Sbjct: 115 RTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITAC 174

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
            +GN  + A ++F +M                                        L  N
Sbjct: 175 FRGNDVAGAREIFDKM----------------------------------------LVRN 194

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
               N ++  Y K G L+ A  +F  +  R   V+W+TM++  A +G    +   F ++ 
Sbjct: 195 HTSWNVMLAGYIKAGELESAKRIFSEMPHRDD-VSWSTMIVGIAHNGSFNESFLYFRELQ 253

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
           RAG+ P++VS    L AC+ +G  + G  L   +   G    +    +++D+  R G + 
Sbjct: 254 RAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVP 313

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            A  + + +     +V W +++    ++G  E A
Sbjct: 314 MARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEA 347


>gi|218186365|gb|EEC68792.1| hypothetical protein OsI_37341 [Oryza sativa Indica Group]
          Length = 960

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/456 (40%), Positives = 287/456 (62%), Gaps = 12/456 (2%)

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ--------GN 188
           H    D +LG  LL V+A+ G I S ++VFD +   D+ +WNAL++  A+          
Sbjct: 507 HAASCDRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACAT 566

Query: 189 LASEAV-DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
            A++A+ +LF RM +    +PNE+T++  + ACG LGA   G   H Y  + RL +N +V
Sbjct: 567 SAADAILELFVRM-LSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIV 625

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
             A+++MYA CG LD A +VF  +  R +   +N M+   AVHG G  AL L ++M  AG
Sbjct: 626 ATALVEMYAGCGRLDLAEQVFAAVSDRDTRC-YNAMLHGLAVHGHGRAALSLLDRMHGAG 684

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           V  D V+ L+ +CAC HAGLVD+G+  F+ M    G++P ++HYG ++D+L RAG+L  A
Sbjct: 685 VPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGQLNNA 744

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426
             ++  + +  +  ++++L+ AC ++G +E+ E    +L+ +  ++ G+ VL+SN YA  
Sbjct: 745 EKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYART 804

Query: 427 ERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKI 486
            RW+D  + RK MK+  + K PG S +++ GV+H+F   DK+H   +EIY  ++EI  ++
Sbjct: 805 NRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRL 864

Query: 487 KEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCH 546
            E G  + TS  L D+ EE+K + L YHSE+LA+AF LI+++    I++ KNLR+C DCH
Sbjct: 865 IECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCH 924

Query: 547 DVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +  KL+S+VY REI++RDR RFH F+DG CSC D+W
Sbjct: 925 ESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 960



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 130/271 (47%), Gaps = 25/271 (9%)

Query: 58  LAYAHALFRQINAPSTNDFNAVL--------RGLAHSSKPTNAVL-WYRQMLRGSHRSDA 108
           +A    +F +I  P    +NA+L        R +A ++   +A+L  + +ML  +   + 
Sbjct: 529 IASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADAILELFVRMLSLAIEPNE 588

Query: 109 LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE 168
           +T    + AC  + A+   +  H++ ++     + ++ T L+++YA  G +  A++VF  
Sbjct: 589 ITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAA 648

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
           +  RD   +NA++ GLA       A+ L  RM   GV   + VTVL  + AC H G   E
Sbjct: 649 VSDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGV-PVDGVTVLSVMCACAHAGLVDE 707

Query: 229 G----DKIH-EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
           G    D++  E+  E R++        +IDM ++ G L+ A ++   +    +   + ++
Sbjct: 708 GLDYFDRMEIEFGIEPRIEHY----GCMIDMLSRAGQLNNAEKLIHEMLIVPNAAIYRSL 763

Query: 284 VMAFAVHGDGPRALELFEQM--GRAGVKPDD 312
           + A  +HG     LEL E+M      ++PDD
Sbjct: 764 IRACGIHGK----LELGEKMIAELMRLEPDD 790


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/432 (43%), Positives = 278/432 (64%), Gaps = 4/432 (0%)

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           + + GE+  A++VFD+M  +D  +W+A+I    +  L  +A++LF+ M+ EG+ +PN  +
Sbjct: 356 FGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGI-RPNFPS 414

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           ++  L+ C  L     G +IH  +   + D++V V + ++ MY KCG L KA +VFD   
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFA 474

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K +V WN+++  +A HG G  AL +F  M  +G+ PDDV+++  L AC++ G V  G+
Sbjct: 475 V-KDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGL 533

Query: 333 RLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
            +FNSM     V+  ++HY  +VDLLGRAG+L EA D+++ + M  D ++W  LLGAC+ 
Sbjct: 534 EIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRT 593

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           +  +++AE+A++KL+ +   N G F+LLSN+YA+  RWDDV  +R+ M++R V K PG S
Sbjct: 594 HMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCS 653

Query: 452 YIEVGGVIHKFFTSDKS-HVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           +I V   +HKF   D S H +  EI   L+ +   ++E GY    S VLHD+ EEEK  +
Sbjct: 654 WIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQS 713

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           L YHSEKLAVA+GL+       I+V KNLR+C DCH  IKLI+KV  REII+RD  RFH 
Sbjct: 714 LEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHH 773

Query: 571 FKDGACSCKDYW 582
           FKDG+CSC+DYW
Sbjct: 774 FKDGSCSCRDYW 785



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 117/235 (49%), Gaps = 2/235 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E+  A  +F Q+       ++A+++         +A+  +R M R   R +  +    L 
Sbjct: 361 EVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLS 420

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            CA +  L    +IH+ ++R  F  D  + + LL +Y K G +  AK+VFD   V+D+  
Sbjct: 421 VCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVM 480

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN++I G AQ  L  EA+ +F  M   G+  P++VT +G L+AC + G  K+G +I   +
Sbjct: 481 WNSIITGYAQHGLGVEALRVFHDMHFSGIM-PDDVTFVGVLSACSYTGNVKKGLEIFNSM 539

Query: 237 REE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
             + +++  +     ++D+  + G L++A ++ + +      + W  ++ A   H
Sbjct: 540 ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTH 594



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 11/252 (4%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +  T ++  Y +VG +V A+ +FDEM  R++ SW  +I G  Q      A  LF+ M 
Sbjct: 252 DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP 311

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
                + NEV+    L    + G   E  ++   +  +    +VV CNA+I  + + G +
Sbjct: 312 -----EKNEVSWTAMLKGYTNCGRLDEASELFNAMPIK----SVVACNAMILCFGQNGEV 362

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
            KA +VFD ++  K   TW+ M+  +   G    ALELF  M R G++P+  S ++ L  
Sbjct: 363 PKARQVFDQMR-EKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSV 421

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C     +D G  +   +       ++     ++ +  + G L +A  +    ++  D+V+
Sbjct: 422 CAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAV-KDVVM 480

Query: 382 WQTLLGACQLYG 393
           W +++     +G
Sbjct: 481 WNSIITGYAQHG 492



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 147/346 (42%), Gaps = 45/346 (13%)

Query: 37  SKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWY 96
           S     R+ +I  Y  S L ++  A  +F ++   +   +N+++ G   + +P  A    
Sbjct: 95  SNFIISRNSLITRY--SRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEA---- 148

Query: 97  RQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV 156
           + M       + ++ +  +        + E  ++   +     ++     T ++  Y K 
Sbjct: 149 QNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVS----WTAMVRGYVKE 204

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
           G I  A+ +F +M  +++ SW  ++ GL Q     EA  LF  M  + V       ++G 
Sbjct: 205 GMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVV--TRTNMIGG 262

Query: 217 LAACGHL---------------GAWKEGDKIHEYIREERLDM-----------NVVVCNA 250
               G L                +W     I  Y++ +++D+           N V   A
Sbjct: 263 YCQVGRLVEARMLFDEMPRRNVVSWT--TMITGYVQNQQVDIARKLFEVMPEKNEVSWTA 320

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           ++  Y  CG LD+A E+F+ +   KS+V  N M++ F  +G+ P+A ++F+QM     + 
Sbjct: 321 MLKGYTNCGRLDEASELFNAMPI-KSVVACNAMILCFGQNGEVPKARQVFDQMR----EK 375

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           D+ ++ A +      GL  D + LF  M   G++PN     SV+ +
Sbjct: 376 DEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSV 421



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 129/318 (40%), Gaps = 69/318 (21%)

Query: 123 ALFETLQIHSHVLRHGFLADALLG-TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
           ++F  L     VL   + ++ ++   +L+  Y+++G+I  A+ VFDEM  ++I SWN+++
Sbjct: 77  SMFSGLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIV 136

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           AG  Q     EA ++F +M                                         
Sbjct: 137 AGYFQNKRPQEAQNMFDKMS---------------------------------------- 156

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + N +  N ++  Y   G++++A EVFD +  R ++V+W  MV  +   G    A  LF 
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPER-NVVSWTAMVRGYVKEGMISEAETLFW 215

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           QM    V    VS+   L      G +D+  RLF+ M    V       G    +    G
Sbjct: 216 QMPEKNV----VSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQV----G 267

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM------------- 408
           RL EA  +   +    ++V W T++     Y   +  +IA RKL E+             
Sbjct: 268 RLVEARMLFDEMPR-RNVVSWTTMITG---YVQNQQVDIA-RKLFEVMPEKNEVSWTAML 322

Query: 409 -GSNNCGDFVLLSNLYAA 425
            G  NCG     S L+ A
Sbjct: 323 KGYTNCGRLDEASELFNA 340


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/586 (35%), Positives = 332/586 (56%), Gaps = 43/586 (7%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F S L+ + + +I+ Y     N+L  A  +F ++       +N+++ G   +     A+ 
Sbjct: 146 FGSDLY-IGNALIDMYC--RFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALE 202

Query: 95  WYRQMLR------GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
            Y Q ++         + D LT +  L+AC  +  L     +H +++  G+  D      
Sbjct: 203 IYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNI 262

Query: 149 LLDVYAKVGEIVSAK-------------------------------KVFDEMGVRDIASW 177
           L+++YAK G +++++                               KVF+ M  RDI +W
Sbjct: 263 LINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITW 322

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           N +IA        +  + +  RM+ EGV  P+  T+L  L  C  L A ++G +IH  I 
Sbjct: 323 NTIIASCVHSEDCNLGLRMISRMRTEGV-TPDMATMLSILPVCSLLAAKRQGKEIHGCIF 381

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +  L+ +V V N +I+MY+KCG L  +F+VF  +K  K +VTW  ++ A  ++G+G +A+
Sbjct: 382 KLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKT-KDVVTWTALISACGMYGEGKKAV 440

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDL 356
             F +M  AG+ PD V+++A + AC+H+GLV++G+  F+ M  +  ++P ++HY  VVDL
Sbjct: 441 RAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDL 500

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L R+  L +A D + S+ +  D  +W  LL AC++ GD E+AE  S +++E+  ++ G +
Sbjct: 501 LSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYY 560

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VL+SN+YAA  +WD V  +RK++K R +KK PG S++E+   ++ F T  K   ++ E+ 
Sbjct: 561 VLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVN 620

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
           + L  +   + + GY A    VLHDI E+EK + LC HSE+LA+AFGL++T   T +QV 
Sbjct: 621 KLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVM 680

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+C DCH V K ISK+  RE++VRD  RFH FKDGACSC DYW
Sbjct: 681 KNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 208/421 (49%), Gaps = 53/421 (12%)

Query: 16  AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND 75
           A +   + +L + + T G   S +F   +K+I  YA     +   + ++FR + +PS N 
Sbjct: 26  AATTTQLHKLHSLIITLGLHHSVIFS--AKLIAKYA--HFRDPTSSFSVFR-LASPSNNV 80

Query: 76  F--NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH 133
           +  N+++R L H+   + A+  Y +  R   + D  T    + ACA +L       IH  
Sbjct: 81  YLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDR 140

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           VL  GF +D  +G  L+D+Y +  ++  A+KVF+EM +RD+ SWN+LI+G       +EA
Sbjct: 141 VLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 200

Query: 194 VDLFKR-----MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
           ++++ +     M+M   FKP+ +T+   L ACGHLG  + G  +H+Y+     + +    
Sbjct: 201 LEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS 260

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N +I+MYAKCG L  + EVF  +KC+ S V+WN+M+  +  +G    +L++FE M     
Sbjct: 261 NILINMYAKCGNLLASQEVFSGMKCKDS-VSWNSMINVYIQNGKMGDSLKVFENMK---- 315

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV--------------- 353
             D +++   + +C H+   + G+R+ + M   GV P+M    S+               
Sbjct: 316 ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE 375

Query: 354 --------------------VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
                               +++  + G L+ +  + K +    D+V W  L+ AC +YG
Sbjct: 376 IHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKT-KDVVTWTALISACGMYG 434

Query: 394 D 394
           +
Sbjct: 435 E 435



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 133/281 (47%), Gaps = 16/281 (5%)

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD-EMGVRDI 174
           +A A      +  ++HS ++  G     +    L+  YA   +  S+  VF       ++
Sbjct: 21  RALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNV 80

Query: 175 ASWNALIAGLAQGNLASEAVDLF---KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
             WN++I  L    L SEA+ L+   +R++++    P+  T    + AC  L  ++    
Sbjct: 81  YLWNSIIRALTHNGLFSEALSLYSETQRIRLQ----PDTYTFPSVINACAGLLDFEMAKS 136

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           IH+ + +     ++ + NA+IDMY +   LDKA +VF+ +  R  +V+WN+++  +  +G
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISGYNANG 195

Query: 292 DGPRALELFEQMGRAGV------KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
               ALE++ Q  +  +      KPD ++  + L AC H G ++ G  + + M   G + 
Sbjct: 196 YWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 255

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           +      ++++  + G L  + ++   +    D V W +++
Sbjct: 256 DTTASNILINMYAKCGNLLASQEVFSGMKC-KDSVSWNSMI 295


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/435 (42%), Positives = 274/435 (62%), Gaps = 10/435 (2%)

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           + + G + +AK VF++M  RD  +W+A+I    Q     EA+  F+ M   GV +PN  +
Sbjct: 277 FGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGV-RPNYPS 335

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           V+  L  C  L     G ++H  +     DM+V   +A+I MY KCG LDKA  VF   +
Sbjct: 336 VISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFE 395

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K +V WN+M+  +A HG G +AL +F  M  AG+ PD ++Y+ AL AC++ G V +G 
Sbjct: 396 P-KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGR 454

Query: 333 RLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
            +FNSM  N  ++P  +HY  +VDLLGR+G ++EA D++K++ +  D V+W  L+GAC++
Sbjct: 455 EIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRM 514

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           + + E+AE A++KL+E+   N G +VLLS++Y +  RW+D  ++RK + +R++ K PG S
Sbjct: 515 HRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCS 574

Query: 452 YIEVGGVIHKFFTSD----KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
           +IE    +H F + D      H     I EKLD ++    E GY+A  S VLHDI EE+K
Sbjct: 575 WIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLM---ESGYSADGSFVLHDIDEEQK 631

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
            ++L YHSE+ AVA+GL+   E   I+V KNLR+C DCH  IKLI+K+ +REII+RD  R
Sbjct: 632 SHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANR 691

Query: 568 FHRFKDGACSCKDYW 582
           FH FKDG CSC+DYW
Sbjct: 692 FHHFKDGFCSCRDYW 706



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 2/231 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++       ++A+++    +     A+  +R+ML    R +  +    L  CA 
Sbjct: 286 AKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAA 345

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L    ++H+ +LR  F  D    + L+ +Y K G +  AK+VF     +DI  WN++
Sbjct: 346 LAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSM 405

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR-EE 239
           I G AQ  L  +A+ +F  M++ G+  P+ +T +GAL AC + G  KEG +I   +    
Sbjct: 406 ITGYAQHGLGEQALGIFHDMRLAGM-SPDGITYIGALTACSYTGKVKEGREIFNSMTVNS 464

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +       + ++D+  + GL+++AF++  N+      V W  ++ A  +H
Sbjct: 465 SIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMH 515



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 147/331 (44%), Gaps = 23/331 (6%)

Query: 70  APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA--CARVLALFET 127
            PS   F ++LRG        +A+  ++QM   +H S  +     L A        LF+ 
Sbjct: 109 PPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDE 168

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
           +             D +  T +L  Y + G I  A+ +FDEM  R++ SW A+I+G AQ 
Sbjct: 169 MPDR----------DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQN 218

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
              + A  LF+ M      + NEV+    L      G  ++  ++   + E      V  
Sbjct: 219 GEVNLARKLFEVMP-----ERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEH----PVAA 269

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
           CNA++  + + G++D A  VF+ + C +   TW+ M+ A+  +     AL  F +M   G
Sbjct: 270 CNAMMVGFGQRGMVDAAKTVFEKM-CERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRG 328

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
           V+P+  S ++ L  C    ++D G  +  +M  C    ++    +++ +  + G L +A 
Sbjct: 329 VRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAK 388

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +  +     D+V+W +++     +G  E A
Sbjct: 389 RVFHTFE-PKDIVMWNSMITGYAQHGLGEQA 418



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 60/245 (24%)

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV-------- 205
           A+ G I  A+  F+ M +R  AS+NAL+AG  +  L   A+ LF+RM    +        
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALIS 87

Query: 206 --------------------FKPNEVTVL---------GALAACGHL------------- 223
                               F P+ V+           G LA    L             
Sbjct: 88  GLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYT 147

Query: 224 ---GAWKEGDKIHEYIR--EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
              G   +  +++E  R  +E  D +VV   A++  Y + G + +A  +FD +  ++++V
Sbjct: 148 VLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP-KRNVV 206

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W  M+  +A +G+   A +LFE M       ++VS+ A L     AG V+D   LFN+M
Sbjct: 207 SWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAM 262

Query: 339 ANCGV 343
               V
Sbjct: 263 PEHPV 267


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/435 (42%), Positives = 274/435 (62%), Gaps = 10/435 (2%)

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           + + G + +AK VF++M  RD  +W+A+I    Q     EA+  F+ M   GV +PN  +
Sbjct: 277 FGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGV-RPNYPS 335

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           V+  L  C  L     G ++H  +     DM+V   +A+I MY KCG LDKA  VF   +
Sbjct: 336 VISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFE 395

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K +V WN+M+  +A HG G +AL +F  M  AG+ PD ++Y+ AL AC++ G V +G 
Sbjct: 396 P-KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGR 454

Query: 333 RLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
            +FNSM  N  ++P  +HY  +VDLLGR+G ++EA D++K++ +  D V+W  L+GAC++
Sbjct: 455 EIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRM 514

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           + + E+AE A++KL+E+   N G +VLLS++Y +  RW+D  ++RK + +R++ K PG S
Sbjct: 515 HRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCS 574

Query: 452 YIEVGGVIHKFFTSD----KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
           +IE    +H F + D      H     I EKLD ++    E GY+A  S VLHDI EE+K
Sbjct: 575 WIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLM---ESGYSADGSFVLHDIDEEQK 631

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
            ++L YHSE+ AVA+GL+   E   I+V KNLR+C DCH  IKLI+K+ +REII+RD  R
Sbjct: 632 SHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANR 691

Query: 568 FHRFKDGACSCKDYW 582
           FH FKDG CSC+DYW
Sbjct: 692 FHHFKDGFCSCRDYW 706



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 2/231 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++       ++A+++    +     A+  +R+ML    R +  +    L  CA 
Sbjct: 286 AKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAA 345

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L    ++H+ +LR  F  D    + L+ +Y K G +  AK+VF     +DI  WN++
Sbjct: 346 LAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSM 405

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR-EE 239
           I G AQ  L  +A+ +F  M++ G+  P+ +T +GAL AC + G  KEG +I   +    
Sbjct: 406 ITGYAQHGLGEQALGIFHDMRLAGM-SPDGITYIGALTACSYTGKVKEGREIFNSMTVNS 464

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +       + ++D+  + GL+++AF++  N+      V W  ++ A  +H
Sbjct: 465 SIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMH 515



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 147/330 (44%), Gaps = 23/330 (6%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA--CARVLALFETL 128
           PS   F ++LRG        +A+  ++QM   +H S  +     L A        LF+ +
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEM 169

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
                        D +  T +L  Y + G I  A+ +FDEM  R++ SW A+I+G AQ  
Sbjct: 170 PDR----------DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNG 219

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
             + A  LF+ M      + NEV+    L      G  ++  ++   + E      V  C
Sbjct: 220 EVNLARKLFEVMP-----ERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEH----PVAAC 270

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           NA++  + + G++D A  VF+ + C +   TW+ M+ A+  +     AL  F +M   GV
Sbjct: 271 NAMMVGFGQRGMVDAAKTVFEKM-CERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGV 329

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           +P+  S ++ L  C    ++D G  +  +M  C    ++    +++ +  + G L +A  
Sbjct: 330 RPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKR 389

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           +  +     D+V+W +++     +G  E A
Sbjct: 390 VFHTFE-PKDIVMWNSMITGYAQHGLGEQA 418



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 60/240 (25%)

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV-------- 205
           A+ G I  A+  F+ M +R  AS+NAL+AG  +  L   A+ LF+RM    +        
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALIS 87

Query: 206 --------------------FKPNEVTVL---------GALAACGHL------------- 223
                               F P+ V+           G LA    L             
Sbjct: 88  GLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYT 147

Query: 224 ---GAWKEGDKIHEYIR--EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
              G   +  +++E  R  +E  D +VV   A++  Y + G + +A  +FD +  ++++V
Sbjct: 148 VLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP-KRNVV 206

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W  M+  +A +G+   A +LFE M     + ++VS+ A L     AG V+D   LFN+M
Sbjct: 207 SWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/551 (36%), Positives = 329/551 (59%), Gaps = 13/551 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           +QS++F + + +I  Y      EL+    +F ++   +   ++A++       +      
Sbjct: 41  YQSQVF-ISNSLITMYGKCDKYELS--RQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFS 97

Query: 95  WYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153
            +RQML  GS  S        L A A V +  E   ++  V+ +G   D  + +    ++
Sbjct: 98  LFRQMLSEGSRPSRGAI----LNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMF 153

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           A+ G +  A+K+FD +  +D+ +W   I    + ++  EA+ L K+M ++G+F P+ +T+
Sbjct: 154 ARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIF-PDAITL 212

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERL-DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           LG + AC  L +++    +H  I      +  + V  A+ID+Y KCG L  A +VFD ++
Sbjct: 213 LGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQ 272

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             ++++TW+ M+  + +HG G  AL LF+QM +A VKPD +++++ L AC+H+GLV +G 
Sbjct: 273 -ERNIITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGW 330

Query: 333 RLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             FNSMA + GV P  +HY  +VD+LGRAG+L EACD ++ + +  +  +W  LLGAC++
Sbjct: 331 ECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRI 390

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           + +V++AE+ +R L ++  +N G +V+L N+Y    +  +   +R  MKNR VKK+ G+S
Sbjct: 391 HLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYS 450

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
            IE+   ++ F   D+SH +   IY +L+ +M +I++ GY    + VLHD+ EE KE+ L
Sbjct: 451 VIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEETKESML 510

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
             HSEKLA+ FGL++    + I++ KNLR+C DCH   K ISKV  REI+VRD  RFH F
Sbjct: 511 YLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHF 570

Query: 572 KDGACSCKDYW 582
           K+GACSC+DYW
Sbjct: 571 KNGACSCRDYW 581



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           MLR   + D  T  F +KAC+ +      ++IH  V++ G+ +   +  +L+ +Y K  +
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
              +++VFDEM  ++  SW+A+I    Q +   E   LF++M  EG  +P+   +L A+A
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGS-RPSRGAILNAMA 119

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
               + + +E D ++  + E  LD +  V +A   M+A+CG ++ A ++FD I   K LV
Sbjct: 120 C---VRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIM-SKDLV 175

Query: 279 TWNTMVMAFAVHGDGP-RALELFEQMGRAGVKPDDVSYLAALCACN 323
           TW T + A+ V  D P  AL L +QM   G+ PD ++ L  + AC+
Sbjct: 176 TWATTIEAY-VKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACS 220


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/435 (42%), Positives = 275/435 (63%), Gaps = 3/435 (0%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           +L  +A+ G++   +K+FDEM  RD+ SWN ++          EA++ FKRM+  G+  P
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLV-P 59

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           +E T++  L+A   L   + G  IH  I    L M + +  A++DMYAKCG ++++  +F
Sbjct: 60  DEATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLF 119

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
           +N+  R+ + TWN M+   A HG G  AL LFE+    G+ P +V+++  L AC+ AGLV
Sbjct: 120 ENMP-RRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLV 178

Query: 329 DDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
            +G   F  M +  G++P M+HYG +VDLLGRAG + EA  +++S+++  D VLW  +L 
Sbjct: 179 KEGRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLC 238

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           AC+++G  E+ E    +L+E+     G +V L+++YA   +W+DV RVR+ M  R+  KV
Sbjct: 239 ACRIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKV 298

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
            G+S IE  G +H+F    + H +  EI + L+ I  ++   GY    S VLHDIGEEEK
Sbjct: 299 AGWSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEK 358

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           ENA+  HSE+LA+AFGL+ T   + I++ KNLR+C DCH+V K+IS+V+ REIIVRD  R
Sbjct: 359 ENAIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSR 418

Query: 568 FHRFKDGACSCKDYW 582
           FH FK+G CSC DYW
Sbjct: 419 FHHFKEGKCSCLDYW 433



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 6/256 (2%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +++    LF ++       +N +L    H+ K   A+  +++M       D  T    L 
Sbjct: 10  QVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTMLS 69

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           A A++  L     IHS +          +GT LLD+YAK G I  ++ +F+ M  RD+++
Sbjct: 70  ASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVST 129

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN +I GLA   L  +A+ LF+R   EG   P  VT +G L AC   G  KEG    + +
Sbjct: 130 WNVMICGLASHGLGKDALTLFERFLNEG-LHPMNVTFVGVLNACSRAGLVKEGRHYFQMM 188

Query: 237 REER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
            +   ++  +     ++D+  + GL+ +A +V +++      V W  ++ A  +HG    
Sbjct: 189 TDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHG---- 244

Query: 296 ALELFEQMGRAGVKPD 311
             EL E++G   ++ D
Sbjct: 245 LAELGEKIGNRLIELD 260


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/432 (43%), Positives = 278/432 (64%), Gaps = 4/432 (0%)

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           + + GE+  A++VFD+M  +D  +W+A+I    +  L  +A++LF+ M+ EG+ +PN  +
Sbjct: 356 FGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGI-RPNFPS 414

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           ++  L+ C  L     G +IH  +   + D++V V + ++ MY KCG L KA +VFD   
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFA 474

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K +V WN+++  +A HG G  AL +F  M  +G+ PDDV+++  L AC++ G V  G+
Sbjct: 475 V-KDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGL 533

Query: 333 RLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
            +FNSM     V+  ++HY  +VDLLGRAG+L EA D+++ + M  D ++W  LLGAC+ 
Sbjct: 534 EIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRT 593

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           +  +++AE+A++KL+ +   N G F+LLSN+YA+  RWDDV  +R+ M++R V K PG S
Sbjct: 594 HMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCS 653

Query: 452 YIEVGGVIHKFFTSDKS-HVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           +I V   +HKF   D S H +  EI   L+ +   ++E GY    S VLHD+ EEEK  +
Sbjct: 654 WIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQS 713

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           L YHSEKLAVA+GL+       I+V KNLR+C DCH  IKLI+KV  REII+RD  RFH 
Sbjct: 714 LEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHH 773

Query: 571 FKDGACSCKDYW 582
           FKDG+CSC+DYW
Sbjct: 774 FKDGSCSCRDYW 785



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 117/235 (49%), Gaps = 2/235 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E+  A  +F Q+       ++A+++         +A+  +R M R   R +  +    L 
Sbjct: 361 EVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLS 420

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            CA +  L    +IH+ ++R  F  D  + + LL +Y K G +  AK+VFD   V+D+  
Sbjct: 421 VCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVM 480

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN++I G AQ  L  EA+ +F  M   G+  P++VT +G L+AC + G  K+G +I   +
Sbjct: 481 WNSIITGYAQHGLGVEALRVFHDMHFSGIM-PDDVTFVGVLSACSYTGNVKKGLEIFNSM 539

Query: 237 REE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
             + +++  +     ++D+  + G L++A ++ + +      + W  ++ A   H
Sbjct: 540 ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTH 594



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 11/252 (4%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +  T ++  Y +VG +V A+ +FDEM  R++ SW  +I G  Q      A  LF+ M 
Sbjct: 252 DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP 311

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
                + NEV+    L    + G   E  ++   +  +    +VV CNA+I  + + G +
Sbjct: 312 -----EKNEVSWTAMLKGYTNCGRLDEASELFNAMPIK----SVVACNAMILCFGQNGEV 362

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
            KA +VFD ++  K   TW+ M+  +   G    ALELF  M R G++P+  S ++ L  
Sbjct: 363 PKARQVFDQMR-EKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSV 421

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C     +D G  +   +       ++     ++ +  + G L +A  +    ++  D+V+
Sbjct: 422 CAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAV-KDVVM 480

Query: 382 WQTLLGACQLYG 393
           W +++     +G
Sbjct: 481 WNSIITGYAQHG 492



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 147/346 (42%), Gaps = 45/346 (13%)

Query: 37  SKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWY 96
           S     R+ +I  Y  S L ++  A  +F ++   +   +N+++ G   + +P  A    
Sbjct: 95  SNFIISRNSLITRY--SRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEA---- 148

Query: 97  RQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV 156
           + M       + ++ +  +        + E  ++   +     ++     T ++  Y K 
Sbjct: 149 QNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVS----WTAMVRGYVKE 204

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
           G I  A+ +F +M  +++ SW  ++ GL Q     EA  LF  M  + V       ++G 
Sbjct: 205 GMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVV--TRTNMIGG 262

Query: 217 LAACGHL---------------GAWKEGDKIHEYIREERLDM-----------NVVVCNA 250
               G L                +W     I  Y++ +++D+           N V   A
Sbjct: 263 YCQVGRLVEARMLFDEMPRRNVVSWT--TMITGYVQNQQVDIARKLFEVMPEKNEVSWTA 320

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           ++  Y  CG LD+A E+F+ +   KS+V  N M++ F  +G+ P+A ++F+QM     + 
Sbjct: 321 MLKGYTNCGRLDEASELFNAMPI-KSVVACNAMILCFGQNGEVPKARQVFDQMR----EK 375

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           D+ ++ A +      GL  D + LF  M   G++PN     SV+ +
Sbjct: 376 DEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSV 421



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 129/318 (40%), Gaps = 69/318 (21%)

Query: 123 ALFETLQIHSHVLRHGFLADALLG-TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
           ++F  L     VL   + ++ ++   +L+  Y+++G+I  A+ VFDEM  ++I SWN+++
Sbjct: 77  SMFSGLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIV 136

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           AG  Q     EA ++F +M                                         
Sbjct: 137 AGYFQNKRPQEAQNMFDKMS---------------------------------------- 156

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + N +  N ++  Y   G++++A EVFD +  R ++V+W  MV  +   G    A  LF 
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPER-NVVSWTAMVRGYVKEGMISEAETLFW 215

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           QM    V    VS+   L      G +D+  RLF+ M    V       G    +    G
Sbjct: 216 QMPEKNV----VSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQV----G 267

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM------------- 408
           RL EA  +   +    ++V W T++     Y   +  +IA RKL E+             
Sbjct: 268 RLVEARMLFDEMPR-RNVVSWTTMITG---YVQNQQVDIA-RKLFEVMPEKNEVSWTAML 322

Query: 409 -GSNNCGDFVLLSNLYAA 425
            G  NCG     S L+ A
Sbjct: 323 KGYTNCGRLDEASELFNA 340


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/446 (41%), Positives = 277/446 (62%), Gaps = 6/446 (1%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +  T +L  YA  G +   +++F  M  RD+ SW  ++A L + +L  E+ +LF RM 
Sbjct: 208 DLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMP 267

Query: 202 ----MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
               +     PN VT +  L AC  LGA  EG KIH  + E   D ++VV NA+++ Y +
Sbjct: 268 RHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGR 327

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           CG L  A  VFD ++ R+ +++W++M+ AFA  G    A+EL+ +M   G  PDD+ +++
Sbjct: 328 CGALGDAKIVFDGMR-RRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFIS 386

Query: 318 ALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
            L AC+++G+V+     F S+  +  V+P ++HY  +VD+LGRAG+L++A D+++ +   
Sbjct: 387 VLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFH 446

Query: 377 TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVR 436
              +L+ T+L AC+LY DVE  E A+  + E+   N   ++ L+N+Y+A +R  D  R+R
Sbjct: 447 PGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIR 506

Query: 437 KAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTS 496
           K M+ R +KK PG S+IEV   +H+F   DK H +  EIY ++  +  ++KE GY   T 
Sbjct: 507 KLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTK 566

Query: 497 CVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVY 556
            VL D+ E+EKEN L YHSEKLA+AFGLIST     +++ KNLR+C DCH   K+ISKV 
Sbjct: 567 VVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVT 626

Query: 557 NREIIVRDRVRFHRFKDGACSCKDYW 582
            REI+VRD  RFH F++G CSC DYW
Sbjct: 627 GREILVRDTNRFHHFQNGMCSCNDYW 652



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 169/399 (42%), Gaps = 54/399 (13%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFALKAC- 118
           A  +F  I    +  +  +L   A S   +NA   + +M R S  S  AL  +FAL    
Sbjct: 11  ARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHH 70

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
                LF+T+Q            D +  T +L V A    I  AK  FD+M  RD+ +W 
Sbjct: 71  EEAKTLFDTMQER----------DLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWT 120

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           A++A  A+      A + F +M    +F    +     L+A G  G  K   ++ + + E
Sbjct: 121 AMLAANAERGQMENARETFDQMPERNLFSWTSL-----LSAYGRSGDVKAAGRVFDSMPE 175

Query: 239 ERL---------------------------DMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
             L                           + +++   A++  YA  G L    E+F  +
Sbjct: 176 WNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRM 235

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR-----AGVKPDDVSYLAALCACNHAG 326
             R  L++W TMV A   +     + ELF++M R      G+ P+ V+++  L AC+  G
Sbjct: 236 PER-DLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLG 294

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            + +G ++  ++A  G   ++    ++V+  GR G L +A  IV       D++ W +++
Sbjct: 295 ALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDA-KIVFDGMRRRDVISWSSMI 353

Query: 387 GACQLYGDVEMA-EIASRKLVEMGSNNCGDFVLLSNLYA 424
            A    G V+ A E+  R L E       D + +S L+A
Sbjct: 354 SAFAQRGRVDEAMELYHRMLSE--GTLPDDIIFISVLFA 390



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 9/234 (3%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L AC+ + AL E  +IH+ V   GF  D ++   L++ Y + G +  AK VFD M  RD+
Sbjct: 287 LDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDV 346

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK-EGDKIH 233
            SW+++I+  AQ     EA++L+ RM  EG   P+++  +  L AC + G  +  GD   
Sbjct: 347 ISWSSMISAFAQRGRVDEAMELYHRMLSEGTL-PDDIIFISVLFACSNSGVVEASGDFFR 405

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD- 292
             + + +++  +     ++D+  + G L  A ++   +      + + TM+ A  ++ D 
Sbjct: 406 SIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDV 465

Query: 293 --GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
             G  A E+  ++      P    Y+      + A    D  R+   M   G+K
Sbjct: 466 ERGEAAAEVVFELDPENSSP----YITLANIYSAAKRPKDAARIRKLMEERGIK 515



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 25/245 (10%)

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
           ++ ++G +  A+++FD +  RD  SW  +++  A+    S A  +F RM    +   +  
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSL--GSWT 58

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
            +L A A  GH    +E   + + ++E     +++    ++ + A    ++ A   FD +
Sbjct: 59  ALLSAFALSGHH---EEAKTLFDTMQER----DLIAWTIMLTVLATFSNIEDAKYHFDQM 111

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
             R  LV W  M+ A A  G    A E F+QM    +     S+ + L A   +G V   
Sbjct: 112 PER-DLVAWTAMLAANAERGQMENARETFDQMPERNL----FSWTSLLSAYGRSGDVKAA 166

Query: 332 VRLFNSMANCGVKPNMKHYGSVV---DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            R+F+SM       N+  + +++    L G   R + A D +       D++ W  +L A
Sbjct: 167 GRVFDSMPEW----NLVAWTAMLTGYSLSGDVVRAKRAFDSMPE----RDLIAWTAMLSA 218

Query: 389 CQLYG 393
               G
Sbjct: 219 YAFNG 223


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/538 (39%), Positives = 316/538 (58%), Gaps = 39/538 (7%)

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N V +GLA   +   AVL   +ML+   R D +T   A+ AC+ +  +      H +VLR
Sbjct: 315 NYVRQGLA---REVLAVL--GEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLR 369

Query: 137 HGF-------------------------LADALLGTT------LLDVYAKVGEIVSAKKV 165
           +G                          + D +L  T      L+  + + G++ SA K+
Sbjct: 370 NGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKI 429

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           F  M   D+ SWN +I  L Q ++  EA++LF+ M+ EG+   ++VT++G  +ACG+LGA
Sbjct: 430 FSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGI-TADKVTMVGVASACGYLGA 488

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
                 IH YI+++ +  ++ +  A++DM+A+CG    A +VF+ +  ++ +  W   + 
Sbjct: 489 LDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIG 547

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVK 344
           A A+ G+G  A+ELF++M + G+KPD V ++A L A +H GLV+ G  +F SM +  G+ 
Sbjct: 548 AMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIA 607

Query: 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRK 404
           P   HYG +VDLLGRAG L EA  ++ S+ M  + V+W +LL AC+++ +V++A  A+ +
Sbjct: 608 PQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAER 667

Query: 405 LVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFT 464
           + E+     G  VLLSN+YA+  RWDDV +VR  +K +   K+PG S IE+ G I +F T
Sbjct: 668 ISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTT 727

Query: 465 SDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGL 524
            D+SH +   I   L EI  ++++ GY    + VL D+ E+EKE  L  HSEKLA+AF L
Sbjct: 728 GDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFAL 787

Query: 525 ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IST +   I+V KNLRIC DCH   KL+SK Y+REIIVRD  RFH F+ G CSC DYW
Sbjct: 788 ISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 191/381 (50%), Gaps = 7/381 (1%)

Query: 22  IKQLQAHLTTTG--QFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND--FN 77
           +KQL + +T  G       L  + S   E      L     A  LF + N        F+
Sbjct: 49  LKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFS 108

Query: 78  AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
           +++RG +       A++ +RQ++      D  T  F L AC +  AL E  Q+H  +++ 
Sbjct: 109 SLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKM 168

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           GF  D  +  +L+  Y + GEI   ++VFD+M  R++ SW +LI G A+     EAV LF
Sbjct: 169 GFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLF 228

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
             M   G+ +PN VT++G ++AC  L   + G+++   I E  L++N ++ NA++DMY K
Sbjct: 229 FEMVEVGI-RPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMK 287

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           CG +DKA ++FD     K+LV +NT++  +   G     L +  +M + G +PD ++ L+
Sbjct: 288 CGAIDKARKIFDEC-VDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLS 346

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           A+ AC+    V  G      +   G++       +++++  + G+ + AC +   + +  
Sbjct: 347 AVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRM-LNK 405

Query: 378 DMVLWQTLLGACQLYGDVEMA 398
             V W +L+      GD+E A
Sbjct: 406 TRVSWNSLIAGFVRNGDMESA 426



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 114/235 (48%), Gaps = 2/235 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           ++  A  +F  +       +N ++  L   S    A+  +R M      +D +T      
Sbjct: 422 DMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVAS 481

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC  + AL     IH ++ +     D  LGT L+D++A+ G+  SA +VF++M  RD+++
Sbjct: 482 ACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSA 541

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W A I  +A     + A++LF  M  +G+ KP+ V  +  L A  H G  ++G  I   +
Sbjct: 542 WTAAIGAMAMEGNGTGAIELFDEMLQQGI-KPDGVVFVALLTALSHGGLVEQGWHIFRSM 600

Query: 237 RE-ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           ++   +    V    ++D+  + GLL +A  + ++++   + V W +++ A  VH
Sbjct: 601 KDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVH 655


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/596 (35%), Positives = 343/596 (57%), Gaps = 42/596 (7%)

Query: 23   KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
            +Q+ AHL       +K   V ++++  Y  S    L YA  +F ++   +   +N+++ G
Sbjct: 499  RQIHAHLIRANI--TKNIIVETELVHMY--SECGRLNYAKEIFNRMAERNAYSWNSMIEG 554

Query: 83   LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
               + +   A+  ++QM     + D  + S  L +C  +    +  ++H+ ++R+    +
Sbjct: 555  YQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEE 614

Query: 143  ALLGTTLLDVYAKVGEI---------------------VSA----------KKVFDEMGV 171
             +L   L+D+YAK G +                     VSA          K +FD+M  
Sbjct: 615  GILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQ 674

Query: 172  RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDK 231
            R+ A WN+++AG A   L  E+ + F  M +E   + + +T++  +  C  L A + GD+
Sbjct: 675  RNTALWNSILAGYANKGLKKESFNHFLEM-LESDIEYDVLTMVTIVNLCSSLPALEHGDQ 733

Query: 232  IHEYI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +H  I ++  ++ +VV+  A++DMY+KCG + KA  VFDN+   K++V+WN M+  ++ H
Sbjct: 734  LHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNG-KNIVSWNAMISGYSKH 792

Query: 291  GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKH 349
            G    AL L+E+M + G+ P++V++LA L AC+H GLV++G+R+F SM  +  ++   +H
Sbjct: 793  GCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEH 852

Query: 350  YGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            Y  +VDLLGRAGRL++A + V+ + +  ++  W  LLGAC+++ D++M  +A+++L E+ 
Sbjct: 853  YTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELD 912

Query: 410  SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
              N G +V++SN+YAA  RW +V  +R+ MK + VKK PG S+IE+   I  F    K+H
Sbjct: 913  PQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTH 972

Query: 470  VKWREIYEKLDEIMFKIKEYGYAAGTSCVLH---DIGEEEKENALCYHSEKLAVAFGLIS 526
             K  EIY  L  +  + K  GY   TS +L    DI EEE+E  L  HSE+LA++ GLIS
Sbjct: 973  PKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLIS 1032

Query: 527  TSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
              + ++I+VFKNLRIC DCH   K ISK+  R II RD  RFH F++G CSC DYW
Sbjct: 1033 LPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 186/370 (50%), Gaps = 14/370 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ + L   G F+   F V + +I+ YA     E      +F ++   +   +N+++  
Sbjct: 296 KQVHSKLIACG-FKGDTF-VGNALIDMYAKCDDEESCLK--VFDEMGERNQVTWNSIISA 351

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A      +A++ + +M    ++S+       L A A +  + +  ++H H++R+   +D
Sbjct: 352 EAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSD 411

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
            +LG+ L+D+Y+K G +  A +VF  +  R+  S+NAL+AG  Q   A EA++L+  M+ 
Sbjct: 412 IILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQS 471

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           E   +P++ T    L  C +     +G +IH ++    +  N++V   ++ MY++CG L+
Sbjct: 472 EDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLN 531

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A E+F+ +  R +  +WN+M+  +  +G+   AL LF+QM   G+KPD  S  + L +C
Sbjct: 532 YAKEIFNRMAERNA-YSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSC 590

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYG----SVVDLLGRAGRLQEACDIVKSVSMGTD 378
                   G  L N +    V+  M+  G     +VD+  + G +  A  +    ++  D
Sbjct: 591 VSLSDSQKGRELHNFI----VRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQ-TIKKD 645

Query: 379 MVLWQTLLGA 388
           ++L   ++ A
Sbjct: 646 VILNNVMVSA 655



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 185/378 (48%), Gaps = 8/378 (2%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           ++QLQ+ +   G     LF V   +++ YA      +  A     +I   S   +NAV+ 
Sbjct: 194 VRQLQSSVVKAG-LNCNLF-VGGALVDGYA--RFGWMDDAVTSLDEIEGTSVVTWNAVIA 249

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
           G         A   + +ML+     D  T + AL+ C  + +     Q+HS ++  GF  
Sbjct: 250 GYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKG 309

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  +G  L+D+YAK  +  S  KVFDEMG R+  +WN++I+  AQ    ++A+ LF RM+
Sbjct: 310 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 369

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
             G +K N   +   L A   L    +G ++H ++    L+ ++++ +A++DMY+KCG++
Sbjct: 370 ESG-YKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMV 428

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALC 320
           ++A +VF ++  R   V++N ++  +   G    ALEL+  M    G++PD  ++   L 
Sbjct: 429 EEAHQVFRSLLERNE-VSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLT 487

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
            C +    + G ++   +    +  N+     +V +    GRL  A +I   ++   +  
Sbjct: 488 LCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMA-ERNAY 546

Query: 381 LWQTLLGACQLYGDVEMA 398
            W +++   Q  G+ + A
Sbjct: 547 SWNSMIEGYQQNGETQEA 564



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 168/358 (46%), Gaps = 8/358 (2%)

Query: 44  SKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG 102
           +KI+  YA S  L++L YA  LF ++   +   +N ++   A        +  Y +M   
Sbjct: 110 TKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGS 169

Query: 103 SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA 162
            + SD  T    +KAC  +  +    Q+ S V++ G   +  +G  L+D YA+ G +  A
Sbjct: 170 GNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDA 229

Query: 163 KKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
               DE+    + +WNA+IAG  +     EA  +F RM   GV  P+  T   AL  CG 
Sbjct: 230 VTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVC-PDNFTFASALRVCGA 288

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           L +   G ++H  +       +  V NA+IDMYAKC   +   +VFD +  R   VTWN+
Sbjct: 289 LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQ-VTWNS 347

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD--DGVRLFNSMAN 340
           ++ A A  G    AL LF +M  +G K +  +  + L A   AGL D   G  L   +  
Sbjct: 348 IISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMAS--AGLADIGKGRELHGHLVR 405

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             +  ++    ++VD+  + G ++EA  + +S+ +  + V +  LL      G  E A
Sbjct: 406 NLLNSDIILGSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALLAGYVQEGKAEEA 462



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 163/338 (48%), Gaps = 16/338 (4%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG---EIVSAK 163
           + L  S  ++ C    +      IH+ ++ +G+  DA L T +L +YA+ G   ++  A+
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           K+F+EM  R++ +WN +I   A+ +   E + L+ RM+  G F  ++ T    + AC  +
Sbjct: 130 KLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFS-DKFTFPSVIKACIAM 188

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
                  ++   + +  L+ N+ V  A++D YA+ G +D A    D I+   S+VTWN +
Sbjct: 189 EDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIE-GTSVVTWNAV 247

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +  +        A  +F++M + GV PD+ ++ +AL  C      D G ++ + +  CG 
Sbjct: 248 IAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGF 307

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
           K +     +++D+  +    +E+C  V       + V W +++ A   +G    A +   
Sbjct: 308 KGDTFVGNALIDMYAKCDD-EESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFL 366

Query: 404 KLVEMG--SN--NCGDFVLLSNLYAAYERWDDVGRVRK 437
           ++ E G  SN  N G  ++ S   A      D+G+ R+
Sbjct: 367 RMQESGYKSNRFNLGSILMASAGLA------DIGKGRE 398


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/517 (40%), Positives = 324/517 (62%), Gaps = 7/517 (1%)

Query: 71  PSTNDF--NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL 128
           P+ + F  +++ R  AH   P  A+ +Y ++L  +    +   + A KACA + AL   +
Sbjct: 70  PACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGM 129

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
            +H+H +  GF +D  + T L+ +Y+K G++  A+K+FD +  R + +WNA+I+G  Q  
Sbjct: 130 AVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNG 189

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
           LA  A+++++ M++  V  P+  T +  L+AC   GA   G ++   I  +++D++V + 
Sbjct: 190 LAERAIEVYREMQVAQVV-PDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLG 248

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           +A+++MYA+CGL+ KA + FD ++ R ++VTW +M+  + +HG G  A++LF  M R G 
Sbjct: 249 SALVNMYARCGLVSKARDWFDRLQER-NVVTWTSMIAGYGMHGHGREAIKLFHLMRREGP 307

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEAC 367
            P+DV+++A L AC HAGLV++G   F+SM    G+ P  +HY S+VD+ GRAG L +A 
Sbjct: 308 TPNDVTFVAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAM 367

Query: 368 D-IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426
             I  S+       +W  +LGAC+++ +  +    + +L+ +   N    VLLSN+YA  
Sbjct: 368 QFICDSIPEEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALS 427

Query: 427 ERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKI 486
            + + V +VR  M  R +KK  G+S IE+GG  H F   +KSH + REIY  L+E++ +I
Sbjct: 428 GKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYRYLEELIHRI 487

Query: 487 KEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS-IQVFKNLRICRDC 545
            + GY   T  VLH++ EEE+E AL YHSEKLAVA+GL+ +S +T+ I+V KNLRIC DC
Sbjct: 488 SDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTAPIRVIKNLRICGDC 547

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H  IK +S V +REIIVRD+ RFH FKDG CSC +YW
Sbjct: 548 HLAIKFMSSVESREIIVRDKHRFHHFKDGKCSCLEYW 584


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/479 (39%), Positives = 294/479 (61%), Gaps = 5/479 (1%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK--VGEIVSAKK 164
           D ++ +  +  CAR     + L++   +   G   DA    +LL       +  +   K+
Sbjct: 202 DVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKE 261

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           +F ++  + + SWN +IA     ++ +EAVD+F +M+   V  P+ +++   L ACG L 
Sbjct: 262 MFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAV-DPDAISIASVLPACGDLS 320

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A   G +IHEY+  +RL  N+++ NA+IDMYAKCG L+ A EVFD +K R  +V+W +M+
Sbjct: 321 ALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFR-DVVSWTSMI 379

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGV 343
            A+ ++G G  A+ LF +M   G+ PD +++++ L AC+HAGL+D+G   F  M   C +
Sbjct: 380 SAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKI 439

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
            P ++H+  +VDLLGRAG++ EA   +K + M  +  +W  LL AC++Y ++ +  +A+ 
Sbjct: 440 VPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAAD 499

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
           +L ++     G +VLLSN+YA   RW+DV  VR  MK + +KK+PG S  E+   +H F 
Sbjct: 500 QLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFL 559

Query: 464 TSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFG 523
             D+SH + ++IYE+LD  + K+KE GY   T   LHD+ EE+KE  L  HSEKLA+AF 
Sbjct: 560 AGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFA 619

Query: 524 LISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +++T+  + I++ KNLR+C DCH   KLISK+  REI +RD  RFH F +G CSC DYW
Sbjct: 620 ILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 174/386 (45%), Gaps = 38/386 (9%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F +I   +   FN ++R   ++   ++A+L ++ M       D  T    LKA +    
Sbjct: 93  IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 152

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L+  +QIH+ V+R G   +  +G  L+ +Y K G +V A +V D+M  RD+ SWN+L+AG
Sbjct: 153 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAG 212

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            A+     +A+++ K M++ G+ KP+  T+   L A                        
Sbjct: 213 CARNGQFDDALEVCKEMELLGL-KPDAGTMASLLPA------------------------ 247

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
              V N  +D       + + F    N    KSLV+WN M+  +  +     A+++F QM
Sbjct: 248 ---VTNTCLD---NVSFVKEMFMKLAN----KSLVSWNVMIAVYMNNSMPAEAVDIFLQM 297

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
               V PD +S  + L AC     +  G R+   +    ++PN+    +++D+  + G L
Sbjct: 298 EDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCL 357

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
           + A ++   +    D+V W +++ A  + G    A     ++ ++G N       +S L 
Sbjct: 358 EYAREVFDQMKF-RDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNP-DSIAFVSVLS 415

Query: 424 A-AYERWDDVGRVRKAMKNRDVKKVP 448
           A ++    D GR    +   + K VP
Sbjct: 416 ACSHAGLLDEGRYYFKLMTEECKIVP 441



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 10/243 (4%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           L+ +++   +F ++   S   +N ++    ++S P  AV  + QM   +   DA++ +  
Sbjct: 253 LDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASV 312

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L AC  + AL    +IH +V+R     + LL   L+D+YAK G +  A++VFD+M  RD+
Sbjct: 313 LPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDV 372

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW ++I+         +AV LF RM+  G+  P+ +  +  L+AC H G   EG    +
Sbjct: 373 VSWTSMISAYGMNGKGRDAVSLFSRMQDLGL-NPDSIAFVSVLSACSHAGLLDEGRYYFK 431

Query: 235 YIREE-----RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
            + EE     R++    VC  ++D+  + G +D+A+     +    +   W  ++ A  V
Sbjct: 432 LMTEECKIVPRIEH--FVC--MVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRV 487

Query: 290 HGD 292
           + +
Sbjct: 488 YSN 490



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 7/212 (3%)

Query: 129 QIHSHV-LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
           ++HS + + H   ++  LG  L+  YA  GE  S + +FDE+  +++  +N +I      
Sbjct: 56  KLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNN 115

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGAL-AACGHLGAWKEGDKIHEYIREERLDMNVV 246
           +L S+A+ +FK M   G+  P+  T    L A+ G    W  G +IH  +    LD+NV 
Sbjct: 116 HLYSDALLVFKNMAGHGI-DPDHYTYPCVLKASSGSEDLWV-GMQIHAAVVRVGLDLNVF 173

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V N +I MY KCG L +A  V D + CR  +V+WN++V   A +G    ALE+ ++M   
Sbjct: 174 VGNGLISMYGKCGCLVEACRVLDQMPCR-DVVSWNSLVAGCARNGQFDDALEVCKEMELL 232

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           G+KPD  +  + L A  +  L  D V     M
Sbjct: 233 GLKPDAGTMASLLPAVTNTCL--DNVSFVKEM 262


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/525 (38%), Positives = 315/525 (60%), Gaps = 14/525 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNA-VLWYRQMLRGSHRSDALTCSFALKACA 119
           A + F ++       +N ++ G A   +   A  L+Y  M +     +A+   +    C 
Sbjct: 143 AQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYI--ECG 200

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-RDIASWN 178
                   L+  SH  +   +   +  T ++  Y K  ++  A+ +F +M V +++ +WN
Sbjct: 201 -------DLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWN 253

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           A+I+G  + +   + + LF+ M  EG+ +PN   +  AL  C  L A + G +IH+ + +
Sbjct: 254 AMISGYVENSRPEDGLKLFRAMLEEGI-RPNSSGLSSALLGCSELSALQLGRQIHQIVSK 312

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L  +V    ++I MY KCG L  A+++F+ +K +K +V WN M+  +A HG+  +AL 
Sbjct: 313 STLCNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWNAMISGYAQHGNADKALC 371

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLL 357
           LF +M    ++PD ++++A L ACNHAGLV+ G+  F SM  +  V+P   HY  +VDLL
Sbjct: 372 LFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLL 431

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
           GRAG+L+EA  +++S+       ++ TLLGAC+++ +VE+AE A+ KL+++ S N   +V
Sbjct: 432 GRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYV 491

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
            L+N+YA+  RW+DV RVRK MK  +V KVPG+S+IE+   +H F +SD+ H +   I++
Sbjct: 492 QLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHK 551

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFK 537
           KL E+  K+K  GY       LH++ EE+KE  L +HSEKLAVAFG I   + + IQVFK
Sbjct: 552 KLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFK 611

Query: 538 NLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           NLRIC DCH  IK IS++  REIIVRD  RFH FKDG+CSC DYW
Sbjct: 612 NLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/523 (36%), Positives = 307/523 (58%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF  +    +  +  ++ G   +   + A+  +R+M       D  T    L AC  
Sbjct: 225 ARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL +  QIH++++R  +  +  +G+ L+D+Y+K   I  A+ VF  M  ++I SW AL
Sbjct: 285 LSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTAL 344

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G  Q   + EAV +F  M+ +G+  P++ T+   +++C +L + +EG + H       
Sbjct: 345 IVGYGQNGCSEEAVRVFSEMQRDGI-DPDDYTLGSVISSCANLASLEEGAQFHCLALVSG 403

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L   + V NA++ +Y KCG ++ A  +FD +      V+W  +V  +A  G     ++LF
Sbjct: 404 LMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ-VSWTALVSGYAQFGRAKETIDLF 462

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
           E+M   GVKPD V+++  L AC+ AG V+ G   F+SM  + G+ P   HY  ++DL  R
Sbjct: 463 EKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSR 522

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           +G+L+EA + +K + M  D + W TLL AC+L GD+E+ + A+  L+E+   N   +VLL
Sbjct: 523 SGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLL 582

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
            +++AA  +W++V ++R+ M++R VKK PG S+I+    +H F   D+SH   + IYEKL
Sbjct: 583 CSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKL 642

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           + +  K+ E GY    S VLHD+ + +K + + +HSEKLA+AFGLI   +   I++ KNL
Sbjct: 643 EWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNL 702

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH+  K ISK+  R+I+VRD VRFH+F DG CSC D+W
Sbjct: 703 RVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 186/382 (48%), Gaps = 50/382 (13%)

Query: 55  LNELAYA------HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG--SHRS 106
           L+ LA+A       ALF  +       +NAV+ G +       AV  Y  +L+   S R 
Sbjct: 79  LSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRP 138

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF 166
             +T S  + A + +       Q H  +LR GF A+A +G+ L+D+YAK+  +  AK+ F
Sbjct: 139 SRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAF 198

Query: 167 DE-------------------------------MGVRDIASWNALIAGLAQGNLASEAVD 195
           DE                               M  RD  +W  ++ G  Q  L SEA++
Sbjct: 199 DEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALE 258

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +F+RM+ +G+   ++ T    L ACG L A ++G +IH YI   R D NV V +A++DMY
Sbjct: 259 IFRRMRFQGI-AIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMY 317

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KC  +  A  VF  + C K++++W  +++ +  +G    A+ +F +M R G+ PDD + 
Sbjct: 318 SKCRSIKLAETVFRRMTC-KNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTL 376

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV----VDLLGRAGRLQEACDIVK 371
            + + +C +   +++G + F+ +A   +   + HY +V    V L G+ G +++A  +  
Sbjct: 377 GSVISSCANLASLEEGAQ-FHCLA---LVSGLMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 372 SVSMGTDMVLWQTLLGACQLYG 393
            +S   D V W  L+     +G
Sbjct: 433 EMSF-HDQVSWTALVSGYAQFG 453



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 142/295 (48%), Gaps = 16/295 (5%)

Query: 3   NLNALLQKCSSNGAVSHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
              ++L  C   GA+S +   KQ+ A++  T ++   +F V S +++ Y  S    +  A
Sbjct: 274 TFGSILTAC---GALSALEQGKQIHAYIIRT-RYDDNVF-VGSALVDMY--SKCRSIKLA 326

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             +FR++   +   + A++ G   +     AV  + +M R     D  T    + +CA +
Sbjct: 327 ETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANL 386

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
            +L E  Q H   L  G +    +   L+ +Y K G I  A ++FDEM   D  SW AL+
Sbjct: 387 ASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALV 446

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           +G AQ   A E +DLF++M  +GV KP+ VT +G L+AC   G  ++G     Y    + 
Sbjct: 447 SGYAQFGRAKETIDLFEKMLAKGV-KPDGVTFIGVLSACSRAGFVEKG---RSYFHSMQK 502

Query: 242 DMNVVVCN----AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           D  +V  +     +ID+Y++ G L +A E    +      + W T++ A  + GD
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGD 557



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 128/322 (39%), Gaps = 66/322 (20%)

Query: 149 LLDVYAKVGEIVSAKKVFD-------------------------------EMGVRDIASW 177
           LL  Y K G    A++VFD                                M  RDI S+
Sbjct: 47  LLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSY 106

Query: 178 NALIAGLAQGNLASEAVDLF-KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           NA+IAG + G   ++AV ++   ++ +   +P+ +T+   + A   LG    G + H  I
Sbjct: 107 NAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQI 166

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI----------------KCR------ 274
                  N  V + ++DMYAK  L+  A   FD +                +C+      
Sbjct: 167 LRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEAR 226

Query: 275 --------KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
                   +  +TW TMV  F  +G    ALE+F +M   G+  D  ++ + L AC    
Sbjct: 227 RLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            ++ G ++   +       N+    ++VD+  +   ++ A  + + ++   +++ W  L+
Sbjct: 287 ALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTC-KNIISWTALI 345

Query: 387 GACQLYGDVEMAEIASRKLVEM 408
                YG    +E A R   EM
Sbjct: 346 VG---YGQNGCSEEAVRVFSEM 364


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/557 (36%), Positives = 315/557 (56%), Gaps = 41/557 (7%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK---- 116
           A  LF ++   +T  +  ++ G A + +   A+     +L+  HRS  L    +L     
Sbjct: 372 AKELFDKMPFRNTISWAGMIAGYAQNGRSEEAL----GLLQELHRSGMLPSLSSLTSIFF 427

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC+ ++AL    Q+HS  ++ G   ++     L+ +Y K   +  A++VF  M  +DI S
Sbjct: 428 ACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVS 487

Query: 177 WNALIAGLAQGNLASEAVDLFKRM----------------------KMEGVFK------- 207
           WN+ +A L Q +L  EA + F  M                      +  G FK       
Sbjct: 488 WNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHE 547

Query: 208 -PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            PN   +   L  CG LGA K G +IH    +  +D  ++V NA+I MY KCG  D    
Sbjct: 548 LPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSR-R 606

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +FD ++  + + TWNT++  +A HG G  A+++++ M  AGV P++V+++  L AC+HAG
Sbjct: 607 IFDLME-ERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAG 665

Query: 327 LVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LVD+G + F SM+ + G+ P  +HY  +VDLLGR G +Q A   +  + +  D V+W  L
Sbjct: 666 LVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSAL 725

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGAC+++ + E+ + A+ KL  +  +N G++V+LSN+Y++   W +V  VRK MK + V 
Sbjct: 726 LGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVI 785

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K PG S+ ++   +H F T DK H +  EI   L+E+   +K  GY   T  VLHDI EE
Sbjct: 786 KEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEE 845

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           +KE++L YHSEKLAVA+ L++T +   IQ+ KNLRIC DCH  IK +S V  R+I +RD 
Sbjct: 846 QKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDG 905

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F++G+CSC+D+W
Sbjct: 906 NRFHHFRNGSCSCEDFW 922



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 6/190 (3%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L+  Y + G +  AK++FD+M  R+  SW  +IAG AQ   + EA+ L + +   G+  P
Sbjct: 359 LITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML-P 417

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           +  ++     AC ++ A + G ++H    +     N   CNA+I MY KC  ++ A +VF
Sbjct: 418 SLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVF 477

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
             +   K +V+WN+ + A   +     A   F+ M    +  DDVS+   + A  HA   
Sbjct: 478 SRM-VTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQS 532

Query: 329 DDGVRLFNSM 338
           ++ +  F +M
Sbjct: 533 NEAMGAFKTM 542



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 161/381 (42%), Gaps = 55/381 (14%)

Query: 52  LSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTC 111
           L  L  +  A  +F  +       +N+++    H+  P  A   Y  +  G+ R+ A+  
Sbjct: 44  LGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAIL- 102

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
              L    R+  + E  ++   +L    +A       ++  Y + G+I  A+++FD M  
Sbjct: 103 ---LSGYGRLGRVLEARRVFDGMLERNTVA----WNAMISCYVQNGDITMARRLFDAMPS 155

Query: 172 RDIASWNALIAG----------------LAQGNLAS---------------EAVDLFKRM 200
           RD++SWN+++ G                + + NL S               +A D+F +M
Sbjct: 156 RDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKM 215

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK-CG 259
             EG+  P++     AL+A   LG     + +     +   + +VV+  A++++Y++   
Sbjct: 216 HREGLL-PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTS 274

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD--DVSYLA 317
           +LD A + F+++  R    TW+TM+ A +  G    A+ ++E   R  VK      + + 
Sbjct: 275 VLDTAIKFFESMIERNEY-TWSTMIAALSHGGRIDAAIAVYE---RDPVKSIACRTALIT 330

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            L  C   G +DD   LF  +     +P +  + +++    + G + EA ++   +    
Sbjct: 331 GLAQC---GRIDDARILFEQIP----EPIVVSWNALITGYMQNGMVNEAKELFDKMPF-R 382

Query: 378 DMVLWQTLLGACQLYGDVEMA 398
           + + W  ++      G  E A
Sbjct: 383 NTISWAGMIAGYAQNGRSEEA 403


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/545 (36%), Positives = 317/545 (58%), Gaps = 6/545 (1%)

Query: 39  LFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQ 98
           L  + + +++ YA      L  A  LF  +   +   +N+++     +  P  A++ +++
Sbjct: 270 LVNIATALVDMYA--KCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQK 327

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           ML    +   ++   AL ACA +  L     IH   +      +  +  +L+ +Y K  E
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKE 387

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           + +A  +F ++  R I SWNA+I G AQ     EA++ F +M+   V KP+  T +  + 
Sbjct: 388 VDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTV-KPDTFTYVSVIT 446

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           A   L        IH  +    LD NV V  A++DMYAKCG +  A  +FD +  R  + 
Sbjct: 447 AIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH-VT 505

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           TWN M+  +  HG G  ALELFE+M +  ++P+ V++L+ + AC+H+GLV+ G++ F+ M
Sbjct: 506 TWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMM 565

Query: 339 A-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
             N  ++P+M HYG++VDLLGRAGRL EA D +  + +   + ++  +LGACQ++ +V  
Sbjct: 566 KENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNF 625

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
           AE  + +L E+   + G  VLL+N+Y A   W+ VG+VR +M  + ++K PG S +E+  
Sbjct: 626 AEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKN 685

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            +H FF+   +H   ++IY  L++++ +IKE GY   T+ +L  + ++ KE  L  HSEK
Sbjct: 686 EVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLEDDVKEQLLSSHSEK 744

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LA++FGL++T+  T+I V KNLR+C DCH+  K IS V  REIIVRD  RFH FK+GACS
Sbjct: 745 LAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACS 804

Query: 578 CKDYW 582
           C DYW
Sbjct: 805 CGDYW 809



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 164/325 (50%), Gaps = 11/325 (3%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL++CSS   + HI     +  L     FQ+KL  +      F     ++E A    +F 
Sbjct: 43  LLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSL------FCRYGSVDEAA---RVFE 93

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            I+      +  +L+G A  S    A+ ++ +M            ++ LK C     L  
Sbjct: 94  PIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRV 153

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             +IH  +++ GF  D    T L ++YAK  ++  A+KVFD M  RD+ SWN ++AG +Q
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQ 213

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
             +A  A+++   M  E + KP+ +T++  L A   L   + G +IH Y      D  V 
Sbjct: 214 NGMARMALEMVNLMCEENL-KPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVN 272

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           +  A++DMYAKCG L  A  +FD +   +++V+WN+M+ A+  + +   A+ +F++M   
Sbjct: 273 IATALVDMYAKCGSLKTARLLFDGM-LERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDE 331

Query: 307 GVKPDDVSYLAALCACNHAGLVDDG 331
           GVKP DVS + AL AC   G ++ G
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERG 356


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/508 (37%), Positives = 299/508 (58%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N+++ G ++      A+  +  M +     +  T S  LK+ A   A     Q+H+  +
Sbjct: 358 WNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISI 417

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + G+  D  +  +LLD Y K   +  A KVF+     D+ ++ ++I   +Q  L  EA+ 
Sbjct: 418 KSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALK 477

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           ++ RM+   + KP+         AC +L A+++G +IH ++ +  L  +V   N++++MY
Sbjct: 478 MYLRMQDRDI-KPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMY 536

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG +D A  +F+ I  R  +V+W+ M+   A HG G +AL+LF QM + G+ P+ ++ 
Sbjct: 537 AKCGSIDDASCIFNEISWR-GIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITL 595

Query: 316 LAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           ++ L ACNHAGLV +  R F  M    G+ P  +HY  +VD+LGR GRL EA  +VK + 
Sbjct: 596 VSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMP 655

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
                 +W  LLGA +++ ++E+   A+  L+ +     G  +LL+N+YA+   WD+V +
Sbjct: 656 FQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAK 715

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VR++MKN  VKK PG S+IE+   ++ F   D+SH + +EIY KLD++  ++   GY   
Sbjct: 716 VRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPM 775

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
               LHD+ + EKE  L +HSEKLAVAFGLI+T     I+V KNLR+C DCH   K ISK
Sbjct: 776 IETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISK 835

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V +REIIVRD  RFH F+DG+CSC DYW
Sbjct: 836 VASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 177/350 (50%), Gaps = 9/350 (2%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +++ YA S   E A A  +F +I  P    +NAV+ G     K   A+    +M  GS+R
Sbjct: 229 LLDMYAKSGCPEAAIA--VFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKM--GSYR 284

Query: 106 --SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
                 T S ALKACA +  +    Q+HS +++     D+ +G  L+D+Y+K G +  A+
Sbjct: 285 VAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDAR 344

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
            VFD M  +D+  WN++I+G +      EA+ LF  M  EG+ + N+ T+   L +    
Sbjct: 345 MVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGL-EFNQTTLSTILKSTAGS 403

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
            A    +++H    +     +  V N+++D Y KC LL+ A +VF+ +   + LV + +M
Sbjct: 404 QANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFE-VCPAEDLVAYTSM 462

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           + A++ +G G  AL+++ +M    +KPD   + +   AC +    + G ++   +  CG+
Sbjct: 463 ITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGL 522

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
             ++    S+V++  + G + +A  I   +S    +V W  ++G    +G
Sbjct: 523 LSDVFAGNSLVNMYAKCGSIDDASCIFNEISW-RGIVSWSAMIGGLAQHG 571



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 173/360 (48%), Gaps = 20/360 (5%)

Query: 76  FNAVLRGLAHS-----SKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           F++VL+G + +      K  + V    +M+      +  + S  L ACA +      +++
Sbjct: 151 FSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKV 210

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H ++++ G+ +D      LLD+YAK G   +A  VF E+   DI SWNA+IAG       
Sbjct: 211 HGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKN 270

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
             A+ L  +M    V  P+  T+  AL AC  +G  K G ++H  + +  ++ +  V   
Sbjct: 271 DLALKLLGKMGSYRV-APSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVG 329

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           +IDMY+KCGLL  A  VFD +   K ++ WN+++  ++  G    A+ LF  M + G++ 
Sbjct: 330 LIDMYSKCGLLQDARMVFD-LMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEF 388

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG----SVVDLLGRAGRLQEA 366
           +  +    L +   AG   +G      +    +K   ++ G    S++D  G+   L++A
Sbjct: 389 NQTTLSTILKST--AGSQANG--FCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDA 444

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC-GDFVLLSNLYAA 425
             + + V    D+V + +++ A   YG   + E A +  + M   +   D  + S+L+ A
Sbjct: 445 AKVFE-VCPAEDLVAYTSMITAYSQYG---LGEEALKMYLRMQDRDIKPDAFIFSSLFNA 500



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 121/276 (43%), Gaps = 41/276 (14%)

Query: 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV---- 205
           +++Y+K      A+K+  +    D+ SW+ALI+G  Q     EA+  +  M + G     
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 206 -----------------------------------FKPNEVTVLGALAACGHLGAWKEGD 230
                                                PNE ++   L AC  L     G 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           K+H Y+ +   D +    NA++DMYAK G  + A  VF  I  +  +V+WN ++    +H
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLH 267

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
                AL+L  +MG   V P   +  +AL AC   GLV  G +L +++    ++P+    
Sbjct: 268 EKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVG 327

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
             ++D+  + G LQ+A  +V  +    D+++W +++
Sbjct: 328 VGLIDMYSKCGLLQDA-RMVFDLMPXKDVIVWNSII 362



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 45/199 (22%)

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           +++Y+KC     A ++  +      LV+W+ ++  +  +G G  AL  + +M   G K +
Sbjct: 89  VNLYSKCQCFRVARKLVID-SSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGN 147

Query: 312 DVSYLAALCACNHAGLVDDG-----VRLFNSMANCGVKPN-------------------- 346
           + ++ + L  C+    ++ G     V L   M + G+ PN                    
Sbjct: 148 EFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYG 207

Query: 347 MKHYG---------------SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           MK +G               +++D+  ++G  + A  +   +    D+V W  ++  C L
Sbjct: 208 MKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVL 266

Query: 392 YGDVEMAEIASRKLVEMGS 410
           +   E  ++A + L +MGS
Sbjct: 267 H---EKNDLALKLLGKMGS 282


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/557 (36%), Positives = 315/557 (56%), Gaps = 41/557 (7%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK---- 116
           A  LF ++   +T  +  ++ G A + +   A+     +L+  HRS  L    +L     
Sbjct: 372 AKELFDKMPFRNTISWAGMIAGYAQNGRSEEAL----GLLQELHRSGMLPSLSSLTSIFF 427

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC+ ++AL    Q+HS  ++ G   ++     L+ +Y K   +  A++VF  M  +DI S
Sbjct: 428 ACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVS 487

Query: 177 WNALIAGLAQGNLASEAVDLFKRM----------------------KMEGVFK------- 207
           WN+ +A L Q +L  EA + F  M                      +  G FK       
Sbjct: 488 WNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHE 547

Query: 208 -PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            PN   +   L  CG LGA K G +IH    +  +D  ++V NA+I MY KCG  D    
Sbjct: 548 LPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSR-R 606

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +FD ++  + + TWNT++  +A HG G  A+++++ M  AGV P++V+++  L AC+HAG
Sbjct: 607 IFDLME-ERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAG 665

Query: 327 LVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LVD+G + F SM+ + G+ P  +HY  +VDLLGR G +Q A   +  + +  D V+W  L
Sbjct: 666 LVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSAL 725

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGAC+++ + E+ + A+ KL  +  +N G++V+LSN+Y++   W +V  VRK MK + V 
Sbjct: 726 LGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVI 785

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K PG S+ ++   +H F T DK H +  EI   L+E+   +K  GY   T  VLHDI EE
Sbjct: 786 KEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEE 845

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           +KE++L YHSEKLAVA+ L++T +   IQ+ KNLRIC DCH  IK +S V  R+I +RD 
Sbjct: 846 QKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDG 905

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F++G+CSC+D+W
Sbjct: 906 NRFHHFRNGSCSCEDFW 922



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 6/190 (3%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L+  Y + G +  AK++FD+M  R+  SW  +IAG AQ   + EA+ L + +   G+  P
Sbjct: 359 LITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML-P 417

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           +  ++     AC ++ A + G ++H    +     N   CNA+I MY KC  ++ A +VF
Sbjct: 418 SLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVF 477

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
             +   K +V+WN+ + A   +     A   F+ M    +  DDVS+   + A  HA   
Sbjct: 478 SRM-VTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQS 532

Query: 329 DDGVRLFNSM 338
           ++ +  F +M
Sbjct: 533 NEAMGAFKTM 542



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 161/381 (42%), Gaps = 55/381 (14%)

Query: 52  LSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTC 111
           L  L  +  A  +F  +       +N+++    H+  P  A   Y  +  G+ R+ A+  
Sbjct: 44  LGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAIL- 102

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
              L    R+  + E  ++   +L    +A       ++  Y + G+I  A+++FD M  
Sbjct: 103 ---LSGYGRLGRVLEARRVFDGMLERNTVA----WNAMISCYVQNGDITMARRLFDAMPS 155

Query: 172 RDIASWNALIAG----------------LAQGNLAS---------------EAVDLFKRM 200
           RD++SWN+++ G                + + NL S               +A D+F +M
Sbjct: 156 RDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKM 215

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK-CG 259
             EG+  P++     AL+A   LG     + +     +   + +VV+  A++++Y++   
Sbjct: 216 HREGLL-PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTS 274

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD--DVSYLA 317
           +LD A + F+++  R    TW+TM+ A +  G    A+ ++E   R  VK      + + 
Sbjct: 275 VLDTAIKFFESMIERNEY-TWSTMIAALSHGGRIDAAIAVYE---RDPVKSIACRTALIT 330

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            L  C   G +DD   LF  +     +P +  + +++    + G + EA ++   +    
Sbjct: 331 GLAQC---GRIDDARILFEQIP----EPIVVSWNALITGYMQNGMVNEAKELFDKMPF-R 382

Query: 378 DMVLWQTLLGACQLYGDVEMA 398
           + + W  ++      G  E A
Sbjct: 383 NTISWAGMIAGYAQNGRSEEA 403


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/522 (36%), Positives = 311/522 (59%), Gaps = 5/522 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF--ALKACARV 121
           LF+++   +   + +++ GL    +   A+  +RQM+         + ++   + ACA  
Sbjct: 157 LFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANA 216

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
            AL++ +QIH+HV + G+  DA +   L+  YA   ++  + +VF      ++  W AL+
Sbjct: 217 SALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALV 276

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            G        +A+ +F  M  EGV  PN+ +   AL +C  L A   G +IH    +  L
Sbjct: 277 TGYGLNCKHEDALKVFGEMMREGVL-PNQSSFTSALNSCCGLEALDWGREIHTAAVKLGL 335

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + +V V N++I MY +CG L+    +F  I  +K++V+WN++++  A HG G  AL  F 
Sbjct: 336 ETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQHGCGMWALAFFN 394

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRA 360
           QM R+ V+PD++++   L AC+H+G+   G  LF   + N   +  + HY  +VD+LGR+
Sbjct: 395 QMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRS 454

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G+L+EA ++++++ +  + ++W  LL AC ++  +E+AE A++ ++++  +    +VLLS
Sbjct: 455 GKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLS 514

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           NLYA+  RW DV R+R+ MK R + K PG S+I + G  ++F + D+SH     IY+KL+
Sbjct: 515 NLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLE 574

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
            +  K+KE GY       LHD+ +E+KE  L YHSE+LA+ FGLIST E ++I V KNLR
Sbjct: 575 WLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLR 634

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +C DCH  IKLI+K+  R+IIVRD  RFH F DG CSC DYW
Sbjct: 635 VCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 120/242 (49%), Gaps = 3/242 (1%)

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV-FKPNEV 211
           Y   G +    ++F EM  R++ SW ++I GL Q   + EA+ LF++M   GV  KP   
Sbjct: 145 YCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSS 204

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T    + AC +  A  +G +IH ++ +     +  +  A+I  YA C  ++ +  VF   
Sbjct: 205 TYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHG- 263

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
           K   ++V W  +V  + ++     AL++F +M R GV P+  S+ +AL +C     +D G
Sbjct: 264 KLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWG 323

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             +  +    G++ ++    S++ +  R G L +   I K +S   ++V W +++  C  
Sbjct: 324 REIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQ 382

Query: 392 YG 393
           +G
Sbjct: 383 HG 384



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 93/213 (43%), Gaps = 16/213 (7%)

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           I  A+ VFD++   D+  +  +I G A+      A+ LF  M ++ V   N  +++    
Sbjct: 27  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWN--SMIKGCF 84

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
            C  L   ++       + +E  + +VV    +I+ + + G ++ A  +F  +  R  + 
Sbjct: 85  DCADLTMARK-------LFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR-DIA 136

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
            WN+M+  +  +G     L LF++M    V    +S+ + +   +  G  ++ + LF  M
Sbjct: 137 AWNSMIYGYCCNGRVEDGLRLFQEMPCRNV----ISWTSMIGGLDQHGRSEEALGLFRQM 192

Query: 339 ANCG--VKPNMKHYGSVVDLLGRAGRLQEACDI 369
             CG  VKP    Y  V+     A  L +   I
Sbjct: 193 MGCGVEVKPTSSTYCCVITACANASALYQGVQI 225


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/545 (37%), Positives = 316/545 (57%), Gaps = 13/545 (2%)

Query: 42  VRSKIIEFYA-LSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL-WYRQM 99
           V   +++ YA L     + +A  +F+ +   +   + A++ G   S    N V+  +R+M
Sbjct: 283 VSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREM 342

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
           L  S R + +T S  LKACA +       QIH+HVL+       ++G  L+ +YA+ G +
Sbjct: 343 LNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCM 402

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP-NEVTVLGALA 218
             A+K FD++   +I S +         ++ +E  +     K+EG+    +  T    L+
Sbjct: 403 EEARKAFDQLYETNILSMSP--------DVETERNNASCSSKIEGMDDGVSTFTFASLLS 454

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           A   +G   +G K+H    +     +  + N+++ MYA+CG L+ A   FD +K   +++
Sbjct: 455 AAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMK-DHNVI 513

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W +++   A HG   +AL +F  M  AGVKP+DV+Y+A L AC+H GLV +G   F SM
Sbjct: 514 SWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSM 573

Query: 339 A-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
             + G+ P M+HY  +VDLL R+G ++EA   +  +    D ++W+TLL AC+ YG+ E+
Sbjct: 574 QKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEI 633

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
            EIA+  ++ +   +   +VLLSNLYA    WD+V R+R  M+++++ K  G S+++VG 
Sbjct: 634 GEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGN 693

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            IH+F   D SH    +IY KL  ++ +IK+ GY   TS VLHD+ EE KE  L  HSEK
Sbjct: 694 TIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQYLLQHSEK 753

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           +AVAFGLI+TS    +++FKNLR+C DCH  IK ISK   REII+RD  RFHR KDG CS
Sbjct: 754 IAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGICS 813

Query: 578 CKDYW 582
           C +YW
Sbjct: 814 CGEYW 818



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 135/273 (49%), Gaps = 18/273 (6%)

Query: 105 RSDALTCSFALKAC-ARVLALFETLQIHSHVLRHGFLA-DALLGTTLLDVYAKVGEIVSA 162
           R +A T   A +AC  + L       +   VL+ GF   D  +G  L+D++A+ G++V+A
Sbjct: 140 RPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAA 199

Query: 163 KKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
           ++VFD +  R    W  LI    Q   AS+ V+LF  M  +G F+P+  ++   ++AC  
Sbjct: 200 QRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDG-FEPDGYSMSSMISACTE 258

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL---LDKAFEVFDNIKCRKSLVT 279
           LG+ + G ++H       L  +  V   ++DMYAK  +   ++ A +VF  +  R ++++
Sbjct: 259 LGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMP-RHNVMS 317

Query: 280 WNTMVMAFAVHG-DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR----- 333
           W  ++  +   G      + LF +M    ++P+ ++Y   L AC +    D G +     
Sbjct: 318 WTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHV 377

Query: 334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           L  S+A+  V  N     ++V +   +G ++EA
Sbjct: 378 LKTSIAHVNVVGN-----ALVSMYAESGCMEEA 405



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 9/240 (3%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL-ADALLGTTLLDVYAKVG 157
           +L   H  DA   +  L + AR   L     +H  +LR   L  DA++  +LL +Y+K G
Sbjct: 34  VLSSDHSCDA---AKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCG 90

Query: 158 EIVSAKKVFDEM-GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
            + +A++VFD+M GVRD+ SW A+ + LA+     E++ L   M      +PN  T+  A
Sbjct: 91  AVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLLGEMLEL-GLRPNAFTLCAA 149

Query: 217 LAAC--GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             AC    L     G  +   ++      +V V  A+IDM+A+ G L  A  VFD +  R
Sbjct: 150 ARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIER 209

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
            S+V W  ++  +   G   + +ELF  M   G +PD  S  + + AC   G V  G +L
Sbjct: 210 TSVV-WTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQL 268


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/453 (39%), Positives = 285/453 (62%), Gaps = 5/453 (1%)

Query: 133 HVLR-HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
           H +R  G + D +  +T++  Y + G +  A++VF E   +DI  W A++ G A+     
Sbjct: 245 HQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREE 304

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           +A+ LF  M +E + +P+  T+   +++C  L +   G  +H       L+ N++V +A+
Sbjct: 305 DALLLFNEMLLEHI-EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSAL 363

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           IDMY+KCG +D A  VF N+   +++V+WN M++  A +G    ALELFE M +   KPD
Sbjct: 364 IDMYSKCGFIDDARSVF-NLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPD 422

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           +V+++  L AC H   ++ G   F+S++N  G+ P + HY  +V+LLGR GR+++A  ++
Sbjct: 423 NVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALI 482

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
           K+++   D ++W TLL  C   GD+  AE+A+R L E+       +++LSN+YA+  RW 
Sbjct: 483 KNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWK 542

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
           DV  VR  MK+++VKK  GFS+IE+   +H+F + D++H +  +IYEKL+ ++ K++E G
Sbjct: 543 DVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEG 602

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS-IQVFKNLRICRDCHDVI 549
           +   T+ VLHD+GE+EK  ++C+HSEKLA+AFGLI      S I++ KN+RIC DCH+ +
Sbjct: 603 FTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFM 662

Query: 550 KLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K  S++  R+II+RD  RFH F  G CSC D W
Sbjct: 663 KFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 163/344 (47%), Gaps = 20/344 (5%)

Query: 110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
           T SF       + A F  L+   ++       D      LL  YAK G I + K  FD M
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRM 115

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
             RD  S+N  IAG +  +   E+++LFKRM+ EG F+P E T++  L A   L   + G
Sbjct: 116 PFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREG-FEPTEYTIVSILNASAQLLDLRYG 174

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
            +IH  I       NV + NA+ DMYAKCG +++A  +FD +  +K+LV+WN M+  +A 
Sbjct: 175 KQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLT-KKNLVSWNLMISGYAK 233

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSY---LAALCACNHAGLVDDGVRLFNSMANCGVKPN 346
           +G   + + L  QM  +G  PD V+    +AA C C   G VD+  R+F+       + +
Sbjct: 234 NGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQC---GRVDEARRVFSEFK----EKD 286

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSV---SMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
           +  + +++    + GR ++A  +   +    +  D     +++ +C     +   +    
Sbjct: 287 IVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHG 346

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYER---WDDVGRVRKAMKNRDV 444
           K +  G NN  + ++ S L   Y +    DD   V   M  R+V
Sbjct: 347 KSILAGLNN--NLLVSSALIDMYSKCGFIDDARSVFNLMPTRNV 388



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 145/331 (43%), Gaps = 38/331 (11%)

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           A F ++    +  +N  + G + +S P  ++  +++M R        T    L A A++L
Sbjct: 110 ATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLL 169

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            L    QIH  ++   FL +  +   L D+YAK GEI  A+ +FD +  +++ SWN +I+
Sbjct: 170 DLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMIS 229

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G A+     + + L  +M++ G   P++VT+   +AA                       
Sbjct: 230 GYAKNGQPEKCIGLLHQMRLSG-HMPDQVTMSTIIAA----------------------- 265

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
                       Y +CG +D+A  VF   K  K +V W  M++ +A +G    AL LF +
Sbjct: 266 ------------YCQCGRVDEARRVFSEFK-EKDIVCWTAMMVGYAKNGREEDALLLFNE 312

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M    ++PD  +  + + +C     +  G  +       G+  N+    +++D+  + G 
Sbjct: 313 MLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGF 372

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + +A  +   +    ++V W  ++  C   G
Sbjct: 373 IDDARSVFNLMPT-RNVVSWNAMIVGCAQNG 402



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           + A++ G A + +  +A+L + +ML      D+ T S  + +CA++ +L     +H   +
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI 349

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             G   + L+ + L+D+Y+K G I  A+ VF+ M  R++ SWNA+I G AQ     +A++
Sbjct: 350 LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALE 409

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER---LDMNVVVCNAVI 252
           LF+ M ++  FKP+ VT +G L+AC H    ++G +  + I  +      ++   C  ++
Sbjct: 410 LFENM-LQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYAC--MV 466

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           ++  + G +++A  +  N+      + W+T++   +  GD
Sbjct: 467 NLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGD 506


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/522 (36%), Positives = 311/522 (59%), Gaps = 5/522 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF--ALKACARV 121
           LF+++   +   + +++ GL    +   A+  +RQM+         + ++   + ACA  
Sbjct: 141 LFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANA 200

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
            AL++ +QIH+HV + G+  DA +   L+  YA   ++  + +VF      ++  W AL+
Sbjct: 201 SALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALV 260

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            G        +A+ +F  M  EGV  PN+ +   AL +C  L A   G +IH    +  L
Sbjct: 261 TGYGLNCKHEDALKVFGEMMREGVL-PNQSSFTSALNSCCGLEALDWGREIHTAAVKLGL 319

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + +V V N++I MY +CG L+    +F  I  +K++V+WN++++  A HG G  AL  F 
Sbjct: 320 ETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQHGCGMWALAFFN 378

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRA 360
           QM R+ V+PD++++   L AC+H+G+   G  LF   + N   +  + HY  +VD+LGR+
Sbjct: 379 QMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRS 438

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G+L+EA ++++++ +  + ++W  LL AC ++  +E+AE A++ ++++  +    +VLLS
Sbjct: 439 GKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLS 498

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           NLYA+  RW DV R+R+ MK R + K PG S+I + G  ++F + D+SH     IY+KL+
Sbjct: 499 NLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLE 558

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
            +  K+KE GY       LHD+ +E+KE  L YHSE+LA+ FGLIST E ++I V KNLR
Sbjct: 559 WLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLR 618

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +C DCH  IKLI+K+  R+IIVRD  RFH F DG CSC DYW
Sbjct: 619 VCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 120/242 (49%), Gaps = 3/242 (1%)

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV-FKPNEV 211
           Y   G +    ++F EM  R++ SW ++I GL Q   + EA+ LF++M   GV  KP   
Sbjct: 129 YCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSS 188

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T    + AC +  A  +G +IH ++ +     +  +  A+I  YA C  ++ +  VF   
Sbjct: 189 TYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHG- 247

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
           K   ++V W  +V  + ++     AL++F +M R GV P+  S+ +AL +C     +D G
Sbjct: 248 KLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWG 307

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             +  +    G++ ++    S++ +  R G L +   I K +S   ++V W +++  C  
Sbjct: 308 REIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQ 366

Query: 392 YG 393
           +G
Sbjct: 367 HG 368



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 93/213 (43%), Gaps = 16/213 (7%)

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           I  A+ VFD++   D+  +  +I G A+      A+ LF  M ++ V   N  +++    
Sbjct: 11  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWN--SMIKGCF 68

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
            C  L   ++       + +E  + +VV    +I+ + + G ++ A  +F  +  R  + 
Sbjct: 69  DCADLTMARK-------LFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR-DIA 120

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
            WN+M+  +  +G     L LF++M    V    +S+ + +   +  G  ++ + LF  M
Sbjct: 121 AWNSMIYGYCCNGRVEDGLRLFQEMPCRNV----ISWTSMIGGLDQHGRSEEALGLFRQM 176

Query: 339 ANCG--VKPNMKHYGSVVDLLGRAGRLQEACDI 369
             CG  VKP    Y  V+     A  L +   I
Sbjct: 177 MGCGVEVKPTSSTYCCVITACANASALYQGVQI 209


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/565 (36%), Positives = 336/565 (59%), Gaps = 42/565 (7%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
           H K+L  H    G F S LF V+   I  ++L  + +LA  H +F   +A     +N +L
Sbjct: 125 HGKELLNHAVKHG-FDSNLF-VQKAFIHMFSLCGIVDLA--HKVFDMGDACEVVTWNIML 180

Query: 81  RGLAHSSKPTNAVLWYR--QMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
            G        N V  ++  +ML              L AC+++    + L+   H+ ++ 
Sbjct: 181 SGY-------NRVKQFKISKML------------LVLSACSKL----KDLEWGKHIFKY- 216

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
                + G  +  ++A  GE+  A+ VFD M  RD+ SW A+I G  + N    A+ LF+
Sbjct: 217 -----INGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFR 271

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            M+M  V KP+E T++  L AC  LGA + G+ +   I +     +  V NA++DMY KC
Sbjct: 272 EMQMSNV-KPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKC 330

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G + KA +VF  +  +K   TW TM++  A++G G  AL +F  M  A V PD+++Y+  
Sbjct: 331 GNVRKAKKVFKEMY-QKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGV 389

Query: 319 LCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
           LCAC    +VD G   F +M    G+KP + HYG +VDLLG  G L+EA +++ ++ +  
Sbjct: 390 LCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKP 445

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437
           + ++W + LGAC+++ +V++A++A+++++E+   N   +VLL N+YAA ++W+++ +VRK
Sbjct: 446 NSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRK 505

Query: 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC 497
            M  R +KK PG S +E+ G +++F   D+SH + +EIY KL+ +M  + + GY+  TS 
Sbjct: 506 LMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSE 565

Query: 498 VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           V  D+GEE+KE AL  HSEKLA+A+ LIS+    +I++ KNLR+C DCH + KL+S+ YN
Sbjct: 566 VFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYN 625

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           RE+IV+D+ RFH F+ G+CSC ++W
Sbjct: 626 RELIVKDKTRFHHFRHGSCSCNNFW 650



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 183/402 (45%), Gaps = 37/402 (9%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LL+KC S        +KQ+ +H    G     LF  R+++I F        + YAH +F
Sbjct: 12  SLLEKCKS-----MYQLKQIHSHTIKMGLSSDPLF--RNRVIAFCCAHESGNMNYAHQVF 64

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
             I  PS   +N +++G +  S P N V  Y  ML  + + D  T  F+LK   R +AL 
Sbjct: 65  DTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQ 124

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              ++ +H ++HGF ++  +    + +++  G +  A KVFD     ++ +WN +++G  
Sbjct: 125 HGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYN 184

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           +       V  FK  KM           L  L+AC  L   + G  I +YI         
Sbjct: 185 R-------VKQFKISKM-----------LLVLSACSKLKDLEWGKHIFKYING------- 219

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
                V  M+A CG +D+A  VFDN+K R  +V+W  M+  +        AL LF +M  
Sbjct: 220 ---GIVEHMFAACGEMDEAQGVFDNMKTR-DVVSWTAMIDGYLRMNHFIGALALFREMQM 275

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           + VKPD+ + ++ L AC   G ++ G  +   +     K +     ++VD+  + G +++
Sbjct: 276 SNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRK 335

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
           A  + K +    D   W T++    + G  E A      ++E
Sbjct: 336 AKKVFKEMYQ-KDKFTWTTMIVGLAINGHGEEALAMFSNMIE 376


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/453 (39%), Positives = 284/453 (62%), Gaps = 5/453 (1%)

Query: 133 HVLR-HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLAS 191
           H +R  G + D +  +T++  Y + G +  A++VF E   +DI  W A++ G A+     
Sbjct: 245 HQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREE 304

Query: 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           +A+ LF  M +E + +P+  T+   +++C  L +   G  +H       L+ N++V +A+
Sbjct: 305 DALLLFNEMLLEHI-EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSAL 363

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           IDMY+KCG +D A  VF N+   +++V+WN M++  A +G    ALELFE M +   KPD
Sbjct: 364 IDMYSKCGFIDDARSVF-NLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPD 422

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           +V+++  L AC H   ++ G   F+S+ N  G+ P + HY  +V+LLGR GR+++A  ++
Sbjct: 423 NVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALI 482

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
           K+++   D ++W TLL  C   GD+  AE+A+R L E+       +++LSN+YA+  RW 
Sbjct: 483 KNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWK 542

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
           DV  VR  MK+++VKK  GFS+IE+   +H+F + D++H +  +IYEKL+ ++ K++E G
Sbjct: 543 DVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEG 602

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS-IQVFKNLRICRDCHDVI 549
           +   T+ VLHD+GE+EK  ++C+HSEKLA+AFGLI      S I++ KN+RIC DCH+ +
Sbjct: 603 FTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFM 662

Query: 550 KLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           K  S++  R+II+RD  RFH F  G CSC D W
Sbjct: 663 KFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 185/396 (46%), Gaps = 59/396 (14%)

Query: 97  RQMLRGS-----HRSDALTCSFA--LKACARVLALFETLQIHSHVLRHGFL-ADALLGTT 148
           + MLR S      RS A + ++   +  C R   + +  ++ SH+  H F   D+ L   
Sbjct: 4   KSMLRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQ 63

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL---------------------------- 180
           LL +YAK G++  A+ +FD+M  RDI SWNAL                            
Sbjct: 64  LLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSY 123

Query: 181 ---IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
              IAG +  +   E+++LFKRM+ EG F+P E T++  L A   L   + G +IH  I 
Sbjct: 124 NTTIAGFSGNSCPQESLELFKRMQREG-FEPTEYTIVSILNASAQLSDLRYGKQIHGSII 182

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
                 NV + NA+ DMYAKCG +++A  +FD +  +K+LV+WN M+  +A +G   + +
Sbjct: 183 VRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLT-KKNLVSWNLMISGYAKNGQPEKCI 241

Query: 298 ELFEQMGRAGVKPDDVSY---LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            L  QM  +G  PD V+    +AA C C   G VD+  R+F+       + ++  + +++
Sbjct: 242 GLLHQMRLSGHMPDQVTMSTIIAAYCQC---GRVDEARRVFSEFK----EKDIVCWTAMM 294

Query: 355 DLLGRAGRLQEACDIVKSV---SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
               + GR ++A  +   +    +  D     +++ +C     +   +    K +  G N
Sbjct: 295 VGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLN 354

Query: 412 NCGDFVLLSNLYAAYER---WDDVGRVRKAMKNRDV 444
           N  + ++ S L   Y +    DD   V   M  R+V
Sbjct: 355 N--NLLVSSALIDMYSKCGFIDDARSVFNLMPTRNV 388



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 144/331 (43%), Gaps = 38/331 (11%)

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           A F ++    +  +N  + G + +S P  ++  +++M R        T    L A A++ 
Sbjct: 110 ATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLS 169

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            L    QIH  ++   FL +  +   L D+YAK GEI  A+ +FD +  +++ SWN +I+
Sbjct: 170 DLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMIS 229

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G A+     + + L  +M++ G   P++VT+   +AA                       
Sbjct: 230 GYAKNGQPEKCIGLLHQMRLSG-HMPDQVTMSTIIAA----------------------- 265

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
                       Y +CG +D+A  VF   K  K +V W  M++ +A +G    AL LF +
Sbjct: 266 ------------YCQCGRVDEARRVFSEFK-EKDIVCWTAMMVGYAKNGREEDALLLFNE 312

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M    ++PD  +  + + +C     +  G  +       G+  N+    +++D+  + G 
Sbjct: 313 MLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGF 372

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + +A  +   +    ++V W  ++  C   G
Sbjct: 373 IDDARSVFNLMPT-RNVVSWNAMIVGCAQNG 402



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           + A++ G A + +  +A+L + +ML      D+ T S  + +CA++ +L     +H   +
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI 349

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             G   + L+ + L+D+Y+K G I  A+ VF+ M  R++ SWNA+I G AQ     +A++
Sbjct: 350 LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALE 409

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER---LDMNVVVCNAVI 252
           LF+ M ++  FKP+ VT +G L+AC H    ++G +  + I  +      ++   C  ++
Sbjct: 410 LFENM-LQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYAC--MV 466

Query: 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           ++  + G +++A  +  N+      + W+T++   +  GD
Sbjct: 467 NLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGD 506


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/528 (38%), Positives = 312/528 (59%), Gaps = 16/528 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAH-SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           A  +F+++   +   + A++ G      +  NAV    +ML  S   + LT S  LKACA
Sbjct: 306 ARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACA 365

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            +       QIH+ V++       ++G  L+ +YA+ G +  A+K FD++  R++ S ++
Sbjct: 366 NLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSS 425

Query: 180 LIAGLAQGNLA----SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
            I    + N +     E++D+       GV   +  T    L+A   +G   +G ++H  
Sbjct: 426 DIGETGRSNASWSSQIESMDV-------GV---STFTFASLLSAAATVGLPTKGQQLHAL 475

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
             +   + +  + N+++ MY++CG LD A   FD ++   ++++W +++ A A HG   R
Sbjct: 476 SIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAER 535

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVV 354
           AL LF  M  +GVKP+DV+Y+A L AC+H GLV +G   F SM  +  + P M+HY  +V
Sbjct: 536 ALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMV 595

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLL R+G +QEA + +  +    D ++W+TLLGAC+ Y ++E+ EIA+R ++++   +  
Sbjct: 596 DLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPA 655

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
            +VLLSNLYA    WD+V R+R  M++R++ K  G S++ VG  IH+F   D SH + +E
Sbjct: 656 PYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQE 715

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY KL  ++ +IK+ GY   TS VLHD+ ++ KE  L  HSEK+AVAFGLI+T     I+
Sbjct: 716 IYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKIAVAFGLITTLPTKPIR 775

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +FKNLR+C DCH  IK ISK   REII+RD  RFHR KDG CSC +YW
Sbjct: 776 IFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGKCSCGEYW 823



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 129/277 (46%), Gaps = 24/277 (8%)

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEM-GVRDIASWNALIAGLAQGNLASEAVDLFKR 199
           ADAL+  +LL +Y+K G + +A++VFD M G+RD+ SW A+   L +     EA+ L   
Sbjct: 77  ADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGE 136

Query: 200 MKMEGVFKPNEVTVLGALAAC--GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
           M +E   +PN  T+  A  AC  G L     G  +   I+      +V V  A+IDM+A+
Sbjct: 137 M-LESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFAR 195

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
            G L  A +VF+ +   +++V W  M+  +   G   +A+ELF  M   G +PD  +  +
Sbjct: 196 NGDLVAARKVFNGL-VERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSS 254

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            + AC   G    G +L +                   L+ R G + + C     V M T
Sbjct: 255 MVSACAEQGSAGLGQQLHS-------------------LVLRLGLVSDTCVSCGLVDMYT 295

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
            + + Q++  A +++  +    + S   +  G   CG
Sbjct: 296 KLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCG 332



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 142/296 (47%), Gaps = 20/296 (6%)

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL--QIHSHVLRHGFL 140
           L  +     A++   +ML    R +A T   A  AC     LF +    +    ++ GF 
Sbjct: 121 LTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPG-ELFRSSGGTVLGFAIKTGFW 179

Query: 141 A-DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
             D  +G  L+D++A+ G++V+A+KVF+ +  R +  W  +I    QG  A +AV+LF  
Sbjct: 180 GTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLG 239

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M  +G F+P+  T+   ++AC   G+   G ++H  +    L  +  V   ++DMY K  
Sbjct: 240 MLEDG-FEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQ 298

Query: 260 L---LDKAFEVFDNIKCRKSLVTWNTMVMAFA-VHGDGPRALELFEQMGRAGVKPDDVSY 315
           +   ++ A +VF  +    ++++W  ++  +    G    A+EL  +M    ++P+ ++Y
Sbjct: 299 MEQSMECARKVFKRMPTH-NVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTY 357

Query: 316 LAALCACNHAGLVDDGVRLF-----NSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
            + L AC +    D G ++       S+ N  V  N     ++V +   +G ++EA
Sbjct: 358 SSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGN-----ALVSMYAESGCMEEA 408



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           E LD + +V N+++ MY+KCG +  A  VFD ++  + LV+W  M      +G    AL 
Sbjct: 73  EVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALV 132

Query: 299 LFEQMGRAGVKPDDVSYLAALCAC 322
           L  +M  +G++P+  +  AA  AC
Sbjct: 133 LLGEMLESGLRPNAFTLCAAAHAC 156


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/554 (39%), Positives = 327/554 (59%), Gaps = 9/554 (1%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F+S  F + +++I+ YA   L EL  A  +F +    S   +NA+L+ LA +     A+ 
Sbjct: 110 FRSDPF-LSTRLIDAYA--SLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALA 166

Query: 95  WYRQMLRGSHRSDALTCSFALKAC-----ARVLALFETLQIHSHVLRHGFLADALLGTTL 149
               M R     D+ + +  LKAC     + V A     +IH+H +R G+     + TTL
Sbjct: 167 RLADMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTL 226

Query: 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM-KMEGVFKP 208
           +D YAK+G +  A+ VF  M  R++ SW A+I   A+     +A+ LF+ M   +    P
Sbjct: 227 IDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVP 286

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           N VT++  L A   + A  +G  +H YI     D  V V NA++ MY KCG L+    +F
Sbjct: 287 NSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIF 346

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
           D I  RK +V+WNT++  + +HG G  A+++FE M + GV P+ +++++ L AC+HAGLV
Sbjct: 347 DLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLV 406

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           D+G RLF SM +  V P  +HY  +VDLLGRAG L EA ++++ + +     +W +LLGA
Sbjct: 407 DEGKRLFESMVDYNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGA 466

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448
           C+++  VE AE+A  +L ++   N G++VLL+++YA  +   +VG ++  ++   ++KVP
Sbjct: 467 CRIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHALEKVP 526

Query: 449 GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKE 508
           G S+IEV   +H F + D  + +  E+   + E + ++K  GY   T  VL+DI EEEKE
Sbjct: 527 GCSWIEVKKRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVLYDIEEEEKE 586

Query: 509 NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
             L  HSEKLAVAFGLI+T     I++ KNLR+C DCH V K ISK   REIIVRD  RF
Sbjct: 587 KILLGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAEREIIVRDVNRF 646

Query: 569 HRFKDGACSCKDYW 582
           H F+DG CSC DYW
Sbjct: 647 HHFRDGICSCGDYW 660


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/464 (38%), Positives = 287/464 (61%), Gaps = 6/464 (1%)

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD---IASWNA 179
           A+ E  ++HS ++  G+ ++  +GT ++ +YA  G I  A   F    + D   + SWNA
Sbjct: 442 AMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNA 501

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I+ L+Q      A+  F+RM + GV  PN++T +  L AC    A  EG  +H+++R  
Sbjct: 502 IISSLSQHGHGKRALGFFRRMDLHGV-APNQITCVAVLDACAGAAALTEGVIVHDHLRHS 560

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            ++ NV V  A+  MY +CG L+ A E+F+ +   + +V +N M+ A++ +G    AL+L
Sbjct: 561 GMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKL 620

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLG 358
           F +M + G +PD+ S+++ L AC+H GL D+G  +F SM    G+ P+  HY   VD+LG
Sbjct: 621 FWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLG 680

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG L +A ++++ + +   +++W+TLLGAC+ Y DV+   +A+  + E+   +   +V+
Sbjct: 681 RAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVV 740

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+ A   +WD+   VR  M++R ++K  G S+IE+   +H+F   D+SH +  EIY +
Sbjct: 741 LSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRE 800

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+ +  +I+E GY   T  VL  + E EKE  LC HSE+LA+A G++S+S  T ++V KN
Sbjct: 801 LERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKN 859

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH+  K ISK+ N+EI+VRD  RFH F DG+CSC DYW
Sbjct: 860 LRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 166/339 (48%), Gaps = 19/339 (5%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++       +  ++       +   A+  + +M +   R DA+T    LKACAR+  
Sbjct: 84  VFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGD 143

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L +   IH+ ++  G    ++L   LL +Y   G + SA  +F+ M  RD+ SWNA IA 
Sbjct: 144 LSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAA 202

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            AQ      A++LF+RM++EGV +P  +T++  L+ C  +   ++   IH  +RE  L+ 
Sbjct: 203 NAQSGDLDMALELFQRMQLEGV-RPARITLVITLSVCAKI---RQARAIHSIVRESGLEQ 258

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            +VV  A+   YA+ G LD+A EVFD     + +V+WN M+ A+A HG    A  LF +M
Sbjct: 259 TLVVSTALASAYARLGHLDQAKEVFDR-AAERDVVSWNAMLGAYAQHGHMSEAALLFARM 317

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKH----YGSVVDLLGR 359
              G+ P  V+ + A   C+        +R    +  C ++  +        +++D+  R
Sbjct: 318 LHEGIPPSKVTLVNASTGCS-------SLRFGRMIHACALEKGLDRDIVLGNALLDMYTR 370

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            G  +EA  + + +    + V W T++      G ++ A
Sbjct: 371 CGSPEEARHLFEGIP--GNAVSWNTMIAGSSQKGQMKRA 407



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/324 (30%), Positives = 160/324 (49%), Gaps = 15/324 (4%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA +   A S     A+  +++M     R   +T    L  CA++    +   IHS V 
Sbjct: 196 WNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIR---QARAIHSIVR 252

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             G     ++ T L   YA++G +  AK+VFD    RD+ SWNA++   AQ    SEA  
Sbjct: 253 ESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAAL 312

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF RM  EG+  P++VT++ A   C  L   + G  IH    E+ LD ++V+ NA++DMY
Sbjct: 313 LFARMLHEGI-PPSKVTLVNASTGCSSL---RFGRMIHACALEKGLDRDIVLGNALLDMY 368

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            +CG  ++A  +F+ I    + V+WNTM+   +  G   RALELF++M   G+ P   +Y
Sbjct: 369 TRCGSPEEARHLFEGIP--GNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATY 426

Query: 316 LAALCAC----NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
           L  L A       A  + +G +L + + +CG         +VV +    G + EA    +
Sbjct: 427 LNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQ 486

Query: 372 SVSMGT--DMVLWQTLLGACQLYG 393
             +M    D+V W  ++ +   +G
Sbjct: 487 RGAMEDRHDVVSWNAIISSLSQHG 510



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 141/286 (49%), Gaps = 9/286 (3%)

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L +  +IH+ ++  G   +  LG  LL +Y K   +   ++VF  + VRD ASW  +I  
Sbjct: 45  LSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             +   A  A+ +F RM+ EGV + + VT L  L AC  LG   +G  IH +I E  L+ 
Sbjct: 103 YTEHGQAKRAIWMFHRMQQEGV-RCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEG 161

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
             V+ N ++ +Y  CG +  A  +F+ ++  + LV+WN  + A A  GD   ALELF++M
Sbjct: 162 KSVLANLLLHIYGSCGCVASAMLLFERME--RDLVSWNAAIAANAQSGDLDMALELFQRM 219

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
              GV+P  ++ +  L  C     +     + + +   G++  +    ++     R G L
Sbjct: 220 QLEGVRPARITLVITLSVCAK---IRQARAIHSIVRESGLEQTLVVSTALASAYARLGHL 276

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            +A ++    +   D+V W  +LGA   +G +  A +   +++  G
Sbjct: 277 DQAKEVFDRAAE-RDVVSWNAMLGAYAQHGHMSEAALLFARMLHEG 321



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 135/273 (49%), Gaps = 8/273 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++  L+       A+ ++R+M       + +TC   L ACA   AL E + +H H+ 
Sbjct: 499 WNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLR 558

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-RDIASWNALIAGLAQGNLASEAV 194
             G  ++  + T L  +Y + G + SA+++F+++ V RD+  +NA+IA  +Q  LA EA+
Sbjct: 559 HSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEAL 618

Query: 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE---RLDMNVVVCNAV 251
            LF RM+ EG  +P+E + +  L+AC H G   EG +I   +R+        +   C   
Sbjct: 619 KLFWRMQQEGS-RPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYAC--A 675

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           +D+  + G L  A E+   +  + +++ W T++ A   + D  R   L   M R     D
Sbjct: 676 VDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRG-RLANSMVRELDPGD 734

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
           + +Y+        AG  D+   +   M + G++
Sbjct: 735 ESAYVVLSNILAGAGKWDEAAEVRTEMESRGLR 767


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/600 (34%), Positives = 324/600 (54%), Gaps = 77/600 (12%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           + +++ +A   ++   + H++   IN  S      + R +  S+   + +LW   M+R  
Sbjct: 66  NPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILW-NSMIRAY 124

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
            RS     +  +  C               V + G   D  +G  L+D+Y+K+G++  A+
Sbjct: 125 TRSKQYNEALEMYYCM--------------VEKGGLERDVFIGAGLVDMYSKMGDLKRAR 170

Query: 164 KVFDEMGVRDIASWNALIAGLAQ----------------------GNLAS---------E 192
           +VFD+M  RD+ +WNA+IAGL+Q                      G + +         E
Sbjct: 171 EVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVE 230

Query: 193 AVDLFKRMKMEGV-----------------------------FKPNEVTVLGALAACGHL 223
            ++LF +MK+  V                             F PN VT +  L A  +L
Sbjct: 231 VLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYL 290

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
            A++EG   H  I +     N +V N++IDMYAKCG LD + ++F+ +   K  V+WN M
Sbjct: 291 AAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMD-HKDTVSWNAM 349

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CG 342
           +  +AVHG G RA+ LF  M  + V+ D VS+++ L AC HAGLV++G ++F+SM++   
Sbjct: 350 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYH 409

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           +KP+++HY  +VDLLGRAG   E    +K + +  D  +W  LLG+C+++ +V++ E+A 
Sbjct: 410 IKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVAL 469

Query: 403 RKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKF 462
             LV++   N   FV+LS++YA   RW D G+ R  M +  +KK PG S++E+   +H F
Sbjct: 470 DHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAF 529

Query: 463 FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
              DKSH +   ++   + ++ K+++ GY    SCVL ++ EE+KE  L  HSE+LA+ F
Sbjct: 530 RVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITF 589

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            L++T   ++IQ+ KNLR+C DCH   K ISK+  R IIVRD  RFH F+DG CSC DYW
Sbjct: 590 ALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/560 (35%), Positives = 322/560 (57%), Gaps = 6/560 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+       G F S +F V++ ++  YA     +++YA  +F +++  +   + +++ G
Sbjct: 120 KQIHGQTFKYG-FGSNVF-VQNSLVSMYA--KFGQISYARIVFDKLHDRTVVSWTSIISG 175

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              +  P  A+  +++M + + + D +     + A   V  L +   IH  V + G   +
Sbjct: 176 YVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFE 235

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +  +L  +YAK G +  A+  F+ M   ++  WNA+I+G A      EA+ LF+ M  
Sbjct: 236 PDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMIT 295

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           + + + + +T+  A+ A   +G+ +    +  YI +     +  V   +IDMYAKCG + 
Sbjct: 296 KNI-RVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIY 354

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VFD +   K +V W+ M+M + +HG G  A+ L+ +M +AGV P+D +++  L AC
Sbjct: 355 LARCVFDRV-ADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTAC 413

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
            ++GLV +G  LF+ M + G++P+ +HY  VVDLLGRAG L +A D + S+ +   + +W
Sbjct: 414 KNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVW 473

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
             LL AC+++  V + EIA+ +L  +   N G +V LSNLYA+   W  V  VR  M  +
Sbjct: 474 GALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQK 533

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            + K  G S IE+ G +  F   D+SH K +EI+E+LD +  ++K  GY      VLHD+
Sbjct: 534 GLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDL 593

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
             EE E  LC+HSE+LAVA+G+IST+  T++++ KNLR C +CH  IKLISK+ +REII+
Sbjct: 594 NHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIII 653

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFH FKDG CSC D+W
Sbjct: 654 RDAKRFHHFKDGVCSCGDFW 673



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 193/401 (48%), Gaps = 10/401 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFY-ALSPLNELAYAHALFRQINAPSTNDFNAV 79
           H+ Q+   L  +G     L   R  +I+F  A     ++ YAH  FR+++ P    +NA+
Sbjct: 17  HLDQVYVQLIVSG-----LHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAI 71

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           ++G    +     +  Y  M       +  T  + LKAC          QIH    ++GF
Sbjct: 72  IKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGF 131

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
            ++  +  +L+ +YAK G+I  A+ VFD++  R + SW ++I+G  Q     EA+++FK 
Sbjct: 132 GSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKE 191

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+   V KP+ + ++  + A  ++    +G  IH  + +  L+    +  ++  MYAK G
Sbjct: 192 MRQCNV-KPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRG 250

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
           L++ A   F+ ++ + +L+ WN M+  +A +G G  A++LF +M    ++ D ++  +A+
Sbjct: 251 LVEVARFFFNRME-KPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAV 309

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            A    G ++    L   ++    + +      ++D+  + G +  A  +   V+   D+
Sbjct: 310 LASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVA-DKDV 368

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMG-SNNCGDFVLL 419
           VLW  ++    L+G  + A     ++ + G   N G F+ L
Sbjct: 369 VLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGL 409


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/560 (35%), Positives = 322/560 (57%), Gaps = 6/560 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+       G F S +F V++ ++  YA     +++YA  +F +++  +   + +++ G
Sbjct: 105 KQIHGQTFKYG-FGSNVF-VQNSLVSMYA--KFGQISYARIVFDKLHDRTVVSWTSIISG 160

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              +  P  A+  +++M + + + D +     + A   V  L +   IH  V + G   +
Sbjct: 161 YVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFE 220

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +  +L  +YAK G +  A+  F+ M   ++  WNA+I+G A      EA+ LF+ M  
Sbjct: 221 PDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMIT 280

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           + + + + +T+  A+ A   +G+ +    +  YI +     +  V   +IDMYAKCG + 
Sbjct: 281 KNI-RVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIY 339

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VFD +   K +V W+ M+M + +HG G  A+ L+ +M +AGV P+D +++  L AC
Sbjct: 340 LARCVFDRV-ADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTAC 398

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
            ++GLV +G  LF+ M + G++P+ +HY  VVDLLGRAG L +A D + S+ +   + +W
Sbjct: 399 KNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVW 458

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
             LL AC+++  V + EIA+ +L  +   N G +V LSNLYA+   W  V  VR  M  +
Sbjct: 459 GALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQK 518

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            + K  G S IE+ G +  F   D+SH K +EI+E+LD +  ++K  GY      VLHD+
Sbjct: 519 GLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDL 578

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
             EE E  LC+HSE+LAVA+G+IST+  T++++ KNLR C +CH  IKLISK+ +REII+
Sbjct: 579 NHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIII 638

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFH FKDG CSC D+W
Sbjct: 639 RDAKRFHHFKDGVCSCGDFW 658



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 193/401 (48%), Gaps = 10/401 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFY-ALSPLNELAYAHALFRQINAPSTNDFNAV 79
           H+ Q+   L  +G     L   R  +I+F  A     ++ YAH  FR+++ P    +NA+
Sbjct: 2   HLDQVYVQLIVSG-----LHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAI 56

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           ++G    +     +  Y  M       +  T  + LKAC          QIH    ++GF
Sbjct: 57  IKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGF 116

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
            ++  +  +L+ +YAK G+I  A+ VFD++  R + SW ++I+G  Q     EA+++FK 
Sbjct: 117 GSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKE 176

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+   V KP+ + ++  + A  ++    +G  IH  + +  L+    +  ++  MYAK G
Sbjct: 177 MRQCNV-KPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRG 235

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
           L++ A   F+ ++ + +L+ WN M+  +A +G G  A++LF +M    ++ D ++  +A+
Sbjct: 236 LVEVARFFFNRME-KPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAV 294

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            A    G ++    L   ++    + +      ++D+  + G +  A  +   V+   D+
Sbjct: 295 LASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVA-DKDV 353

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMG-SNNCGDFVLL 419
           VLW  ++    L+G  + A     ++ + G   N G F+ L
Sbjct: 354 VLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGL 394


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/440 (44%), Positives = 288/440 (65%), Gaps = 9/440 (2%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           T+++    + G++ +A+++F+EM VRD+ SWNA+++GLA      EA+ LF+RM  EG F
Sbjct: 110 TSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEG-F 168

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD--MNVVVCNAVIDMYAKCGLLDKA 264
            PN  TVL ALAAC   GA + G  IH ++  +RL    +  +  A++DMYAKCG ++ A
Sbjct: 169 APNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELA 228

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG-RAGVKPDDVSYLAALCACN 323
            +VF  ++ R +  TWN M+   A++G   +AL++F +M     V PD+V+++  L AC+
Sbjct: 229 LDVFTKLRSRNT-CTWNAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACS 287

Query: 324 HAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           H G VD G   F+ +    G++  ++HY  +VDLL R+G LQEA  I+  + M  D V+W
Sbjct: 288 HGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVW 347

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
           + LLG C+L+ DV+MAE A   + EM +   GD VLLSNLYAA  RW  V  VR+ M+++
Sbjct: 348 RALLGGCRLHKDVKMAETA---ISEMEATCSGDHVLLSNLYAAVGRWSGVEDVRRTMRSK 404

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            ++K+PG S IE+   IH+F + DKSH  + +I+ KL EI  ++++ GY   T+ V +D+
Sbjct: 405 GIEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKLAEISARMQQQGYVTETAEVFYDV 464

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            EEEKE AL +HSEKLA+AFGLI      +I++ KNLR C DCH   KL+S++Y+ EI+V
Sbjct: 465 EEEEKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNLRFCADCHKFAKLVSQIYHWEIVV 524

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RDR RFH F +GACSC D+W
Sbjct: 525 RDRARFHHFTEGACSCNDFW 544



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 130/240 (54%), Gaps = 5/240 (2%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           ++A A  LF ++       +NA++ GLA + +P  A+  +R+M+      +  T   AL 
Sbjct: 121 DVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLSALA 180

Query: 117 ACARVLALFETLQIHSHVLRHGFLA--DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           ACA   AL     IH+ V R       D  LGT LLD+YAK G +  A  VF ++  R+ 
Sbjct: 181 ACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTKLRSRNT 240

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            +WNA+I GLA    +++A+D+F++M+++    P+EVT +G L AC H G + +  + H 
Sbjct: 241 CTWNAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACSH-GGFVDVGREHF 299

Query: 235 YIREERLDMNVVVCN--AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           ++ E++  + +++ +   ++D+ A+ G L +A ++   +  +   V W  ++    +H D
Sbjct: 300 HMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLHKD 359



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V NA+I  YA  GL+D A  VFD +  R + V++N+M+ A A+ GD   A  LFE++   
Sbjct: 46  VHNALIQAYAASGLVDDARRVFDGMSHRDT-VSFNSMIHAHAMSGDVVSARRLFERVP-- 102

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
              P  V++ + +     AG V    RLF  M
Sbjct: 103 --SPTPVTWTSMVAGLCRAGDVAAARRLFEEM 132


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/580 (36%), Positives = 330/580 (56%), Gaps = 42/580 (7%)

Query: 39  LFPVRSKIIEFYAL----SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           + P R+ II + ++    + + +L  A   F ++   S   +NA+    A    P  A+ 
Sbjct: 186 MMPARN-IITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALN 244

Query: 95  WYRQMLRGSHRSDALTCSFALKACARV-------------------------------LA 123
            + QML      D  T    + +C+ +                                A
Sbjct: 245 LFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHA 304

Query: 124 LFETLQIHSHVLRH-GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            F  L+I  ++    G   +A+    ++  Y +VG++  A+++FD M  RD+ SWN++IA
Sbjct: 305 KFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIA 364

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G AQ   ++ +++LFK M      +P+EVT+   L+ACGH+GA K    + + +RE+ + 
Sbjct: 365 GYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIK 424

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
           + +   N++I MY+KCG +  A  +F  +  R  +V++NT++  FA +G G  A++L   
Sbjct: 425 LGISGFNSLIFMYSKCGSVADAHRIFQTMGTR-DVVSFNTLISGFAANGHGKEAIKLVLT 483

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M   G++PD V+Y+  L AC+HAGL+++G  +F S+      P + HY  +VDLLGRAG 
Sbjct: 484 MEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ----APTVDHYACMVDLLGRAGE 539

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L EA  +++S+ M     ++ +LL A +++  V + E+A+ KL E+   N G++VLLSN+
Sbjct: 540 LDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNI 599

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YA++ RW+DV RVR+ MK   +KK  G S++E  G +HKF   D+SH + ++IY+ L E+
Sbjct: 600 YASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAEL 659

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
             K+K  G+ A  SC L D+ EEEKE  L  HSEKLA+ F L+ +   T+I+V KNLRIC
Sbjct: 660 ERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRIC 719

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH  IK+ISK+  REI+VRD  RFH F +G CSC DYW
Sbjct: 720 LDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 58/346 (16%)

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
           AY  ++F    +P  + ++ +L+  +        V  ++     + R       + +K  
Sbjct: 51  AYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLA 110

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
            +   +F     H++VL+ G + D  +   +LD+YAK G++  A+ +F++M  R +A WN
Sbjct: 111 GKSGNMF-----HAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWN 165

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ++I+G  +    +EAV LF  M                                      
Sbjct: 166 SMISGCWKSGNETEAVVLFNMMPAR----------------------------------- 190

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
                N++   +++  YAK G L+ A   FD +  R S+V+WN M  A+A       AL 
Sbjct: 191 -----NIITWTSMVTGYAKMGDLESARRYFDEMPER-SVVSWNAMQSAYAQKECPKEALN 244

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAG---LVDDGVRLFNS---MANCGVKPNMKHYGS 352
           LF QM   G+ PDD +++  + +C+  G   L D  +R+ +    + N  VK       +
Sbjct: 245 LFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKT------A 298

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           ++D+  + G L+ A +I   +    + V W  ++ A    G + +A
Sbjct: 299 LLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLA 344


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/524 (35%), Positives = 312/524 (59%), Gaps = 3/524 (0%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           +A  +F ++ + S   +N ++  L  + +   A+    QM R        T S  L ACA
Sbjct: 117 FARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACA 176

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
              AL E   +H+  ++     +  + T LLDVYAK G +  A  VF+ M  R + +W++
Sbjct: 177 AKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSS 236

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           + AG  Q  +  +A+ LF++    G+ K ++  +   + AC  L A  EG +++  + + 
Sbjct: 237 MAAGYVQNEMYEQALALFRKAWETGL-KHDQFLMSSVICACAGLAAMIEGKQVNALLSKS 295

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
               N+ V +++IDMYAKCG ++++++VF +++ ++++V WN M+   + H      + L
Sbjct: 296 GFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHARSLEVMIL 354

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLG 358
           FE+M + G+ P+DV++++ L AC H GLV  G + F+ M     + PN+ HY  +VD L 
Sbjct: 355 FEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLS 414

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG++ EA D++  +       +W +LL +C+ +G++E+AE+A++KL ++  +N G+++L
Sbjct: 415 RAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLL 474

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YAA  +WD+V ++RK +K  DVKK  G S+IE+   +H F   +++H K  EIY K
Sbjct: 475 LSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSK 534

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+E+M ++++ GY   T   LH +GE  K+  L +HSEKLA   GL+       I++ KN
Sbjct: 535 LNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKN 594

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRIC DCH  +KL SK + R++IVRD  RFH FK+G CSC D+W
Sbjct: 595 LRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 174/374 (46%), Gaps = 35/374 (9%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           P+T DFNA      H                             LK CA+   L +    
Sbjct: 54  PTTKDFNATHVSFVHE---------------------------ILKLCAKRKLLLQGKAC 86

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H+ +L  G   D L    L+++Y+K G +  A++VFDEM  R + SWN +I  L Q    
Sbjct: 87  HAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEE 146

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
           +EA+DL  +M+ EG    +E T+   L AC    A  E   +H +  +  +D+NV V  A
Sbjct: 147 NEALDLLLQMQREGT-PFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATA 205

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           ++D+YAKCGL+  A  VF+++  R S+VTW++M   +  +    +AL LF +    G+K 
Sbjct: 206 LLDVYAKCGLMKDAVCVFESMPDR-SVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKH 264

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           D     + +CAC     + +G ++   ++  G   N+    S++D+  + G ++E+  + 
Sbjct: 265 DQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVF 324

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
           + V    ++VLW  ++     +       I   K+ +MG +   D   +S L A      
Sbjct: 325 RDVE-KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSP-NDVTFVSVLSAC----G 378

Query: 431 DVGRVRKAMKNRDV 444
            +G V+K  K  D+
Sbjct: 379 HMGLVKKGQKYFDL 392


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/580 (36%), Positives = 330/580 (56%), Gaps = 42/580 (7%)

Query: 39  LFPVRSKIIEFYAL----SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           + P R+ II + ++    + + +L  A   F ++   S   +NA+    A    P  A+ 
Sbjct: 186 MMPARN-IITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALN 244

Query: 95  WYRQMLRGSHRSDALTCSFALKACARV-------------------------------LA 123
            + QML      D  T    + +C+ +                                A
Sbjct: 245 LFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHA 304

Query: 124 LFETLQIHSHVLRH-GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
            F  L+I  ++    G   +A+    ++  Y +VG++  A+++FD M  RD+ SWN++IA
Sbjct: 305 KFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIA 364

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G AQ   ++ +++LFK M      +P+EVT+   L+ACGH+GA K    + + +RE+ + 
Sbjct: 365 GYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIK 424

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
           + +   N++I MY+KCG +  A  +F  +  R  +V++NT++  FA +G G  A++L   
Sbjct: 425 LGISGFNSLIFMYSKCGSVADAHRIFQTMGTR-DVVSFNTLISGFAANGHGKEAIKLVLT 483

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M   G++PD V+Y+  L AC+HAGL+++G  +F S+      P + HY  +VDLLGRAG 
Sbjct: 484 MEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ----APTVDHYACMVDLLGRAGE 539

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L EA  +++S+ M     ++ +LL A +++  V + E+A+ KL E+   N G++VLLSN+
Sbjct: 540 LDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNI 599

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YA++ RW+DV RVR+ MK   +KK  G S++E  G +HKF   D+SH + ++IY+ L E+
Sbjct: 600 YASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAEL 659

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
             K+K  G+ A  SC L D+ EEEKE  L  HSEKLA+ F L+ +   T+I+V KNLRIC
Sbjct: 660 ERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRIC 719

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH  IK+ISK+  REI+VRD  RFH F +G CSC DYW
Sbjct: 720 LDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 149/346 (43%), Gaps = 58/346 (16%)

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
           AY  ++F    +P  + ++ +L+  +        V  ++     + R       + +K  
Sbjct: 51  AYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLA 110

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
            +   LF     H++VL+ G + D  +   +LD+YAK G++  A+ +F++M  R +A WN
Sbjct: 111 GKSGNLF-----HAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWN 165

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ++I+G  +    +EAV LF  M                                      
Sbjct: 166 SMISGCWKSGNETEAVVLFNMMPAR----------------------------------- 190

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
                N++   +++  YAK G L+ A   FD +  R S+V+WN M  A+A       AL 
Sbjct: 191 -----NIITWTSMVTGYAKMGDLESARRYFDEMPER-SVVSWNAMQSAYAQKECPKEALN 244

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAG---LVDDGVRLFNS---MANCGVKPNMKHYGS 352
           LF QM   G+ PDD +++  + +C+  G   L D  +R+ +    + N  VK       +
Sbjct: 245 LFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKT------A 298

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           ++D+  + G L+ A +I   +    + V W  ++ A    G + +A
Sbjct: 299 LLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLA 344


>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Glycine max]
          Length = 569

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/454 (40%), Positives = 285/454 (62%), Gaps = 8/454 (1%)

Query: 132 SHVLRHGF--LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
            H+  H F  + D      +++   K G+   AKKVF +M VRD+ +WN++I G  +   
Sbjct: 121 PHIALHVFSRILDLFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLR 180

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             +A+ +F+RM +    +P+  T    + AC  LGA      +H  + E+R+++N ++  
Sbjct: 181 FFDALSIFRRM-LSAKVEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYILSA 239

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           A+IDMYAKCG +D + +VF+ +  R  +  WN M+   A+HG    A  +F +M    V 
Sbjct: 240 ALIDMYAKCGRIDVSRQVFEEV-ARDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVL 298

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           PD ++++  L AC+H GLV++G + F  M N   ++P ++HYG++VDLLGRAG ++EA  
Sbjct: 299 PDSITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYA 358

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428
           ++K + M  D+V+W+ LL AC+++   E+ E+A   +  + S   GDFVLLSN+Y +   
Sbjct: 359 VIKEMRMEPDIVIWRALLSACRIHRKKELGEVAIANISRLES---GDFVLLSNMYCSLNN 415

Query: 429 WDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKE 488
           WD   RVR+ MK R V+K  G S++E+G  IH+F  + +SH + + IY  L+ ++ + K 
Sbjct: 416 WDGAERVRRMMKTRGVRKSRGKSWVELGDGIHQFNAAYQSHPEMKSIYRVLEGLIQRAKL 475

Query: 489 YGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDV 548
            G+   T  VL D+ EEEKE  L +HSEKLA+A+ ++ TS  T I++ KNLRIC DCH+ 
Sbjct: 476 EGFTPLTDLVLMDVSEEEKEENLMFHSEKLAMAYAVLKTSPGTKIRISKNLRICLDCHNW 535

Query: 549 IKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IK++SK+ NR+IIVRDR+RFH+F+ G CSCKDYW
Sbjct: 536 IKIVSKILNRKIIVRDRIRFHQFEGGVCSCKDYW 569



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 122/231 (52%), Gaps = 2/231 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F +++      +N+++ G   + +  +A+  +R+ML      D  T +  + ACAR
Sbjct: 153 AKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTFASVVTACAR 212

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL     +H  ++      + +L   L+D+YAK G I  +++VF+E+    ++ WNA+
Sbjct: 213 LGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAM 272

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE- 239
           I+GLA   LA +A  +F RM+ME V  P+ +T +G L AC H G  +EG K    ++   
Sbjct: 273 ISGLAIHGLAMDATLVFSRMEMEHVL-PDSITFIGILTACSHCGLVEEGRKYFGMMQNRF 331

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +   +     ++D+  + GL+++A+ V   ++    +V W  ++ A  +H
Sbjct: 332 MIQPQLEHYGTMVDLLGRAGLMEEAYAVIKEMRMEPDIVIWRALLSACRIH 382


>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
          Length = 584

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/517 (39%), Positives = 323/517 (62%), Gaps = 7/517 (1%)

Query: 71  PSTNDF--NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL 128
           P+ + F  +++ R  AH   P  A+ +Y ++L  +    +   + A KACA + AL   +
Sbjct: 70  PACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGM 129

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
            +H+H +  GF +D  + T L+ +Y+K G++  A+K+FD +  R + +WNA+I+G  Q  
Sbjct: 130 AVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNG 189

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
           LA  A+++++ M++  V  P+  T +  L+AC   GA   G ++   I  +++D++V + 
Sbjct: 190 LAERAIEVYREMQVAQVV-PDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLG 248

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           +A+++MYA+CGL+ KA + FD ++ R ++VTW +M+  + +HG G  A++LF  M   G 
Sbjct: 249 SALVNMYARCGLVSKARDWFDRLQER-NVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGP 307

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEAC 367
            P+DV+++A L AC HAGLV++G   F+SM    G+ P  +HY S+VD+ GRAG L +A 
Sbjct: 308 TPNDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAM 367

Query: 368 DIVK-SVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426
             ++ S+       +W  +LGAC+++ +  +    + +L+ +   N    VLLSN+YA  
Sbjct: 368 QFIRDSIPGEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALS 427

Query: 427 ERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKI 486
            + + V +VR  M  R +KK  G+S IE+GG  H F   +KSH + REIY+ L+E++ +I
Sbjct: 428 GKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYQYLEELIHRI 487

Query: 487 KEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGL-ISTSEATSIQVFKNLRICRDC 545
            + GY   T  VLH++ EEE+E AL YHSEKLAVA+GL +S+   T I+V KNLRIC DC
Sbjct: 488 SDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTTPIRVIKNLRICGDC 547

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H  IK +S V +REIIVRD+ RFH FKDG CSC +YW
Sbjct: 548 HLAIKFMSSVESREIIVRDKHRFHHFKDGKCSCLEYW 584


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/543 (36%), Positives = 310/543 (57%), Gaps = 42/543 (7%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G  +      A+   R+M+      D  T    ++ACA    L    Q+H++VL
Sbjct: 254 YNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVL 313

Query: 136 RH---GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL------------ 180
           R     F  D     +L+ +Y K G+   A+ +F++M  +D+ SWNAL            
Sbjct: 314 RREDFSFHFD----NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGE 369

Query: 181 -------------------IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
                              I+GLA+     E + LF  MK EG F+P +    GA+ +C 
Sbjct: 370 AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREG-FEPCDYAFSGAIKSCA 428

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            LGA+  G + H  + +   D ++   NA+I MYAKCG++++A +VF  + C  S V+WN
Sbjct: 429 VLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDS-VSWN 487

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            ++ A   HG G  A++++E+M + G++PD +++L  L AC+HAGLVD G + FNSM   
Sbjct: 488 ALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETV 547

Query: 342 -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + P   HY  ++DLL R+G+  EA  I++S+       +W+ LL  C+++G++E+  I
Sbjct: 548 YRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGII 607

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A+ KL  +   + G ++LLSN+YAA  +W++V RVRK M++R VKK    S+IE+   +H
Sbjct: 608 AADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVH 667

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE-EKENALCYHSEKLA 519
            F   D SH +   +Y+ L ++  +++  GY   TS VLHD+  +  KE+ L  HSEK+A
Sbjct: 668 TFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIA 727

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           VAFGL+     T+I++FKNLR C DCH+  + +SKV  R+II+RDR RFH F++G CSC 
Sbjct: 728 VAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCG 787

Query: 580 DYW 582
           ++W
Sbjct: 788 NFW 790



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 2/233 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F+++   +   +  ++ GLA +      +  +  M R          S A+K+CA 
Sbjct: 370 AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAV 429

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + A     Q H+ +++ GF +    G  L+ +YAK G +  A++VF  M   D  SWNAL
Sbjct: 430 LGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNAL 489

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE-E 239
           IA L Q     EAVD+++ M  +G+ +P+ +T L  L AC H G   +G K    +    
Sbjct: 490 IAALGQHGHGVEAVDVYEEMLKKGI-RPDRITFLTVLTACSHAGLVDQGRKYFNSMETVY 548

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           R+         +ID+  + G   +A  + +++  + +   W  ++    VHG+
Sbjct: 549 RIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGN 601



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 139/321 (43%), Gaps = 52/321 (16%)

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGLAQGNLASEAVDLFK 198
            D +  TT++  Y   G+I  A+ VF+E  V  RD   +NA+I G +  N    A++LF 
Sbjct: 78  PDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFC 137

Query: 199 RMKMEGVFKPNEVTVLGALAACGH-LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
           +MK EG FKP++ T    LA     +   K+  + H    +        V NA++ +Y++
Sbjct: 138 KMKHEG-FKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSR 196

Query: 258 CG----LLDKAFEVFDNIKCRKS-------------------------------LVTWNT 282
           C     LL  A +VFD+I  +                                 LV +N 
Sbjct: 197 CASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNA 256

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           M+  +   G    ALE+  +M  +G++ D+ +Y + + AC +A L+  G ++   +    
Sbjct: 257 MISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLR-- 314

Query: 343 VKPNMKHY--GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            + +   +   S+V L  + G+  EA  I + +    D+V W  LL      G V    I
Sbjct: 315 -REDFSFHFDNSLVTLYYKCGKFNEARAIFEKMP-AKDLVSWNALLS-----GYVSSGHI 367

Query: 401 ASRKLV--EMGSNNCGDFVLL 419
              KL+  EM   N   ++++
Sbjct: 368 GEAKLIFKEMKEKNILSWMIM 388



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 52/155 (33%)

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIK-----CRKSLVT---------------------- 279
           + N +ID+Y K   LD A ++FD I       R ++V+                      
Sbjct: 51  ILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSM 110

Query: 280 -----WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL------------CAC 322
                +N M+  F+ + DG  A+ LF +M   G KPDD +Y + L            C  
Sbjct: 111 RDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQ 170

Query: 323 NHAGLVDDGVRLFNSMAN--------CGVKPNMKH 349
            HA  +  G     S++N        C   P++ H
Sbjct: 171 FHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLH 205


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/446 (39%), Positives = 293/446 (65%), Gaps = 9/446 (2%)

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            + T ++  Y+K G +  A+ +FD+  ++D+  W  +I+  A+ +   EA+ +F+ M   
Sbjct: 282 FVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCS 341

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           G+ KP+ VT+L  ++AC +LG   +   +H Y     L+  + + NA+I+MYAKCG LD 
Sbjct: 342 GI-KPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDA 400

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A +VF+ +  R ++V+W++M+ AFA+HG+   +L LF QM +  V+P++V+++  L  C+
Sbjct: 401 ARDVFEKMPTR-NVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCS 459

Query: 324 HAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           H+GLV++G ++F SM +   + P ++HYG +VDL GRA  L+EA ++++S+ M  ++V+W
Sbjct: 460 HSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIW 519

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
            +L+ AC+++G++E+ E+A+++++++  ++ G  VL+SN+YA   RWD V  +R  M+ +
Sbjct: 520 GSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKK 579

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            V K  G S I++ G  H+F   DK H +  EIY KL E++ K+K  GY      VL D+
Sbjct: 580 KVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDV 639

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATS------IQVFKNLRICRDCHDVIKLISKVY 556
            EEEK++ + +HSEKLA+ FGL++  +         I++ KNLR+C DCH   KL+SKVY
Sbjct: 640 EEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVY 699

Query: 557 NREIIVRDRVRFHRFKDGACSCKDYW 582
             EIIVRDR RFHR+KDG CSC+DYW
Sbjct: 700 ELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 206/421 (48%), Gaps = 39/421 (9%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           N +L+K S   +++HI  KQL AH+  T           S +      S    L+YA  L
Sbjct: 16  NTILEKLSFCKSLNHI--KQLHAHILRTVINHKLN----SFLFNLSFSSSSINLSYALNL 69

Query: 65  FRQINA-PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           F  I+  P +  FN++LR L+ S +P   +L+Y+++     R D ++    LKA ++V A
Sbjct: 70  FSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSA 129

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           LFE +++H    +   L+D  + T L+D+YA  G I  A+ VFDEM  RD+ +WN +I  
Sbjct: 130 LFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIER 189

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             +  L  EA  LF+ MK   V  P+E+ +   ++ACG  G  +    I++++ E  + M
Sbjct: 190 YCRFGLLDEAFKLFEEMKDSNVM-PDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRM 248

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR----------------------------- 274
           +  +  A++ MYA  G +D A E F  +  R                             
Sbjct: 249 DTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTE 308

Query: 275 -KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
            K LV W TM+ A+A       AL +FE+M  +G+KPD V+ L+ + AC + G +D    
Sbjct: 309 MKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKW 368

Query: 334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +       G++  +    +++++  + G L  A D+ + +    ++V W +++ A  ++G
Sbjct: 369 VHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPT-RNVVSWSSMINAFAMHG 427

Query: 394 D 394
           +
Sbjct: 428 E 428



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 8/254 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F Q        +  ++   A S  P  A+  + +M     + D +T    + AC  
Sbjct: 300 ARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVN 359

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L +   +H +   +G  +   +   L+++YAK G + +A+ VF++M  R++ SW+++
Sbjct: 360 LGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSM 419

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE- 239
           I   A    AS+++ LF +MK E V +PNEVT +G L  C H G  +EG KI   + +E 
Sbjct: 420 INAFAMHGEASDSLSLFAQMKQENV-EPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEY 478

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            +   +     ++D++ +  LL +A EV +++    ++V W +++ A  VHG+    LEL
Sbjct: 479 NITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGE----LEL 534

Query: 300 FEQMGRAGVK--PD 311
            E   +  +K  PD
Sbjct: 535 GELAAKRILKLEPD 548



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 141/336 (41%), Gaps = 45/336 (13%)

Query: 112 SFALKACARVL-------ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           SFA+ A   +L       +L    Q+H+H+LR             L   +    +  A  
Sbjct: 9   SFAVSAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALN 68

Query: 165 VFDEMG-VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
           +F  +  + +   +N+L+  L++       +  ++R++  G  + + ++    L A   +
Sbjct: 69  LFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGG-RFDRISFPPILKAVSKV 127

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
            A  EG ++H +  +     +  V   ++DMYA CG ++ A  VFD +  ++ +VTWNTM
Sbjct: 128 SALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMS-QRDVVTWNTM 186

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG-----------LVDDGV 332
           +  +   G    A +LFE+M  + V PD++     + AC   G           L+++ V
Sbjct: 187 IERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDV 246

Query: 333 RLFNSMANCGVK--------------------PNMKHYGSVVDLLGRAGRLQEACDIVKS 372
           R+   +    V                      N+    ++V    +AGRL +A  I   
Sbjct: 247 RMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQ 306

Query: 373 VSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
             M  D+V W T++ A   Y + +  + A R   EM
Sbjct: 307 TEM-KDLVCWTTMISA---YAESDHPQEALRVFEEM 338


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/580 (36%), Positives = 330/580 (56%), Gaps = 10/580 (1%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
            ++LQ C ++ ++     +QL   L  +G     +    +K+++ YA   L  + +A  L
Sbjct: 66  TSVLQSCVASRSLGTG--RQLHGRLLVSGLGPDTVLA--TKLVDLYAACGL--VGHARRL 119

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
           F  +   +   +N ++R  A       A+  YR M+      D  T   ALKACA +L L
Sbjct: 120 FDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDL 179

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               ++H  VL   +  D  +   L+D+YAK G +  A+ VFD + VRD   WN++IA  
Sbjct: 180 ETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAY 239

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
            Q     EA+ L + M   GV  P   T++  ++A     A   G ++H +      D  
Sbjct: 240 GQNGRPMEALSLCRDMAANGV-GPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQ 298

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
             +  +++DMYAK G +  A  +F+ +  ++ LV+WN M+  + +HG    AL+LF +M 
Sbjct: 299 DKLKTSLVDMYAKSGWVQVARVLFEQL-MKRELVSWNAMICGYGMHGHFDEALKLFNKMR 357

Query: 305 -RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGR 362
             A V PD+++++  L ACNH G+V +    F  M +   +KP ++H+  +VD+LG AGR
Sbjct: 358 VEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGR 417

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
            +EA D++K + M  D  +W  LL  C+++ +VE+ E+A +KL+E+   + G++VLLSN+
Sbjct: 418 FEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNI 477

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YA   +W+   RVRK M NR +KK+ G S+IE+ G  H F   D SH +  EIYE+L+ +
Sbjct: 478 YAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERL 537

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
              + + GY   T  V HD+G++EK N +  HSE+LA+AFGLIST   T + V KNLR+C
Sbjct: 538 EGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVC 597

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH VIKLIS++  REII+RD  R+H F +G CSCKDYW
Sbjct: 598 EDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/523 (37%), Positives = 312/523 (59%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF ++   S   +N ++     +     A++ + QM +        T S  + ACA 
Sbjct: 101 ARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAA 160

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              +FE  Q+H   L+    ++  +GT LLDVYAK G +  A  VF+ M  R   +W+++
Sbjct: 161 KCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSM 220

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +AG  Q  L  EA+ LF R +  G+ + N+ T+  AL+AC    A  EG ++     +  
Sbjct: 221 VAGYVQNELYEEALVLFHRAQAMGL-EHNQFTISSALSACAARAALIEGKQVQAVSCKTG 279

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           +  N+ V +++IDMYAKCG++++A+ VF +++  K++V WN ++  F+ H     A+  F
Sbjct: 280 IGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAILSGFSRHVRSLEAMIYF 338

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGR 359
           E+M + G+ P+D++Y++ L AC+H GLV+ G + F+ M     V PN+ HY  +VD+LGR
Sbjct: 339 EKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGR 398

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L EA D +  +       +W +LL +C++Y ++E+AE+A++ L E+  +N G+ VLL
Sbjct: 399 AGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLL 458

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YAA +RW++V R R  +K    KK  G S+IE+   +H F   +++H +  EIY KL
Sbjct: 459 SNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKL 518

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           ++++ ++K+ GY A T   LHD+ E  K+  L +HSEKLA+ FG++       I++ KNL
Sbjct: 519 EDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNL 578

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RIC DCH  +KL S +  REIIVRD  RFH FK+G CSC ++W
Sbjct: 579 RICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 173/341 (50%), Gaps = 12/341 (3%)

Query: 74  NDFNAVLRGL-----AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL 128
           N F+  +R L     A + +P++  L +   +R +H S+       L++ AR  A  E +
Sbjct: 12  NSFSLQVRHLLAISNAMAERPSSKELVWVG-IRATHVSEL---QHLLQSSARNRAAIEGM 67

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
             H+ ++R G  AD +    L+++Y+K G + SA+K+FDEM VR + SWN ++    Q  
Sbjct: 68  ACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNG 127

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
              +A+ LF +M+ EG    +E TV   + AC       E  ++H +  +  LD NV V 
Sbjct: 128 DCEKALVLFMQMQKEGT-SCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVG 186

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
            A++D+YAKCGL+  A  VF+ +   +S VTW++MV  +  +     AL LF +    G+
Sbjct: 187 TALLDVYAKCGLVKDANLVFECMP-ERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGL 245

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           + +  +  +AL AC     + +G ++       G+  N+    S++D+  + G ++EA  
Sbjct: 246 EHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYT 305

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           +  SV    ++VLW  +L     +     A I   K+ +MG
Sbjct: 306 VFSSVE-EKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMG 345


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/561 (36%), Positives = 324/561 (57%), Gaps = 8/561 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K++  +   +G F S L  + + +++ YA      L  A  LF  +   +   +N+++  
Sbjct: 256 KEIHGYAMRSG-FDS-LVNISTALVDMYA--KCGSLETARQLFDGMLERNVVSWNSMIDA 311

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              +  P  A+L +++ML    +   ++   AL ACA +  L     IH   +  G   +
Sbjct: 312 YVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRN 371

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +  +L+ +Y K  E+ +A  +F ++  R + SWNA+I G AQ     +A++ F +M+ 
Sbjct: 372 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS 431

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
             V KP+  T +  + A   L        IH  +    LD NV V  A++DMYAKCG + 
Sbjct: 432 RTV-KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIM 490

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  +FD +   + + TWN M+  +  HG G  ALELFE+M +  +KP+ V++L+ + AC
Sbjct: 491 IARLIFD-MMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISAC 549

Query: 323 NHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +H+GLV+ G++ F  M  N  ++ +M HYG++VDLLGRAGRL EA D +  + +   + +
Sbjct: 550 SHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNV 609

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           +  +LGACQ++ +V  AE A+ +L E+  ++ G  VLL+N+Y A   W+ VG+VR +M  
Sbjct: 610 YGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLR 669

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           + ++K PG S +E+   +H FF+   +H   ++IY  L++++  IKE GY   T+ VL  
Sbjct: 670 QGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-G 728

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           +  + KE  L  HSEKLA++FGL++T+  T+I V KNLR+C DCH+  K IS V  REI+
Sbjct: 729 VENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIV 788

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRD  RFH FK+GACSC DYW
Sbjct: 789 VRDMQRFHHFKNGACSCGDYW 809



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 189/380 (49%), Gaps = 12/380 (3%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL++CSS        ++Q+   +   G +Q   F  ++K++  +       +  A  +F 
Sbjct: 43  LLERCSSLK-----ELRQILPLVFKNGLYQEHFF--QTKLVSLFC--RYGSVDEAARVFE 93

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            I++     ++ +L+G A  S    A+ ++ +M            ++ LK C     L  
Sbjct: 94  PIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRV 153

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             +IH  +++ GF  D    T L ++YAK  ++  A+KVFD M  RD+ SWN ++AG +Q
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQ 213

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
             +A  A+++ K M  E + KP+ +T++  L A   L     G +IH Y      D  V 
Sbjct: 214 NGMARMALEMVKSMCEENL-KPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           +  A++DMYAKCG L+ A ++FD +   +++V+WN+M+ A+  + +   A+ +F++M   
Sbjct: 273 ISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDE 331

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           GVKP DVS + AL AC   G ++ G  +       G+  N+    S++ +  +   +  A
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391

Query: 367 CDIVKSVSMGTDMVLWQTLL 386
             +   +   T +V W  ++
Sbjct: 392 ASMFGKLQSRT-LVSWNAMI 410


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/523 (36%), Positives = 302/523 (57%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF+ +    +  +  ++ GL  +     A+  +R+M       D  T    L AC  
Sbjct: 231 AKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGA 290

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL E  QIH+++ R  +  +  +G+ L+D+Y+K   I  A+ VF  M  R+I SW A+
Sbjct: 291 LAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAM 350

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G  Q   + EAV  F  M+M+G+ KP++ T+   +++C +L + +EG + H       
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQMDGI-KPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L   + V NA++ +Y KCG ++ A  +FD +      V+W  +V  +A  G     ++LF
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ-VSWTALVTGYAQFGKAKETIDLF 468

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
           E+M   G+KPD V+++  L AC+ AGLV+ G   F+SM  + G+ P   HY  ++DL  R
Sbjct: 469 EKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSR 528

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           +GR +EA + +K +    D   W TLL +C+L G++E+ + A+  L+E    N   +VLL
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLL 588

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
            +++AA  +W +V  +R+ M++R VKK PG S+I+    +H F   D+SH     IYEKL
Sbjct: 589 CSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           + +  K+ E GY    S VLHD+ + +K + + +HSEKLA+AFGLI   +   I++ KNL
Sbjct: 649 EWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNL 708

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH+  K ISK+  R+I+VRD VRFH+F DG CSC D+W
Sbjct: 709 RVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 173/362 (47%), Gaps = 35/362 (9%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFALKACARVL 122
           LF  +       +NA++ G + +  P  +V  YR +LR  S R   +T S  +   + + 
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV----------- 171
                  +H  VLR GF A A +G+ L+D+YAK+G I  A++VF EM             
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 172 --------------------RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
                               RD  +W  ++ GL Q  L  EA+D+F+RM+ EGV   ++ 
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGV-GIDQY 279

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T    L ACG L A +EG +IH YI     + NV V +A++DMY+KC  +  A  VF  +
Sbjct: 280 TFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
            CR ++++W  M++ +  +     A+  F +M   G+KPDD +  + + +C +   +++G
Sbjct: 340 TCR-NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
            +        G+   +    ++V L G+ G +++A  +   +S   D V W  L+     
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVTGYAQ 457

Query: 392 YG 393
           +G
Sbjct: 458 FG 459



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 140/294 (47%), Gaps = 14/294 (4%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
              ++L  C +  A+     KQ+ A++T T  ++  +F V S +++ Y  S    +  A 
Sbjct: 280 TFGSILTACGALAALEEG--KQIHAYITRT-WYEDNVF-VGSALVDMY--SKCRSIRLAE 333

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           A+FR++   +   + A++ G   ++    AV  + +M     + D  T    + +CA + 
Sbjct: 334 AVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLA 393

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           +L E  Q H   L  G +    +   L+ +Y K G I  A ++FDEM   D  SW AL+ 
Sbjct: 394 SLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVT 453

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
           G AQ   A E +DLF++M   G+ KP+ VT +G L+AC   G  ++G    +Y    + D
Sbjct: 454 GYAQFGKAKETIDLFEKMLANGL-KPDGVTFIGVLSACSRAGLVEKG---CDYFDSMQKD 509

Query: 243 MNVVVCN----AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
             +V  +     +ID+Y++ G   +A E    +        W T++ +  + G+
Sbjct: 510 HGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGN 563



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 125/321 (38%), Gaps = 65/321 (20%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMG-------------------------------VRDIASW 177
           LL  YAK G +  A++VFDEM                                 RD  S+
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSY 113

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NALI G +     + +V L++ +  E   +P  +T+   +     L     G  +H  + 
Sbjct: 114 NALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVL 173

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN----------------IKCR------- 274
                    V + ++DMYAK GL+  A  VF                  ++C+       
Sbjct: 174 RLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKG 233

Query: 275 -------KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
                  +  +TW TMV     +G    AL++F +M   GV  D  ++ + L AC     
Sbjct: 234 LFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAA 293

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           +++G ++   +     + N+    ++VD+  +   ++ A  + + ++   +++ W  ++ 
Sbjct: 294 LEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTC-RNIISWTAMIV 352

Query: 388 ACQLYGDVEMAEIASRKLVEM 408
               YG    +E A R   EM
Sbjct: 353 G---YGQNACSEEAVRAFSEM 370


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/577 (34%), Positives = 327/577 (56%), Gaps = 9/577 (1%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +L+ C+  G    I + +    L+    F+S ++ V   +I+ Y  S    L  A  +  
Sbjct: 352 ILRTCTCTG---QIELGEQIHSLSIKNGFESDMY-VSGVLIDMY--SKYRCLDKARKILE 405

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            +       + +++ G         A+  +++M       D +  + A  ACA + A+ +
Sbjct: 406 MLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQ 465

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
            LQIH+ V   G+ AD  +  TL+++YA+ G    A  +F E+  +D  +WN LI+G  Q
Sbjct: 466 GLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQ 525

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
             L  +A+ +F +M   G  K N  T + A++A  +L   K+G ++H    +        
Sbjct: 526 SRLYEQALMVFMKMSQAGA-KYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETE 584

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V NA+I +Y KCG ++ A  +F  +  R   V+WNT++ + + HG G  AL+LF+QM + 
Sbjct: 585 VANALISLYGKCGSIEDAKMIFSEMSLRNE-VSWNTIITSCSQHGRGLEALDLFDQMKQE 643

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQE 365
           G+KP+DV+++  L AC+H GLV++G+  F SM+N  G+ P   HY  VVD+LGRAG+L  
Sbjct: 644 GLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDR 703

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A   V  + +  + ++W+TLL AC+++ ++E+ E+A++ L+E+  ++   +VLLSN YA 
Sbjct: 704 ARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAV 763

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
             +W +  +VRK MK+R ++K PG S+IEV   +H FF  D+ H    +IY+ L E+  +
Sbjct: 764 TGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDR 823

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           + + GY      + H+  +E+K+     HSEKLAVAFGL++      ++V KNLR+C DC
Sbjct: 824 LSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDC 883

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H  +K  S+V  REI++RD  RFH F  G+CSC DYW
Sbjct: 884 HSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 170/338 (50%), Gaps = 9/338 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           FN ++ G A       A+  + +M     R D +T +  L ACA V  L +  Q+HS++L
Sbjct: 213 FNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLL 272

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + G   D +   +LLD+Y K G+I +A  +F+     ++  WN ++    Q +  +++ +
Sbjct: 273 KAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFE 332

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +F +M+  G+  PN+ T    L  C   G  + G++IH    +   + ++ V   +IDMY
Sbjct: 333 IFGQMQATGI-HPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMY 391

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +K   LDKA ++ + ++ ++ +V+W +M+  +  H     AL  F++M   GV PD++  
Sbjct: 392 SKYRCLDKARKILEMLE-KRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGL 450

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
            +A  AC     +  G+++   +   G   ++  + ++V+L  R GR +EA  + + +  
Sbjct: 451 ASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDH 510

Query: 376 GTDMVLWQTLL---GACQLYGDVEMAEIASRKLVEMGS 410
             D + W  L+   G  +LY   E A +   K+ + G+
Sbjct: 511 -KDEITWNGLISGFGQSRLY---EQALMVFMKMSQAGA 544



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 153/292 (52%), Gaps = 11/292 (3%)

Query: 106 SDALTCSFALKAC-ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           S  LTC  AL+AC  R       L+IH+  +  G  AD L+G  L+D+YAK G +  A++
Sbjct: 42  SADLTC--ALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQ 99

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VF E+  RD  SW A+++G AQ  L  EA  L+ +M    V  P    +   L+AC    
Sbjct: 100 VFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVI-PTPYVLSSVLSACTKGK 158

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF-DNIKCRKSLVTWNTM 283
            + +G  IH  + ++       V NA+I +Y   G    A  VF D + C +  VT+NT+
Sbjct: 159 LFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDR--VTFNTL 216

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +   A  G G  AL++F++M  +G++PD V+  + L AC   G +  G +L + +   G+
Sbjct: 217 ISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGM 276

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395
             +    GS++DL  + G ++ A DI  ++   T++VLW  +L A   YG +
Sbjct: 277 SFDYITEGSLLDLYVKCGDIETAHDIF-NLGDRTNVVLWNLMLVA---YGQI 324


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/523 (37%), Positives = 312/523 (59%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF ++   S   +N ++     +     A++ + QM +        T S  + ACA 
Sbjct: 74  ARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAA 133

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              +FE  Q+H   L+    ++  +GT LLDVYAK G +  A  VF+ M  R   +W+++
Sbjct: 134 KCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSM 193

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +AG  Q  L  EA+ LF R +  G+ + N+ T+  AL+AC    A  EG ++     +  
Sbjct: 194 VAGYVQNELYEEALVLFHRAQAMGL-EHNQFTISSALSACAARAALIEGKQVQAVSCKTG 252

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           +  N+ V +++IDMYAKCG++++A+ VF +++  K++V WN ++  F+ H     A+  F
Sbjct: 253 IGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAILSGFSRHVRSLEAMIYF 311

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGR 359
           E+M + G+ P+D++Y++ L AC+H GLV+ G + F+ M     V PN+ HY  +VD+LGR
Sbjct: 312 EKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGR 371

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L EA D +  +       +W +LL +C++Y ++E+AE+A++ L E+  +N G+ VLL
Sbjct: 372 AGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLL 431

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YAA +RW++V R R  +K    KK  G S+IE+   +H F   +++H +  EIY KL
Sbjct: 432 SNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKL 491

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           ++++ ++K+ GY A T   LHD+ E  K+  L +HSEKLA+ FG++       I++ KNL
Sbjct: 492 EDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNL 551

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RIC DCH  +KL S +  REIIVRD  RFH FK+G CSC ++W
Sbjct: 552 RICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 159/310 (51%), Gaps = 6/310 (1%)

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
           +R +H S+       L++ AR  A  E +  H+ ++R G  AD +    L+++Y+K G +
Sbjct: 15  IRATHVSEL---QHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLV 71

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
            SA+K+FDEM VR + SWN ++    Q     +A+ LF +M+ EG    +E TV   + A
Sbjct: 72  ESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGT-SCSEFTVSSVVCA 130

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
           C       E  ++H +  +  LD NV V  A++D+YAKCGL+  A  VF+ +   +S VT
Sbjct: 131 CAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMP-ERSDVT 189

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           W++MV  +  +     AL LF +    G++ +  +  +AL AC     + +G ++     
Sbjct: 190 WSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSC 249

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             G+  N+    S++D+  + G ++EA  +  SV    ++VLW  +L     +     A 
Sbjct: 250 KTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAILSGFSRHVRSLEAM 308

Query: 400 IASRKLVEMG 409
           I   K+ +MG
Sbjct: 309 IYFEKMQQMG 318


>gi|242053821|ref|XP_002456056.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
 gi|241928031|gb|EES01176.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
          Length = 592

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/567 (35%), Positives = 324/567 (57%), Gaps = 10/567 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFP---VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAV 79
           +QL  HL   G   +       +   ++ FYA   L +L+   A       PS   ++++
Sbjct: 29  QQLHGHLLKAGHVPATASSHTLLGHHLLTFYARCALPDLSL-RAFLDLPAPPSPAAWSSL 87

Query: 80  LRGLAHSSKPTNAVLWYRQMLR-GSHRSDA-LTCSFALKACARVLA--LFETLQIHSHVL 135
           +   A +     A   +R+ML  G   +D  +  +    A A  L+   F    +H    
Sbjct: 88  ISSFAQNGLAAAAFDTFRRMLAAGVPATDRNIPSAAKAVAAAETLSRPPFAPHALHGLAA 147

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           +  F  D  +G+ +LD+YAK G +  A+++FDEM  R++ SW+ALI G A   +   A+ 
Sbjct: 148 KTPFAGDVFVGSAILDMYAKCGHLADARRLFDEMPERNVVSWSALICGYADAGMHPAAMG 207

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +F R+ +E     N+ TV   +  C     ++ G ++H    +  LD +  V ++++ +Y
Sbjct: 208 IF-RLALEEAVPVNDFTVSSIIRVCAAATLFELGAQVHARATKTALDASPFVGSSLVSVY 266

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCGL++ A+ VF N    K+L  WN +++A A HG    A E F +M  AG +P+ +++
Sbjct: 267 SKCGLVECAYRVF-NEAPEKNLGIWNAVLIASAQHGHTAAAFERFMEMQNAGFRPNHITF 325

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           L  + AC+HAGLVD+G R F+ M + G++P  +HY S+VDLLGR GR++EA D+++S+ M
Sbjct: 326 LCLVTACSHAGLVDEGKRYFSLMKDYGIEPQAEHYASMVDLLGRVGRIKEALDLIESMPM 385

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
                +W  LL +C+++ D + AEIA+++L E GS + G  +LLS+ YAA  R  D    
Sbjct: 386 EPPESVWGALLMSCRIFKDADTAEIAAKRLFETGSRSSGAHMLLSSTYAAAGRHIDAALA 445

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           RKAM++  V+K  G S++E  G +H F ++ + H +  EIY+ L+++  K++  GY A T
Sbjct: 446 RKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHQRSEEIYKVLEKVGEKMEAAGYVADT 505

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
           S V+ D+  +EK   + YHSE+LA+  GL+   +   I+V KNLR+C DCH  IK ++K 
Sbjct: 506 SAVVKDVDGDEKRATVRYHSERLAIGLGLLIVPQGVPIRVMKNLRVCDDCHSAIKYLTKC 565

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
             R +++RD  RFHRF+DG CSC D+W
Sbjct: 566 TGRVVVLRDNRRFHRFEDGVCSCGDFW 592



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 15/295 (5%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFL-----ADALLGTTLLDVYAKVG-EIVSAKKVFDE 168
           L A +   AL +  Q+H H+L+ G +     +  LLG  LL  YA+     +S +   D 
Sbjct: 16  LVALSAARALPKGQQLHGHLLKAGHVPATASSHTLLGHHLLTFYARCALPDLSLRAFLDL 75

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK-----PNEVTVLGALAACGHL 223
                 A+W++LI+  AQ  LA+ A D F+RM   GV       P+    + A       
Sbjct: 76  PAPPSPAAWSSLISSFAQNGLAAAAFDTFRRMLAAGVPATDRNIPSAAKAVAAAETLSRP 135

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
                   +H    +     +V V +A++DMYAKCG L  A  +FD +   +++V+W+ +
Sbjct: 136 PFAPHA--LHGLAAKTPFAGDVFVGSAILDMYAKCGHLADARRLFDEMP-ERNVVSWSAL 192

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +  +A  G  P A+ +F       V  +D +  + +  C  A L + G ++        +
Sbjct: 193 ICGYADAGMHPAAMGIFRLALEEAVPVNDFTVSSIIRVCAAATLFELGAQVHARATKTAL 252

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             +     S+V +  + G L E    V + +   ++ +W  +L A   +G    A
Sbjct: 253 DASPFVGSSLVSVYSKCG-LVECAYRVFNEAPEKNLGIWNAVLIASAQHGHTAAA 306


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/581 (34%), Positives = 327/581 (56%), Gaps = 18/581 (3%)

Query: 7   LLQKCS-----SNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           +L KC+       G   H HI+        +  F+  L  + + I+  YA      L  A
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQ--------SSTFEDDLV-LLNFILNMYA--KCGSLEEA 159

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             LF ++       +  ++ G + S + + A+  + +ML    + +  T S  LKA    
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
            +     Q+H+  L++G+  +  +G++LLD+YA+   +  AK +F+ +  +++ SWNALI
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           AG A+       + LF +M  +G F+P   T      AC   G+ ++G  +H ++ +   
Sbjct: 280 AGHARKGEGEHVMRLFLQMLRQG-FEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGG 338

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
                + N +IDMYAK G +  A +VF  +  ++ +V+WN+++  +A HG G  AL+LFE
Sbjct: 339 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHGLGAEALQLFE 397

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           QM +A V+P+++++L+ L AC+H+GL+D+G   F  M    ++  + H+ +VVDLLGRAG
Sbjct: 398 QMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAG 457

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           RL EA   ++ + +     +W  LLG+C+++ ++++   A+ ++ E+  ++ G  VLLSN
Sbjct: 458 RLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 517

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YA+  R  D  +VRK MK   VKK P  S++E+   +H F  +D SH    EI    ++
Sbjct: 518 IYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEK 577

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           I  KIKE GY   TS VL  + ++++E  L YHSEKLA+AF ++ T    +I++ KN+RI
Sbjct: 578 ISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRI 637

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH   K  S+V  REIIVRD  RFH F  G CSC+DYW
Sbjct: 638 CGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 156/292 (53%), Gaps = 3/292 (1%)

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
           GS   +    S  L  C  +  L +   IH+H+    F  D +L   +L++YAK G +  
Sbjct: 99  GSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEE 158

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+ +FD+M  +D+ SW  LI+G +Q   ASEA+ LF +M   G F+PNE T+   L A G
Sbjct: 159 AQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSLLKASG 217

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
              +   G ++H +  +   DMNV V ++++DMYA+   + +A  +F+++   K++V+WN
Sbjct: 218 TGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAA-KNVVSWN 276

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            ++   A  G+G   + LF QM R G +P   +Y +   AC  +G ++ G  +   +   
Sbjct: 277 ALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKS 336

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           G +P      +++D+  ++G +++A  + + + +  D+V W +++     +G
Sbjct: 337 GGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHG 387


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/524 (35%), Positives = 312/524 (59%), Gaps = 3/524 (0%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           +A  +F ++ + S   +N ++  L  + +   A+    QM R        T S  L ACA
Sbjct: 117 FARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACA 176

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
              AL E   +H+  ++     +  + T LLDVYAK G +  A  VF+ M  R + +W++
Sbjct: 177 AKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSS 236

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           + AG  Q  +  +A+ LF++    G+ K ++  +   + AC  L A  EG +++  + + 
Sbjct: 237 MAAGYVQNEMYEQALALFRKAWETGL-KHDQFLMSSVICACAGLAAMIEGKQMNALLSKS 295

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
               N+ V +++IDMYAKCG ++++++VF +++ ++++V WN M+   + H      + L
Sbjct: 296 GFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHARSLEVMIL 354

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLG 358
           FE+M + G+ P+DV++++ L AC H GLV  G + F+ M     + PN+ HY  +VD L 
Sbjct: 355 FEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLS 414

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAG++ EA D++  +       +W +LL +C+ +G++E+AE+A++KL ++  +N G+++L
Sbjct: 415 RAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLL 474

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YAA  +WD+V ++RK +K  DVKK  G S+IE+   +H F   +++H K  EIY K
Sbjct: 475 LSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSK 534

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+E+M ++++ GY   T   LH +GE  K+  L +HSEKLA   GL+       I++ KN
Sbjct: 535 LNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKN 594

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRIC DCH  +KL SK + R++IVRD  RFH FK+G CSC D+W
Sbjct: 595 LRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 174/374 (46%), Gaps = 35/374 (9%)

Query: 71  PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQI 130
           P+T DFNA      H                             LK CA+   L +    
Sbjct: 54  PTTKDFNATHVSFVHE---------------------------ILKLCAKRKLLLQGKAC 86

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA 190
           H+ +L  G   D L    L+++Y+K G +  A++VFDEM  R + SWN +I  L Q    
Sbjct: 87  HAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEE 146

Query: 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250
           +EA+DL  +M+ EG    +E T+   L AC    A  E   +H +  +  +D+NV V  A
Sbjct: 147 NEALDLLLQMQREGT-PFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATA 205

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           ++D+YAKCGL+  A  VF+++  R S+VTW++M   +  +    +AL LF +    G+K 
Sbjct: 206 LLDVYAKCGLMKDAVCVFESMPDR-SVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKH 264

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           D     + +CAC     + +G ++   ++  G   N+    S++D+  + G ++E+  + 
Sbjct: 265 DQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVF 324

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
           + V    ++VLW  ++     +       I   K+ +MG +   D   +S L A      
Sbjct: 325 RDVE-KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSP-NDVTFVSVLSAC----G 378

Query: 431 DVGRVRKAMKNRDV 444
            +G VRK  K  D+
Sbjct: 379 HMGLVRKGQKYFDL 392


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/551 (37%), Positives = 310/551 (56%), Gaps = 23/551 (4%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +I   + SP   L  A  LF ++       ++A++ G     +P  A+  YR+M +    
Sbjct: 100 LISALSRSP-RHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRM-QEEPG 157

Query: 106 SDALTCSFALKA---------CARVLALFETLQIHSHVLRHGFLA---DALLGTTLLDVY 153
           +D     F   +         C R        ++H HV+R G  A   DA+L + L D+Y
Sbjct: 158 NDGADNEFTASSALAAAAAARCGRA-----GRELHCHVVRRGIDAAGGDAVLWSALADMY 212

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           AK G +  A++VFD M VRD  SW A++     G    E   LF  M      +PNE T 
Sbjct: 213 AKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTY 272

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
            G L AC        G ++H  + +     +    +A++ MY+KCG +  A  VF+ +  
Sbjct: 273 AGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAM-A 331

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
           +  LV+W  ++  +A +G    AL  F+   R+G+KPD V+++  L AC HAGLVD G+ 
Sbjct: 332 KPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLE 391

Query: 334 LFNSMAN--CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           +F+S+    C ++    HY  V+DLL R+G+ + A  ++ ++++  +  LW +LLG C++
Sbjct: 392 IFHSIKEQYC-IEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRI 450

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           + +V +A  A+  L E+   N   +V L+N+YA+   +D+V  VR+ M+++ + K+P  S
Sbjct: 451 HKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASS 510

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
           +IEVG  +H F   DKSH K  EIY  L ++  K+ E GY A    VLHD+ +E+KE  +
Sbjct: 511 WIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDI 570

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
            YHSE+LAVAFG+I+T E + I+VFKNLRIC DCH  IKLIS++  R+IIVRD  RFH F
Sbjct: 571 GYHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHF 630

Query: 572 KDGACSCKDYW 582
           KDG CSC+DYW
Sbjct: 631 KDGICSCRDYW 641


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/524 (37%), Positives = 317/524 (60%), Gaps = 9/524 (1%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT-CSFALKACARVL 122
           +F ++   +   +NA +       +  +A++ +++ L      +++T C+F L AC  ++
Sbjct: 165 MFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAF-LNACVDMV 223

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-DIASWNALI 181
            L    Q+H+ ++R G+  D  +   L+D Y K G+IVSA+ VF+ +G R ++ SW +++
Sbjct: 224 RLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSML 283

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           A L Q +    A  +F + + E   +P +  +   L+AC  LG  + G  +H    +  +
Sbjct: 284 AALVQNHEEERACMVFLQARKE--VEPTDFMISSVLSACAELGGLELGRSVHALAVKACV 341

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + N+ V +A++DMY KCG ++ A +VF  +   ++LVTWN M+  +A  GD   AL LFE
Sbjct: 342 EDNIFVGSALVDMYGKCGSIENAEQVFSELP-ERNLVTWNAMIGGYAHQGDIDMALRLFE 400

Query: 302 QM--GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLG 358
           +M  G  G++P  V+ ++ L  C+  G V+ G+++F SM  N G++P  +H+  VVDLLG
Sbjct: 401 EMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLG 460

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           R+G +  A + ++++++   + +W  LLGAC+++G  E+ +IA+ KL E+   + G+ V+
Sbjct: 461 RSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVV 520

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+ A+  RW++   VRK MK+  +KK  G+S+I V   IH F   D SH +  EI   
Sbjct: 521 LSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAM 580

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L ++   +KE GY   T+  L D+ +EEK + + YHSEK+A+AFGLI+  +   I++ KN
Sbjct: 581 LGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKN 640

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRIC DCH  IK IS++  REIIVRD  RFHRFKDG CSCKDYW
Sbjct: 641 LRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 186/395 (47%), Gaps = 15/395 (3%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           +A+   CS  G   H HI  ++ H+T    F S      + ++  Y  S L+ L  A  +
Sbjct: 15  SAVSTHCSILGRTIHAHI--IRTHVTPLPSFLS------NHLVNMY--SKLDLLNSAQHV 64

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124
               +  +   + +++ G  H+ +   A+L +  M R + + +  T     KA A V   
Sbjct: 65  LSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIP 124

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               QIH   L+ G + D  +G +  D+Y K G    A  +FDEM  R++A+WNA I+  
Sbjct: 125 MTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNA 184

Query: 185 AQGNLASEAVDLFKR-MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            Q   + +A+  FK  + + G  +PN +T    L AC  +     G ++H +I       
Sbjct: 185 VQDRRSLDAIVAFKEFLCVHG--EPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKE 242

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           +V V N +ID Y KCG +  A  VF+ I  RK++V+W +M+ A   + +  RA  +F Q 
Sbjct: 243 DVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQ- 301

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
            R  V+P D    + L AC   G ++ G  +        V+ N+    ++VD+ G+ G +
Sbjct: 302 ARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSI 361

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           + A  +   +    ++V W  ++G     GD++MA
Sbjct: 362 ENAEQVFSELP-ERNLVTWNAMIGGYAHQGDIDMA 395



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 20/214 (9%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V S +++ Y       +  A  +F ++   +   +NA++ G AH      A+  + +M  
Sbjct: 347 VGSALVDMYG--KCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTL 404

Query: 102 GSH--RSDALTCSFALKACARVLALFETLQI-HSHVLRHGFLADALLGTTLLDVYAKVGE 158
           GSH  R   +T    L  C+RV A+   +QI  S  L +G    A     ++D+  + G 
Sbjct: 405 GSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGL 464

Query: 159 IVSAKKVFDEMGVRD-IASWNALIAGLAQ------GNLASEAVDLFKRMKMEGVFKPNEV 211
           +  A +    M ++  I+ W AL+           G +A+E     K  +++ V   N V
Sbjct: 465 VDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAE-----KLFELDHVDSGNHV 519

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
            +   LA+ G    W+E   + + +++  +  NV
Sbjct: 520 VLSNMLASAGR---WEEATVVRKEMKDIGIKKNV 550


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/507 (38%), Positives = 299/507 (58%), Gaps = 3/507 (0%)

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           NA++ G +H  +   A+  + ++ +     +  T +  LK+ A + A   T Q+H+  ++
Sbjct: 373 NALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVK 432

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            GF+ DA +   L+D Y K   +  A +VF+E    DI +  ++I  L+Q +    A+ L
Sbjct: 433 IGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKL 492

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           F  M  +G+ +P+   +   L AC  L A+++G ++H ++ + +   +    NA++  YA
Sbjct: 493 FMEMLRKGL-EPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYA 551

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG ++ A   F ++   + +V+W+ M+   A HG G RALELF +M   G+ P+ ++  
Sbjct: 552 KCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMT 610

Query: 317 AALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           + LCACNHAGLVD+  R FNSM    G+    +HY  ++DLLGRAG+L +A ++V S+  
Sbjct: 611 SVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPF 670

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
             +  +W  LLGA +++ D E+ ++A+ KL  +     G  VLL+N YA+   W++V +V
Sbjct: 671 QANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKV 730

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           RK MK+ ++KK P  S+IEV   +H F   DKSH   +EIY KL E+   + + G+    
Sbjct: 731 RKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNV 790

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
              LHD+   EKE  L +HSE+LAVAF L+ST     I+V KNLRICRDCH   K ISK+
Sbjct: 791 DVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKI 850

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
            +REII+RD  RFH F+DG CSC DYW
Sbjct: 851 VSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 118/236 (50%), Gaps = 2/236 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L+ A+ +F + ++       +++  L+       A+  + +MLR     D    S  L A
Sbjct: 455 LSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA + A  +  Q+H+H+++  F++DA  G  L+  YAK G I  A+  F  +  R + SW
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSW 574

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           +A+I GLAQ      A++LF RM  EG+  PN +T+   L AC H G   E  +    ++
Sbjct: 575 SAMIGGLAQHGHGKRALELFGRMVDEGI-NPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633

Query: 238 EE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           E   +D      + +ID+  + G LD A E+ +++  + +   W  ++ A  VH D
Sbjct: 634 EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKD 689



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 155/351 (44%), Gaps = 3/351 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++       +NA++ G   +     A+    QM       +  T S  LKAC+ 
Sbjct: 256 ASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSG 315

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             A     QIH  +++    +D  +G  L+D+YAK   +  A+KVFD M  RD+   NAL
Sbjct: 316 AGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNAL 375

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I+G + G    EA+ LF  ++ EG+   N  T+   L +   L A     ++H    +  
Sbjct: 376 ISGCSHGGRHDEALSLFYELRKEGL-GVNRTTLAAVLKSTASLEAASTTRQVHALAVKIG 434

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              +  V N +ID Y KC  L  A  VF+       ++   +M+ A +    G  A++LF
Sbjct: 435 FIFDAHVVNGLIDSYWKCSCLSDANRVFEECS-SGDIIACTSMITALSQCDHGEGAIKLF 493

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M R G++PD     + L AC      + G ++   +       +     ++V    + 
Sbjct: 494 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKC 553

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
           G +++A ++  S      +V W  ++G    +G  + A     ++V+ G N
Sbjct: 554 GSIEDA-ELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGIN 603



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 141/297 (47%), Gaps = 7/297 (2%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAP-STNDFNAVLRG 82
           Q+ A    TG F S +F   + +  +     +++   A  +F + ++  +   +N ++  
Sbjct: 121 QVHAMAMATG-FGSDVFVANALVAMYGGFGFMDD---ARRVFNEADSERNAVSWNGLMSA 176

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              + +  +A+  + +M+    +      S  + AC     +    Q+H+ V+R G+  D
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
                 L+D+Y K+G +  A  +F++M   D+ SWNALI+G         A++L  +MK 
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            G+  PN  T+   L AC   GA+  G +IH ++ +   D +  +   ++DMYAK   LD
Sbjct: 297 SGLV-PNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLD 355

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            A +VFD +   + L+  N ++   +  G    AL LF ++ + G+  +  +  A L
Sbjct: 356 DARKVFDWM-FHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 133/286 (46%), Gaps = 7/286 (2%)

Query: 108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD 167
           A T S  L   A   AL     +H+ +L+ G LA       L+  Y+K      A++VFD
Sbjct: 4   AGTISQQLTRYAAAQALLPGAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRVFD 61

Query: 168 EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227
           E+      SW++L+   +   L   A+  F  M+ EGV   NE   L  +  C  +   +
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC-CNEFA-LPVVLKC--VPDAR 117

Query: 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
            G ++H          +V V NA++ MY   G +D A  VF+     ++ V+WN ++ A+
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAY 177

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM 347
             +     A+++F +M  +G++P +  +   + AC  +  ++ G ++   +   G   ++
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDV 237

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
               ++VD+  + GR+  A  I + +   +D+V W  L+  C L G
Sbjct: 238 FTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNG 282


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/564 (38%), Positives = 328/564 (58%), Gaps = 9/564 (1%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           +KQ  A L  TG  +S   P+ +K+      +      YAH L     AP +  F+++ R
Sbjct: 23  LKQAHARLVVTGHGRS--LPLITKLATLAVAA--GAAPYAHLLATSHPAPDSFLFSSLTR 78

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
             AH   P  A+ +YR +L  +    + T +   KACA + AL     IH+H +  GF +
Sbjct: 79  TAAHHGLPVAAIAFYRGLLSAALPFSSFTFTAVAKACADLSALRTGAAIHAHSILLGFGS 138

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  + T L+ +Y+K G++  A+K+FD +  R + +WNA+I+G  Q  LA   + ++K M+
Sbjct: 139 DRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQ 198

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
                 P+ +T +  L+AC   GA   G ++   +  ER+D++V + +A+++MYA+CG++
Sbjct: 199 AAKAV-PDSMTFVATLSACAQAGALDLGREVERRVVSERMDISVFLGSALVNMYARCGVV 257

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           DKA   FD ++  +++VTW +M+  + +HG G  A++LF  M   G  P+ V+++A L A
Sbjct: 258 DKARRWFDALQ-ERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLSA 316

Query: 322 CNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG-TDM 379
           C HAGLV +G   F  M    G+ P ++HY S+VD+ GRAG L EA   +     G    
Sbjct: 317 CAHAGLVMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFISDYMPGEPGP 376

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
            +W  +LGAC+++ +  +    + +L+ +   N    VLLSN+YA   +   V +VR  M
Sbjct: 377 EVWTAVLGACKMHKNFNLGVEVAERLIALEPENPSYHVLLSNIYALSGKMHHVEKVRNTM 436

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
             R +KK  GFS IE+GG  H F   +KSH +  EIY  L+E++ +I   GY   T  VL
Sbjct: 437 IKRRLKKQIGFSLIELGGTSHLFRMGEKSHPQTTEIYHYLEELIHRITAAGYMPETESVL 496

Query: 500 HDIGEEEKENALCYHSEKLAVAFGL-ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNR 558
           H++ EEE+E AL YHSEKLAVA+GL +S    T I+V KNLRIC DCH  IK +S V NR
Sbjct: 497 HELEEEEREGALRYHSEKLAVAYGLMMSVGSTTPIRVIKNLRICGDCHLAIKFMSAVENR 556

Query: 559 EIIVRDRVRFHRFKDGACSCKDYW 582
           EI+VRD+ RFH FKDG CSC +YW
Sbjct: 557 EIVVRDKHRFHHFKDGKCSCLEYW 580


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/515 (38%), Positives = 302/515 (58%), Gaps = 26/515 (5%)

Query: 71  PSTN--DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL 128
           P  N   + A++ G + + +P  A   +  MLR                      + +  
Sbjct: 97  PERNVVSWTAMISGYSQNERPDQAWELFIMMLRA--------------------GIHQVK 136

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           Q+H+  ++  F     +G++LLD+YAK   I  A++VFD +  RD+ S+ A+++G  Q  
Sbjct: 137 QVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLG 196

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
           L  EA+DLF+ +  EG+ + N+VT    L A   L +   G ++H  I    L   + + 
Sbjct: 197 LDEEALDLFRLLYNEGM-QCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQ 255

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N++IDMY+KCG L  +  VFD++  R S+V+WN M+M +  HG     ++LF  M    V
Sbjct: 256 NSLIDMYSKCGKLLYSRRVFDSMPER-SVVSWNAMLMGYGRHGLAHEVVQLFRSMCDE-V 313

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
           KPD V+ LA L   +H GLVD+G+ +F+ +        N +HYG V+DLLGR+G+LQ+A 
Sbjct: 314 KPDSVTLLAVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKAL 373

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
           ++++ +       +W +LLGAC+++ +V + E  ++KL+++   N G++V+LSN+YAA  
Sbjct: 374 NLIEKMPFQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAG 433

Query: 428 RWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487
            W DV RVRK M  + V K PG S++ +  VIH F + ++ H +  +I  K+ EI   IK
Sbjct: 434 MWKDVFRVRKLMLKKTVIKEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKEIYVAIK 493

Query: 488 EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHD 547
             G+    SCVLHD+ +E+KE  L  HSEKLA+ FGL+ST    +IQV KNLRIC DCH+
Sbjct: 494 AAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHN 553

Query: 548 VIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             K +SKVY REI +RD+ RFH   +GAC+C DYW
Sbjct: 554 FAKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 588



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 132/273 (48%), Gaps = 7/273 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
            +KQ+ A    T  F+  +F V S +++ YA S    +  A  +F  + A     + A+L
Sbjct: 134 QVKQVHAFAVKT-NFELHMF-VGSSLLDMYAKS--ENIQEARRVFDMLPARDVVSYTAIL 189

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
            G         A+  +R +     + + +T +  L A + + ++    Q+H  +LR    
Sbjct: 190 SGYTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELP 249

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
               L  +L+D+Y+K G+++ +++VFD M  R + SWNA++ G  +  LA E V LF+ M
Sbjct: 250 FFMALQNSLIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSM 309

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEG-DKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
             E   KP+ VT+L  L+   H G   EG D     ++E+   +N      VID+  + G
Sbjct: 310 CDE--VKPDSVTLLAVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSG 367

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            L KA  + + +  + +   W +++ A  VH +
Sbjct: 368 QLQKALNLIEKMPFQPTRAIWGSLLGACRVHTN 400



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 129/273 (47%), Gaps = 23/273 (8%)

Query: 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           A+  C    AL E  Q+H+ ++  G+     L T L+ +YA+ G +  A+ V D M  R+
Sbjct: 41  AITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERN 100

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           + SW A+I+G +Q     +A +LF  M   G+ +  +V                     H
Sbjct: 101 VVSWTAMISGYSQNERPDQAWELFIMMLRAGIHQVKQV---------------------H 139

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            +  +   ++++ V ++++DMYAK   + +A  VFD +  R  +V++  ++  +   G  
Sbjct: 140 AFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPAR-DVVSYTAILSGYTQLGLD 198

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             AL+LF  +   G++ + V++ A L A +    +D G ++   +    +   M    S+
Sbjct: 199 EEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSL 258

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           +D+  + G+L  +  +  S+   + +V W  +L
Sbjct: 259 IDMYSKCGKLLYSRRVFDSMPERS-VVSWNAML 290


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/430 (42%), Positives = 277/430 (64%), Gaps = 8/430 (1%)

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           ++  K +F +MG + + SWN +I    +  +  EAV+L+ RM+ +G F+P+ V++   L 
Sbjct: 259 VMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADG-FEPDAVSITSVLP 317

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           ACG   A   G KIH YI  ++L  N+++ NA+IDMYAKCG L+KA +VF+N+K R  +V
Sbjct: 318 ACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSR-DVV 376

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W  M+ A+   G G  A+ LF ++  +G+ PD ++++  L AC+HAGL+++G   F  M
Sbjct: 377 SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 436

Query: 339 AN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
            +   + P ++H   +VDLLGRAG+++EA   ++ +SM  +  +W  LLGAC+++ D ++
Sbjct: 437 TDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
             +A+ KL ++     G +VLLSN+YA   RW++V  +R  MK++ +KK PG S +EV  
Sbjct: 497 GLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR 556

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
           +IH F   D+SH +  EIY +LD ++ K+KE GY   +   LHD+ EE+KE  L  HSEK
Sbjct: 557 IIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEK 616

Query: 518 LAVAFGLISTSEA-----TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
           LA+ F L++T E       +I++ KNLRIC DCH   KLIS++ +REII+RD  RFH F+
Sbjct: 617 LAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 676

Query: 573 DGACSCKDYW 582
            G CSC DYW
Sbjct: 677 FGVCSCGDYW 686



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 152/343 (44%), Gaps = 36/343 (10%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           A + L ++A A  +F +I   +    N ++R   ++      V  +  M   + R D  T
Sbjct: 83  AYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYT 142

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
               LKAC+    +    +IH    + G  +   +G  L+ +Y K G +  A+ V DEM 
Sbjct: 143 FPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMS 202

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            RD+ SWN+L+ G AQ     +A+++ +  +ME V   ++   + +L             
Sbjct: 203 RRDVVSWNSLVVGYAQNQRFDDALEVCR--EMESVKISHDAGTMASLLPA---------- 250

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +     E     NV+    V DM+ K G              +KSLV+WN M+  +  +
Sbjct: 251 -VSNTTTE-----NVMY---VKDMFFKMG--------------KKSLVSWNVMIGVYMKN 287

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
                A+EL+ +M   G +PD VS  + L AC     +  G ++   +    + PN+   
Sbjct: 288 AMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 347

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            +++D+  + G L++A D+ +++    D+V W  ++ A    G
Sbjct: 348 NALIDMYAKCGCLEKARDVFENMK-SRDVVSWTAMISAYGFSG 389



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 133/289 (46%), Gaps = 5/289 (1%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           Y   +F ++   S   +N ++     ++ P  AV  Y +M       DA++ +  L AC 
Sbjct: 261 YVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACG 320

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
              AL    +IH ++ R   + + LL   L+D+YAK G +  A+ VF+ M  RD+ SW A
Sbjct: 321 DTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTA 380

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I+         +AV LF +++  G+  P+ +  +  LAAC H G  +EG    + + + 
Sbjct: 381 MISAYGFSGRGCDAVALFSKLQDSGLV-PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439

Query: 240 -RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            ++   +     ++D+  + G + +A+    ++    +   W  ++ A  VH D    L 
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499

Query: 299 LFEQMGRAGVKPDDVSYLAALCAC-NHAGLVDDGVRLFNSMANCGVKPN 346
             +++ +  + P+   Y   L      AG  ++   + N M + G+K N
Sbjct: 500 AADKLFQ--LAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN 546



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 2/182 (1%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +HS ++      ++ LG  L+  YA + ++ SA+KVFDE+  R++   N +I        
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             E V +F  M    V +P+  T    L AC   G    G KIH    +  L   + V N
Sbjct: 121 YGEGVKVFGTMCGCNV-RPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGN 179

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
            ++ MY KCG L +A  V D +  R+ +V+WN++V+ +A +     ALE+  +M    + 
Sbjct: 180 GLVSMYGKCGFLSEARLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 310 PD 311
            D
Sbjct: 239 HD 240


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/550 (36%), Positives = 315/550 (57%), Gaps = 33/550 (6%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF ++   +T  +  ++ G A + +   A++  + + R        + + +  AC+ 
Sbjct: 371 AEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSN 430

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL    Q+HS  ++ G   ++ +   L+ +Y K   I S +++FD M V+D  S+N+ 
Sbjct: 431 IEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSF 490

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFK------------------------------PNE 210
           ++ L Q NL  EA D+F  M    V                                PN 
Sbjct: 491 MSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNP 550

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
             +   L   G+LGA + G +IH    +  +D  +VV NA++ MY KC   D + +VFD+
Sbjct: 551 PILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD-SLKVFDS 609

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
           ++ R  + TWNT++  +A HG G  A+ +++ M  AGV P++V+++  L AC+H+GLVD+
Sbjct: 610 MEER-DIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDE 668

Query: 331 GVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           G + F SM+ + G+ P ++HY  +VDLLGRAG +Q A   +  + +  D V+W  LLGAC
Sbjct: 669 GHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGAC 728

Query: 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPG 449
           +++ +VE+   A+ KL  +  +N G++V+LSN+Y++   WD+V +VRK MK R V K PG
Sbjct: 729 KIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPG 788

Query: 450 FSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKEN 509
            S++++   +H F T D+ H + + IY  L E+   +K  GY   T  VLHDI EE+KE+
Sbjct: 789 CSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKES 848

Query: 510 ALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFH 569
           +L YHSEKLAVA+GL+ T +   IQ+ KNLRIC DCH  IK +S V  REI VRD  RFH
Sbjct: 849 SLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFH 908

Query: 570 RFKDGACSCK 579
            F++G+CSC+
Sbjct: 909 HFRNGSCSCE 918



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 111/268 (41%), Gaps = 46/268 (17%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           T++L   A+ G I  AK +FD++   ++ SWNA+I G  Q  +  EA DLF RM      
Sbjct: 325 TSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFR--- 381

Query: 207 KPNEVTVLGALA-----------------------------------ACGHLGAWKEGDK 231
             N ++  G +A                                   AC ++ A + G +
Sbjct: 382 --NTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQ 439

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           +H    +     N  VCNA+I +Y K   +    ++FD +   K  V++N+ + A   + 
Sbjct: 440 VHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTV-KDTVSYNSFMSALVQNN 498

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
               A ++F  M      PD VS+   + AC  A   ++ V +F SM +    PN     
Sbjct: 499 LFDEARDVFNNMP----SPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILT 554

Query: 352 SVVDLLGRAGRLQEACDI-VKSVSMGTD 378
            ++ L G  G  Q    I   ++ +G D
Sbjct: 555 ILLGLSGNLGAPQLGQQIHTIAIKLGMD 582



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 120/232 (51%), Gaps = 13/232 (5%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAK-VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           IH  V + GF  D ++GT +L+ Y K V  + SA K F+ M  R+  +W+ +IA L+Q  
Sbjct: 245 IHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAG 304

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK-EGDKIHEYIREERLDMNVVV 247
              +A  +++R  ++ V  P+  ++L  LA  G +   K   D+IHE         NVV 
Sbjct: 305 RIDDAFAVYQRDPLKSV--PSRTSMLTGLARYGRIDDAKILFDQIHE--------PNVVS 354

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
            NA+I  Y +  ++D+A ++F+ +  R + ++W  M+  +A +G   +AL   + + R G
Sbjct: 355 WNAMITGYMQNEMVDEAEDLFNRMPFRNT-ISWAGMIAGYARNGRSEQALVSLQALHRKG 413

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           + P   S  ++  AC++   ++ G ++ +     G + N     +++ L G+
Sbjct: 414 MLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGK 465



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 135/338 (39%), Gaps = 78/338 (23%)

Query: 140 LADAL------LGTTLLDVYAKVGEIVSAKKVFDEMGV---------------------- 171
           LADA+       GT LL  YA+ G +  A++VFD MGV                      
Sbjct: 86  LADAISGGNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLA 145

Query: 172 ---------RDIASWNALIAGLAQGNLASEAVDLFKRM-KMEGV---------------- 205
                    RD++SWN ++ G     L  EA +LF+RM +  GV                
Sbjct: 146 RKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHG 205

Query: 206 -------------FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252
                          P +  ++  L+A  HLG     + IH  + +   + +VVV  A++
Sbjct: 206 RAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAIL 265

Query: 253 DMYAK-CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           + Y K   +LD A + F+ +  R    TW+T++ A +  G    A  ++++     V P 
Sbjct: 266 NGYTKDVNMLDSAVKFFEGMAARNEY-TWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PS 323

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
             S L  L      G +DD   LF+ +     +PN+  + +++    +   + EA D+  
Sbjct: 324 RTSMLTGLA---RYGRIDDAKILFDQIH----EPNVVSWNAMITGYMQNEMVDEAEDLFN 376

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            +    + + W  ++      G  E A ++ + L   G
Sbjct: 377 RMPF-RNTISWAGMIAGYARNGRSEQALVSLQALHRKG 413



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 131/327 (40%), Gaps = 22/327 (6%)

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
            ++G +  A++VFD M  RDI +WN++I       +         R   + +   N  T 
Sbjct: 44  GRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAG-----RSLADAISGGNLRTG 98

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
              L+     G  ++  ++ + +       N V  NA++  Y + G +  A ++FD +  
Sbjct: 99  TILLSGYARAGRVRDARRVFDGMGVR----NTVAWNAMVTCYVQNGDITLARKLFDAMPS 154

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGV 332
           R  + +WNTM+  +        A  LFE+M  R GV       ++        G   D  
Sbjct: 155 R-DVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSW--TVMISGYVLIEQHGRAWDMF 211

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
           R          +PN+    S V  LG+ G L+    +V       D+V+   +L      
Sbjct: 212 RTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNG--YT 269

Query: 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD-VKKVPGFS 451
            DV M + A +    M + N   +  +    +   R DD      A+  RD +K VP  +
Sbjct: 270 KDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDA----FAVYQRDPLKSVPSRT 325

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEK 478
            +  G  + ++   D + + + +I+E 
Sbjct: 326 SMLTG--LARYGRIDDAKILFDQIHEP 350


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/507 (38%), Positives = 299/507 (58%), Gaps = 3/507 (0%)

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           NA++ G +H  +   A+  + ++ +     +  T +  LK+ A + A   T Q+H+  ++
Sbjct: 373 NALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVK 432

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            GF+ DA +   L+D Y K   +  A +VF+E    DI +  ++I  L+Q +    A+ L
Sbjct: 433 IGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKL 492

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           F  M  +G+ +P+   +   L AC  L A+++G ++H ++ + +   +    NA++  YA
Sbjct: 493 FMEMLRKGL-EPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYA 551

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG ++ A   F ++   + +V+W+ M+   A HG G RALELF +M   G+ P+ ++  
Sbjct: 552 KCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMT 610

Query: 317 AALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           + LCACNHAGLVD+  R FNSM    G+    +HY  ++DLLGRAG+L +A ++V S+  
Sbjct: 611 SVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPF 670

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
             +  +W  LLGA +++ D E+ ++A+ KL  +     G  VLL+N YA+   W++V +V
Sbjct: 671 QANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKV 730

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           RK MK+ ++KK P  S+IEV   +H F   DKSH   +EIY KL E+   + + G+    
Sbjct: 731 RKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNV 790

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
              LHD+   EKE  L +HSE+LAVAF L+ST     I+V KNLRICRDCH   K ISK+
Sbjct: 791 DVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKI 850

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
            +REII+RD  RFH F+DG CSC DYW
Sbjct: 851 VSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 118/236 (50%), Gaps = 2/236 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L+ A+ +F + ++       +++  L+       A+  + +MLR     D    S  L A
Sbjct: 455 LSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA + A  +  Q+H+H+++  F++DA  G  L+  YAK G I  A+  F  +  R + SW
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSW 574

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           +A+I GLAQ      A++LF RM  EG+  PN +T+   L AC H G   E  +    ++
Sbjct: 575 SAMIGGLAQHGHGKRALELFGRMVDEGI-NPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633

Query: 238 EE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           E   +D      + +ID+  + G LD A E+ +++  + +   W  ++ A  VH D
Sbjct: 634 EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKD 689



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 155/351 (44%), Gaps = 3/351 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++       +NA++ G   +     A+    QM       +  T S  LKAC+ 
Sbjct: 256 ASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSG 315

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             A     QIH  +++    +D  +G  L+D+YAK   +  A+KVFD M  RD+   NAL
Sbjct: 316 AGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNAL 375

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I+G + G    EA+ LF  ++ EG+   N  T+   L +   L A     ++H    +  
Sbjct: 376 ISGCSHGGRHDEALSLFYELRKEGL-GVNRTTLAAVLKSTASLEAASTTRQVHALAVKIG 434

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              +  V N +ID Y KC  L  A  VF+       ++   +M+ A +    G  A++LF
Sbjct: 435 FIFDAHVVNGLIDSYWKCSCLSDANRVFEECS-SGDIIACTSMITALSQCDHGEGAIKLF 493

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M R G++PD     + L AC      + G ++   +       +     ++V    + 
Sbjct: 494 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKC 553

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
           G +++A ++  S      +V W  ++G    +G  + A     ++V+ G N
Sbjct: 554 GSIEDA-ELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGIN 603



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 141/297 (47%), Gaps = 7/297 (2%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAP-STNDFNAVLRG 82
           Q+ A    TG F S +F   + +  +     +++   A  +F + ++  +   +N ++  
Sbjct: 121 QVHAMAMATG-FGSDVFVANALVAMYGGFGFMDD---ARRVFNEADSERNAVSWNGLMSA 176

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              + +  +A+  + +M+    +      S  + AC     +    Q+H+ V+R G+  D
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
                 L+D+Y K+G +  A  +F++M   D+ SWNALI+G         A++L  +MK 
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            G+  PN  T+   L AC   GA+  G +IH ++ +   D +  +   ++DMYAK   LD
Sbjct: 297 SGLV-PNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLD 355

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            A +VFD +   + L+  N ++   +  G    AL LF ++ + G+  +  +  A L
Sbjct: 356 DARKVFDWM-FHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 132/286 (46%), Gaps = 7/286 (2%)

Query: 108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD 167
           A T S  L   A   AL     +H+ +L+ G LA       L+  Y+K      A++ FD
Sbjct: 4   AGTISQQLTRYAAAQALLPGAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRFFD 61

Query: 168 EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227
           E+      SW++L+   +   L   A+  F  M+ EGV   NE   L  +  C  +   +
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC-CNEFA-LPVVLKC--VPDAR 117

Query: 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
            G ++H          +V V NA++ MY   G +D A  VF+     ++ V+WN ++ A+
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAY 177

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM 347
             +     A+++F +M  +G++P +  +   + AC  +  ++ G ++   +   G   ++
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDV 237

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
               ++VD+  + GR+  A  I + +   +D+V W  L+  C L G
Sbjct: 238 FTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNG 282


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/473 (38%), Positives = 287/473 (60%), Gaps = 5/473 (1%)

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           F        L +    ++H+ V++  +   + +GT LLD Y K+G++  A KVF  +  +
Sbjct: 2   FTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDK 61

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA-WKEGDK 231
           DI +W+A++AG AQ      A+ +F  +   G+ KPNE T    L  C    A   +G +
Sbjct: 62  DIVAWSAMLAGYAQTGETEAAIKMFGELTKGGI-KPNEFTFSSILNVCAATNASMGQGKQ 120

Query: 232 IHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
            H +  + RLD ++ V +A++ MYAK G ++ A EVF   +  K LV+WN+M+  +A HG
Sbjct: 121 FHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR-EKDLVSWNSMISGYAQHG 179

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHY 350
              +AL++F++M +  VK D V+++    AC HAGLV++G + F+ M  +C + P  +H 
Sbjct: 180 QAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN 239

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
             +VDL  RAG+L++A  +++++       +W+T+L AC+++   E+  +A+ K++ M  
Sbjct: 240 SCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKP 299

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHV 470
            +   +VLLSN+YA    W +  +VRK M  R+VKK PG+S+IEV    + F   D+SH 
Sbjct: 300 EDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHP 359

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEA 530
              +IY KL+++  ++K+ GY   TS VL DI +E KE  L  HSE+LA+AFGLI+T + 
Sbjct: 360 LKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKG 419

Query: 531 TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF-KDGACSCKDYW 582
           + + + KNLR+C DCH VIKLI+K+  REI+VRD  RFH F  DG CSC D+W
Sbjct: 420 SPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/546 (36%), Positives = 324/546 (59%), Gaps = 19/546 (3%)

Query: 42  VRSKIIEFYALSPLNE-LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL-WYRQM 99
           V   +++ YA S + + + YA+ +F ++       + A++ G   S    N V+  + +M
Sbjct: 291 VSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEM 350

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
           L  S + + +T S  LK+CA +       Q+H+HV++    +   +G  L+ +YA+ G +
Sbjct: 351 LNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCM 410

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM-KME-GVFKPNEVTVLGAL 217
             A++VF+++  R      ++I  + +G        L  R+ +M+ G+      +++ A 
Sbjct: 411 EEARRVFNQLYER------SMIPCITEG----RDFPLDHRIVRMDVGISSSTFASLISAA 460

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
           A+ G L    +G ++H    +     +  V N+++ MY++CG L+ A   F+ +K R ++
Sbjct: 461 ASVGML---TKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDR-NV 516

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           ++W +M+   A HG   RAL LF  M   GVKP+DV+Y+A L AC+H GLV +G   F S
Sbjct: 517 ISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRS 576

Query: 338 MA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
           M  + G+ P M+HY  +VDLL R+G ++EA + +  + +  D ++W+TLLGAC+ + ++E
Sbjct: 577 MQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIE 636

Query: 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
           + EI ++ +VE+   +   +VLLSNLYA    WD+V R+R AM++ ++ K  G S++EV 
Sbjct: 637 VGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVE 696

Query: 457 GVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSE 516
              H+F   D SH + ++IY KLD ++ +IK  GY   TS VLHD+ +E KE  L  HSE
Sbjct: 697 NTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSE 756

Query: 517 KLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
           K+AVAFGLI+TS    I++FKNLR+C DCH  IK +SK   REII+RD  RFHR KDG C
Sbjct: 757 KIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGEC 816

Query: 577 SCKDYW 582
           SC +YW
Sbjct: 817 SCGEYW 822



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 103/194 (53%), Gaps = 6/194 (3%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  +G+ L+D+ A+ G++ SA+KVFD +  + +  W  LI+   QG  A EAV+LF    
Sbjct: 187 DVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFL 246

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL- 260
            +G F+P+  T+   ++AC  LG+ + G ++H       L  +  V   ++DMYAK  + 
Sbjct: 247 EDG-FEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIG 305

Query: 261 --LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG-DGPRALELFEQMGRAGVKPDDVSYLA 317
             +D A +VF+ +  +  +++W  ++  +   G    + + LF +M    +KP+ ++Y +
Sbjct: 306 QAMDYANKVFERMP-KNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSS 364

Query: 318 ALCACNHAGLVDDG 331
            L +C      D G
Sbjct: 365 ILKSCASISDHDSG 378



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 129/264 (48%), Gaps = 10/264 (3%)

Query: 130 IHSHVLRHGFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEM-GVRDIASWNALIAGLAQG 187
           +H  +LR   L  DA++  +LL +Y++ G + SA+ VFD M G+RDI SW A+ + LA+ 
Sbjct: 70  LHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARN 129

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC--GHLGAWKEGDKIHEYIREERLDMNV 245
                ++ L   M   G+  PN  T+  A  AC    L     G  +    +      +V
Sbjct: 130 GAERGSLLLIGEMLESGLL-PNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDV 188

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD-GPRALELFEQMG 304
            V +A+IDM A+ G L  A +VFD +   K++V W T++++  V G+    A+ELF    
Sbjct: 189 AVGSALIDMLARNGDLASARKVFDGL-IEKTVVVW-TLLISRYVQGECAEEAVELFLDFL 246

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA--GR 362
             G +PD  +  + + AC   G V  G++L +     G+  +      +VD+  ++  G+
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQ 306

Query: 363 LQEACDIVKSVSMGTDMVLWQTLL 386
             +  + V       D++ W  L+
Sbjct: 307 AMDYANKVFERMPKNDVISWTALI 330



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 224 GAWKEGDKIHE-YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           G  + G  +H   +R + LD + VV N+++ +Y++CG +  A  VFD ++  + +V+W  
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
           M    A +G    +L L  +M  +G+ P+  +  AA  AC
Sbjct: 122 MASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHAC 161


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/506 (38%), Positives = 307/506 (60%), Gaps = 10/506 (1%)

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
           G + +  P  A+L Y +M+    +      S ALKAC+ +  L     +H+ VL+     
Sbjct: 152 GYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDP 211

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D ++   LL +Y++ G    A +VFD M  R++ SWN+LIAGL + +   EA++ F+ M+
Sbjct: 212 DQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQ 271

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            +G+   + VT+   L  C  + A   G +IH  I +     +  V N+++DMYAKCG +
Sbjct: 272 GKGM-GFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAM 330

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           D    VF+ ++  K L +WNT++  +A++G    A+E F++M  +G  PD ++++A L  
Sbjct: 331 DYCRRVFNGMQ-GKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSG 389

Query: 322 CNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C+HAGL DDG RLF  M  + G+ P ++HY  +VD+LGRAGR++EA +IVK++       
Sbjct: 390 CSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGS 449

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +W +LL +C+L+G+V +AE  +++L E+  NN G++V+LSN+YA    W+ V  VR+ M+
Sbjct: 450 IWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWESVKVVREFME 509

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSD----KSHVKWREIYEKLDEIMFKIKEYGYAAGTS 496
            R + K  G S++++   IH F        ++ V++++++++L E M   +E GY   T 
Sbjct: 510 KRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLMEAM---EEVGYVPDTG 566

Query: 497 CVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVY 556
            VLHD+ EE +   +C HSE+LA  F LI+T+    I++ KNLR+C DCH  +K +SKV 
Sbjct: 567 VVLHDVSEEMRAMWVCGHSERLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVT 626

Query: 557 NREIIVRDRVRFHRFKDGACSCKDYW 582
            R I++RD  RFH FKDG CSCKDYW
Sbjct: 627 GRVIVLRDTNRFHHFKDGVCSCKDYW 652



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 114/222 (51%), Gaps = 2/222 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N+++ GL        A+  +R M         +T +  L  CARV AL    +IH+ ++
Sbjct: 247 WNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIV 306

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           +     DA +  +L+D+YAK G +   ++VF+ M  +D+ SWN LI G A     +EA++
Sbjct: 307 KSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAME 366

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDM 254
            F+ M   G F P+ +T +  L+ C H G   +G ++ E ++ +  +   V     ++D+
Sbjct: 367 SFQEMICSG-FSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDV 425

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
             + G + +A E+  N+  + +   W +++ +  +HG+ P A
Sbjct: 426 LGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLA 467


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/539 (37%), Positives = 312/539 (57%), Gaps = 34/539 (6%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++            ++   +ML+   R D +T    + ACA++  L      H++V 
Sbjct: 292 YNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVF 351

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA---------- 185
           R+G      +   ++D+Y K G+  +A KVFD M  + + +WN+LIAGL           
Sbjct: 352 RNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALR 411

Query: 186 ---------------------QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
                                Q ++  EA+DL + M+ +G+ K + VT++G  +ACG+LG
Sbjct: 412 IFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGI-KGDRVTMVGIASACGYLG 470

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A      I+ YI +  + +++ +  A++DM+++CG    A  VF+N++ ++ +  W   +
Sbjct: 471 ALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENME-KRDVSAWTAAI 529

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GV 343
              AV G+   A+ELF++M +  VK DD  ++A L A +H G VD G +LF +M    GV
Sbjct: 530 RVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGV 589

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
            P + HYG +VDLLGRAG L+EA D++KS+ +  + V+W + L AC+ + +VE A  A  
Sbjct: 590 SPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADE 649

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
           K+ ++     G  VLLSN+YA+  +W+DV RVR  MK +  +KV G S IEV G+I +F 
Sbjct: 650 KITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFT 709

Query: 464 TSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFG 523
           + D+SH +  +I   L EI  +I + GY   T+ VL D+ E+EKE+ L  HSEKLA+A+G
Sbjct: 710 SGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYG 769

Query: 524 LISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LI+T +   I+V KNLR+C DCH   KL+SK+Y REI VRD  R+H FK+G CSC+D+W
Sbjct: 770 LINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 223/455 (49%), Gaps = 41/455 (9%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           N+ LQ C +      I +KQL  ++   G     +F +   I     +     L YA   
Sbjct: 26  NSSLQTCKT-----LIELKQLHCNMLKKG-----VFNINKLIAACVQMGTHESLNYALNA 75

Query: 65  FRQINAPSTNDF--NAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKACARV 121
           F++      + +  N ++RG A S     A+  Y  M+       D  T  F L AC+++
Sbjct: 76  FKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKI 135

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
           +A  E +Q+H  V++ G + D  +  +L+  YA  G++   +KVFDEM  R++ SW +LI
Sbjct: 136 MAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLI 195

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            G +  N+A EAV LF  M   GV +PN VT++ A++AC  L   + G K+   + E  +
Sbjct: 196 NGYSVVNMAKEAVCLFFEMVEVGV-EPNPVTMVCAISACAKLKDLELGKKVCNLMTELGV 254

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
             N +V NA++DMY KCG +    E+FD     K+LV +NT++  +  HG     L + +
Sbjct: 255 KSNTLVVNALLDMYMKCGDMYAVREIFDEFS-DKNLVMYNTIMSNYVQHGLAGEVLVVLD 313

Query: 302 QMGRAGVKPDDVSYLAALCAC-----------NHAGLVDDGVRLFNSMANCGVKPNMKHY 350
           +M + G +PD V+ L+ + AC           +HA +  +G+   ++++N          
Sbjct: 314 EMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISN---------- 363

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410
            +++D+  + G+ + AC +  S+S  T +V W +L+      G++E+   A R   EM  
Sbjct: 364 -AIIDMYMKCGKREAACKVFDSMSNKT-VVTWNSLIAGLVRDGELEL---ALRIFGEMPE 418

Query: 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           +N   +  +         +++   + + M+N+ +K
Sbjct: 419 SNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIK 453



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 116/235 (49%), Gaps = 2/235 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           EL  A  +F ++   +   +N ++  +  +S    A+   R+M     + D +T      
Sbjct: 405 ELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIAS 464

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC  + AL     I++++ ++    D  LGT L+D++++ G+ ++A +VF+ M  RD+++
Sbjct: 465 ACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSA 524

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W A I   A    A  A++LF  M  + V K ++   +  L A  H G   +G ++   +
Sbjct: 525 WTAAIRVKAVEGNAKGAIELFDEMLKQDV-KADDFVFVALLTAFSHGGYVDQGRQLFWAM 583

Query: 237 RE-ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +   +   +V    ++D+  + GLL++AF++  ++  + + V W + + A   H
Sbjct: 584 EKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKH 638


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 317/560 (56%), Gaps = 6/560 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +++  HL ++ +F+   F + + +I  Y       +  AH +F ++       + +++ G
Sbjct: 71  RKIHGHLASS-RFEGDAF-LDNSLIHLYC--KCGSVVEAHKVFDKMRKKDMVSWTSLIAG 126

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A +  P  A+     ML+G  + +  T +  LKA           QIH+  ++  +  D
Sbjct: 127 YAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHED 186

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G+ LLD+YA+ G++  A  VFD++  ++  SWNALI+G A+      A+ +F  M+ 
Sbjct: 187 VYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQR 246

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            G F+    T     +    +GA ++G  +H ++ + R  +   V N ++DMYAK G + 
Sbjct: 247 NG-FEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMI 305

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A +VF+ +   K LVTWN+M+ AFA +G G  A+  FE+M ++G+  + +++L  L AC
Sbjct: 306 DARKVFERV-LNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTAC 364

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           +H GLV +G   F+ +    ++P ++HY +VVDLLGRAG L  A   +  + M     +W
Sbjct: 365 SHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVW 424

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
             LL AC+++ + ++ + A+  + ++  ++ G  VLL N+YA+   WD   RVRK MK  
Sbjct: 425 GALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKAT 484

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            VKK P  S++E+G  +H F  +D +H +  EIY+  DEI  KI++ GY      VL  +
Sbjct: 485 GVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHV 544

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            E+E+E  L YHSEK+A+AF LI      +I++ KN+RIC DCH   K ISKV+ REI+V
Sbjct: 545 DEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVV 604

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFH F +G+CSC DYW
Sbjct: 605 RDTNRFHHFSNGSCSCGDYW 624



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 146/279 (52%), Gaps = 3/279 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           + ACA+   L +  +IH H+    F  DA L  +L+ +Y K G +V A KVFD+M  +D+
Sbjct: 58  ITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDM 117

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW +LIAG AQ ++ +EA+ L   M ++G FKPN  T    L A G       G +IH 
Sbjct: 118 VSWTSLIAGYAQNDMPAEAIGLLPGM-LKGRFKPNGFTFASLLKAAGAYADSGIGGQIHA 176

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +     +V V +A++DMYA+CG +D A  VFD +   K+ V+WN ++  FA  GDG 
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDS-KNGVSWNALISGFARKGDGE 235

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            AL +F +M R G +    +Y +        G ++ G  +   M     K       +++
Sbjct: 236 TALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTML 295

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           D+  ++G + +A  + + V +  D+V W ++L A   YG
Sbjct: 296 DMYAKSGSMIDARKVFERV-LNKDLVTWNSMLTAFAQYG 333


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/530 (36%), Positives = 321/530 (60%), Gaps = 5/530 (0%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           +  L  A  LF ++   +   +NA++ GL        A+L + +M   S   D  +    
Sbjct: 148 MGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSV 207

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ CA + AL    Q+H++V++ GF  + ++G +L  +Y K G +   ++V + M    +
Sbjct: 208 LRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSL 267

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            +WN L++G AQ       +D +  MKM G F+P+++T +  +++C  L    +G +IH 
Sbjct: 268 VAWNTLMSGKAQKGYFEGVLDQYCMMKMAG-FRPDKITFVSVISSCSELAILCQGKQIHA 326

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDG 293
              +      V V ++++ MY++CG L  + + F  ++C+ + +V W++M+ A+  HG G
Sbjct: 327 EAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTF--LECKERDVVLWSSMIAAYGFHGQG 384

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGS 352
             A++LF +M +  +  +++++L+ L AC+H GL D G+ LF+ M    G+K  ++HY  
Sbjct: 385 EEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTC 444

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           +VDLLGR+G L+EA  +++S+ +  D ++W+TLL AC+++ + E+A   + +++ +   +
Sbjct: 445 LVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQD 504

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW 472
              +VLL+N+Y++  RW +V  VR+AMK++ VKK PG S++EV   +H+F   D+ H K 
Sbjct: 505 SASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKH 564

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
            EI + L+E+  +IK  GY   TS VLHD+  EEKE  L +HSEKLA+AF L++T E   
Sbjct: 565 VEINQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVP 624

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           I+V KNLR+C DCH  IK IS++   EIIVRD  RFH FK+G CSC DYW
Sbjct: 625 IRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 159/344 (46%), Gaps = 41/344 (11%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV-------------- 160
           L+AC  + ++    Q+HS +   G  +D  +   LL++Y+K GE+               
Sbjct: 76  LQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNI 135

Query: 161 -----------------SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
                            SAK +FDEM  R++A+WNA++ GL +  +  EA+ LF RM  E
Sbjct: 136 MSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMN-E 194

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
             F P+E ++   L  C HLGA   G ++H Y+ +   + N+VV  ++  MY K G +  
Sbjct: 195 LSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHD 254

Query: 264 AFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
              V + +  C  SLV WNT++   A  G     L+ +  M  AG +PD +++++ + +C
Sbjct: 255 GERVINWMPDC--SLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSC 312

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           +   ++  G ++       G    +    S+V +  R G LQ++           D+VLW
Sbjct: 313 SELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECK-ERDVVLW 371

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNC--GDFVLLSNLYA 424
            +++ A   YG     E A +   EM   N    +   LS LYA
Sbjct: 372 SSMIAA---YGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYA 412


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 214/606 (35%), Positives = 332/606 (54%), Gaps = 29/606 (4%)

Query: 3   NLNALLQKCSSNGAVS---HIHIKQLQAHLTTTGQFQSKLFPVRSKI-------IEFYAL 52
            L  +L+  SSNG VS    IH + ++    +     S L  + SK+         FY L
Sbjct: 138 TLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGL 197

Query: 53  SPLNELAY---------------AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYR 97
              N + Y               A  LFR +   S + ++A+++GLA +     A+  +R
Sbjct: 198 DDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVS-WSAMIKGLAQNGMEKEAIECFR 256

Query: 98  QMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157
           +M     + D       L AC  + A+ +  QIH+ ++R        +G+ L+D+Y K  
Sbjct: 257 EMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCK 316

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
            +  AK VFD M  +++ SW A++ G  Q   A EAV +F  M+  G+  P+  T+  A+
Sbjct: 317 CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGI-DPDHYTLGQAI 375

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
           +AC ++ + +EG + H       L   + V N+++ +Y KCG +D +  +F+ +  R   
Sbjct: 376 SACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDE- 434

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           V+W  MV A+A  G    A++LF++M + G+KPD V+    + AC+ AGLV+ G R F  
Sbjct: 435 VSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFEL 494

Query: 338 MAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
           M N  G+ P+  HY  ++DL  R+GR++EA   +  +    D + W TLL AC+  G++E
Sbjct: 495 MINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLE 554

Query: 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
           + + A+  L+E+  ++   + LLS++YA+  +WD V ++R+ MK ++V+K PG S+I+  
Sbjct: 555 IGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWK 614

Query: 457 GVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSE 516
           G +H F   D+S     +IY KL+E+  KI + GY   TS V HD+ E  K   L  HSE
Sbjct: 615 GKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNCHSE 674

Query: 517 KLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
           +LA+AFGLI       I+V KNLR+C DCH+  K IS V  REI+VRD VRFHRFKDG C
Sbjct: 675 RLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTC 734

Query: 577 SCKDYW 582
           SC D+W
Sbjct: 735 SCGDFW 740



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
             LL  Y+K G +   ++ F+++  RD  +WN LI G +   L   AV  +  M  +   
Sbjct: 73  NNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSS 132

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
               VT++  L      G    G +IH  + +   +  ++V + ++DMY+K G +  A +
Sbjct: 133 NLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKK 192

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF  +  R + V +NT++      G    AL+LF      G++ D VS+ A +      G
Sbjct: 193 VFYGLDDRNT-VMYNTLMGGLLACGMIEDALQLFR-----GMEKDSVSWSAMIKGLAQNG 246

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           +  + +  F  M   G+K +   +GSV+   G  G + +   I
Sbjct: 247 MEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQI 289


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/559 (35%), Positives = 321/559 (57%), Gaps = 6/559 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           + + AHL  + QF   +F + + +I  Y       +A A  +F  + A     + +++ G
Sbjct: 84  RAIHAHLAGS-QFAGSVF-LDNSLIHLYC--KCGAVADARRVFDGMPARDMCSWTSLIAG 139

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A +  P  A+     MLRG  + +  T +  LKA     +     QIH+  +++ +  D
Sbjct: 140 YAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDD 199

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G+ LLD+YA+ G +  A  VFD++  ++  SWNALIAG A+       + +F  M+ 
Sbjct: 200 VYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQR 259

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            G F+    T     +A   +GA ++G  +H ++ +    ++  V N ++DMYAK G + 
Sbjct: 260 NG-FEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMI 318

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A +VFD +  +K +VTWN+M+ AFA +G G  A+  FE+M + GV  + +++L+ L AC
Sbjct: 319 DARKVFDRVD-KKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTAC 377

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           +H GLV +G + F+ M    ++P + HY +VVDLLGRAG L +A   +  + M     +W
Sbjct: 378 SHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVW 437

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
             LLG+C+++ + ++ + A+  + E+  ++ G  VLL N+YA+  +WD   RVRK MK  
Sbjct: 438 GALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKAT 497

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            VKK P  S++E+   +H F  +D +H +  EIY+K +EI  +I++ GY   T  VL  +
Sbjct: 498 GVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHV 557

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            E+E++  L YHSEK+A+AF LI+     +I++ KN+RIC DCH   + ISKV+ REI+V
Sbjct: 558 DEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVV 617

Query: 563 RDRVRFHRFKDGACSCKDY 581
           RD  RFH F  G+CSC DY
Sbjct: 618 RDTNRFHHFSSGSCSCGDY 636



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 145/279 (51%), Gaps = 3/279 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           + ACAR  +L +   IH+H+    F     L  +L+ +Y K G +  A++VFD M  RD+
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW +LIAG AQ ++  EA+ L   M + G FKPN  T    L A G   +   G++IH 
Sbjct: 131 CSWTSLIAGYAQNDMPDEALGLLPGM-LRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +     +V V +A++DMYA+CG +D A  VFD ++  K+ V+WN ++  FA  GDG 
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLES-KNGVSWNALIAGFARKGDGE 248

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
             L +F +M R G +    +Y +   A    G ++ G  +   M   G + +     +++
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           D+  ++G + +A  +   V    D+V W ++L A   YG
Sbjct: 309 DMYAKSGSMIDARKVFDRVDK-KDVVTWNSMLTAFAQYG 346


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 191/551 (34%), Positives = 317/551 (57%), Gaps = 5/551 (0%)

Query: 33  GQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNA 92
           G F+  +F V + +++ Y  S    +  A  LF  ++  +   +NA++ G +       A
Sbjct: 151 GGFEGNVF-VETALVDMY--SKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEA 207

Query: 93  VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV 152
           +  +  M R     D  T    + A   V  L     IH  ++R G+  D  + T L+D+
Sbjct: 208 IDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDI 267

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           Y     +  A +VF EM V+D+A+W  ++ G + G     A+  F +M      K + + 
Sbjct: 268 YVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIA 327

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           ++G L++C H GA ++G ++H    +     N+ V +AVIDMYA CG L+ A   F  + 
Sbjct: 328 LMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMG 387

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K +V WN M+    ++G G  A++LF QM  +G+ PD+ ++++ L AC+HAG+V +G+
Sbjct: 388 -EKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGL 446

Query: 333 RLFNSMANCG-VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           ++F  M     V PN++HY  V+D+LGRAG+L  A   + ++    D  ++ TLLGAC++
Sbjct: 447 QIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRI 506

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           +G++++    S+K+ EM  N+ G +VLLSN+YA    W+ V   R +++++ +KK PGFS
Sbjct: 507 HGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFS 566

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
            IE+   I+ F   +K H ++ +I   L  ++ KIK+ GY   T+ +L D+ ++ K++ L
Sbjct: 567 SIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDIL 626

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
            +HSEK+A+AFGL+ T   T I++ KNLR C DCH   K +SKV+ R ++++D  RFH F
Sbjct: 627 YHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVF 686

Query: 572 KDGACSCKDYW 582
           +DG CSC+DYW
Sbjct: 687 QDGVCSCRDYW 697



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 181/374 (48%), Gaps = 10/374 (2%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           ++Q+ A + T+G   +    + + ++  Y    L  LA A  +F      +   +  ++ 
Sbjct: 40  LQQIHAQIITSGLTHNTF--LSNSLMNAYVYCGL--LADAKQIFHHTPYKNVVSWTILIS 95

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
           GLA +     A+  +R+M+ G+ + +A+T S  L A A +  +     +H   +R GF  
Sbjct: 96  GLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEG 155

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           +  + T L+D+Y+K G +  A+++F+ M  R++ +WNA+++G +    + EA+DLF  M+
Sbjct: 156 NVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMR 215

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            +G+   +  T++  + A   +G  + G  IH +I     + +  +  A++D+Y     +
Sbjct: 216 RKGLLV-DFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCV 274

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALC 320
           D A  VF  +   K +  W  M+  F+      RA++ F +M G   +K D ++ +  L 
Sbjct: 275 DDAHRVFSEMSV-KDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILS 333

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG-TDM 379
           +C+H+G +  G R+           N+    +V+D+    G L++A        MG  D+
Sbjct: 334 SCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFF--YGMGEKDV 391

Query: 380 VLWQTLLGACQLYG 393
           V W  ++    + G
Sbjct: 392 VCWNAMIAGNGMNG 405


>gi|413938369|gb|AFW72920.1| hypothetical protein ZEAMMB73_491813 [Zea mays]
          Length = 625

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 196/531 (36%), Positives = 317/531 (59%), Gaps = 13/531 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSS------KPTNAVLWYRQMLRGSHRSDALTCSFA 114
           A ++F  +  P   D+N ++RG  H S       P  A+  Y   L      D+ T  F 
Sbjct: 99  AASIFESLVEPEAFDYNTLMRG--HVSGGGGDRDPAAALRLYIDGLEAGVSPDSYTFPFV 156

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD--EMGVR 172
           LKACA++ AL E  Q+ +H+++ GF  D  +  +L+  Y K G    A+  FD  E   R
Sbjct: 157 LKACAQLAALQEGRQLQAHIVKLGFQHDEHVQNSLISFYGKCGAPAMARLAFDRVEAEER 216

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
              SW+AL+A   +  L  E +  F  M ++G ++P+E +++ AL+AC HLG++  G  +
Sbjct: 217 TTVSWSALLAAYTKAGLWGECLASFGSMMLDG-WRPDESSMVSALSACAHLGSFDAGRSV 275

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H  +      +N ++  +++DMYAKCG ++KA   FD +   KS   ++ M+   A+HGD
Sbjct: 276 HCALLRNTARLNTIMLTSLLDMYAKCGSIEKAAAAFDAMD-DKSAWAYSAMLSGLALHGD 334

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYG 351
           G +AL++F+ M R G  PD  +Y+  L AC+ AGL++DG+R F+ M     V PN  HYG
Sbjct: 335 GRKALQVFDAMVREGHAPDAAAYVGVLNACSRAGLLEDGLRCFDRMRLEHKVAPNALHYG 394

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            +VDL+ RAGRL +A  ++ ++  G     W++LL AC+++GD+++A  A ++L  +G+ 
Sbjct: 395 CMVDLMARAGRLDDARALIGTMPTGPTDTAWRSLLNACRIHGDLDLAWHALQELRRLGAA 454

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           N GD+V++++++A  + W     +R    +  + +  GFS +EV G +H+F + D +H +
Sbjct: 455 NAGDYVIVADMHARAKNWTAAAALRTEAVDSGLAQSLGFSAVEVRGELHRFVSQDMAHPR 514

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
            R+IYE L ++ ++++  GY   TS V  D GEEEK   +  HS+KLA+AFGL+ST E  
Sbjct: 515 TRDIYEMLHQMEWQLRFDGYKPDTSEVALDAGEEEKGRVVAAHSQKLAMAFGLLSTPEGA 574

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            ++V  NLR+ ++CH    LIS+++ R+I++RDR R HRF+ G CSC+DYW
Sbjct: 575 PVRVVTNLRMSKECHAYSALISEIFGRDIVIRDRNRLHRFRCGTCSCRDYW 625


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 181/435 (41%), Positives = 283/435 (65%), Gaps = 3/435 (0%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           +L  Y K GE+  AK++F EM  RD  SW+ +I G +     +E+   F+ + +    +P
Sbjct: 376 MLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFREL-LRAEMRP 434

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           NEV++ G L+AC   GA++ G  +H ++ +      V V NA+IDMY++CG +  A  VF
Sbjct: 435 NEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVF 494

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
           + ++ ++S+V+W +M+   A+HG G  A+ +F +M  +GV PD++S+++ L AC+HAGL+
Sbjct: 495 EGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLI 554

Query: 329 DDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
            +G   F+ M     ++P ++HYG +VDL GR+G+LQ+A   +  + +    ++W+TLLG
Sbjct: 555 KEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLG 614

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           AC  +G++E+AE   ++L E+  NN GD VLLSN+YA   +W DV  +RK+M  + +KK+
Sbjct: 615 ACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKI 674

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLHDIGEEE 506
             +S +EVG  ++KF   +K      E +EKL EI+ +++ E GYA   +  L+D+ EEE
Sbjct: 675 TAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPEVASALYDVEEEE 734

Query: 507 KENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRV 566
           KE+ +  HSEKLA+AF L    +  +I++ KNLRICRDCH V+KL S+VY  EI++RDR 
Sbjct: 735 KEDQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVEIVIRDRN 794

Query: 567 RFHRFKDGACSCKDY 581
           RFH FKDG+CSC DY
Sbjct: 795 RFHSFKDGSCSCGDY 809


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 200/577 (34%), Positives = 327/577 (56%), Gaps = 9/577 (1%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +L+ C+  G    I + +    L+    F+S ++ V   +I+ Y  S    L  A  +  
Sbjct: 352 ILRTCTCTG---QIELGEQIHSLSIKNGFESDMY-VSGVLIDMY--SKYGCLDKARKILE 405

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            +       + +++ G         A+  +++M       D +  + A  ACA + A+ +
Sbjct: 406 MLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQ 465

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
            LQIH+ V   G+ AD  +  TL+++YA+ G    A  +F E+  +D  +WN LI+G  Q
Sbjct: 466 GLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQ 525

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
             L  +A+ +F +M   G  K N  T + A++A  +L   K+G ++H    +        
Sbjct: 526 SRLYKQALMVFMKMGQAGA-KYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETE 584

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V NA+I +Y KCG ++ A  +F  +  R   V+WNT++ + + HG G  AL+LF+QM + 
Sbjct: 585 VANALISLYGKCGSIEDAKMIFSEMSLRNE-VSWNTIITSCSQHGRGLEALDLFDQMKQE 643

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQE 365
           G+KP+DV+++  L AC+H GLV++G+  F SM+N  G+ P   HY  VVD+LGRAG+L  
Sbjct: 644 GLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDR 703

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A   V  + +  + ++W+TLL AC+++ ++E+ E+A++ L+E+  ++   +VLLSN YA 
Sbjct: 704 ARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAV 763

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
             +W +  +VRK MK+R ++K PG S+IEV   +H FF  D+ H    +IY+ L E+  +
Sbjct: 764 TGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDR 823

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           + + GY      + H+  +E+K+     HSEKLAVAFGL++      ++V KNLR+C DC
Sbjct: 824 LSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDC 883

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H  +K  S+V  REI++RD  RFH F  G+CSC DYW
Sbjct: 884 HSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 164/325 (50%), Gaps = 6/325 (1%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           FN ++ G A       A+  + +M     R D +T +  L ACA V  L +  Q+HS++L
Sbjct: 213 FNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLL 272

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + G   D +   +LLD+Y K G+I +A  +F+     ++  WN ++    Q +  +++ +
Sbjct: 273 KAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFE 332

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +F +M+  G+  PN+ T    L  C   G  + G++IH    +   + ++ V   +IDMY
Sbjct: 333 IFGQMQATGI-HPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMY 391

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +K G LDKA ++ + ++ ++ +V+W +M+  +  H     AL  F++M   GV PD++  
Sbjct: 392 SKYGCLDKARKILEMLE-KRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGL 450

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
            +A  AC     +  G+++   +   G   ++  + ++V+L  R GR +EA  + + +  
Sbjct: 451 ASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEH 510

Query: 376 GTDMVLWQTLL---GACQLYGDVEM 397
             D + W  L+   G  +LY    M
Sbjct: 511 -KDEITWNGLISGFGQSRLYKQALM 534



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 153/292 (52%), Gaps = 11/292 (3%)

Query: 106 SDALTCSFALKAC-ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           S  LTC  AL+AC  R       L+IH+  +  G  AD L+G  L+D+YAK G +  A++
Sbjct: 42  SADLTC--ALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQ 99

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VF E+  RD  SW A+++G AQ  L  EA  L+ +M    V  P    +   L+AC    
Sbjct: 100 VFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVI-PTPYVLSSVLSACTKGK 158

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF-DNIKCRKSLVTWNTM 283
            + +G  IH  + ++       V NA+I +Y   G    A  VF D + C +  VT+NT+
Sbjct: 159 LFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDR--VTFNTL 216

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +   A  G G  AL++F++M  +G++PD V+  + L AC   G +  G +L + +   G+
Sbjct: 217 ISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGM 276

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395
             +    GS++DL  + G ++ A DI  ++   T++VLW  +L A   YG +
Sbjct: 277 SFDYITEGSLLDLYVKCGDIETAHDIF-NLGDRTNVVLWNLMLVA---YGQI 324


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/529 (38%), Positives = 306/529 (57%), Gaps = 35/529 (6%)

Query: 89  PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD-ALLGT 147
           P  A+  +  +LR     D      A  +CAR        Q+H+H  + G +A    +  
Sbjct: 56  PHLALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVRC 115

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ------------GNLAS---- 191
            L+  YA  G +  A++VFD     D+ +WN L+ G AQ              + S    
Sbjct: 116 RLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSV 175

Query: 192 ----------------EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
                           EA+ +F+ M      +P+ VT++  ++A  +LGA   G   H Y
Sbjct: 176 SWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAY 235

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           +  + +++   + +A+I+MY+KCG ++ A  VFDN+  ++SL TWN M+  F  +G   R
Sbjct: 236 VFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSER 295

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVV 354
           ALELF +M    + P+ +++   L AC+H GLV++G++ F  M+   G++P++ HYG +V
Sbjct: 296 ALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMV 355

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DL  RAG  ++A +I++++ M  D  + + LLGAC+ + ++E+ +    +L+E  +N+  
Sbjct: 356 DLFCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAANDHA 415

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
            +VLLSN+YA    W  V +VRK M +R V K PG S +E+ GVIH+F + DKSH + R+
Sbjct: 416 GYVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRD 475

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEE-KENALCYHSEKLAVAFGLISTSEATSI 533
           IY+ L EI  ++K  GY   TS VL DI +E+ KE++L  HSEKLA+AFGLIST+  T I
Sbjct: 476 IYKMLGEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPI 535

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +V  NLRIC DCH+ IKLISK+Y R IIVRD  RFH F+ G+CSC DYW
Sbjct: 536 RVVNNLRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 119/244 (48%), Gaps = 8/244 (3%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVL 122
            F ++ +  +  +N VL     + +   A+  +R+ML     + D +T    + A A + 
Sbjct: 165 FFARMPSRDSVSWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLG 224

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM-GVRDIASWNALI 181
           AL   L  H++V R     +  L + L+++Y+K G I  A  VFD + G R + +WNA++
Sbjct: 225 ALAHGLWAHAYVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAML 284

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI-REER 240
           AG      +  A++LF RM+   +  PN++T    L AC H G  +EG K  + + R   
Sbjct: 285 AGFTANGYSERALELFTRMESTRLM-PNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYG 343

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           ++ ++     ++D++ + G+ +KA E+   +           ++ A   H    + LEL 
Sbjct: 344 IEPDIAHYGCMVDLFCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTH----KNLELG 399

Query: 301 EQMG 304
           +++G
Sbjct: 400 KKVG 403


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/550 (36%), Positives = 309/550 (56%), Gaps = 37/550 (6%)

Query: 68  INAPSTN--DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           + AP  N   + +++ G + + +P +AV  +  ML      D +    AL AC+++  L 
Sbjct: 195 VQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLD 254

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD------------------ 167
               +H  V +        L   L+D+YAK G+I  A+ VFD                  
Sbjct: 255 LGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGY 314

Query: 168 --------------EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
                         +MG RD+ ++N++I G        +A+ LF +M+  G+ + +  TV
Sbjct: 315 CKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGM-RADNFTV 373

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           +  L AC  LGA   G  +H  I +  ++ +V +  A++DMY KCG +D+A  VF  +  
Sbjct: 374 VSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMG- 432

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
            + + TW  M+   A +G G  ALE F QM R G +P  V+Y+A L AC+H+ L+D+G  
Sbjct: 433 ERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRL 492

Query: 334 LFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            FN M +   + P ++HYG ++DLL R+G L EA  +V+++ M  + V+W ++L AC+++
Sbjct: 493 HFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVH 552

Query: 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSY 452
            ++++A  A+  L+++       +V L N+Y    +W D  RVR  M+ R VKK  G+S 
Sbjct: 553 KNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSS 612

Query: 453 IEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALC 512
           I V G +HKF  +D+SH    EI   ++EI  ++K  GY+  TS +  D+ EEEKE AL 
Sbjct: 613 ITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDEEEKEQALL 672

Query: 513 YHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
            HSEK+A+AFGLIS   +  I + KNLR+C DCH  IKL+S+++NREIIVRDR RFH F+
Sbjct: 673 AHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHFR 732

Query: 573 DGACSCKDYW 582
           DGACSC D+W
Sbjct: 733 DGACSCNDFW 742



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 138/271 (50%), Gaps = 8/271 (2%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           I Q QA     G+ Q K  P  + II+ Y    L  +  A +LF Q+ A     FN+++ 
Sbjct: 288 IAQAQAVFDAVGRGQ-KPEPWNA-IIDGYC--KLGHVDVARSLFDQMGARDVITFNSMIT 343

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
           G  HS +  +A+  + QM R   R+D  T    L ACA + AL     +H+ + +     
Sbjct: 344 GYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEE 403

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D  LGT LLD+Y K G +  A  VF  MG RD+ +W A+IAGLA   +  +A++ F +MK
Sbjct: 404 DVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMK 463

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIH--EYIREERLDMNVVVCNAVIDMYAKCG 259
            +G F+P  VT +  L AC H     EG ++H  E     +L   V     +ID+ A+ G
Sbjct: 464 RDG-FQPTSVTYIAVLTACSHSSLLDEG-RLHFNEMRSLHKLHPQVEHYGCMIDLLARSG 521

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           LLD+A  +   +  + + V W +++ A  VH
Sbjct: 522 LLDEAMHLVQTMPMQPNAVIWGSILSACRVH 552



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 193/440 (43%), Gaps = 74/440 (16%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYA--LSPLNELAYAHALFRQINAPSTNDFNAVL 80
            QL A LTT+G+   +  P    ++      +S    L Y  +LF ++   +T  F+  L
Sbjct: 16  SQLHALLTTSGRIAHR--PSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHSTTFLFDTAL 73

Query: 81  RG-LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL--QIHSHVLRH 137
           R  L  S+   + VL  R+M  G  R+ A T  F  + CA        L   +H+  LR 
Sbjct: 74  RACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLHAACLRT 133

Query: 138 GFLADA-LLGTTLLDVYAKVGEIVSAKKVFDEMGVRD----------------------- 173
              + A L+   L+ +YA +G    A++ FDE+  +D                       
Sbjct: 134 MLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRL 193

Query: 174 --------IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
                   + SW +LIAG ++    ++AV  F  M  +GV  P+EV V+GAL+AC  L  
Sbjct: 194 LVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGV-APDEVAVIGALSACSKLKN 252

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK------------- 272
              G  +H  + ++R+ M   +  A+IDMYAKCG + +A  VFD +              
Sbjct: 253 LDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIID 312

Query: 273 --CR----------------KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
             C+                + ++T+N+M+  +   G    AL+LF QM R G++ D+ +
Sbjct: 313 GYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFT 372

Query: 315 YLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            ++ L AC   G +  G  L  S+    V+ ++    +++D+  + GR+ EA  +     
Sbjct: 373 VVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFH--R 430

Query: 375 MGT-DMVLWQTLLGACQLYG 393
           MG  D+  W  ++      G
Sbjct: 431 MGERDVHTWTAMIAGLAFNG 450


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/443 (41%), Positives = 271/443 (61%), Gaps = 3/443 (0%)

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
           ++A+L   LL++Y + G +  A+KVFD M   D  SW  +I    +     EA++LF RM
Sbjct: 9   SNAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRM 68

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
            +EG+  P  VT+   L AC   GA K G +IH  +       +V+   A++DMYAKCG 
Sbjct: 69  NLEGI-PPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGS 127

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L+ + +VF  ++ R S V+W  M+ A A HG G  ALELF++M   G+  D  +++  L 
Sbjct: 128 LECSSKVFTAMETRNS-VSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLR 186

Query: 321 ACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC+HAGL+ + +  F+SM  +  + P   HY   +D +GRAGRLQ+A +++ S+    + 
Sbjct: 187 ACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPET 246

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           V W+TLL AC+++   E A   +  L ++   +   + LL N+YAA ER+ D  RVRK+M
Sbjct: 247 VTWKTLLNACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSM 306

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
            +R +KKVPG S+IEV   +H+F   D++H    EI  +L+++  +++E GY   T  VL
Sbjct: 307 TDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVL 366

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           H + EEEKE  +  HSEKLA+AFGLI+T   T + + KNLR+C DCH   K+I+K+  R 
Sbjct: 367 HAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRR 426

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           I+VRD  RFH F+DG CSCKDYW
Sbjct: 427 IVVRDTHRFHHFEDGQCSCKDYW 449



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 147/317 (46%), Gaps = 11/317 (3%)

Query: 32  TGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTN 91
           +G+ +S    + + ++  Y       L  A  +F  ++ P    +  ++     + +   
Sbjct: 3   SGELKSSNAILENALLNMYVRC--GSLEEARKVFDAMDHPDAFSWTNMITACTENCELLE 60

Query: 92  AV-LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150
           A+ L++R  L G   + ++T +  L ACA   AL    QIHS +   GF +  L  T LL
Sbjct: 61  ALELFHRMNLEGIPPT-SVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALL 119

Query: 151 DVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE 210
           D+YAK G +  + KVF  M  R+  SW A+IA LAQ     EA++LFK M +EG+   + 
Sbjct: 120 DMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVA-DA 178

Query: 211 VTVLGALAACGHLGAWKEG-DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
            T +  L AC H G  KE  +  H  + +  +          +D   + G L  A E+  
Sbjct: 179 TTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIH 238

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL-- 327
           ++      VTW T++ A  +H    RA ++ E + +  + P+D S    L    +A    
Sbjct: 239 SMPFHPETVTWKTLLNACRIHSQAERATKVAELLAK--LAPED-SMAYTLLGNVYAATER 295

Query: 328 VDDGVRLFNSMANCGVK 344
             D +R+  SM + G+K
Sbjct: 296 YGDQMRVRKSMTDRGLK 312


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 212/598 (35%), Positives = 336/598 (56%), Gaps = 40/598 (6%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
            IKQ+  H+   G  QS    + +K+I       +    Y   +   +   +   + AV+
Sbjct: 65  QIKQIHGHVLRKGLDQSCY--ILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVI 122

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           RG     K   A+  Y  M +      + T S  LKAC  +  L    Q H+   R    
Sbjct: 123 RGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGF 182

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA------------------ 182
               +G T++D+Y K G IV A+KVFDEM  RD+ SW  LIA                  
Sbjct: 183 CFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESL 242

Query: 183 -------------GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
                        G AQ     EA++ F RM+  G+ + +EVTV G ++AC  LGA K  
Sbjct: 243 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI-RADEVTVAGYISACAQLGASKYA 301

Query: 230 DKIHEYIREERLDMN--VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
           D+  +  ++     +  VV+ +A+IDMY+KCG +++A  VF ++   K++ ++++M++  
Sbjct: 302 DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMN-NKNVFSYSSMILGL 360

Query: 288 AVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKP 345
           A HG    AL+LF  M  +  +KP+ V+++ AL AC+H+GLVD G ++F SM    GV+P
Sbjct: 361 ATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEP 420

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
              HY  +VDLLGRAGRLQEA +++K++S+     +W  LLGAC+++ + ++AEIA+  L
Sbjct: 421 TRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHL 480

Query: 406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSY-IEVGGVIHKFFT 464
            E+  +  G+++LLSN+Y++   W  V  VRK +K + +KK P  S+ ++  G +HKFF 
Sbjct: 481 FELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFP 540

Query: 465 SDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGL 524
            + +H   ++I +KL+E++ ++   GY    S V +D+ +  K   L  H+EKLA+AF L
Sbjct: 541 GNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSL 600

Query: 525 ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++T+   +I++ KNLR+C+DCH  ++L S+V  R II+RD +RFH F+ GACSC D+W
Sbjct: 601 LTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 192/519 (36%), Positives = 313/519 (60%), Gaps = 4/519 (0%)

Query: 58   LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
            L+YA  +F  I + + N +NA++ G A S+ P  ++  + QM       D+ T    L A
Sbjct: 801  LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 860

Query: 118  CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
            C+++ +L    ++H  ++R+    D  +  ++L +Y   GE+ + + +FD M  + + SW
Sbjct: 861  CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSW 920

Query: 178  NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            N +I G  Q      A+ +F++M + G+ +   ++++    AC  L + + G + H Y  
Sbjct: 921  NTVITGYLQNGFPDRALGVFRQMVLYGI-QLCGISMMPVFGACSLLPSLRLGREAHAYAL 979

Query: 238  EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
            +  L+ +  +  ++IDMYAK G + ++ +VF+ +K  KS  +WN M+M + +HG    A+
Sbjct: 980  KHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKSTASWNAMIMGYGIHGLAKEAI 1038

Query: 298  ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
            +LFE+M R G  PDD+++L  L ACNH+GL+ +G+R  + M ++ G+KPN+KHY  V+D+
Sbjct: 1039 KLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDM 1098

Query: 357  LGRAGRLQEACDIV-KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
            LGRAG+L +A  +V + +S   D+ +W++LL +C+++ ++EM E  + KL E+      +
Sbjct: 1099 LGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPEN 1158

Query: 416  FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
            +VLLSNLYA   +W+DV +VR+ M    ++K  G S+IE+   +  F   ++    + EI
Sbjct: 1159 YVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEI 1218

Query: 476  YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
                  +  KI + GY   T  V HD+ EEEK   L  HSEKLA+ +GLI TSE T+I+V
Sbjct: 1219 KSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRV 1278

Query: 536  FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
            +KNLRIC DCH+  KLISKV  REI+VRD  RFH FK+G
Sbjct: 1279 YKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNG 1317



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 143/293 (48%), Gaps = 13/293 (4%)

Query: 44  SKIIEFYAL--SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           ++II  YA+  SP +    +  +F  + + +   +NAV+   + +      +  + +M+ 
Sbjct: 479 TRIITMYAMCGSPDD----SRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMIS 534

Query: 102 GSHR-SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
            +    D  T    +KACA +  +   L +H  V++ G + D  +G  L+  Y   G + 
Sbjct: 535 TTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVT 594

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME---GVFKPNEVTVLGAL 217
            A ++FD M  R++ SWN++I   +    + E+  L   M  E   G F P+  T++  L
Sbjct: 595 DALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVL 654

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
             C        G  +H +  + RLD  +V+ NA++DMY+KCG +  A  +F  +   K++
Sbjct: 655 PVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF-KMNNNKNV 713

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQM--GRAGVKPDDVSYLAALCACNHAGLV 328
           V+WNTMV  F+  GD     ++  QM  G   VK D+V+ L A+  C H   +
Sbjct: 714 VSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 766



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 134/265 (50%), Gaps = 4/265 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFALKAC 118
           A  +F+  N  +   +N ++ G +            RQML G    ++D +T   A+  C
Sbjct: 701 AQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVC 760

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
                L    ++H + L+  F+ + L+    +  YAK G +  A++VF  +  + + SWN
Sbjct: 761 FHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWN 820

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ALI G AQ N    ++D   +MK+ G+  P+  TV   L+AC  L + + G ++H +I  
Sbjct: 821 ALIGGHAQSNDPRLSLDAHLQMKISGLL-PDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 879

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L+ ++ V  +V+ +Y  CG L     +FD ++  KSLV+WNT++  +  +G   RAL 
Sbjct: 880 NWLERDLFVYLSVLSLYIHCGELCTVQALFDAME-DKSLVSWNTVITGYLQNGFPDRALG 938

Query: 299 LFEQMGRAGVKPDDVSYLAALCACN 323
           +F QM   G++   +S +    AC+
Sbjct: 939 VFRQMVLYGIQLCGISMMPVFGACS 963



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 134/271 (49%), Gaps = 10/271 (3%)

Query: 57   ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
            EL    ALF  +   S   +N V+ G   +  P  A+  +RQM+    +   ++      
Sbjct: 901  ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 960

Query: 117  ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            AC+ + +L    + H++ L+H    DA +  +L+D+YAK G I  + KVF+ +  +  AS
Sbjct: 961  ACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS 1020

Query: 177  WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
            WNA+I G     LA EA+ LF+ M+  G   P+++T LG L AC H G   EG +  + +
Sbjct: 1021 WNAMIMGYGIHGLAKEAIKLFEEMQRTG-HNPDDLTFLGVLTACNHSGLIHEGLRYLDQM 1079

Query: 237  REE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVF-DNIKCRKSLVTWNTMVMAFAVHGD-- 292
            +    L  N+     VIDM  + G LDKA  V  + +     +  W +++ +  +H +  
Sbjct: 1080 KSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLE 1139

Query: 293  -GPR-ALELFEQMGRAGVKPDDVSYLAALCA 321
             G + A +LFE       KP++   L+ L A
Sbjct: 1140 MGEKVAAKLFELEPE---KPENYVLLSNLYA 1167



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 126/284 (44%), Gaps = 6/284 (2%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +L T ++ +YA  G    ++ VFD +  +++  WNA+I+  ++  L  E ++ F  M 
Sbjct: 474 DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMI 533

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
                 P+  T    + AC  +     G  +H  + +  L  +V V NA++  Y   G +
Sbjct: 534 STTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFV 593

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL----ELFEQMGRAGVKPDDVSYLA 317
             A ++FD I   ++LV+WN+M+  F+ +G    +     E+ E+ G     PD  + + 
Sbjct: 594 TDALQLFD-IMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVT 652

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            L  C     +  G  +        +   +    +++D+  + G +  A  I K ++   
Sbjct: 653 VLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFK-MNNNK 711

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           ++V W T++G     GD        R+++  G +   D V + N
Sbjct: 712 NVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILN 755



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 12/210 (5%)

Query: 217 LAACGHLGAWKEGDKIHEYIR-EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275
           L A G     + G KIH+ +    RL  + V+C  +I MYA CG  D +  VFD ++  K
Sbjct: 446 LQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRS-K 504

Query: 276 SLVTWNTMVMAFAVHGDGPRALELF-EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           +L  WN ++ +++ +      LE F E +    + PD  +Y   + AC  AG+ D G+ L
Sbjct: 505 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKAC--AGMSDVGIGL 562

Query: 335 --FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
                +   G+  ++    ++V   G  G + +A  +   +    ++V W +++   +++
Sbjct: 563 AVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLF-DIMPERNLVSWNSMI---RVF 618

Query: 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
            D   +E +   L EM   N GD   + ++
Sbjct: 619 SDNGFSEESFLLLGEMMEEN-GDGAFMPDV 647


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/550 (35%), Positives = 321/550 (58%), Gaps = 7/550 (1%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL++C+  G V    I  + AHL  +  F      +++ I+  YA      L  A  +F 
Sbjct: 93  LLKECTRLGKVEQGRI--VHAHLVDS-HFLDNHLVLQNIIVNMYA--KCGCLDDARRMFD 147

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           ++       + A++ G + +++P +A+L + QMLR   + +  T S  LKA      L  
Sbjct: 148 EMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDP 207

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             Q+H+  L++G+ +   +G+ L+D+YA+ G + +A+  FD M  +   SWNALI+G A+
Sbjct: 208 GTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHAR 267

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
                 A+ L  +M+ +  F+P   T     +AC  +GA ++G  +H ++ +  L +   
Sbjct: 268 KGEGEHALHLLWKMQRKN-FQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAF 326

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           + N ++DMYAK G +D A  VFD +  +  +V+WNTM+   A HG G   L+ FEQM R 
Sbjct: 327 IGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRI 385

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           G++P+++S+L  L AC+H+GL+D+G+  F  M    V+P++ HY + VDLLGR G L  A
Sbjct: 386 GIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRA 445

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426
              ++ + +     +W  LLGAC+++ ++E+   A+ +  E+  ++ G  +LLSN+YA+ 
Sbjct: 446 ERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASA 505

Query: 427 ERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKI 486
            RW DV +VRK MK   VKK P  S++E+   +H F  +D++H + +EI  K +EI  KI
Sbjct: 506 GRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKI 565

Query: 487 KEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCH 546
           KE GY   TS VL  + ++E+E  L YHSEKLA+AF L++T   + I++ KN+R+C DCH
Sbjct: 566 KEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCH 625

Query: 547 DVIKLISKVY 556
             IK +SK+Y
Sbjct: 626 AAIKFVSKIY 635



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 154/294 (52%), Gaps = 4/294 (1%)

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADAL-LGTTLLDVYAKVGEI 159
           RGS   D    S  LK C R+  + +   +H+H++   FL + L L   ++++YAK G +
Sbjct: 80  RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCL 139

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
             A+++FDEM  +D+ +W ALIAG +Q N   +A+ LF +M   G+ +PN  T+   L A
Sbjct: 140 DDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGL-QPNHFTLSSLLKA 198

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
            G       G ++H +  +     +V V +A++DMYA+CG +D A   FD +   KS V+
Sbjct: 199 SGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPT-KSEVS 257

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           WN ++   A  G+G  AL L  +M R   +P   +Y +   AC   G ++ G  +   M 
Sbjct: 258 WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMI 317

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
             G+K       +++D+  +AG + +A  +   + +  D+V W T+L  C  +G
Sbjct: 318 KSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQHG 370


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 203/581 (34%), Positives = 328/581 (56%), Gaps = 19/581 (3%)

Query: 7   LLQKCS-----SNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           +L KC+       G   H HI+        +  F+  L  + + I+  YA      L  A
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQ--------SSTFEDDLV-LLNFILNMYA--KCGSLEEA 159

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
             LF ++       +  ++ G + S + + A+  + +ML    + +  T S  LKA    
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
            +     Q+H+  L++G+  +  +G++LLD+YA+   +  AK +F+ +  +++ SWNALI
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           AG A+       + LF +M  +G F+P   T    LA C   G+ ++G  +H ++ +   
Sbjct: 280 AGHARKGEGEHVMRLFXQMLRQG-FEPTHFTYSSVLA-CASSGSLEQGKWVHAHVIKSGG 337

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
                + N +IDMYAK G +  A +VF  +  ++ +V+WN+++  +A HG G  AL+LFE
Sbjct: 338 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHGLGAEALQLFE 396

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           QM +A V+P+++++L+ L AC+H+GL+D+G   F  M    ++  + H+ +VVDLLGRAG
Sbjct: 397 QMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAG 456

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           RL EA   ++ + +     +W  LLGAC+++ ++++   A+ ++ E+  ++ G  VLLSN
Sbjct: 457 RLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 516

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YA+  R  D  +VRK MK   VKK P  S++E+   +H F  +D SH    EI    ++
Sbjct: 517 IYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEK 576

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           I  KIKE GY   TS VL  + ++++E  L YHSEKLA+AF ++ T    +I++ KN+RI
Sbjct: 577 ISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRI 636

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH   K  S+V  REIIVRD  RFH F  G CSC+DYW
Sbjct: 637 CGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 157/292 (53%), Gaps = 4/292 (1%)

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
           GS   +    S  L  C  +  L +   IH+H+    F  D +L   +L++YAK G +  
Sbjct: 99  GSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEE 158

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+ +FD+M  +D+ SW  LI+G +Q   ASEA+ LF +M   G F+PNE T+   L A G
Sbjct: 159 AQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSLLKASG 217

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
              +   G ++H +  +   DMNV V ++++DMYA+   + +A  +F+++   K++V+WN
Sbjct: 218 TGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAA-KNVVSWN 276

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            ++   A  G+G   + LF QM R G +P   +Y + L AC  +G ++ G  +   +   
Sbjct: 277 ALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKS 335

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           G +P      +++D+  ++G +++A  + + + +  D+V W +++     +G
Sbjct: 336 GGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHG 386


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 183/442 (41%), Positives = 275/442 (62%), Gaps = 3/442 (0%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +  TT++    ++G +  A+K+FD M  R++ SWNA+I+G  +     +A+++F +M+
Sbjct: 160 DVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMR 219

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
             G+ + N      A+ AC   G    G ++H ++ +  + M+  +  AV+DMY KCG +
Sbjct: 220 ALGI-EGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSV 278

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           ++A+ VF  +   K L +WN M+   AVHG    A+ELF +M R  V PDDV+ +  L A
Sbjct: 279 EEAWHVFKVLPT-KGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTA 337

Query: 322 CNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C H G+V DG   FN +    G++P M+HYG +VDL GRAG L EA  ++  + M  D+ 
Sbjct: 338 CAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIG 397

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +   L GAC+++ D+++ E    +++E+   N G +VLL+NL A+  +W DV +VR+ M 
Sbjct: 398 VLGALFGACKIHRDLDLGEAIGWRVIELDPQNSGRYVLLANLLASAGQWVDVAKVRRLMD 457

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
            R+V K  G S IE+ G + +F      H + +EI+  + ++M KI+  GY   TS VLH
Sbjct: 458 ERNVSKEAGRSVIEIDGEVCEFQCGSLCHAQEKEIFAAVKDMMRKIRLEGYMPDTSDVLH 517

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           DI EEEKE  L YHSEKLA+AFGL+ T    ++++ KNLR+CRDCH+  K IS+V+ REI
Sbjct: 518 DITEEEKEVPLQYHSEKLAIAFGLLRTRPGDTVRITKNLRVCRDCHEATKFISRVFEREI 577

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           +VRDR RFH FKDG CSC+DYW
Sbjct: 578 VVRDRNRFHHFKDGTCSCRDYW 599


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 204/562 (36%), Positives = 333/562 (59%), Gaps = 6/562 (1%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY-AHALFRQINAPSTNDFNAVL 80
           IK LQ H        S +  V + +I FY+ S   +L + +   F      S+  +++++
Sbjct: 32  IKGLQLHGYVVKSGLSLIPLVANNLINFYSKS---QLPFDSRRAFEDSPQKSSTTWSSII 88

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
              A +  P  ++ + ++M+ G+ R D      A K+CA +        +H   ++ G+ 
Sbjct: 89  SCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYD 148

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200
           AD  +G++L+D+YAK GEIV A+K+FDEM  R++ +W+ ++ G AQ     EA+ LFK  
Sbjct: 149 ADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEA 208

Query: 201 KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260
             E +   N+ +    ++ C +    + G +IH    +   D +  V ++++ +Y+KCG+
Sbjct: 209 LFENL-AVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGV 267

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
            + A++VF+ +   K+L  WN M+ A+A H    + +ELF++M  +G+KP+ +++L  L 
Sbjct: 268 PEGAYQVFNEVPV-KNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLN 326

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           AC+HAGLVD+G   F+ M    ++P  KHY S+VD+LGRAGRLQEA +++ ++ +     
Sbjct: 327 ACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTES 386

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
           +W  LL +C ++ + E+A  A+ K+ E+G  + G  + LSN YAA  R++D  + RK ++
Sbjct: 387 VWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLR 446

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
           +R  KK  G S++E    +H F   ++ H K +EIYEKL E+  ++++ GY A TS VL 
Sbjct: 447 DRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLR 506

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           ++  +EK   + YHSE+LA+AFGLI+      I+V KNLR+C DCH+ IK +S    R I
Sbjct: 507 EVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVI 566

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           IVRD  RFHRF+DG CSC DYW
Sbjct: 567 IVRDNNRFHRFEDGKCSCNDYW 588



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 138/274 (50%), Gaps = 3/274 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L + AR  +  + LQ+H +V++ G     L+   L++ Y+K      +++ F++   +  
Sbjct: 22  LLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSS 81

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            +W+++I+  AQ  L   +++  K+M M G  +P++  +  A  +C  L     G  +H 
Sbjct: 82  TTWSSIISCFAQNELPWMSLEFLKKM-MAGNLRPDDHVLPSATKSCAILSRCDIGRSVHC 140

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +   D +V V ++++DMYAKCG +  A ++FD +  ++++VTW+ M+  +A  G+  
Sbjct: 141 LSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMP-QRNVVTWSGMMYGYAQMGENE 199

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            AL LF++     +  +D S+ + +  C ++ L++ G ++           +     S+V
Sbjct: 200 EALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLV 259

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            L  + G  + A  +   V +  ++ +W  +L A
Sbjct: 260 SLYSKCGVPEGAYQVFNEVPV-KNLGIWNAMLKA 292


>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 201/567 (35%), Positives = 317/567 (55%), Gaps = 10/567 (1%)

Query: 23  KQLQAHLTTTGQFQ---SKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAV 79
           +QL  HL   G      S    +   ++ FYA   L EL+   A      +PS   ++++
Sbjct: 35  QQLHGHLLKGGHLPAVASSHALLAHHLLTFYARCSLPELSL-RAFLDLPASPSPAAWSSL 93

Query: 80  LRGLAHSSKPTNAVLWYRQML----RGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +   A +  P  A   +R+ML      + RS          A            +H    
Sbjct: 94  ISSFAQNGLPAAAFDAFRRMLAAGVPATDRSIPPAAKAVAAAADSSRPPLAPHALHGLAS 153

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           +  F  D  +G+ +LD+YAK G +  A++VFDEM  R++ SW+ALI G A   +   A+ 
Sbjct: 154 KTPFAGDVFVGSAVLDMYAKCGNLSDARRVFDEMPERNVVSWSALIGGYADAGMHPSALC 213

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           +F R  +E   + N+ TV   +  C     ++ G ++H    +  LD +  V ++++ +Y
Sbjct: 214 IF-RSALEEAVQVNDFTVSCIVRVCAAATLFELGAQVHARSIKTALDASPFVGSSLVSLY 272

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KCGL+D A+ VF      ++L  WN +++A A HG    A E F +M  AG +P+ +++
Sbjct: 273 SKCGLVDCAYRVFSAAP-ERNLGIWNAVLIASAQHGHTSTAFERFTKMQHAGFRPNFITF 331

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           L  L AC+HAGLVD+G R F+ M    ++P ++HY ++VDLLGR GR+ EA D+++S+ M
Sbjct: 332 LCLLTACSHAGLVDEGKRYFSLMKEYRIEPEVEHYAAMVDLLGRVGRITEALDLIESMPM 391

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
                +W  LL AC+++ D + A IA+++L E GS + G  +LLS+ YAA  R  D    
Sbjct: 392 EPPDSVWGALLMACRMFKDADTAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHVDAALA 451

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           RKAM++  ++K  G S++E  G +H F ++ + H +  EIY  L+++  K+   GY A T
Sbjct: 452 RKAMRDAGIRKETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMAVAGYVADT 511

Query: 496 SCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKV 555
           S V+ D+  +EK  +L YHSE+LA+A GL+   E   I+V KNLR+C DCH+ +K +SK 
Sbjct: 512 SAVVKDVDRDEKCASLGYHSERLAIALGLLIVPEGVPIRVMKNLRVCDDCHNAVKYLSKC 571

Query: 556 YNREIIVRDRVRFHRFKDGACSCKDYW 582
             R +++RD  RFHRF+DG CSC D+W
Sbjct: 572 TGRVVVLRDNRRFHRFEDGLCSCGDFW 598



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 130/301 (43%), Gaps = 22/301 (7%)

Query: 118 CARVLA-----------LFETLQIHSHVLRHGFL-----ADALLGTTLLDVYAKVG-EIV 160
           CAR LA           L +  Q+H H+L+ G L     + ALL   LL  YA+     +
Sbjct: 14  CARTLAELLVALSAARALPKGQQLHGHLLKGGHLPAVASSHALLAHHLLTFYARCSLPEL 73

Query: 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 220
           S +   D       A+W++LI+  AQ  L + A D F+RM   GV   +      A A  
Sbjct: 74  SLRAFLDLPASPSPAAWSSLISSFAQNGLPAAAFDAFRRMLAAGVPATDRSIPPAAKAVA 133

Query: 221 GHLGAWKE---GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
               + +       +H    +     +V V +AV+DMYAKCG L  A  VFD +   +++
Sbjct: 134 AAADSSRPPLAPHALHGLASKTPFAGDVFVGSAVLDMYAKCGNLSDARRVFDEMP-ERNV 192

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           V+W+ ++  +A  G  P AL +F       V+ +D +    +  C  A L + G ++   
Sbjct: 193 VSWSALIGGYADAGMHPSALCIFRSALEEAVQVNDFTVSCIVRVCAAATLFELGAQVHAR 252

Query: 338 MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
                +  +     S+V L  + G L +    V S +   ++ +W  +L A   +G    
Sbjct: 253 SIKTALDASPFVGSSLVSLYSKCG-LVDCAYRVFSAAPERNLGIWNAVLIASAQHGHTST 311

Query: 398 A 398
           A
Sbjct: 312 A 312


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 201/559 (35%), Positives = 317/559 (56%), Gaps = 33/559 (5%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           N +  A  LF +  A + +  NA+            A+  +  M+    R D ++   A+
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAI 344

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV------------------- 156
            +C+++  +      H +VLR+GF +   +   L+D+Y K                    
Sbjct: 345 SSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVV 404

Query: 157 ------------GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
                       GE+ +A + F+ M  ++I SWN +I+GL QG+L  EA+++F  M+ + 
Sbjct: 405 TWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQE 464

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
               + VT++   +ACGHLGA      I+ YI +  + ++V +   ++DM+++CG  + A
Sbjct: 465 GVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESA 524

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
             +F+++  R  +  W   + A A+ G+  RA+ELF+ M   G+KPD V+++ AL AC+H
Sbjct: 525 MSIFNSLTNR-DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSH 583

Query: 325 AGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
            GLV  G  +F SM    GV P   HYG +VDLLGRAG L+EA  +++ + M  + V+W 
Sbjct: 584 GGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWN 643

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443
           +LL AC++ G+VEMA  A+ K+  +     G +VLLSN+YA+  RW+D+ +VR +MK + 
Sbjct: 644 SLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKG 703

Query: 444 VKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIG 503
           ++K PG S I++ G  H+F + D+SH +   I   LDE+  +    G+    S VL D+ 
Sbjct: 704 LRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVD 763

Query: 504 EEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
           E+EK   L  HSEKLA+A+GLIS+++ T+I++ KNLR+C DCH   K  SKVYNREII+R
Sbjct: 764 EKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILR 823

Query: 564 DRVRFHRFKDGACSCKDYW 582
           D  RFH  + G CSC D+W
Sbjct: 824 DNNRFHYIRQGKCSCGDFW 842



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 185/359 (51%), Gaps = 25/359 (6%)

Query: 52  LSPLNELAYAHALFRQINAPSTN-DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           L     L++A  +F    +  T   +N+++RG A S     A+L + +M+      D  T
Sbjct: 77  LGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYT 136

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
             F L ACA+  A    +QIH  +++ G+  D  +  +L+  YA+ GE+ SA+KVFDEM 
Sbjct: 137 FPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMS 196

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            R++ SW ++I G A+ + A +AVDLF RM  +    PN VT++  ++AC  L   + G+
Sbjct: 197 ERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGE 256

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           K++ +IR   +++N ++ +A++DMY KC  +D A  +FD      +L   N M   +   
Sbjct: 257 KVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGA-SNLDLCNAMASNYVRQ 315

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACN-----------HAGLVDDGVRLFNSMA 339
           G    AL +F  M  +GV+PD +S L+A+ +C+           H  ++ +G   ++++ 
Sbjct: 316 GLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNIC 375

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           N           +++D+  +  R   A  I   +S  T +V W +++      G+V+ A
Sbjct: 376 N-----------ALIDMYMKCHRQDTAFRIFDRMSNKT-VVTWNSIVAGYVENGEVDAA 422


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 204/579 (35%), Positives = 320/579 (55%), Gaps = 38/579 (6%)

Query: 40  FPVRSKIIEFYALSPLNELAY---AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWY 96
            PV+  +     +S L +L     A  L R   A +   +  ++ G + + +   AV  +
Sbjct: 166 IPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCF 225

Query: 97  RQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV 156
             ML      D +T    L ACA++  L     +H  V   G L    L   L+D+YAK 
Sbjct: 226 NSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKC 285

Query: 157 GEIVSAKKVFDEMGV--------------------------------RDIASWNALIAGL 184
           G+I  A +VFD +G                                 RD+ ++N+LI G 
Sbjct: 286 GDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGY 345

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
             G    EA+ LF +M+   + + +  T++  L AC  LGA  +G  +H  I +  ++++
Sbjct: 346 IHGGRLREALLLFMQMRRHDL-RADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVD 404

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + +  A++DMY KCG +++A  VF  +  R  + TW+ M+   A +G G  ALE F  M 
Sbjct: 405 IYLGTALLDMYLKCGRVEEASLVFQAMSVR-DVHTWSAMIAGLAFNGMGKAALEYFFWMK 463

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRL 363
             G +P+ V+Y+A L AC+H+ L+D+G   F  M     ++P ++HYG ++DLLGR+G L
Sbjct: 464 VDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLL 523

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            EA D+V+++ M  + V+W ++L AC+++ D  +A  A+  L+++  +    +V L N+Y
Sbjct: 524 DEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIY 583

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
               +W+D  ++R+ M+ R VKK  G+S I V G +HKF   D++H +  EI   ++EI 
Sbjct: 584 IDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEIT 643

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            ++K  GY+  TS +  D+ EEEKE+AL  HSEK+A+AFGLIS +    + + KNLR+C 
Sbjct: 644 RRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCE 703

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH  IKLIS+++NREIIVRDR RFH F+DG CSC D+W
Sbjct: 704 DCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 194/411 (47%), Gaps = 71/411 (17%)

Query: 49  FYALSPLNELAYAHALFRQINAPSTNDFNAVLRG-LAHSSKPTNAVLWYRQMLRGSHRSD 107
           F    PL+ L YA  LF ++   ST  F+  LR     SS P + ++ YR+M R    +D
Sbjct: 45  FTPTDPLH-LRYALCLFDRMPC-STFLFDTALRACFRASSGPESPLILYRRMRRTGVCTD 102

Query: 108 ALTCSFALKACARVLALFETLQ-IHSHVLRHGFL-ADALLGTTLLDVYAKVGEIVSAKKV 165
           A T  F  K CAR  A     Q +H+   R     A  L+   ++ +Y ++G    A++ 
Sbjct: 103 AFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRA 162

Query: 166 FDEMGVRDIASWNALIAGLAQGNL-------------------------------ASEAV 194
           FD++ V+D  +W  +I+GLA+  L                               A+EAV
Sbjct: 163 FDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAV 222

Query: 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
           D F  M  +G+ +P+EVTV+G L+AC  L     G  +H+ + E+ + M+  +  A+IDM
Sbjct: 223 DCFNSMLSDGI-EPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDM 281

Query: 255 YAKCGLLDKAFEVFDNIK---------------CR----------------KSLVTWNTM 283
           YAKCG + +A+EVFD +                C+                + LVT+N++
Sbjct: 282 YAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSL 341

Query: 284 VMAFAVHGDGPR-ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           +  + +HG   R AL LF QM R  ++ D+ + ++ L AC   G +  G  L   +    
Sbjct: 342 ITGY-IHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRL 400

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           V+ ++    +++D+  + GR++EA  + +++S+  D+  W  ++      G
Sbjct: 401 VEVDIYLGTALLDMYLKCGRVEEASLVFQAMSV-RDVHTWSAMIAGLAFNG 450


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 183/445 (41%), Positives = 280/445 (62%), Gaps = 6/445 (1%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           DA    T++  Y K G++ +A++VF  M  R + SW+A+I    +    SEA+ +F +M 
Sbjct: 183 DAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMM 242

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE---RLDMNVVVCNAVIDMYAKC 258
             G F+P+ V +   L AC HLGA + G  +H +++ E   R   NV++  A++DMY KC
Sbjct: 243 GNG-FRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKC 301

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G +D+A+ VFD ++  + +V WN M+   A++G G RALELF +M   G  P++ +++  
Sbjct: 302 GCMDEAWWVFDGVQ-SQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVV 360

Query: 319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
           LCAC H G VD+G  +F SM + G++P  +HYG + DLLGRAG L+EA  ++  + M   
Sbjct: 361 LCACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPH 420

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
              W  L+ +C ++ +V + E   +KL+E+  ++ G +V+L NLYA    W+D   +RK 
Sbjct: 421 ASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKM 480

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           M+ R  KK  G S+IE  G++H+F + D  H + R+IY  L+++  +++  GY   TS V
Sbjct: 481 MEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRQIYALLEDMEQRLQLIGYVKDTSQV 540

Query: 499 LHDI-GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           L D+  EE+K N L YHSE+LA+AFG+++T     I++ KNLR+CRDCH   KL+SK+Y 
Sbjct: 541 LMDMDDEEDKGNTLSYHSERLALAFGILNTPRHMPIRIVKNLRVCRDCHVYAKLVSKLYQ 600

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           REII+RDR RFH F+ G CSC D+W
Sbjct: 601 REIIMRDRHRFHLFRGGVCSCNDFW 625



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 138/297 (46%), Gaps = 15/297 (5%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
            +L  A  +F ++       ++A++     + + + A+  + QM+    R DA+  S  L
Sbjct: 198 GDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVL 257

Query: 116 KACARVLALFETLQIHSHVLRHGF---LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           KACA + AL     +H  +   G      + +L T L+D+Y K G +  A  VFD +  +
Sbjct: 258 KACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQ 317

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D+  WNA+I GLA       A++LF+RM   G F PNE T +  L AC H G   EG +I
Sbjct: 318 DVVLWNAMIGGLAMNGHGKRALELFRRMLDMG-FVPNESTFVVVLCACTHTGRVDEGKEI 376

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
              + +  ++        + D+  + GLL++A  V  ++        W  ++ +  +H +
Sbjct: 377 FRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNN 436

Query: 293 GPRALELFEQMGRAGV--KPDD---VSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
               + + E++G+  +  +PDD      L  L A N  GL +D   L   M   G K
Sbjct: 437 ----VGVGERVGKKLIELEPDDGGRYVVLFNLYAVN--GLWEDAKALRKMMEERGAK 487


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 201/554 (36%), Positives = 311/554 (56%), Gaps = 35/554 (6%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF ++   +T  +  ++ G A + +   A+   + + R        + + +  AC+ 
Sbjct: 371 AKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSH 430

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL    Q+HS  ++ G   ++ +   L+ +Y K   +   ++VF+ M V+D  SWN+ 
Sbjct: 431 IGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSF 490

Query: 181 IAGLAQGNL-------------------------------ASEAVDLFKRMKMEGVFKPN 209
           IA L Q N+                                 EAV+ FK M  E   KPN
Sbjct: 491 IAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE-KPN 549

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
              +   L+ CG LG+ K G +IH    +  +D  ++V NA++ MY KCG  D + +VFD
Sbjct: 550 SPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFD 608

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
           +++ R  + TWNT +   A HG G  A++++E M   GV P++V+++  L AC+HAGLVD
Sbjct: 609 SMEER-DIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVD 667

Query: 330 DGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +G + F SM+ + G+ P ++HY  +VDLLGR G +Q A   +  + +  D V+W  LLGA
Sbjct: 668 EGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGA 727

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448
           C+++ + E+   A+ KL     +N G++V+LSN+Y++   W +V  +RK MK R V K P
Sbjct: 728 CKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEP 787

Query: 449 GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKE 508
           G S++++   +H F T DK H K  EI   L ++   ++  GY   T  VLHDI EE+KE
Sbjct: 788 GCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKE 847

Query: 509 NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
           ++L YHSEKLAVA+GL+ T +   IQ+ KNLRIC DCH  IK +S V  R+I +RD  RF
Sbjct: 848 SSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRF 907

Query: 569 HRFKDGACSCKDYW 582
           H F++G+CSC D+W
Sbjct: 908 HHFRNGSCSCGDFW 921



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 176/386 (45%), Gaps = 19/386 (4%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           ++  A  LF+Q+   +   +  ++ G     +       +R M       D    +  L 
Sbjct: 172 QMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLS 231

Query: 117 ACARV--LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS-AKKVFDEMGVRD 173
           A   +  L + E L+    VL+ GF +D ++GT++L+VY +    +  A K FD M  R+
Sbjct: 232 AVTGLQDLGVLEVLR--PLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERN 289

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
             +W+ +IA L+ G     A+ ++ R  ++ +  P++  +L  LA CG +    E   + 
Sbjct: 290 EYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI--PSQTALLTGLARCGRI---TEARILF 344

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
           E I     D  VV  NA+I  Y + G++D+A E+FD +  R + ++W  M+  +A +G  
Sbjct: 345 EQIP----DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNT-ISWAGMIAGYAQNGRS 399

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             AL+L + + R G+ P   S  ++  AC+H G ++ G ++ +     G + N     ++
Sbjct: 400 EEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNAL 459

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           + + G+   ++    +   + +  D V W + + A        M E A      M S + 
Sbjct: 460 ISMYGKCRNMEYVRQVFNRMRV-KDTVSWNSFIAALV---QNNMLEDARHIFDNMLSRDV 515

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAM 439
             +  + + YA  ER D+     K M
Sbjct: 516 VSWTTIISAYAQAERGDEAVEFFKTM 541



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 165/424 (38%), Gaps = 94/424 (22%)

Query: 24  QLQAHLTTTGQFQSKLFPVRS---------KIIEFYALSPLNELAYAHALFRQINAPSTN 74
           QL+ HL+          PVRS                L+ L  L  A  +F  +      
Sbjct: 6   QLRRHLSAAAAATWAPLPVRSVHRALDKSAHSARIRELARLGRLREAREVFDAMPHRDII 65

Query: 75  DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHV 134
            +N+++    +S    +A + +  +  G+ R    T +  L   AR+  + +  ++   +
Sbjct: 66  AWNSMISAYCNSGMLEDARILFDAISGGNVR----TATILLSGYARLGRVLDARRVFDGM 121

Query: 135 LRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG----------- 183
                +A       ++  Y + G+I  A+++FD M  RD+ SWN+++ G           
Sbjct: 122 PERNTVA----WNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAW 177

Query: 184 -----LAQGNLASEAV---------------DLFKRMKMEGVF--KPNEVTVLGALAACG 221
                + Q NL +  V               D+F+ M  EG    + N  +VL A+    
Sbjct: 178 NLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQ 237

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK-CGLLDKAFEVFDNIKCRKSLVTW 280
            LG     + +   + +   + +VV+  +++++Y +    LD A + FD +  R    TW
Sbjct: 238 DLGVL---EVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEY-TW 293

Query: 281 NTMVMAF----------AVHGDGP---------------------RALELFEQMGRAGVK 309
           +TM+ A           AV+G  P                      A  LFEQ+      
Sbjct: 294 STMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIP----D 349

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           P  VS+ A +      G+VD+   LF+ M       N   +  ++    + GR +EA D+
Sbjct: 350 PIVVSWNAMITGYMQNGMVDEAKELFDRMP----FRNTISWAGMIAGYAQNGRSEEALDL 405

Query: 370 VKSV 373
           ++++
Sbjct: 406 LQAL 409



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 104/236 (44%), Gaps = 17/236 (7%)

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           A++G +  A++VFD M  RDI +WN++I+      +  +A  LF     + +   N  T 
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILF-----DAISGGNVRTA 98

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
              L+    LG   +  ++ + + E     N V  NA++  Y + G +  A  +FD +  
Sbjct: 99  TILLSGYARLGRVLDARRVFDGMPER----NTVAWNAMVSCYVQNGDITMARRLFDAMPS 154

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
           R  + +WN+MV  +        A  LF+QM +  +    V++   +           G  
Sbjct: 155 R-DVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNL----VTWTVMISGYVRIEQHGKGWD 209

Query: 334 LFNSMANCGVKPNMKHYGSV---VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           +F  M + G  P+  ++ SV   V  L   G L+    +V      +D+V+  ++L
Sbjct: 210 IFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSIL 265


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 203/538 (37%), Positives = 318/538 (59%), Gaps = 15/538 (2%)

Query: 55  LNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTC 111
           LNE   A  +FR++      D   +NA++       +   AV  +R+M+R   + D  T 
Sbjct: 190 LNE---ARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTM 246

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK-VGEIVSAKKVFDEMG 170
           +  L A   V  L   +Q H  +++ GF  ++ +G+ L+D+Y+K  G +V  +KVF+E+ 
Sbjct: 247 ASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIA 306

Query: 171 VRDIASWNALIAGLAQ-GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
             D+  WN +I+G +Q  +L+ + +  F+ M+  G F P++ + +   +AC +L +   G
Sbjct: 307 APDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNG-FHPDDCSFVCVTSACSNLSSPSVG 365

Query: 230 DKIHEYIREERLDMN-VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
            ++H    +  +  N V V NA++ MY+KCG +  A  VFD +    ++V+ N+M+  +A
Sbjct: 366 KQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNMVSLNSMIAGYA 424

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNM 347
            HG    +L LFE M +  + P+ ++++A L AC H G V++G + FN M     ++P  
Sbjct: 425 QHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEA 484

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
           +HY  ++DLLGRAG+L+EA  I++++      + W TLLGAC+ +G+VE+A  A+ + ++
Sbjct: 485 EHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQ 544

Query: 408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDK 467
           +   N   +V+LSN+YA+  RW++   V++ M+ R VKK PG S+IE+   +H F   D 
Sbjct: 545 LEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDT 604

Query: 468 SHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL---HDIGEEEKENALCYHSEKLAVAFGL 524
           SH   +EI+  + EI+ K+K+ GY       L    ++  +EKE  L YHSEKLAVAFGL
Sbjct: 605 SHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGL 664

Query: 525 ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IST E   I V KNLRIC DCH+ IKLIS +  REI VRD  RFH FK+G CSC DYW
Sbjct: 665 ISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 128/254 (50%), Gaps = 11/254 (4%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            TL++ YAK   I  A++VFDE+   DI S+N LIA  A       A+ LF  ++ E  F
Sbjct: 79  NTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVR-ELRF 137

Query: 207 KPNEVTVLGALAACG-HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265
             +  T+ G + ACG  +G  ++   +H ++     D    V NAV+  Y++ G L++A 
Sbjct: 138 GLDGFTLSGVIIACGDDVGLVRQ---LHCFVVVCGYDCYASVNNAVLACYSRKGFLNEAR 194

Query: 266 EVFDNI--KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
            VF  +     +  V+WN M++A   H +G  A+ELF +M R G+K D  +  + L A  
Sbjct: 195 RVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFT 254

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGS-VVDLLGR-AGRLQEACDIVKSVSMGTDMVL 381
               +  G++    M   G   N  H GS ++DL  + AG + E   + + ++   D+VL
Sbjct: 255 CVKDLVGGMQFHGMMIKSGFHGN-SHVGSGLIDLYSKCAGGMVECRKVFEEIA-APDLVL 312

Query: 382 WQTLLGACQLYGDV 395
           W T++     Y D+
Sbjct: 313 WNTMISGFSQYEDL 326


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 190/551 (34%), Positives = 316/551 (57%), Gaps = 5/551 (0%)

Query: 33  GQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNA 92
           G F+  +F V + +++ Y  S    +  A  LF  ++  +   +NA++ G +       A
Sbjct: 151 GGFEGNVF-VETALVDMY--SKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEA 207

Query: 93  VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV 152
           +  +  M R     D  T    + A   V  L     IH  ++R G+  D  + T L+D+
Sbjct: 208 IDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDI 267

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           Y     +  A +VF EM V+D+A+W  ++ G + G     A+  F +M      K + + 
Sbjct: 268 YVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIV 327

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
           ++G L++C H GA ++G ++H    +     N+ V +AVIDMYA CG L+ A   F  + 
Sbjct: 328 LMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMG 387

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K +V WN M+    ++G G  A++LF QM  +G+ PD+ ++++ L AC+HAG+V +G+
Sbjct: 388 -EKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGL 446

Query: 333 RLFNSMANCGVK-PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           ++F  M       PN++HY  V+D+LGRAG+L  A   + ++    D  ++ TLLGAC++
Sbjct: 447 QIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRI 506

Query: 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
           +G++++    S+K+ EM  N+ G +VLLSN+YA    W+ V   R +++++ +KK PGFS
Sbjct: 507 HGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFS 566

Query: 452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
            IE+   I+ F   +K H ++ +I   L  ++ KIK+ GY   T+ +L D+ ++ K++ L
Sbjct: 567 SIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDIL 626

Query: 512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
            +HSEK+A+AFGL+ T   T I++ KNLR C DCH   K +SKV+ R ++++D  RFH F
Sbjct: 627 YHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVF 686

Query: 572 KDGACSCKDYW 582
           +DG CSC+DYW
Sbjct: 687 QDGVCSCRDYW 697



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 179/374 (47%), Gaps = 10/374 (2%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLR 81
           ++Q+ A + T+G   +    + + ++  Y    L  LA A  +F      +   +  ++ 
Sbjct: 40  LQQIHAQIITSGLTHNTF--LSNSLMNAYVYCGL--LADAKQIFHHTPCKNVVSWTILIS 95

Query: 82  GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA 141
           GLA +     A+  +R+M  G+ + +A+T S  L A A +  +     +H   +R GF  
Sbjct: 96  GLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEG 155

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           +  + T L+D+Y+K G +  A+++F+ M  R++ SWNA+++G +    + EA+DLF  M+
Sbjct: 156 NVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMR 215

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            +G+   +  T++  + A   +G  + G  IH +I     + +  +  A++D+Y     +
Sbjct: 216 RKGLLV-DFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCV 274

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALC 320
           D A  VF  +   K +  W  M+  F+      RA++ F +M G   +K D +  +  L 
Sbjct: 275 DDAHRVFSEMFV-KDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILS 333

Query: 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG-TDM 379
           +C+H+G +  G R+           N+    +V+D+    G L++A        MG  D+
Sbjct: 334 SCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFF--YGMGEKDV 391

Query: 380 VLWQTLLGACQLYG 393
           V W  ++    + G
Sbjct: 392 VCWNAMIAGNGMNG 405


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 203/580 (35%), Positives = 333/580 (57%), Gaps = 19/580 (3%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY---AHAL 64
           +  C+S    S IH + +++   + G    +L  +  K            L Y   A  L
Sbjct: 72  ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFK------------LGYDEDAQRL 119

Query: 65  FRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLA 123
           F ++       +N+++ GL+        +  + +M   S R  + +T    + ACA + A
Sbjct: 120 FDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGA 179

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L E   +H  V++ G    A +  +L+++Y K+G + +A ++F+EM VR + SWN+++  
Sbjct: 180 LDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVI 239

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
                 A + +DLF  MK  G+  P++ T++  L AC   G  ++ + IH YI     + 
Sbjct: 240 HNHNGYAEKGMDLFNLMKRAGI-NPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNA 298

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           ++++  A++++YAK G L+ + ++F+ IK R   + W  M+  +AVH  G  A++LF+ M
Sbjct: 299 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDR-IAWTAMLAGYAVHACGREAIKLFDLM 357

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGR 362
            + GV+ D V++   L AC+H+GLV++G + F  M+    V+P + HY  +VDLLGR+GR
Sbjct: 358 VKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGR 417

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L++A +++KS+ M     +W  LLGAC++YG+VE+ +  + +L+ +  ++  ++++LSN+
Sbjct: 418 LEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNI 477

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           Y+A   W D  +VR  MK R + + PG S+IE G  IH+F   D+ H +  EI+ KL+E+
Sbjct: 478 YSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEEL 537

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
           + KI+E G A  T  VLHDI EE K + +  HSEKLA+AFGL+ T     + + KNLRIC
Sbjct: 538 IRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRIC 597

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH   K  S +  R II+RD  RFH F DG CSC+DYW
Sbjct: 598 GDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 149/276 (53%), Gaps = 5/276 (1%)

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           FA+ +C  V        IH+ V++    +D  +G  L+ +Y K+G    A+++FDEM  +
Sbjct: 70  FAISSCTSVSY---CSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNK 126

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D+ SWN+L++GL+        ++ F RM+ E   +PNEVT+L  ++AC  +GA  EG  +
Sbjct: 127 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSL 186

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H  + +  +     V N++I+MY K G LD A ++F+ +  R SLV+WN+MV+    +G 
Sbjct: 187 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMVVIHNHNGY 245

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
             + ++LF  M RAG+ PD  + +A L AC   GL      +   +  CG   ++    +
Sbjct: 246 AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATA 305

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +++L  + GRL  + DI + +    D + W  +L  
Sbjct: 306 LLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAG 340


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 229/625 (36%), Positives = 342/625 (54%), Gaps = 56/625 (8%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
             +LL++C+   AV     +QL A  T +G   S    + + ++  YA  PL   ++A  
Sbjct: 15  FRSLLRQCARASAVRPG--EQLHAAATVSGLLFSPSSFLLNALLHLYASCPLP--SHARK 70

Query: 64  LFRQI--NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
           LF +I  +   + D+ A++R     S P +A+ +Y QM + +   D +    AL AC+++
Sbjct: 71  LFDRIPHSHKDSVDYTALIR----CSHPLDALRFYLQMRQRALPLDGVALICALGACSKL 126

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAK---VGE-------------------- 158
                  Q+H  V++ GFL    +   ++D Y K   VGE                    
Sbjct: 127 GDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVL 186

Query: 159 --------IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK--P 208
                   + S K VFDEM  R+  +W  LI G        EA  L K M     F    
Sbjct: 187 EGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGL 246

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           N +T+   L+AC   G    G  +H Y ++    D+ V+V  +++DMYAKCG +  A  V
Sbjct: 247 NSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMV 306

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           F ++  R+++V WN M+   A+HG G   +E+F  M    VKPD V+++A L +C+H+GL
Sbjct: 307 FRHMP-RRNVVAWNAMLCGLAMHGMGKVVVEMFACMVEE-VKPDAVTFMALLSSCSHSGL 364

Query: 328 VDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           V+ G + F+ +    G++P ++HY  +VDLLGRAGRL+EA D+VK + +  + V+  +LL
Sbjct: 365 VEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPIPPNEVVLGSLL 424

Query: 387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK 446
           GAC  +G + + E   R+LV+M   N    +LLSN+YA   + D    +RK +KNR ++K
Sbjct: 425 GACYAHGKLRLGEKIMRELVQMDPLNTEYHILLSNMYALCGKADKANSLRKVLKNRGIRK 484

Query: 447 VPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL------- 499
           VPG S I V G +H+F   DKSH +  +IY KLD+++ K++  GY   T+C +       
Sbjct: 485 VPGMSSIYVDGQLHRFIAGDKSHPRTADIYMKLDDMICKLRLAGYVPNTNCQVLFGCSNG 544

Query: 500 HDIGE--EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
            D  E  EE E  L  HSEKLA+ FGL+ST  ++ + +FKNLRIC+DCH  IK+ S +Y 
Sbjct: 545 DDCMEAFEEVEQVLFTHSEKLALCFGLMSTPSSSPLCIFKNLRICQDCHSAIKIASDIYK 604

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           REI+VRDR RFH FK G+CSC DYW
Sbjct: 605 REIVVRDRYRFHSFKQGSCSCSDYW 629


>gi|302781198|ref|XP_002972373.1| hypothetical protein SELMODRAFT_97177 [Selaginella moellendorffii]
 gi|300159840|gb|EFJ26459.1| hypothetical protein SELMODRAFT_97177 [Selaginella moellendorffii]
          Length = 485

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 200/476 (42%), Positives = 291/476 (61%), Gaps = 5/476 (1%)

Query: 110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
           T S A+ AC+ ++ L    +IH+ +   GF AD  +  TL+D Y K   +   KKVF  M
Sbjct: 12  TLSIAIAACSALVDLSRGRKIHASLEGCGFQADDHVKNTLMDFYTKCDSLDDVKKVFRSM 71

Query: 170 GV-RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
           G    + SW  LI G  Q     EA   FK M+++G+   + VT    L AC +L +  +
Sbjct: 72  GGDAKVVSWTCLIVGCVQLGSYREAFHFFKLMELQGIH-ADTVTYASLLDACSNLASLSQ 130

Query: 229 GDKIHEYIRE-ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
           G K+H  I E   L+ +VV+  +++ MY+KCG L +A  +FD I   K++V W+ +++A+
Sbjct: 131 GRKLHARIAELGLLEADVVLQTSILTMYSKCGRLGEARGIFDRIG-EKNIVAWSAIIIAY 189

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPN 346
           A +GD   AL+LF +M +AG K  + ++++ L AC+HAGLVDD    F +M +   ++P 
Sbjct: 190 AQNGDCSTALKLFWKMEQAGQKASETTFVSVLYACSHAGLVDDAYYYFTTMKSERKLEPL 249

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLV 406
             HYG +VDLLGRAGRL +A ++++ +      VLW TLLGAC+ +GD+++AE A+ ++ 
Sbjct: 250 PGHYGCIVDLLGRAGRLADAEELIQRMKAPQSGVLWTTLLGACKTHGDMKLAERAAERIR 309

Query: 407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSD 466
           E+   +   +VLLSN+Y+   RWD    VRK M +  VKK  G S++EV G +H+F   D
Sbjct: 310 ELDPGSATPYVLLSNVYSEAGRWDLAASVRKRMDDMKVKKPAGKSWVEVRGKLHEFVAGD 369

Query: 467 KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIS 526
           +SH K  EI  +L  ++  IKE GYAA  S  LH+  EEEKE  L YHSEKLA+  GL+ 
Sbjct: 370 QSHPKIGEIVLELKRLLALIKEAGYAADKSATLHNAEEEEKEGLLYYHSEKLAMVMGLLH 429

Query: 527 TSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +     +QV KNLR+C DCH   K ISKV +R+I++RD  +FH F+ G CSC DYW
Sbjct: 430 SPRGEPVQVVKNLRVCSDCHTAAKFISKVEDRQIVLRDTKQFHHFEHGRCSCGDYW 485



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 136/276 (49%), Gaps = 11/276 (3%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPS-TNDFNAVLRGLAHSSKPTNAVLWYRQM- 99
           V++ +++FY  +  + L     +FR +   +    +  ++ G         A  +++ M 
Sbjct: 47  VKNTLMDFY--TKCDSLDDVKKVFRSMGGDAKVVSWTCLIVGCVQLGSYREAFHFFKLME 104

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL-ADALLGTTLLDVYAKVGE 158
           L+G H +D +T +  L AC+ + +L +  ++H+ +   G L AD +L T++L +Y+K G 
Sbjct: 105 LQGIH-ADTVTYASLLDACSNLASLSQGRKLHARIAELGLLEADVVLQTSILTMYSKCGR 163

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           +  A+ +FD +G ++I +W+A+I   AQ    S A+ LF +M+  G  K +E T +  L 
Sbjct: 164 LGEARGIFDRIGEKNIVAWSAIIIAYAQNGDCSTALKLFWKMEQAGQ-KASETTFVSVLY 222

Query: 219 ACGHLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
           AC H G   +       ++ ER L+        ++D+  + G L  A E+   +K  +S 
Sbjct: 223 ACSHAGLVDDAYYYFTTMKSERKLEPLPGHYGCIVDLLGRAGRLADAEELIQRMKAPQSG 282

Query: 278 VTWNTMVMAFAVHGD---GPRALELFEQMGRAGVKP 310
           V W T++ A   HGD     RA E   ++      P
Sbjct: 283 VLWTTLLGACKTHGDMKLAERAAERIRELDPGSATP 318



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 112/254 (44%), Gaps = 7/254 (2%)

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M  EG   PN  T+  A+AAC  L     G KIH  +       +  V N ++D Y KC 
Sbjct: 1   MNQEGT-APNNHTLSIAIAACSALVDLSRGRKIHASLEGCGFQADDHVKNTLMDFYTKCD 59

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            LD   +VF ++     +V+W  +++     G    A   F+ M   G+  D V+Y + L
Sbjct: 60  SLDDVKKVFRSMGGDAKVVSWTCLIVGCVQLGSYREAFHFFKLMELQGIHADTVTYASLL 119

Query: 320 CACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
            AC++   +  G +L   +A  G ++ ++    S++ +  + GRL EA  I   +    +
Sbjct: 120 DACSNLASLSQGRKLHARIAELGLLEADVVLQTSILTMYSKCGRLGEARGIFDRIGE-KN 178

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW--DDVGRVR 436
           +V W  ++ A    GD   A     K+ + G     +   +S LYA       DD     
Sbjct: 179 IVAWSAIIIAYAQNGDCSTALKLFWKMEQAG-QKASETTFVSVLYACSHAGLVDDAYYYF 237

Query: 437 KAMKN-RDVKKVPG 449
             MK+ R ++ +PG
Sbjct: 238 TTMKSERKLEPLPG 251


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 193/524 (36%), Positives = 314/524 (59%), Gaps = 4/524 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACA 119
           A  LF ++       +N+++ GL+        +  + +M   S R  + +T    + ACA
Sbjct: 173 AQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACA 232

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            + AL E   +H  V++ G    A +  +L+++Y K+G + +A ++F+EM VR + SWN+
Sbjct: 233 DMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNS 292

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           ++        A + +DLF  MK  G+  P++ T++  L AC   G  ++ + IH YI   
Sbjct: 293 MVVIHNHNGYAEKGMDLFNLMKRAGI-NPDQATMVALLRACTDTGLGRQAESIHAYIHRC 351

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
             + ++++  A++++YAK G L+ + ++F+ IK R   + W  M+  +AVH  G  A++L
Sbjct: 352 GFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR-IAWTAMLAGYAVHACGREAIKL 410

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLG 358
           F+ M + GV+ D V++   L AC+H+GLV++G + F  M+    V+P + HY  +VDLLG
Sbjct: 411 FDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLG 470

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           R+GRL++A +++KS+ M     +W  LLGAC++YG+VE+ +  + +L+ +  ++  ++++
Sbjct: 471 RSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIM 530

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+Y+A   W D  +VR  MK R + + PG S+IE G  IH+F   D+ H +  EI+ K
Sbjct: 531 LSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTK 590

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+E++ KI+E G A  T  VLHDI EE K + +  HSEKLA+AFGL+ T     + + KN
Sbjct: 591 LEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKN 650

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRIC DCH   K  S +  R II+RD  RFH F DG CSC+DYW
Sbjct: 651 LRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 149/276 (53%), Gaps = 5/276 (1%)

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           FA+ +C  V        IH+ V++    +D  +G  L+ +Y K+G    A+++FDEM  +
Sbjct: 127 FAISSCTSVSY---CSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNK 183

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D+ SWN+L++GL+        ++ F RM+ E   +PNEVT+L  ++AC  +GA  EG  +
Sbjct: 184 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSL 243

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H  + +  +     V N++I+MY K G LD A ++F+ +  R SLV+WN+MV+    +G 
Sbjct: 244 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMVVIHNHNGY 302

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
             + ++LF  M RAG+ PD  + +A L AC   GL      +   +  CG   ++    +
Sbjct: 303 AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATA 362

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +++L  + GRL  + DI + +    D + W  +L  
Sbjct: 363 LLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAG 397



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 131/263 (49%), Gaps = 4/263 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  Y    L  L  A  LF ++   S   +N+++    H+      +  +  M R
Sbjct: 258 VVNSLINMYG--KLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKR 315

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D  T    L+AC       +   IH+++ R GF AD ++ T LL++YAK+G + +
Sbjct: 316 AGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNA 375

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           ++ +F+E+  RD  +W A++AG A      EA+ LF  M  EGV + + VT    L+AC 
Sbjct: 376 SEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGV-EVDHVTFTHLLSACS 434

Query: 222 HLGAWKEGDKIHEYIRE-ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
           H G  +EG K  E + E  R++  +   + ++D+  + G L+ A+E+  ++    S   W
Sbjct: 435 HSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVW 494

Query: 281 NTMVMAFAVHGDGPRALELFEQM 303
             ++ A  V+G+     E+ EQ+
Sbjct: 495 GALLGACRVYGNVELGKEVAEQL 517


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 197/528 (37%), Positives = 310/528 (58%), Gaps = 4/528 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  +F ++       +NA++ GL         +  +R+M       D  T      
Sbjct: 125 DLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFS 184

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
             A + ++    QIH + +++G   D ++ ++L  +Y + G++   + V   M VR++ +
Sbjct: 185 GSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVA 244

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN LI G AQ       + L+K MK+ G  +PN++T +  L++C  L    +G +IH   
Sbjct: 245 WNTLIMGNAQNGCPETVLYLYKMMKISGC-RPNKITFVTVLSSCSDLAIRGQGQQIHAEA 303

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +      V V +++I MY+KCG L  A + F   +  +  V W++M+ A+  HG G  A
Sbjct: 304 IKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSE-REDEDEVMWSSMISAYGFHGQGDEA 362

Query: 297 LELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVV 354
           +ELF  M  +  ++ ++V++L  L AC+H+GL D G+ LF+ M    G KP +KHY  VV
Sbjct: 363 IELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVV 422

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLLGRAG L +A  I++S+ + TD+V+W+TLL AC ++ + EMA+   ++++++  N+  
Sbjct: 423 DLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSA 482

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
            +VLL+N++A+ +RW DV  VRK+M++++VKK  G S+ E  G +H+F   D+S  K +E
Sbjct: 483 CYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKE 542

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY  L E+  ++K  GY   T+ VLHD+ EEEKE+ L  HSEKLAVAF L+   E   I+
Sbjct: 543 IYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIR 602

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + KNLR+C DCH   K IS + NREI +RD  RFH F +G CSC DYW
Sbjct: 603 IIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 156/341 (45%), Gaps = 34/341 (9%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV------------------ 156
           +++C    +L    Q+H  ++  GF +D  +   L+ +Y+K+                  
Sbjct: 51  IQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNY 110

Query: 157 -------------GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
                        G++V+A+KVFDEM  R + +WNA+IAGL Q     E + LF+ M   
Sbjct: 111 MSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGL 170

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           G F P+E T+    +    L +   G +IH Y  +  L++++VV +++  MY + G L  
Sbjct: 171 G-FSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 229

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
              V  ++  R +LV WNT++M  A +G     L L++ M  +G +P+ ++++  L +C+
Sbjct: 230 GEIVIRSMPVR-NLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 288

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
              +   G ++       G    +    S++ +  + G L +A     S     D V+W 
Sbjct: 289 DLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAF-SEREDEDEVMWS 347

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           +++ A   +G  + A      + E  +    +   L+ LYA
Sbjct: 348 SMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYA 388



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 43/235 (18%)

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
           ++GNL     + F+R ++  +F  N       + +C    +   G ++H  +       +
Sbjct: 25  SKGNLR----EAFQRFRL-NIFT-NTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSD 78

Query: 245 VVVCNAVIDMYAKCGLLDKAF-------------------------------EVFDNIKC 273
             +CN ++ MY+K G    A                                +VFD +  
Sbjct: 79  KFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPD 138

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL--VDDG 331
           RK L TWN M+            L LF +M   G  PD+  Y         AGL  V  G
Sbjct: 139 RK-LTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDE--YTLGSVFSGSAGLRSVSIG 195

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            ++       G++ ++    S+  +  R G+LQ+   +++S+ +  ++V W TL+
Sbjct: 196 QQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPV-RNLVAWNTLI 249


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 210/587 (35%), Positives = 337/587 (57%), Gaps = 17/587 (2%)

Query: 3   NLNALLQKC-----SSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE 57
           +L  L++ C     + +G + H H++        +G     +F V + ++  YA   L  
Sbjct: 74  SLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIF-VSNSLVSMYAKFGL-- 130

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHS-SKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           L  A  LF ++   +   +  V+  LA++  +   A+ +   M R     +A T S  L 
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLG 190

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC     L     +H+  ++ G  +D  + ++L+D Y K+G++   ++VFDEM  RD+  
Sbjct: 191 ACGTPGVL---AALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVV 247

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN++IAG AQ      A++LF RMK  G F  N+ T+   L AC  +   + G ++H ++
Sbjct: 248 WNSIIAGFAQSGDGVGAIELFMRMKDAG-FSANQGTLTSVLRACTGMVMLEAGRQVHAHV 306

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +   D+  ++ NA++DMY KCG L+ A  +F  +  ++ +++W+TM+   A +G    A
Sbjct: 307 LKYERDL--ILHNALLDMYCKCGSLEDAEALFHRMP-QRDVISWSTMISGLAQNGKSAEA 363

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVD 355
           L +F+ M   GV P+ ++ +  L AC+HAGLV+DG   F SM    G++P  +H+  +VD
Sbjct: 364 LRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVD 423

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LLGRAG+L EA + ++ +++  D V+W+TLLGAC+++    +A  A+R+++++  ++ G 
Sbjct: 424 LLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGA 483

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
            VLLSN YA   +W D  +  KAM++R +KK PG S+IE+   +H F   D SH     I
Sbjct: 484 RVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTI 543

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
            ++L+ ++ +I   GY   T  VL D+  E+KE+ L YHSEK+A+AFG +       I++
Sbjct: 544 VQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMHAVGGKPIRI 603

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            KNLRIC DCH   KL+SK   R II+RD VRFH F+DGACSC DYW
Sbjct: 604 MKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 162/356 (45%), Gaps = 18/356 (5%)

Query: 41  PVRSKIIEFYALSPLNELAYAHALFRQINA-PSTNDFNAVLRGLAHSSKPTNAVLWYRQM 99
           P+R  +   +   P N LA      R ++  P  +   A+   L        A+     +
Sbjct: 4   PIRVLMKSLFKRPPRNRLAATRRSSRPVHTQPPPHPSLAIFSRLCVEGPFPAALALLPDL 63

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLA--------DALLGTTLLD 151
                R+D ++ +  +K C R     +   IH HV  HG L+           +  +L+ 
Sbjct: 64  AAAGLRADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVS 123

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN-LASEAVDLFKRMKMEGVFKPNE 210
           +YAK G +  A ++FD M  R++ +W  ++A LA  +    EA+     M  +GV  PN 
Sbjct: 124 MYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGV-APNA 182

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
            T    L ACG  G       +H    +  LD +V V +++ID Y K G LD    VFD 
Sbjct: 183 YTFSSVLGACGTPGVLA---ALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDE 239

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
           +  R  LV WN+++  FA  GDG  A+ELF +M  AG   +  +  + L AC    +++ 
Sbjct: 240 MVTR-DLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEA 298

Query: 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           G ++   +     + ++  + +++D+  + G L++A  +   +    D++ W T++
Sbjct: 299 GRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQ-RDVISWSTMI 351


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 194/508 (38%), Positives = 297/508 (58%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G +H  +   A   +  + +     +  T +  LK+ A + A   T Q+H+   
Sbjct: 372 WNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAE 431

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + GF+ DA +   L+D Y K   +  A +VF+E    DI +  ++I  L+Q +    A+ 
Sbjct: 432 KIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIK 491

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF  M  +G+ +P+   +   L AC  L A+++G ++H ++ + +   +    NA++  Y
Sbjct: 492 LFMEMLRKGL-EPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTY 550

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG ++ A   F ++   + +V+W+ M+   A HG G RALELF +M   G+ P+ ++ 
Sbjct: 551 AKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITM 609

Query: 316 LAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            + LCACNHAGLVD+  R FNSM    G+    +HY  ++DLLGRAG+L +A ++V S+ 
Sbjct: 610 TSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMP 669

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
              +  +W  LLGA +++ D E+ ++A+ KL  +     G  VLL+N YA+   W++V +
Sbjct: 670 FQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAK 729

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VRK MK+ ++KK P  S++EV   +H F   DKSH   +EIY KLDE+   + + GY   
Sbjct: 730 VRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPN 789

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
               LHD+   EKE  L +HSE+LAVAF L+ST     I+V KNLRICRDCH   K IS 
Sbjct: 790 VDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISN 849

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +REII+RD  RFH F+DG CSC DYW
Sbjct: 850 IVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 2/236 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L+ A  +F + ++       +++  L+       A+  + +MLR     D    S  L A
Sbjct: 455 LSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA + A  +  Q+H+H+++  F++DA  G  L+  YAK G I  A+  F  +  R + SW
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSW 574

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           +A+I GLAQ      A++LF RM  EG+  PN +T+   L AC H G   E  +    ++
Sbjct: 575 SAMIGGLAQHGHGKRALELFGRMVDEGI-NPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633

Query: 238 EE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           E   +D      + +ID+  + G LD A E+ +++  + +   W  ++ A  VH D
Sbjct: 634 EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKD 689



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 170/389 (43%), Gaps = 7/389 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +Q+ A +   G ++  +F   + +++ Y    +  +  A  +F ++       +NA++ G
Sbjct: 222 RQVHAMVVRMG-YEKDVFTANA-LVDMYV--KMGRVDIASVIFEKMPDSDVVSWNALISG 277

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              +     A+    QM       +    S  LKACA   A     QIH  +++    +D
Sbjct: 278 CVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSD 337

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G  L+D+YAK   +  A KVFD M  RD+  WNALI+G + G    EA  +F  ++ 
Sbjct: 338 DYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRK 397

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           EG+   N  T+   L +   L A     ++H    +     +  V N +ID Y KC  L 
Sbjct: 398 EGL-GVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLS 456

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VF+       ++   +M+ A +    G  A++LF +M R G++PD     + L AC
Sbjct: 457 DAIRVFEECS-SGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
                 + G ++   +       +     ++V    + G +++A ++  S      +V W
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDA-ELAFSSLPERGVVSW 574

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSN 411
             ++G    +G  + A     ++V+ G N
Sbjct: 575 SAMIGGLAQHGHGKRALELFGRMVDEGIN 603



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 136/288 (47%), Gaps = 11/288 (3%)

Query: 108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD 167
           A T S  L   A   AL     +H+++L+ GFLA   L   L+  Y+K      A++VFD
Sbjct: 4   AGTISQQLTRYAAAQALLPGAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFD 61

Query: 168 EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC--GHLGA 225
           E+      SW++L+   +   L   A+  F  M+ EGV   NE  +   L       LGA
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC-CNEFALPVVLKCVPDAQLGA 120

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
                ++H          +V V NA++ MY   G +D A  VFD     ++ V+WN ++ 
Sbjct: 121 -----QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMS 175

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
           A+  +     A+++F +M  +G++P +  +   + AC  +  +D G ++   +   G + 
Sbjct: 176 AYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEK 235

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           ++    ++VD+  + GR+  A  I + +   +D+V W  L+  C L G
Sbjct: 236 DVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNG 282



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 2/244 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++     + +  +A+  + +M+    +      S  + AC     +    Q+H+ V+
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVV 229

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R G+  D      L+D+Y K+G +  A  +F++M   D+ SWNALI+G         A++
Sbjct: 230 RMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIE 289

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           L  +MK  G+  PN   +   L AC   GA+  G +IH ++ +   D +  +   ++DMY
Sbjct: 290 LLLQMKSSGLV-PNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMY 348

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AK   LD A +VFD +  R  L+ WN ++   +  G    A  +F  + + G+  +  + 
Sbjct: 349 AKNHFLDDAMKVFDWMSHR-DLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTL 407

Query: 316 LAAL 319
            A L
Sbjct: 408 AAVL 411


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 174/369 (47%), Positives = 246/369 (66%), Gaps = 2/369 (0%)

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
           G L AC  + A ++G ++H  I +   +++V V N ++DMY KCG ++ A EVF  +   
Sbjct: 3   GILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKL-LE 61

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
             + +WN M+   A HG G  A+ LFEQM + GVKP+ ++++  L  C+HAGLVD+G   
Sbjct: 62  PDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNY 121

Query: 335 FNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           F+SM  + G+ P  +HY  +VDL GRAG L EA + +  + +  +  +W +LLGAC+++G
Sbjct: 122 FDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHG 181

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           ++E+AE A  +L+E+   N G +VLLSN+YAA  RWDD G+VRK MK+R VKK PG S+I
Sbjct: 182 NIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWI 241

Query: 454 EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           EV   +H F   D SH +  EIYE L+ +  ++K  GY   T+ VLHD+ EE+KE  L +
Sbjct: 242 EVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGH 301

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSEKLA+AFG+IST   T+I+V KNLR+C DCH   K IS++ +REI++RD  RFH FKD
Sbjct: 302 HSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKD 361

Query: 574 GACSCKDYW 582
           G CSC DYW
Sbjct: 362 GQCSCGDYW 370



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 106/190 (55%), Gaps = 2/190 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ACA V AL +  Q+H+ +++ GF  D  +   L+D+Y K G I  A++VF ++   D+
Sbjct: 5   LRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDV 64

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
           ASWNA+I+GLAQ     EAV LF++M   GV KPN++T +  L+ C H G   EG    +
Sbjct: 65  ASWNAMISGLAQHGCGKEAVLLFEQMLQTGV-KPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 235 YI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            + R+  +       + ++D++ + G LD+A    + +    +   W +++ A  VHG+ 
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNI 183

Query: 294 PRALELFEQM 303
             A    EQ+
Sbjct: 184 ELAERAVEQL 193



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 16/240 (6%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           +  +L+ C+S  A+     KQ+ A +   G F+  +  V + +++ Y       +  A  
Sbjct: 1   MAGILRACASVAALEQG--KQVHADIIKIG-FELDV-SVSNGLVDMYG--KCGRIEDAQE 54

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++  P    +NA++ GLA       AVL + QML+   + + +T    L  C+    
Sbjct: 55  VFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGL 114

Query: 124 LFETLQIHSHVLR-HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS-WNALI 181
           + E       + R HG    A   + ++D++ + G +  A    ++M V   AS W +L+
Sbjct: 115 VDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLL 174

Query: 182 AGL-AQGN--LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
                 GN  LA  AV+    +  E    P    +L  + A    G W +  K+ + +++
Sbjct: 175 GACRVHGNIELAERAVEQLIELTPE---NPGTYVLLSNIYAAA--GRWDDAGKVRKMMKD 229


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 194/508 (38%), Positives = 297/508 (58%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G +H  +   A   +  + +     +  T +  LK+ A + A   T Q+H+   
Sbjct: 279 WNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAE 338

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + GF+ DA +   L+D Y K   +  A +VF+E    DI +  ++I  L+Q +    A+ 
Sbjct: 339 KIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIK 398

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF  M  +G+ +P+   +   L AC  L A+++G ++H ++ + +   +    NA++  Y
Sbjct: 399 LFMEMLRKGL-EPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTY 457

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG ++ A   F ++   + +V+W+ M+   A HG G RALELF +M   G+ P+ ++ 
Sbjct: 458 AKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITM 516

Query: 316 LAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            + LCACNHAGLVD+  R FNSM    G+    +HY  ++DLLGRAG+L +A ++V S+ 
Sbjct: 517 TSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMP 576

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
              +  +W  LLGA +++ D E+ ++A+ KL  +     G  VLL+N YA+   W++V +
Sbjct: 577 FQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAK 636

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VRK MK+ ++KK P  S++EV   +H F   DKSH   +EIY KLDE+   + + GY   
Sbjct: 637 VRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPN 696

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
               LHD+   EKE  L +HSE+LAVAF L+ST     I+V KNLRICRDCH   K IS 
Sbjct: 697 VDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISN 756

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +REII+RD  RFH F+DG CSC DYW
Sbjct: 757 IVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 2/236 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L+ A  +F + ++       +++  L+       A+  + +MLR     D    S  L A
Sbjct: 362 LSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 421

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CA + A  +  Q+H+H+++  F++DA  G  L+  YAK G I  A+  F  +  R + SW
Sbjct: 422 CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSW 481

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           +A+I GLAQ      A++LF RM  EG+  PN +T+   L AC H G   E  +    ++
Sbjct: 482 SAMIGGLAQHGHGKRALELFGRMVDEGI-NPNHITMTSVLCACNHAGLVDEAKRYFNSMK 540

Query: 238 EE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           E   +D      + +ID+  + G LD A E+ +++  + +   W  ++ A  VH D
Sbjct: 541 EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKD 596



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 138/292 (47%), Gaps = 6/292 (2%)

Query: 105 RSDALTCS-FALKACARVLALFET-LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA 162
           R++ + C+ FAL    + +   +   Q+H+  +  GF +D  +   L+ +Y   G +  A
Sbjct: 2   RAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDA 61

Query: 163 KKVFDEMGV-RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           ++VFDE G  R+  SWN L++   + +   +A+ +F  M   G+ +P E      + AC 
Sbjct: 62  RRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI-QPTEFGFSCVVNACT 120

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
                  G ++H  +     + +V   NA++DMY K G +D A  +F+ +     +V+WN
Sbjct: 121 GSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWN 179

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            ++    ++G   RA+EL  QM  +G+ P+     + L AC  AG  D G ++   M   
Sbjct: 180 ALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA 239

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
               +      +VD+  +   L +A  +   +S   D++LW  L+  C   G
Sbjct: 240 NADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSH-RDLILWNALISGCSHGG 290



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 170/389 (43%), Gaps = 7/389 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +Q+ A +   G ++  +F   + +++ Y    +  +  A  +F ++       +NA++ G
Sbjct: 129 RQVHAMVVRMG-YEKDVFTANA-LVDMYV--KMGRVDIASVIFEKMPDSDVVSWNALISG 184

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              +     A+    QM       +    S  LKACA   A     QIH  +++    +D
Sbjct: 185 CVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSD 244

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G  L+D+YAK   +  A KVFD M  RD+  WNALI+G + G    EA  +F  ++ 
Sbjct: 245 DYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRK 304

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           EG+   N  T+   L +   L A     ++H    +     +  V N +ID Y KC  L 
Sbjct: 305 EGL-GVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLS 363

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A  VF+       ++   +M+ A +    G  A++LF +M R G++PD     + L AC
Sbjct: 364 DAIRVFEECS-SGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 422

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
                 + G ++   +       +     ++V    + G +++A ++  S      +V W
Sbjct: 423 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDA-ELAFSSLPERGVVSW 481

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSN 411
             ++G    +G  + A     ++V+ G N
Sbjct: 482 SAMIGGLAQHGHGKRALELFGRMVDEGIN 510



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 2/244 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++     + +  +A+  + +M+    +      S  + AC     +    Q+H+ V+
Sbjct: 77  WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVV 136

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R G+  D      L+D+Y K+G +  A  +F++M   D+ SWNALI+G         A++
Sbjct: 137 RMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIE 196

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           L  +MK  G+  PN   +   L AC   GA+  G +IH ++ +   D +  +   ++DMY
Sbjct: 197 LLLQMKSSGLV-PNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMY 255

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AK   LD A +VFD +  R  L+ WN ++   +  G    A  +F  + + G+  +  + 
Sbjct: 256 AKNHFLDDAMKVFDWMSHR-DLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTL 314

Query: 316 LAAL 319
            A L
Sbjct: 315 AAVL 318


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 293/446 (65%), Gaps = 9/446 (2%)

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            + T ++  Y+K G +  A+ +FD+   +D+  W  +I+   + +   EA+ +F+ M   
Sbjct: 279 FVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCS 338

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           G+ KP+ V++   ++AC +LG   +   +H  I    L+  + + NA+I+MYAKCG LD 
Sbjct: 339 GI-KPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDA 397

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
             +VF+ +  R+++V+W++M+ A ++HG+   AL LF +M +  V+P++V+++  L  C+
Sbjct: 398 TRDVFEKMP-RRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCS 456

Query: 324 HAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           H+GLV++G ++F SM +   + P ++HYG +VDL GRA  L+EA ++++S+ + +++V+W
Sbjct: 457 HSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIW 516

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
            +L+ AC+++G++E+ + A+++++E+  ++ G  VL+SN+YA  +RW+DV  +R+ M+ +
Sbjct: 517 GSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEK 576

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
           +V K  G S I+  G  H+F   DK H +  EIY KLDE++ K+K  GY      VL D+
Sbjct: 577 NVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDV 636

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATS------IQVFKNLRICRDCHDVIKLISKVY 556
            EEEK++ + +HSEKLA+ FGL++  +         I++ KNLR+C DCH   KL+SKVY
Sbjct: 637 EEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVY 696

Query: 557 NREIIVRDRVRFHRFKDGACSCKDYW 582
            REIIVRDR RFH +K+G CSC+DYW
Sbjct: 697 EREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 211/423 (49%), Gaps = 43/423 (10%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           N +L+K S   +++HI  KQL AH+  T     KL    S +      S    L+YA  +
Sbjct: 13  NTILEKLSFCKSLNHI--KQLHAHILRT-VINHKL---NSFLFNLSVSSSSINLSYALNV 66

Query: 65  FRQINAPSTND-FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           F  I +P  +  FN  LR L+ SS+P   +L+Y+++     R D  +    LKA ++V A
Sbjct: 67  FSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSA 126

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           LFE +++H    +   L D  + T  +D+YA  G I  A+ VFDEM  RD+ +WN +I  
Sbjct: 127 LFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIER 186

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             +  L  EA  LF+ MK   V  P+E+ +   ++ACG  G  +    I+E++ E  + M
Sbjct: 187 YCRFGLVDEAFKLFEEMKDSNVM-PDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRM 245

Query: 244 -------------------------------NVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
                                          N+ V  A++  Y+KCG LD A  +FD  +
Sbjct: 246 DTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTE 305

Query: 273 CRKSLVTWNTMVMAFAVHGDGPR-ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
            +K LV W TM+ A+ V  D P+ AL +FE+M  +G+KPD VS  + + AC + G++D  
Sbjct: 306 -KKDLVCWTTMISAY-VESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKA 363

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             + + +   G++  +    +++++  + G L    D+ + +    ++V W +++ A  +
Sbjct: 364 KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPR-RNVVSWSSMINALSM 422

Query: 392 YGD 394
           +G+
Sbjct: 423 HGE 425



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 122/233 (52%), Gaps = 2/233 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F Q        +  ++     S  P  A+  + +M     + D ++    + ACA 
Sbjct: 297 AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACAN 356

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L +   +HS +  +G  ++  +   L+++YAK G + + + VF++M  R++ SW+++
Sbjct: 357 LGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSM 416

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE- 239
           I  L+    AS+A+ LF RMK E V +PNEVT +G L  C H G  +EG KI   + +E 
Sbjct: 417 INALSMHGEASDALSLFARMKQENV-EPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEY 475

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
            +   +     ++D++ +  LL +A EV +++    ++V W +++ A  +HG+
Sbjct: 476 NITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGE 528


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 210/601 (34%), Positives = 320/601 (53%), Gaps = 43/601 (7%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLN-ELAYAHALFRQINAPSTNDFNAV 79
           H+ Q  A L   G   ++  P     +    L+  +   +Y   LFR  N  S    N +
Sbjct: 41  HVLQAHARLAVLGLATARALPQLLAALPRLTLAAADVSHSYPLLLFRCSNCTSAFASNHL 100

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA------LKACARVLALFETLQIHSH 133
           LR L H   P    L+ R   R  H    L  S +        A   + + F    +H+ 
Sbjct: 101 LRVLPH---PLPLRLFPRLPRRNPHSFTFLLASLSNHLDTEPAAAGSIASRFMGTHVHAL 157

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG-VRDIASWNALIAGLAQGNLASE 192
            ++ G   D  +    +  Y   G++ + +KVFDE+  VRD+ +WNA++AG  +  +   
Sbjct: 158 AVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGV 217

Query: 193 AVDLFKRMKME----------------------GVF--------KPNEVTVLGALAACGH 222
           A ++F  M +                       GVF        K NE  ++ AL+A   
Sbjct: 218 AREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQ 277

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           LG  ++G  +HE ++   + M+V +  A+IDMY+KCG +  A EVFD +  R+ +  WN+
Sbjct: 278 LGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMP-RRDVFAWNS 336

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NC 341
           M+   A HG G  A++LFE+    G  P  ++++  L AC+  GLVD+G R F  MA   
Sbjct: 337 MICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKY 396

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIA 401
            ++  M+HYG +VDLL RAG +QEA ++++ + +  D VLW T+L AC+ +G V++    
Sbjct: 397 DIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITV 456

Query: 402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHK 461
             KL+E+   + G +VLL+++YA  ++WD+V +VRK M NR   K  G+S +E  G++HK
Sbjct: 457 GNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHK 516

Query: 462 FFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVA 521
           F   D +H     IY  L  I  ++ E GY    S VLHDIG+EEK +A+  HSE+LA+A
Sbjct: 517 FLVGDMNHKDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIA 576

Query: 522 FGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDY 581
           +G I     + I++ KNL +C DCH+  K+++KV+ REI+VRD  RFH  KDG CSC DY
Sbjct: 577 YGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDY 636

Query: 582 W 582
           W
Sbjct: 637 W 637


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 193/508 (37%), Positives = 302/508 (59%), Gaps = 3/508 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA++ G +H      ++  + +M +     +  T +  LK+ A + A+ +T Q+H+   
Sbjct: 374 WNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAE 433

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           + GFL+D+ +   L+D Y K   +  A KVF+E    +I ++ ++I  L+Q +   +A+ 
Sbjct: 434 KIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIK 493

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF  M  +G+ +P+   +   L AC  L A+++G ++H ++ + +   +V   NA++  Y
Sbjct: 494 LFMEMLRKGL-EPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTY 552

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           AKCG ++ A   F  +   K +V+W+ M+   A HG G RAL++F +M    + P+ ++ 
Sbjct: 553 AKCGSIEDADLAFSGLP-DKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITL 611

Query: 316 LAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
            + LCACNHAGLVD+    F+SM    G+    +HY  ++DLLGRAG+L +A ++V S+ 
Sbjct: 612 TSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMP 671

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
              +  +W  LL A +++ D E+ ++A+ KL  +     G  VLL+N YA+   WD+V +
Sbjct: 672 FEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAK 731

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           VRK MK+  VKK P  S++E+   +H F   DKSH + R+IY KL+E+   + + GY   
Sbjct: 732 VRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPN 791

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
               LHD+ + EKE  L +HSE+LAVAF LIST     I+V KNLRICRDCH   K ISK
Sbjct: 792 LEVDLHDVDKSEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISK 851

Query: 555 VYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +REII+RD  RFH F DGACSC DYW
Sbjct: 852 IVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 169/379 (44%), Gaps = 20/379 (5%)

Query: 18  SHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFN 77
           +HIH     AHL  +G   +     R+ ++ FY+   L     A  +F +   P    ++
Sbjct: 24  AHIH-----AHLLKSGLLHA----FRNHLLSFYSKCRLP--GSARRVFDETPDPCHVSWS 72

Query: 78  AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
           +++   ++++ P  A+  +R M     R +       LK CA    L   +Q+H+  +  
Sbjct: 73  SLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLK-CAPDAGL--GVQVHAVAVST 129

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-RDIASWNALIAGLAQGNLASEAVDL 196
           G   D  +   L+ +Y   G +  A++VFDE    R+  SWN +++   + +  S+AV+L
Sbjct: 130 GLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVEL 189

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           F  M   GV +PNE      + AC      + G K+H  +     D +V   NA++DMY+
Sbjct: 190 FGEMVWSGV-RPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYS 248

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           K G +  A  VF  +  +  +V+WN  +    +HG    ALEL  QM  +G+ P+  +  
Sbjct: 249 KLGDIHMAALVFGKVP-KTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLS 307

Query: 317 AAL-CACNHAGLVDDGVRLFNSMANCGVKPNMKHYG-SVVDLLGRAGRLQEACDIVKSVS 374
           + L              R  +         +  + G ++VD+  + G L +A  + + + 
Sbjct: 308 SILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIP 367

Query: 375 MGTDMVLWQTLLGACQLYG 393
              D++LW  L+  C   G
Sbjct: 368 R-KDLLLWNALISGCSHGG 385



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 131/275 (47%), Gaps = 7/275 (2%)

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           A   +LF    IH+H+L+ G L        LL  Y+K     SA++VFDE       SW+
Sbjct: 15  AATQSLFLGAHIHAHLLKSGLLH--AFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWS 72

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           +L+   +   L  EA+  F+ M+  GV + NE  +   L      G    G ++H     
Sbjct: 73  SLVTAYSNNALPREALAAFRAMRARGV-RCNEFALPIVLKCAPDAGL---GVQVHAVAVS 128

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
             L  ++ V NA++ MY   G +D+A  VFD     ++ V+WN M+ AF  +     A+E
Sbjct: 129 TGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVE 188

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LF +M  +GV+P++  +   + AC  +  ++ G ++   +   G   ++    ++VD+  
Sbjct: 189 LFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYS 248

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + G +  A  +   V   TD+V W   +  C L+G
Sbjct: 249 KLGDIHMAALVFGKVPK-TDVVSWNAFISGCVLHG 282



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 128/256 (50%), Gaps = 7/256 (2%)

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
           R  NA S   +N ++     + + ++AV  + +M+    R +    S  + AC     L 
Sbjct: 163 RDRNAVS---WNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLE 219

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              ++H+ V+R G+  D      L+D+Y+K+G+I  A  VF ++   D+ SWNA I+G  
Sbjct: 220 AGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCV 279

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL--AACGHLGAWKEGDKIHEYIREERLDM 243
                  A++L  +MK  G+  PN  T+   L   A    GA+  G +IH ++ +   D 
Sbjct: 280 LHGHDQHALELLLQMKSSGLV-PNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADS 338

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           +  +  A++DMYAK GLLD A +VF+ I  RK L+ WN ++   +  G    +L LF +M
Sbjct: 339 DDYIGVALVDMYAKYGLLDDARKVFEWIP-RKDLLLWNALISGCSHGGCHGESLSLFCRM 397

Query: 304 GRAGVKPDDVSYLAAL 319
            + G   +  +  A L
Sbjct: 398 RKEGSDINRTTLAAVL 413


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 203/578 (35%), Positives = 331/578 (57%), Gaps = 10/578 (1%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +L  C+ +G V     KQ   +L  +G    +   V++ +I  Y  S    +  A  +  
Sbjct: 134 VLSCCADSGRVKEG--KQCHGYLLKSGLLLHQY--VKNALIHMY--SRCFHVDSAMQILD 187

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            +       +N++L  L  S     A    ++M+      D++T    L  CA++  L  
Sbjct: 188 TVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQL 247

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
            LQIH+ +L+ G + D  + +TL+D Y K GE+++A+K FD +  R++ +W A++    Q
Sbjct: 248 GLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQ 307

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
                E ++LF +M++E   +PNE T    L AC  L A   GD +H  I       +++
Sbjct: 308 NGHFEETLNLFTKMELEDT-RPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLI 366

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V NA+I+MY+K G +D ++ VF N+  R  ++TWN M+  ++ HG G +AL +F+ M  A
Sbjct: 367 VGNALINMYSKSGNIDSSYNVFSNMMNR-DVITWNAMICGYSHHGLGKQALLVFQDMMSA 425

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNS-MANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           G  P+ V+++  L AC H  LV +G   F+  M    V+P ++HY  +V LLGRAG L E
Sbjct: 426 GECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDE 485

Query: 366 ACDIVKSVS-MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           A + +K+ + +  D+V W+TLL AC ++ +  + +  +  +++M  ++ G + LLSN++A
Sbjct: 486 AENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHA 545

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
              +WD V ++RK MK R++KK PG S++++    H F +   +H +  +I+EK+ +++ 
Sbjct: 546 KARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLA 605

Query: 485 KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
            IK  GYA     VLHD+ +E+KE  L +HSEKLA+A+GL+       I++ KNLR+C D
Sbjct: 606 MIKPLGYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDD 665

Query: 545 CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           CH  +KLISK  NR IIVRD  RFH F++G C+C D+W
Sbjct: 666 CHIAVKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 171/366 (46%), Gaps = 6/366 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACA 119
           A  LF ++   +   ++A++ G  H  +    +  +R ++   S   +    +  L  CA
Sbjct: 80  ARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCA 139

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
               + E  Q H ++L+ G L    +   L+ +Y++   + SA ++ D +   D+ S+N+
Sbjct: 140 DSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNS 199

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +++ L +     EA  + KRM  E V   + VT +  L  C  +   + G +IH  + + 
Sbjct: 200 ILSALVESGCRGEAAQVLKRMVDECVIW-DSVTYVSVLGLCAQIRDLQLGLQIHAQLLKT 258

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            L  +V V + +ID Y KCG +  A + FD ++ R ++V W  ++ A+  +G     L L
Sbjct: 259 GLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDR-NVVAWTAVLTAYLQNGHFEETLNL 317

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           F +M     +P++ ++   L AC     +  G  L   +   G K ++    +++++  +
Sbjct: 318 FTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSK 377

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           +G +  + ++  ++ M  D++ W  ++     +G  + A +  + +  M +  C ++V  
Sbjct: 378 SGNIDSSYNVFSNM-MNRDVITWNAMICGYSHHGLGKQALLVFQDM--MSAGECPNYVTF 434

Query: 420 SNLYAA 425
             + +A
Sbjct: 435 IGVLSA 440



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 111/219 (50%), Gaps = 1/219 (0%)

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
           +L+++Y+K G+   A+K+FD M  R++ SW+AL+ G        E + LF+ +       
Sbjct: 66  SLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAY 125

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           PNE      L+ C   G  KEG + H Y+ +  L ++  V NA+I MY++C  +D A ++
Sbjct: 126 PNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQI 185

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
            D +     + ++N+++ A    G    A ++ ++M    V  D V+Y++ L  C     
Sbjct: 186 LDTVP-GDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRD 244

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           +  G+++   +   G+  ++    +++D  G+ G +  A
Sbjct: 245 LQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNA 283



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           D ++   N++I++Y+KCG    A ++FD +  ++++V+W+ ++M +   G+    L LF 
Sbjct: 58  DSDITQINSLINLYSKCGQSKCARKLFDRM-LQRNVVSWSALMMGYLHKGEVLEVLGLFR 116

Query: 302 QM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +       P++  +   L  C  +G V +G +    +   G+  +     +++ +  R 
Sbjct: 117 NLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRC 176

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGA 388
             +  A  I+ +V  G D+  + ++L A
Sbjct: 177 FHVDSAMQILDTVP-GDDVFSYNSILSA 203


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 211/610 (34%), Positives = 336/610 (55%), Gaps = 60/610 (9%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYA--------LSPLNELAYAHALFRQINAPSTN 74
           ++L A + TTG   +    + + +++FYA            +E+ ++H          T 
Sbjct: 33  ERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPHSHK--------DTV 84

Query: 75  DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHV 134
           D+  ++      +    A+L + +M R   + D +T       CAR+  +    Q H  +
Sbjct: 85  DWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCM 144

Query: 135 LRHGFLADALLGTTLLDVYAKVGEIVSAKKVF---------------------------- 166
           ++ G          ++D+YAK G +  A++VF                            
Sbjct: 145 VKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGR 204

Query: 167 ---DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
              DEM  R+  +W  +IAG     L  E+  L + M  +   + N VT+   L AC   
Sbjct: 205 VVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQS 264

Query: 224 GAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           G    G  +H Y ++ +  ++N++V  A++DMYAKCG +  AF+ F  +  ++++V+WN 
Sbjct: 265 GDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMP-QRNVVSWNA 323

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC- 341
           M+   A+HG G  AL++F QM +   KPDDV++ + L AC+H+GLVD G   F ++ +  
Sbjct: 324 MLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVY 382

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIA 401
           G+ P ++HY  +VDLLGRAGRL+EA  +V+ + +  + V+  +LLG+C ++G +++ E  
Sbjct: 383 GITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHL 442

Query: 402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHK 461
            ++LV++   N    +LLSN+YA   + +    +R+ +K R +KKVPG S I VGG +H+
Sbjct: 443 LQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQ 502

Query: 462 FFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSC-------VLHD--IGEEEKENALC 512
           F   DKSH + RE+Y  LDE++ +++  GYA  T+         L D  + +EEKE AL 
Sbjct: 503 FSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALF 562

Query: 513 YHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
            HSEKLA+ FGLIST     + +FKNLRIC+DCH  IK++SK+YNREI++RDR RFH FK
Sbjct: 563 SHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFK 622

Query: 573 DGACSCKDYW 582
           +G+CSC DYW
Sbjct: 623 EGSCSCCDYW 632


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 194/522 (37%), Positives = 308/522 (59%), Gaps = 7/522 (1%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF ++       + +++ GL  + K   A+  +++MLR        T +  L ACA  + 
Sbjct: 158 LFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVE 217

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
               +Q+H HV++ G      +  +L+  YA   +I  A K+F+E   +++  W AL+  
Sbjct: 218 FNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTA 277

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
               N   +A+ +F  M   G   PN+ T    L AC  L A  +G +IH    +  L+ 
Sbjct: 278 YVWNNKHQDALRVFGDMTKMGAL-PNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLET 336

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           +V V N+++ MY +CG ++ A  VF NI   K +V+WN++++  A HG G  AL  F QM
Sbjct: 337 DVFVGNSLVVMYTECGNVNSAVAVFRNIN-EKDIVSWNSIIVGSAQHGFGLWALIFFNQM 395

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM---KHYGSVVDLLGRA 360
            R GV P+++++   L AC+ +G++  G   F  ++    K N+   +HY  +VD+LGR 
Sbjct: 396 IRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISR--YKSNVLRPQHYACMVDILGRC 453

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G+L EA ++V+ + +  + ++W  LL AC+++ ++E+AE A++ ++++  N    +VLLS
Sbjct: 454 GKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLS 513

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA+  RW DV R+R  MK   + K PG S++ + G  H+F ++D+SH     IYEKLD
Sbjct: 514 NIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLD 573

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
            +  K+KE+GY       LHD+ +E+KE  L +HSE+LA+AFGL+ST E ++I V KNLR
Sbjct: 574 WLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERLAIAFGLVSTVEGSTITVMKNLR 633

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +C DCH VIKL+SK+  R+I+VRD  RFH FK+G CSC DYW
Sbjct: 634 VCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSDYW 675



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 132/272 (48%), Gaps = 10/272 (3%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           Q+  H+   G F  +   V   +I FYA     ++ +AH +F +    +   + A+L   
Sbjct: 223 QVHGHVVKLGCFFHEFISV--SLITFYA--NCMKIEHAHKIFNETLTKNVVKWTALLTAY 278

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
             ++K  +A+  +  M +     +  T S  LKAC  + AL +  +IH+  ++ G   D 
Sbjct: 279 VWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDV 338

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            +G +L+ +Y + G + SA  VF  +  +DI SWN++I G AQ      A+  F +M   
Sbjct: 339 FVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRR 398

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN---AVIDMYAKCGL 260
           GV  PNE+T  G L+AC   G   +G    EYI   R   NV+       ++D+  +CG 
Sbjct: 399 GV-DPNEITFTGLLSACSRSGMLLKGRCFFEYI--SRYKSNVLRPQHYACMVDILGRCGK 455

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           LD+A E+   +  + + + W  ++ A  VH +
Sbjct: 456 LDEAEELVRYMPVKANSMIWLALLSACRVHSN 487



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 123/257 (47%), Gaps = 3/257 (1%)

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           Y + G +    ++F+EM VRD+ SW ++I GL     + EA+ +FK+M   GV +P   T
Sbjct: 146 YFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGV-EPTWST 204

Query: 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
               L+AC +   +  G ++H ++ +     +  +  ++I  YA C  ++ A ++F N  
Sbjct: 205 FACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIF-NET 263

Query: 273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             K++V W  ++ A+  +     AL +F  M + G  P+  ++   L AC     +D G 
Sbjct: 264 LTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGK 323

Query: 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            +       G++ ++    S+V +    G +  A  + ++++   D+V W +++     +
Sbjct: 324 EIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNIN-EKDIVSWNSIIVGSAQH 382

Query: 393 GDVEMAEIASRKLVEMG 409
           G    A I   +++  G
Sbjct: 383 GFGLWALIFFNQMIRRG 399



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 125/266 (46%), Gaps = 28/266 (10%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           TT L  + K   +  A+ +FD++   ++  +  +IAG  + +   +A+ LF RM +  V 
Sbjct: 16  TTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVV 75

Query: 207 KPNEVTVLGALAACGHLG-AWKEGDKIHE------------YIREER--------LDM-- 243
             N  +++     CG+LG A +  D++ E            Y++  R        LDM  
Sbjct: 76  SWN--SMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHV 133

Query: 244 -NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302
            +V   NA++  Y + G +++   +F+ +  R  +++W +M+    ++G    AL +F++
Sbjct: 134 KDVAAWNAMVHGYFENGRVEEGVRLFEEMPVR-DVISWTSMIGGLDLNGKSEEALFVFKK 192

Query: 303 MGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362
           M R+GV+P   ++   L AC +A   + GV++   +   G   +     S++       +
Sbjct: 193 MLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMK 252

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGA 388
           ++ A  I    ++  ++V W  LL A
Sbjct: 253 IEHAHKIFNE-TLTKNVVKWTALLTA 277


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 197/528 (37%), Positives = 310/528 (58%), Gaps = 4/528 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  +F ++       +NA++ GL         +  +R+M       D  T      
Sbjct: 40  DLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFS 99

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
             A + ++    QIH + +++G   D ++ ++L  +Y + G++   + V   M VR++ +
Sbjct: 100 GSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVA 159

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN LI G AQ       + L+K MK+ G  +PN++T +  L++C  L    +G +IH   
Sbjct: 160 WNTLIMGNAQNGCPETVLYLYKMMKISGC-RPNKITFVTVLSSCSDLAIRGQGQQIHAEA 218

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +      V V +++I MY+KCG L  A + F   +  +  V W++M+ A+  HG G  A
Sbjct: 219 IKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSE-REDEDEVMWSSMISAYGFHGQGDEA 277

Query: 297 LELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVV 354
           +ELF  M  +  ++ ++V++L  L AC+H+GL D G+ LF+ M    G KP +KHY  VV
Sbjct: 278 IELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVV 337

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLLGRAG L +A  I++S+ + TD+V+W+TLL AC ++ + EMA+   ++++++  N+  
Sbjct: 338 DLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSA 397

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
            +VLL+N++A+ +RW DV  VRK+M++++VKK  G S+ E  G +H+F   D+S  K +E
Sbjct: 398 CYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKE 457

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY  L E+  ++K  GY   T+ VLHD+ EEEKE+ L  HSEKLAVAF L+   E   I+
Sbjct: 458 IYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIR 517

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + KNLR+C DCH   K IS + NREI +RD  RFH F +G CSC DYW
Sbjct: 518 IIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 565


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 192/522 (36%), Positives = 295/522 (56%), Gaps = 2/522 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F  I       +  ++ G A +  P  A+     MLR   R    T +  LKA   
Sbjct: 116 ARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGA 175

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
                   Q+H+  +++    D  +G+ LLD+YA+  ++  A +VFD +  ++  SWNAL
Sbjct: 176 CGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNAL 235

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IAG A+       +  F  M+  G F     T     +A   +GA ++G  +H ++ +  
Sbjct: 236 IAGFARKGDGETTLMKFAEMQRNG-FGATHFTYSSVFSALARIGALEQGRWVHAHMIKSG 294

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
             +   V N ++ MYAK G +  A +VFD +  ++ LVTWNTM+ AFA +G G  A+  F
Sbjct: 295 QKLTAFVANTILGMYAKSGSMVDARKVFDRVD-QRDLVTWNTMLTAFAQYGLGKEAVAHF 353

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
           E++ + G++ + +++L+ L AC+H GLV +G + F+ M +  V+P + HY S VDLLGRA
Sbjct: 354 EEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRA 413

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L+EA   V  + M     +W  LLGAC+++ + ++ + A+  + E+   + G  VLL 
Sbjct: 414 GLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLY 473

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA+  +WDD  RVRK MK   VKK P  S++E+   +H F   D +H K  EIY   +
Sbjct: 474 NIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWE 533

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           E+  +IK+ GY   T  VL  I E+E+E  L YHSEK+A+AF LI+     +I++ KN+R
Sbjct: 534 EVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIR 593

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IC DCH   + +S+V+ REI+VRD  RFH F +G+CSC DYW
Sbjct: 594 ICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 137/279 (49%), Gaps = 3/279 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           + ACA+   L     IHSH+ R     D  L  +L+ +Y K G +  A+ VFD +  RD+
Sbjct: 69  ITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDV 128

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW  LI G AQ ++ +EA+ L   M +   F+P+  T    L A G  G    G+++H 
Sbjct: 129 VSWTYLITGYAQNDMPAEALGLLPDM-LRARFRPSGFTFTSFLKAAGACGGRGIGEQMHA 187

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +  LD +V V +A++DMYA+C  +D A  VFD +   K+ V+WN ++  FA  GDG 
Sbjct: 188 LAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDS-KNEVSWNALIAGFARKGDGE 246

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
             L  F +M R G      +Y +   A    G ++ G  +   M   G K       +++
Sbjct: 247 TTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTIL 306

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            +  ++G + +A  +   V    D+V W T+L A   YG
Sbjct: 307 GMYAKSGSMVDARKVFDRVDQ-RDLVTWNTMLTAFAQYG 344



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 145/308 (47%), Gaps = 14/308 (4%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V S +++ YA     ++  A  +F  +++ +   +NA++ G A        ++ + +M R
Sbjct: 200 VGSALLDMYARC--QQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQR 257

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
               +   T S    A AR+ AL +   +H+H+++ G    A +  T+L +YAK G +V 
Sbjct: 258 NGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVD 317

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+KVFD +  RD+ +WN ++   AQ  L  EAV  F+ ++  G+ + N++T L  L AC 
Sbjct: 318 ARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGI-QLNQITFLSVLTACS 376

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
           H G  KEG +  + +++  ++  +    + +D+  + GLL +A      +    +   W 
Sbjct: 377 HGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWG 436

Query: 282 TMVMAFAVHGDGP----RALELFEQMGRAGVKPDDVSYLAALCAC-NHAGLVDDGVRLFN 336
            ++ A  +H +       A  +FE      + P+D      L       G  DD  R+  
Sbjct: 437 ALLGACRMHKNAKIGQYAADHVFE------LDPEDTGPPVLLYNIYASTGQWDDAARVRK 490

Query: 337 SMANCGVK 344
            M   GVK
Sbjct: 491 MMKATGVK 498


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 197/528 (37%), Positives = 310/528 (58%), Gaps = 4/528 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  +F ++       +NA++ GL         +  +R+M       D  T      
Sbjct: 38  DLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFS 97

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
             A + ++    QIH + +++G   D ++ ++L  +Y + G++   + V   M VR++ +
Sbjct: 98  GSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVA 157

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN LI G AQ       + L+K MK+ G  +PN++T +  L++C  L    +G +IH   
Sbjct: 158 WNTLIMGNAQNGCPETVLYLYKMMKISGC-RPNKITFVTVLSSCSDLAIRGQGQQIHAEA 216

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +      V V +++I MY+KCG L  A + F   +  +  V W++M+ A+  HG G  A
Sbjct: 217 IKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSE-REDEDEVMWSSMISAYGFHGQGDEA 275

Query: 297 LELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVV 354
           +ELF  M  +  ++ ++V++L  L AC+H+GL D G+ LF+ M    G KP +KHY  VV
Sbjct: 276 IELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVV 335

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLLGRAG L +A  I++S+ + TD+V+W+TLL AC ++ + EMA+   ++++++  N+  
Sbjct: 336 DLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSA 395

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
            +VLL+N++A+ +RW DV  VRK+M++++VKK  G S+ E  G +H+F   D+S  K +E
Sbjct: 396 CYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKE 455

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY  L E+  ++K  GY   T+ VLHD+ EEEKE+ L  HSEKLAVAF L+   E   I+
Sbjct: 456 IYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIR 515

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + KNLR+C DCH   K IS + NREI +RD  RFH F +G CSC DYW
Sbjct: 516 IIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 563


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 209/561 (37%), Positives = 307/561 (54%), Gaps = 42/561 (7%)

Query: 59  AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR------------- 105
           AY  ALFR+ N+ S    N +LR L H   P    L+ R   R  H              
Sbjct: 96  AYPLALFRRANSTSAFASNNLLRVLPH---PLPLTLFSRFRRRNPHSFTFLLASISNHLN 152

Query: 106 ---SDALTCSF--------ALKACARVLALFETLQIHSH-------VLRHGF-----LAD 142
                A  CSF        A+KA A          +H +        +R  F     + D
Sbjct: 153 AAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRD 212

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
            L    +L  Y + G +  A++VFDEM VRD  SW+ L+ G  +      A+ +F+ M  
Sbjct: 213 VLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVE 272

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           +GV +PN+  V+ AL+A   LG  + G  +H  ++   + + + V  A++DMYAKCG + 
Sbjct: 273 QGV-RPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVA 331

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A EVFD ++ R+ +  WN M+   A HG G  A+ELFE+    G+ P +V+++  L  C
Sbjct: 332 VAREVFDGMR-RRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGC 390

Query: 323 NHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           + +GLV +G R F  +     ++P M+HYG +VDLLGRAG + EA ++++ + +  D VL
Sbjct: 391 SRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVL 450

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W T+L +C+ +G V++      KL+E+   + G +VLLS +YA   +WD+V  VRK M +
Sbjct: 451 WGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSS 510

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
           R   K  G+S +E  G +HKF   D  H    +IY+ LD I  ++ E GY    S VLHD
Sbjct: 511 RGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHD 570

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           IGEEEK +A+  HSE+LA+A+G I     + I++ KNLR+C DCH+  K+++ V+ REII
Sbjct: 571 IGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREII 630

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRD  RFH  K+G CSC DYW
Sbjct: 631 VRDGSRFHHMKEGKCSCLDYW 651


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 189/530 (35%), Positives = 314/530 (59%), Gaps = 4/530 (0%)

Query: 55   LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
            L  +  A  + + +  P    +NA++ G A + +P  AV  Y+ +      ++ +T    
Sbjct: 1197 LGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSV 1256

Query: 115  LKACARVLALFE-TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
            L AC+    L +  + IH+H++  GF +D  +  +L+ +YAK G++ S+  +FD +G + 
Sbjct: 1257 LGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKS 1316

Query: 174  IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
              +WNA++A  A      EA+ +F  M+  GV   ++ +  G LAA  +L   +EG ++H
Sbjct: 1317 PITWNAMVAANAHHGCGEEALKIFGEMRNVGV-NLDQFSFSGGLAATANLAVLEEGQQLH 1375

Query: 234  EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
              + +   + ++ V NA +DMY KCG +    ++       +S ++WN ++ AFA HG  
Sbjct: 1376 GLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLSWNILISAFARHGCF 1434

Query: 294  PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGS 352
             +A E F +M + G KPD V++++ L ACNH GLVD+G+  ++SM    GV P ++H   
Sbjct: 1435 QKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVC 1494

Query: 353  VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
            ++DLLGR+GRL  A   +K + +  + + W++LL AC+++G++E+A   +  L+E+  ++
Sbjct: 1495 IIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSD 1554

Query: 413  CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW 472
               +VL SN+ A   +W+DV  +RK M + ++KK P  S++++   +H F   +K H + 
Sbjct: 1555 DSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQA 1614

Query: 473  REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
              I  KL E+M   KE GY   TS  LHD+ EE+KE  L  HSE+LA+AFGLI+T E+++
Sbjct: 1615 SRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESST 1674

Query: 533  IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +++FKNLR+C DCH V K +S +  R+I++RD  RFH F  G CSC DYW
Sbjct: 1675 LRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 143/460 (31%), Positives = 246/460 (53%), Gaps = 17/460 (3%)

Query: 33  GQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNA 92
           G+F   LF V+S +++F+  S   ++  A  LF  +       +NA++ G A      ++
Sbjct: 160 GRFVENLF-VKSALVDFH--SKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDS 216

Query: 93  VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV 152
              +R MLRG    D  T    L+A A    L    QIH  + + G+ +  ++   L++ 
Sbjct: 217 FCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINA 276

Query: 153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA-QGNLASEAVDLFKRMKMEGVFKPNEV 211
           YAK G + SAK +   M  +D+ S  ALI G A +G  + +A+DLFK M    +   ++V
Sbjct: 277 YAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNI-GMDDV 335

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
            +   L  C +L ++  G +IH +  + +   +V + NA+IDMYAK G ++ A   FD +
Sbjct: 336 ILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEM 395

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
           +  K++++W +++  +A HG G  A+ L+++M   G KP+DV++L+ L AC+H GL  +G
Sbjct: 396 E-EKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEG 454

Query: 332 VRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
              FN+M N   +KP  +HY  +VDL  R G L+EA +++  + +  +  LW  +LGA  
Sbjct: 455 CECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASS 514

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
           +YG + + + A+  L  M   N  ++V+L+++Y+A   WDD  ++RK M+ R  KK  G+
Sbjct: 515 IYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGY 574

Query: 451 SYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
           S          FF + K  +   ++   +    F I ++G
Sbjct: 575 S----------FFQATKKSIPLLQVQHGVSRRDFNILDFG 604



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 175/350 (50%), Gaps = 4/350 (1%)

Query: 61   AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
            A  +F+ +       +N+++       K  + +    ++L+     + +T + AL AC+ 
Sbjct: 1102 AELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSN 1161

Query: 121  VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
               L E+  +H+ ++  GF    ++G  L+ +Y K+G ++ AKKV   M   D  +WNAL
Sbjct: 1162 PECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNAL 1221

Query: 181  IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL-GAWKEGDKIHEYIREE 239
            I G A+    +EAV  +K ++ +G+   N +T++  L AC       K G  IH +I   
Sbjct: 1222 IGGHAENEEPNEAVKAYKLIREKGI-PANYITMVSVLGACSAPDDLLKHGMPIHAHIVLT 1280

Query: 240  RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
              + +  V N++I MYAKCG L+ +  +FD +   KS +TWN MV A A HG G  AL++
Sbjct: 1281 GFESDDYVKNSLITMYAKCGDLNSSNYIFDGLG-NKSPITWNAMVAANAHHGCGEEALKI 1339

Query: 300  FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
            F +M   GV  D  S+   L A  +  ++++G +L   +   G + ++    + +D+ G+
Sbjct: 1340 FGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGK 1399

Query: 360  AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
             G + +   ++    +    + W  L+ A   +G  + A     +++++G
Sbjct: 1400 CGEMHDVLKMLPQ-PINRSRLSWNILISAFARHGCFQKARETFHEMLKLG 1448



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 2/244 (0%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           IH+H++ +GF +D  L T L+  Y KVG++++A+ VFD M  R + SW A+++G +Q   
Sbjct: 52  IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 111

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             +A  LF  M+  GV K N+ T   AL AC  L     G ++   I++ R   N+ V +
Sbjct: 112 FEKAFVLFSDMRHCGV-KANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKS 170

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           A++D ++KCG ++ A  +F  +   + +V+WN M+  +AV G    +  +F  M R G+ 
Sbjct: 171 ALVDFHSKCGKMEDASYLFGTMM-ERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLV 229

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           PD  +  + L A    G +    ++   +   G        G +++   + G L+ A D+
Sbjct: 230 PDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDL 289

Query: 370 VKSV 373
            K +
Sbjct: 290 RKGM 293



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 167/347 (48%), Gaps = 7/347 (2%)

Query: 44   SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
            + +I  Y  S    + +A  +F ++   +   ++ +L G         AV  + QM    
Sbjct: 783  NTLINMY--SKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLG 840

Query: 104  HRSDALTCSFALKACARVLALF-ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA 162
               +    +  + AC+R   +  E  Q+H  V++ G L D  +GT L+  Y  +G + +A
Sbjct: 841  VEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNA 900

Query: 163  KKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
            +K+F+EM   ++ SW +L+ G +      E +++++RM+ EGV   N+ T     ++CG 
Sbjct: 901  QKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGV-SGNQNTFATVTSSCGL 959

Query: 223  LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
            L     G ++  +I +   + +V V N++I M++    +++A  VFD++     +++WN 
Sbjct: 960  LEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWNA 1018

Query: 283  MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
            M+ A+A HG    +L  F  M     + +  +  + L  C+    +  G  +   +   G
Sbjct: 1019 MISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLG 1078

Query: 343  VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
            +  N+    +++ L   AGR ++A ++V       D++ W +++ AC
Sbjct: 1079 LDSNVCICNTLLTLYSEAGRSEDA-ELVFQAMTERDLISWNSMM-AC 1123



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 189/419 (45%), Gaps = 11/419 (2%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           +LQ C    A    H+  +  HL T G F S L  + +K+I FY    + ++  A  +F 
Sbjct: 36  ILQLCIDKKAKKQGHL--IHTHLITNG-FGSDLH-LNTKLIIFYV--KVGDVIAARNVFD 89

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            +   S   + A++ G + + +   A + +  M     +++  T   AL+AC  +  L  
Sbjct: 90  GMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDM 149

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
            +Q+   + +  F+ +  + + L+D ++K G++  A  +F  M  RD+ SWNA+I G A 
Sbjct: 150 GIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAV 209

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
              A ++  +F+ M + G   P+  T+   L A    G     ++IH  I +       +
Sbjct: 210 QGFADDSFCMFRSM-LRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDI 268

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG-DGPRALELFEQMGR 305
           V   +I+ YAK G L  A ++   +  +K L +   ++  +A  G     AL+LF++M +
Sbjct: 269 VTGLLINAYAKNGSLRSAKDLRKGM-LKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQ 327

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
             +  DDV   + L  C +      G ++           ++    +++D+  ++G +++
Sbjct: 328 MNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIED 387

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           A      +    +++ W +L+     +G   MA ++  K +E       D   LS L+A
Sbjct: 388 AKRAFDEMEE-KNVISWTSLISGYAKHGYGHMA-VSLYKKMESKGFKPNDVTFLSLLFA 444



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 149/305 (48%), Gaps = 14/305 (4%)

Query: 97   RQMLRGSHRSDALTC----SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV 152
            +  L+  H    + C    +F LK  + + +      +H+  +            TL+++
Sbjct: 729  KVFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINM 788

Query: 153  YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
            Y+K G I  A+ VFDEM  R+ ASW+ +++G  +  L  EAV LF +M   GV +PN   
Sbjct: 789  YSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGV-EPNGFM 847

Query: 213  VLGALAACGHLGAW-KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
            V   + AC   G    EG ++H ++ +  +  +V V  A++  Y   GL+  A ++F+ +
Sbjct: 848  VASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEM 907

Query: 272  KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD- 330
                ++V+W ++++ ++  G+    L ++++M + GV  +  ++     +C   GL++D 
Sbjct: 908  P-DHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQ 963

Query: 331  --GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
              G ++   +   G + ++    S++ +      ++EAC +   ++   D++ W  ++ A
Sbjct: 964  VLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNE-CDIISWNAMISA 1022

Query: 389  CQLYG 393
               +G
Sbjct: 1023 YAHHG 1027



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 165/371 (44%), Gaps = 8/371 (2%)

Query: 24   QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
            Q+  H+   G F+  +    S I  F + S + E  Y   +F  +N      +NA++   
Sbjct: 968  QVLGHIIQYG-FEDSVSVANSLISMFSSFSSVEEACY---VFDHMNECDIISWNAMISAY 1023

Query: 84   AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
            AH      ++  +  M    + +++ T S  L  C+ V  L     IH  V++ G  ++ 
Sbjct: 1024 AHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNV 1083

Query: 144  LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
             +  TLL +Y++ G    A+ VF  M  RD+ SWN+++A   Q     + + +   +   
Sbjct: 1084 CICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQM 1143

Query: 204  GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
            G    N VT   ALAAC +     E   +H  I        ++V NA++ MY K G++ +
Sbjct: 1144 GKVM-NHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMME 1202

Query: 264  AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
            A +V   +  +   VTWN ++   A + +   A++ ++ +   G+  + ++ ++ L AC+
Sbjct: 1203 AKKVLQTMP-QPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 1261

Query: 324  HA-GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
                L+  G+ +   +   G + +     S++ +  + G L  +  I   +   +  + W
Sbjct: 1262 APDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSP-ITW 1320

Query: 383  QTLLGACQLYG 393
              ++ A   +G
Sbjct: 1321 NAMVAANAHHG 1331



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 2/180 (1%)

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           L  L  C    A K+G  IH ++       ++ +   +I  Y K G +  A  VFD +  
Sbjct: 34  LKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMP- 92

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
            +S+V+W  MV  ++ +G   +A  LF  M   GVK +  +Y +AL AC     +D G++
Sbjct: 93  ERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQ 152

Query: 334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +   +       N+    ++VD   + G++++A  +  ++ M  D+V W  ++G   + G
Sbjct: 153 VQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTM-MERDVVSWNAMIGGYAVQG 211


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 196/520 (37%), Positives = 299/520 (57%), Gaps = 3/520 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F  +++ +   FN+++ G     +   +    R M+R   + D ++    L  CA    
Sbjct: 170 VFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKE 229

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           +    Q+H+  L+     +  +G+ L+D+Y K      A +VF+ +  ++I SW A++  
Sbjct: 230 VVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTA 289

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q  L  +A+ LF  M+MEGV +PNE T   AL +C  L   K G+ +     +     
Sbjct: 290 YTQNELFEDALQLFLDMEMEGV-RPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWG 348

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            + VCNA+++MY+K G ++ A  VF ++ CR  +V+WN++++ +A HG    A+E F  M
Sbjct: 349 LLPVCNALMNMYSKSGSVEDARRVFLSMPCR-DVVSWNSIIIGYAHHGRAREAMEAFHDM 407

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFN-SMANCGVKPNMKHYGSVVDLLGRAGR 362
             A   P  V+++  L AC   GLVD+G    N  M   GVKP  +HY  +V LL R GR
Sbjct: 408 LFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGR 467

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L EA   ++S  +GTD+V W++LL +CQ+Y +  +    + ++ ++   + G +VLLSN+
Sbjct: 468 LDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNM 527

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YA   RWD V +VR+ M+   V+K PG S+I+VG  +H F + DK H    +I +KL E+
Sbjct: 528 YAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQEL 587

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
           + KIK  GY    +  LHD+ +E+KE  L YHSEKLA+AFGLI T +  +I++ KN+RIC
Sbjct: 588 IDKIKVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRIC 647

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH  IKLIS    R I+VRD VRFH  +DG CSC DYW
Sbjct: 648 DDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 687



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 159/334 (47%), Gaps = 22/334 (6%)

Query: 63  ALFRQI--NAPSTNDF--NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118
            L RQ+    PS N    N ++ G A S +  +A+   R    G    +    S A+ A 
Sbjct: 67  GLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALALLRVADFGL---NEYVLSSAVAAT 123

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           A V +     Q H + ++ G      + + +L +Y +   +  A KVFD +   ++ ++N
Sbjct: 124 AHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFN 183

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ++I G         +  + + M +  V + + V+ +  L  C        G ++H    +
Sbjct: 184 SMINGFLDRGQMDGSTSIVRSM-VRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALK 242

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            RL++NV V +A++DMY KC    +A  VF+ +   K++V+W  ++ A+  +     AL+
Sbjct: 243 RRLELNVYVGSALVDMYGKCDFPHEANRVFEVLP-EKNIVSWTAIMTAYTQNELFEDALQ 301

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG------S 352
           LF  M   GV+P++ +Y  AL +C     + +G    N++  C +K    H+G      +
Sbjct: 302 LFLDMEMEGVRPNEFTYAVALNSCAGLATLKNG----NALGACTMKTG--HWGLLPVCNA 355

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           ++++  ++G +++A  +  S+    D+V W +++
Sbjct: 356 LMNMYSKSGSVEDARRVFLSMPC-RDVVSWNSII 388



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 139/303 (45%), Gaps = 18/303 (5%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +H+ V+R     D +    L+ +Y K G +  A++VFD M  R+  S N L++G A    
Sbjct: 38  VHARVVRAARF-DVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGR 96

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             +A+ L +       F  NE  +  A+AA  H+ ++  G + H Y  +  L  +  VC+
Sbjct: 97  HRDALALLRVAD----FGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCS 152

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           AV+ MY +C  +D+A +VFDN+    ++  +N+M+  F   G    +  +   M R   +
Sbjct: 153 AVLHMYCQCAHMDEAVKVFDNVS-SFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQ 211

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
            D VSY+A L  C     V  G ++        ++ N+    ++VD+ G+     EA + 
Sbjct: 212 WDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEA-NR 270

Query: 370 VKSVSMGTDMVLWQTLL----------GACQLYGDVEMAEIASRKLV-EMGSNNCGDFVL 418
           V  V    ++V W  ++           A QL+ D+EM  +   +    +  N+C     
Sbjct: 271 VFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLAT 330

Query: 419 LSN 421
           L N
Sbjct: 331 LKN 333


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 196/497 (39%), Positives = 309/497 (62%), Gaps = 13/497 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F +I       +NA++ G A +     A+  ++ M++ + R D  T    + ACA+
Sbjct: 176 AQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 235

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             ++    Q+HS +  HGF ++  +   L+D+Y+K GE+ +A  +F+ +  +D+ SWN L
Sbjct: 236 SGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTL 295

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G    NL  EA+ LF+ M   G   PN+VT+L  L AC HLGA   G  IH YI ++R
Sbjct: 296 IGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSILPACAHLGAIDIGRWIHVYI-DKR 353

Query: 241 LDMNVVVCNA------VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           L     V NA      +IDMYAKCG ++ A +VF++I   KSL +WN M+  FA+HG   
Sbjct: 354 LKG---VANASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRAD 409

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSV 353
            + ++F +M + G++PDD++++  L AC+H+G++D G  +F SM  +  + P ++HYG +
Sbjct: 410 ASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCM 469

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           +DLLG +G  +EA +++ ++ M  D V+W +LL AC+++G+VE+ E  ++ L+++   N 
Sbjct: 470 IDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENP 529

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
           G +VLLSN+YA   RW++V   R  + ++ +KKVPG S IE+  V+H+F   DK H + R
Sbjct: 530 GSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNR 589

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           EIY  L+E+   ++E G+   TS VL ++ EE KE AL +HSEKLA+AFGLIST   T +
Sbjct: 590 EIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKL 649

Query: 534 QVFKNLRICRDCHDVIK 550
            + KNLR+CR+CH+  K
Sbjct: 650 TIVKNLRVCRNCHEAYK 666



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 215/417 (51%), Gaps = 40/417 (9%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNAVL 80
           ++ + A +  TG   +      SK+IEF  LSP  + L YA ++F  I  P+   +N + 
Sbjct: 6   LRMIHAQMIKTGLHNTNY--ALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMF 63

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           RG A SS P +A+  Y  M+      ++ T  F LK+CA+  A  E  QIH HVL+ G  
Sbjct: 64  RGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCD 123

Query: 141 ADALLGTTLLDV-------------------------------YAKVGEIVSAKKVFDEM 169
            D  + T+L+ +                               YA  G I +A+K+FDE+
Sbjct: 124 LDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEI 183

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
            V+D+ SWNA+I+G A+     EA++LFK M M+   +P+E T++  ++AC   G+ + G
Sbjct: 184 PVKDVVSWNAMISGYAETGNYKEALELFKDM-MKTNVRPDESTMVTVVSACAQSGSIELG 242

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
            ++H +I +     N+ + NA+ID+Y+KCG L+ A  +F+ +   K +++WNT++  +  
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLP-YKDVISWNTLIGGYTH 301

Query: 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG--VRLFNSMANCGVKPNM 347
                 AL LF++M R+G  P+DV+ L+ L AC H G +D G  + ++      GV    
Sbjct: 302 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANAS 361

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASR 403
               S++D+  + G ++ A  +  S+ +   +  W  ++    ++G  + + +I SR
Sbjct: 362 SLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFDIFSR 417



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 139/271 (51%), Gaps = 10/271 (3%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           + + +I+ Y  S   EL  A  LF  +       +N ++ G  H +    A+L +++MLR
Sbjct: 260 IVNALIDLY--SKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 317

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRH--GFLADALLGTTLLDVYAKVGEI 159
                + +T    L ACA + A+     IH ++ +   G    + L T+L+D+YAK G+I
Sbjct: 318 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDI 377

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
            +A +VF+ +  + ++SWNA+I G A    A  + D+F RM+  G+ +P+++T +G L+A
Sbjct: 378 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGI-EPDDITFVGLLSA 436

Query: 220 CGHLGAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           C H G    G  I   + ++ ++   +     +ID+    GL  +A E+ + ++     V
Sbjct: 437 CSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGV 496

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
            W +++ A  +HG+    +EL E   +  +K
Sbjct: 497 IWCSLLKACKMHGN----VELGESFAQNLIK 523


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 191/526 (36%), Positives = 311/526 (59%), Gaps = 38/526 (7%)

Query: 92  AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD 151
            +L +R+M     R+++LT S  L ACA  + L    ++H  +LR+    +  + + L++
Sbjct: 162 GILLFREMGLNGIRANSLTVSSILPACADYIKLGR--EVHGFILRNEMEGNVYVSSALVN 219

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV------ 205
           +YA    +  A+ VFD M  RDI SWN ++            + LF +M+ EG+      
Sbjct: 220 MYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQAS 279

Query: 206 ----------------------------FKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
                                        KPN +T++ AL  C +L + + G +IH Y+ 
Sbjct: 280 WNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVF 339

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
                 +V +  A++ +YAKCG L+ +  VF+ +  RK +V WNTM+MA ++HG G  +L
Sbjct: 340 RHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMP-RKDVVAWNTMIMANSMHGKGGESL 398

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDL 356
            LF +M  +GV+P+ V+++  L  C+H+ L D+G+ +FNSM++   + P+  HY  +VD+
Sbjct: 399 ILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDV 458

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L RAGRL+EA D ++ + +      W  LLGAC++Y +VE+  +A+ +L E+  +N G++
Sbjct: 459 LSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNY 518

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSN+    ++W +   +RK M+++ + K PG S+++V   ++ F T DKS+ +   IY
Sbjct: 519 VLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIY 578

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
             LDEI  K++  GY   T  VL ++ +E++E  LC HSE+LAVAFG++++S  T+++VF
Sbjct: 579 RFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSSGKTTVRVF 638

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLRIC DCH+ IKLI+K+   +IIVRD +RFH F+DG C+C D+W
Sbjct: 639 KNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 146/290 (50%), Gaps = 4/290 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  LF +I  P    +  ++ G      P  A+  Y  +L  + R D        K
Sbjct: 26  DLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAK 85

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA    L    +IH   ++ GF  D +LG  L+D++ K   +  A+ VFD+M V+D+ S
Sbjct: 86  ACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVS 145

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W ++        +  + + LF+ M + G+ + N +TV   L AC      K G ++H +I
Sbjct: 146 WTSMTYCYVNCGMCRQGILLFREMGLNGI-RANSLTVSSILPACADY--IKLGREVHGFI 202

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
               ++ NV V +A+++MYA    L +A  VFD++  R  +V+WN M+ A+ ++ +  R 
Sbjct: 203 LRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHR-DIVSWNVMLTAYFLNKEYERG 261

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN 346
           L LF QM + G+K +  S+ AA+  C   G  +  + +   M + G+KPN
Sbjct: 262 LGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPN 311



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 98/194 (50%), Gaps = 6/194 (3%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA + G   + +   A+    +M     + + +T   AL  C  + +L    +IH +V 
Sbjct: 280 WNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVF 339

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           RH F+ D  + T L+ +YAK G++  ++ VF+ M  +D+ +WN +I   +      E++ 
Sbjct: 340 RHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLI 399

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER---LDMNVVVCNAVI 252
           LF +M   GV +PN VT +G L+ C H     EG  +   +  E     D +   C  ++
Sbjct: 400 LFNKMLDSGV-EPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSC--MV 456

Query: 253 DMYAKCGLLDKAFE 266
           D+ ++ G L++A++
Sbjct: 457 DVLSRAGRLEEAYD 470



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 120/240 (50%), Gaps = 5/240 (2%)

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
           G++  A  +FD++   D+ +W  LI+G  Q     +A+D++  +    V +P++  +L  
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNV-RPDKFVLLSV 83

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
             AC   G      KIH+   +   + ++V+ NA+IDM+ KC  ++ A  VFD++   K 
Sbjct: 84  AKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVV-KD 142

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFN 336
           +V+W +M   +   G   + + LF +MG  G++ + ++  + L AC  A  +  G  +  
Sbjct: 143 VVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPAC--ADYIKLGREVHG 200

Query: 337 SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
            +    ++ N+    ++V++   +  L++A  +  S+    D+V W  +L A  L  + E
Sbjct: 201 FILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSM-YHRDIVSWNVMLTAYFLNKEYE 259



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 240 RLDMNVVVCNAV--IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +L  N+  C ++  I      G L +A  +FD I     L TW  ++     HG   +A+
Sbjct: 4   KLPANLQPCQSIKLIKTCLNSGDLKRALYLFDKIP-EPDLRTWTILISGHTQHGFPKKAI 62

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           +++  +    V+PD    L+   AC  +G +    ++ +     G   ++    +++D+ 
Sbjct: 63  DIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMF 122

Query: 358 GR 359
           G+
Sbjct: 123 GK 124


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 184/429 (42%), Positives = 276/429 (64%), Gaps = 5/429 (1%)

Query: 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216
           GEI  A++VFD M  R+ ASW  +I    +     EA+DLF  M+ +GV +P   T++  
Sbjct: 279 GEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGV-RPTFPTLISI 337

Query: 217 LAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS 276
           L+ C  L +   G ++H  +   + D++V V + ++ MY KCG L K+  +FD     K 
Sbjct: 338 LSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPS-KD 396

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLF 335
           ++ WN+++  +A HG G  AL++F +M  +G  KP++V+++A L AC++AG+V++G++++
Sbjct: 397 IIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIY 456

Query: 336 NSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
            SM +  GVKP   HY  +VD+LGRAGR  EA +++ S+++  D  +W +LLGAC+ +  
Sbjct: 457 ESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQ 516

Query: 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454
           +++AE  ++KL+E+   N G ++LLSN+YA+  RW DV  +RK MK R V+K PG S+ E
Sbjct: 517 LDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTE 576

Query: 455 VGGVIHKFFTSD-KSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCY 513
           V   +H F      SH +   I + LDE+   ++E GY    S  LHD+ EEEK N+L Y
Sbjct: 577 VENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKY 636

Query: 514 HSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           HSE+LAVA+ L+  SE   I+V KNLR+C DCH  IK+ISKV  REII+RD  RFH F++
Sbjct: 637 HSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRN 696

Query: 574 GACSCKDYW 582
           G CSCKDYW
Sbjct: 697 GECSCKDYW 705



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 3/237 (1%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E+A A  +F  +   +   +  V++    +     A+  +  M +   R    T    L 
Sbjct: 280 EIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILS 339

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            CA + +L    Q+H+ ++R  F  D  + + L+ +Y K GE+V +K +FD    +DI  
Sbjct: 340 VCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIM 399

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN++I+G A   L  EA+ +F  M + G  KPNEVT +  L+AC + G  +EG KI+E +
Sbjct: 400 WNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESM 459

Query: 237 REERLDMNVVVCN--AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
            E    +  +  +   ++DM  + G  ++A E+ D++        W +++ A   H 
Sbjct: 460 -ESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHS 515



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 127/286 (44%), Gaps = 17/286 (5%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +  T+++    K G +  A+++FDEM  R + +W  ++ G  Q N   +A  +F  M 
Sbjct: 171 DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP 230

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
                +  EV+    L      G  ++ +++ E +  +     V+ CNA+I    + G +
Sbjct: 231 -----EKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVK----PVIACNAMISGLGQKGEI 281

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
            KA  VFD++K R    +W T++     +G    AL+LF  M + GV+P   + ++ L  
Sbjct: 282 AKARRVFDSMKERND-ASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSV 340

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C     +  G ++   +  C    ++     ++ +  + G L ++  I        D+++
Sbjct: 341 CASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFP-SKDIIM 399

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEM---GSNNCGDFVLLSNLYA 424
           W +++     +G   + E A +   EM   GS    +   ++ L A
Sbjct: 400 WNSIISGYASHG---LGEEALKVFCEMPLSGSTKPNEVTFVATLSA 442



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 19/238 (7%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L+  Y K GEI  A+KVFD M  R++ SW AL+ G         A  LF +M      + 
Sbjct: 85  LVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMP-----EK 139

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           N+V+    L      G   +  K++E I     D + +   ++I    K G +D+A E+F
Sbjct: 140 NKVSWTVMLIGFLQDGRIDDACKLYEMIP----DKDNIARTSMIHGLCKEGRVDEAREIF 195

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
           D +  R S++TW TMV  +  +     A ++F+ M     +  +VS+ + L      G +
Sbjct: 196 DEMSER-SVITWTTMVTGYGQNNRVDDARKIFDVMP----EKTEVSWTSMLMGYVQNGRI 250

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           +D   LF  M    VKP +    +++  LG+ G + +A  +  S+    D   WQT++
Sbjct: 251 EDAEELFEVMP---VKPVIA-CNAMISGLGQKGEIAKARRVFDSMKERND-ASWQTVI 303



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 19/246 (7%)

Query: 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
           +++G+I  A+K+FD    + I+SWN+++AG     +  +A  LF  M    +   N    
Sbjct: 28  SRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWN---- 83

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
            G ++     G   E  K+ + + E     NVV   A++  Y   G +D A  +F  +  
Sbjct: 84  -GLVSGYMKNGEIDEARKVFDLMPER----NVVSWTALVKGYVHNGKVDVAESLFWKMP- 137

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
            K+ V+W  M++ F   G    A +L+E +       D+++  + +      G VD+   
Sbjct: 138 EKNKVSWTVMLIGFLQDGRIDDACKLYEMIP----DKDNIARTSMIHGLCKEGRVDEARE 193

Query: 334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +F+ M+   V      + ++V   G+  R+ +A  I   +   T+ V W ++L      G
Sbjct: 194 IFDEMSERSVIT----WTTMVTGYGQNNRVDDARKIFDVMPEKTE-VSWTSMLMGYVQNG 248

Query: 394 DVEMAE 399
            +E AE
Sbjct: 249 RIEDAE 254


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 192/486 (39%), Positives = 290/486 (59%), Gaps = 8/486 (1%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158
           M R   + +  T S  L A   V       ++H+  ++  ++    +GT LLD Y K G 
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGV----SPFEMHAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           +  A KVF  +  +DI +W+A+I G AQ      AV +F +M  E + KPNE T  G + 
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKI-KPNEYTFSGIIN 115

Query: 219 ACGHLGAW-KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
           AC    A  ++G ++H +  + R +  + V +A++ MY+K G ++ AFEVF   + R  L
Sbjct: 116 ACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRER-DL 174

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
           V+WN+++  +A HG G +ALE+FE+M R  ++ D V+++  + AC H GL ++G R F+ 
Sbjct: 175 VSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDI 234

Query: 338 MA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVE 396
           M  +  ++P M+HY  +VDL GRAG L +A +I+  +       +W+TLL A  ++ ++E
Sbjct: 235 MVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLE 294

Query: 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVG 456
           + ++A+ KL+ +   N   +VLL+N+YA+   W +  +VRK M+ + VKKV G+S+IEV 
Sbjct: 295 VGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVK 354

Query: 457 GVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSE 516
              + F   D SH    +IY KL+E+  ++K  GY   TS V  D+ EE KE  L  HSE
Sbjct: 355 NKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHSE 414

Query: 517 KLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGAC 576
           +LA+AFGLI T   T +Q+ KNLR+C DCH VIKLIS +  R+I+VRD  RFH FK G C
Sbjct: 415 RLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGLC 474

Query: 577 SCKDYW 582
           SC DYW
Sbjct: 475 SCGDYW 480


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 194/527 (36%), Positives = 303/527 (57%), Gaps = 4/527 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALK 116
           L  A  LF ++    +  + A++ G     +P  A++ Y  M R  + R +  T S A+ 
Sbjct: 167 LEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVA 226

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           A A V  +    +IH H++R G  +D +L ++L+D+Y K G I  A+ +FD++  +D+ S
Sbjct: 227 AAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVS 286

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W ++I    + +   E   LF  + +    +PNE T  G L AC  L   + G ++H Y+
Sbjct: 287 WTSMIDRYFKSSRWREGFSLFSEL-VGSCERPNEYTFAGVLNACADLTTEELGKQVHGYM 345

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
                D      ++++DMY KCG ++ A  V D    +  LV+W +++   A +G    A
Sbjct: 346 TRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGCAQNGQPDEA 404

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVVD 355
           L+ F+ + ++G KPD V+++  L AC HAGLV+ G+  F S+     +     HY  +VD
Sbjct: 405 LKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVD 464

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LL R+GR ++   ++  + M     LW ++LG C  YG++++AE A+++L ++   N   
Sbjct: 465 LLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVT 524

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +V ++N+YAA  +W++ G++RK M+   V K PG S+ E+    H F  +D SH  + +I
Sbjct: 525 YVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQI 584

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
            E L E+  K+KE GY   TS VLHD+ +E+KE  L YHSEKLAVAF ++ST E T+I+V
Sbjct: 585 VEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKV 644

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           FKNLR C DCH  IK IS +  R+I VRD  RFH F++G CSC DYW
Sbjct: 645 FKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 166/359 (46%), Gaps = 35/359 (9%)

Query: 98  QMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157
           Q+L  + +  A T    ++ C++  AL E  ++H H+   GF+   ++   LL +YAK G
Sbjct: 75  QLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCG 134

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF----------- 206
            +V A+KVFDEM  RD+ SWN ++ G A+  L  EA  LF  M  +  +           
Sbjct: 135 SLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVK 194

Query: 207 --------------------KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
                               +PN  TV  A+AA   +   + G +IH +I    LD + V
Sbjct: 195 KDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEV 254

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           + ++++DMY KCG +D+A  +FD I   K +V+W +M+  +           LF ++  +
Sbjct: 255 LWSSLMDMYGKCGCIDEARNIFDKI-VEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGS 313

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
             +P++ ++   L AC      + G ++   M   G  P      S+VD+  + G ++ A
Sbjct: 314 CERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESA 373

Query: 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
             +V       D+V W +L+G C   G  + A      L++ G+    D V   N+ +A
Sbjct: 374 KHVVDGCPK-PDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTK--PDHVTFVNVLSA 429


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 200/564 (35%), Positives = 315/564 (55%), Gaps = 35/564 (6%)

Query: 52  LSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTC 111
           L+ +  L     L  Q        + +++   + +++   AV  ++ ML      D +T 
Sbjct: 183 LAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTV 242

Query: 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD---- 167
              L ACA++  L     +H  V   G      L   L+D+YAK G+   A++VFD    
Sbjct: 243 IAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGR 302

Query: 168 ----------------------------EMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
                                       EM VRDI ++N+++ G        EA+ LF  
Sbjct: 303 GPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMS 362

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M+   + + +  TV+  L AC  LGA ++G  +H  I +  ++ ++ +  A++DMY KCG
Sbjct: 363 MRRHDL-RVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCG 421

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            +D+A  VF  +  ++ + TW  M+   A +G G  ALE F QM   G +P+ VSY+A L
Sbjct: 422 RVDEATIVFQRMG-KRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVL 480

Query: 320 CACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
            AC+H+ L+++G   F+ M     + P ++HYG ++DLLGR+G L EA D+VK++ +  +
Sbjct: 481 TACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPN 540

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
            V+W ++L AC+++  +++A+ A+  L+++  +  G +V L N+Y    +W++  ++R  
Sbjct: 541 AVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRML 600

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           M+ R VKK  G+S I V G +HKF  SDKSH +  EI   L+EI  ++K  GY+  TS +
Sbjct: 601 MEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQI 660

Query: 499 LHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNR 558
             D+ EEEKE AL  HSEKLA+AFGLI+ +    + + KNLR+C DCH  IKLIS+++NR
Sbjct: 661 TVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNR 720

Query: 559 EIIVRDRVRFHRFKDGACSCKDYW 582
           EIIVRDR RFH F++G CSC D+W
Sbjct: 721 EIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 197/431 (45%), Gaps = 63/431 (14%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSK-----IIEFYALSPLNELAYAHALFRQINAPSTNDFNA 78
           +L A LTT+G     L P  ++     ++      PL+ L YA  LF ++  PST  F+ 
Sbjct: 17  ELHARLTTSGHLL--LHPPSARHLLNSLVNCLEPHPLH-LRYALHLFDRM-PPSTFLFDT 72

Query: 79  VLRGLAHS-SKPTNAVLWYRQMLRGSHRSDALTCSFALK---ACARVLALFETLQIHSHV 134
            LR  + + S P    L +R+M R   R D  T  F  K   + +R  +L     +H+  
Sbjct: 73  ALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAAC 132

Query: 135 LRHGFLADA-LLGTTLLDVYAKVGEIVSAKKVFDE------------------MG----- 170
           LR    + A  +  +L+ +Y ++G    A++ FDE                  MG     
Sbjct: 133 LRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDT 192

Query: 171 --------VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222
                   VRD+ SW +LIA  ++ N A EAV  FK M   G+  P+EVTV+  L+AC  
Sbjct: 193 QLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGI-APDEVTVIAVLSACAK 251

Query: 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
           L   + G  +H  + E+ +  +  +  A+IDMYAKCG    A +VFD +       +WN 
Sbjct: 252 LKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNA 311

Query: 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           ++  +  HG    A  LF++M    V+ D +++ + +    H+G + + + LF SM    
Sbjct: 312 IIDGYCKHGHVDVARSLFDEM---EVR-DIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367

Query: 343 VKPNMKHYGSVVDLLG--------RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           ++ +     +VV+LL         + GR   AC  ++   +  D+ L   LL      G 
Sbjct: 368 LRVD---NFTVVNLLTACASLGALQQGRALHAC--IEQRLVEADIYLGTALLDMYMKCGR 422

Query: 395 VEMAEIASRKL 405
           V+ A I  +++
Sbjct: 423 VDEATIVFQRM 433


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 188/523 (35%), Positives = 302/523 (57%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF  +       +  ++ G   +   + A+ ++R+M       D  T    L AC  
Sbjct: 225 ARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL +  QIH++++R  +  +  +G+ L+D+Y+K   I  A+  F  M  ++I SW AL
Sbjct: 285 LSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTAL 344

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G  Q   + EAV +F  M+ +G+  P++ T+   +++C +L + +EG + H       
Sbjct: 345 IVGYGQNGCSEEAVRVFSEMQRDGI-DPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 403

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L   + V NA++ +Y KCG ++ A  +FD +      V+W  +V  +A  G     ++LF
Sbjct: 404 LMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQ-VSWTALVTGYAQFGRAKETIDLF 462

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
           E+M    VKPD V+++  L AC+ AG V+ G   F+SM  + G+ P   HY  ++DL  R
Sbjct: 463 EKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSR 522

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           +GRL+EA + +K + M  D + W TLL AC+L GD+E+ + A+  L+E+   N   +VLL
Sbjct: 523 SGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLL 582

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
            +++A    W+ V ++R+ M++R VKK PG S+I+    +H F   D+SH   + IYEKL
Sbjct: 583 CSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKL 642

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           + +  K+ E GY    S VLHD+ + +K + + +HSEKLA+AFGL+       I++ KNL
Sbjct: 643 EWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNL 702

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH+  KLISK+  R+I+VRD VRFH+F +G CSC D+W
Sbjct: 703 RVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 186/382 (48%), Gaps = 50/382 (13%)

Query: 55  LNELAYAH------ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG--SHRS 106
           L+ LA+A       +LF  +    T  +NAV+ G +       AV  Y  +LR   S R 
Sbjct: 79  LSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRP 138

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF 166
             +T S  + A + +       Q H  +LR GF  +A +G+ L+ +YAK+G I  AK+VF
Sbjct: 139 SRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVF 198

Query: 167 DEM-------------GV------------------RDIASWNALIAGLAQGNLASEAVD 195
           DEM             G+                  RD  +W  ++ G  Q  L S+A++
Sbjct: 199 DEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALN 258

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
            F+RM+ +G+   ++ T    L ACG L A ++G +IH YI     D NV V +A++DMY
Sbjct: 259 FFRRMRFQGI-AIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMY 317

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
           +KC  +  A   F  + C K++++W  +++ +  +G    A+ +F +M R G+ PDD + 
Sbjct: 318 SKCRSIKPAETAFRRMSC-KNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTL 376

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV----VDLLGRAGRLQEACDIVK 371
            + + +C +   +++G + F+ +A   +   + HY +V    V L G+ G +++A  +  
Sbjct: 377 GSVISSCANLASLEEGAQ-FHCLA---LVSGLMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 372 SVSMGTDMVLWQTLLGACQLYG 393
            + +  D V W  L+     +G
Sbjct: 433 EM-LFHDQVSWTALVTGYAQFG 453



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 126/305 (41%), Gaps = 37/305 (12%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG-VFK 207
           LL   A    +     +F  M  RD  S+NA+IAG + G   + AV L+  +   G   +
Sbjct: 78  LLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVR 137

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           P+ +T+   + A   LG    G + H  I      +N  V + ++ MYAK GL+  A  V
Sbjct: 138 PSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRV 197

Query: 268 FDN----------------IKCR--------------KSLVTWNTMVMAFAVHGDGPRAL 297
           FD                 ++C+              +  +TW TMV  F  +G   +AL
Sbjct: 198 FDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQAL 257

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
             F +M   G+  D  ++ + L AC     ++ G ++   +       N+    ++VD+ 
Sbjct: 258 NFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMY 317

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN--NCGD 415
            +   ++ A    + +S   +++ W  L+     YG    +E A R   EM  +  +  D
Sbjct: 318 SKCRSIKPAETAFRRMSC-KNIISWTALIVG---YGQNGCSEEAVRVFSEMQRDGIDPDD 373

Query: 416 FVLLS 420
           F L S
Sbjct: 374 FTLGS 378


>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g13770, mitochondrial-like
           [Glycine max]
          Length = 600

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 325/587 (55%), Gaps = 18/587 (3%)

Query: 1   MANLNALLQKCSSNGAV---SHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE 57
           + + N +L +C S  A      +H   ++ H        ++L       I FY  +  + 
Sbjct: 26  LQDYNTVLNECVSKRAFKEGQRVHAHTIKTHYLPCVYLWTRL-------IVFY--TKCDS 76

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  +  ++   +   + A++   +     + A+    Q+LR    S+  T +     
Sbjct: 77  LGDARHVLNEMPERNVVSWTAMISAYSQRGYASQALSILVQILRSGTESNEFTFATMPYF 136

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
             R L       IHS +++  F A   +G++LLD+YAK G+I  A+ +F+ +  RD+ S 
Sbjct: 137 MYRFLGFCLREAIHSLIIKLNFKAHVYVGSSLLDMYAKDGKIHEARGIFECLPERDVVSC 196

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            A+I+G AQ +L  E ++LF R++ EG+   N VT    L A   L A   G ++H ++ 
Sbjct: 197 TAIISGYAQLDL-DEELELFLRLQREGM-XSNYVTYTSVLTALSGLAALDHGKQVHNHLL 254

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
              +   V++ N++IDMY+KCG L  A  +FD ++  +++++WN M++ ++ HG+    L
Sbjct: 255 CSEVPSFVILQNSLIDMYSKCGNLTYARRIFDTMR-ERTVISWNAMLVGYSKHGERREVL 313

Query: 298 ELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPNMKHYGSVV 354
           ELF  M     VKPD V+ LA L  C+H G  D G+ +F  M +    V+P+ K YG VV
Sbjct: 314 ELFNLMRDENKVKPDSVTVLAVLSGCSHGGQEDKGMDIFYDMTSGKISVQPDTKRYGCVV 373

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLLGRAGR++EA + +K +       +   LLGAC ++ ++ + E    +L+E    N G
Sbjct: 374 DLLGRAGRVEEAFEFIKKIPFEPSAAICGCLLGACSVHSNLGIGEFVGHRLLEFEPENAG 433

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
           ++V+LSNLYA+  RW+DV  +R  M  + V K PG S IEV  V+  F  SD SH +  E
Sbjct: 434 NYVILSNLYASAGRWEDVTSLRNLMLKKAVTKEPGRSLIEVDQVLQTFHPSDCSHPRREE 493

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           +  K  E++ + KE GY    SCVLHD+ EE+KE  L  HSEKLA++FGLI+T E+  I 
Sbjct: 494 VSAKXQELLVRFKEAGYFPDLSCVLHDVDEEQKEKILLSHSEKLALSFGLIATPESVLIC 553

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDY 581
           V KNLRIC DCH+  K ISK+Y+RE+ +RD+  FH      CSC DY
Sbjct: 554 VIKNLRICVDCHNFAKYISKIYSREVSLRDKNWFHGIVGEKCSCGDY 600


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/491 (40%), Positives = 290/491 (59%), Gaps = 34/491 (6%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF 166
           D +    AL ACA +L +     IHS  L+ G  +   L   L+ +Y+K G+I+ A+K+F
Sbjct: 240 DEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLF 299

Query: 167 DE-------------------------------MGVRDIASWNALIAGLAQGNLASEAVD 195
           DE                               M  +D+ SW+++I+G AQ +L  E + 
Sbjct: 300 DEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLA 359

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF+ M+M G FKP+E T++  ++AC  L A ++G  +H YI+   L +NV++   +IDMY
Sbjct: 360 LFQEMQMSG-FKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMY 418

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            KCG ++ A EVF  +   K + TWN +++  A++G    +L++F  M +  V P+++++
Sbjct: 419 MKCGCVETALEVFYGM-IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITF 477

Query: 316 LAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +  L AC H GLVD+G   F SM  +  ++PN+KHYG +VDLLGRAG+LQEA +++  + 
Sbjct: 478 MGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMP 537

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434
           M  D+  W  LLGAC+ +GD EM     RKL+E+  ++ G  VLLSN+YA+  +WDDV  
Sbjct: 538 MTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLE 597

Query: 435 VRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494
           +R  M    V K+PG S IE  GVIH+F   DK+H     I + L E+  K+K  GY   
Sbjct: 598 IRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPD 657

Query: 495 TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISK 554
            + VL D+ EEEKE+ L  HSEKLA+AFGLI+ S  T I++ KNLRIC DCH   KLISK
Sbjct: 658 INEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISK 717

Query: 555 VYNREIIVRDR 565
            + R+I+   R
Sbjct: 718 AFCRKIVFLFR 728



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 133/254 (52%), Gaps = 8/254 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A A+F  +       +++++ G A +      +  +++M     + D  T    + ACAR
Sbjct: 326 AKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACAR 385

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL +   +H+++ R+G   + +LGTTL+D+Y K G + +A +VF  M  + I++WNAL
Sbjct: 386 LAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNAL 445

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD-KIHEYIREE 239
           I GLA   L   ++D+F  MK   V  PNE+T +G L AC H+G   EG    +  I + 
Sbjct: 446 ILGLAMNGLVESSLDMFSNMKKCHV-TPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDH 504

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
           ++  NV     ++D+  + G L +A E+ + +     + TW  ++ A   HGD     E+
Sbjct: 505 KIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDS----EM 560

Query: 300 FEQMGRAGV--KPD 311
             ++GR  +  +PD
Sbjct: 561 GRRVGRKLIELQPD 574



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 181/445 (40%), Gaps = 94/445 (21%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS 103
           S++I+F    P   + Y   +F  I   +   +N ++R    ++ P  A   Y+ ML   
Sbjct: 14  SRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNY 73

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
             +D  T    ++AC+   + +E  Q+H+HVL+ GF +D  +  TL++ ++    +  A 
Sbjct: 74  LGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDAC 133

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL--------- 214
           +VF+E  V D  SWN+++AG  +     EA  ++ +M    +   N + VL         
Sbjct: 134 RVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVE 193

Query: 215 ----------------GALAACGH------------LGAWKEGDKIHEYIREERLD--MN 244
                            AL AC              +G  K G  + E +    L    N
Sbjct: 194 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 253

Query: 245 VVVCN----------------------AVIDMYAKCG----------------------- 259
           ++V N                      A+I MY+KCG                       
Sbjct: 254 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSM 313

Query: 260 --------LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
                   L+D A  +FD++   K +V+W++M+  +A +      L LF++M  +G KPD
Sbjct: 314 ISGYLKCNLVDNAKAIFDSMP-EKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPD 372

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
           + + ++ + AC     ++ G  +   +   G+  N+    +++D+  + G ++ A ++  
Sbjct: 373 ETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFY 432

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVE 396
            + +   +  W  L+    + G VE
Sbjct: 433 GM-IEKGISTWNALILGLAMNGLVE 456



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 120/280 (42%), Gaps = 17/280 (6%)

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
            +++F+ +   +   WN +I    Q N    A  L+K M +      +  T    + AC 
Sbjct: 31  TRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSM-LSNYLGADNYTYPLLIQACS 89

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
              +  E  ++H ++ +   D +V V N +I+ ++ C  +  A  VF+      S V+WN
Sbjct: 90  IRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDS-VSWN 148

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
           +++  +   G+   A  ++ QM    +   +    + +      GLV +  +LF+ M   
Sbjct: 149 SILAGYIEIGNVEEAKHIYHQMPERSIIASN----SMIVLFGMRGLVVEACKLFDEM--- 201

Query: 342 GVKPNMKHYGSVVDLLGRAGRLQEACDI---VKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            ++ +M  + +++    +    +EA      +  + +  D V+  + L AC     V M 
Sbjct: 202 -LEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 260

Query: 399 EIASRKLVEMGSNNCGDFVLLSN-LYAAYERWDDVGRVRK 437
           ++     +++G+ +   ++ L N L   Y +  D+   RK
Sbjct: 261 KLIHSLSLKIGTES---YINLQNALIYMYSKCGDIMVARK 297


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 203/580 (35%), Positives = 333/580 (57%), Gaps = 15/580 (2%)

Query: 7   LLQKCSSNGAVS---HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           LL+ C+  G ++    IH+      L+    F+S ++ V   +I+ Y  S    L  A  
Sbjct: 351 LLRTCTYAGEINLGEQIHL------LSIKTGFESDMY-VSGVLIDMY--SKYGWLDKARR 401

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +   + A     + +++ G         A+  ++ M       D +  + A+ ACA + A
Sbjct: 402 ILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKA 461

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           + +  QIHS V   G+ AD  +   L+++YA+ G    A  +F+ +  +D  +WN +++G
Sbjct: 462 MRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSG 521

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            AQ  L  EA+++F +M   GV K N  T + +++A  +L   K+G +IH  + +     
Sbjct: 522 FAQSGLYEEALEVFIKMYQAGV-KYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTS 580

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
              V NA+I +Y KCG ++ A   F  +  R   V+WNT++ + + HG G  AL+LF+QM
Sbjct: 581 ETEVANALISLYGKCGSIEDAKMQFFEMSERNH-VSWNTIITSCSQHGWGLEALDLFDQM 639

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGR 362
            + G+KP+DV+++  L AC+H GLV++G+  F SM++  G+ P   HY  VVD+LGRAG+
Sbjct: 640 KQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQ 699

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L  A   V+ + +  + ++W+TLL AC+++ ++E+ E+A++ L+E+  ++   +VLLSN 
Sbjct: 700 LDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNA 759

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YA   +W     VRK MK+R V+K PG S+IEV  V+H FF  D+ H    +IY+ L ++
Sbjct: 760 YAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADL 819

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
             ++ + GY  G   + H+  +E+K+     HSEKLAVAFGL+S   +  ++V KNLR+C
Sbjct: 820 DDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVC 879

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH  +K  S+V  REI++RD  RFH F +G CSC D+W
Sbjct: 880 NDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 184/344 (53%), Gaps = 7/344 (2%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +I+ YA   L  +  A  +F Q++A     + A+L G A +     AV  Y QM      
Sbjct: 83  LIDLYAKKGL--VQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVV 140

Query: 106 SDALTCSFALKACARVLALFETLQ-IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
                 S  L AC +  ALFE  + +H+ V + G  ++ ++G  L+ +Y + G +  A++
Sbjct: 141 PTPYVLSSVLSACTKA-ALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAER 199

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VF EM   D  ++N LI+  AQ      A+++F+ M++ G + P+ VT+   LAAC  +G
Sbjct: 200 VFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSG-WTPDCVTIASLLAACASIG 258

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
              +G ++H Y+ +  +  + ++  +++D+Y KCG++ +A E+F +   R ++V WN M+
Sbjct: 259 DLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGD-RTNVVLWNLML 317

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
           +A+    D  ++ +LF QM  AGV+P++ +Y   L  C +AG ++ G ++       G +
Sbjct: 318 VAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFE 377

Query: 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            +M   G ++D+  + G L +A  I++ V    D+V W +++  
Sbjct: 378 SDMYVSGVLIDMYSKYGWLDKARRILE-VLEAKDVVSWTSMIAG 420



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 146/267 (54%), Gaps = 8/267 (2%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           IH+  +  G   D + G  L+D+YAK G +  A++VF+++  RD  SW A+++G A+  L
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             EAV L+ +M   GV  P    +   L+AC     +++G  +H  + ++      VV N
Sbjct: 124 GEEAVGLYHQMHCSGVV-PTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182

Query: 250 AVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           A+I +Y + G L  A  VF  +  C +  VT+NT++   A  G+G  ALE+FE+M  +G 
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDR--VTFNTLISRHAQCGNGESALEIFEEMRLSGW 240

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
            PD V+  + L AC   G ++ G +L + +   G+ P+    GS++DL  + G + EA +
Sbjct: 241 TPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALE 300

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDV 395
           I KS    T++VLW  +L A   YG +
Sbjct: 301 IFKSGDR-TNVVLWNLMLVA---YGQI 323



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 172/355 (48%), Gaps = 3/355 (0%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
              L+ A  +F ++       FN ++   A      +A+  + +M       D +T +  
Sbjct: 191 FGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASL 250

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L ACA +  L +  Q+HS++L+ G   D ++  +LLD+Y K G IV A ++F      ++
Sbjct: 251 LAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNV 310

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
             WN ++    Q +  +++ DLF +M   GV +PNE T    L  C + G    G++IH 
Sbjct: 311 VLWNLMLVAYGQISDLAKSFDLFCQMVAAGV-RPNEFTYPCLLRTCTYAGEINLGEQIHL 369

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +   + ++ V   +IDMY+K G LDKA  + + ++  K +V+W +M+  +  H    
Sbjct: 370 LSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEA-KDVVSWTSMIAGYVQHEFCK 428

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            ALE F+ M   G+ PD++   +A+ AC     +  G ++ + +   G   ++  + ++V
Sbjct: 429 EALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALV 488

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           +L  R GR +EA  + +++    D + W  ++      G  E A     K+ + G
Sbjct: 489 NLYARCGRSKEAFSLFEAIEH-KDKITWNGMVSGFAQSGLYEEALEVFIKMYQAG 542


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/529 (36%), Positives = 308/529 (58%), Gaps = 5/529 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           + YAH LF +++ P+   + +++ G  +  +P +A+  Y +M       +  T +  + +
Sbjct: 57  IQYAHHLFDEMHEPNVVSWTSLMSGYVNMGRPQSALWLYTKMSESEVSPNGFTLATVINS 116

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           C+ +  L     +H+HV   G   + ++ ++L+D+Y K  ++  A+ VFD M  R++ SW
Sbjct: 117 CSILADLKTGKMVHAHVQILGLQGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSW 176

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
            A+IAG AQ     EA+++F+      + +PN   +   + AC  LG    G   H  + 
Sbjct: 177 TAMIAGYAQNGKGYEALEVFREFSSYMMERPNHFMLASVINACASLGRLVSGKVTHGAVI 236

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
               ++N VV +A++DMYAKCG    + +VF  I+   S++ + +M++  A +G G  +L
Sbjct: 237 RGGYELNDVVASALVDMYAKCGSFLYSEKVFRRIR-NPSVIPYTSMIVGAAKYGLGKLSL 295

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDL 356
            LFE+M    V P+DV+++  L AC+H+GLVD+G+RL NSM    GV P+++HY  VVD+
Sbjct: 296 NLFEEMTDRKVMPNDVTFVGILHACSHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVDM 355

Query: 357 LGRAGRLQEACDIVKSVSMGTD--MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           L R GRL EA  + KS+ +  +   +LW TLL + +L+G V+MA  AS+ L+E      G
Sbjct: 356 LSRVGRLDEAYKLAKSIRVNPNEGALLWGTLLSSSRLHGRVDMAVEASKWLIEYNQQVAG 415

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
            +V LSN Y     W++   +R  M+   V K PG S+IE+   I+ F+  D S  +  E
Sbjct: 416 AYVTLSNTYTLAGEWENAHSLRTEMELVGVHKEPGCSWIEIKDSIYVFYAGDLSCERGDE 475

Query: 475 IYEKLDEIMFKIKEYGYAAG-TSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           +   L E+  ++ E G   G T  V  D+ +E KE  +  HSE+LA+AFGLIS  +  +I
Sbjct: 476 VISLLRELERRMMERGCVGGSTGLVFVDVEQEVKEKIVGLHSERLALAFGLISIPKGVTI 535

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +V KNLRIC DCH+  KLISK+  R+ +VRD  RFH FKDG+C+CKD+W
Sbjct: 536 RVMKNLRICSDCHEAFKLISKIVERDFVVRDVNRFHHFKDGSCTCKDFW 584



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 141/291 (48%), Gaps = 7/291 (2%)

Query: 104 HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAK 163
           H++ A+     LK C   +    T   H+++ + G L D +    LL+ Y +   I  A 
Sbjct: 5   HQARAVHIIQQLKNCKDFIFAIST---HANLFKFGLLNDTITTNHLLNSYLRFRRIQYAH 61

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
            +FDEM   ++ SW +L++G         A+ L+ +M  E    PN  T+   + +C  L
Sbjct: 62  HLFDEMHEPNVVSWTSLMSGYVNMGRPQSALWLYTKMS-ESEVSPNGFTLATVINSCSIL 120

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
              K G  +H +++   L  N+VVC++++DMY KC  +D A  VFD++ CR ++V+W  M
Sbjct: 121 ADLKTGKMVHAHVQILGLQGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCR-NVVSWTAM 179

Query: 284 VMAFAVHGDGPRALELFEQMGRAGV-KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342
           +  +A +G G  ALE+F +     + +P+     + + AC   G +  G     ++   G
Sbjct: 180 IAGYAQNGKGYEALEVFREFSSYMMERPNHFMLASVINACASLGRLVSGKVTHGAVIRGG 239

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            + N     ++VD+  + G    +  + + +   + +     ++GA + YG
Sbjct: 240 YELNDVVASALVDMYAKCGSFLYSEKVFRRIRNPSVIPYTSMIVGAAK-YG 289


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 189/524 (36%), Positives = 309/524 (58%), Gaps = 6/524 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF+Q+   +   +  ++ GL  + +   A+  ++ MLR   +S +   +  + ACA 
Sbjct: 178 ALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACAN 237

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
             A    +Q+H  +++ GFL +  +  +L+  YA    I  ++KVFDE     +A W AL
Sbjct: 238 APAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTAL 297

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           ++G +      +A+ +F  M    +  PN+ T    L +C  LG    G ++H    +  
Sbjct: 298 LSGYSLNKKHEDALSIFSGMLRNSIL-PNQSTFASGLNSCSALGTLDWGKEMHGVAVKLG 356

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L+ +  V N+++ MY+  G ++ A  VF  I  +KS+V+WN++++  A HG G  A  +F
Sbjct: 357 LETDAFVGNSLVVMYSDSGNVNDAVSVFIKI-FKKSIVSWNSIIVGCAQHGRGKWAFVIF 415

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC--GVKPNMKHYGSVVDLLG 358
            QM R   +PD++++   L AC+H G ++ G +LF  M++    +   ++HY  +VD+LG
Sbjct: 416 GQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILG 475

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           R G+L+EA ++++ + +  + ++W  LL AC+++ DV+  E A+  +  + S +   +VL
Sbjct: 476 RCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVL 535

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YA+  RW +V ++R  MK   + K PG S++ + G  H+FF+ D+ H     IYEK
Sbjct: 536 LSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQPHCS--RIYEK 593

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+ +  K+KE GYA      LHD+ +E+KE  L YHSE+LA+AFGLI+T E +++ V KN
Sbjct: 594 LEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKN 653

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR+C DCH VIKLIS V  REI++RD +RFH FK+G CSC DYW
Sbjct: 654 LRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/408 (20%), Positives = 176/408 (43%), Gaps = 15/408 (3%)

Query: 18  SHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFN 77
           +H+  +++        Q  S    + +K+I  Y  S  N L  A  LF ++       +N
Sbjct: 44  NHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRS--NRLVDALNLFDEMPVRDVVSWN 101

Query: 78  AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137
           +++ G         AV  + +M   S     ++ +  +  C R   + +  ++   +   
Sbjct: 102 SMISGCVECGDMNTAVKLFDEMPERS----VVSWTAMVNGCFRSGKVDQAERLFYQMP-- 155

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
             + D     +++  Y + G++  A K+F +M  +++ SW  +I GL Q   + EA+DLF
Sbjct: 156 --VKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLF 213

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
           K M +    K         + AC +  A+  G ++H  I +        V  ++I  YA 
Sbjct: 214 KNM-LRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYAN 272

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
           C  +  + +VFD  K  + +  W  ++  ++++     AL +F  M R  + P+  ++ +
Sbjct: 273 CKRIGDSRKVFDE-KVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFAS 331

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            L +C+  G +D G  +       G++ +     S+V +   +G + +A  +   +    
Sbjct: 332 GLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI-FKK 390

Query: 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
            +V W +++  C  +G  + A +   +++ +  N   D +  + L +A
Sbjct: 391 SIVSWNSIIVGCAQHGRGKWAFVIFGQMIRL--NKEPDEITFTGLLSA 436


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/496 (38%), Positives = 299/496 (60%), Gaps = 9/496 (1%)

Query: 89  PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
           P  A L+ R    G   +D  T S  L A    L      QIH+ V++  +   +++GT 
Sbjct: 390 PLAAALFSRMREDGVAPND-FTYSTILTASVASLPP----QIHAQVIKTNYECTSIVGTA 444

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           LL  Y+K+     A  +F  +  +D+ SW+A++   AQ   +  A ++F +M M G+ KP
Sbjct: 445 LLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGL-KP 503

Query: 209 NEVTVLGALAACGHLGAWKE-GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           NE T+   + AC    A  + G + H    + R    + V +A++ MYA+ G ++ A  +
Sbjct: 504 NEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCI 563

Query: 268 FDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
           F+  +  + LV+WN+M+  +A HG   +AL++F QM   G++ D V++L+ +  C HAGL
Sbjct: 564 FER-QTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGL 622

Query: 328 VDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           V++G R F+SMA + G+ P M+HY  +VDL  RAG+L EA  +++ +S     ++W+TLL
Sbjct: 623 VEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLL 682

Query: 387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK 446
           GAC+++ +VE+ ++A+ KL+ +   +   +VLLSN+Y+A  +W +   VRK M  + VKK
Sbjct: 683 GACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKK 742

Query: 447 VPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEE 506
             G S+I++   +H F  SDKSH    +IY KL  +  K+K+ GY   TS  LH++ EE+
Sbjct: 743 EAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQ 802

Query: 507 KENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRV 566
           KE  L  HSE+LA+AFGLI+T     + +FKNLR+C DCH VIK++SK+ +REI++RD  
Sbjct: 803 KEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCS 862

Query: 567 RFHRFKDGACSCKDYW 582
           RFH F  G CSC D+W
Sbjct: 863 RFHHFNSGVCSCGDFW 878



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 150/300 (50%), Gaps = 11/300 (3%)

Query: 115 LKACARVLALFETLQIHSHVLRHGF-LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           LK C  V       Q+H   +R G    D  +GT+L+D+Y K   +V  +KVF+ M  R+
Sbjct: 110 LKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRN 169

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           + +W +L+ G  Q    S+ ++LF RM+ EGV+ PN VT    L+     G    G ++H
Sbjct: 170 VVTWTSLLTGYIQDGALSDVMELFFRMRAEGVW-PNSVTFASVLSVVASQGMVDLGRRVH 228

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
               +      V VCN++++MYAKCGL+++A  VF  ++ R  +V+WNT++    ++G  
Sbjct: 229 AQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETR-DMVSWNTLMAGLVLNGHD 287

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             AL+LF     +       +Y   +  C +   +    +L +S+    +K     YG+V
Sbjct: 288 LEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSV----LKRGFHSYGNV 343

Query: 354 ----VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
               +D   +AG+L  A DI   +S   ++V W  ++  C   GDV +A     ++ E G
Sbjct: 344 MTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDG 403



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 144/295 (48%), Gaps = 27/295 (9%)

Query: 110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
           T +  +K CA +  L    Q+HS VL+ GF +   + T L+D Y+K G++ +A  +F  M
Sbjct: 308 TYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLM 367

Query: 170 -GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
            G +++ SW A+I G  Q      A  LF RM+ +GV  PN+ T    L A         
Sbjct: 368 SGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGV-APNDFTYSTILTA----SVASL 422

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
             +IH  + +   +   +V  A++  Y+K    ++A  +F  I  +K +V+W+ M+  +A
Sbjct: 423 PPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMID-QKDVVSWSAMLTCYA 481

Query: 289 VHGDGPRALELFEQMGRAGVKPDD--VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN 346
             GD   A  +F +M   G+KP++  +S +   CA   AG VD G R F++++       
Sbjct: 482 QAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAG-VDLG-RQFHAIS------- 532

Query: 347 MKH--------YGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +KH          ++V +  R G ++ A  I +  +   D+V W ++L     +G
Sbjct: 533 IKHRCHDALCVSSALVSMYARKGSIESAQCIFERQT-DRDLVSWNSMLSGYAQHG 586



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 5/195 (2%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           ++H+  ++ G  +   +  +L+++YAK G +  A+ VF  M  RD+ SWN L+AGL    
Sbjct: 226 RVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNG 285

Query: 189 LASEAVDLF--KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
              EA+ LF   R  +  + +    TV+   A    LG  ++   +H  + +        
Sbjct: 286 HDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQ---LHSSVLKRGFHSYGN 342

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V  A++D Y+K G L  A ++F  +   +++V+W  M+     +GD P A  LF +M   
Sbjct: 343 VMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMRED 402

Query: 307 GVKPDDVSYLAALCA 321
           GV P+D +Y   L A
Sbjct: 403 GVAPNDFTYSTILTA 417


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 313/524 (59%), Gaps = 4/524 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACA 119
           A  LF ++       +N+++ GL+        +  + +M   S R  + +T    + ACA
Sbjct: 193 AQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACA 252

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            + AL E   +H  V++ G    A +  +L+++Y K+G + +A ++F+EM VR + SWN+
Sbjct: 253 XMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNS 312

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           ++        A + +DLF  MK  G+  P++ T++  L AC   G  ++ + IH YI   
Sbjct: 313 MVVIHNHNGYAEKGMDLFNLMKRAGI-NPDQATMVALLRACTDTGLGRQAESIHAYIHRC 371

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
             + ++++  A++++YAK G L+ + ++F+ IK R + + W  M+  +AVH  G  A++L
Sbjct: 372 GFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDT-IAWTAMLAGYAVHACGREAIKL 430

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLG 358
           F+ M + GV+ D V++   L AC+H+GLV++G + F  M+    V+P + HY  +VDLLG
Sbjct: 431 FDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLG 490

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           R+GRL++A +++KS+ M     +W  LLGAC++YG+VE+ +  + +L+ +  ++  ++++
Sbjct: 491 RSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIM 550

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+Y+A   W    +VR  MK R + + PG S+IE G  IH+F   D+ H +  EI+ K
Sbjct: 551 LSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTK 610

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+E++ KI E G A  T  VLHDI EE K + +  HSEKLA+AFGL+ T     + + KN
Sbjct: 611 LEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKN 670

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRIC DCH   K  S +  R II+RD  RFH F DG CSC+DYW
Sbjct: 671 LRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 177/357 (49%), Gaps = 7/357 (1%)

Query: 34  QFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAV 93
           Q   KL P  +      +L   + L +   L     APS           ++ S  T   
Sbjct: 66  QTLKKLKPSPAPKQPRVSLGIPSSLPFDVGLAFPTIAPSRFGTLTSFPNSSNDSTRTKVA 125

Query: 94  LWYRQMLRGSHRSDALTCS--FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD 151
           ++  ++   S  +D++  S  FA+ +C  V        IH+ V++    +D  +G  L+ 
Sbjct: 126 VFLGKLHNSSLLADSIVQSLVFAISSCTSV---SYCSAIHARVIKSLNYSDGFIGDRLVS 182

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
           +Y K+G    A+++FDEM  RD+ SWN+L++GL+        ++ F RM+ E   +PNEV
Sbjct: 183 MYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEV 242

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T+L  ++AC  +GA  EG  +H  + +  +     V N++I+MY K G LD A ++F+ +
Sbjct: 243 TLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEM 302

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
             R SLV+WN+MV+    +G   + ++LF  M RAG+ PD  + +A L AC   GL    
Sbjct: 303 PVR-SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 361

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
             +   +  CG   ++    ++++L  + GRL  + DI + +    D + W  +L  
Sbjct: 362 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRDTIAWTAMLAG 417



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 131/263 (49%), Gaps = 4/263 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +I  Y    L  L  A  LF ++   S   +N+++    H+      +  +  M R
Sbjct: 278 VVNSLINMYG--KLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKR 335

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D  T    L+AC       +   IH+++ R GF AD ++ T LL++YAK+G + +
Sbjct: 336 AGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNA 395

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           ++ +F+E+  RD  +W A++AG A      EA+ LF  M  EGV + + VT    L+AC 
Sbjct: 396 SEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGV-EVDHVTFTHLLSACS 454

Query: 222 HLGAWKEGDKIHEYIRE-ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
           H G  +EG K  E + E  R++  +   + ++D+  + G L+ A+E+  ++    S   W
Sbjct: 455 HSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVW 514

Query: 281 NTMVMAFAVHGDGPRALELFEQM 303
             ++ A  V+G+     E+ EQ+
Sbjct: 515 GALLGACRVYGNVELGKEVAEQL 537


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/520 (36%), Positives = 307/520 (59%), Gaps = 4/520 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF ++   +   + +V+ GL H+ +   A++ + +ML  S ++ + T + AL ACA +  
Sbjct: 196 LFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKML-ASFKATSSTLACALTACANICT 254

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
            F  +QIH  +++ G+  +  +  +L+  YA    I +A  +F++   R++  W AL+ G
Sbjct: 255 PFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTG 314

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
                  ++A+ +FK M    V  PN+ ++  AL +C  L A   G ++H    +  L+ 
Sbjct: 315 YGLNCRHTDALQVFKGMMRMSVL-PNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLES 373

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           ++ V N+++ MY KCG ++    VF  +  RK++V+WN++++  A HG G  AL LF QM
Sbjct: 374 DIFVSNSLVVMYTKCGHINDGIAVFTRMS-RKNVVSWNSIIVGCAQHGFGRWALTLFAQM 432

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGR 362
            R  V PD+++    L AC H+G++  G   F     N G++   +HY S+VDLLGR G+
Sbjct: 433 IRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQ 492

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L+EA  ++  +    + ++W  LL +   + +V +AE A++ ++++  N    + LLSNL
Sbjct: 493 LEEAEALIHIMPGKANYMVWLALLSSSINHSNVHVAERAAKCVLDLQPNCSAAYTLLSNL 552

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YA+  +W +V ++RK MK+  + K PG S+I + G+ H F + D+SH   R+IY+KL+ +
Sbjct: 553 YASTGKWTEVSKIRKKMKDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRKIYQKLEWL 612

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
             K+KE GY        HD+  E+KE  L YHSE+LA+ FGLIST E ++I V KNLRIC
Sbjct: 613 GGKLKELGYVPDPKFSFHDVETEQKEEMLSYHSERLAIGFGLISTVEGSTIIVMKNLRIC 672

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH+ +KL SKV  REI+VRD  RFH F +G CSC DYW
Sbjct: 673 GDCHNAVKLTSKVVGREIVVRDPSRFHHFHNGTCSCGDYW 712



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 108/242 (44%), Gaps = 12/242 (4%)

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           L T ++  YA  G +  A K+F EM V+D+ SWN+++ G  +    + A ++F +M    
Sbjct: 83  LYTMMIGGYADEGRLEDALKLFYEMPVKDLISWNSMLKGCLKCGDLTMACNMFDKMSERN 142

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
           V   +  T++  L   G +       ++ E +       +V   N+++  +   G ++ A
Sbjct: 143 VV--SWTTIINGLLEFGRV-------EVAECLFRVMPTKDVTAWNSMVHGFFSNGRVEDA 193

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
            E+F+ +  R ++++W +++     +G    AL +F +M  A  K    +   AL AC +
Sbjct: 194 IELFEKMPNR-NVISWTSVIGGLDHNGRSFEALVVFHKM-LASFKATSSTLACALTACAN 251

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
                 GV++   +   G   N     S++        +  A  I    ++  ++V+W  
Sbjct: 252 ICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFND-NVSRNVVVWTA 310

Query: 385 LL 386
           LL
Sbjct: 311 LL 312


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 187/523 (35%), Positives = 309/523 (59%), Gaps = 4/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F+ +++ +   +N ++ G A + +   A   + +ML        ++   AL ACA 
Sbjct: 297 ARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACAN 356

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L     +H  +       D  +  +L+ +Y+K   +  A  VF  +  + + +WNA+
Sbjct: 357 LGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAM 416

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G AQ    +EA++LF  M+   + KP+  T++  + A   L   ++   IH       
Sbjct: 417 ILGYAQNGCVNEALNLFCEMQSHDI-KPDSFTLVSVITALADLSVTRQAKWIHGLAIRTL 475

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           +D NV VC A+ID +AKCG +  A ++FD ++ R  ++TWN M+  +  +G G  AL+LF
Sbjct: 476 MDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERH-VITWNAMIDGYGTNGHGREALDLF 534

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
            +M    VKP+++++L+ + AC+H+GLV++G+  F SM  N G++P M HYG++VDLLGR
Sbjct: 535 NEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGR 594

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGRL +A   ++ + +   + +   +LGAC+++ +VE+ E  + +L ++  ++ G  VLL
Sbjct: 595 AGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLL 654

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           +N+YA+   WD V RVR AM+ + ++K PG S +E+   +H F++   +H + + IY  L
Sbjct: 655 ANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYL 714

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           + +  ++K  GY   T+ + HD+ E+ KE  L  HSE+LA+AFGL++T   T+I + KNL
Sbjct: 715 ETLGDEMKAAGYVPDTNSI-HDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNL 773

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH+  K IS V  REIIVRD  RFH FK+G CSC DYW
Sbjct: 774 RVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 194/402 (48%), Gaps = 39/402 (9%)

Query: 29  LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSK 88
           +  T  FQS LF + + ++  YA     ++  A+ +F ++       +N V+ G A +  
Sbjct: 167 MVITNGFQSNLFAM-TAVVNLYA--KCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGF 223

Query: 89  PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
              AV    QM     + D++T    L A A + AL     IH +  R GF     + T 
Sbjct: 224 ARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATA 283

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           +LD Y K G + SA+ VF  M  R++ SWN +I G AQ   + EA   F +M  EGV +P
Sbjct: 284 MLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGV-EP 342

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
             V+++GAL AC +LG  + G  +H  + E+++  +V V N++I MY+KC  +D A  VF
Sbjct: 343 TNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVF 402

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD------VSYLAALCAC 322
            N+K  K++VTWN M++ +A +G    AL LF +M    +KPD       ++ LA L   
Sbjct: 403 GNLK-HKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVT 461

Query: 323 NHA---------GLVDDGV----RLFNSMANCGVKPNMKH------------YGSVVDLL 357
             A          L+D  V     L ++ A CG     +             + +++D  
Sbjct: 462 RQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGY 521

Query: 358 GRAGRLQEACDIVKSVSMGT---DMVLWQTLLGACQLYGDVE 396
           G  G  +EA D+   +  G+   + + + +++ AC   G VE
Sbjct: 522 GTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVE 563



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 188/385 (48%), Gaps = 13/385 (3%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL+ C+S   +  +H  Q+   +   G +   LF  ++K+I  +     N +  A  +F 
Sbjct: 50  LLELCTS---LKELH--QILPLIIKNGFYNEHLF--QTKLISLFC--KFNSITEAARVFE 100

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
            +       ++ +L+G A +S   +AV +Y +M            ++ L+     L L  
Sbjct: 101 PVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRR 160

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             +IH  V+ +GF ++    T ++++YAK  +I  A K+F+ M  RD+ SWN ++AG AQ
Sbjct: 161 GREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQ 220

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
              A  AV +  +M+  G  KP+ +T++  L A   L A + G  IH Y      +  V 
Sbjct: 221 NGFARRAVQVVLQMQEAGQ-KPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVN 279

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V  A++D Y KCG +  A  VF  +  R ++V+WNTM+  +A +G+   A   F +M   
Sbjct: 280 VATAMLDTYFKCGSVRSARLVFKGMSSR-NVVSWNTMIDGYAQNGESEEAFATFLKMLDE 338

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           GV+P +VS + AL AC + G ++ G  +   +    +  ++    S++ +  +  R+  A
Sbjct: 339 GVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIA 398

Query: 367 CDIVKSVSMGTDMVLWQTL-LGACQ 390
             +  ++   T +V W  + LG  Q
Sbjct: 399 ASVFGNLKHKT-VVTWNAMILGYAQ 422


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 200/545 (36%), Positives = 317/545 (58%), Gaps = 11/545 (2%)

Query: 42  VRSKIIEFYALSPLNE-LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL-WYRQM 99
           V   +++ YA S   + L  A  +F ++   +   + A+L G        N V+  + +M
Sbjct: 292 VSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKM 351

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
           L    R + +T S  LKACA +       QIH+H ++       ++G  L+ +YA+ G I
Sbjct: 352 LNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSI 411

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
             A+  FD++  +++ S++  + G  + N   +    ++  +ME     +  T    ++A
Sbjct: 412 EEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQD----YQIERME--LGISTFTFGSLISA 465

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
              +G   +G ++H    +     +  + N+++ MY++CG L  A +VFD +    ++++
Sbjct: 466 AASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMN-DHNVIS 524

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           W +M+   A HG   RALELF  M  AGVKP+DV+Y+A L AC+HAGLV +G   F  M 
Sbjct: 525 WTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQ 584

Query: 340 -NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            + G+ P M+HY  +VDLLGR+G +++A D +  +    D ++W+TLLGAC+ + ++++ 
Sbjct: 585 KHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIG 644

Query: 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGV 458
           EIA+  ++++   +   +VLLSNLYA    WD V R+R  M+++++ K  G S++ V   
Sbjct: 645 EIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNT 704

Query: 459 IHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKL 518
           IH+F   D SH +  EIY KL+ ++ +IK  GY   TS VLHD+ +E KE  L  HSEK+
Sbjct: 705 IHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKI 764

Query: 519 AVAFGLISTSEAT-SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           AVAFGLIS + AT  I++FKNLR+C DCH  +K +SK   REII+RD  RFHR KDG CS
Sbjct: 765 AVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECS 824

Query: 578 CKDYW 582
           C +YW
Sbjct: 825 CGEYW 829



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 173/360 (48%), Gaps = 21/360 (5%)

Query: 20  IHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF--RQINAPSTNDF 76
           IH+ + LQ HL  TG        V + ++  Y  S  + +A A ++F    +       +
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLY--SKCSAVAAARSVFDGMPVGLRDLVSW 120

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC-ARVLALFETLQIHSHVL 135
            A+   L+ +     A+  + + L      +A T   A +AC A  L       +   V 
Sbjct: 121 TAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVF 180

Query: 136 RHGFLA-DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194
           + GF   D  +G  L+D++AK G++V+ ++VFD +  R +  W  LI   AQ   + EAV
Sbjct: 181 KLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAV 240

Query: 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254
           +LF  M +E  F+P++ T+   L+AC  LG+++ G ++H       L+ +  V   ++DM
Sbjct: 241 ELFLDM-LENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDM 299

Query: 255 YAKC---GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP-RALELFEQMGRAGVKP 310
           YAK      L  A EVF+ +  + +++ W  ++  +   G    + + LF +M   G++P
Sbjct: 300 YAKSHNGQSLHNAREVFNRMP-KHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRP 358

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV----VDLLGRAGRLQEA 366
           + ++Y + L AC + G  D G ++     +C VK N+     V    V +   +G ++EA
Sbjct: 359 NHITYSSMLKACANLGDQDSGRQIHT---HC-VKSNLADLNVVGNALVSMYAESGSIEEA 414


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 213/598 (35%), Positives = 333/598 (55%), Gaps = 40/598 (6%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVL 80
            IKQ+  H+   G  QS    + +K+I       +    YA  +   +   +   + AV+
Sbjct: 64  QIKQIHGHVLRKGLDQSCY--ILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVI 121

Query: 81  RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140
           RG A   K   A+  Y  M +      + T S  LKAC  +  L    Q H+   R    
Sbjct: 122 RGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGF 181

Query: 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA------------------ 182
               +G T++D+Y K   I  A+KVFDEM  RD+ SW  LIA                  
Sbjct: 182 CFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESL 241

Query: 183 -------------GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229
                        G AQ     EA++ F RM+  G+ + +EVTV G ++AC  LGA K  
Sbjct: 242 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI-RADEVTVAGYISACAQLGASKYA 300

Query: 230 DKIHEYIREERLDMN--VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
           D+  +  ++     +  VV+ +A+IDMY+KCG +++A  VF ++   K++ T+++M++  
Sbjct: 301 DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMN-NKNVFTYSSMILGL 359

Query: 288 AVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKP 345
           A HG    AL LF  M  +  +KP+ V+++ AL AC+H+GLVD G ++F+SM    GV+P
Sbjct: 360 ATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQP 419

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
              HY  +VDLLGR GRLQEA +++K++S+     +W  LLGAC+++ + E+AEIA+  L
Sbjct: 420 TRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHL 479

Query: 406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSY-IEVGGVIHKFFT 464
            E+  +  G+++LLSN+YA+   W  V RVRK +K + +KK P  S+ ++  G +HKFF 
Sbjct: 480 FELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFP 539

Query: 465 SDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGL 524
            + +H    +I +KL+E++ ++   GY    S V +D+ +  K   L  H+EKLA+AF L
Sbjct: 540 GNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSL 599

Query: 525 ISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++T+  ++I + KNLR+C DCH  ++L S+V  + II+RD +RFH F+ G CSC D+W
Sbjct: 600 LTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 198/570 (34%), Positives = 335/570 (58%), Gaps = 15/570 (2%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND--FNAV 79
           I+QL +   ++G F S +  V++ ++ +Y+ + +  L  A  +F  +     ++  +N++
Sbjct: 157 IRQLHSLAFSSG-FDSYV-SVKNSLLTYYSKNGI--LEEAEMVFNGMGEEVRDEVSWNSM 212

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           +       +   A+  YR M+      D  T +  L   + V  L   LQ H+  ++ GF
Sbjct: 213 IVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGF 272

Query: 140 LADALLGTTLLDVYAKVGEIVS-AKKVFDEMGVRDIASWNALIAGLAQGN-LASEAVDLF 197
             +  +G+ L+D+YAK G  +S ++KVF+E+   D+  WN +I+G +Q   L+ EA++ F
Sbjct: 273 NKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECF 332

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN-VVVCNAVIDMYA 256
           ++M+  G + P++ + + A++AC +L +  +G + H    +  +  N + V NA++ MY+
Sbjct: 333 RQMQRAG-YWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYS 391

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG L  A ++F  +  + + VT N+++  +A HG G  +L LFEQM  A + P  ++ +
Sbjct: 392 KCGNLQDARKLFQRMP-QHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLV 450

Query: 317 AALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           + L AC H G V++G + FN M +  G++P  +HY  ++DLLGRAG+L EA  ++ ++  
Sbjct: 451 SILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPF 510

Query: 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435
                 W  LLGAC+ YG++E+AE A+ + +++   N   +++L+++Y+A  +W++  R+
Sbjct: 511 SPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARI 570

Query: 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGT 495
           RK M++R ++K PG S+IE+   +H F   D SH + +EI+  LDE+  K+K  GY    
Sbjct: 571 RKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDV 630

Query: 496 SCVL---HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLI 552
                   + GE+EKE  L +HSEKLAVAFGL+ T     + V KNLRIC DCH+ IK +
Sbjct: 631 RWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFM 690

Query: 553 SKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           S +  R+I VRD  RFH F+DG CSC DYW
Sbjct: 691 SAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 160/336 (47%), Gaps = 11/336 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH LF QI  P    FN ++   A      +A+  + +M       D  T S  + AC  
Sbjct: 93  AHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCN 152

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG--VRDIASWN 178
            + L    Q+HS     GF +   +  +LL  Y+K G +  A+ VF+ MG  VRD  SWN
Sbjct: 153 HVGLIR--QLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWN 210

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ++I    Q     +A+ L++ M   G F+ +  T+   L     +     G + H    +
Sbjct: 211 SMIVAYGQHKRGLKALALYRDMVHRG-FEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIK 269

Query: 239 ERLDMNVVVCNAVIDMYAKCGL-LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD-GPRA 296
              + N  V + +IDMYAKCG  + ++ +VF+ I C   LV WNTM+  ++ + +    A
Sbjct: 270 TGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEI-CGSDLVVWNTMISGYSQNKELSVEA 328

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN--MKHYGSVV 354
           LE F QM RAG  PDD S++ A+ AC++      G + F+++A     P+  +    ++V
Sbjct: 329 LECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQG-KQFHALAMKSEIPSNQISVNNALV 387

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
            +  + G LQ+A  + + +     + L   + G  Q
Sbjct: 388 TMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQ 423



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L+  YAK   I  A  +FD++   D+ S+N LI   A       A+ LF  M+  G+   
Sbjct: 80  LIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVM- 138

Query: 209 NEVTVLGALAA-CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267
           +  T  G + A C H+G  ++   +H        D  V V N+++  Y+K G+L++A  V
Sbjct: 139 DGFTFSGVITACCNHVGLIRQ---LHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMV 195

Query: 268 FDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           F+ +    +  V+WN+M++A+  H  G +AL L+  M   G + D  +  + L   +   
Sbjct: 196 FNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVE 255

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGS-VVDLLGRAGR-LQEACDIVKSVSMGTDMVLWQT 384
            +  G++        G   N +H GS ++D+  + G  + E+  + + +  G+D+V+W T
Sbjct: 256 DLSGGLQFHAKAIKTGFNKN-RHVGSGLIDMYAKCGAGMSESRKVFEEIC-GSDLVVWNT 313

Query: 385 LL 386
           ++
Sbjct: 314 MI 315



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 8/150 (5%)

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + NV   NA+I  YAK  L+  A  +FD I  +  LV++NT++ A+A  GD   AL LF 
Sbjct: 71  EPNVFSFNALIAAYAKESLIHVAHHLFDQIP-QPDLVSFNTLINAYADRGDTLSALSLFG 129

Query: 302 QMGRAGVKPDDVSYLAALCA-CNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
           +M   G+  D  ++   + A CNH GL    +R  +S+A + G    +    S++    +
Sbjct: 130 EMREMGLVMDGFTFSGVITACCNHVGL----IRQLHSLAFSSGFDSYVSVKNSLLTYYSK 185

Query: 360 AGRLQEACDIVKSVSMGT-DMVLWQTLLGA 388
            G L+EA  +   +     D V W +++ A
Sbjct: 186 NGILEEAEMVFNGMGEEVRDEVSWNSMIVA 215


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/460 (39%), Positives = 287/460 (62%), Gaps = 6/460 (1%)

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE--IVSAKKVFDEMGVRDIASWNALIAG 183
           + L+I   +  +G   D     +L+   A      ++  +K+F  +  +++ SWN +I  
Sbjct: 203 DALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRV 262

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             + +L ++AVDL+ +M+   V +P+ +T    L ACG L A   G +IHEY+ +++L  
Sbjct: 263 YMKNSLPTQAVDLYLQMEKCRV-EPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCP 321

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N+++ N++IDMYA+CG LD A  VFD +K R  + +W +++ A+ + G G  A+ LF +M
Sbjct: 322 NLLLENSLIDMYARCGCLDDAKRVFDRMKFR-DVASWTSLISAYGMTGQGCNAVALFTEM 380

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGR 362
             +G  PD ++++A L AC+H+GL+D+G   F  M +   + P ++HY  +VDLLGRAGR
Sbjct: 381 LNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGR 440

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           + EA +I+K + +  +  +W TLL +C+++ ++++  +A+  L+++     G +VLLSN+
Sbjct: 441 VDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNI 500

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YA   RW +V  +R  MK + ++K PG S +E+   +H F   D SH + +EIYE+L  +
Sbjct: 501 YAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVL 560

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
           + K+KE GY   T   LHD+ EE+KE  L  HSEKLA+ F L++T E   I++ KNLR+C
Sbjct: 561 VAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-YQIRITKNLRVC 619

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH   KLISK+  REIIVRD  RFH FKDG CSC DYW
Sbjct: 620 GDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 161/337 (47%), Gaps = 36/337 (10%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           E      +F +++  +   +N ++R   ++ +  + +L +R+M+ G  R D  T    LK
Sbjct: 68  EPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLK 127

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           AC+    L   L IH  VL+ G   +  +G  L+ +Y K G +  A++VFDEM  +D+ S
Sbjct: 128 ACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVS 187

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN+++AG A      +A+++ + M+  G  KP+  T+   + A  +  +           
Sbjct: 188 WNSMVAGYAHNMRFDDALEICREMEDYGQ-KPDGCTMASLMPAVANTSS----------- 235

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
                  NV        +Y +        ++F N++ RK+L++WN M+  +  +    +A
Sbjct: 236 ------ENV--------LYVE--------KIFVNLE-RKNLISWNVMIRVYMKNSLPTQA 272

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           ++L+ QM +  V+PD +++ + L AC     +  G R+   +    + PN+    S++D+
Sbjct: 273 VDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDM 332

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
             R G L +A  +   +    D+  W +L+ A  + G
Sbjct: 333 YARCGCLDDAKRVFDRMKF-RDVASWTSLISAYGMTG 368



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 2/226 (0%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           Y   +F  +   +   +N ++R    +S PT AV  Y QM +     DA+T +  L AC 
Sbjct: 240 YVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACG 299

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            + AL    +IH +V +     + LL  +L+D+YA+ G +  AK+VFD M  RD+ASW +
Sbjct: 300 DLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTS 359

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           LI+          AV LF  M   G   P+ +  +  L+AC H G   EG    + + ++
Sbjct: 360 LISAYGMTGQGCNAVALFTEMLNSGQ-APDSIAFVAILSACSHSGLLDEGRIYFKQMTDD 418

Query: 240 -RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
            R+   +     ++D+  + G +D+A+ +   +    +   W T++
Sbjct: 419 YRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLL 464



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 151/324 (46%), Gaps = 16/324 (4%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           ++H+ +       +  LG  L+  YA  GE    +KVFDEM  R++  +N +I      +
Sbjct: 39  KLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNH 98

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
              + + +F+ M + G F+P+  T    L AC      + G  IH  + +  LD N+ V 
Sbjct: 99  RYDDGLLVFREM-VNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVG 157

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N +I MY KCG L +A  VFD +   K +V+WN+MV  +A +     ALE+  +M   G 
Sbjct: 158 NGLIAMYGKCGCLFEARRVFDEM-IWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQ 216

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           KPD  +  + + A   A    + V     +     + N+  +  ++ +  +     +A D
Sbjct: 217 KPDGCTMASLMPAV--ANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVD 274

Query: 369 I---VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN--CGDFVLLSNLY 423
           +   ++   +  D + + ++L AC   GD+  A +  R++ E       C + +L ++L 
Sbjct: 275 LYLQMEKCRVEPDAITFASVLPAC---GDLS-ALLLGRRIHEYVEKKKLCPNLLLENSLI 330

Query: 424 AAYER---WDDVGRVRKAMKNRDV 444
             Y R    DD  RV   MK RDV
Sbjct: 331 DMYARCGCLDDAKRVFDRMKFRDV 354


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/525 (36%), Positives = 303/525 (57%), Gaps = 8/525 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++       + A++ G   +  P  AV  Y  M       D +T +  L ACA 
Sbjct: 350 AEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAG 409

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L + + +H    R G  +  ++  +L+D+Y+K   I  A +VF  +  +++ SW ++
Sbjct: 410 LGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSI 469

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I GL     + EA+  F++M +    KPN VT++  L+AC  +GA   G +IH +     
Sbjct: 470 ILGLRLNYRSFEALFFFQQMILS--LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L  +  + NA++DMY +CG ++ A+  F++  C K + +WN ++  +A  G G  A+ELF
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNS--CEKDVASWNILLTGYAQQGKGGLAVELF 585

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGR 359
            +M  + V PD++++ + LCAC+ +G+V DG+  F SM +   + PN+KHY SVVDLLGR
Sbjct: 586 HKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGR 645

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGRL++A + +K + +  D  +W  LL AC++Y +VE+ E+A++ + EM + + G ++LL
Sbjct: 646 AGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILL 705

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
            NLYA   +WD+V RVRK M+   +   PG S++EV G +H F T D  H + +EI   L
Sbjct: 706 CNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVL 765

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +    K++  G +        DI +  K    C HSE+LA+AFGLI+T   T I V KNL
Sbjct: 766 EGFYEKMEATGLSMSKDSRRDDI-DASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNL 824

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD--YW 582
            +C +CH+ +K ISKV  R I VRD  +FH FKDG CSC D  YW
Sbjct: 825 YMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 170/337 (50%), Gaps = 3/337 (0%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
             +L  A  +F ++       +N ++ G A +     A+  Y +ML    R D  T    
Sbjct: 142 FGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCV 201

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ C  +  L    ++H HV+R+GF +D  +   L+ +Y K G+I SA+ VFD M  RD 
Sbjct: 202 LRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDR 261

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWNA+I+G  + ++  E + LF  M+ E    P+ +T+   ++AC  LG  + G ++H 
Sbjct: 262 ISWNAMISGYFENDVCLEGLRLFFMMR-EFFVDPDLMTMTSVISACEALGDERLGREVHG 320

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           Y+ +      V V N++I M++  G  D+A  VF  ++  K LV+W  M+  +  +G   
Sbjct: 321 YVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF-KDLVSWTAMISGYEKNGLPE 379

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
           +A+E +  M   GV PD+++  + L AC   GL+D G+ L       G+   +    S++
Sbjct: 380 KAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLI 439

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           D+  +   + +A ++   +    +++ W +++   +L
Sbjct: 440 DMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLRL 475



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 3/284 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ C    A  E  ++HS+V +        LG  LL ++ + G++V A  VF +M  RD+
Sbjct: 101 LRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDL 160

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWN L+ G A+     EA++L+ RM   G+ +P+  T    L  CG L     G ++H 
Sbjct: 161 FSWNVLVGGYAKAGYFDEALNLYHRMLWVGI-RPDVYTFPCVLRTCGGLPDLARGREVHL 219

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           ++     + +V V NA+I MY KCG +  A  VFD +  R+  ++WN M+  +  +    
Sbjct: 220 HVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMP-RRDRISWNAMISGYFENDVCL 278

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
             L LF  M    V PD ++  + + AC   G    G  +   +   G    +    S++
Sbjct: 279 EGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLI 338

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +    G   EA ++V S     D+V W  ++   +  G  E A
Sbjct: 339 QMHSSVGCWDEA-EMVFSKMEFKDLVSWTAMISGYEKNGLPEKA 381



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 6/153 (3%)

Query: 178 NALIAGLA-QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           N+LI  L  +G+L    + L    +++      E T +  L  C    A  EG ++H Y+
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQ--VSVEEETYIALLRLCEWKRAASEGSRVHSYV 120

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +    + V + NA++ M+ + G L +A+ VF  +   + L +WN +V  +A  G    A
Sbjct: 121 SKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM-AERDLFSWNVLVGGYAKAGYFDEA 179

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
           L L+ +M   G++PD  ++   L  C   GL D
Sbjct: 180 LNLYHRMLWVGIRPDVYTFPCVLRTC--GGLPD 210


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 193/523 (36%), Positives = 295/523 (56%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF  +    +  +  ++ GL  +     AV  +++M       D  T    L AC  
Sbjct: 223 AEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGG 282

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
            LAL E  QIH++++R  +  +  +G+ LLD+Y K   +  A+ VF +M  +++ SW A+
Sbjct: 283 FLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAM 342

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           + G  Q   + EAV +F  M+   +  P++ T+   +++C +L + +EG + H       
Sbjct: 343 LVGYGQNGYSEEAVRIFCDMQRNEI-HPDDFTLGSVISSCANLASLEEGAQFHGQALASG 401

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L   V V NA+I +Y KCG L+ A ++F  +K R   V+W  +V  +A  G     + LF
Sbjct: 402 LICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDE-VSWTALVSGYAQFGKANETISLF 460

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGR 359
           E M   G+ PD V+++  L AC+ AGLV+ G   F  M     + P   HY  ++DLL R
Sbjct: 461 ETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSR 520

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGRL+EA + +  +    D + W TLL +C+L G++E+ + A+  L ++   N   ++LL
Sbjct: 521 AGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILL 580

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           S++YAA  +WDDV ++RK M+   VKK PG S+I+    +H F   D+S     +IY KL
Sbjct: 581 SSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKL 640

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           + +  K+ E GY    S VLHD+ + EK   L +HSEKLA+AFGL+   +   I+V KNL
Sbjct: 641 ESLYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNL 700

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH+  K IS++  REI+VRD VRFH FKDG CSC D+W
Sbjct: 701 RVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 174/377 (46%), Gaps = 38/377 (10%)

Query: 52  LSPLNELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSD 107
           LS  ++L Y   + R  ++   +D   +N++L G A +   + +V  Y  ML+ GS   +
Sbjct: 78  LSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLN 137

Query: 108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG---------- 157
            +T S  L   +    +    QIH  + + G+ +   +G+ L+D+YAK G          
Sbjct: 138 RITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFE 197

Query: 158 ---------------------EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
                                 IV A+++FD M  +D  SW  +I GL Q  L  EAVD 
Sbjct: 198 EIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDK 257

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           FK M +EG F  ++ T    L ACG   A  EG +IH YI       N+ V +A++DMY 
Sbjct: 258 FKEMGIEG-FCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYC 316

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KC  +  A  VF  ++  K++++W  M++ +  +G    A+ +F  M R  + PDD +  
Sbjct: 317 KCRNVKYAEAVFRKMR-HKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLG 375

Query: 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG 376
           + + +C +   +++G +        G+   +    +++ L G+ G L+ A  +   + + 
Sbjct: 376 SVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKI- 434

Query: 377 TDMVLWQTLLGACQLYG 393
            D V W  L+     +G
Sbjct: 435 RDEVSWTALVSGYAQFG 451



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 153/331 (46%), Gaps = 13/331 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ A++  T  +Q  +F V S +++ Y       + YA A+FR++   +   + A+L G
Sbjct: 290 KQIHAYIIRT-DYQDNIF-VGSALLDMYC--KCRNVKYAEAVFRKMRHKNVISWTAMLVG 345

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              +     AV  +  M R     D  T    + +CA + +L E  Q H   L  G +  
Sbjct: 346 YGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICF 405

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +   L+ +Y K G +  A ++F EM +RD  SW AL++G AQ   A+E + LF+ M  
Sbjct: 406 VTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLA 465

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHE-YIREERLDMNVVVCNAVIDMYAKCGLL 261
            G+  P+ VT +G L+AC   G  ++G    E  ++E R+         +ID+ ++ G L
Sbjct: 466 HGIV-PDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRL 524

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD---GPRALELFEQMGRAGVKPDDVSYLAA 318
           ++A    + +      + W T++ +  ++G+   G  A E   ++      P     L++
Sbjct: 525 EEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQ--NPASYILLSS 582

Query: 319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKH 349
           + A    G  DD  +L   M   GVK    H
Sbjct: 583 IYAAK--GKWDDVAKLRKGMREMGVKKEPGH 611



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 104/223 (46%), Gaps = 5/223 (2%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            TLL  Y+K+G +   ++VFD M   D+ SWN+L++G A   L SE+V ++  M  +G  
Sbjct: 75  NTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSV 134

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
             N +T    L    + G    G +IH  I +      + V + ++DMYAK G ++ A  
Sbjct: 135 NLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANR 194

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +F+ I   K++V +NTM+           A +LF+ M     + D +S+   +      G
Sbjct: 195 IFEEIP-EKNIVVYNTMITGLLRCRFIVEAEQLFDNMP----EKDSISWTTIITGLTQNG 249

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           L  + V  F  M   G   +   +GSV+   G    L E   I
Sbjct: 250 LFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQI 292


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 212/531 (39%), Positives = 312/531 (58%), Gaps = 13/531 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A A F  I A +   +NA+L     + +   A+  +  M R S   + ++    L  C  
Sbjct: 390 ARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCED 449

Query: 121 VLALFETLQIHSHVLRHGFLA-DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           V    E   IH+ V+ +G  A ++ +   ++ ++A+ G +  A   FD   V+D  SWN 
Sbjct: 450 V---SEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAMAAFDATVVKDSVSWNT 506

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
            +A L+       A+  F  M+ EG F+P++ T++  +  C  LG  + G  I + +   
Sbjct: 507 KVAALSAREDLHGAITAFYTMQHEG-FRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAA 565

Query: 240 -RLDMNVVVCNAVIDMYAKCGL-LDKAFEVFDNIKC-RKSLVTWNTMVMAFAVHGDGPRA 296
             ++ +VVV +AV++M AKCG  +D+   +F  +   RK LV WNTM+ A+A HG G +A
Sbjct: 566 IEVERDVVVESAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKA 625

Query: 297 LELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGVR-LFNSMANCGVKPN-MKHYGSV 353
           L+LF  M  R+ V+PD  ++++ L  C+HAGLV+DG+   F +    G++   ++HY  +
Sbjct: 626 LKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYACL 685

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VD+LGR G L+EA D ++ + +  D V+W +LLGAC  YGD+E  E A+R  +E+  ++ 
Sbjct: 686 VDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSDS 745

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK-VPGFSYIEVGGVIHKFFTSDKSHVKW 472
             +V+LSN+YAA  RW+D  RVR+ M  R VKK  PG S I V   +H+FF  D+SH + 
Sbjct: 746 VGYVVLSNIYAAAGRWEDSIRVREDMAERRVKKRAPGKSSIVVKNRVHEFFARDRSHPQS 805

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
            EIY +L+ +   I+E GY   T  VLHD+ EE+KE  L YHSEKLA+AFGLIS     S
Sbjct: 806 DEIYAELERLKGLIREAGYVPDTRLVLHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRHS 865

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF-KDGACSCKDYW 582
           I+V KNLR+C+DCH   K I++V  REI VRD  RFH F KDG CSC DYW
Sbjct: 866 IRVIKNLRVCKDCHTATKFIARVTQREIAVRDCNRFHHFGKDGECSCGDYW 916



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 154/337 (45%), Gaps = 11/337 (3%)

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           A+F  +   +   +NA++   A     + A   Y +M +   R + +T   ALKA     
Sbjct: 289 AVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSS 348

Query: 123 A--LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L E+  +H  +   G   D ++GT L+ +Y   G I  A+  FD +  ++I SWNA+
Sbjct: 349 SQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAM 408

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH-EYIREE 239
           +        A EA++LF  MK +    PN+V+ L  L  C  +    E   IH E +   
Sbjct: 409 LTAYGDNGRAREAMELFAAMKRQS-LAPNKVSYLAVLGCCEDV---SEARSIHAEVVGNG 464

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
                  + N V+ M+A+ G L++A   FD    + S V+WNT V A +   D   A+  
Sbjct: 465 LFAQESSIANGVVRMFARSGSLEEAMAAFDATVVKDS-VSWNTKVAALSAREDLHGAITA 523

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLG 358
           F  M   G +PD  + ++ +  C   G ++ G  +   + A   V+ ++    +V++++ 
Sbjct: 524 FYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVESAVMNMVA 583

Query: 359 RAGRLQEACD--IVKSVSMGTDMVLWQTLLGACQLYG 393
           + G   + C+    +      D+V W T++ A   +G
Sbjct: 584 KCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHG 620



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 185/406 (45%), Gaps = 27/406 (6%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
           +  L  LL++C  +  ++    +QL   +   G  ++ L    + +++ Y  S    L  
Sbjct: 24  IETLAGLLRRCIGDADLAQG--RQLHRQIVKQGLARNDLLG--NYLVQMY--SKCRSLDD 77

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML---RGSHRSDALTCSFALKA 117
           A+A F  + +     +N ++   A  S P      Y +M    R  +R + LT    L A
Sbjct: 78  ANAAFSALRSRGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGA 134

Query: 118 CAR------VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171
            A         +  +   +H  +       D  + T LLD Y K G + SA +VF  + V
Sbjct: 135 IASGDPSSSSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQV 194

Query: 172 RDIASWNALIAGLAQGN-LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            D+  WNA I   A  +     A+ L +RM +EG+  PN  + +  L++CG   +     
Sbjct: 195 PDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLL-PNRASFVAILSSCGDHSSLPLAR 253

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            IH  + E     +VVV  A++ MY +CG +D++  VF+ +  R   V+WN M+ AFA  
Sbjct: 254 SIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNH-VSWNAMIAAFAQC 312

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAAL-CACNHAGL-VDDGVRLFNSMANCGVKPNMK 348
           G    A  ++ +M + G +P+ ++++ AL  AC+ +   + +   L   +A  G++ ++ 
Sbjct: 313 GHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVM 372

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
              ++V + G  G +  A     ++    ++V W  +L A   YGD
Sbjct: 373 VGTALVTMYGSTGAIDRARAAFDAIP-AKNIVSWNAMLTA---YGD 414


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/528 (37%), Positives = 308/528 (58%), Gaps = 4/528 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L  A  +F ++       +NA++ GL         +  +R+M       D  T      
Sbjct: 40  DLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFS 99

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
             A + ++    QIH + +++G   D ++ ++L  +Y + G++   + V   M VR++ +
Sbjct: 100 GSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVA 159

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN LI G AQ       + L+K MK+ G  +PN++T +  L++C  L    +G +IH   
Sbjct: 160 WNTLIMGNAQNGCPETVLYLYKMMKISGC-RPNKITFVTVLSSCSDLAIRGQGQQIHAEA 218

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +      V V +++I MY+KCG L  A + F   +  +  V W++M+ A+  HG G  A
Sbjct: 219 IKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSE-REDEDEVMWSSMISAYGFHGQGDEA 277

Query: 297 LELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVV 354
           ++LF  M  +  ++ ++V++L  L AC+H+GL D G+ LF+ M    G KP +KHY  VV
Sbjct: 278 IKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVV 337

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLLGRAG L +A  I+KS+ +  D V+W+TLL AC ++ + EMA+   ++++E+  N+  
Sbjct: 338 DLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSA 397

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
            +VLL+N++A+ +RW DV  VRK+M++++VKK  G S+ E  G +H+F   D+S  K +E
Sbjct: 398 CYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKE 457

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY  L E+  ++K  GY   T+ VLHD+ EEEKE+ L  HSEKLAVAF L+   E   I+
Sbjct: 458 IYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIR 517

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + KNLR+C DCH   K IS + NREI +RD  RFH F +G CSC DYW
Sbjct: 518 IIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 137/276 (49%), Gaps = 3/276 (1%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           L++ Y + G++VSA+KVFDEM  R + +WNA+IAGL Q     E + LF+ M   G F P
Sbjct: 31  LINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLG-FSP 89

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           +E T+    +    L +   G +IH Y  +  L++++VV +++  MY + G L     V 
Sbjct: 90  DEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVI 149

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
            ++  R +LV WNT++M  A +G     L L++ M  +G +P+ ++++  L +C+   + 
Sbjct: 150 RSMPVR-NLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIR 208

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
             G ++       G    +    S++ +  + G L +A     S     D V+W +++ A
Sbjct: 209 GQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAF-SEREDEDEVMWSSMISA 267

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
              +G  + A      + E       +   L+ LYA
Sbjct: 268 YGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYA 303


>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
 gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
          Length = 438

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 185/437 (42%), Positives = 267/437 (61%), Gaps = 3/437 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            T+L  +AKVG +  A ++F       I  WNA+IA   Q   + +A+ LF  +    + 
Sbjct: 4   VTVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRI- 62

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           +PN VT++  L AC  L A ++G ++H   R+  +D  V V  A++DMY+KCG LD+A E
Sbjct: 63  EPNSVTLMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAVE 122

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
            F  I+ R   V+W  M+ AFA HG   RAL  F++M   G KP+ V+++  L AC+H G
Sbjct: 123 AFARIE-RHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHKG 181

Query: 327 LVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LV++G + F+ M A  G+ P+ +HY  +VDLLGRAG L EA D +  +       + ++L
Sbjct: 182 LVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPGAPHAAVLKSL 241

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           L AC+ Y DV+  E  +++++E   +    +V+L+++Y A  +W++  R+R  M  R V+
Sbjct: 242 LSACRSYKDVDRGERIAKRMLESFWDESMPYVVLASIYRAAGKWEEAARIRSLMVERGVR 301

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K PG S IEV G + +F   D SHV+   I  KL E+   +KE GY   TS VLHD+ EE
Sbjct: 302 KDPGRSAIEVEGRVFEFVAGDMSHVQMNPIRAKLQELSSAMKEAGYVPDTSLVLHDVAEE 361

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE  L +HSEKLAVAFGL++T   + I+V KNLR+C+DCHD  KLIS +  R I+ RD 
Sbjct: 362 EKEQVLLWHSEKLAVAFGLLNTPAGSPIRVIKNLRVCKDCHDAAKLISAIEQRRIVFRDL 421

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F++G CSC DYW
Sbjct: 422 SRFHHFENGVCSCGDYW 438



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 140/312 (44%), Gaps = 9/312 (2%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           A + +  L  A  +F + +      +NA++           A+  + ++L      +++T
Sbjct: 9   AFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRIEPNSVT 68

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
               L ACA + AL +  ++H+    HG  ++  + T ++D+Y+K G +  A + F  + 
Sbjct: 69  LMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAVEAFARIE 128

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
             D  SW A++A  AQ      A+  F+RM+ +G  KPN VT +  L+AC H G  +EG 
Sbjct: 129 RHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQG-HKPNYVTFVHLLSACSHKGLVEEGR 187

Query: 231 KIHEYIREE---RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
           K  + +        D     C  ++D+  + G LD+A +  + +          +++ A 
Sbjct: 188 KYFDLMTARYGIAPDAQHYAC--MVDLLGRAGYLDEAEDFLNRMPGAPHAAVLKSLLSAC 245

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM 347
             + D  R   + ++M  +    + + Y+        AG  ++  R+ + M   GV+ + 
Sbjct: 246 RSYKDVDRGERIAKRMLES-FWDESMPYVVLASIYRAAGKWEEAARIRSLMVERGVRKDP 304

Query: 348 KHYGSVVDLLGR 359
               S +++ GR
Sbjct: 305 GR--SAIEVEGR 314


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 212/531 (39%), Positives = 312/531 (58%), Gaps = 13/531 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A A F  I A +   +NA+L     + +   A+  +  M R S   + ++    L  C  
Sbjct: 394 ARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCED 453

Query: 121 VLALFETLQIHSHVLRHGFLA-DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           V    E   IH+ V+ +G  A ++ +   ++ ++A+ G +  A   FD   V+D  SWN 
Sbjct: 454 V---SEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKDSVSWNT 510

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
            +A L+       A+  F  M+ EG F+P++ T++  +  C  LG  + G  I + +   
Sbjct: 511 KVAALSAREDLHGAITAFYTMQHEG-FRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAA 569

Query: 240 -RLDMNVVVCNAVIDMYAKCGL-LDKAFEVFDNIKC-RKSLVTWNTMVMAFAVHGDGPRA 296
             ++ +VVV +AV++M AKCG  +D+   +F  +   RK LV WNTM+ A+A HG G +A
Sbjct: 570 IEVERDVVVASAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKA 629

Query: 297 LELFEQMG-RAGVKPDDVSYLAALCACNHAGLVDDGVR-LFNSMANCGVKPN-MKHYGSV 353
           L+LF  M  R+ V+PD  ++++ L  C+HAGLV+DG+   F +    G++   ++HY  +
Sbjct: 630 LKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYACL 689

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VD+LGR G L+EA D ++ + +  D V+W +LLGAC  YGD+E  E A+R  +E+  ++ 
Sbjct: 690 VDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSDS 749

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK-VPGFSYIEVGGVIHKFFTSDKSHVKW 472
             +V+LSN+YAA  RW+D  RVR+ M  R VKK VPG S I V   +H+FF  D+SH + 
Sbjct: 750 VGYVVLSNIYAAAGRWEDSIRVREDMAERRVKKRVPGKSSIVVKNRVHEFFARDRSHPQS 809

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
             IY +L+ +   I+E GY   T  VLHD+ EE+KE  L YHSEKLA+AFGLIS     S
Sbjct: 810 DAIYAELERLKGLIREAGYVPDTRLVLHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRHS 869

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF-KDGACSCKDYW 582
           I+V KNLR+C+DCH   K I++V  REI VRD  RFH F KDG CSC DYW
Sbjct: 870 IRVIKNLRVCKDCHTATKFIARVTQREIAVRDCNRFHHFGKDGECSCGDYW 920



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 186/408 (45%), Gaps = 31/408 (7%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
            L  LL++C  +  ++    +QL   +   G  ++ L    + +++ Y  S    L  A+
Sbjct: 26  TLAGLLRRCIGDADLAQG--RQLHRQIVKQGLARNDLLG--NYLVQMY--SKCRSLDDAN 79

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML---RGSHRSDALTCSFALKACA 119
           A F  + +     +N ++   A  S P      Y +M    R  +R + LT    L A A
Sbjct: 80  AAFSALRSRGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGAIA 136

Query: 120 ----------RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
                     R  ++ +   +H  +       D  + T LLD Y K G + SA +VF  +
Sbjct: 137 SGDPSSSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRI 196

Query: 170 GVRDIASWNALIAGLAQGN-LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
            V D+  WNA I   A  +     A+ L +RM +EG+  PN  + +  L++CG   +   
Sbjct: 197 QVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLL-PNRASFVAILSSCGDHSSLPL 255

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
              IH  + E     +VVV  A++ MY +CG +D++  VF+ +  R   V+WN M+ AFA
Sbjct: 256 ARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNH-VSWNAMIAAFA 314

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAAL-CACNHAGL-VDDGVRLFNSMANCGVKPN 346
             G    A  ++ +M + G +P+ ++++ AL  AC+ +   + +   L   +A  G++ +
Sbjct: 315 QCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGD 374

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
           +    ++V + G  G +  A     ++    ++V W  +L A   YGD
Sbjct: 375 VMVGTALVTMYGSTGAIDRARAAFDAIP-AKNIVSWNAMLTA---YGD 418



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 154/337 (45%), Gaps = 11/337 (3%)

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           A+F  +   +   +NA++   A     + A   Y +M +   R + +T   ALKA     
Sbjct: 293 AVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSS 352

Query: 123 A--LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L E+  +H  +   G   D ++GT L+ +Y   G I  A+  FD +  ++I SWNA+
Sbjct: 353 SQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAM 412

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH-EYIREE 239
           +        A EA++LF  MK +    PN+V+ L  L  C  +    E   IH E +   
Sbjct: 413 LTAYGDNGRAREAMELFAAMKRQS-LAPNKVSYLAVLGCCEDV---SEARSIHAEVVGNG 468

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
                  + N V+ M+A+ G L++A   FD    + S V+WNT V A +   D   A+  
Sbjct: 469 LFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKDS-VSWNTKVAALSAREDLHGAITA 527

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLG 358
           F  M   G +PD  + ++ +  C   G ++ G  +   + A   V+ ++    +V++++ 
Sbjct: 528 FYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVASAVMNMVA 587

Query: 359 RAGRLQEACD--IVKSVSMGTDMVLWQTLLGACQLYG 393
           + G   + C+    +      D+V W T++ A   +G
Sbjct: 588 KCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHG 624


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 201/560 (35%), Positives = 311/560 (55%), Gaps = 6/560 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +++ AHL ++ +F    F + + +I  Y       +  A  +F Q+       + +++ G
Sbjct: 71  RKIHAHLGSS-RFAGDAF-LDNSLIHMYC--KCRSVLDARNVFDQMRRKDMVSWTSLIAG 126

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A +  P  A+     ML+G  + +  T +  LKA           QIH+  ++ G+  D
Sbjct: 127 YAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHED 186

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +G+ LLD+YA+ G++  A  VFD++  ++  SWNALI+G A+      A+  F  M  
Sbjct: 187 VYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLR 246

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
            G F+    T     ++   LGA ++G  +H ++ + R  +   V N ++DMYAK G + 
Sbjct: 247 NG-FEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMI 305

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A +VFD +   K LVTWN+M+ AFA +G G  A+  FE+M ++GV  + +++L  L AC
Sbjct: 306 DARKVFDRVD-NKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTAC 364

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           +H GLV +G R F  M    ++P + HY +VV LLGRAG L  A   +  + M     +W
Sbjct: 365 SHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVW 424

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
             LL AC+++ + ++ + A+  + E+  ++ G  VLL N+YA+  +WD   RVR  MK  
Sbjct: 425 GALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTT 484

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            VKK P  S++E+   +H F  +D +H +  EIY+   EI  KI++ GY      VL  +
Sbjct: 485 GVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHV 544

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            ++EKE  L YHSEKLA+AF LI      +I++ KN+RIC DCH   K ISKV+ REI+V
Sbjct: 545 DDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVV 604

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFH F  G+CSC DYW
Sbjct: 605 RDTNRFHHFSSGSCSCGDYW 624



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 142/279 (50%), Gaps = 3/279 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           + ACA+   L +  +IH+H+    F  DA L  +L+ +Y K   ++ A+ VFD+M  +D+
Sbjct: 58  ITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDM 117

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW +LIAG AQ ++  EA+ L   M ++G FKPN  T    L A G       G +IH 
Sbjct: 118 VSWTSLIAGYAQNDMPVEAIGLLPGM-LKGRFKPNGFTFASLLKAAGAYADSGTGRQIHA 176

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +     +V V +A++DMYA+CG +D A  VFD +  +   V+WN ++  FA  GDG 
Sbjct: 177 LAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNG-VSWNALISGFARKGDGE 235

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            AL  F +M R G +    +Y +   +    G ++ G  +   +     K       +++
Sbjct: 236 SALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLL 295

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           D+  ++G + +A  +   V    D+V W ++L A   YG
Sbjct: 296 DMYAKSGSMIDARKVFDRVD-NKDLVTWNSMLTAFAQYG 333



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 118/279 (42%), Gaps = 10/279 (3%)

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           G   P        + AC      ++  KIH ++   R   +  + N++I MY KC  +  
Sbjct: 45  GELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLD 104

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A  VFD ++ RK +V+W +++  +A +     A+ L   M +   KP+  ++ + L A  
Sbjct: 105 ARNVFDQMR-RKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAG 163

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
                  G ++      CG   ++    +++D+  R G++  A  +   +    + V W 
Sbjct: 164 AYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLD-SKNGVSWN 222

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD--DVGRVRKAMKN 441
            L+      GD E A +   +++  G          S+++++  R    + G+   A   
Sbjct: 223 ALISGFARKGDGESALMTFAEMLRNGFE--ATHFTYSSVFSSIARLGALEQGKWVHAHVI 280

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           +  +K+  F    VG  +   +    S +  R++++++D
Sbjct: 281 KSRQKLTAF----VGNTLLDMYAKSGSMIDARKVFDRVD 315


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 185/492 (37%), Positives = 304/492 (61%), Gaps = 4/492 (0%)

Query: 90   TNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTL 149
            ++A+  + +M     R D  T +  + ACA   +L +   +HS+V+++G  ++  +   L
Sbjct: 654  SDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNAL 713

Query: 150  LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN 209
            +++YAK G +  A+ VF ++ V+DI SWN +I G +Q +L +EA++LF  + M+  FKP+
Sbjct: 714  INMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELF--LDMQKQFKPD 771

Query: 210  EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
            ++T+   L AC  L A  +G +IH +I       ++ V  A++DMYAKCGLL  A  +FD
Sbjct: 772  DITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFD 831

Query: 270  NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
             I  +K L++W  M+  + +HG G  A+  F +M  AG++PD+ S+   L AC+H+GL++
Sbjct: 832  MIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLN 890

Query: 330  DGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            +G + FNSM N CGV+P ++HY  VVDLL R G L +A   ++S+ +  D  +W  LL  
Sbjct: 891  EGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 950

Query: 389  CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448
            C+++ DV++AE  +  + E+  +N   +V+L+N+YA  E+W++V ++RK M+ R  K+ P
Sbjct: 951  CRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNP 1010

Query: 449  GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKE 508
            G S+IEVGG  + F   +  H + + I   L ++  +++   Y +    VL +  + EKE
Sbjct: 1011 GCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKE 1070

Query: 509  NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
               C HSEK A+AFG+++     +++V KN R+C DCH++ K +SK   REI++RD  RF
Sbjct: 1071 MIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRF 1130

Query: 569  HRFKDGACSCKD 580
            H FKDG CSC+D
Sbjct: 1131 HHFKDGLCSCRD 1142



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 166/333 (49%), Gaps = 4/333 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH LF +++ P    +N+++ G   +    N +  + QML      D  T    L A A 
Sbjct: 524 AHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWAN 583

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L     +H   ++  F  + +   TLLD+Y+K G +  A +VF +MG   I SW + 
Sbjct: 584 IGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTST 643

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IA   +  L S+A+ LF  M+ +GV +P+  TV   + AC    +  +G  +H Y+ +  
Sbjct: 644 IAAYVREGLYSDAIGLFDEMQSKGV-RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNG 702

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           +  N+ V NA+I+MYAKCG +++A  VF  I   K +V+WNTM+  ++ +     ALELF
Sbjct: 703 MGSNLPVTNALINMYAKCGSVEEARLVFSKIPV-KDIVSWNTMIGGYSQNSLPNEALELF 761

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
             M +   KPDD++    L AC     +D G  +   +   G   ++    ++VD+  + 
Sbjct: 762 LDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKC 820

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           G L  A  ++  +    D++ W  ++    ++G
Sbjct: 821 GLLVLA-QLLFDMIPKKDLISWTVMIAGYGMHG 852



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 166/332 (50%), Gaps = 3/332 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L     +F +I       +N ++   A       +V  +++M +     +  T +  LK
Sbjct: 419 DLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLK 478

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
             A +  + E  ++H +VL+ GF ++  +  +L+  Y K G + SA  +FDE+   D+ S
Sbjct: 479 CFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVS 538

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN++I G      +   +++F +M + GV + +  T++  L A  ++G    G  +H + 
Sbjct: 539 WNSMINGCVVNGFSGNGLEIFIQMLILGV-EVDLTTLVSVLVAWANIGNLSLGRALHGFG 597

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +      VV  N ++DMY+KCG L+ A EVF  +    ++V+W + + A+   G    A
Sbjct: 598 VKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSTIAAYVREGLYSDA 656

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           + LF++M   GV+PD  +  + + AC  +  +D G  + + +   G+  N+    +++++
Sbjct: 657 IGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINM 716

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
             + G ++EA  +   + +  D+V W T++G 
Sbjct: 717 YAKCGSVEEARLVFSKIPV-KDIVSWNTMIGG 747



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 136/279 (48%), Gaps = 6/279 (2%)

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
           CS  L+ CA   +L +  ++HS ++ +G   D  LG  L+ +Y   G++V  +K+FD++ 
Sbjct: 373 CS-VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIM 431

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
              +  WN L++  A+     E+V LFK+M+  GV   N  T    L     LG  KE  
Sbjct: 432 NDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG-NCYTFTCVLKCFAALGKVKECK 490

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           ++H Y+ +     N  V N++I  Y K G ++ A  +FD +     +V+WN+M+    V+
Sbjct: 491 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVN 549

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
           G     LE+F QM   GV+ D  + ++ L A  + G +  G  L            +   
Sbjct: 550 GFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFS 609

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMG-TDMVLWQTLLGA 388
            +++D+  + G L  A ++   V MG T +V W + + A
Sbjct: 610 NTLLDMYSKCGNLNGATEVF--VKMGDTTIVSWTSTIAA 646


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 190/523 (36%), Positives = 300/523 (57%), Gaps = 3/523 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF+ +    +  +  ++ GL  +     A+  +R+M       D  T    L AC  
Sbjct: 231 AKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGA 290

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + A  E  QIH+++ R  +  +  +G+ L+D+Y+K   I  A+ VF  M  R+I SW A+
Sbjct: 291 LAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAM 350

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G  Q   + EAV  F  M+M+G+ KP++ T+   +++C +L + +EG + H       
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQMDGI-KPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L   + V NA++ +Y KCG ++ A  +FD +      V+W  +V  +A  G     ++LF
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ-VSWTALVTGYAQFGKAKETIDLF 468

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGR 359
           E+M   G+KPD V+++  L AC+ AGLV+ G   F+SM  +  + P   HY  ++DL  R
Sbjct: 469 EKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSR 528

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           +GR +EA + +K +    D   W TLL +C+L G++E+ + A+  L+E    N   +VLL
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLL 588

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
            +++AA  +W +V  +R+ M++R VKK PG S+I+    +H F   D+SH     IYEKL
Sbjct: 589 CSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           + +  K+ E GY    S VLHD+ + +K + + +HSEKLA+AFGLI   +   I++ KNL
Sbjct: 649 EWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNL 708

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH+  K ISK+  R+I+VRD VRFH+F DG CSC D+W
Sbjct: 709 RVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 173/362 (47%), Gaps = 35/362 (9%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFALKACARVL 122
           LF  +       +NA++ G + +  P  +V  YR +LR  S R   +T S  +   + + 
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV----------- 171
                  +H  VLR GF A A +G+ L+D+YAK+G I  A++VF EM             
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 172 --------------------RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
                               RD  +W  ++ GL Q  L  EA+D+F+RM+ EGV   ++ 
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGV-GIDQY 279

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T    L ACG L A +EG +IH YI     + NV V +A++DMY+KC  +  A  VF  +
Sbjct: 280 TFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
            CR ++++W  M++ +  +     A+  F +M   G+KPDD +  + + +C +   +++G
Sbjct: 340 TCR-NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
            +        G+   +    ++V L G+ G +++A  +   +S   D V W  L+     
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVTGYAQ 457

Query: 392 YG 393
           +G
Sbjct: 458 FG 459



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 135/274 (49%), Gaps = 12/274 (4%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           KQ+ A++T T  ++  +F V S +++ Y  S    +  A A+FR++   +   + A++ G
Sbjct: 298 KQIHAYITRT-WYEDNVF-VGSALVDMY--SKCRSIRLAEAVFRRMTCRNIISWTAMIVG 353

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              ++    AV  + +M     + D  T    + +CA + +L E  Q H   L  G +  
Sbjct: 354 YGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRY 413

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +   L+ +Y K G I  A ++FDEM   D  SW AL+ G AQ   A E +DLF++M +
Sbjct: 414 ITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLV 473

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN----AVIDMYAKC 258
            G+ KP+ VT +G L+AC   G  ++G    +Y    + D ++V  +     +ID+Y++ 
Sbjct: 474 NGL-KPDGVTFIGVLSACSRAGLVEKG---CDYFDSMQKDHDIVPIDDHYTCMIDLYSRS 529

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           G   +A E    +        W T++ +  + G+
Sbjct: 530 GRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGN 563



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 124/321 (38%), Gaps = 65/321 (20%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMG-------------------------------VRDIASW 177
           LL  YAK G +  A++VFDEM                                 RD  S+
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSY 113

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
           NALI G +     + +V L++ +  E   +P  +T+   +     L     G  +H  + 
Sbjct: 114 NALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVL 173

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN----------------IKCR------- 274
                    V + ++DMYAK GL+  A  VF                  ++C+       
Sbjct: 174 RLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKG 233

Query: 275 -------KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327
                  +  +TW TMV     +G    AL++F +M   GV  D  ++ + L AC     
Sbjct: 234 LFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAA 293

Query: 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
            ++G ++   +     + N+    ++VD+  +   ++ A  + + ++   +++ W  ++ 
Sbjct: 294 SEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTC-RNIISWTAMIV 352

Query: 388 ACQLYGDVEMAEIASRKLVEM 408
               YG    +E A R   EM
Sbjct: 353 G---YGQNACSEEAVRAFSEM 370


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 206/529 (38%), Positives = 316/529 (59%), Gaps = 7/529 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLA-HSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           L  A  +FR +       +N ++     HS  P    L +   L G  ++D ++   AL 
Sbjct: 354 LEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGV-KADKISFVNALP 412

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
            CA   AL +   IHS ++  G  AD +L   +LD+Y        A +VF  M VRD  S
Sbjct: 413 LCATSEALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQVS 472

Query: 177 WNALI-AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           WNA+I A  AQ  L+SEA+ LF++M++ G F P+ ++ + AL+AC    +  EG  +H+ 
Sbjct: 473 WNAMITAYAAQPRLSSEALLLFQQMQLHG-FMPDVISFVAALSACAAQASLAEGKLLHDR 531

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           IRE  L+ N+ V NAV++MYAK G L  A ++F  +     +++WN M+ AFA HG   +
Sbjct: 532 IRETGLESNMTVANAVLNMYAKSGTLVLARKMFGKMPL-PDVISWNGMISAFAQHGHADQ 590

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPNMKHYGSV 353
            L  F +M   G  P+DV++++ + AC+H GLV DGV+LF S+ +    + P  +HY  +
Sbjct: 591 VLRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCM 650

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
           VDL+ RAG+L  A   + +  +  D V+  T+LGA +++ DVE A  ++  L+E+  +  
Sbjct: 651 VDLIARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRS 710

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
             +V+LSNLY    + D+  ++R+ M  ++++K P FS I V   +H+FFT D ++ +  
Sbjct: 711 AAYVVLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTP 770

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           EI E+L+ +  ++ + GY   T+ +LHD+G+E+K+  L YHSEKLA+AFGLIST+  TS+
Sbjct: 771 EILEELERLSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAPGTSL 830

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++ KNLR+C DCH   K ISK+  REI+VRD  RFH F +G CSC DYW
Sbjct: 831 RIIKNLRVCGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 155/307 (50%), Gaps = 10/307 (3%)

Query: 91  NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150
            A+  ++ ML    + D + C   L AC+    L E   IH  +    F      G  L+
Sbjct: 286 EALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGFMREIRFDRHVNAGNALI 345

Query: 151 DVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE 210
           ++Y K G +  A +VF  M  RD+ SWN +IA   Q +   EA+ L   M+++GV K ++
Sbjct: 346 NMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGV-KADK 404

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
           ++ + AL  C    A  +G  IH +I E  +  +V++ NA++DMY  C   D A  VF  
Sbjct: 405 ISFVNALPLCATSEALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRA 464

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPR----ALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +K R   V+WN M+ A+A     PR    AL LF+QM   G  PD +S++AAL AC    
Sbjct: 465 MKVRDQ-VSWNAMITAYAAQ---PRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQA 520

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            + +G  L + +   G++ NM    +V+++  ++G L  A  +   + +  D++ W  ++
Sbjct: 521 SLAEGKLLHDRIRETGLESNMTVANAVLNMYAKSGTLVLARKMFGKMPL-PDVISWNGMI 579

Query: 387 GACQLYG 393
            A   +G
Sbjct: 580 SAFAQHG 586



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 135/277 (48%), Gaps = 7/277 (2%)

Query: 115 LKACARVLALFET-LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           L AC+    L E   +IH  +      +D  + TTLL +Y K   +  A+KVFD +  + 
Sbjct: 106 LGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKR 165

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           +  WNA+I   AQ +   +A+ +F  M +EGV K   +T +G L AC  L   +    + 
Sbjct: 166 VVEWNAMITAYAQQDHHEQAIQVFYAMLLEGV-KAERITFIGVLDACSKLKDLEVAKLVK 224

Query: 234 EYIREERLD--MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
             + E   D   +     A+++ Y  CG L++AF  F   + R  L+    M+  +    
Sbjct: 225 LCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFS--RHRLELILATAMITQYTQRE 282

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
               ALELF+ M   GVK D ++ +A L AC+    +++G  +   M       ++    
Sbjct: 283 RWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGFMREIRFDRHVNAGN 342

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +++++ G+ G L+EA ++ +S+    D++ W T++ A
Sbjct: 343 ALINMYGKCGSLEEAVEVFRSMQH-RDVISWNTIIAA 378



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 5/197 (2%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           ++H+ + +        +G  L+ +Y   G ++ AK  FD M V+D  +W  LI    Q  
Sbjct: 19  EVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARLIRAHGQIG 78

Query: 189 LASEAVDLFKRMKMEGVFKPNE--VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
            + +A+ LF+ M++EGV   N   V VLGA +A   L   +EG +IH  +R   ++ +  
Sbjct: 79  DSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPEL--LEEGRRIHGVLRGTAMESDHY 136

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V   ++ MY KC  ++ A +VFD I+  K +V WN M+ A+A      +A+++F  M   
Sbjct: 137 VSTTLLHMYGKCSSVEDARKVFDGIR-HKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLE 195

Query: 307 GVKPDDVSYLAALCACN 323
           GVK + ++++  L AC+
Sbjct: 196 GVKAERITFIGVLDACS 212



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 3/161 (1%)

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G ++H  I +  +D    + + ++ MY  CG L  A   FD +  + +L TW  ++ A  
Sbjct: 17  GKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDAL-TWARLIRAHG 75

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN-HAGLVDDGVRLFNSMANCGVKPNM 347
             GD  +AL LF  M   GV P + +++A L AC+    L+++G R+   +    ++ + 
Sbjct: 76  QIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDH 135

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
               +++ + G+   +++A  +   +     +V W  ++ A
Sbjct: 136 YVSTTLLHMYGKCSSVEDARKVFDGIRH-KRVVEWNAMITA 175


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 192/522 (36%), Positives = 298/522 (57%), Gaps = 2/522 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++ +     +  ++ G A +  P  A+     MLR   R +  T +  LKA   
Sbjct: 114 ARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGA 173

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
                   Q+H+  +++ +  D  +G+ LLD+YA+  ++  A  VFD +  ++  SWNAL
Sbjct: 174 CGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNAL 233

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IAG A+       +  F  M+  G F     T     +A   +GA ++G  +H ++ +  
Sbjct: 234 IAGFARKADGETTLMKFAEMQRNG-FGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSG 292

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
             +   V N ++ MYAK G +  A +VFD +  ++ LVTWNTM+ A A +G G  A+  F
Sbjct: 293 QKLTAFVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTALAQYGLGKEAVAHF 351

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
           E++ + G++ + +++L+ L AC+H GLV +G   F+ M +  V+P + HY S VDLLGRA
Sbjct: 352 EEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRA 411

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L+EA   V  + M     +W  LLGAC+++ + +M + A+  + E+  ++ G  VLL 
Sbjct: 412 GLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLY 471

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA+  +W+D  RVRK MK   VKK P  S++++   +H F   D +H K  +IY   +
Sbjct: 472 NIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWE 531

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           EI  +IK+ GY   T+ VL  I E+E+E  L YHSEK+A+AF LI+     SI++ KN+R
Sbjct: 532 EINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIR 591

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IC DCH   K +SKV+ REI+VRD  RFH F +G+CSC DYW
Sbjct: 592 ICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 137/279 (49%), Gaps = 3/279 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           + ACA+   L     IH+H+ R     DA L  +L+ +Y K G +  A+ VFD+M  RD+
Sbjct: 67  IAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDV 126

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW  LIAG AQ  + +EA+ L   M +   F+PN  T    L A G  G    G+++H 
Sbjct: 127 VSWTYLIAGYAQNYMPAEAIGLLPDM-LRARFRPNGFTFTSLLKATGACGGCSIGEQMHA 185

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +   D +V V +A++DMYA+C  +D A  VFD +   K+ V+WN ++  FA   DG 
Sbjct: 186 LAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL-VSKNEVSWNALIAGFARKADGE 244

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
             L  F +M R G      +Y +   A    G ++ G  +   +   G K       +++
Sbjct: 245 TTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTML 304

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            +  ++G + +A  +   +    D+V W T+L A   YG
Sbjct: 305 GMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTALAQYG 342



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 146/308 (47%), Gaps = 14/308 (4%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V S +++ YA     ++A    +F ++ + +   +NA++ G A  +     ++ + +M R
Sbjct: 198 VGSALLDMYARCEQMDMAIM--VFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQR 255

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
               +   T S    A AR+ AL +   +H+H+++ G    A +G T+L +YAK G +V 
Sbjct: 256 NGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVD 315

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+KVFD M  RD+ +WN ++  LAQ  L  EAV  F+ ++  G+ + N++T L  L AC 
Sbjct: 316 ARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGI-QLNQITFLSVLTACS 374

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
           H G  KEG    + +++  +   +    + +D+  + GLL +A      +    +   W 
Sbjct: 375 HGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWG 434

Query: 282 TMVMAFAVHGDGPR----ALELFEQMGRAGVKPDDVSYLAALCAC-NHAGLVDDGVRLFN 336
            ++ A  +H +       A  +FE      + PDD      L       G  +D  R+  
Sbjct: 435 ALLGACRMHKNAKMGQYAADHVFE------LDPDDTGPPVLLYNIYASTGKWNDAARVRK 488

Query: 337 SMANCGVK 344
            M   GVK
Sbjct: 489 MMKATGVK 496


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 178/442 (40%), Positives = 273/442 (61%), Gaps = 2/442 (0%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           +A+L T ++  Y   G +  A + F+ M VR + SWNA++AG  + + A +A+ +FK M 
Sbjct: 177 NAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMV 236

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
            +   +PNE T+   L  C +L A   G ++H++  +  L   V    +++ MY KCG L
Sbjct: 237 RDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDL 296

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           D A ++F  ++ R  ++ WN M+  +A HGDG  A+ELFE+M   GV+P+ ++++A L A
Sbjct: 297 DGACKLFSEMRIR-DVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTA 355

Query: 322 CNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMV 380
           C H G+ D G++ F  M    G++  + HY  +VDLL RAG L+ A  +++S+       
Sbjct: 356 CIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPS 415

Query: 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440
            + TLL A ++Y ++E AE A+ KL+E    N G +V L+N+YA   +W DV RVR+ MK
Sbjct: 416 AYGTLLNASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMK 475

Query: 441 NRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLH 500
           +  V K PG+S++E+ GVIH F ++D+ H +   I+E+L ++  ++K  GY       LH
Sbjct: 476 DNAVVKTPGYSWVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALH 535

Query: 501 DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREI 560
           D+ E  K   L  HSEKLA+AFGL+ST+   ++++FKNLR+C DCH   KLISK+ +REI
Sbjct: 536 DVDESLKVQMLMRHSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCHTAAKLISKIEDREI 595

Query: 561 IVRDRVRFHRFKDGACSCKDYW 582
           I+RD  RFH F+ G CSC DYW
Sbjct: 596 ILRDTTRFHHFRSGHCSCGDYW 617



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 121/232 (52%), Gaps = 3/232 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACA 119
           A   F  +   S   +NAV+ G   +S+  +A+  ++ M+R +  R +  T S  L  C+
Sbjct: 197 AMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCS 256

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
            + AL    Q+H    +         GT+L+ +Y K G++  A K+F EM +RD+ +WNA
Sbjct: 257 NLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNA 316

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE- 238
           +I+G A      EA++LF++MK +GV +PN +T +  L AC H G    G +  E ++E 
Sbjct: 317 MISGYAHHGDGREAIELFEKMKSQGV-EPNWITFVAVLTACIHTGMCDFGMQCFERMQEV 375

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
             ++  V   + ++D+  + G L++A  +  ++  +     + T++ A  V+
Sbjct: 376 YGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVY 427



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 117/290 (40%), Gaps = 60/290 (20%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGLAQGNLASEAVDLFKR 199
           DA+   TLL  +   G++  A+ +F  M    R++ SWN +++GL++     EA  +F  
Sbjct: 81  DAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLA 140

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M                                           N +  NA++  +A  G
Sbjct: 141 MPAR----------------------------------------NSISWNAMVSCFAHAG 160

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
            +  A E F++   +++ V W  MV  +   G   +A++ FE M    +    VS+ A +
Sbjct: 161 DMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSL----VSWNAVV 216

Query: 320 CACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSV------VDLLGRAGRLQEAC---DI 369
                    +D + +F +M  +  V+PN     SV      +  LG   ++ + C    +
Sbjct: 217 AGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPL 276

Query: 370 VKSVSMGTDMVLWQ----TLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
            + V+ GT +V        L GAC+L+ ++ + ++ +   +  G  + GD
Sbjct: 277 SRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGD 326


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 189/529 (35%), Positives = 317/529 (59%), Gaps = 4/529 (0%)

Query: 53  SPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS 112
           S    L  A  +F ++   +   + +++         ++A+  + +M     R D  T +
Sbjct: 342 SKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVT 401

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
             + ACA   +L +   +HS+V+++G  ++  +   L+++YAK G +  A+ VF ++ V+
Sbjct: 402 SIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK 461

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           DI SWN +I G +Q  L +EA++LF  + M+  FKP+++T+   L AC  L A  +G +I
Sbjct: 462 DIVSWNTMIGGYSQNLLPNEALELF--LDMQKQFKPDDITMACVLPACAGLAALDKGREI 519

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H +I       ++ V  A++DMYAKCGLL  A  +FD I  +K L++W  M+  + +HG 
Sbjct: 520 HGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHGF 578

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYG 351
           G  A+  F +M  AG++PD+ S+ A L AC+H+GL+++G + FNSM N CGV+P ++HY 
Sbjct: 579 GNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYA 638

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
            VVDLL R G L +A   ++S+ +  D  +W  LL  C+++ DV++AE  +  + E+  +
Sbjct: 639 CVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPD 698

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           N   +V+L+N+YA  E+W++V ++RK M+ R  K+ PG S+IEVGG  + F   +  H +
Sbjct: 699 NTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQ 758

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
            ++I   L ++  +++   Y++    VL +  + EKE   C HSEK A+AFG+++     
Sbjct: 759 AKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGR 818

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           +++V KN R+C DCH++ K +SK    EI++RD  RFH FKDG CSC+D
Sbjct: 819 TVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 182/371 (49%), Gaps = 8/371 (2%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           K++  ++   G F S    V S I  ++    +     AH LF +++ P    +N+++ G
Sbjct: 215 KRVHGYVLKLG-FGSNTAVVNSLIAAYFKFGGVES---AHNLFDELSEPDVVSWNSMING 270

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
              +    N +  + QML      D  T    L ACA +  L     +H   ++  F  +
Sbjct: 271 CVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEE 330

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
            +   TLLD+Y+K G +  A +VF +MG   I SW ++IA   +  L S+A+ LF  M+ 
Sbjct: 331 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQS 390

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
           +GV +P+  TV   + AC    +  +G  +H Y+ +  +  N+ V NA+I+MYAKCG ++
Sbjct: 391 KGV-RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVE 449

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
           +A  VF  I   K +V+WNTM+  ++ +     ALELF  M +   KPDD++    L AC
Sbjct: 450 EARLVFSKIPV-KDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPAC 507

Query: 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
                +D G  +   +   G   ++    ++VD+  + G L  A  ++  +    D++ W
Sbjct: 508 AGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLA-QLLFDMIPKKDLISW 566

Query: 383 QTLLGACQLYG 393
             ++    ++G
Sbjct: 567 TVMIAGYGMHG 577



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 168/332 (50%), Gaps = 3/332 (0%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           +L     +F +I       +N ++   A       +V  +++M +     +  T +  LK
Sbjct: 144 DLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLK 203

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
             A +  + E  ++H +VL+ GF ++  +  +L+  Y K G + SA  +FDE+   D+ S
Sbjct: 204 CFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVS 263

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN++I G      +   +++F +M + GV + +  T++  L AC ++G    G  +H + 
Sbjct: 264 WNSMINGCVVNGFSGNGLEIFIQMLILGV-EVDLTTLVSVLVACANIGNLSLGRALHGFG 322

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +      VV  N ++DMY+KCG L+ A EVF  +    ++V+W +++ A+   G    A
Sbjct: 323 VKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSIIAAYVREGLYSDA 381

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           + LF++M   GV+PD  +  + + AC  +  +D G  + + +   G+  N+    +++++
Sbjct: 382 IGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINM 441

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
             + G ++EA  +   + +  D+V W T++G 
Sbjct: 442 YAKCGSVEEARLVFSKIPV-KDIVSWNTMIGG 472



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 138/279 (49%), Gaps = 6/279 (2%)

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
           CS  L+ CA   +L +  ++HS ++ +G   D  LG  L+ +Y   G++V  +K+FD++ 
Sbjct: 98  CS-VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIM 156

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
              +  WN L++  A+     E+V LFK+M+  GV   N  T    L     LG  KE  
Sbjct: 157 NDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG-NCYTFTCVLKCFAALGKVKECK 215

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           ++H Y+ +     N  V N++I  Y K G ++ A  +FD +     +V+WN+M+    V+
Sbjct: 216 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVN 274

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
           G     LE+F QM   GV+ D  + ++ L AC + G +  G  L            +   
Sbjct: 275 GFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFS 334

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMG-TDMVLWQTLLGA 388
            +++D+  + G L  A ++   V MG T +V W +++ A
Sbjct: 335 NTLLDMYSKCGNLNGATEVF--VKMGDTTIVSWTSIIAA 371


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 181/439 (41%), Positives = 275/439 (62%), Gaps = 3/439 (0%)

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           L   LLD+Y+K G + SA +VF+ MG R + SW ++IAG A+  L+  +V LF  M+ E 
Sbjct: 261 LNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKED 320

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
           +F PN +T+   L AC  L A + G +IH +I      ++  V NA++DMY KCG L  A
Sbjct: 321 LF-PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLA 379

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
             +FD I   K LV+W  M+  + +HG G  A+  F +M  +G++PD+VS+++ L AC+H
Sbjct: 380 RLLFDMIP-EKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSH 438

Query: 325 AGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
           +GL+D+G   FN M N C ++P  +HY  +VDLL RAG L +A   +K + +  D  +W 
Sbjct: 439 SGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWG 498

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443
            LL  C++Y DV++AE  +  + E+   N G +VLL+N+YA  E+W++V ++R+ +  R 
Sbjct: 499 ALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRG 558

Query: 444 VKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIG 503
           ++K PG S+IE+ G +H F T D SH    +I   L +   ++KE G+       L    
Sbjct: 559 LRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKAD 618

Query: 504 EEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
           + EKE ALC HSEK+A+AFG++S     +++V KNLR+C DCH++ K +SK+  R+II+R
Sbjct: 619 DTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILR 678

Query: 564 DRVRFHRFKDGACSCKDYW 582
           D  RFH FKDG+CSC+ +W
Sbjct: 679 DSNRFHHFKDGSCSCRGHW 697



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 129/275 (46%), Gaps = 6/275 (2%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           +++ Y+ S    L  A  +F  +   S   + +++ G A       +V  + +M +    
Sbjct: 265 LLDMYSKS--GNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLF 322

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            +++T +  L ACA + AL    +IH H+LR+GF  D  +   L+D+Y K G +  A+ +
Sbjct: 323 PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLL 382

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           FD +  +D+ SW  +IAG       SEA+  F  M+  G+ +P+EV+ +  L AC H G 
Sbjct: 383 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGI-EPDEVSFISILYACSHSGL 441

Query: 226 WKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
             EG      +R    ++        ++D+ A+ G L KA++    +        W  ++
Sbjct: 442 LDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALL 501

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
               ++ D   A ++ E +    ++P++  Y   L
Sbjct: 502 CGCRIYHDVKLAEKVAEHVFE--LEPENTGYYVLL 534



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 139/304 (45%), Gaps = 24/304 (7%)

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
           CS  L+ CA + ++ +  +IHS +  +    D +LG+ L+ +Y   G++   +++FD++ 
Sbjct: 105 CS-VLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVA 163

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE-- 228
              +  WN L+ G A+     E++ LFKRM+  G+ +      L        + +W    
Sbjct: 164 NEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMI 223

Query: 229 GDKIHEYIREERLDM-------------------NVVVCNAVIDMYAKCGLLDKAFEVFD 269
              +   + E+ LD+                    + + N ++DMY+K G L+ A +VF+
Sbjct: 224 SGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFE 283

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
            +   +S+V+W +M+  +A  G    ++ LF +M +  + P+ ++    L AC     ++
Sbjct: 284 TMG-ERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALE 342

Query: 330 DGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
            G  +   +   G   +     ++VD+  + G L  A  +   +    D+V W  ++   
Sbjct: 343 RGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIP-EKDLVSWTVMIAGY 401

Query: 390 QLYG 393
            ++G
Sbjct: 402 GMHG 405



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 29/220 (13%)

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T    L  C  L + ++G +IH  I+   ++++ V+ + ++ MY  CG L +   +FD +
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK--------------PDDVSYLA 317
              K  + WN ++  +A  G+   +L LF++M   G++               D +S+ +
Sbjct: 163 ANEKVFL-WNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNS 221

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV--------VDLLGRAGRLQEACDI 369
            +      GL + G+ LF  M   G+  ++    SV        +D+  ++G L  A  +
Sbjct: 222 MISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQV 281

Query: 370 VKSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408
            +  +MG   +V W +++     Y    +++++ R   EM
Sbjct: 282 FE--TMGERSVVSWTSMIAG---YAREGLSDMSVRLFHEM 316


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 192/522 (36%), Positives = 298/522 (57%), Gaps = 2/522 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++ +     +  ++ G A +  P  A+     MLR   R +  T +  LKA   
Sbjct: 11  ARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGA 70

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
                   Q+H+  +++ +  D  +G+ LLD+YA+  ++  A  VFD +  ++  SWNAL
Sbjct: 71  CGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNAL 130

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IAG A+       +  F  M+  G F     T     +A   +GA ++G  +H ++ +  
Sbjct: 131 IAGFARKADGETTLMKFAEMQRNG-FGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSG 189

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
             +   V N ++ MYAK G +  A +VFD +  ++ LVTWNTM+ A A +G G  A+  F
Sbjct: 190 QKLTAFVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTALAQYGLGKEAVAHF 248

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
           E++ + G++ + +++L+ L AC+H GLV +G   F+ M +  V+P + HY S VDLLGRA
Sbjct: 249 EEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRA 308

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L+EA   V  + M     +W  LLGAC+++ + +M + A+  + E+  ++ G  VLL 
Sbjct: 309 GLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLY 368

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA+  +W+D  RVRK MK   VKK P  S++++   +H F   D +H K  +IY   +
Sbjct: 369 NIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWE 428

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           EI  +IK+ GY   T+ VL  I E+E+E  L YHSEK+A+AF LI+     SI++ KN+R
Sbjct: 429 EINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIR 488

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IC DCH   K +SKV+ REI+VRD  RFH F +G+CSC DYW
Sbjct: 489 ICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 3/242 (1%)

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
           +Y K G +  A+ VFD+M  RD+ SW  LIAG AQ  + +EA+ L   M +   F+PN  
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDM-LRARFRPNGF 59

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T    L A G  G    G+++H    +   D +V V +A++DMYA+C  +D A  VFD +
Sbjct: 60  TFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 119

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
              K+ V+WN ++  FA   DG   L  F +M R G      +Y +   A    G ++ G
Sbjct: 120 -VSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG 178

Query: 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             +   +   G K       +++ +  ++G + +A  +   +    D+V W T+L A   
Sbjct: 179 RWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTALAQ 237

Query: 392 YG 393
           YG
Sbjct: 238 YG 239



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 146/308 (47%), Gaps = 14/308 (4%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V S +++ YA     ++  A  +F ++ + +   +NA++ G A  +     ++ + +M R
Sbjct: 95  VGSALLDMYARC--EQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQR 152

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
               +   T S    A AR+ AL +   +H+H+++ G    A +G T+L +YAK G +V 
Sbjct: 153 NGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVD 212

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+KVFD M  RD+ +WN ++  LAQ  L  EAV  F+ ++  G+ + N++T L  L AC 
Sbjct: 213 ARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGI-QLNQITFLSVLTACS 271

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
           H G  KEG    + +++  +   +    + +D+  + GLL +A      +    +   W 
Sbjct: 272 HGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWG 331

Query: 282 TMVMAFAVHGDGPR----ALELFEQMGRAGVKPDDVSYLAALCAC-NHAGLVDDGVRLFN 336
            ++ A  +H +       A  +FE      + PDD      L       G  +D  R+  
Sbjct: 332 ALLGACRMHKNAKMGQYAADHVFE------LDPDDTGPPVLLYNIYASTGKWNDAARVRK 385

Query: 337 SMANCGVK 344
            M   GVK
Sbjct: 386 MMKATGVK 393


>gi|387169524|gb|AFJ66185.1| hypothetical protein 11M19.3 [Arabidopsis halleri]
          Length = 511

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 173/435 (39%), Positives = 278/435 (63%), Gaps = 5/435 (1%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           +++   K+GE   AKKV      +++ +WN +I G  +     EA+   K M      KP
Sbjct: 81  IIESLMKIGESSLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKP 140

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           N+ +   +LAAC  LG       +H  + +  +++N ++ +A++D+YAKCG ++ + EVF
Sbjct: 141 NKFSFASSLAACARLGDLHHAKWVHSLMIDAGIELNAILSSALVDVYAKCGDIETSREVF 200

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
            ++K R  +  WN M+  FA HG    A+ +F +M    V PD +++L  L AC+H GL+
Sbjct: 201 YSVK-RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLL 259

Query: 329 DDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
             G   F+ M+    ++P ++HYG++VDLLGRAGR++EA ++++S+ +  D+V+W++LL 
Sbjct: 260 GKGKVYFDIMSQRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLS 319

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           + + Y + E+ EIA + L +  S   GD+VLLSN+Y+  ++W+   +VR+ M    ++K 
Sbjct: 320 SSRTYKNPELGEIAIQNLSKAKS---GDYVLLSNIYSTTKKWESAQKVRELMTKEGIRKA 376

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
            G S++E GGVIH+F   D SH++ + IY+ L+ ++ K K  G+ + T  VL D+ EEEK
Sbjct: 377 KGKSWVEYGGVIHRFKAGDTSHIEIKAIYKVLEGLIQKTKSEGFVSDTDLVLMDVSEEEK 436

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           E  L YHSEKLA+A+ ++ +S  T I++ KN+R+C DCH+ IK +SK+ NR II+RDR+R
Sbjct: 437 EENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIR 496

Query: 568 FHRFKDGACSCKDYW 582
           FHRF+DG CSCKDYW
Sbjct: 497 FHRFEDGLCSCKDYW 511



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 131/242 (54%), Gaps = 7/242 (2%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH- 104
           IIE  +L  + E + A  + R  +  +   +N ++ G   + +   A+   + ML  S  
Sbjct: 81  IIE--SLMKIGESSLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDI 138

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           + +  + + +L ACAR+  L     +HS ++  G   +A+L + L+DVYAK G+I ++++
Sbjct: 139 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDAGIELNAILSSALVDVYAKCGDIETSRE 198

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VF  +   D++ WNA+I G A   LA+EA+ +F  M+ E V  P+ +T LG L AC H G
Sbjct: 199 VFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHV-SPDSITFLGLLTACSHCG 257

Query: 225 AWKEGDKIHEYIREERLDMNVVV--CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNT 282
              +G K++  I  +R  +   +    A++D+  + G + +A+E+ +++     +V W +
Sbjct: 258 LLGKG-KVYFDIMSQRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRS 316

Query: 283 MV 284
           ++
Sbjct: 317 LL 318


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 194/510 (38%), Positives = 297/510 (58%), Gaps = 5/510 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDA--LTCSFALKACARVLALFETLQIHSH 133
           +NA++ G +H  +    +  + +M +     D    T +  LK+ A   A+  T Q+H+ 
Sbjct: 375 WNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHAL 434

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
             + G L+D+ +   L+D Y K G++  A KVF E    DI S   ++  L+Q +   +A
Sbjct: 435 AEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDA 494

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253
           + LF +M  +G+ +P+   +   L AC  L A+++G ++H ++ + +   +V   NA++ 
Sbjct: 495 IKLFVQMLRKGL-EPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVY 553

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313
            YAKCG ++ A   F  +  R  +V+W+ M+   A HG G RAL+LF +M   GV P+ +
Sbjct: 554 AYAKCGSIEDADMAFSGLPER-GIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHI 612

Query: 314 SYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
           +  + L ACNHAGLVDD  + F SM    G+    +HY  ++D+LGRAG+L++A ++V +
Sbjct: 613 TLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNN 672

Query: 373 VSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV 432
           +    +  +W  LLGA +++ D E+  +A+ KL  +     G  VLL+N YA+   WD++
Sbjct: 673 MPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEM 732

Query: 433 GRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYA 492
            +VRK MK+ +VKK P  S++E+   +H F   DKSH   R+IY KL E+   + + GY 
Sbjct: 733 AKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYV 792

Query: 493 AGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLI 552
                 LHD+   EKE  L +HSE+LAVAF LIST     I+V KNLRICRDCH   K I
Sbjct: 793 PNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYI 852

Query: 553 SKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           SK+ +REII+RD  RFH F +G CSC DYW
Sbjct: 853 SKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 153/315 (48%), Gaps = 5/315 (1%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++     + +  +A+  +R+M+    R +    S  + AC     L    Q+H  V+
Sbjct: 173 WNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVV 232

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R G+  D      L+D+Y+K+G+I  A  VF++M   D+ SWNA I+G         A++
Sbjct: 233 RTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALE 292

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           L  +MK  G+  PN  T+   L AC   GA+  G +IH ++ +   D +  V   ++DMY
Sbjct: 293 LLLQMKSSGLV-PNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMY 351

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVS 314
           AK G LD A +VFD +  R+ L+ WN ++   +  G     L LF +M + G+  D + +
Sbjct: 352 AKHGFLDDARKVFDFMP-RRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRT 410

Query: 315 YLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373
            LA++     +       R  +++A   G+  +      ++D   + G+L  A  + K  
Sbjct: 411 TLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKE- 469

Query: 374 SMGTDMVLWQTLLGA 388
           S   D++   T++ A
Sbjct: 470 SRSDDIISSTTMMTA 484



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 169/372 (45%), Gaps = 7/372 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +Q+   +  TG ++  +F   + +++ Y  S L ++  A  +F ++ A     +NA + G
Sbjct: 225 RQVHGAVVRTG-YEKDVFTANA-LVDMY--SKLGDIEMAATVFEKMPAADVVSWNAFISG 280

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
                    A+    QM       +  T S  LKACA   A     QIH  +++     D
Sbjct: 281 CVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFD 340

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
             +   L+D+YAK G +  A+KVFD M  RD+  WNALI+G +      E + LF RM+ 
Sbjct: 341 EFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRK 400

Query: 203 EGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           EG+    N  T+   L +     A     ++H    +  L  +  V N +ID Y KCG L
Sbjct: 401 EGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQL 460

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           D A +VF   +    +++  TM+ A +    G  A++LF QM R G++PD     + L A
Sbjct: 461 DYAIKVFKESRS-DDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNA 519

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C      + G ++   +       ++    ++V    + G +++A D+  S      +V 
Sbjct: 520 CTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDA-DMAFSGLPERGIVS 578

Query: 382 WQTLLGACQLYG 393
           W  ++G    +G
Sbjct: 579 WSAMIGGLAQHG 590



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 138/291 (47%), Gaps = 8/291 (2%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
            L ++L+  +S+ A+   H +Q+ A     G        V + +I+ Y      +L YA 
Sbjct: 411 TLASVLKSTASSEAI--CHTRQVHALAEKIGLLSDS--HVINGLIDSYW--KCGQLDYAI 464

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F++  +        ++  L+      +A+  + QMLR     D+   S  L AC  + 
Sbjct: 465 KVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLS 524

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           A  +  Q+H+H+++  F +D   G  L+  YAK G I  A   F  +  R I SW+A+I 
Sbjct: 525 AYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIG 584

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE-RL 241
           GLAQ      A+DLF RM  EGV  PN +T+   L+AC H G   +  K  E ++E   +
Sbjct: 585 GLAQHGHGKRALDLFHRMLDEGV-APNHITLTSVLSACNHAGLVDDAKKYFESMKETFGI 643

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           D        +ID+  + G L+ A E+ +N+  + +   W  ++ A  VH D
Sbjct: 644 DRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRD 694



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 135/274 (49%), Gaps = 10/274 (3%)

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           +LF    +HSH+L+ G LA       LL +Y++     +A+ VFDE+      SW++L+ 
Sbjct: 19  SLFAGAHLHSHLLKSGLLAG--FSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVT 76

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242
             +   +  +A+  F+ M+  GV  P     L  +  C      + G ++H      RL 
Sbjct: 77  AYSNNGMPRDALLAFRAMRGRGV--PCNEFALPVVLKCA--PDVRFGAQVHALAVATRLV 132

Query: 243 MNVVVCNAVIDMYAKCGLLDKAFEVFD---NIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            +V V NA++ +Y   G++D+A  +FD    +   ++ V+WNTM+ A+  +     A+ +
Sbjct: 133 HDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGV 192

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           F +M  +G +P++  +   + AC  +  ++ G ++  ++   G + ++    ++VD+  +
Sbjct: 193 FREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSK 252

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            G ++ A  + + +    D+V W   +  C  +G
Sbjct: 253 LGDIEMAATVFEKMP-AADVVSWNAFISGCVTHG 285


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 194/542 (35%), Positives = 307/542 (56%), Gaps = 5/542 (0%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V++ +I+ Y  S  +++  A  +   +       +N V+ GL   +    AV   + ++ 
Sbjct: 160 VKNALIQLY--SKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIIS 217

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                +  T     + CA +  +    Q+H+ +L+     D  +G++++D+Y K G ++S
Sbjct: 218 EGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLS 277

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
            +  FD +  R++ SW ++IA   Q     EA++LF +M+++ +  PNE T+     +  
Sbjct: 278 GRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCI-PPNEYTMAVLFNSAA 336

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L A   GD++H    +  L  NV+V NA+I MY K G +  A  VF N+ C  +++TWN
Sbjct: 337 GLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTC-CNIITWN 395

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS-MAN 340
            ++   + HG G  AL +F+ M   G +P+ V+++  + AC H  LVD+G   FN  M  
Sbjct: 396 AIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQ 455

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + P ++HY  +V LL R+GRL EA + ++S  +  D+V W+TLL AC ++   +    
Sbjct: 456 FRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRK 515

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
            +  L+++   + G ++LLSN++A   RWD V  +RK M+ R+VKK PG S++E+  V H
Sbjct: 516 IAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAH 575

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F + D  H +   IYE + +++ KI+  GY      VLHDI +E+K + L YHSEKLAV
Sbjct: 576 VFTSEDIKHPEANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAV 635

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           A+GL+ T     I V KNLR+C DCH  IKLISKV NR I+VRD  RFH F++G CSC D
Sbjct: 636 AYGLMKTPSGAPITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGD 695

Query: 581 YW 582
           YW
Sbjct: 696 YW 697



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 131/274 (47%), Gaps = 6/274 (2%)

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLG--TTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           A A+ L    T+  H  +  H +  D+ +    +L+++Y K  E+  A+K+FD M  R++
Sbjct: 30  ADAKNLKFGRTIHAHLTITNHNY-RDSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNV 88

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW+AL+AG  Q     E  +LFK+M ++    PNE  +  A+++C     + EG + H 
Sbjct: 89  VSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDS-QMYVEGKQCHG 147

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           Y  +  L+ +  V NA+I +Y+KC  +  A ++   +     +  +N +V     H    
Sbjct: 148 YALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVP-GNDIFCYNLVVNGLLQHTHMA 206

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
            A+++ + +   G++ ++ +Y+     C     +  G ++   M    +  ++    S++
Sbjct: 207 EAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSII 266

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           D+ G+ G +         +    ++V W +++ A
Sbjct: 267 DMYGKCGNVLSGRTFFDRLQ-SRNVVSWTSIIAA 299


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 200/558 (35%), Positives = 316/558 (56%), Gaps = 33/558 (5%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           N +  A  LF +  A + +  NA+            A+  +  M+    R D ++   A+
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAI 344

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV------------------- 156
            +C+++  +      H +VLR+GF +   +   L+D+Y K                    
Sbjct: 345 SSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVV 404

Query: 157 ------------GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
                       GE+ +A + F+ M  ++I SWN +I+GL QG+L  EA+++F  M+ + 
Sbjct: 405 TWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQE 464

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
               + VT++   +ACGHLGA      I+ YI +  + ++V +   ++DM+++CG  + A
Sbjct: 465 GVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESA 524

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
             +F+++  R  +  W   + A A+ G+  RA+ELF+ M   G+KPD V+++ AL AC+H
Sbjct: 525 MSIFNSLTNR-DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSH 583

Query: 325 AGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
            GLV  G  +F SM    GV P   HYG +VDLLGRAG L+EA  +++ + M  + V+W 
Sbjct: 584 GGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWN 643

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443
           +LL AC++ G+VEMA  A+ K+  +     G +VLLSN+YA+  RW+D+ +VR +MK + 
Sbjct: 644 SLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKG 703

Query: 444 VKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIG 503
           ++K PG S I++ G  H+F + D+SH +   I   LDE+  +    G+    S VL D+ 
Sbjct: 704 LRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVD 763

Query: 504 EEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
           E+EK   L  HSEKLA+A+GLIS+++ T+I++ KNLR+C DCH   K  SKVYNREII+R
Sbjct: 764 EKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILR 823

Query: 564 DRVRFHRFKDGACSCKDY 581
           D  RFH  + G CSC D+
Sbjct: 824 DNNRFHYIRQGKCSCGDF 841



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 184/353 (52%), Gaps = 25/353 (7%)

Query: 58  LAYAHALFRQINAPSTN-DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           L++A  +F    +  T   +N+++RG A S     A+L + +M+      D  T  F L 
Sbjct: 83  LSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLS 142

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           ACA+  A    +QIH  +++ G+  D  +  +L+  YA+ GE+ SA+KVFDEM  R++ S
Sbjct: 143 ACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVS 202

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W ++I G A+ + A +AVDLF RM  +    PN VT++  ++AC  L   + G+K++ +I
Sbjct: 203 WTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI 262

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
           R   +++N ++ +A++DMY KC  +D A  +FD      +L   N M   +   G    A
Sbjct: 263 RNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGA-SNLDLCNAMASNYVRQGLTREA 321

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACN-----------HAGLVDDGVRLFNSMANCGVKP 345
           L +F  M  +GV+PD +S L+A+ +C+           H  ++ +G   ++++ N     
Sbjct: 322 LGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN----- 376

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
                 +++D+  +  R   A  I   +S  T +V W +++      G+V+ A
Sbjct: 377 ------ALIDMYMKCHRQDTAFRIFDRMSNKT-VVTWNSIVAGYVENGEVDAA 422


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 178/426 (41%), Positives = 274/426 (64%), Gaps = 8/426 (1%)

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           ++  K +F +MG + + SWN +I    +  +  EAV+L+ RM+ +G F+P+ V++   L 
Sbjct: 259 VMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADG-FEPDAVSITSVLP 317

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           ACG   A   G KIH YI  ++L  N+++ NA+IDMYAKCG L+KA +VF+N+K R  +V
Sbjct: 318 ACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSR-DVV 376

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W  M+ A+   G G  A+ LF ++  +G+ PD ++++  L AC+HAGL+++G   F  M
Sbjct: 377 SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 436

Query: 339 AN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
            +   + P ++H   +VDLLGRAG+++EA   ++ +SM  +  +W  LLGAC+++ D ++
Sbjct: 437 TDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
             +A+ KL ++     G +VLLSN+YA   RW++V  +R  MK++ +KK PG S +EV  
Sbjct: 497 GLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR 556

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
           +IH F   D+SH +  EIY +LD ++ K+KE GY   +   LHD+ EE+KE  L  HSEK
Sbjct: 557 IIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEK 616

Query: 518 LAVAFGLISTSEA-----TSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
           LA+ F L++T E       +I++ KNLRIC DCH   KLIS++ +REII+RD  RFH F+
Sbjct: 617 LAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 676

Query: 573 DGACSC 578
            G CSC
Sbjct: 677 FGVCSC 682



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 152/343 (44%), Gaps = 36/343 (10%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           A + L ++A A  +F +I   +    N ++R   ++      V  +  M   + R D  T
Sbjct: 83  AYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYT 142

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
               LKAC+    +    +IH    + G  +   +G  L+ +Y K G +  A+ V DEM 
Sbjct: 143 FPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMS 202

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            RD+ SWN+L+ G AQ     +A+++ +  +ME V   ++   + +L             
Sbjct: 203 RRDVVSWNSLVVGYAQNQRFDDALEVCR--EMESVKISHDAGTMASLLPA---------- 250

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +     E     NV+    V DM+ K G              +KSLV+WN M+  +  +
Sbjct: 251 -VSNTTTE-----NVMY---VKDMFFKMG--------------KKSLVSWNVMIGVYMKN 287

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
                A+EL+ +M   G +PD VS  + L AC     +  G ++   +    + PN+   
Sbjct: 288 AMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 347

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            +++D+  + G L++A D+ +++    D+V W  ++ A    G
Sbjct: 348 NALIDMYAKCGCLEKARDVFENMK-SRDVVSWTAMISAYGFSG 389



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 133/289 (46%), Gaps = 5/289 (1%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           Y   +F ++   S   +N ++     ++ P  AV  Y +M       DA++ +  L AC 
Sbjct: 261 YVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACG 320

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
              AL    +IH ++ R   + + LL   L+D+YAK G +  A+ VF+ M  RD+ SW A
Sbjct: 321 DTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTA 380

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I+         +AV LF +++  G+  P+ +  +  LAAC H G  +EG    + + + 
Sbjct: 381 MISAYGFSGRGCDAVALFSKLQDSGLV-PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439

Query: 240 -RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            ++   +     ++D+  + G + +A+    ++    +   W  ++ A  VH D    L 
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499

Query: 299 LFEQMGRAGVKPDDVSYLAALCAC-NHAGLVDDGVRLFNSMANCGVKPN 346
             +++ +  + P+   Y   L      AG  ++   + N M + G+K N
Sbjct: 500 AADKLFQ--LAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN 546



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 2/196 (1%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +HS ++      ++ LG  L+  YA + ++ SA+KVFDE+  R++   N +I        
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             E V +F  M    V +P+  T    L AC   G    G KIH    +  L   + V N
Sbjct: 121 YGEGVKVFGTMCGCNV-RPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGN 179

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
            ++ MY KCG L +A  V D +  R+ +V+WN++V+ +A +     ALE+  +M    + 
Sbjct: 180 GLVSMYGKCGFLSEARLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 310 PDDVSYLAALCACNHA 325
            D  +  + L A ++ 
Sbjct: 239 HDAGTMASLLPAVSNT 254


>gi|387169573|gb|AFJ66232.1| hypothetical protein 34G24.32 [Capsella rubella]
          Length = 598

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 172/435 (39%), Positives = 278/435 (63%), Gaps = 5/435 (1%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           +++   K GE   AKKV      +++ +WN +I G  +     EA+   K M      KP
Sbjct: 168 IIESLMKTGEYGLAKKVLRRASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKP 227

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           N+ +   ALAAC  LG       +H  + +  +++N ++ +A++D+YAKCG ++ + EVF
Sbjct: 228 NKFSFASALAACARLGDLHHAKWVHSLMIDAGIELNTILSSALVDVYAKCGDIETSREVF 287

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
            ++K    +  WN M+  FA HG    A+ +F +M    V PD +++L  L AC+H GL+
Sbjct: 288 YSVKW-NDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGILTACSHCGLL 346

Query: 329 DDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           ++G   F  M+    ++P ++HYG++VDLLGRAG+++EA D+++S+ +  D+V+W++LL 
Sbjct: 347 EEGKEFFGLMSQRFSIQPKLEHYGAMVDLLGRAGQVKEAYDLIESMPIEPDVVIWRSLLS 406

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           + + Y + E+ EIA + L +  S   GD+VLLSN+Y++ ++W++  +VR+ M    ++K 
Sbjct: 407 SARTYKNPELGEIAIQNLSKAKS---GDYVLLSNIYSSTKKWENAQKVRELMTKEGIRKA 463

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
            G S++E GGVIH+F   D SH+  + IY+ L+ ++ K K  G+ + T  VL D+ EEEK
Sbjct: 464 KGKSWVEFGGVIHRFKAGDTSHIDTKAIYKVLEGLIQKAKSEGFVSDTDLVLMDVSEEEK 523

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           E  L YHSEKLA+A+ ++ +S  + I++ KN+R+C DCH+ IK +SK+ NR II+RDR+R
Sbjct: 524 EENLNYHSEKLALAYVILKSSPGSEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIR 583

Query: 568 FHRFKDGACSCKDYW 582
           FHRF+DG CSCKDYW
Sbjct: 584 FHRFEDGLCSCKDYW 598



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 127/241 (52%), Gaps = 5/241 (2%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH- 104
           IIE  +L    E   A  + R+ +  +   +N ++ G   + +   A+   + ML  S  
Sbjct: 168 IIE--SLMKTGEYGLAKKVLRRASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDI 225

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           + +  + + AL ACAR+  L     +HS ++  G   + +L + L+DVYAK G+I ++++
Sbjct: 226 KPNKFSFASALAACARLGDLHHAKWVHSLMIDAGIELNTILSSALVDVYAKCGDIETSRE 285

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VF  +   D++ WNA+I G A   LA+EA+ +F  M+ E V  P+ +T LG L AC H G
Sbjct: 286 VFYSVKWNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHV-SPDSITFLGILTACSHCG 344

Query: 225 AWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
             +EG +    + +   +   +    A++D+  + G + +A+++ +++     +V W ++
Sbjct: 345 LLEEGKEFFGLMSQRFSIQPKLEHYGAMVDLLGRAGQVKEAYDLIESMPIEPDVVIWRSL 404

Query: 284 V 284
           +
Sbjct: 405 L 405


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 192/521 (36%), Positives = 301/521 (57%), Gaps = 6/521 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++       + A++ G   +  P  AV  Y  M       D +T +  L ACA 
Sbjct: 350 AEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAG 409

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L + + +H    R G  +  ++  +L+D+Y+K   I  A +VF  +  +++ SW ++
Sbjct: 410 LGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSI 469

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I GL     + EA+  F++M +    KPN VT++  L+AC  +GA   G +IH +     
Sbjct: 470 ILGLRLNYRSFEALFFFQQMILS--LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           L  +  + NA++DMY +CG ++ A+  F++  C K + +WN ++  +A  G G  A+ELF
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNS--CEKDVASWNILLTGYAQQGKGGLAVELF 585

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGR 359
            +M  + V PD++++ + LCAC+ +G+V DG+  F SM +   + PN+KHY SVVDLLGR
Sbjct: 586 HKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGR 645

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGRL++A + +K + +  D  +W  LL AC++Y +VE+ E+A++ + EM + + G ++LL
Sbjct: 646 AGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILL 705

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
            NLYA   +WD+V RVRK M+   +   PG S++EV G +H F T D  H + +EI   L
Sbjct: 706 CNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVL 765

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +    K++  G +        DI +  K    C HSE+LA+AFGLI+T   T I V KNL
Sbjct: 766 EGFYEKMEATGLSMSKDSRRDDI-DASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNL 824

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
            +C +CH+ +K ISKV  R I VRD  +FH FKDG CSC D
Sbjct: 825 YMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 170/337 (50%), Gaps = 3/337 (0%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
             +L  A  +F ++       +N ++ G A +     A+  Y +ML    R D  T    
Sbjct: 142 FGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCV 201

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ C  +  L    ++H HV+R+GF +D  +   L+ +Y K G+I SA+ VFD M  RD 
Sbjct: 202 LRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDR 261

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWNA+I+G  + ++  E + LF  M+ E    P+ +T+   ++AC  LG  + G ++H 
Sbjct: 262 ISWNAMISGYFENDVCLEGLRLFFMMR-EFFVDPDLMTMTSVISACEALGDERLGREVHG 320

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           Y+ +      V V N++I M++  G  D+A  VF  ++  K LV+W  M+  +  +G   
Sbjct: 321 YVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF-KDLVSWTAMISGYEKNGLPE 379

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
           +A+E +  M   GV PD+++  + L AC   GL+D G+ L       G+   +    S++
Sbjct: 380 KAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLI 439

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
           D+  +   + +A ++   +    +++ W +++   +L
Sbjct: 440 DMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLRL 475



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 3/284 (1%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L+ C    A  E  ++HS+V +        LG  LL ++ + G++V A  VF +M  RD+
Sbjct: 101 LRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDL 160

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWN L+ G A+     EA++L+ RM   G+ +P+  T    L  CG L     G ++H 
Sbjct: 161 FSWNVLVGGYAKAGYFDEALNLYHRMLWVGI-RPDVYTFPCVLRTCGGLPDLARGREVHL 219

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
           ++     + +V V NA+I MY KCG +  A  VFD +  R+  ++WN M+  +  +    
Sbjct: 220 HVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMP-RRDRISWNAMISGYFENDVCL 278

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
             L LF  M    V PD ++  + + AC   G    G  +   +   G    +    S++
Sbjct: 279 EGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLI 338

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            +    G   EA ++V S     D+V W  ++   +  G  E A
Sbjct: 339 QMHSSVGCWDEA-EMVFSKMEFKDLVSWTAMISGYEKNGLPEKA 381



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 6/153 (3%)

Query: 178 NALIAGLA-QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           N+LI  L  +G+L    + L    +++      E T +  L  C    A  EG ++H Y+
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQ--VSVEEETYIALLRLCEWKRAASEGSRVHSYV 120

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +    + V + NA++ M+ + G L +A+ VF  +   + L +WN +V  +A  G    A
Sbjct: 121 SKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM-AERDLFSWNVLVGGYAKAGYFDEA 179

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
           L L+ +M   G++PD  ++   L  C   GL D
Sbjct: 180 LNLYHRMLWVGIRPDVYTFPCVLRTC--GGLPD 210


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 192/485 (39%), Positives = 293/485 (60%), Gaps = 15/485 (3%)

Query: 99  MLRGSHRSDALTCSFALKACARVLALFETLQ-IHSHVLRHGFLADALLGTTLLDVYAKVG 157
           ML    R D      A KAC  +L+  +  Q +HS  ++ G+  D  +G++++D+YAK G
Sbjct: 1   MLDNGVRPDDHIFPSATKACG-ILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCG 59

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217
           EI  A+K+FDEM  R++ SW+ +I G +Q     EA+ LFK+  +E +   N+ T    +
Sbjct: 60  EIGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDL-DVNDFTFSSVV 118

Query: 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
             CG+    + G +IH    +   D +  V +++I +Y+KCG+++ A+ VF  I  R +L
Sbjct: 119 RVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIR-NL 177

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337
             WN M++A A H    +A +LF+QM   G+KP+ +++L  L AC+HAGLV+ G   F  
Sbjct: 178 GMWNAMLIACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKGQFYFEL 237

Query: 338 MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
           M   G++P  +HY S+VDLLGRAG+L++A  I+K + M     +W  LL  C+++GD E+
Sbjct: 238 MKEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIHGDTEL 297

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
           A   + ++ E+G            + +A  R+++  R RK ++++ VKK  G S++E G 
Sbjct: 298 ASFVADRVFELGP-----------VSSAAGRYEEAARARKMLRDQGVKKETGLSWVEEGN 346

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
            IH F   D+SH   ++IY+KL+E+  +++  GY A TS VL ++  EEK   + YHSE+
Sbjct: 347 RIHTFAAGDRSHPYTKDIYKKLEELGEEMERAGYIADTSFVLQEVDGEEKNQTIRYHSER 406

Query: 518 LAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACS 577
           LA+AFGLIS      I+V KNLR+C DCH  IK +SK   R IIVRD  RFHRF+DG CS
Sbjct: 407 LAIAFGLISFPPERPIRVMKNLRVCGDCHTAIKFMSKCCGRTIIVRDNNRFHRFEDGNCS 466

Query: 578 CKDYW 582
           C+DYW
Sbjct: 467 CRDYW 471



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 121/252 (48%), Gaps = 5/252 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V S +++ YA     E+  A  +F ++   +   ++ ++ G +   +   A+  ++Q L 
Sbjct: 47  VGSSMVDMYA--KCGEIGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALI 104

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                +  T S  ++ C     L    QIH   L+  + + + +G++L+ +Y+K G I  
Sbjct: 105 EDLDVNDFTFSSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIED 164

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV-FKPNEVTVLGALAAC 220
           A  VF E+ +R++  WNA++   AQ     +A DLFK  +MEGV  KPN +T L  L AC
Sbjct: 165 AYLVFHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFK--QMEGVGMKPNFITFLCVLYAC 222

Query: 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280
            H G  ++G    E ++E  ++       +++D+  + G L  A  +   +    +   W
Sbjct: 223 SHAGLVEKGQFYFELMKEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVW 282

Query: 281 NTMVMAFAVHGD 292
             ++    +HGD
Sbjct: 283 GALLTGCRIHGD 294


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 184/445 (41%), Positives = 279/445 (62%), Gaps = 6/445 (1%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +   T++  Y K G++ +A++VF  M  R + SW+A+I    +    SEA+ +F +M 
Sbjct: 148 DVVSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMT 207

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL---DMNVVVCNAVIDMYAKC 258
             G FKP+ V ++  L  C HLGA + G  +H +++ ERL     NV++  A++DMY KC
Sbjct: 208 GNG-FKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKC 266

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318
           G +++A+ VFD ++    +V WN M+   A++G G RALELF +M   G  P++ +++ A
Sbjct: 267 GCMNEAWWVFDGVQS-HDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVA 325

Query: 319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD 378
           LCAC H G VD+G  +F SM + G++P  +HYG + DLLGRAG L+EA  ++  + M   
Sbjct: 326 LCACIHTGRVDEGEDVFRSMRDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPH 385

Query: 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438
              W  L+ +C ++ +V + E   +KL+E+  ++ G +V L NLYA    W+D   +RK 
Sbjct: 386 ASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVALFNLYAVNGLWEDAKALRKM 445

Query: 439 MKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498
           M+ R  KK  G S+IE  G++H+F + D  H + R IY  L+++  +++  GY   TS V
Sbjct: 446 MEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRLIYALLEDMEQRLQLIGYVKDTSQV 505

Query: 499 LHDI-GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYN 557
           L D+  EE+K N L YHSE+LA+AFG+++      I++ KNLR+CRDCH   KL+SK+Y 
Sbjct: 506 LLDMDNEEDKGNTLSYHSERLALAFGILNIPHDMPIRIVKNLRVCRDCHVHAKLVSKLYQ 565

Query: 558 REIIVRDRVRFHRFKDGACSCKDYW 582
           REIIVRDR RFH F+DG CSC D+W
Sbjct: 566 REIIVRDRHRFHLFRDGVCSCNDFW 590



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 136/295 (46%), Gaps = 11/295 (3%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
            +L  A  +F ++       ++A++     + + + A+  + QM     + DA+     L
Sbjct: 163 GDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVL 222

Query: 116 KACARVLALFETLQIHSHVLRH---GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           K CA + AL     +H  +      G   + +L T L+D+Y K G +  A  VFD +   
Sbjct: 223 KTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSH 282

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D+  WNA+I GLA       A++LF+RM  +G F PNE T + AL AC H G   EG+ +
Sbjct: 283 DVVLWNAMIGGLAMNGHGKRALELFRRMLDKG-FVPNESTFVVALCACIHTGRVDEGEDV 341

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
              +R+  ++        + D+  + GLL++A  V  ++        W  ++ +  +H +
Sbjct: 342 FRSMRDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNN 401

Query: 293 GPRALELFEQMGRAGV--KPDDVS-YLAALCACNHAGLVDDGVRLFNSMANCGVK 344
               + + E++G+  +  +PDD   Y+A        GL +D   L   M   G K
Sbjct: 402 ----VGVGERVGKKLIELEPDDGGRYVALFNLYAVNGLWEDAKALRKMMEERGAK 452


>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
 gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
          Length = 552

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 196/472 (41%), Positives = 301/472 (63%), Gaps = 5/472 (1%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLW-YRQMLR-GSHRSDALTCSFALKACARV 121
           LF QI  P+   +N+++R L  +       L  YR MLR GS R +  T +FALKACA V
Sbjct: 80  LFDQIPDPTAFCYNSLIRALPAAGAAPAPALAVYRLMLRAGSPRPNTFTLAFALKACAAV 139

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-RDIASWNAL 180
            A  E  Q+H+  LR G  A A + T LL++YAK  ++  A+ VFD M   + + +W+A+
Sbjct: 140 PAPGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVFDGMAPDKSLVAWSAM 199

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G ++  + +EA+ LF+ M+  GV +P+EVT++G ++AC   GA   G  +H YI  + 
Sbjct: 200 INGYSRVGMVTEALGLFREMQAVGV-EPDEVTMVGVISACAKAGALDLGKWVHAYIDRKG 258

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           + +++ +  A+IDMYAKCGL+++A  VFD +   K    W+ M++ FA+HG    AL LF
Sbjct: 259 ITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALGLF 317

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
            +M    V+P++V+++  L AC H+GLVDDG R ++ M N G+KP+M++YG ++DLL R+
Sbjct: 318 SRMLELKVRPNNVTFIGVLSACAHSGLVDDGRRYWSIMQNLGIKPSMENYGCMIDLLCRS 377

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L +A   V  + +  + ++W+TLL AC+    +++AE AS++L+E+  +N  ++VLLS
Sbjct: 378 GLLDDAYSFVIDMPISPNSIIWRTLLVACKSSNRIDIAESASKRLLELEPHNPENYVLLS 437

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           NL A+  +WD V  +RK MK+ +V  V G S IE+ G +H+F  SD SH + +EI   L 
Sbjct: 438 NLCASNSQWDRVSYLRKKMKDSNVTAVAGCSSIEINGYLHEFVVSDDSHPEIKEIRLVLR 497

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
           EI  +++  G+   T+ VLHD+GEEEKE ALC HSE+LA+A+GL+ T    S
Sbjct: 498 EIADRVRRAGHKPWTAAVLHDVGEEEKEVALCEHSERLAIAYGLLKTKAPMS 549


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 203/563 (36%), Positives = 325/563 (57%), Gaps = 9/563 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           + +Q  +  TG  +  +  V++ ++  Y    L     A ++F +++      ++A++  
Sbjct: 81  RSIQLAILGTGIEEESI--VQTALVSMYG--KLGHCTDAASVFLRMSHRDVVAWSAMVAA 136

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A +  P  A+  +RQM       + +T    L ACA +  L     +H  V   G  + 
Sbjct: 137 YARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSG 196

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
            ++GT L+++Y K G I +A + F ++  +++ +W+A+ A  A+ +   +A+ +  RM +
Sbjct: 197 VVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDL 256

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHE--YIREERLDMNVVVCNAVIDMYAKCGL 260
           EG+  PN  T +  L AC  + A K+G +IHE   +    L+ +V V  A+++MY+KCG 
Sbjct: 257 EGLV-PNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGN 315

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L  A ++FD I     LV WN+++   A HG   +ALELFE+M   G++P  +++ + L 
Sbjct: 316 LALAGDMFDKI-AHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLF 374

Query: 321 ACNHAGLVDDGVRLFNS-MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC+HAG++D G + F S + + G+ P  +H+G +VDLLGRAG + ++ D++  +      
Sbjct: 375 ACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHP 434

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           V W   LGAC+ Y +++ A  A+  L ++       +VLLSN+YA   RW DV R+R+AM
Sbjct: 435 VAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAM 494

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           +     K  G S+IEV   +H+F + D  H +  EI+ +L  +   +KE GY   T  VL
Sbjct: 495 QLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKEAGYVPDTEMVL 554

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           HD+ +E KE  + YHSEKLA+AF L++T E + I+V KNLR+C DCH   K ISK+ NRE
Sbjct: 555 HDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNRE 614

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           I+VRD  RFHRF++GACSC DYW
Sbjct: 615 IVVRDCNRFHRFQNGACSCGDYW 637



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 180/362 (49%), Gaps = 10/362 (2%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           A S +  +      F ++       +NA++     +       L++R ML        + 
Sbjct: 4   AYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVG 63

Query: 111 CSFALKAC--ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE 168
            S  L AC  AR + +  ++Q+   +L  G   ++++ T L+ +Y K+G    A  VF  
Sbjct: 64  ISIFLSACTDAREITIGRSIQLA--ILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLR 121

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
           M  RD+ +W+A++A  A+     EA+ LF++M ++GV  PN+VT++  L AC  LG  + 
Sbjct: 122 MSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGV-APNKVTLVSGLDACASLGDLRS 180

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G  +H+ +  + +   VVV  A++++Y KCG ++ A E F  I   K++V W+ +  A+A
Sbjct: 181 GALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI-VEKNVVAWSAISAAYA 239

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF--NSMANCGVKPN 346
            +     A+ +  +M   G+ P+  ++++ L AC     +  G R+     +   G++ +
Sbjct: 240 RNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESD 299

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASRKL 405
           +    ++V++  + G L  A D+   ++   D+VLW +L+     +G  E A E+  R  
Sbjct: 300 VYVLTALVNMYSKCGNLALAGDMFDKIAH-LDLVLWNSLIATNAQHGQTEKALELFERMR 358

Query: 406 VE 407
           +E
Sbjct: 359 LE 360



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 3/240 (1%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           +L  Y+++G I + +K FDEM V DI SWNALIA              F+ M ++G+  P
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGI-NP 59

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
            EV +   L+AC        G  I   I    ++   +V  A++ MY K G    A  VF
Sbjct: 60  GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVF 119

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
             +  R  +V W+ MV A+A +G    AL LF QM   GV P+ V+ ++ L AC   G +
Sbjct: 120 LRMSHR-DVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDL 178

Query: 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
             G  +   +   G++  +    ++V+L G+ GR++ A +    + +  ++V W  +  A
Sbjct: 179 RSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI-VEKNVVAWSAISAA 237


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/535 (36%), Positives = 311/535 (58%), Gaps = 9/535 (1%)

Query: 51  ALSPLNELAYAHALFRQINAP-STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL 109
           A S   ELA A  +F       +   + A++ G   +     AV+ + +M       +  
Sbjct: 346 AYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEF 405

Query: 110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
           T S  LKA   +L      QIH+ V++  +     +GT LL  Y+K G    A  +F  +
Sbjct: 406 TYSAMLKASLSILPP----QIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMI 461

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW-KE 228
             +D+ +W+A+++  AQ      A  LF +M ++G+ KPNE T+   + AC    A   +
Sbjct: 462 EQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGI-KPNEFTISSVIDACACPSAGVDQ 520

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G + H    + R    + V +A++ MY++ G +D A  VF+  +  + LV+WN+M+  +A
Sbjct: 521 GRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFER-QTDRDLVSWNSMISGYA 579

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNM 347
            HG   +A+E F QM  +G++ D V++LA +  C H GLV +G + F+SM  +  + P M
Sbjct: 580 QHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTM 639

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
           +HY  +VDL  RAG+L E   +++ +      ++W+TLLGAC+++ +VE+ + ++ KL+ 
Sbjct: 640 EHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLS 699

Query: 408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDK 467
           +  ++   +VLLSN+YAA  +W +   VRK M  R VKK  G S+I++   +H F   DK
Sbjct: 700 LEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDK 759

Query: 468 SHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
           SH    +IY+KL  I+ ++K+ GY+  TS VLHDI E++KE  L  HSE+LA+AFGLI+T
Sbjct: 760 SHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIAT 819

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
              T +Q+ KNLR+C DCH V+K++S + +REII+RD  RFH F  GACSC D+W
Sbjct: 820 PPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 153/312 (49%), Gaps = 11/312 (3%)

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF-LADALLGTTLLDVYAKVGEI 159
           RG    D+ T S  LKAC  V       Q+H   ++ G    +   GT+L+D+Y K G +
Sbjct: 92  RGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSV 151

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
               +VF+ M  +++ +W +L+ G A   + SE + LF RM+ EG++ PN  T    L+A
Sbjct: 152 CEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW-PNPFTFASVLSA 210

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
               GA   G ++H    +     +V VCN++++MYAKCGL++ A  VF+ ++ R  +V+
Sbjct: 211 VASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETR-DMVS 269

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           WNT++    ++     AL+LF +      K    +Y   +  C +       + L   + 
Sbjct: 270 WNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANL----KQLALARQLH 325

Query: 340 NCGVKPNMKHYGSVV----DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395
           +C +K      G+V+    D   + G L +A +I    +   ++V W  ++  C   GD+
Sbjct: 326 SCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDI 385

Query: 396 EMAEIASRKLVE 407
            +A +   ++ E
Sbjct: 386 PLAVVLFSRMRE 397



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 149/336 (44%), Gaps = 11/336 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A ++F  +       +N ++ GL  +     A+  + +      +    T +  +K CA 
Sbjct: 255 AKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCAN 314

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD-EMGVRDIASWNA 179
           +  L    Q+HS VL+HGF     + T L D Y+K GE+  A  +F    G R++ SW A
Sbjct: 315 LKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTA 374

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I+G  Q      AV LF RM+ + V  PNE T    L A   +       +IH  + + 
Sbjct: 375 IISGCIQNGDIPLAVVLFSRMREDRVM-PNEFTYSAMLKASLSILP----PQIHAQVIKT 429

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
                  V  A++  Y+K G  + A  +F  I+ +K +V W+ M+   A  GD   A  L
Sbjct: 430 NYQHIPFVGTALLASYSKFGSTEDALSIFKMIE-QKDVVAWSAMLSCHAQAGDCEGATYL 488

Query: 300 FEQMGRAGVKPDD--VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           F +M   G+KP++  +S +   CAC  AG VD G +             +    ++V + 
Sbjct: 489 FNKMAIQGIKPNEFTISSVIDACACPSAG-VDQGRQFHAISIKYRYHDAICVSSALVSMY 547

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            R G +  A  IV       D+V W +++     +G
Sbjct: 548 SRKGNIDSA-QIVFERQTDRDLVSWNSMISGYAQHG 582



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 152/351 (43%), Gaps = 16/351 (4%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F  +   +   + ++L G AH+   +  +  + +M       +  T +  L A A   A
Sbjct: 157 VFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGA 216

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L    ++H+  ++ G  +   +  +L+++YAK G +  AK VF+ M  RD+ SWN L+AG
Sbjct: 217 LDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG 276

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
           L       EA+ LF   +   + K  + T    +  C +L       ++H  + +    +
Sbjct: 277 LQLNECELEALQLFHESRAT-MGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHL 335

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
              V  A+ D Y+KCG L  A  +F      +++V+W  ++     +GD P A+ LF +M
Sbjct: 336 TGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM 395

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV-KPNMKHYGSVVDLL----G 358
               V P++ +Y A L A          + +     +  V K N +H   V   L     
Sbjct: 396 REDRVMPNEFTYSAMLKA---------SLSILPPQIHAQVIKTNYQHIPFVGTALLASYS 446

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           + G  ++A  I K +    D+V W  +L      GD E A     K+   G
Sbjct: 447 KFGSTEDALSIFKMIEQ-KDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQG 496


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/580 (34%), Positives = 326/580 (56%), Gaps = 15/580 (2%)

Query: 7   LLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           +LQ C+ NGAV      H K ++  L       + L       I  Y+     ELA    
Sbjct: 69  ILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVL-------INAYSKCGFVELA--RQ 119

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F  +   S   +N ++     +   + A+  + +M     +    T S  L AC     
Sbjct: 120 VFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCD 179

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
             E  ++H   ++     +  +GT LLD+YAK G I  A +VF+ M  +   +W++++AG
Sbjct: 180 ALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAG 239

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q     EA+ L++R +   + + N+ T+   + AC +L A  EG ++H  IR+     
Sbjct: 240 YVQSKNYEEALLLYRRAQRMSL-EQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGS 298

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           NV V ++ +DMYAKCG L +++ +F  ++  K++  WNT++  FA H      + LFE+M
Sbjct: 299 NVFVASSAVDMYAKCGSLRESYIIFSEVQ-EKNIELWNTIISGFAKHARPKEVMILFEKM 357

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGR 362
            + G+ P++V++ + L  C H GLV++G R F  M    G+ PN+ HY  +VD+LGRAG 
Sbjct: 358 QQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGL 417

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L EA +++KS+       +W +LL +C++  ++E+AE+A++KL E+   N G+ VLLSN+
Sbjct: 418 LSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNI 477

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           YAA ++W+++ + RK +++ DVKKV G S+I++   +H F   + SH + REI   LD +
Sbjct: 478 YAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNL 537

Query: 483 MFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
           + +++++GY       LHD+   +KE  L  HSEKLA+ FGL+   E +++++ KNLRIC
Sbjct: 538 VIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRIC 597

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            DCH+ +K  S    R IIVRD  RFH F DG CSC ++W
Sbjct: 598 VDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 192/526 (36%), Positives = 314/526 (59%), Gaps = 9/526 (1%)

Query: 64  LFRQINAPSTNDFNAVLRG-LAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARV 121
           +F ++   S   + A++ G + + +  T A+  + +M+   H   +  T S A KAC  +
Sbjct: 327 VFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNL 386

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
                  Q+     + G  +++ +  +++ ++ K   +  A++ F+ +  +++ S+N  +
Sbjct: 387 SDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFL 446

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            G  +     +A  L   +  E     +  T    L+   ++G+ ++G++IH  + +  L
Sbjct: 447 DGTCRNLNFEQAFKLLSEIT-ERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGL 505

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
             N  VCNA+I MY+KCG +D A  VF+ ++ R ++++W +M+  FA HG   R LE F 
Sbjct: 506 SCNQPVCNALISMYSKCGSIDTASRVFNFMENR-NVISWTSMITGFAKHGFAIRVLETFN 564

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRA 360
           QM   GVKP++V+Y+A L AC+H GLV +G R FNSM  +  +KP M+HY  +VDLL RA
Sbjct: 565 QMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRA 624

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G L +A + + ++    D+++W+T LGAC+++ + E+ ++A+RK++E+  N    ++ LS
Sbjct: 625 GLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLS 684

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N+YA   +W++   +R+ MK R++ K  G S+IEVG  IHKF+  D +H    +IY++LD
Sbjct: 685 NIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELD 744

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENA----LCYHSEKLAVAFGLISTSEATSIQVF 536
            ++ +IK  GY   T  VLH + EE  E      L  HSEK+AVAFGLISTS++  ++VF
Sbjct: 745 RLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVF 804

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+C DCH+ +K IS V  REI++RD  RFH FKDG CSC DYW
Sbjct: 805 KNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 171/369 (46%), Gaps = 10/369 (2%)

Query: 29  LTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSK 88
           L  TG F+S +  V   +I+ +     N    A+ +F +++  +   +  ++        
Sbjct: 192 LMKTGHFESDV-CVGCSLIDMFVKGE-NSFENAYKVFDKMSELNVVTWTLMITRCMQMGF 249

Query: 89  PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
           P  A+ ++  M+     SD  T S    ACA +  L    Q+HS  +R G + D  +  +
Sbjct: 250 PREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECS 307

Query: 149 LLDVYAKV---GEIVSAKKVFDEMGVRDIASWNALIAGLAQG-NLASEAVDLFKRMKMEG 204
           L+D+YAK    G +   +KVFD M    + SW ALI G  +  NLA+EA++LF  M  +G
Sbjct: 308 LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQG 367

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
             +PN  T   A  ACG+L   + G ++     +  L  N  V N+VI M+ K   ++ A
Sbjct: 368 HVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDA 427

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
              F+++   K+LV++NT +     + +  +A +L  ++    +     ++ + L    +
Sbjct: 428 QRAFESLS-EKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVAN 486

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384
            G +  G ++ + +   G+  N     +++ +  + G +  A  +   +    +++ W +
Sbjct: 487 VGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFME-NRNVISWTS 545

Query: 385 LLGACQLYG 393
           ++     +G
Sbjct: 546 MITGFAKHG 554



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
           G    D++T S  LK+C R         +H+ ++      D++L  +L+ +Y+K G+   
Sbjct: 56  GIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAK 115

Query: 162 AKKVFDEM---GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           A+ VF+ M   G RD+ SW+A++A         +A+ +F    +E    PN+      + 
Sbjct: 116 AEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEF-LELGLVPNDYCYTAVIR 174

Query: 219 ACGHLGAWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKC-GLLDKAFEVFDNIKCRKS 276
           AC +      G     ++ +    + +V V  ++IDM+ K     + A++VFD +    +
Sbjct: 175 ACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMS-ELN 233

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
           +VTW  M+      G    A+  F  M  +G + D  +  +   AC
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           I S   V + + V D      L AG  +G  A  A+DL  R   +G+   + VT    L 
Sbjct: 16  IKSQPSVSNRINVADRLILRHLNAGDLRG--AVSALDLMAR---DGIRPMDSVTFSSLLK 70

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKS 276
           +C     ++ G  +H  + E  ++ + V+ N++I +Y+K G   KA +VF+ ++   ++ 
Sbjct: 71  SCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRD 130

Query: 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
           +V+W+ M+  +  +G    A+++F +    G+ P+D  Y A + AC+++  V  G
Sbjct: 131 VVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVG 185


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 201/558 (36%), Positives = 314/558 (56%), Gaps = 33/558 (5%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           N +  A  LF +  A + +  NA+            A+     M+    R D ++   A+
Sbjct: 284 NAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAI 343

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV------------------- 156
            +C+++  +      H +VLR+GF +   +   L+D+Y K                    
Sbjct: 344 SSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVV 403

Query: 157 ------------GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
                       GE+ +A + F+ M  ++I SWN +I+ L Q N+  EA+++F  M+ + 
Sbjct: 404 TWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQE 463

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
               + VT++   +ACGHLGA      I+ YI + R+ ++V +   ++DM+++CG  + A
Sbjct: 464 CVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESA 523

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
             +F+++  R  +  W   + A A+ G+  RA+ELF +M   G+KPD V ++ AL AC H
Sbjct: 524 MSIFNSLTNR-DVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCH 582

Query: 325 AGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
            GLV  G  +FNSM    GV P   HYG +VDLLGRAG L+EA  ++K +    + V+W 
Sbjct: 583 GGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWN 642

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443
           +LL AC++ G+VEMA  A+ K+  +     G +VLLSN+YA+  RW+D+ +VR +MK + 
Sbjct: 643 SLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKG 702

Query: 444 VKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIG 503
           ++K PG S I++ G  H+F + D+SH + R+I   LDE+  +  + G+    S VL D+ 
Sbjct: 703 LRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVD 762

Query: 504 EEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
           E+EK   L  HSEKLA+AFGLIS+++ T+I++ KNLR+C  CH   K  SKVYNREII+R
Sbjct: 763 EQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFASKVYNREIILR 822

Query: 564 DRVRFHRFKDGACSCKDY 581
           D  RFH  + G CSC D+
Sbjct: 823 DNNRFHFIRQGKCSCSDF 840



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 172/334 (51%), Gaps = 24/334 (7%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N+++RG A S     A+L + +M+      D  T  F L  CA+       +QIH  ++
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLII 160

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           +  +  D  +  +L+  YA+ GE+  A+KVFDEM  R++ SW ++I G A+   A +AVD
Sbjct: 161 KMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVD 220

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF RM  +    PN VT++  ++AC  L   + G+K++++IR+  +++N ++ +A++DMY
Sbjct: 221 LFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMY 280

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            KC  +D A  +FD      +L   N M   +   G    AL +   M  +G++PD +S 
Sbjct: 281 MKCNAIDIAKRLFDEYGA-SNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISM 339

Query: 316 LAALCACN-----------HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
           L+A+ +C+           H  ++ +G   ++++ N           +++D+  +  R  
Sbjct: 340 LSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN-----------ALIDMYMKCHRQD 388

Query: 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            A  I   +S  T +V W +++      G+V+ A
Sbjct: 389 TAFRIFDRMSNKT-VVTWNSIVAGYIENGEVDAA 421


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 203/530 (38%), Positives = 306/530 (57%), Gaps = 22/530 (4%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNA-VLWYRQMLRGSHRSDALTCSFAL 115
           +L  A ALF ++       +NA+L G A +     A  ++Y+  L+     + L  ++  
Sbjct: 41  DLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQ 100

Query: 116 KA-CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK-VFDEMGVRD 173
                    LFE+                 +  TL+     +G  V  ++ +FD M  RD
Sbjct: 101 NGRIEDAKRLFESK----------------MDWTLVSWNCLMGGFVRKRRNLFDNMPQRD 144

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
             SW+A+IAG +Q   + EA+  F  M+ +   + N  +   AL+ C ++ A + G ++H
Sbjct: 145 SISWSAMIAGYSQNGCSEEALHFFVEMQRD-CERLNRSSFTCALSTCSNIAALELGRQLH 203

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
             + +        V NA++ MY KCG +D+A + F  I   K +V+WNTM+  +A HG G
Sbjct: 204 CRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEI-LEKDVVSWNTMIHGYARHGFG 262

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGS 352
             AL +FE M   G++PDD + ++ L AC+HAGLVD G   F SM  + G+   + HY  
Sbjct: 263 EEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTC 322

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412
           +VDLLGRAG+L+EA +++K++    D   W  LLGA +++G+ E+ E A++ + EM  +N
Sbjct: 323 MVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHN 382

Query: 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW 472
            G ++LLS LYAA  RW D G++R  M+N+ VKKVPG+S++EV   IH F   D SH   
Sbjct: 383 SGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHT 442

Query: 473 REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS 532
            +IY  L+E+  K+K+ GY + T+ V HD+ EEEK + L YHSEKLAVA+G++       
Sbjct: 443 DKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKLAVAYGILYIPAGRP 502

Query: 533 IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           I+V KNLR+C DCH+ IK ISK+  R II+RD  RFH F+ G+CSC+D+W
Sbjct: 503 IRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 124/257 (48%), Gaps = 16/257 (6%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D      +L  Y +  ++ +A+ +F+ M  RDI SWNA+++G AQ     EA ++F +M 
Sbjct: 25  DLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMP 84

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
           ++     N ++  G LAA    G  ++  ++     E ++D  +V  N ++      G +
Sbjct: 85  LK-----NGISWNGLLAAYVQNGRIEDAKRLF----ESKMDWTLVSWNCLMG-----GFV 130

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
            K   +FDN+  R S ++W+ M+  ++ +G    AL  F +M R   + +  S+  AL  
Sbjct: 131 RKRRNLFDNMPQRDS-ISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALST 189

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C++   ++ G +L   +   G +       +++ +  + G + EA D  + + +  D+V 
Sbjct: 190 CSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEI-LEKDVVS 248

Query: 382 WQTLLGACQLYGDVEMA 398
           W T++     +G  E A
Sbjct: 249 WNTMIHGYARHGFGEEA 265


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/501 (37%), Positives = 292/501 (58%), Gaps = 5/501 (0%)

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
           A S +   A   + +M+R S   +  + S  L+ACA V  L    QIH+ V++ G+ ++ 
Sbjct: 328 AQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESEL 387

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            +G  L+DVYAK   + ++ ++F  +   +  SWN +I G  Q   A +A+ +F+ M+  
Sbjct: 388 FVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAA 447

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
            V    +VT    L AC +  + K   +IH  I +   + + +VCN++ID YAKCG +  
Sbjct: 448 HVLS-TQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRD 506

Query: 264 AFEVFDNI-KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
           A +VF++I +C   +V+WN ++  +A+HG    ALELF +M ++  KP+DV+++A L  C
Sbjct: 507 ALKVFESIIQC--DVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVC 564

Query: 323 NHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
              GLV+ G+ LFNSM  +  +KP+M HY  +V LLGRAGRL +A   +  +      ++
Sbjct: 565 GSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMV 624

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W+ LL +C ++ +V + + ++ K++E+   +   +VLLSN+YAA    D V  +RK+M+N
Sbjct: 625 WRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRN 684

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
             VKK  G S++E+ G +H F      H   R I   L+ +  K    GY    + VLHD
Sbjct: 685 IGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHD 744

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           + EEEK   L  HSE+LA+A+GL  T     I++ KNLR C DCH V K+ISK+  REI+
Sbjct: 745 VDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIV 804

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRD  RFH F +G CSC DYW
Sbjct: 805 VRDINRFHHFDEGICSCGDYW 825



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 185/388 (47%), Gaps = 14/388 (3%)

Query: 7   LLQKCSSNG---AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           LLQ+C + G   A   +H + +Q      G  Q   F   + ++  YA   L  LA A  
Sbjct: 53  LLQRCIARGDARAGRAVHARVVQ----RGGVAQLDTF-CANVLLNLYA--KLGPLAAARR 105

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF  +   +   F  +++G A       A   +R++ R  H  +    +  LK    + A
Sbjct: 106 LFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDA 165

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
              T  IH+   + G   +A +G++L+D Y+  G +  A+ VFD +  +D  +W A+++ 
Sbjct: 166 PGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSC 225

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            ++ ++  +A++ F +M+M G  KPN   +   L A   L +   G  IH    +   D 
Sbjct: 226 YSENDIPEDALNTFSKMRMAGA-KPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDT 284

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
              V  A++DMYAKCG ++ A  VF+ I     ++ W+ ++  +A      +A E+F +M
Sbjct: 285 EPHVGGALLDMYAKCGYIEDARTVFEIIP-HDDVILWSFLISRYAQSYQNEQAFEMFLRM 343

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
            R+ V P++ S    L AC +   +D G ++ N +   G +  +    +++D+  +   +
Sbjct: 344 MRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNM 403

Query: 364 QEACDIVKSVSMGTDMVLWQTLL-GACQ 390
           + + +I +S+    + V W T++ G CQ
Sbjct: 404 ENSLEIFRSLRDANE-VSWNTIIVGYCQ 430



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 172/344 (50%), Gaps = 11/344 (3%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           +L+ +LQ C++   V+ + + Q   +L     ++S+LF V + +++ YA      +  + 
Sbjct: 354 SLSGVLQACAN---VAFLDLGQQIHNLVIKLGYESELF-VGNALMDVYA--KCRNMENSL 407

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +FR +   +   +N ++ G   S    +A+  +++M      S  +T S  L+ACA   
Sbjct: 408 EIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTA 467

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           ++  T+QIHS + +  F  D ++  +L+D YAK G I  A KVF+ +   D+ SWNA+I+
Sbjct: 468 SIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIIS 527

Query: 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI-HEYIREERL 241
           G A    A++A++LF RM      KPN+VT +  L+ CG  G   +G  + +    + R+
Sbjct: 528 GYALHGRATDALELFNRMNKSDT-KPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRI 586

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
             ++     ++ +  + G L+ A +   +I    S + W  ++ +  VH +   AL  F 
Sbjct: 587 KPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKN--VALGKFS 644

Query: 302 QMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
                 ++P D+ +Y+        AG++D    L  SM N GVK
Sbjct: 645 AEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVK 688


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 305/527 (57%), Gaps = 4/527 (0%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALK 116
           L  A  LF ++    +  + A++ G     +P  A++ Y  M R  + + +  T S A+ 
Sbjct: 169 LEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVA 228

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           A A +  +    +IH H++R G  +D +L ++L+D+Y K G I  A+ +FD++  +D+ S
Sbjct: 229 AAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVS 288

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           W ++I    + +   E   LF  + +    +PNE T  G L AC  L   + G ++H Y+
Sbjct: 289 WTSMIDRYFKSSRWREGFSLFSEL-IGSCERPNEYTFSGVLNACADLTTEELGRQVHGYM 347

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
                D      +++IDMY KCG ++ A  V D    +  LV+  +++  +A +G    A
Sbjct: 348 TRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCP-KPDLVSLTSLIGGYAQNGKPDEA 406

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVD 355
           L+ F+ + ++G KPD V+++  L AC HAGLV+ G+  F S+     +     HY  +VD
Sbjct: 407 LKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVD 466

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
           LL R+GR ++   ++  + M     LW ++LG C  YG++++AE A+++L ++   N   
Sbjct: 467 LLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVT 526

Query: 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
           +V ++N+YAA  +W++ G++RK M+   + K PG S+ E+    H F  +D SH  + +I
Sbjct: 527 YVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQI 586

Query: 476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
            E L E+  K+KE GY   TS VLHD+ +E+KE  L YHSEKLAVAF ++ST E T+I+V
Sbjct: 587 IEFLGELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKV 646

Query: 536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           FKNLR C DCH  IK ISK+  R+I +RD  RFH F++G CSC+DYW
Sbjct: 647 FKNLRSCVDCHSAIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 150/322 (46%), Gaps = 33/322 (10%)

Query: 98  QMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157
           Q+L  + +  A T    ++ C++  AL E  ++H H+   GF+   ++   +L +YAK G
Sbjct: 77  QLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCG 136

Query: 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF----------- 206
            +V A+KVFDEM  RD+ SWN ++ G A+  L  EA +LF  M     +           
Sbjct: 137 SLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVK 196

Query: 207 --------------------KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
                               KPN  TV  A+AA   +   + G +IH +I    LD + V
Sbjct: 197 KDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEV 256

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           + ++++DMY KCG +D+A  +FD I   K +V+W +M+  +           LF ++  +
Sbjct: 257 LWSSLMDMYGKCGCIDEARNIFDKI-IDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGS 315

Query: 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
             +P++ ++   L AC      + G ++   M   G  P      S++D+  + G ++ A
Sbjct: 316 CERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESA 375

Query: 367 CDIVKSVSMGTDMVLWQTLLGA 388
             +V       D+V   +L+G 
Sbjct: 376 RHVVDGCPK-PDLVSLTSLIGG 396


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 203/524 (38%), Positives = 309/524 (58%), Gaps = 7/524 (1%)

Query: 64   LFRQINAPSTNDFNAVLRGLAHSSKP-TNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            +F  ++A     +N+++  +A S  P T +V  +  M++     + +T    L A   + 
Sbjct: 541  IFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLS 600

Query: 123  ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM-GVRDIASWNALI 181
             L    QIHS +L+HG   D  +   L+  YAK G++ S +++F  M G RD  SWN++I
Sbjct: 601  VLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMI 660

Query: 182  AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
            +G        EA+D    M M      +  T    L AC  + A + G ++H +     L
Sbjct: 661  SGYIYNGHLQEAMDCVCLM-MHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHL 719

Query: 242  DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
            + +VVV +A++DMY+KCG +D A +VF ++  +K+  +WN+M+  +A HG G +ALE+FE
Sbjct: 720  ESDVVVESALVDMYSKCGRIDYASKVFHSMS-QKNEFSWNSMISGYARHGLGRKALEIFE 778

Query: 302  QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
            +M  +G  PD V++++ L AC+HAGLV+ G+  F  M + G+ P ++HY  V+DLLGRAG
Sbjct: 779  EMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIEHYSCVIDLLGRAG 838

Query: 362  RLQEACDIVKSVSMGTDMVLWQTLLGACQLY---GDVEMAEIASRKLVEMGSNNCGDFVL 418
             L +  + +K + M  + ++W+T+L ACQ       +++   ASR L+E+   N  ++VL
Sbjct: 839  ELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVL 898

Query: 419  LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
             S  +AA  RW+D  + R AMK   VKK  G S++ +   +H F   D+SH   +EIYEK
Sbjct: 899  SSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYEK 958

Query: 479  LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
            L+ ++ KI+  GY   T  VLHD+ EE KE  L YHSEKLAVAF L  +S    I++ KN
Sbjct: 959  LNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEKLAVAFVLTRSSSGGPIRIMKN 1018

Query: 539  LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            LR+C DCH   + IS++  R+II+RD +RFH FKDG CSC DYW
Sbjct: 1019 LRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 166/372 (44%), Gaps = 6/372 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           +++ AH+   G    K+  V + ++  YA      +  A  +F+ + A     +N ++  
Sbjct: 402 REVHAHVLRAGHIYRKI-AVSNGLVNMYA--KCGAIDKACRVFQLMEARDRISWNTIITA 458

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
           L  +     A++ Y  M + S           L +CA +  L    Q+H   ++ G   D
Sbjct: 459 LDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLD 518

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA-SEAVDLFKRMK 201
             +   L+ +Y + G +    ++F+ M   D+ SWN+++  +A      +E+V +F  M 
Sbjct: 519 TSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMM 578

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
             G+  PN+VT +  LAA   L   + G +IH  + +  +  +  V NA++  YAK G +
Sbjct: 579 KSGLV-PNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDV 637

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           D    +F  +  R+  ++WN+M+  +  +G    A++    M  +    D  ++   L A
Sbjct: 638 DSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNA 697

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C     ++ G+ +        ++ ++    ++VD+  + GR+  A  +  S+S   +   
Sbjct: 698 CASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFS- 756

Query: 382 WQTLLGACQLYG 393
           W +++     +G
Sbjct: 757 WNSMISGYARHG 768



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 117/254 (46%), Gaps = 17/254 (6%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
            +H  V++ G   D  L   L++ YAK   + +A++VFD M  R+  SW  LI+G     
Sbjct: 86  SLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSG 145

Query: 189 LASEAVDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEG--DKIHEYIREERLDMNV 245
           L  +A  LF+ M  EG   +P   T    L AC   G  + G   ++H  + +     N 
Sbjct: 146 LPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNT 205

Query: 246 VVCNAVIDMYAKC--GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE-- 301
            VCNA+I MY  C  G    A  VFD    R  L+TWN ++  +A  GD      LF   
Sbjct: 206 TVCNALISMYGSCSVGPPILAQRVFDTTPVR-DLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 302 QMGRAGV--KPDDVSYLAALCACNHA----GLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           Q   +G+  +P + ++ + + A   +    GL+D   +LF  +   G   ++    ++V 
Sbjct: 265 QYDDSGIELRPTEHTFGSLITATYLSSCSLGLLD---QLFVRVLKSGCSSDLYVGSALVS 321

Query: 356 LLGRAGRLQEACDI 369
              R G L EA DI
Sbjct: 322 AFARHGMLDEAKDI 335



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 173/384 (45%), Gaps = 27/384 (7%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH--RSDALTCSFAL 115
           L  A  +F  +   +   +  ++ G   S  P +A   +R MLR     R  + T    L
Sbjct: 116 LDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVL 175

Query: 116 KACARVLA--LFETLQIHSHVLRHGFLADALLGTTLLDVYAK--VGEIVSAKKVFDEMGV 171
           +AC       L   +Q+H  V +  F ++  +   L+ +Y    VG  + A++VFD   V
Sbjct: 176 RACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPV 235

Query: 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKME--GV-FKPNEVTVLGALAACGHLGAWKE 228
           RD+ +WNAL++  A+   A     LF+ M+ +  G+  +P E T  G+L    +L +   
Sbjct: 236 RDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHT-FGSLITATYLSSCSL 294

Query: 229 G--DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
           G  D++   + +     ++ V +A++  +A+ G+LD+A +++  +K R + VT N ++  
Sbjct: 295 GLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNA-VTLNGLIAG 353

Query: 287 FAVHGDGPRALELFEQMG---RAGVKPDDVSYLAALCACNHAGLVDDGVR----LFNSMA 339
                 G  A E+F  MG    A V  D  +Y+  L A       + G+R    +   + 
Sbjct: 354 LVKQQHGEAAAEIF--MGARDSAAVNVD--TYVVLLSAIAEFSTAEQGLRKGREVHAHVL 409

Query: 340 NCG-VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
             G +   +     +V++  + G + +AC + + +    D + W T++ A    G  E A
Sbjct: 410 RAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLME-ARDRISWNTIITALDQNGYCE-A 467

Query: 399 EIASRKLVEMGSNNCGDFVLLSNL 422
            + +  L+   S    +F  +S L
Sbjct: 468 AMMNYCLMRQNSIGPSNFAAISGL 491



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV 289
           + +H  + +  L  ++ + N +++ YAK   LD A  VFD +  R + V+W  ++    +
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNA-VSWTCLISGHVL 143

Query: 290 HGDGPRALELFEQMGR--AGVKPDDVSYLAALCACNHAG 326
            G    A  LF  M R   G +P   ++ + L AC  +G
Sbjct: 144 SGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSG 182


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 187/513 (36%), Positives = 300/513 (58%), Gaps = 9/513 (1%)

Query: 77  NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           N  +  L  +++   A+    +M R     +  T S  L  CA   A+ E +Q+H+  ++
Sbjct: 120 NTRIGALTQNAEDRKALKLLIRMQREVTPFNEFTISSVLCNCAFKCAILECMQLHAFSIK 179

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
               ++  + T LL VYAK   I  A ++F+ M  ++  +W++++AG  Q     EA+ L
Sbjct: 180 AAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDEALLL 239

Query: 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256
           F   ++ G F  +   +  A++AC  L    EG ++H    +     N+ V +++IDMYA
Sbjct: 240 FHNAQLMG-FDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLIDMYA 298

Query: 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316
           KCG + +A+ VF+     +S+V WN M+  FA H     A+ LFE+M + G  PDDV+Y+
Sbjct: 299 KCGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQRGFFPDDVTYV 358

Query: 317 AALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           + L AC+H GL ++G + F+ M     + P++ HY  ++D+LGRAG +Q+A D++  +S 
Sbjct: 359 SVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVQKAYDLIGRMSF 418

Query: 376 GTDMVLWQTLLG-------ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428
                +W ++ G       +C++YG++E AEIA++ L EM  NN G+ +LL+N+YAA ++
Sbjct: 419 NATSSMWGSVRGLSXLIKASCRIYGNIEFAEIAAKHLFEMEPNNAGNHILLANIYAANKK 478

Query: 429 WDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKE 488
            D+V R RK ++  DV+K  G S+IE+   IH F   +++H +  + Y KLD ++ ++K+
Sbjct: 479 SDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDNYAKLDNLVVELKK 538

Query: 489 YGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDV 548
             Y   T+  LHD+ E  K   L +HSEKLA+ FGL+       I++ KNLRIC DCH  
Sbjct: 539 LNYKVDTNNDLHDVEESRKHMLLGHHSEKLAITFGLVCLPTEIPIRIIKNLRICGDCHTF 598

Query: 549 IKLISKVYNREIIVRDRVRFHRFKDGACSCKDY 581
           +KL+SK  +REIIVRD  RFH FKDG CSC ++
Sbjct: 599 MKLVSKFASREIIVRDTNRFHHFKDGLCSCGEF 631



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 138/297 (46%), Gaps = 2/297 (0%)

Query: 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172
           + L+ CA+  +       H+ ++R G   D L  T L+++Y+K   + S +K  DEM V+
Sbjct: 55  YLLQLCAKTGSSMGGRACHAQIIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXDEMLVK 114

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
            +   N  I  L Q     +A+ L  RM+ E V   NE T+   L  C    A  E  ++
Sbjct: 115 SLILXNTRIGALTQNAEDRKALKLLIRMQRE-VTPFNEFTISSVLCNCAFKCAILECMQL 173

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H +  +  +D N  V  A++ +YAKC  +  A ++F+++   K+ VTW++M+  +  +G 
Sbjct: 174 HAFSIKAAIDSNCFVXTALLHVYAKCSSIKDASQMFESMP-EKNAVTWSSMMAGYVQNGF 232

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
              AL LF      G   D  +  +A+ AC     + +G ++       G   N+    S
Sbjct: 233 HDEALLLFHNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASS 292

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           ++D+  + G ++EA  + +       +VLW  ++     +   + A I   K+ + G
Sbjct: 293 LIDMYAKCGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQRG 349


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 196/527 (37%), Positives = 297/527 (56%), Gaps = 6/527 (1%)

Query: 57   ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
            EL  A ++F +++      + A++   A +         +R+M       D  T +  L 
Sbjct: 587  ELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLD 646

Query: 117  ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
             C     L     IH+ V   G  AD  +   LL++Y+  G+   A   F+ M  RD+ S
Sbjct: 647  TCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVS 706

Query: 177  WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
            WN + A  AQ  LA EAV LF++M++EGV KP+++T    L   G      +G   H   
Sbjct: 707  WNIMSAAYAQAGLAKEAVLLFRQMQLEGV-KPDKLTFSTTLNVSGGSALVSDGKLFHALA 765

Query: 237  REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
             E  LD +V V   ++ +YAKCG LD+A  +F    C  ++V  N ++ A A HG    A
Sbjct: 766  AESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRG-ACDWTVVLLNAIIGALAQHGFSEEA 824

Query: 297  LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVD 355
            +++F +M + GV+PD  + ++ + AC HAG+V++G   F +M    G+ P ++HY   VD
Sbjct: 825  VKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVD 884

Query: 356  LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
            LLGRAG+L+ A  I++ +    + ++W +LLG C+L GD E+ E  +++++E+  +N   
Sbjct: 885  LLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAA 944

Query: 416  FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
             V+LSN+Y A  +W D    RK M + +VK  PG S+ E+G  +H+F   D+SH K  EI
Sbjct: 945  HVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEI 1004

Query: 476  YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
            Y  LD++   ++  GY A       D+ +E KE AL YHSE++A+AFGLI+T   T++++
Sbjct: 1005 YVVLDKLELLMRRAGYEADKGL---DVEDELKEKALGYHSERIAIAFGLIATPPETTLKI 1061

Query: 536  FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             KNLR+C DCH   K IS V  REIIVRD +RFH F +G CSCKD W
Sbjct: 1062 VKNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 179/349 (51%), Gaps = 21/349 (6%)

Query: 58  LAYAHALFRQINAPSTN--DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           ++ A  +F+++  PS +   +N +L   A + +   A     +ML+G    DAL+ +  L
Sbjct: 489 ISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVL 548

Query: 116 KAC-----ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
            +C     A+VL +         +L  G+ + A L T L+ ++ +  E+  A+ VF+EM 
Sbjct: 549 SSCYCSQEAQVLRMC--------ILESGYRS-ACLETALISMHGRCRELEQARSVFNEMD 599

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
             D+ SW A+++  A+     E  +LF+RM++EGV  P++ T+   L  C        G 
Sbjct: 600 HGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVI-PDKFTLATTLDTCLASTTLGLGK 658

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            IH  + E  L+ ++ V NA+++MY+ CG   +A   F+ +K R  LV+WN M  A+A  
Sbjct: 659 VIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKAR-DLVSWNIMSAAYAQA 717

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKH 349
           G    A+ LF QM   GVKPD +++   L     + LV DG +LF+++ A  G+  ++  
Sbjct: 718 GLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHALAAESGLDSDVSV 776

Query: 350 YGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
              +V L  + G+L EA  + +     T +VL   ++GA   +G  E A
Sbjct: 777 ATGLVKLYAKCGKLDEAMSLFRGACDWT-VVLLNAIIGALAQHGFSEEA 824



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 186/378 (49%), Gaps = 24/378 (6%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSK-PTNAVLWYRQML 100
           V + +I  YA      L  A A+F  I       + A+    A   +   +A+  +R+ML
Sbjct: 168 VGNAMINMYA--KCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREML 225

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160
                 + +T   AL AC    +L +   +HS +       D L    L+++Y K G+  
Sbjct: 226 LQPLAPNVITFITALGACT---SLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWE 282

Query: 161 SAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT---VL 214
            A  VF  M  R   D+ SWNA+I+   +     +A+ +F+R+++EG+ +PN VT   +L
Sbjct: 283 GAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGM-RPNSVTLITIL 341

Query: 215 GALAACG-HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
            ALAA G   GA +     H  I E     +VV+ NA+I MYAKCG    A+ VF  I+ 
Sbjct: 342 NALAASGVDFGAAR---GFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRW 398

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
           +  +++WNTM+ A        + +  F  M  AG+ P+ VS++A L AC+++  +D G R
Sbjct: 399 KCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFG-R 457

Query: 334 LFNSMANCGVKPNMKHYGS--VVDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQ 390
             +S+     +  ++   +  +V + G+ G + EA  + K + + +  +V W  +LGA  
Sbjct: 458 KIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGA-- 515

Query: 391 LYGDVEMAEIASRKLVEM 408
            Y   + ++ A   L+EM
Sbjct: 516 -YAQNDRSKEAFGALMEM 532



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 154/323 (47%), Gaps = 19/323 (5%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L++C     L +    H  +   G      LG  L+++Y + G +  A  +F +M  R++
Sbjct: 32  LQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNV 91

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SW ALI+  AQ    + A  LF+ M +E    PN  T++  L AC +      G  IH 
Sbjct: 92  VSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHA 151

Query: 235 YIREERLD----MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            I E  L+       +V NA+I+MYAKCG L+ A  VF  I   K +V+W  M  A+A  
Sbjct: 152 MIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIP-EKDVVSWTAMAGAYAQE 210

Query: 291 GDG-PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM--ANCGVKPNM 347
               P AL +F +M    + P+ ++++ AL AC     + DG  L + +  A+ G  P  
Sbjct: 211 RRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWLHSLLHEASLGFDPLA 267

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVS--MGTDMVLWQTLLGA---CQLYGDVEMAEIAS 402
            +  +++++ G+ G  + A  + K+++     D+V W  ++ A      +GD  MA    
Sbjct: 268 SN--ALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDA-MAIFRR 324

Query: 403 RKLVEMGSNNCGDFVLLSNLYAA 425
            +L  M  N+     +L+ L A+
Sbjct: 325 LRLEGMRPNSVTLITILNALAAS 347


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 195/552 (35%), Positives = 314/552 (56%), Gaps = 11/552 (1%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAH---ALFRQINAPSTNDFNAVLRGLAHSSKPTN 91
           F+S L+  R   I    ++  N+L YA     LF  +       +N+++ G +      +
Sbjct: 66  FKSLLY--RDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLH-MS 122

Query: 92  AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD 151
              +Y      S + + +T    + AC+   AL     IH   ++ G   +  +  +L++
Sbjct: 123 LTAFYTMKFEMSVKPNEVTILSMISACSG--ALDAGKYIHGFGIKVGGTLEVKVANSLIN 180

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
           +Y K G++ SA ++F+ +   +  SWN++IA       A E +D F +M+  G+ + +E 
Sbjct: 181 MYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGI-EQDEG 239

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T+L  L AC HLG  K  + IH  +        + +  A++D YAK G L  ++ VF  +
Sbjct: 240 TILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEV 299

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
                 V W  M+  +A HG G  A++LFE M   G++PD V++   L AC+H+GLV++G
Sbjct: 300 GFADR-VAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEG 358

Query: 332 VRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
              FN M+   G++P + HY  +VDLLGR G L +A ++++++ M  +  +W  LLGAC+
Sbjct: 359 KSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACR 418

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
           ++G++E+ +  +  L+ M   +  ++++LSN+Y+A   W D  +VR  +K R +K+ PG+
Sbjct: 419 VHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGY 478

Query: 451 SYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           S IE G   H FF  D+SH +  +IY KL+E++ KI++ GY++ T  VL D+ EE KE+ 
Sbjct: 479 SSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDM 538

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           +  HSEKLA+AFGL+ + E  ++ + KNLRIC DCH   KLIS +  R II+RD  RFH 
Sbjct: 539 INKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHH 598

Query: 571 FKDGACSCKDYW 582
           F DG CSC DYW
Sbjct: 599 FSDGFCSCADYW 610



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 6/265 (2%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           +IH+ V +     D  +G  L+  Y K+G    A K+FD+M  +D+ SWN+LI+G ++  
Sbjct: 60  EIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR-- 117

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
               ++  F  MK E   KPNEVT+L  ++AC   GA   G  IH +  +    + V V 
Sbjct: 118 CLHMSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIKVGGTLEVKVA 175

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N++I+MY K G L  A  +F+ I    + V+WN+++ A   +G     ++ F +M R G+
Sbjct: 176 NSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGI 234

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           + D+ + LA L AC H G+      +   M   G    +    +++D   + GRL  +  
Sbjct: 235 EQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYG 294

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYG 393
           +   V    D V W  +L     +G
Sbjct: 295 VFTEVGFA-DRVAWTAMLAGYAAHG 318


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/563 (36%), Positives = 323/563 (57%), Gaps = 9/563 (1%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRG 82
           + +Q  +  TG  +  +  V++ ++  Y    L     A ++F +++      ++A++  
Sbjct: 96  RSIQLAILGTGIEEESI--VQTALVSLYG--KLGHCTDAASVFLRMSHRDVVAWSAMVAA 151

Query: 83  LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD 142
            A +  P  A+  +RQM       + +T    L ACA +  L     +H  V   G  + 
Sbjct: 152 YARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSG 211

Query: 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202
            ++GT L+++Y K G I +A + F ++  +++ +W+A+ A  A+ +   +A+ +  RM +
Sbjct: 212 VVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDL 271

Query: 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR--EERLDMNVVVCNAVIDMYAKCGL 260
           EG+  PN  T +  L AC  + A K+G +IHE I      L+ +V V  A+++MY+KCG 
Sbjct: 272 EGL-APNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGN 330

Query: 261 LDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           L  A  +FD I     LV WN+++   A HG   +ALELFE+M   G++P  +++ + L 
Sbjct: 331 LALAGNMFDKI-AHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLF 389

Query: 321 ACNHAGLVDDGVRLFNS-MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
           AC+HAG++D G + F S + + G+ P  +H+G +VDLLGRAG + ++ D++  +      
Sbjct: 390 ACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHP 449

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439
           V W   LGAC+ Y +++ A  A+  L ++       +VLLSN+YA   RW DV R+R+AM
Sbjct: 450 VAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAM 509

Query: 440 KNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499
           +     K  G S+IEV   +H+F + D  H +  EI+ +L  +   +K  GY   T  VL
Sbjct: 510 QLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVL 569

Query: 500 HDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559
           HD+ +E KE  + YHSEKLA+AF L++T E + I+V KNLR+C DCH   K ISK+ NRE
Sbjct: 570 HDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNRE 629

Query: 560 IIVRDRVRFHRFKDGACSCKDYW 582
           I+VRD  RFHRF++GACSC DYW
Sbjct: 630 IVVRDCNRFHRFQNGACSCGDYW 652



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 179/352 (50%), Gaps = 10/352 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC-- 118
           A A+F  I + +   +  +L   A +       L++R ML        +  S  L AC  
Sbjct: 29  ALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTD 88

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           AR + +  ++Q+   +L  G   ++++ T L+ +Y K+G    A  VF  M  RD+ +W+
Sbjct: 89  AREITIGRSIQLA--ILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWS 146

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           A++A  A+     EA+ LF++M ++GV  PN+VT++  L AC  LG  + G  +H+ +  
Sbjct: 147 AMVAAYARNGHPREALGLFRQMDLDGV-APNKVTLVSGLDACASLGDLRSGALMHQRVEA 205

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           + +   VVV  A++++Y KCG ++ A E F  I   K++V W+ +  A+A +     A+ 
Sbjct: 206 QGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VEKNVVAWSAISAAYARNDRNRDAIR 264

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM--ANCGVKPNMKHYGSVVDL 356
           +  +M   G+ P+  ++++ L AC     +  G R+   +     G++ ++    ++V++
Sbjct: 265 VLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNM 324

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA-EIASRKLVE 407
             + G L  A ++   ++   D+VLW +L+     +G  E A E+  R  +E
Sbjct: 325 YSKCGNLALAGNMFDKIAH-LDLVLWNSLIATNAQHGQTEKALELFERMRLE 375



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 3/251 (1%)

Query: 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF 197
           G++ +  L   L+D+Y K      A  VF  +  +++ SW  ++A  A+          F
Sbjct: 5   GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFF 64

Query: 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257
           + M ++G+  P EV +   L+AC        G  I   I    ++   +V  A++ +Y K
Sbjct: 65  RGMLLQGI-NPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGK 123

Query: 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317
            G    A  VF  +  R  +V W+ MV A+A +G    AL LF QM   GV P+ V+ ++
Sbjct: 124 LGHCTDAASVFLRMSHR-DVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 182

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            L AC   G +  G  +   +   G++  +    ++V+L G+ GR++ A +    + +  
Sbjct: 183 GLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VEK 241

Query: 378 DMVLWQTLLGA 388
           ++V W  +  A
Sbjct: 242 NVVAWSAISAA 252


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/543 (35%), Positives = 318/543 (58%), Gaps = 6/543 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           VR+ +I+ YA     ++  A  +F  +    T  +N+++ G   S     A+  ++ M+ 
Sbjct: 344 VRNILIDVYA--KCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMI 401

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              ++D +T    +    R+  L     +HS+ ++ G   D  +   L+D+YAK GE+  
Sbjct: 402 MEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGD 461

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           + K+F  MG  D  +WN +I+   +    +  + +  +M+   V  P+  T L  L  C 
Sbjct: 462 SLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVV-PDMATFLVTLPMCA 520

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L A + G +IH  +     +  + + NA+I+MY+KCG L+ +  VF+ +  R+ +VTW 
Sbjct: 521 SLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMS-RRDVVTWT 579

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-AN 340
            M+ A+ ++G+G +ALE F  M ++G+ PD V ++A + AC+H+GLVD+G+  F  M  +
Sbjct: 580 GMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTH 639

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + P ++HY  VVDLL R+ ++ +A + ++++ +  D  +W ++L AC+  GD+E AE 
Sbjct: 640 YKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAER 699

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
            SR+++E+  ++ G  +L SN YAA  +WD V  +RK++K++ + K PG+S+IEVG  +H
Sbjct: 700 VSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVH 759

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI-GEEEKENALCYHSEKLA 519
            F + D S  +   IY+ L+ +   + + GY      V  ++  EEEK   +C HSE+LA
Sbjct: 760 VFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLA 819

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +AFGL++T   T +QV KNLR+C DCH+V KLISK+  REI+VRD  RFH FKDG CSCK
Sbjct: 820 IAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCK 879

Query: 580 DYW 582
           D W
Sbjct: 880 DRW 882



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 175/339 (51%), Gaps = 6/339 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F +++   +  +N ++ G         +V  + + L    + D LT S  L+AC  
Sbjct: 261 ARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENL-DQFKPDLLTVSSVLRACGH 319

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L     I++++L+ GF+ ++ +   L+DVYAK G++++A+ VF+ M  +D  SWN++
Sbjct: 320 LRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSI 379

Query: 181 IAGLAQGNLASEAVDLFKRMK-MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           I+G  Q     EA+ LFK M  ME   + + +T L  ++    L   K G  +H    + 
Sbjct: 380 ISGYIQSGDLMEAMKLFKMMMIMEE--QADHITYLMLISVSTRLADLKFGKGLHSNGIKS 437

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            + +++ V NA+IDMYAKCG +  + ++F ++    + VTWNT++ A    GD    L++
Sbjct: 438 GICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDT-VTWNTVISACVRFGDFATGLQV 496

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
             QM ++ V PD  ++L  L  C        G  +   +   G +  ++   +++++  +
Sbjct: 497 TTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSK 556

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
            G L+ +  + + +S   D+V W  ++ A  +YG+ E A
Sbjct: 557 CGCLENSSRVFERMSR-RDVVTWTGMIYAYGMYGEGEKA 594



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 187/383 (48%), Gaps = 23/383 (6%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF--NA 78
            ++++ A + + G   S  F    K+I+ Y  S   E A + ++FR++ +P+ N +  N+
Sbjct: 22  ELRRIHALVISLGLDSSDFF--SGKLIDKY--SHFREPASSLSVFRRV-SPAKNVYLWNS 76

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           ++R  + +     A+ +Y ++       D  T    +KACA +        ++  +L  G
Sbjct: 77  IIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMG 136

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
           F +D  +G  L+D+Y+++G +  A++VFDEM VRD+ SWN+LI+G +      EA++++ 
Sbjct: 137 FESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYH 196

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            +K   +  P+  TV   L A G+L   K+G  +H +  +  ++  VVV N ++ MY K 
Sbjct: 197 ELKNSWIV-PDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKF 255

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV------KPDD 312
                A  VFD +  R S V++NTM+  +         LE+ E+  R  +      KPD 
Sbjct: 256 RRPTDARRVFDEMDVRDS-VSYNTMICGYL-------KLEMVEESVRMFLENLDQFKPDL 307

Query: 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS 372
           ++  + L AC H   +     ++N M   G          ++D+  + G +  A D+  S
Sbjct: 308 LTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNS 367

Query: 373 VSMGTDMVLWQTLLGACQLYGDV 395
           +    D V W +++      GD+
Sbjct: 368 MEC-KDTVSWNSIISGYIQSGDL 389



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 109 LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE 168
           ++  F  +A +    L E  +IH+ V+  G  +       L+D Y+   E  S+  VF  
Sbjct: 5   VSSPFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRR 64

Query: 169 MG-VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227
           +   +++  WN++I   ++  L  EA++ + +++ E    P++ T    + AC  L   +
Sbjct: 65  VSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLR-ESKVSPDKYTFPSVIKACAGLFDAE 123

Query: 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAF 287
            GD ++E I +   + ++ V NA++DMY++ GLL +A +VFD +  R  LV+WN+++  +
Sbjct: 124 MGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVR-DLVSWNSLISGY 182

Query: 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
           + HG    ALE++ ++  + + PD  +  + L A  +  +V  G
Sbjct: 183 SSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQG 226


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 328/549 (59%), Gaps = 13/549 (2%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V +  I+ Y  S    +  A  +F ++   +   +NA++ G  H      +++ +++M  
Sbjct: 142 VGNATIDMY--SKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQG 199

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA--LLGTTLLDVYAKVGEI 159
                D  T +  LKAC  + A+    QIH+ ++  GF      ++ + ++D+YAK G +
Sbjct: 200 QGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYL 259

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQ-GNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
             A+KVFD +  +++ SW+ALI G AQ GNL  EA+DLF++++ E V   +   +   + 
Sbjct: 260 FEAQKVFDRIEQKNLISWSALIQGFAQEGNLL-EAMDLFRQLR-ESVSNVDGFVLSIMMG 317

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
               L   ++G ++H YI +    +++ V N++IDMY KCGL ++A  +F  ++ R ++V
Sbjct: 318 VFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVR-NVV 376

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W  M+  +  HG G +A+ LF +M   G++ D+V+YLA L AC+H+GL+ +    F+ +
Sbjct: 377 SWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRL 436

Query: 339 ANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
            N   +KPN++HY  +VD+LGRAG+L+EA ++++++ +  +  +WQTLL AC+++G++E+
Sbjct: 437 CNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEI 496

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
                  L  M ++N  ++V++SN+YA    W +  RVRK +K + +KK  G S++E+  
Sbjct: 497 GREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINK 556

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLHDIGEEEKENALCYHSE 516
            IH F+  D +H    +I+E L E+  ++K E GYA G    LHD+ EE KE  L  HSE
Sbjct: 557 EIHFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSE 616

Query: 517 KLAVAFGLIS---TSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKD 573
           KLA+   L+      +   I+VFKNLR+C DCH+ IK +SK+  +  +VRD  RFHRF+D
Sbjct: 617 KLAIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFED 676

Query: 574 GACSCKDYW 582
           G CSC DYW
Sbjct: 677 GLCSCGDYW 685



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 191/385 (49%), Gaps = 11/385 (2%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           L  LL+ CS NG       + LQ H             + + +I+ Y      +LA +  
Sbjct: 7   LAKLLRNCSKNGLFD----QGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACS-- 60

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++   +   + A++ G         ++    +M     + +  T S +LKAC  +  
Sbjct: 61  VFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGV 120

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           +   +QIH   ++ GF   +++G   +D+Y+K G I  A++VF++M  R++ SWNA+IAG
Sbjct: 121 VENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAG 180

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI--REERL 241
                   +++ LF+RM+ +G   P+E T    L ACG LGA + G +IH  +  R   +
Sbjct: 181 HTHEGNGRKSLVLFQRMQGQGEV-PDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPI 239

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
            +  ++ +A++D+YAKCG L +A +VFD I+ +K+L++W+ ++  FA  G+   A++LF 
Sbjct: 240 SIRNIIASAIVDLYAKCGYLFEAQKVFDRIE-QKNLISWSALIQGFAQEGNLLEAMDLFR 298

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           Q+  +    D       +       LV+ G ++   +       ++    S++D+  + G
Sbjct: 299 QLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCG 358

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLL 386
             +EA  +   + +  ++V W  ++
Sbjct: 359 LTEEAERLFSEMQV-RNVVSWTVMI 382


>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
 gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/422 (42%), Positives = 270/422 (63%), Gaps = 6/422 (1%)

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           AK VF++M  RD+ +WN +I G  +     EA+ LF+ M    V +P++ T    +  C 
Sbjct: 95  AKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNV-EPDKYTFASVINGCA 153

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            LGA K    +HE + E+R+++N ++ +A+IDMY+KCG +  A E+FD ++ R ++  WN
Sbjct: 154 KLGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQ-RNNVCIWN 212

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-AN 340
            M+   AVHG    A+++F +M    V PD +++L  L AC+H GLV +G + F+ M + 
Sbjct: 213 AMISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSR 272

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             V+P+++HYG++VDLLGRAG L+EA  ++KS+ M  D+V+W+ LLGAC+ Y   E+ E 
Sbjct: 273 YSVQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALLGACRTYKKPELGEA 332

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A   +  + S   GD+VLLSN+Y + +RWD    V + MK + V KV G S  E  G +H
Sbjct: 333 AMANISRLRS---GDYVLLSNIYCSQKRWDTAQGVWEMMKKKGVHKVRGKSCFEWAGFLH 389

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F   D+SH +   IY+ L+ ++ + K  GY   T  V  D+ EEEKE  L +HSEKLA+
Sbjct: 390 PFKAGDRSHPETEAIYKMLEGLIQRTKLAGYVPTTDLVTMDVSEEEKEGNLYHHSEKLAL 449

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           A+G++ T+    +++ KNLRIC DCH  IK++S++ +R IIVRDR+RFHRF++G CSC D
Sbjct: 450 AYGILKTTSGAEVRISKNLRICYDCHSWIKIVSRLLSRVIIVRDRIRFHRFENGLCSCGD 509

Query: 581 YW 582
           YW
Sbjct: 510 YW 511



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 123/227 (54%), Gaps = 2/227 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++ A     +N ++ G    ++   A+  +R M + +   D  T +  +  CA+
Sbjct: 95  AKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCAK 154

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL     +H  ++      + +L + L+D+Y+K G+I +AK++FD +   ++  WNA+
Sbjct: 155 LGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAM 214

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE- 239
           I+GLA   LA +A+ +F +M++E V  P+ +T LG L AC H G  KEG K  + +R   
Sbjct: 215 ISGLAVHGLALDAIKVFTKMEVENVL-PDAITFLGILTACSHCGLVKEGRKYFDLMRSRY 273

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
            +  ++    A++D+  + GLL++AF +  ++     +V W  ++ A
Sbjct: 274 SVQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALLGA 320


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 206/600 (34%), Positives = 322/600 (53%), Gaps = 69/600 (11%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           A S   E + A  +F +    +   FN ++R   +++    A+  ++ ML  +   D  T
Sbjct: 80  AYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYT 139

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
               LKAC+ +  L   LQ+H  +++ G   +  +G  L+ +Y K G +  A+KV D+M 
Sbjct: 140 FPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMP 199

Query: 171 VRDIASWNALIAGLAQ-----------------------GNLASEAV------------- 194
            RD+ SWN+++AG AQ                       G +AS +              
Sbjct: 200 YRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYI 259

Query: 195 -DLFKRMKMEGVFK-------------PNE-VTVLGALAACG----------------HL 223
            ++F+RM  + +               PNE V++   +  CG                 L
Sbjct: 260 HNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDL 319

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
            A   G ++H+YI +  L  N+++ NA++DMYAKCG L++A +VFD ++ R  +V+W +M
Sbjct: 320 SALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLR-DVVSWTSM 378

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCG 342
           + A+   G G  A+ LF +M  +G  PD +++++ L AC+H GL+D G   F  M    G
Sbjct: 379 MSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYG 438

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           + P ++H+  +VDL GRAG ++EA   +K + M  +  +W  LL AC+++  +++  +A+
Sbjct: 439 IVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAA 498

Query: 403 RKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKF 462
             L ++     G +VLLSN+YA    W DV  VR AMK   +KKVPG S +E+ G +H F
Sbjct: 499 DLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTF 558

Query: 463 FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
              D+ H + + IY +LD ++ K+KE GY   T   LHD+  E+KE  L  HSEKLA+ F
Sbjct: 559 LAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVF 618

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +++T + T I++ KNLR+C DCH  IKLISK+ +R IIVRD  RFH F +G CSC DYW
Sbjct: 619 AILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 208/578 (35%), Positives = 331/578 (57%), Gaps = 9/578 (1%)

Query: 6    ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            ++L+ C+S GA+     +Q+  H+  TG FQ  ++ V S +I+ YA     +LA A  + 
Sbjct: 468  SILRTCTSLGAL--YLGEQIHTHVIKTG-FQLNVY-VCSVLIDMYA--KYGQLALALRIL 521

Query: 66   RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            R++       + A++ G       + A+  + +M     + D +  + A+ ACA + AL 
Sbjct: 522  RRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALR 581

Query: 126  ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
            +  QIH+     GF AD  +   L+ +YA+ G I  A   F+++G ++  SWN+L++GLA
Sbjct: 582  QGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLA 641

Query: 186  QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
            Q     EA+ +F RM +    + N  T   A++A   L   K+G +IH  + +   D   
Sbjct: 642  QSGYFEEALQVFVRM-LRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSER 700

Query: 246  VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
             V N++I +YAK G +  A+  F+++   +++++WN M+  ++ HG G  AL LFE+M  
Sbjct: 701  EVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQHGCGMEALRLFEEMKV 759

Query: 306  AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQ 364
             G+ P+ V+++  L AC+H GLV +G+  F SM     + P  +HY  VVDLLGRAG+L 
Sbjct: 760  CGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLD 819

Query: 365  EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
             A + +K + +  D ++W+TLL AC ++ ++E+ E A+  L+E+   +   +VL+SN+YA
Sbjct: 820  RAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYA 879

Query: 425  AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
               +W      RK MK+R VKK PG S+IEV   +H F+  DK H    +IYE +  +  
Sbjct: 880  VSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNR 939

Query: 485  KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
            +  E GY   +  +L++  + +K+     HSEKLA+AFGL+S      I+V KNLR+C D
Sbjct: 940  RTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCND 999

Query: 545  CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            CH+ IK +SK+ NR IIVRD  RFH F  G CSCKD+W
Sbjct: 1000 CHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 186/364 (51%), Gaps = 6/364 (1%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F S+ + V + ++  Y+ S   +L  A  +F  +N+     +N+++ GL        A+ 
Sbjct: 292 FHSETY-VCNGLVALYSRS--RKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALE 348

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
            + +M R   + D +T +  L ACA V AL + +Q+HSH ++ G  AD +L  +LLD+Y+
Sbjct: 349 LFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYS 408

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K  ++ +A K F      +I  WN ++    Q +  S++ ++F++M+MEG+  PN+ T  
Sbjct: 409 KCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMI-PNQFTYP 467

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L  C  LGA   G++IH ++ +    +NV VC+ +IDMYAK G L  A  +   +   
Sbjct: 468 SILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-E 526

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
             +V+W  M+  +  H     AL+LFE+M   G++ D++ + +A+ AC     +  G ++
Sbjct: 527 DDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQI 586

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
                  G   ++    +++ L  R GR+QEA    + +    + + W +L+      G 
Sbjct: 587 HAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG-DKNNISWNSLVSGLAQSGY 645

Query: 395 VEMA 398
            E A
Sbjct: 646 FEEA 649



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 155/302 (51%), Gaps = 7/302 (2%)

Query: 96  YRQMLRGSHRSDALTCSFALKACARVLALFETL-QIHSHVLRHGFLADALLGTTLLDVYA 154
           +R+ML      +  T +  LKAC      F  + Q+HS    +GF +  L+   L+D+Y+
Sbjct: 147 FRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYS 206

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G I SAKKVF+ + ++DI +W A+I+GL+Q  L  EA+ LF  M    +F P    + 
Sbjct: 207 KNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIF-PTPYVLS 265

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L+A   +  ++ G+++H  + +        VCN ++ +Y++   L  A  +F  +  R
Sbjct: 266 SVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSR 325

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
              V++N+++      G   RALELF +M R  +KPD ++  + L AC   G +  G++L
Sbjct: 326 DG-VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQL 384

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
            +     G+  ++   GS++DL  +   ++ A     +     ++VLW  +L A   YG 
Sbjct: 385 HSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTET-ENIVLWNVMLVA---YGQ 440

Query: 395 VE 396
           ++
Sbjct: 441 LD 442



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 195/383 (50%), Gaps = 15/383 (3%)

Query: 10  KCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQIN 69
           K    G ++  ++KQ+ +     G   S L  V + +I+ Y+ +   E   A  +F  I 
Sbjct: 167 KACVGGDIAFNYVKQVHSRTFYYGFDSSPL--VANLLIDLYSKNGYIE--SAKKVFNCIC 222

Query: 70  APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA---CARVLALFE 126
                 + A++ GL+ +     A+L +  M    H S+     + L +    +  + LFE
Sbjct: 223 MKDIVTWVAMISGLSQNGLEEEAILLFCDM----HASEIFPTPYVLSSVLSASTKIQLFE 278

Query: 127 T-LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              Q+H  V++ GF ++  +   L+ +Y++  +++SA+++F  M  RD  S+N+LI+GL 
Sbjct: 279 LGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLV 338

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q   +  A++LF +M+ +   KP+ +TV   L+AC  +GA  +G ++H +  +  +  ++
Sbjct: 339 QQGFSDRALELFTKMQRD-CLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADI 397

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           ++  +++D+Y+KC  ++ A + F   +  +++V WN M++A+    +   + E+F QM  
Sbjct: 398 ILEGSLLDLYSKCADVETAHKFFLTTET-ENIVLWNVMLVAYGQLDNLSDSFEIFRQMQM 456

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            G+ P+  +Y + L  C   G +  G ++   +   G + N+     ++D+  + G+L  
Sbjct: 457 EGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLAL 516

Query: 366 ACDIVKSVSMGTDMVLWQTLLGA 388
           A  I++ +    D+V W  ++  
Sbjct: 517 ALRILRRLP-EDDVVSWTAMIAG 538



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 134/285 (47%), Gaps = 4/285 (1%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           RS+     + L+ C    +LFET+++H  + + GF  + LL  +L+D Y + G+   A K
Sbjct: 55  RSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVK 114

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC-GHL 223
           VFDE   R + SWN +I          +   LF+RM  EG+  PN  T  G L AC G  
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGI-TPNGYTFAGVLKACVGGD 173

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
            A+    ++H        D + +V N +ID+Y+K G ++ A +VF+ I C K +VTW  M
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCI-CMKDIVTWVAM 232

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +   + +G    A+ LF  M  + + P      + L A     L + G +L   +   G 
Sbjct: 233 ISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGF 292

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
                    +V L  R+ +L  A  I  +++   D V + +L+  
Sbjct: 293 HSETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSLISG 336


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 202/523 (38%), Positives = 312/523 (59%), Gaps = 7/523 (1%)

Query: 64  LFRQINAPSTNDFNAVLRGLA-HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           +FR +       +N ++     HS  P    L +   L G  ++D ++   AL  CA   
Sbjct: 360 VFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGV-KADKISFVNALPLCAASE 418

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIA 182
           AL +   IHS ++  G  AD +L   +LD+Y        A +VF  M  RD  SWNA+I 
Sbjct: 419 ALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKARDQVSWNAMIT 478

Query: 183 GLA-QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
             A Q  L+SEA+ LF++M++ G F P+ ++ + AL+AC    +  EG  +H+ IRE  L
Sbjct: 479 AYAAQPRLSSEALLLFQQMQLHG-FMPDVISFVAALSACAAQASLAEGKLLHDRIRETGL 537

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + N+ V NAV++MYAK G L  A ++F  +     +++WN M+ AFA HG   + L  F 
Sbjct: 538 ESNMTVANAVLNMYAKSGSLVLARKMFGKMPL-PDVISWNGMISAFAQHGHADQVLRFFR 596

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPNMKHYGSVVDLLGR 359
           +M   G  P+DV++++ + AC+H GLV DGV+LF S+ +    + P  +HY  +VDL+ R
Sbjct: 597 RMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIAR 656

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG+L  A   + +  +  D V+  T+LGA +++ DVE A  ++  L+E+  +    +V+L
Sbjct: 657 AGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYVVL 716

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SNLY    + D+  ++R+ M  ++++K P FS I V   +H+FFT D ++ +  EI E+L
Sbjct: 717 SNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILEEL 776

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           + +  ++ + GY   T+ +LHD+G+E+K+  L YHSEKLA+AFGLIST+  TS+++ KNL
Sbjct: 777 ERLSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAPGTSLRIIKNL 836

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           R+C DCH   K ISK+  REI+VRD  RFH F +G CSC DYW
Sbjct: 837 RVCGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 155/307 (50%), Gaps = 10/307 (3%)

Query: 91  NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150
            A+  ++ ML    + D + C   L AC+    L E   IH  +    F      G  L+
Sbjct: 286 EALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALI 345

Query: 151 DVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE 210
           ++Y K G +  A +VF  M  RD+ SWN +IA   Q +   EA+ L   M+++GV K ++
Sbjct: 346 NMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGV-KADK 404

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
           ++ + AL  C    A  +G  IH +I E  +  +V++ NA++DMY  C   D A  VF  
Sbjct: 405 ISFVNALPLCAASEALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRA 464

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPR----ALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +K R   V+WN M+ A+A     PR    AL LF+QM   G  PD +S++AAL AC    
Sbjct: 465 MKARDQ-VSWNAMITAYAAQ---PRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQA 520

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            + +G  L + +   G++ NM    +V+++  ++G L  A  +   + +  D++ W  ++
Sbjct: 521 SLAEGKLLHDRIRETGLESNMTVANAVLNMYAKSGSLVLARKMFGKMPL-PDVISWNGMI 579

Query: 387 GACQLYG 393
            A   +G
Sbjct: 580 SAFAQHG 586



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 135/277 (48%), Gaps = 7/277 (2%)

Query: 115 LKACARVLALFET-LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           L AC+    L E   +IH  +      +D  + TTLL +Y K   +  A+KVFD +  + 
Sbjct: 106 LGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKR 165

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           +  WNA+I   AQ +   +A+ +F  M +EGV K   +T +G L AC  L   +    + 
Sbjct: 166 VVEWNAMITAYAQQDHHEQAIQVFYAMLLEGV-KAERITFIGVLDACSKLKDLEVAKLVK 224

Query: 234 EYIREERLD--MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
             + E   D   +     A+++ Y  CG L++AF  F   + R  L+    M+  +    
Sbjct: 225 LCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFS--RHRLELILATAMITQYTQRE 282

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351
               ALELF+ M   GVK D ++ +A L AC+    +++G  +   M       ++    
Sbjct: 283 RWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGN 342

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +++++ G+ G L+EA ++ +S+    D++ W T++ A
Sbjct: 343 ALINMYGKCGSLEEAVEVFRSMQH-RDVISWNTIIAA 378



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 5/197 (2%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           ++H+ + +        +G  L+ +Y   G ++ AK  FD M V+D  +W  LI    Q  
Sbjct: 19  EVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARLIRAHGQIG 78

Query: 189 LASEAVDLFKRMKMEGVFKPNE--VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
            + +A+ LF+ M++EGV   N   V VLGA +A   L   +EG +IH  +R   ++ +  
Sbjct: 79  DSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPEL--LEEGRRIHGVLRGTAMESDHY 136

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
           V   ++ MY KC  ++ A +VFD I+  K +V WN M+ A+A      +A+++F  M   
Sbjct: 137 VSTTLLHMYGKCSSVEDARKVFDGIR-HKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLE 195

Query: 307 GVKPDDVSYLAALCACN 323
           GVK + ++++  L AC+
Sbjct: 196 GVKAERITFIGVLDACS 212



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 3/161 (1%)

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G ++H  I +  +D    + + ++ MY  CG L  A   FD +  + +L TW  ++ A  
Sbjct: 17  GKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDAL-TWARLIRAHG 75

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN-HAGLVDDGVRLFNSMANCGVKPNM 347
             GD  +AL LF  M   GV P + +++A L AC+    L+++G R+   +    ++ + 
Sbjct: 76  QIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDH 135

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
               +++ + G+   +++A  +   +     +V W  ++ A
Sbjct: 136 YVSTTLLHMYGKCSSVEDARKVFDGIRH-KRVVEWNAMITA 175


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 202/539 (37%), Positives = 319/539 (59%), Gaps = 6/539 (1%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           ++E Y  S   E+A A   F ++       ++ ++   A S K   A+  + +M + S  
Sbjct: 246 LLELYTKS--GEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVV 303

Query: 106 -SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
             +  T +  L+ACA ++ L    QIHS VL+ G  ++  +   L+DVYAK GEI ++ K
Sbjct: 304 VPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVK 363

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           +F     ++  +WN +I G  Q     +A++LF  M    + +P EVT    L A   L 
Sbjct: 364 LFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDI-QPTEVTYSSVLRASASLV 422

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A + G +IH    +   + + VV N++IDMYAKCG +D A   FD +  ++  V+WN ++
Sbjct: 423 ALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALI 481

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGV 343
             +++HG G  AL LF+ M ++  KP+ ++++  L AC++AGL+D G   F SM  + G+
Sbjct: 482 CGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGI 541

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
           +P ++HY  +V LLGR+G+  EA  ++  +     +++W+ LLGAC ++ ++++ ++ ++
Sbjct: 542 EPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQ 601

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
           +++EM   +    VLLSN+YA  +RWD+V  VRK MK + VKK PG S++E  GV+H F 
Sbjct: 602 RVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFT 661

Query: 464 TSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFG 523
             D SH   + I+  L+ +  K ++ GY    S VL D+ ++EKE  L  HSE+LA+AFG
Sbjct: 662 VGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFG 721

Query: 524 LISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LI      SI++ KNLRIC DCH VIKL+SK+  REI++RD  RFH F+ G CSC DYW
Sbjct: 722 LIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 2/303 (0%)

Query: 91  NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150
           +++L + QM    +R +  T S ALK+C  + A      +H   L+  +  D  +G  LL
Sbjct: 188 DSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALL 247

Query: 151 DVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE 210
           ++Y K GEI  A++ F+EM   D+  W+ +I+  AQ + + EA++LF RM+   V  PN 
Sbjct: 248 ELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNN 307

Query: 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270
            T    L AC  L     G++IH  + +  LD NV V NA++D+YAKCG ++ + ++F  
Sbjct: 308 FTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTG 367

Query: 271 IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330
               K+ V WNT+++ +   GDG +AL LF  M    ++P +V+Y + L A      ++ 
Sbjct: 368 -STEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEP 426

Query: 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
           G ++ +         +     S++D+  + GR+ +A      +    D V W  L+    
Sbjct: 427 GRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALICGYS 485

Query: 391 LYG 393
           ++G
Sbjct: 486 IHG 488



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 175/340 (51%), Gaps = 6/340 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  LF ++   +T  F  + +G + S +   A     ++ R  +  +    +  LK    
Sbjct: 57  ASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVS 116

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +      L +H++V + G  ADA +GT L+D Y+  G + +A++VFD +  +D+ SW  +
Sbjct: 117 MDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGM 176

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +A  A+     +++ LF +M++ G ++PN  T+  AL +C  L A+K G  +H    +  
Sbjct: 177 VACYAENYCHEDSLLLFCQMRIMG-YRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVC 235

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
            D ++ V  A++++Y K G + +A + F+ +  +  L+ W+ M+  +A       ALELF
Sbjct: 236 YDRDLYVGIALLELYTKSGEIAEAQQFFEEMP-KDDLIPWSLMISRYAQSDKSKEALELF 294

Query: 301 EQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
            +M ++  V P++ ++ + L AC    L++ G ++ + +   G+  N+    +++D+  +
Sbjct: 295 CRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAK 354

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLL-GACQLYGDVEMA 398
            G ++ +  +    S   + V W T++ G  QL GD E A
Sbjct: 355 CGEIENSVKLFTG-STEKNEVAWNTIIVGYVQL-GDGEKA 392



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 11/261 (4%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +H H+L+HG   D      LL+ Y   G +  A K+FDEM + +  S+  L  G ++ + 
Sbjct: 25  LHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQ 84

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
              A  L  R+  EG ++ N+      L     +        +H Y+ +     +  V  
Sbjct: 85  FQRARRLLLRLFREG-YEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGT 143

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           A+ID Y+ CG +D A +VFD I   K +V+W  MV  +A +     +L LF QM   G +
Sbjct: 144 ALIDAYSVCGNVDAARQVFDGIY-FKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYR 202

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK----PNMKHYGSVVDLLGRAGRLQE 365
           P++ +  AAL +CN  GL  +  ++  S+  C +K     ++    ++++L  ++G + E
Sbjct: 203 PNNFTISAALKSCN--GL--EAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAE 258

Query: 366 ACDIVKSVSMGTDMVLWQTLL 386
           A    + +    D++ W  ++
Sbjct: 259 AQQFFEEMP-KDDLIPWSLMI 278


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/514 (37%), Positives = 304/514 (59%), Gaps = 5/514 (0%)

Query: 72  STND---FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETL 128
           ST D   + +++ G A +  P  A+     MLRG  + +  T +  LKA     +     
Sbjct: 2   STRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGE 61

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           QIH+  +++ +  D  +G+ LLD+YA+ G +  A  VFD++  ++  SWNALIAG A+  
Sbjct: 62  QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 121

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
                + +F  M+  G F+    T     +A   +GA ++G  +H ++ +    ++  V 
Sbjct: 122 DGETTLLMFAEMQRNG-FEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 180

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N ++DMYAK G +  A +VFD++  +K LVTWN+M+ AFA +G G  A+  FE+M + GV
Sbjct: 181 NTILDMYAKSGSMIDARKVFDHVD-KKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGV 239

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
             + +++L+ L AC+H GLV +G + F+ M    ++P + HY +VVDLLGRAG L +A  
Sbjct: 240 HLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALV 299

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428
            +  + M     +W  LLG+C+++ + ++ + A+  + E+  ++ G  VLL N+YA+  +
Sbjct: 300 FIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQ 359

Query: 429 WDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKE 488
           WD   RVRK MK   VKK P  S++E+   +H F  +D +H +  EIY+K +EI  +I++
Sbjct: 360 WDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRK 419

Query: 489 YGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDV 548
            GY   T  VL  + E+E++  L YHSEK+A+AF LI+     +I++ KN+RIC DCH  
Sbjct: 420 AGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSA 479

Query: 549 IKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            + ISKV+ REI+VRD  RFH F  G+CSC DYW
Sbjct: 480 FRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 147/308 (47%), Gaps = 14/308 (4%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V S +++ YA     ++A A  +F Q+ + +   +NA++ G A        +L + +M R
Sbjct: 78  VGSALLDMYARCGRMDMAIA--VFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQR 135

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
               +   T S    A A + AL +   +H+H+++ G    A +G T+LD+YAK G ++ 
Sbjct: 136 NGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMID 195

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+KVFD +  +D+ +WN+++   AQ  L  EAV  F+ M+  GV   N++T L  L AC 
Sbjct: 196 ARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGV-HLNQITFLSILTACS 254

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
           H G  KEG +  + ++E  L+  +     V+D+  + GLL+ A      +  + +   W 
Sbjct: 255 HGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWG 314

Query: 282 TMVMAFAVHGDGP----RALELFEQMGRAGVKPDDVSYLAALCAC-NHAGLVDDGVRLFN 336
            ++ +  +H +       A  +FE      + PDD      L       G  D   R+  
Sbjct: 315 ALLGSCRMHKNAKIGQFAADHVFE------LDPDDTGPPVLLYNIYASTGQWDAAARVRK 368

Query: 337 SMANCGVK 344
            M   GVK
Sbjct: 369 MMKATGVK 376



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 3/225 (1%)

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
           M  RD+ SW +LIAG AQ ++  EA+ L   M     FKPN  T    L A G   +   
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRG-RFKPNGFTFASLLKAAGASASSGI 59

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G++IH    +     +V V +A++DMYA+CG +D A  VFD ++ +   V+WN ++  FA
Sbjct: 60  GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNG-VSWNALIAGFA 118

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK 348
             GDG   L +F +M R G +    +Y +   A    G ++ G  +   M   G + +  
Sbjct: 119 RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF 178

Query: 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
              +++D+  ++G + +A  +   V    D+V W ++L A   YG
Sbjct: 179 VGNTILDMYAKSGSMIDARKVFDHVDK-KDLVTWNSMLTAFAQYG 222


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/535 (36%), Positives = 311/535 (58%), Gaps = 9/535 (1%)

Query: 51  ALSPLNELAYAHALFRQINAP-STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL 109
           A S   ELA A  +F       +   + A++ G   +     AV+ + +M       +  
Sbjct: 346 AYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEF 405

Query: 110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169
           T S  LKA   +L      QIH+ V++  +     +GT LL  Y+K G    A  +F  +
Sbjct: 406 TYSAMLKASLSILPP----QIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMI 461

Query: 170 GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW-KE 228
             +D+ +W+A+++  AQ      A  LF +M ++G+ KPNE T+   + AC    A   +
Sbjct: 462 EQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGI-KPNEFTISSVIDACACPSAGVDQ 520

Query: 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
           G + H    + R    + V +A++ MY++ G +D A  VF+  +  + LV+WN+M+  +A
Sbjct: 521 GRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFER-QTDRDLVSWNSMISGYA 579

Query: 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNM 347
            HG   +A+E F QM  +G++ D V++LA +  C H GLV +G + F+SM  +  + P M
Sbjct: 580 QHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTM 639

Query: 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
           +HY  +VDL  RAG+L E   +++ +      ++W+TLLGAC+++ +VE+ + ++ KL+ 
Sbjct: 640 EHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLS 699

Query: 408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDK 467
           +  ++   +VLLSN+YAA  +W +   VRK M  R VKK  G S+I++   +H F   DK
Sbjct: 700 LEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDK 759

Query: 468 SHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
           SH    +IY+KL  I+ ++K+ GY+  TS VLHDI E++KE  L  HSE+LA+AFGLI+T
Sbjct: 760 SHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIAT 819

Query: 528 SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
              T +Q+ KNLR+C DCH V+K++S + +REII+RD  RFH F  GACSC D+W
Sbjct: 820 PPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 153/312 (49%), Gaps = 11/312 (3%)

Query: 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF-LADALLGTTLLDVYAKVGEI 159
           RG    D+ T S  LKAC  V       Q+H   ++ G    +   GT+L+D+Y K G +
Sbjct: 92  RGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSV 151

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
               +VF+ M  +++ +W +L+ G A   + SE + LF RM+ EG++ PN  T    L+A
Sbjct: 152 CEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW-PNPFTFASVLSA 210

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
               GA   G ++H    +     +V VCN++++MYAKCGL++ A  VF+ ++ R  +V+
Sbjct: 211 VASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETR-DMVS 269

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           WNT++    ++     AL+LF +      K    +Y   +  C +       + L   + 
Sbjct: 270 WNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANL----KQLALARQLH 325

Query: 340 NCGVKPNMKHYGSVV----DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395
           +C +K      G+V+    D   + G L +A +I    +   ++V W  ++  C   GD+
Sbjct: 326 SCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDI 385

Query: 396 EMAEIASRKLVE 407
            +A +   ++ E
Sbjct: 386 PLAVVLFSRMRE 397



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 149/336 (44%), Gaps = 11/336 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A ++F  +       +N ++ GL  +     A+  + +      +    T +  +K CA 
Sbjct: 255 AKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCAN 314

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD-EMGVRDIASWNA 179
           +  L    Q+HS VL+HGF     + T L D Y+K GE+  A  +F    G R++ SW A
Sbjct: 315 LKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTA 374

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I+G  Q      AV LF RM+ + V  PNE T    L A   +       +IH  + + 
Sbjct: 375 IISGCIQNGDIPLAVVLFSRMREDRVM-PNEFTYSAMLKASLSILP----PQIHAQVIKT 429

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
                  V  A++  Y+K G  + A  +F  I+ +K +V W+ M+   A  GD   A  L
Sbjct: 430 NYQHIPSVGTALLASYSKFGSTEDALSIFKMIE-QKDVVAWSAMLSCHAQAGDCEGATYL 488

Query: 300 FEQMGRAGVKPDD--VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           F +M   G+KP++  +S +   CAC  AG VD G +             +    ++V + 
Sbjct: 489 FNKMAIQGIKPNEFTISSVIDACACPSAG-VDQGRQFHAISIKYRYHDAICVSSALVSMY 547

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            R G +  A  IV       D+V W +++     +G
Sbjct: 548 SRKGNIDSA-QIVFERQTDRDLVSWNSMISGYAQHG 582



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 153/351 (43%), Gaps = 16/351 (4%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F  +   +   + ++L G AH+   +  +  + +M       +  T +  L A A   A
Sbjct: 157 VFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGA 216

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L    ++H+  ++ G  +   +  +L+++YAK G +  AK VF+ M  RD+ SWN L+AG
Sbjct: 217 LDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG 276

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
           L       EA+ LF   +   + K  + T    +  C +L       ++H  + +    +
Sbjct: 277 LQLNECELEALQLFHESRAT-MGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHL 335

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
              V  A+ D Y+KCG L  A  +F      +++V+W  ++     +GD P A+ LF +M
Sbjct: 336 TGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM 395

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV-KPNMKHYGSVVDLL----G 358
               V P++ +Y A L A          + +     +  V K N +H  SV   L     
Sbjct: 396 REDRVMPNEFTYSAMLKA---------SLSILPPQIHAQVIKTNYQHIPSVGTALLASYS 446

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           + G  ++A  I K +    D+V W  +L      GD E A     K+   G
Sbjct: 447 KFGSTEDALSIFKMIEQ-KDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQG 496


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 190/543 (34%), Positives = 310/543 (57%), Gaps = 6/543 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +++FY  S  + +  A  LF ++       +N ++ G A   K   A   +R++  
Sbjct: 287 VSNALLDFY--SKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQF 344

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
            +        +  L   +  L      QIH+  +     ++ L+G +L+D+YAK G+   
Sbjct: 345 TAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEE 404

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+ +F  +  R    W A+I+   Q     E + LF +M+   V   ++ T    L A  
Sbjct: 405 AEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVI-ADQATFASLLRASA 463

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            + +   G ++H +I +     NV   +A++D+YAKCG +  A + F  +  R ++V+WN
Sbjct: 464 SIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWN 522

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            M+ A+A +G+    L+ F++M  +G++PD VS+L  L AC+H+GLV++G+  FNSM   
Sbjct: 523 AMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQI 582

Query: 342 -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + P  +HY SVVD+L R+GR  EA  ++  + +  D ++W ++L AC+++ + E+A  
Sbjct: 583 YKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARR 642

Query: 401 ASRKLVEMGS-NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
           A+ +L  M    +   +V +SN+YAA  +W++V +V KAM++R VKK+P +S++E+    
Sbjct: 643 AADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHET 702

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H F  +D+ H +  EI +K+D +   ++E GY   TSC LH+  E+ K  +L YHSE+LA
Sbjct: 703 HMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLA 762

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +AF LIST E + I V KNLR C DCH  IK+ISK+  REI VRD  RFH F+DG CSC 
Sbjct: 763 IAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCG 822

Query: 580 DYW 582
           D+W
Sbjct: 823 DFW 825



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 192/408 (47%), Gaps = 17/408 (4%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            LL  C  NG      I Q+Q  +   G + S+L  V + +++ Y  S  N L  A  LF
Sbjct: 154 TLLSGC--NGHEMGNQITQVQTQIIKLG-YDSRLI-VGNTLVDSYCKS--NRLDLACQLF 207

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV---- 121
           +++    +  +NA++ G +       AV  + +M     +    T  FA   CA +    
Sbjct: 208 KEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFT--FAAVLCANIGLDD 265

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
           + L +  QIHS V++  F+ +  +   LLD Y+K   ++ A+K+FDEM  +D  S+N +I
Sbjct: 266 IVLGQ--QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVII 323

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           +G A       A DLF+ ++    F   +      L+   +   W+ G +IH        
Sbjct: 324 SGYAWDGKHKYAFDLFRELQFTA-FDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA 382

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           D  ++V N+++DMYAKCG  ++A  +F N+  R S V W  M+ A+   G     L+LF 
Sbjct: 383 DSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHR-SAVPWTAMISAYVQKGFYEEGLQLFN 441

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           +M +A V  D  ++ + L A      +  G +L + +   G   N+    +++D+  + G
Sbjct: 442 KMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCG 501

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
            +++A    + +    ++V W  ++ A    G+ E    + +++V  G
Sbjct: 502 SIKDAVQTFQEMP-DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSG 548



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 2/173 (1%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           ++  Y K G +  A+K+FD M  R   +W  LI G +Q N   EA +LF +M+  G  +P
Sbjct: 89  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGT-EP 147

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           + VT +  L+ C       +  ++   I +   D  ++V N ++D Y K   LD A ++F
Sbjct: 148 DYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLF 207

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
             +    S V++N M+  ++  G   +A+ LF +M  +G+KP + ++ A LCA
Sbjct: 208 KEMPEIDS-VSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCA 259



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 1/130 (0%)

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N V  N +I  Y K G L +A ++FD +   ++ VTW  ++  ++       A ELF QM
Sbjct: 82  NTVSTNMMISGYVKSGNLGEARKLFDGM-VERTAVTWTILIGGYSQLNQFKEAFELFVQM 140

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
            R G +PD V+++  L  CN   + +   ++   +   G    +    ++VD   ++ RL
Sbjct: 141 QRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRL 200

Query: 364 QEACDIVKSV 373
             AC + K +
Sbjct: 201 DLACQLFKEM 210


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 182/501 (36%), Positives = 294/501 (58%), Gaps = 5/501 (0%)

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
           A S++   A   + +++R S   +  + S  L+AC  ++ L    QIH+H ++ G  +D 
Sbjct: 340 AQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDL 399

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            +G  L+D YAK  ++ S+ K+F  +   +  SWN ++ G +Q  L  EA+ +F   +M+
Sbjct: 400 FVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVF--CEMQ 457

Query: 204 GVFKP-NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262
               P  +VT    L AC    + +   +IH  I +   + + V+ N++ID YAKCG + 
Sbjct: 458 AAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIR 517

Query: 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322
            A +VF ++   + +++WN ++  +A+HG    ALELF++M ++ V+ +D++++A L  C
Sbjct: 518 DALKVFQHLM-ERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVC 576

Query: 323 NHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           +  GLV+ G+ LF+SM  + G+KP+M+HY  +V LLGRAGRL +A   +  +      ++
Sbjct: 577 SSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMV 636

Query: 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441
           W+ LL +C ++ +V +   ++ K++E+   +   +VLLSN+YAA    D V  +RK+M+N
Sbjct: 637 WRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRN 696

Query: 442 RDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHD 501
             V+KVPG S++E+ G IH F      H   R I   L+ +  K    GY    + VLHD
Sbjct: 697 IGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHD 756

Query: 502 IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREII 561
           + +E+K   L  HSE+LA+A+GL+ T     I++ KNLR C DCH    +ISK+  REII
Sbjct: 757 VDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREII 816

Query: 562 VRDRVRFHRFKDGACSCKDYW 582
           VRD  RFH F+DG CSC DYW
Sbjct: 817 VRDINRFHHFEDGKCSCGDYW 837



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 147/332 (44%), Gaps = 3/332 (0%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           L  LA A  LF ++   +   F  +++  A       A   +R++    H  +    +  
Sbjct: 109 LGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTM 168

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           LK    + A      +HS   + G   +A +G+ L+D Y+    +  A+ VF+ +  +D 
Sbjct: 169 LKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDA 228

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
             W A+++  ++ +    A  +F +M++ G  KPN   +   L A   L +   G  IH 
Sbjct: 229 VVWTAMVSCYSENDCPENAFRVFSKMRVSGC-KPNPFALTSVLKAAVCLPSVVLGKGIHG 287

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +   D    V  A++DMYAKCG +  A   F+ I     ++  + M+  +A      
Sbjct: 288 CAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIP-YDDVILLSFMISRYAQSNQNE 346

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
           +A ELF ++ R+ V P++ S  + L AC +   +D G ++ N     G + ++    +++
Sbjct: 347 QAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALM 406

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           D   +   +  +  I  S+    + V W T++
Sbjct: 407 DFYAKCNDMDSSLKIFSSLRDANE-VSWNTIV 437



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 123/268 (45%), Gaps = 16/268 (5%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLA--DALLGTTLLDVYAKVGEIVSAKK 164
           D+  C+  L+ C           +H HV+R G +   D      LL++Y K+G + SA++
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           +FD M  R++ S+  L+   AQ      A  LF+R++ EG  + N+  +   L     + 
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEG-HEVNQFVLTTMLKLAIAMD 176

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A      +H    +   D N  V + +ID Y+ C L+  A  VF+ I  RK  V W  MV
Sbjct: 177 AAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGI-VRKDAVVWTAMV 235

Query: 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344
             ++ +     A  +F +M  +G KP+  +  + L     A +    V L   +  C +K
Sbjct: 236 SCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVL----KAAVCLPSVVLGKGIHGCAIK 291

Query: 345 ------PNMKHYGSVVDLLGRAGRLQEA 366
                 P++   G+++D+  + G +++A
Sbjct: 292 TLNDTEPHVG--GALLDMYAKCGDIKDA 317


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 206/600 (34%), Positives = 322/600 (53%), Gaps = 69/600 (11%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           A S   E + A  +F +    +   FN ++R   +++    A+  ++ ML  +   D  T
Sbjct: 80  AYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYT 139

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
               LKAC+ +  L   LQ+H  +++ G   +  +G  L+ +Y K G +  A+KV D+M 
Sbjct: 140 FPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMP 199

Query: 171 VRDIASWNALIAGLAQ-----------------------GNLASEAV------------- 194
            RD+ SWN+++AG AQ                       G +AS +              
Sbjct: 200 YRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYI 259

Query: 195 -DLFKRMKMEGVFK-------------PNE-VTVLGALAACG----------------HL 223
            ++F+RM  + +               PNE V++   +  CG                 L
Sbjct: 260 HNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDL 319

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
            A   G ++H+YI +  L  N+++ NA++DMYAKCG L++A +VFD ++ R  +V+W +M
Sbjct: 320 SALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLR-DVVSWTSM 378

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCG 342
           + A+   G G  A+ LF +M  +G  PD +++++ L AC+H GL+D G   F  M    G
Sbjct: 379 MSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYG 438

Query: 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIAS 402
           + P ++H+  +VDL GRAG ++EA   +K + M  +  +W  LL AC+++  +++  +A+
Sbjct: 439 IVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAA 498

Query: 403 RKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKF 462
             L ++     G +VLLSN+YA    W DV  VR AMK   +KKVPG S +E+ G +H F
Sbjct: 499 DLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTF 558

Query: 463 FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAF 522
              D+ H + + IY +LD ++ K+KE GY   T   LHD+  E+KE  L  HSEKLA+ F
Sbjct: 559 LAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVF 618

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +++T + T I++ KNLR+C DCH  IKLISK+ +R IIVRD  RFH F +G CSC DYW
Sbjct: 619 AILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678


>gi|297792411|ref|XP_002864090.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297309925|gb|EFH40349.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 534

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 171/435 (39%), Positives = 279/435 (64%), Gaps = 5/435 (1%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           +++   K+GE   AKKV      +++ +WN +I G  +     EA+   K M     FKP
Sbjct: 104 IIESLVKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDFKP 163

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           N+ +   +LAAC  LG       +H  + +  ++ N ++ +A++D+YAKCG ++ + EVF
Sbjct: 164 NKFSFASSLAACARLGDLHHAKWVHSLMIDGGIEFNAILSSALVDVYAKCGDIETSREVF 223

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
            ++K R  +  WN M+  FA HG    A+ +F +M    V PD +++L  L AC+H GL+
Sbjct: 224 CSVK-RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLL 282

Query: 329 DDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           ++G   F  M+    ++P ++HYG++VDLLGRAG+++EA ++++S+ +  D+V+W++LL 
Sbjct: 283 EEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGQVKEAYELIESMPIEPDVVIWRSLLS 342

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           + + + + E+ EIA + L +  S   GD+VLLSN+Y++ ++W+   +VR+ M    ++K 
Sbjct: 343 SSRTFKNPELGEIAIQNLSKAKS---GDYVLLSNIYSSTKKWESAQKVRELMTKEGIRKA 399

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
            G S++E GGVIH+F   D SH++ + IY+ L+ ++ K K  G+ + T  VL D+ EEEK
Sbjct: 400 KGKSWVEFGGVIHRFKAGDTSHIETKAIYKVLEGLIQKTKSEGFVSDTDLVLMDVSEEEK 459

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           E  L YHSEKLA+A+ ++ +S  T I++ KN+R+C DCH+ IK +SK+ NR I +RDR+R
Sbjct: 460 EENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVITMRDRIR 519

Query: 568 FHRFKDGACSCKDYW 582
           FHRF+DG CSCKDYW
Sbjct: 520 FHRFEDGLCSCKDYW 534



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 128/241 (53%), Gaps = 5/241 (2%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS-H 104
           IIE  +L  + E   A  + R  +  +   +N ++ G   + +   A+   + ML  S  
Sbjct: 104 IIE--SLVKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDF 161

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           + +  + + +L ACAR+  L     +HS ++  G   +A+L + L+DVYAK G+I ++++
Sbjct: 162 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDGGIEFNAILSSALVDVYAKCGDIETSRE 221

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VF  +   D++ WNA+I G A   LA+EA+ +F  M+ E V  P+ +T LG L AC H G
Sbjct: 222 VFCSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHV-SPDSITFLGLLTACSHCG 280

Query: 225 AWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
             +EG +    + R   +   +    A++D+  + G + +A+E+ +++     +V W ++
Sbjct: 281 LLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGQVKEAYELIESMPIEPDVVIWRSL 340

Query: 284 V 284
           +
Sbjct: 341 L 341


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 195/552 (35%), Positives = 313/552 (56%), Gaps = 11/552 (1%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAH---ALFRQINAPSTNDFNAVLRGLAHSSKPTN 91
           F+S L+  R   I    ++  N+L YA     LF  +       +N+++ G +      +
Sbjct: 66  FKSLLY--RDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLH-MS 122

Query: 92  AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD 151
              +Y      S + + +T    + AC    AL     IH   ++ G   +  +  +L++
Sbjct: 123 LTAFYTMKFEMSVKPNEVTILSMISACNG--ALDAGKYIHGFGIKVGGTLEVKVANSLIN 180

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
           +Y K G++ SA ++F+ +   +  SWN++IA       A E +D F +M+  G+ + +E 
Sbjct: 181 MYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGI-EQDEG 239

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T+L  L AC HLG  K  + IH  +        + +  A++D YAK G L  ++ VF  +
Sbjct: 240 TILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEV 299

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
                 V W  M+  +A HG G  A++LFE M   G++PD V++   L AC+H+GLV++G
Sbjct: 300 GFADR-VAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEG 358

Query: 332 VRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
              FN M+   G++P + HY  +VDLLGR G L +A ++++++ M  +  +W  LLGAC+
Sbjct: 359 KSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACR 418

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
           ++G++E+ +  +  L+ M   +  ++++LSN+Y+A   W D  +VR  +K R +K+ PG+
Sbjct: 419 VHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGY 478

Query: 451 SYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           S IE G   H FF  D+SH +  +IY KL+E++ KI++ GY++ T  VL D+ EE KE+ 
Sbjct: 479 SSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDM 538

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           +  HSEKLA+AFGL+ + E  ++ + KNLRIC DCH   KLIS +  R II+RD  RFH 
Sbjct: 539 INKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHH 598

Query: 571 FKDGACSCKDYW 582
           F DG CSC DYW
Sbjct: 599 FSDGFCSCADYW 610



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 6/265 (2%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           +IH+ V +     D  +G  L+  Y K+G    A K+FD+M  +D+ SWN+LI+G ++  
Sbjct: 60  EIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR-- 117

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
               ++  F  MK E   KPNEVT+L  ++AC   GA   G  IH +  +    + V V 
Sbjct: 118 CLHMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGFGIKVGGTLEVKVA 175

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N++I+MY K G L  A  +F+ I    + V+WN+++ A   +G     ++ F +M R G+
Sbjct: 176 NSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGI 234

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
           + D+ + LA L AC H G+      +   M   G    +    +++D   + GRL  +  
Sbjct: 235 EQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYG 294

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYG 393
           +   V    D V W  +L     +G
Sbjct: 295 VFTEVGFA-DRVAWTAMLAGYAAHG 318


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 190/543 (34%), Positives = 310/543 (57%), Gaps = 6/543 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +++FY  S  + +  A  LF ++       +N ++ G A   K   A   +R++  
Sbjct: 247 VSNALLDFY--SKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQF 304

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
            +        +  L   +  L      QIH+  +     ++ L+G +L+D+YAK G+   
Sbjct: 305 TAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEE 364

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+ +F  +  R    W A+I+   Q     E + LF +M+   V   ++ T    L A  
Sbjct: 365 AEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVI-ADQATFASLLRASA 423

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            + +   G ++H +I +     NV   +A++D+YAKCG +  A + F  +  R ++V+WN
Sbjct: 424 SIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWN 482

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
            M+ A+A +G+    L+ F++M  +G++PD VS+L  L AC+H+GLV++G+  FNSM   
Sbjct: 483 AMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQI 542

Query: 342 -GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + P  +HY SVVD+L R+GR  EA  ++  + +  D ++W ++L AC+++ + E+A  
Sbjct: 543 YKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARR 602

Query: 401 ASRKLVEMGS-NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVI 459
           A+ +L  M    +   +V +SN+YAA  +W++V +V KAM++R VKK+P +S++E+    
Sbjct: 603 AADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHET 662

Query: 460 HKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLA 519
           H F  +D+ H +  EI +K+D +   ++E GY   TSC LH+  E+ K  +L YHSE+LA
Sbjct: 663 HMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLA 722

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +AF LIST E + I V KNLR C DCH  IK+ISK+  REI VRD  RFH F+DG CSC 
Sbjct: 723 IAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCG 782

Query: 580 DYW 582
           D+W
Sbjct: 783 DFW 785



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 139/281 (49%), Gaps = 3/281 (1%)

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           QIHS V++  F+ +  +   LLD Y+K   ++ A+K+FDEM  +D  S+N +I+G A   
Sbjct: 231 QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDG 290

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
               A DLF+ ++    F   +      L+   +   W+ G +IH        D  ++V 
Sbjct: 291 KHKYAFDLFRELQFTA-FDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVG 349

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           N+++DMYAKCG  ++A  +F N+  R S V W  M+ A+   G     L+LF +M +A V
Sbjct: 350 NSLVDMYAKCGKFEEAEMIFTNLTHR-SAVPWTAMISAYVQKGFYEEGLQLFNKMRQASV 408

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
             D  ++ + L A      +  G +L + +   G   N+    +++D+  + G +++A  
Sbjct: 409 IADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQ 468

Query: 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
             + +    ++V W  ++ A    G+ E    + +++V  G
Sbjct: 469 TFQEMP-DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSG 508



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 109/250 (43%), Gaps = 10/250 (4%)

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N V  N +I  Y K G L +A ++FD +   ++ VTW  ++  ++       A ELF QM
Sbjct: 77  NTVSTNMMISGYVKSGNLGEARKLFDGM-VERTAVTWTILIGGYSQLNQFKEAFELFVQM 135

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
            R G +PD V+++  L  CN   + +   ++   +   G    +    ++VD   ++ RL
Sbjct: 136 QRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRL 195

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
             AC + K +    D   +  +L A     D+ + +     +++  +N   +  + + L 
Sbjct: 196 DLACQLFKEMP-EIDSFTFAAVLCANIGLDDIVLGQQIHSFVIK--TNFVWNVFVSNALL 252

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
             Y + D V   RK     ++ +  G SY     VI   +  D  H    +++ +L    
Sbjct: 253 DFYSKHDSVIDARKLFD--EMPEQDGVSY----NVIISGYAWDGKHKYAFDLFRELQFTA 306

Query: 484 FKIKEYGYAA 493
           F  K++ +A 
Sbjct: 307 FDRKQFPFAT 316



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           ++  Y K G +  A+K+FD M  R   +W  LI G +Q N   EA +LF +M+  G  +P
Sbjct: 84  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGT-EP 142

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           + VT +  L+ C       +  ++   I +   D  ++V N ++D Y K   LD A ++F
Sbjct: 143 DYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLF 202



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 68/336 (20%), Positives = 135/336 (40%), Gaps = 15/336 (4%)

Query: 57  ELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116
           EL+ A  LF ++   +T   N ++ G   S     A    R++  G     A+T +  + 
Sbjct: 62  ELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEA----RKLFDGMVERTAVTWTILIG 117

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLL---DVYAKVGEIVSAKKVFDEMGVRD 173
             +++    E  ++   + R G   D +   TLL   + +    +I   +    ++G   
Sbjct: 118 GYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDS 177

Query: 174 -IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
            +   N L+    + N    A  LFK M      + +  T    L A   L     G +I
Sbjct: 178 RLIVGNTLVDSYCKSNRLDLACQLFKEMP-----EIDSFTFAAVLCANIGLDDIVLGQQI 232

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H ++ +     NV V NA++D Y+K   +  A ++FD +   +  V++N ++  +A  G 
Sbjct: 233 HSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP-EQDGVSYNVIISGYAWDGK 291

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352
              A +LF ++           +   L   ++    + G ++            +    S
Sbjct: 292 HKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNS 351

Query: 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +VD+  + G+ +EA  I  +++  +  V W  ++ A
Sbjct: 352 LVDMYAKCGKFEEAEMIFTNLTHRS-AVPWTAMISA 386


>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
          Length = 483

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 193/529 (36%), Positives = 298/529 (56%), Gaps = 60/529 (11%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           L+ + YA  +F QI  P+   FNA++RG + S  P  A  +Y Q  R     D LT  F 
Sbjct: 14  LSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFL 73

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV-YAKVGEIVSAKKVFDEMGVRD 173
           +K+C ++  +    Q H H+++HGF  D  +  +L+ + + K G++ SA+K+FD+M  ++
Sbjct: 74  VKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMGFNKCGDVESARKLFDQMPEKN 133

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           + +W+ +I+G AQ N   +AV+LFK ++ +GV     V V+            K G    
Sbjct: 134 LVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVI------------KNG---- 177

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
                  + +N+++  A++DMYA+CG +DKA  VF+++  R +L +W  ++   A+HG  
Sbjct: 178 -------MTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTL-SWTALIAGLAMHGYS 229

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
            R+L+ F  M  AG+ P D+++ A L AC+H GL+++  R    M    VKPN       
Sbjct: 230 ERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLLEEAERFVLKMP---VKPNAP----- 281

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413
                                      +W  LLGAC+++ + E+ E   + L+++   + 
Sbjct: 282 ---------------------------VWGALLGACRIHKNAEIGERVGKILIQLLPQHS 314

Query: 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWR 473
           G +VLLSN+YA  + W+ V  +R+ MK + +KK PG S IE+ G +HKF   D SH +  
Sbjct: 315 GYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMD 374

Query: 474 EIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSI 533
           +I    +EI+ +I+  GY   T+  L DI EEEKE+AL  HSEKLA+AFG++ +   T I
Sbjct: 375 KIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGTPI 434

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           ++ KNLR+C DCH   KLISKV+ RE+IVRDR RFH F+ G CSC DYW
Sbjct: 435 RIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 483


>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Brachypodium distachyon]
          Length = 648

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 215/580 (37%), Positives = 336/580 (57%), Gaps = 31/580 (5%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND------ 75
           + Q+ A  +  G   S    + S ++  Y  S L  L  AH L  ++   ST        
Sbjct: 81  VSQIHALGSKRGLLPSSDAYLVSALLSSY--SRLGLLPCAHQLLDEMPLASTPPATLCTA 138

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           FN+++ G A  + P      +R+M     R DA+T    + A    +      Q+H+   
Sbjct: 139 FNSLISGCALHALPAACFALFRRMRVAGVRFDAVTLLTLVPAAPPSV----VPQLHALAA 194

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGLAQGNLASEA 193
           R G  A+  +   L+ VYA+ G  + A++VFDEM    RD+ SWNA+++  +Q  LA +A
Sbjct: 195 RAGLAAETSVANCLISVYARRGAAL-ARQVFDEMPAASRDLVSWNAVLSAHSQNGLAVDA 253

Query: 194 VDLFKRMKM---EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE--RLDMNVVVC 248
           +DL+ RM+     GV +P+ VT++  L++C HLGA   G  +  Y+R +      NV +C
Sbjct: 254 LDLYSRMRGCDGHGV-EPDAVTLVSVLSSCAHLGARSVGLGVERYMRGKLPGFRTNVQLC 312

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           NA+I+ YA+CG L +A ++F+ +  RKS+V+W  ++  + +HG G  A+ LF+ M   G+
Sbjct: 313 NALINFYARCGCLPQAQQLFNEMP-RKSIVSWTALITGYGMHGHGEVAINLFQTMVSEGI 371

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEAC 367
           +PD+V+ +  L AC+HAG+ D+G + F++M +   ++P ++HY  +VDLLGRAGRL+EA 
Sbjct: 372 RPDNVAMVGLLSACSHAGMYDEGRKYFSAMESAYQLRPTLEHYTCMVDLLGRAGRLKEAR 431

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
           +++ S+ M  D  +W  LLGAC+++ +VE+ E A   ++E+   N G +VL++N+Y    
Sbjct: 432 ELISSMPMPADGAVWGALLGACKIHKNVEIGEEAFEHVIEVEPTNVGYYVLMANIYTDTG 491

Query: 428 RWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487
           + D V RVR  M+ R +KK PG SY+E  G +H F   D SH + + IYE + ++   +K
Sbjct: 492 QLDCVVRVRAMMRERGLKKEPGCSYVEHKGRVHLFMADDHSHPQAKRIYELVLKLEQMVK 551

Query: 488 E-----YGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
           E      G   G     H   E+     + +HSEKLAVAFG+++T   + I V KNLR+C
Sbjct: 552 EKTDGTVGIQGGRMIEGHS--EKTAVPLIGFHSEKLAVAFGMLNTV-GSEIAVIKNLRVC 608

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +CH  +K +S + NR  +VRD  RFHRF+DGACSCKDYW
Sbjct: 609 GNCHSFLKTVSAIANRVFLVRDASRFHRFEDGACSCKDYW 648


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 202/583 (34%), Positives = 325/583 (55%), Gaps = 15/583 (2%)

Query: 4   LNALLQKCSSNGAVSH---IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
           ++ +LQ C+ NGAV      H K ++  L       + L       I  Y+     ELA 
Sbjct: 64  VHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVL-------INAYSKCGFVELA- 115

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
              +F  +   S   +N ++     +   + A+  + +M     +    T S  L AC  
Sbjct: 116 -RQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGV 174

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
                E  ++H   ++     +  +GT LLD+YAK G I  A +VF+ M  +   +W+++
Sbjct: 175 NCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSM 234

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           +AG  Q     EA+ L++R +   + + N+ T+   + AC +L A  EG ++H  I +  
Sbjct: 235 VAGYVQNKNYEEALLLYRRAQRMSL-EQNQFTLSSVICACSNLAALIEGKQMHAVICKSG 293

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
              NV V ++ +DMYAKCG L +++ +F  ++  K+L  WNT++  FA H      + LF
Sbjct: 294 FGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ-EKNLELWNTIISGFAKHARPKEVMILF 352

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGR 359
           E+M + G+ P++V++ + L  C H GLV++G R F  M    G+ PN+ HY  +VD+LGR
Sbjct: 353 EKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGR 412

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG L EA +++KS+       +W +LL +C++Y ++E+AE+A+ KL E+   N G+ VLL
Sbjct: 413 AGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLL 472

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YAA ++W+++ + RK +++ DVKKV G S+I++   +H F   +  H + REI   L
Sbjct: 473 SNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTL 532

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           D ++ K +++GY       LHD+   +KE  L  HSEKLA+ FGL+   E++ +++ KNL
Sbjct: 533 DNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNL 592

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RIC DCH+ +K  S    R IIVRD  RFH F DG CSC D+W
Sbjct: 593 RICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 177/424 (41%), Positives = 272/424 (64%), Gaps = 6/424 (1%)

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           ++  K +F +MG + + SWN +I    +  +  EAV+L+  M+ +G F+P+ V++   L 
Sbjct: 260 VMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADG-FEPDAVSITSVLP 318

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           ACG   A   G KIH YI  ++L  N+++ NA+IDMYAKCG LD+A +VF+N+K R  +V
Sbjct: 319 ACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSR-DVV 377

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +W  M+ A+   G G  A+ LF +M  +G+ PD ++++  L AC+HAGL+++G   F  M
Sbjct: 378 SWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 437

Query: 339 AN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEM 397
            +   + P ++H   +VDLLGRAG+++EA   ++ + M  +  +W  LLGAC+++ + ++
Sbjct: 438 TDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDI 497

Query: 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGG 457
             +A+ KL ++     G +VLLSN+YA   RW++V  +R  MK++ +KK PG S +EV  
Sbjct: 498 GLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR 557

Query: 458 VIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEK 517
           +IH F   D+SH +  EIY +LD ++ K+KE GY   +   LHD+ EE+KE  L  HSEK
Sbjct: 558 IIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEK 617

Query: 518 LAVAFGLISTSEATS---IQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDG 574
           LA+ F L++T E  S   I++ KNLRIC DCH   KLIS++ +REII+RD  RFH F+ G
Sbjct: 618 LAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFG 677

Query: 575 ACSC 578
            CSC
Sbjct: 678 VCSC 681



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 149/343 (43%), Gaps = 36/343 (10%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           A + L ++A A  +F +I   +    N ++R   ++      +  +  M     + D  T
Sbjct: 84  AYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYT 143

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
               LKAC+    +    +IH    + G  +   +G  L+ +Y K G +  A+ V DEM 
Sbjct: 144 FPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMS 203

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
            RD+ SWN+L+AG AQ     +A+++ +  +ME V   ++   + +L             
Sbjct: 204 RRDVVSWNSLVAGYAQNQRFDDALEVCR--EMESVKISHDAGTMASLLPA---------- 251

Query: 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
            +     E     NV+    V DM+ K G              +KSLV+WN M+  +  +
Sbjct: 252 -VSNTTTE-----NVMY---VKDMFFKMG--------------KKSLVSWNVMIGVYMKN 288

Query: 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350
                A+EL+  M   G +PD VS  + L AC     +  G ++   +    + PN+   
Sbjct: 289 AMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 348

Query: 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
            +++D+  + G L  A D+ +++    D+V W  ++ A    G
Sbjct: 349 NALIDMYAKCGCLDRARDVFENMK-SRDVVSWTAMISAYGFSG 390



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 132/289 (45%), Gaps = 5/289 (1%)

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           Y   +F ++   S   +N ++     ++ P  AV  Y  M       DA++ +  L AC 
Sbjct: 262 YVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACG 321

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
              AL    +IH ++ R   + + LL   L+D+YAK G +  A+ VF+ M  RD+ SW A
Sbjct: 322 DTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTA 381

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +I+         +AV LF +M+  G+  P+ +  +  LAAC H G  +EG    + + + 
Sbjct: 382 MISAYGFSGRGCDAVALFSKMQDSGLV-PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 440

Query: 240 -RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
            ++   +     ++D+  + G + +A++    +    +   W  ++ A  VH +    L 
Sbjct: 441 YKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLL 500

Query: 299 LFEQMGRAGVKPDDVSYLAALCAC-NHAGLVDDGVRLFNSMANCGVKPN 346
             +++ +  + P+   Y   L      AG  ++   + N M + G+K N
Sbjct: 501 AADKLFQ--LAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN 547



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 2/196 (1%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +HS ++      ++ LG  L+  YA + ++ +A+KVFDE+  R++   N +I        
Sbjct: 62  VHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGF 121

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
             E + +F  M    V KP+  T    L AC   G    G KIH    +  L   + V N
Sbjct: 122 YREGIQVFGTMCSCHV-KPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGN 180

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
            ++ MY KCG L +A  V D +  R+ +V+WN++V  +A +     ALE+  +M    + 
Sbjct: 181 GLVSMYGKCGFLSEARLVLDEM-SRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKIS 239

Query: 310 PDDVSYLAALCACNHA 325
            D  +  + L A ++ 
Sbjct: 240 HDAGTMASLLPAVSNT 255


>gi|145359106|ref|NP_199912.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635749|sp|Q9FI49.2|PP428_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g50990
 gi|332008636|gb|AED96019.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 534

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 170/435 (39%), Positives = 278/435 (63%), Gaps = 5/435 (1%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           +++   K+GE   AKKV      +++ +WN +I G  +     EA+   K M      KP
Sbjct: 104 IIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKP 163

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           N+ +   +LAAC  LG       +H  + +  +++N ++ +A++D+YAKCG +  + EVF
Sbjct: 164 NKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVF 223

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
            ++K R  +  WN M+  FA HG    A+ +F +M    V PD +++L  L  C+H GL+
Sbjct: 224 YSVK-RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLL 282

Query: 329 DDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           ++G   F  M+    ++P ++HYG++VDLLGRAGR++EA ++++S+ +  D+V+W++LL 
Sbjct: 283 EEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLS 342

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           + + Y + E+ EIA + L +  S   GD+VLLSN+Y++ ++W+   +VR+ M    ++K 
Sbjct: 343 SSRTYKNPELGEIAIQNLSKAKS---GDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKA 399

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
            G S++E GG+IH+F   D SH++ + IY+ L+ ++ K K  G+ + T  VL D+ EEEK
Sbjct: 400 KGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEK 459

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           E  L YHSEKLA+A+ ++ +S  T I++ KN+R+C DCH+ IK +SK+ NR II+RDR+R
Sbjct: 460 EENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIR 519

Query: 568 FHRFKDGACSCKDYW 582
           FHRF+DG CSC+DYW
Sbjct: 520 FHRFEDGLCSCRDYW 534



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 127/241 (52%), Gaps = 5/241 (2%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH- 104
           IIE  +L  + E   A  + R  +  +   +N ++ G   + +   A+   + ML  +  
Sbjct: 104 IIE--SLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 161

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           + +  + + +L ACAR+  L     +HS ++  G   +A+L + L+DVYAK G+I ++++
Sbjct: 162 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSRE 221

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VF  +   D++ WNA+I G A   LA+EA+ +F  M+ E V  P+ +T LG L  C H G
Sbjct: 222 VFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHV-SPDSITFLGLLTTCSHCG 280

Query: 225 AWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
             +EG +    + R   +   +    A++D+  + G + +A+E+ +++     +V W ++
Sbjct: 281 LLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSL 340

Query: 284 V 284
           +
Sbjct: 341 L 341


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 196/521 (37%), Positives = 302/521 (57%), Gaps = 5/521 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F  ++      FN+++ G     +   ++   R M+    + D ++    L  CA    
Sbjct: 165 VFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKE 224

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L    Q+H+  L+     +  +G+ L+D+Y K      A   F+ +  +++ SW A++  
Sbjct: 225 LLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTA 284

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q     +A+ LF  +++EGV +PNE T   AL +C  L A K G+ +     +     
Sbjct: 285 YTQNERFEDALQLFLDLEIEGV-RPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWG 343

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            + VCNA+++MY+K G +  A+ VF ++  R  +V+WN++++ +A HG    A+ +F  M
Sbjct: 344 ALSVCNALMNMYSKSGSIHDAWRVFLSMPWR-DVVSWNSVIIGYAHHGLAREAMCVFHDM 402

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFN-SMANCGVKPNMKHYGSVVDLLGRAGR 362
             A + P  V+++  L AC   GLVD+G+   N  M   G+KP  +HY  +V LL RAGR
Sbjct: 403 LLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGR 462

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L EA   + S  +GTD+V W++LL +CQ+Y +  +    + +++++  N+ G +VLLSN+
Sbjct: 463 LDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLSNM 522

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKW-REIYEKLDE 481
           YA   RWD V +VRK M+ R V+K PG S+I+VG  +H F + DK+H KW  +I  KL E
Sbjct: 523 YAKANRWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNH-KWINQITIKLKE 581

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           ++ +IK  GY    + VLHD+  E+KE  L YHSEK+A+AFGLI + E  +I++ KNLRI
Sbjct: 582 LIGQIKVIGYVPNCAVVLHDVEAEQKEEHLMYHSEKMALAFGLIHSPEGETIRIMKNLRI 641

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH  IKLIS V  R+I+VRD VRFH   DG CSC DYW
Sbjct: 642 CDDCHVAIKLISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 170/392 (43%), Gaps = 41/392 (10%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           IH+ ++R     D +    L+  Y K G +  A+++FD M  R+  S N L++G A    
Sbjct: 33  IHAQMIRAAHF-DVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASAGR 91

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
            S+A+ L K       F  NE  +  AL+A  H+ ++  G + H Y  +  L  +  VCN
Sbjct: 92  HSDALALLKAAD----FSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCN 147

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           AV+ MY +C  ++ A +VF+N+     +  +N+M+  F   G+   ++ +   M     +
Sbjct: 148 AVLHMYCQCAHVEDAVKVFENVS-GFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQ 206

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
            D VSY+A L  C     +  G ++        ++ N+    ++VD+ G+    ++A   
Sbjct: 207 WDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSA 266

Query: 370 VKSVSMGTDMVLWQTLLG----------ACQLYGDVEMAEIASRKLV-EMGSNNCGDFVL 418
            + V    ++V W  ++           A QL+ D+E+  +   +    +  N+C     
Sbjct: 267 FE-VLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAA 325

Query: 419 LSN---LYAAYERWDDVG--RVRKAMKNRDVKKVPGFSYIEVGGVIH---KFFTSDKSHV 470
           L N   L A+  +    G   V  A+ N   K           G IH   + F S    +
Sbjct: 326 LKNGNALSASAMKTGHWGALSVCNALMNMYSKS----------GSIHDAWRVFLS----M 371

Query: 471 KWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            WR++    + ++     +G A    CV HD+
Sbjct: 372 PWRDVV-SWNSVIIGYAHHGLAREAMCVFHDM 402



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 120/257 (46%), Gaps = 10/257 (3%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AH+ F  +   +   + AV+     + +  +A+  +  +     R +  T + AL +CA 
Sbjct: 263 AHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAG 322

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           + AL     + +  ++ G      +   L+++Y+K G I  A +VF  M  RD+ SWN++
Sbjct: 323 LAALKNGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSV 382

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG-DKIHEYIREE 239
           I G A   LA EA+ +F  M +  +  P+ VT +G L AC  LG   EG   ++  ++E 
Sbjct: 383 IIGYAHHGLAREAMCVFHDMLLAEIV-PSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEM 441

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV---HGDGPRA 296
            +         ++ +  + G LD+A +   +      +V W +++ +  V   +G G R 
Sbjct: 442 GIKPGREHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRV 501

Query: 297 LELFEQMGRAGVKPDDV 313
            E   Q+     KP+DV
Sbjct: 502 AEQILQL-----KPNDV 513


>gi|9758246|dbj|BAB08745.1| unnamed protein product [Arabidopsis thaliana]
          Length = 511

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 170/435 (39%), Positives = 278/435 (63%), Gaps = 5/435 (1%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208
           +++   K+GE   AKKV      +++ +WN +I G  +     EA+   K M      KP
Sbjct: 81  IIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKP 140

Query: 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268
           N+ +   +LAAC  LG       +H  + +  +++N ++ +A++D+YAKCG +  + EVF
Sbjct: 141 NKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVF 200

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328
            ++K R  +  WN M+  FA HG    A+ +F +M    V PD +++L  L  C+H GL+
Sbjct: 201 YSVK-RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLL 259

Query: 329 DDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
           ++G   F  M+    ++P ++HYG++VDLLGRAGR++EA ++++S+ +  D+V+W++LL 
Sbjct: 260 EEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLS 319

Query: 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKV 447
           + + Y + E+ EIA + L +  S   GD+VLLSN+Y++ ++W+   +VR+ M    ++K 
Sbjct: 320 SSRTYKNPELGEIAIQNLSKAKS---GDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKA 376

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK 507
            G S++E GG+IH+F   D SH++ + IY+ L+ ++ K K  G+ + T  VL D+ EEEK
Sbjct: 377 KGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEK 436

Query: 508 ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVR 567
           E  L YHSEKLA+A+ ++ +S  T I++ KN+R+C DCH+ IK +SK+ NR II+RDR+R
Sbjct: 437 EENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIR 496

Query: 568 FHRFKDGACSCKDYW 582
           FHRF+DG CSC+DYW
Sbjct: 497 FHRFEDGLCSCRDYW 511



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 127/241 (52%), Gaps = 5/241 (2%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH- 104
           IIE  +L  + E   A  + R  +  +   +N ++ G   + +   A+   + ML  +  
Sbjct: 81  IIE--SLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 138

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           + +  + + +L ACAR+  L     +HS ++  G   +A+L + L+DVYAK G+I ++++
Sbjct: 139 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSRE 198

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           VF  +   D++ WNA+I G A   LA+EA+ +F  M+ E V  P+ +T LG L  C H G
Sbjct: 199 VFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHV-SPDSITFLGLLTTCSHCG 257

Query: 225 AWKEGDKIHEYI-REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
             +EG +    + R   +   +    A++D+  + G + +A+E+ +++     +V W ++
Sbjct: 258 LLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSL 317

Query: 284 V 284
           +
Sbjct: 318 L 318


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 315/560 (56%), Gaps = 35/560 (6%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           Q+   +  +G F + +F V S +++ Y  S   +L+ A  +   +       +N+++ G 
Sbjct: 261 QVHGCIVRSG-FGANVF-VGSALVDMY--SKCGDLSNARRMLETMEVDDPVSWNSMIVGC 316

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
                   A+  +R M     + D  T    L   + V+ +   + +HS +++ GF A  
Sbjct: 317 VRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYK 376

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
           L+   L+D+YAK G    A  VF++M  +D+ SW +L+ G        EA+ LF  M++ 
Sbjct: 377 LVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 436

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
           G+  P+++ +   L+AC  L   + G ++H    +  L  ++ V N+++ MYAKCG ++ 
Sbjct: 437 GI-HPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 495

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A +VFD+++  + ++TW  +++ +A +G G                             +
Sbjct: 496 ANKVFDSMEI-QDVITWTALIVGYAQNGRGR----------------------------D 526

Query: 324 HAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           HAGLV+ G   F SM    G+KP  +HY  ++DLLGR+G+L EA +++  +++  D  +W
Sbjct: 527 HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVW 586

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
           + LL AC+++G+VE+ E A+  L E+   N   +VLLSNLY+A  +W++  + R+ MK R
Sbjct: 587 KALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLR 646

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            V K PG S+IE+   +H+F + D+SH +  EIY K+DEIM  IKE GY    +  LHD+
Sbjct: 647 GVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDM 706

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            EE KE  L YHSEKLAVAFGL++      I++FKNLRIC DCH  +K +S V++R +I+
Sbjct: 707 DEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVIL 766

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD   FH F++GACSC DYW
Sbjct: 767 RDSNCFHHFREGACSCSDYW 786



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 181/367 (49%), Gaps = 12/367 (3%)

Query: 23  KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAV 79
           KQ+ AH   T QF S  F V + +++ YA      +  A  LF    AP   +   + A+
Sbjct: 158 KQIHAHAIKT-QFDSNAFVV-TGLVDMYAKCKC--ILEAEYLFEL--APDKRNHVLWTAM 211

Query: 80  LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139
           + G + +     A+  +R M       +  T    L AC  + A     Q+H  ++R GF
Sbjct: 212 VTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGF 271

Query: 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199
            A+  +G+ L+D+Y+K G++ +A+++ + M V D  SWN++I G  +  L  EA+ LF+ 
Sbjct: 272 GANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRI 331

Query: 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259
           M +  + K +E T    L     +   +    +H  I +   +   +V NA++DMYAK G
Sbjct: 332 MHLRHM-KIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRG 390

Query: 260 LLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
             D AF+VF+ +   K +++W ++V     +G    AL LF +M   G+ PD +   A L
Sbjct: 391 YFDYAFDVFEKMT-DKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVL 449

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
            AC    +++ G ++  +    G+  ++    S+V +  + G +++A  +  S+ +  D+
Sbjct: 450 SACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEI-QDV 508

Query: 380 VLWQTLL 386
           + W  L+
Sbjct: 509 ITWTALI 515



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 167/345 (48%), Gaps = 7/345 (2%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           LNE   A  LF +    S   +++++ G         A+  + +M     R +  T    
Sbjct: 88  LNE---ARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSV 144

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD-EMGVRD 173
           L+ C+  + L +  QIH+H ++  F ++A + T L+D+YAK   I+ A+ +F+     R+
Sbjct: 145 LRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRN 204

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
              W A++ G +Q     +A++ F+ M+ EG+ + N+ T    L ACG + A   G ++H
Sbjct: 205 HVLWTAMVTGYSQNGDGHKAIECFRDMRGEGI-ECNQFTFPSILTACGSISACGFGAQVH 263

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
             I       NV V +A++DMY+KCG L  A  + + ++     V+WN+M++     G G
Sbjct: 264 GCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDP-VSWNSMIVGCVRQGLG 322

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             AL LF  M    +K D+ +Y + L   +    + + + + + +   G +       ++
Sbjct: 323 EEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNAL 382

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           VD+  + G    A D+ + ++   D++ W +L+  C   G  E A
Sbjct: 383 VDMYAKRGYFDYAFDVFEKMT-DKDVISWTSLVTGCVHNGSYEEA 426



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 125/243 (51%), Gaps = 2/243 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            T++  YA  G +  A+K+F E  +R   +W++LI+G  +     EA++LF  M+ EG  
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGE- 134

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
           +PN+ T    L  C      ++G +IH +  + + D N  V   ++DMYAKC  + +A  
Sbjct: 135 RPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEY 194

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +F+    +++ V W  MV  ++ +GDG +A+E F  M   G++ +  ++ + L AC    
Sbjct: 195 LFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSIS 254

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
               G ++   +   G   N+    ++VD+  + G L  A  +++++ +  D V W +++
Sbjct: 255 ACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEV-DDPVSWNSMI 313

Query: 387 GAC 389
             C
Sbjct: 314 VGC 316



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 31/206 (15%)

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCR------------------------------KSLV 278
           N V+   +KCG +D A ++FD +  R                              +S +
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           TW++++  +  +G    ALELF +M   G +P+  ++ + L  C+   L++ G ++    
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHA 164

Query: 339 ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
                  N      +VD+  +   + EA  + +      + VLW  ++      GD   A
Sbjct: 165 IKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKA 224

Query: 399 EIASRKLVEMGSNNCGDFVLLSNLYA 424
               R +   G   C  F   S L A
Sbjct: 225 IECFRDMRGEGI-ECNQFTFPSILTA 249


>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 203/580 (35%), Positives = 326/580 (56%), Gaps = 15/580 (2%)

Query: 8   LQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQ 67
           LQ C+   +VS  H   L++       F +  F     I  +  +   N+   A  LF +
Sbjct: 37  LQDCNDITSVSFSHTNVLKS------GFLNDTFTTNHLINSYVRIRRTND---ASQLFEE 87

Query: 68  INAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFET 127
           +  P+   F +++ G     +P +A+L + +ML      +A T +  + AC+ +  L   
Sbjct: 88  MREPNVISFTSLMAGFIKVGRPKSALLIFCKMLESWVLPNAFTFATVVNACSMLADLRTG 147

Query: 128 LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG 187
            +IHSHV   G   + ++ ++L+D+Y K   +  A++VFD M  R++ SW ++I    Q 
Sbjct: 148 QKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMDYRNVVSWTSMITAYGQN 207

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
            L   A+ LF+      +  PN   +   + AC  LG    G   H  +     + N VV
Sbjct: 208 ALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVAHAAVIRRGHESNDVV 267

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307
            +A++DMYAKCG +  + +VF  I    S++ + +M++  A +G G  +L++F++M    
Sbjct: 268 ASALVDMYAKCGCIGYSDKVFRRIP-DPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRR 326

Query: 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEA 366
           +KP+DV+++  L AC+H+GLVDDG+   +SM    GV P+ KHY  VVD+LGR GRL EA
Sbjct: 327 IKPNDVTFVGVLHACSHSGLVDDGLEYLHSMHKKHGVVPDTKHYTCVVDMLGRTGRLDEA 386

Query: 367 CDIVKSVSMGTDM--VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
             + KS+ +  D   +LW TLL A +LYG V++A  AS+ L+E        +V +SN YA
Sbjct: 387 HQLAKSIQVEPDQGALLWGTLLSASRLYGRVDIAVEASKWLIESNQQVAAAYVTMSNTYA 446

Query: 425 AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH-VKWREIYEKLDEIM 483
              +W++V  +R  MK+  V K PG S++E+    + F+  D S   +  E+   L E+ 
Sbjct: 447 MAGKWENVHSIRYEMKHYGVYKEPGCSWVEIRDSAYVFYAGDVSLCARGSEVASLLRELE 506

Query: 484 FKIKEYGYAAGTSCVLH-DIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542
            ++KE GY  G+  ++  D+ EE KE  +  HSE+LA+AFGLIS  +  +I+V KNLR+C
Sbjct: 507 RRMKERGYVGGSRGLVSIDVEEEAKEEIVGLHSERLALAFGLISIPKGVTIRVMKNLRMC 566

Query: 543 RDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RDCH+  KLIS++  R+ +VRD  RFH F++G+C+C+D+W
Sbjct: 567 RDCHEAFKLISEIVERDFVVRDVNRFHHFENGSCTCRDFW 606


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 190/544 (34%), Positives = 310/544 (56%), Gaps = 10/544 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           + + +I+ Y  S L  L  A  +F ++ +     + A++  L     P  AV  Y+ M  
Sbjct: 336 MNNSLIQMY--SSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMEL 393

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D +T    L ACA +  L   +++H   ++ G ++  ++  +L+D+Y+K   + +
Sbjct: 394 EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDN 453

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A +VF  +  +++ SW +LI GL   N + EA+  F++MK     KPN VT++  L+AC 
Sbjct: 454 ALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES--MKPNSVTLISVLSACA 511

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            +GA   G +IH +     +  +  + NA++DMY +CG    A   F++ K  K +  WN
Sbjct: 512 RIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK--KDVTAWN 569

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN- 340
            ++  +A  G    A+ELF++M    + PD++++++ LCAC+ +G+V +G+  FN M N 
Sbjct: 570 ILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNK 629

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + PN+KHY  VVD+LGRAG+L +A D ++ + +  D  +W  LL AC+++ +VE+ EI
Sbjct: 630 YNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEI 689

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A++++ E  + + G ++LL NLYA    WD V +VR  M+ R +   PG S++E+ G +H
Sbjct: 690 AAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVH 749

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F + D SH + +EI   LD    K+KE G+    S    +I E  + +  C HSE+ A+
Sbjct: 750 AFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEI-ESSRADIFCGHSERQAI 808

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AFGLI+T+    I V KNL +C  CH+++K IS +  REI VRD   +H FKDG CSC D
Sbjct: 809 AFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGD 868

Query: 581 --YW 582
             YW
Sbjct: 869 EGYW 872



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 172/323 (53%), Gaps = 3/323 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F +++      +N ++ G A +     A+  Y +ML    R +  T    LK CA V  
Sbjct: 154 VFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSD 213

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           +    +IH+HV+R GF +D  +G  L+ +Y K G+I +A+ +FD+M  RD  SWNA+I+G
Sbjct: 214 IARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISG 273

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             +     E ++LF  M+ E    P+ +T+    +AC  L   + G  +H Y+ +     
Sbjct: 274 YFENGGGLEGLELFSMMR-ELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGG 332

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           ++ + N++I MY+  G L++A  VF  ++  K +V+W  M+ +   H    +A+E ++ M
Sbjct: 333 DISMNNSLIQMYSSLGRLEEAETVFSRME-SKDVVSWTAMIASLVSHKLPFKAVETYKMM 391

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
              G+ PD+++ ++ L AC   G +D G+RL       G+  ++    S++D+  +   +
Sbjct: 392 ELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCV 451

Query: 364 QEACDIVKSVSMGTDMVLWQTLL 386
             A ++ +++S G ++V W +L+
Sbjct: 452 DNALEVFRNIS-GKNVVSWTSLI 473



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 123/249 (49%), Gaps = 13/249 (5%)

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           LG  LL ++ + G ++ A  VF +M  RD+ SWN L+ G A+     EA++L+ RM +  
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRM-LWA 192

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
             +PN  T    L  C  +     G +IH ++     + +V V NA+I MY KCG +  A
Sbjct: 193 EIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNA 252

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
             +FD +  ++  ++WN M+  +  +G G   LELF  M    V PD ++      AC  
Sbjct: 253 RMLFDKMP-KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE- 310

Query: 325 AGLVDD-----GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
             L+D+     GV  +   +  G   +M +  S++ +    GRL+EA + V S     D+
Sbjct: 311 --LLDNERLGRGVHGYVVKSEFGGDISMNN--SLIQMYSSLGRLEEA-ETVFSRMESKDV 365

Query: 380 VLWQTLLGA 388
           V W  ++ +
Sbjct: 366 VSWTAMIAS 374



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 148/368 (40%), Gaps = 71/368 (19%)

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV--FDEMGVRDIAS 176
            + L+  + LQ H H LR          T  + V   VG  VS   +     + +R++  
Sbjct: 27  PKTLSFSKNLQTHKHTLRK---------TQEISV---VGAAVSHSAIDQTQNLELRELC- 73

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
                    QGNL  +A+   + M +E   +  E   +  L  C    A  EG +++E +
Sbjct: 74  --------LQGNL-EQAMKRLESM-LELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELV 123

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
              +  + V + NA++ M+ + G L  A+ VF  +   + + +WN +V  +A  G    A
Sbjct: 124 SSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMS-ERDVFSWNVLVGGYAKAGCFDEA 182

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACN-----------HAGL--------VDDGVRLFNS 337
           L L+ +M  A ++P+  ++ + L  C            HA +        VD G  L   
Sbjct: 183 LNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITM 242

Query: 338 MANCGVKPNMKHYGSVVDLLGRAGRLQ------------------EACDIVKSVSMGTDM 379
              CG   N +    + D + +  R+                   E   +++ +S+  D+
Sbjct: 243 YVKCGDISNARM---LFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDL 299

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL---LSNLYAAYERWDDVGRVR 436
           +   T+  AC+L  +  +       +V+  S   GD  +   L  +Y++  R ++   V 
Sbjct: 300 ITMTTVASACELLDNERLGRGVHGYVVK--SEFGGDISMNNSLIQMYSSLGRLEEAETVF 357

Query: 437 KAMKNRDV 444
             M+++DV
Sbjct: 358 SRMESKDV 365


>gi|125578382|gb|EAZ19528.1| hypothetical protein OsJ_35094 [Oryza sativa Japonica Group]
          Length = 591

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 176/434 (40%), Positives = 274/434 (63%), Gaps = 12/434 (2%)

Query: 159 IVSAKKVFDEMGVRDIASWNALIAGLAQ--------GNLASEAV-DLFKRMKMEGVFKPN 209
           I S ++VFD +   D+ +WNAL++  A+           A++A+ +LF RM +    +PN
Sbjct: 160 IASCRRVFDGIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRM-LSLAIEPN 218

Query: 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFD 269
           E+T++  + ACG LGA   G   H Y  + RL +N +V  A+++MYA CG LD A +VF 
Sbjct: 219 EITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFA 278

Query: 270 NIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329
               R +   +N M+   AVHG G  AL L ++M  AGV  D V+ L+ +CAC HAGLVD
Sbjct: 279 AASDRDTRC-YNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVD 337

Query: 330 DGVRLFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
           +G+  F+ M    G++P ++HYG ++D+L RAGRL  A  ++  + +  +  ++++L+ A
Sbjct: 338 EGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRA 397

Query: 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448
           C ++G +E+ E    +L+ +  ++ G+ VL+SN YA   RW+D  + RK MK+  + K P
Sbjct: 398 CGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNP 457

Query: 449 GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKE 508
           G S +++ GV+H+F   DK+H   +EIY  ++EI  ++ E G  + TS  L D+ EE+K 
Sbjct: 458 GSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKA 517

Query: 509 NALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRF 568
           + L YHSE+LA+AF LI+++    I++ KNLR+C DCH+  KL+S+VY REI++RDR RF
Sbjct: 518 DTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRF 577

Query: 569 HRFKDGACSCKDYW 582
           H F+DG CSC D+W
Sbjct: 578 HHFRDGVCSCGDFW 591



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 128/271 (47%), Gaps = 25/271 (9%)

Query: 58  LAYAHALFRQINAPSTNDFNAVL--------RGLAHSSKPTNAVL-WYRQMLRGSHRSDA 108
           +A    +F  I  P    +NA+L        R +A ++   +A+L  + +ML  +   + 
Sbjct: 160 IASCRRVFDGIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNE 219

Query: 109 LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE 168
           +T    + AC  + A+   +  H++ ++     + ++ T L+++YA  G +  A++VF  
Sbjct: 220 ITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAA 279

Query: 169 MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
              RD   +NA++ GLA       A+ L  RM   GV   + VTVL  + AC H G   E
Sbjct: 280 ASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGV-PVDGVTVLSVMCACAHAGLVDE 338

Query: 229 G----DKIH-EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
           G    D++  E+  E R++        +IDM ++ G L+ A ++   +    +   + ++
Sbjct: 339 GLDYFDRMEIEFGIEPRIEHY----GCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSL 394

Query: 284 VMAFAVHGDGPRALELFEQM--GRAGVKPDD 312
           + A  +HG     LEL E+M      ++PDD
Sbjct: 395 IRACGIHGK----LELGEKMIAELMRLEPDD 421


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 181/500 (36%), Positives = 291/500 (58%), Gaps = 3/500 (0%)

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
           A S++   A   + +++R S   +  + S  L+AC  ++ L    QIH+H ++ G  +D 
Sbjct: 321 AQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDL 380

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            +G  L+D YAK  ++ S+ K+F  +   +  SWN ++ G +Q  L  EA+ +F  M+  
Sbjct: 381 FVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQ-A 439

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
                 +VT    L AC    + +   +IH  I +   + + V+ N++ID YAKCG +  
Sbjct: 440 AQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRD 499

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A +VF ++   + +++WN ++  +A+HG    ALELF++M ++ V+ +D++++A L  C 
Sbjct: 500 ALKVFQHLM-ERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCC 558

Query: 324 HAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
             GLV+ G+ LF+SM  + G+KP+M+HY  +V LLGRAGRL +A   +  +      ++W
Sbjct: 559 STGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVW 618

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
           + LL +C ++ +V +   ++ K++E+   +   +VLLSN+YAA    D V  +RK+M+N 
Sbjct: 619 RALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNI 678

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            V+KVPG S++E+ G IH F      H   R I   L+ +  K    GY    + VLHD+
Sbjct: 679 GVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDV 738

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            +E+K   L  HSE+LA+A+GL+ T     I++ KNLR C DCH    +ISK+  REIIV
Sbjct: 739 DKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIV 798

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFH F+DG CSC DYW
Sbjct: 799 RDINRFHHFEDGKCSCGDYW 818



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 4/184 (2%)

Query: 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLA--DALLGTTLLDVYAKVGEIVSAKK 164
           D+  C+  L+ C           +H HV+R G +   D      LL++Y K+G + SA++
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           +FD M  R++ S+  L+   AQ      A  LF+R++ EG  + N+  +   L     + 
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEG-HEVNQFVLTTMLKLAIAMD 176

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMV 284
           A      +H    +   D N  V + +ID Y+ C L+  A  VF+ I  RK  V W  MV
Sbjct: 177 AAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGI-VRKDAVVWTAMV 235

Query: 285 MAFA 288
             ++
Sbjct: 236 SCYS 239



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 140/332 (42%), Gaps = 22/332 (6%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           L  LA A  LF ++   +   F  +++  A       A   +R++    H  +    +  
Sbjct: 109 LGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTM 168

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           LK    + A      +HS   + G   +A +G+ L+D Y+    +  A+ VF+ +  +D 
Sbjct: 169 LKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDA 228

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
             W A+++  ++ +              E  F+  +   L A+ +C   G       IH 
Sbjct: 229 VVWTAMVSCYSENDCP------------ENAFRCAQSCSLLAI-SCARQG-------IHG 268

Query: 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGP 294
              +   D    V  A++DMYAKCG +  A   F+ I     ++  + M+  +A      
Sbjct: 269 CAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIP-YDDVILLSFMISRYAQSNQNE 327

Query: 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
           +A ELF ++ R+ V P++ S  + L AC +   +D G ++ N     G + ++    +++
Sbjct: 328 QAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALM 387

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           D   +   +  +  I  S+    + V W T++
Sbjct: 388 DFYAKCNDMDSSLKIFSSLRDANE-VSWNTIV 418


>gi|413923546|gb|AFW63478.1| hypothetical protein ZEAMMB73_625657 [Zea mays]
          Length = 489

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 192/490 (39%), Positives = 310/490 (63%), Gaps = 5/490 (1%)

Query: 96  YRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK 155
           Y  ML    R D+ T  FALKACA++ AL E  Q+ +H+++ GF  D  +  +L+  Y K
Sbjct: 2   YVDMLEAGVRPDSYTFPFALKACAQLAALQEGRQLQAHIVKLGFQHDEHVQNSLISFYGK 61

Query: 156 VGEIVSAKKVFD--EMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213
             E   A+  FD  E   R  ASW+AL+A   +  L  E ++ F  M ++G ++P+E + 
Sbjct: 62  CVEPAMARLAFDRVEAEERTAASWSALLAAYTKAGLWGECLESFGAMVLDG-WRPDESST 120

Query: 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273
           + AL+AC HLGA+  G  +H  +      +N ++  +++DMYAKCG ++KA  VFD +  
Sbjct: 121 VSALSACAHLGAFDVGRSLHCALLRNTARLNTIMQTSLVDMYAKCGSIEKAAAVFDAMD- 179

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
            K+  T++ M+   A+HGDG +AL++F+ M R    PD  +Y+  L AC+ AGL++DG+R
Sbjct: 180 DKNAWTYSAMLSGLALHGDGRKALQVFDAMVRERHAPDAATYVGVLNACSRAGLLEDGLR 239

Query: 334 LFNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392
            F+ M     V PN ++YG +VDL+ RAGRL +A  ++ S+S G     W++LL AC+++
Sbjct: 240 CFDRMRLEHNVAPNAQYYGCMVDLMARAGRLDDARALIGSMSTGPTDTAWRSLLNACRIH 299

Query: 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSY 452
           GD+++AE A ++L  +G+ N GD+V++++++A  + W    ++R    +  + + PG S 
Sbjct: 300 GDLDLAERALQELRRLGAANAGDYVIVADMHARAKDWAAAAQLRTEAVDWGLAQSPGVSA 359

Query: 453 IEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALC 512
           +EV G +H+F + D+SH +  +IYE L ++ ++++  GY   TS V  D+GEEEK   + 
Sbjct: 360 VEVRGELHRFVSQDRSHPRTSDIYEMLHQMEWQLRFDGYKPDTSEVALDVGEEEKRRVVA 419

Query: 513 YHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
            HS+KLA+AFGL+ST+E   +++  NLR+ ++CH    LIS+++ REI++RDR R HRF+
Sbjct: 420 AHSQKLAMAFGLLSTAEGAPVRIVTNLRMSKECHAYSALISEIFGREIVIRDRNRLHRFR 479

Query: 573 DGACSCKDYW 582
            G CSC+DYW
Sbjct: 480 RGVCSCRDYW 489



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 6/143 (4%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           +++ +++ YA      +  A A+F  ++  +   ++A+L GLA       A+  +  M+R
Sbjct: 154 MQTSLVDMYA--KCGSIEKAAAVFDAMDDKNAWTYSAMLSGLALHGDGRKALQVFDAMVR 211

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHV-LRHGFLADALLGTTLLDVYAKVGEIV 160
             H  DA T    L AC+R   L + L+    + L H    +A     ++D+ A+ G + 
Sbjct: 212 ERHAPDAATYVGVLNACSRAGLLEDGLRCFDRMRLEHNVAPNAQYYGCMVDLMARAGRLD 271

Query: 161 SAKKVFDEM--GVRDIASWNALI 181
            A+ +   M  G  D A W +L+
Sbjct: 272 DARALIGSMSTGPTDTA-WRSLL 293


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 198/519 (38%), Positives = 301/519 (57%), Gaps = 13/519 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++AV+ G A       A+  +RQML      + +T    L  CA    L    + H H +
Sbjct: 354 WSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAI 413

Query: 136 R-------HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD--IASWNALIAGLAQ 186
           +       +    D ++   L+D+Y+K     +A+ +FD +  +D  + +W  LI G AQ
Sbjct: 414 KWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQ 473

Query: 187 GNLASEAVDLFKRM-KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
              A+EA++LF +M + +    PN  T+  AL AC  LGA + G +IH Y+   R +  +
Sbjct: 474 HGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAM 533

Query: 246 V-VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + V N +IDMY+K G +D A  VFDN+  R   V+W +++  + +HG G  AL++F +M 
Sbjct: 534 LFVANCLIDMYSKSGDVDAARVVFDNMHQRNG-VSWTSLMTGYGMHGRGEEALQIFYEMQ 592

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRL 363
           +  + PD V+++  L AC+H+G+VD G+  FN M  + GV P  +HY  +VDLL RAGRL
Sbjct: 593 KVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRL 652

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            EA ++++ + M     +W  LL AC++Y +VE+ E A+ +L+E+ S N G + LLSN+Y
Sbjct: 653 DEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIY 712

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A    W DV R+R  MKN  +KK PG S+++       FF  D SH   ++IY+ L ++M
Sbjct: 713 ANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLM 772

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            +IK  GY       LHD+ +EEK + L  HSEKLA+A+G+++T+    I++ KNLR C 
Sbjct: 773 QRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACG 832

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH     IS +   EIIVRD  RFH FK+G+CSC+ YW
Sbjct: 833 DCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 173/325 (53%), Gaps = 8/325 (2%)

Query: 44  SKIIEFYALSPLNELAYAHALFRQINAPSTNDF--NAVLRGLAHSSKPTNAVLWYRQMLR 101
           + II  Y     N  A A ++ R+++  S   F  N ++R   H     + +  YR+M R
Sbjct: 81  THIISMYLT--FNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQR 138

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              R D  T  F LKAC  + +      +H+ V   GF  +  +G  L+ +Y + G   +
Sbjct: 139 LGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWEN 198

Query: 162 AKKVFDEM---GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218
           A++VFDEM   GV D+ SWN+++A   QG  +  A+ +F+RM  +   +P+ V+++  L 
Sbjct: 199 ARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLP 258

Query: 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278
           AC  +GAW  G ++H Y     L  +V V NAV+DMYAKCG++++A +VF+ +K  K +V
Sbjct: 259 ACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKV-KDVV 317

Query: 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338
           +WN MV  ++  G    AL LFE++    ++ + V++ A +      GL  + + +F  M
Sbjct: 318 SWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 377

Query: 339 ANCGVKPNMKHYGSVVDLLGRAGRL 363
             CG +PN+    S++     AG L
Sbjct: 378 LLCGSEPNVVTLVSLLSGCASAGTL 402



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 126/261 (48%), Gaps = 10/261 (3%)

Query: 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM--GVRDIASWNALIAGLAQGN 188
           H  +L  G   D    T ++ +Y        A  V   +      +  WN LI       
Sbjct: 68  HQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLG 124

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
              + + L++RM+  G ++P+  T    L ACG + +++ G  +H  +     + NV V 
Sbjct: 125 FLEDVLQLYRRMQRLG-WRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVG 183

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRK--SLVTWNTMVMAFAVHGDGPRALELFEQMGR- 305
           N ++ MY +CG  + A +VFD ++ R    LV+WN++V A+   GD  RA+++FE+M   
Sbjct: 184 NGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTED 243

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            G++PD VS +  L AC   G    G ++       G+  ++    +VVD+  + G ++E
Sbjct: 244 LGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEE 303

Query: 366 ACDIVKSVSMGTDMVLWQTLL 386
           A  + + + +  D+V W  ++
Sbjct: 304 ANKVFERMKV-KDVVSWNAMV 323


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 190/544 (34%), Positives = 310/544 (56%), Gaps = 10/544 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           + + +I+ Y  S L  L  A  +F ++ +     + A++  L     P  AV  Y+ M  
Sbjct: 336 MNNSLIQMY--SSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMEL 393

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D +T    L ACA +  L   +++H   ++ G ++  ++  +L+D+Y+K   + +
Sbjct: 394 EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDN 453

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A +VF  +  +++ SW +LI GL   N + EA+  F++MK     KPN VT++  L+AC 
Sbjct: 454 ALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES--MKPNSVTLISVLSACA 511

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            +GA   G +IH +     +  +  + NA++DMY +CG    A   F++ K  K +  WN
Sbjct: 512 RIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK--KDVTAWN 569

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN- 340
            ++  +A  G    A+ELF++M    + PD++++++ LCAC+ +G+V +G+  FN M N 
Sbjct: 570 ILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNK 629

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + PN+KHY  VVD+LGRAG+L +A D ++ + +  D  +W  LL AC+++ +VE+ EI
Sbjct: 630 YNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEI 689

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A++++ E  + + G ++LL NLYA    WD V +VR  M+ R +   PG S++E+ G +H
Sbjct: 690 AAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVH 749

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F + D SH + +EI   LD    K+KE G+    S    +I E  + +  C HSE+ A+
Sbjct: 750 AFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEI-ESSRADIFCGHSERQAI 808

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
           AFGLI+T+    I V KNL +C  CH+++K IS +  REI VRD   +H FKDG CSC D
Sbjct: 809 AFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGD 868

Query: 581 --YW 582
             YW
Sbjct: 869 EGYW 872



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 172/323 (53%), Gaps = 3/323 (0%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F +++      +N ++ G A +     A+  Y +ML    R +  T    LK CA V  
Sbjct: 154 VFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSD 213

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           +    +IH+HV+R GF +D  +G  L+ +Y K G+I +A+ +FD+M  RD  SWNA+I+G
Sbjct: 214 IARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISG 273

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             +     E ++LF  M+ E    P+ +T+    +AC  L   + G  +H Y+ +     
Sbjct: 274 YFENGGGLEGLELFSMMR-ELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGG 332

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           ++ + N++I MY+  G L++A  VF  ++  K +V+W  M+ +   H    +A+E ++ M
Sbjct: 333 DISMNNSLIQMYSSLGRLEEAETVFSRME-SKDVVSWTAMIASLVSHKLPFKAVETYKMM 391

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
              G+ PD+++ ++ L AC   G +D G+RL       G+  ++    S++D+  +   +
Sbjct: 392 ELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCV 451

Query: 364 QEACDIVKSVSMGTDMVLWQTLL 386
             A ++ +++S G ++V W +L+
Sbjct: 452 DNALEVFRNIS-GKNVVSWTSLI 473



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 123/249 (49%), Gaps = 13/249 (5%)

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           LG  LL ++ + G ++ A  VF +M  RD+ SWN L+ G A+     EA++L+ RM +  
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRM-LWA 192

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
             +PN  T    L  C  +     G +IH ++     + +V V NA+I MY KCG +  A
Sbjct: 193 EIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNA 252

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
             +FD +  ++  ++WN M+  +  +G G   LELF  M    V PD ++      AC  
Sbjct: 253 RMLFDKMP-KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE- 310

Query: 325 AGLVDD-----GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379
             L+D+     GV  +   +  G   +M +  S++ +    GRL+EA + V S     D+
Sbjct: 311 --LLDNERLGRGVHGYVVKSEFGGDISMNN--SLIQMYSSLGRLEEA-ETVFSRMESKDV 365

Query: 380 VLWQTLLGA 388
           V W  ++ +
Sbjct: 366 VSWTAMIAS 374



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 148/368 (40%), Gaps = 71/368 (19%)

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV--FDEMGVRDIAS 176
            + L+  + LQ H H LR          T  + V   VG  VS   +     + +R++  
Sbjct: 27  PKTLSFSKNLQTHKHTLRK---------TQEISV---VGAAVSHSAIDQTQNLELRELC- 73

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
                    QGNL  +A+   + M +E   +  E   +  L  C    A  EG +++E +
Sbjct: 74  --------LQGNL-EQAMKRLESM-LELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELV 123

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
              +  + V + NA++ M+ + G L  A+ VF  +   + + +WN +V  +A  G    A
Sbjct: 124 SSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMS-ERDVFSWNVLVGGYAKAGCFDEA 182

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACN-----------HAGL--------VDDGVRLFNS 337
           L L+ +M  A ++P+  ++ + L  C            HA +        VD G  L   
Sbjct: 183 LNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITM 242

Query: 338 MANCGVKPNMKHYGSVVDLLGRAGRLQ------------------EACDIVKSVSMGTDM 379
              CG   N +    + D + +  R+                   E   +++ +S+  D+
Sbjct: 243 YVKCGDISNARM---LFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDL 299

Query: 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL---LSNLYAAYERWDDVGRVR 436
           +   T+  AC+L  +  +       +V+  S   GD  +   L  +Y++  R ++   V 
Sbjct: 300 ITMTTVASACELLDNERLGRGVHGYVVK--SEFGGDISMNNSLIQMYSSLGRLEEAETVF 357

Query: 437 KAMKNRDV 444
             M+++DV
Sbjct: 358 SRMESKDV 365


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 176/439 (40%), Positives = 270/439 (61%), Gaps = 3/439 (0%)

Query: 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           +   L+D YAK+    +A+ +FDEM  RD+ +W +L+ GLA+      A+ +++ M   G
Sbjct: 79  VANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMVASG 138

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
           V +P+E  V  AL++C      + G  +H       L+  + V N+++ MYAK G L +A
Sbjct: 139 V-EPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREA 197

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
            +VFD  + R   VTW  +++ +A +G G  +L+++ +M  +G +PD V+++  L AC+H
Sbjct: 198 RKVFDATRLR-CPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSH 256

Query: 325 AGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
           AGLVD G   F SM A+ G+ P   HY  +VD+LGRAGRL EA +++   +M  D  +W+
Sbjct: 257 AGLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWK 316

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443
            LLGAC+ + + E+AE A+  +  +   +   +++LSNLY+   RW DV R+R  MK+R 
Sbjct: 317 ALLGACRTHRNAELAERAAEMVWRLDPTDAVPYIMLSNLYSRERRWSDVARIRTLMKSRG 376

Query: 444 VKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIG 503
           + K PG S++   GV H F+  D+ H +  EIY K++E+M K++  G+ A T   L D  
Sbjct: 377 IAKEPGCSWVVASGVTHLFYVEDRGHPRTDEIYRKVEEMMEKVRAEGFVADTDWALQDEA 436

Query: 504 EEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVR 563
            E +E  L +HSE+LAVAFGL++      ++VFKNLR+C DCH  IK+++KVY REII+R
Sbjct: 437 PEGREKGLAHHSERLAVAFGLLALPAGAPVRVFKNLRVCGDCHVAIKMVAKVYGREIILR 496

Query: 564 DRVRFHRFKDGACSCKDYW 582
           D   FH  +DG CSC DYW
Sbjct: 497 DSNCFHHMRDGVCSCGDYW 515



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 125/280 (44%), Gaps = 13/280 (4%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V + +++ YA   L+    A ALF ++       + ++L GLA S     A+  YR M+ 
Sbjct: 79  VANALVDAYA--KLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMVA 136

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D    + AL +CA    L     +H+  +R G      +G +L+ +YAK G +  
Sbjct: 137 SGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLRE 196

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+KVFD   +R   +W ALI G AQ     E++ ++  M   G  +P+ VT +G L AC 
Sbjct: 197 ARKVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGC-RPDYVTFIGLLFACS 255

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCN----AVIDMYAKCGLLDKAFEVFDNIKCRKSL 277
           H G    G     + +  + D  +         ++D+  + G LD+A E+ D    +   
Sbjct: 256 HAGLVDAG---RAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDA 312

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYL 316
             W  ++ A   H +   A    E + R  + P D V Y+
Sbjct: 313 TVWKALLGACRTHRNAELAERAAEMVWR--LDPTDAVPYI 350



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 2/211 (0%)

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           ++NA I+  ++  L   A+ LF  M+       +E T    L +   L      D +H  
Sbjct: 8   AYNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAADALHAL 67

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           +    L  ++ V NA++D YAK      A  +FD +  R+ +VTW +++   A  G    
Sbjct: 68  LLRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMP-RRDVVTWTSLLTGLARSGSHDA 126

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           AL ++  M  +GV+PD+    AAL +C  +  ++ G  +  +    G++P +    S+V 
Sbjct: 127 ALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVS 186

Query: 356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           +  + G L+EA  +  +  +    V W  L+
Sbjct: 187 MYAKTGSLREARKVFDATRLRCP-VTWTALI 216


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 198/519 (38%), Positives = 301/519 (57%), Gaps = 13/519 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++AV+ G A       A+  +RQM       + +T    L  CA    L    + H H +
Sbjct: 335 WSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAI 394

Query: 136 R-------HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD--IASWNALIAGLAQ 186
           +       +    D ++   L+D+Y+K     +A+ +FD +  +D  + +W  LI G AQ
Sbjct: 395 KWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQ 454

Query: 187 GNLASEAVDLFKRM-KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
              A+EA++LF +M + +    PN  T+  AL AC  LGA + G +IH Y+   R +  +
Sbjct: 455 HGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAM 514

Query: 246 V-VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
           + V N +IDMY+K G +D A  VFDN+  R   V+W +++  + +HG G  AL++F +M 
Sbjct: 515 LFVANCLIDMYSKSGDVDAARVVFDNMHQRNG-VSWTSLMTGYGMHGRGEEALQIFYEMQ 573

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRL 363
           + G+ PD V+++  L AC+H+G+VD G+  FN M  + GV P  +HY  +VDLL RAGRL
Sbjct: 574 KVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRL 633

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423
            EA ++++ + M     +W  LL AC++Y +VE+ E A+ +L+E+ S N G + LLSN+Y
Sbjct: 634 DEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIY 693

Query: 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483
           A    W DV R+R  MKN  +KK PG S+++       FF  D SH   ++IY+ L ++M
Sbjct: 694 ANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLM 753

Query: 484 FKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICR 543
            +IK  GY       LHD+ +EEK + L  HSEKLA+A+G+++T+    I++ KNLR C 
Sbjct: 754 QRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACG 813

Query: 544 DCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           DCH     IS +   EIIVRD  RFH FK+G+CSC+ YW
Sbjct: 814 DCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 184/364 (50%), Gaps = 18/364 (4%)

Query: 5   NALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHAL 64
           + L  +C S  +   IH + L   L              + II  Y     N  A A ++
Sbjct: 33  STLFHQCKSLASAELIHQQLLVQGLPHD----------PTHIISMYLT--FNSPAKALSV 80

Query: 65  FRQINAPSTNDF--NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
            R+++  S   F  N ++R   H     + +  YR+M R   R D  T  F LKAC  + 
Sbjct: 81  LRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIP 140

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---GVRDIASWNA 179
           +      +H+ V   GF  +  +G  L+ +Y + G   +A++VFDEM   GV D+ SWN+
Sbjct: 141 SFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNS 200

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           ++A   QG  +  A+ +F+RM  +   +P+ V+++  L AC  +GAW  G ++H Y    
Sbjct: 201 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 260

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            L  +V V NAV+DMYAKCG++++A +VF+ +K  K +V+WN MV  ++  G    AL L
Sbjct: 261 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKV-KDVVSWNAMVTGYSQIGRFDDALGL 319

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           FE++    ++ + V++ A +      GL  + + +F  M  CG +PN+    S++     
Sbjct: 320 FEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCAL 379

Query: 360 AGRL 363
           AG L
Sbjct: 380 AGTL 383



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 127/262 (48%), Gaps = 10/262 (3%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM--GVRDIASWNALIAGLAQG 187
           IH  +L  G   D    T ++ +Y        A  V   +      +  WN LI      
Sbjct: 48  IHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHL 104

Query: 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247
               + + L++RM+  G ++P+  T    L ACG + +++ G  +H  +     + NV V
Sbjct: 105 GFLEDVLQLYRRMQRLG-WRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFV 163

Query: 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRK--SLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
            N ++ MY +CG  + A +VFD ++ R    LV+WN++V A+   GD  RA+++FE+M  
Sbjct: 164 GNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTE 223

Query: 306 -AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364
             G++PD VS +  L AC   G    G ++       G+  ++    +VVD+  + G ++
Sbjct: 224 DLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMME 283

Query: 365 EACDIVKSVSMGTDMVLWQTLL 386
           EA  + + + +  D+V W  ++
Sbjct: 284 EANKVFERMKV-KDVVSWNAMV 304


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 197/536 (36%), Positives = 315/536 (58%), Gaps = 14/536 (2%)

Query: 58  LAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           L+ A  +FR++      D   +NA++       +   AV  +R+M+R   + D  T +  
Sbjct: 190 LSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASV 249

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK-VGEIVSAKKVFDEMGVRD 173
           L A   V  L    Q H  +++ GF  ++ +G+ L+D+Y+K  G +V  +KVF+E+   D
Sbjct: 250 LTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPD 309

Query: 174 IASWNALIAGLA-QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           +  WN +I+G +   +L+ + +  F+ M+  G F+P++ + +   +AC +L +   G ++
Sbjct: 310 LVLWNTMISGFSLYEDLSEDGLWCFREMQRNG-FRPDDCSFVCVTSACSNLSSPSLGKQV 368

Query: 233 HEYIREERLDMN-VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG 291
           H    +  +  N V V NA++ MY+KCG +  A  VFD +    + V+ N+M+  +A HG
Sbjct: 369 HALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNTVSLNSMIAGYAQHG 427

Query: 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPNMKH 349
               +L LFE M    + P+ ++++A L AC H G V++G + FN M    C ++P  +H
Sbjct: 428 VEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFC-IEPEAEH 486

Query: 350 YGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409
           Y  ++DLLGRAG+L+EA  I++++      + W TLLGAC+ +G+VE+A  A+ + + + 
Sbjct: 487 YSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLE 546

Query: 410 SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSH 469
             N   +V+LSN+YA+  RW++   V++ M+ R VKK PG S+IE+   +H F   D SH
Sbjct: 547 PYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSH 606

Query: 470 VKWREIYEKLDEIMFKIKEYGYAAGTSCVL---HDIGEEEKENALCYHSEKLAVAFGLIS 526
              +EI+  + +++ K+K+ GY       L    ++  +E+E  L YHSEKLAVAFGLIS
Sbjct: 607 PMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLIS 666

Query: 527 TSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           T E   I V KNLRIC DCH+ +KLIS +  REI VRD  RFH FK+G CSC+DYW
Sbjct: 667 TEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 143/323 (44%), Gaps = 22/323 (6%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           L  KC S      +H  Q   HLT      S      + +I  YA   L  +  A  +F 
Sbjct: 53  LYSKCGS------LHNAQTSFHLTQYPNVFSY-----NTLINAYAKHSL--IHIARRVFD 99

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
           +I  P    +N ++   A   +    +  + ++       D  T S  + AC   + L  
Sbjct: 100 EIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGDDVGLVR 159

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV---RDIASWNALIAG 183
             Q+H  V+  G    A +   +L  Y++ G +  A++VF EMG    RD  SWNA+I  
Sbjct: 160 --QLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVA 217

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
             Q     EAV LF+ M   G+ K +  T+   L A   +     G + H  + +     
Sbjct: 218 CGQHREGMEAVGLFREMVRRGL-KVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHG 276

Query: 244 NVVVCNAVIDMYAKC-GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD-GPRALELFE 301
           N  V + +ID+Y+KC G + +  +VF+ I     LV WNTM+  F+++ D     L  F 
Sbjct: 277 NSHVGSGLIDLYSKCAGSMVECRKVFEEITA-PDLVLWNTMISGFSLYEDLSEDGLWCFR 335

Query: 302 QMGRAGVKPDDVSYLAALCACNH 324
           +M R G +PDD S++    AC++
Sbjct: 336 EMQRNGFRPDDCSFVCVTSACSN 358



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 125/253 (49%), Gaps = 11/253 (4%)

Query: 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207
           TL++ YAK   I  A++VFDE+   DI S+N LIA  A        + LF+ ++ E    
Sbjct: 80  TLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVR-ELRLG 138

Query: 208 PNEVTVLGALAACG-HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            +  T+ G + ACG  +G  ++   +H ++     D    V NAV+  Y++ G L +A  
Sbjct: 139 LDGFTLSGVITACGDDVGLVRQ---LHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARR 195

Query: 267 VFDNI--KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
           VF  +     +  V+WN M++A   H +G  A+ LF +M R G+K D  +  + L A   
Sbjct: 196 VFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTC 255

Query: 325 AGLVDDGVRLFNSMANCGVKPNMKHYGS-VVDLLGR-AGRLQEACDIVKSVSMGTDMVLW 382
              +  G +    M   G   N  H GS ++DL  + AG + E   + + ++   D+VLW
Sbjct: 256 VKDLVGGRQFHGMMIKSGFHGN-SHVGSGLIDLYSKCAGSMVECRKVFEEIT-APDLVLW 313

Query: 383 QTLLGACQLYGDV 395
            T++    LY D+
Sbjct: 314 NTMISGFSLYEDL 326


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 198/542 (36%), Positives = 308/542 (56%), Gaps = 20/542 (3%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V++ +I+ Y      ++ YA  +F +I + +   +NA++ G+    K             
Sbjct: 262 VQTSLIDMYG--KCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVI----------- 308

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
                D +T    L +C++  AL E   IH   +R  FL   +L T L+D+Y K GE+  
Sbjct: 309 ----PDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKL 364

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           A+ VF++M  +++ SWN ++A   Q     EA+ +F+ +  E + KP+ +T+   L A  
Sbjct: 365 AEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPL-KPDAITIASVLPAVA 423

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L +  EG +IH YI +  L  N  + NA++ MYAKCG L  A E FD + C K +V+WN
Sbjct: 424 ELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVC-KDVVSWN 482

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-AN 340
           TM+MA+A+HG G  +++ F +M   G KP+  ++++ L AC+ +GL+D+G   FNSM   
Sbjct: 483 TMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVE 542

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
            G+ P ++HYG ++DLLGR G L EA   ++ + +     +W +LL A + + DV +AE+
Sbjct: 543 YGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAEL 602

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
           A+R ++ +  +N G +VLLSN+YA   RW+DV R++  MK + + K  G S +++ G   
Sbjct: 603 AARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSE 662

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F   D+SH     IY+ LD ++ KI E  Y    +        +++ N+  YHS KLA+
Sbjct: 663 SFINQDRSHAHTNLIYDVLDILLKKIGEDIYLHSLTKFRPLDVAKKRGNSPEYHSVKLAI 722

Query: 521 AFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
            FGLIST+    + V KN RIC DCH   K IS+V  REI+V D   FH F+DG CSC+D
Sbjct: 723 CFGLISTAIGNPVIVRKNTRICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRD 782

Query: 581 YW 582
           YW
Sbjct: 783 YW 784



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 163/325 (50%), Gaps = 18/325 (5%)

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           +F ++N   T  +N ++RG  ++     A+ +Y +M     RSD  T  F +KAC  +LA
Sbjct: 80  MFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLA 139

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           L    ++H  +++ GF  D  +   L+D+Y K+G I  A+KVFDEM VRD+ SWN++++G
Sbjct: 140 LMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSG 199

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
                    ++  FK M   G  K +   ++ AL AC      + G +IH  +    L++
Sbjct: 200 YQIDGDGLSSLMCFKEMLRLGN-KADRFGMISALGACSIEHCLRSGMEIHCQVIRSELEL 258

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           +++V  ++IDMY KCG +D A  VF+ I   K++V WN M+                   
Sbjct: 259 DIMVQTSLIDMYGKCGKVDYAERVFNRIY-SKNIVAWNAMIGGMQEDDK----------- 306

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
               V PD ++ +  L +C+ +G + +G  +          P +    ++VD+ G+ G L
Sbjct: 307 ----VIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGEL 362

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGA 388
           + A  +   ++   +MV W T++ A
Sbjct: 363 KLAEHVFNQMN-EKNMVSWNTMVAA 386



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 168/333 (50%), Gaps = 18/333 (5%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++       +N+++ G        ++++ +++MLR  +++D      AL AC+ 
Sbjct: 178 AEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSI 237

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
              L   ++IH  V+R     D ++ T+L+D+Y K G++  A++VF+ +  ++I +WNA+
Sbjct: 238 EHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAM 297

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G                M+ +    P+ +T++  L +C   GA  EG  IH +   + 
Sbjct: 298 IGG----------------MQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKM 341

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
               +V+  A++DMY KCG L  A  VF+ +   K++V+WNTMV A+  +     AL++F
Sbjct: 342 FLPYLVLETALVDMYGKCGELKLAEHVFNQMN-EKNMVSWNTMVAAYVQNEQYKEALKMF 400

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360
           + +    +KPD ++  + L A        +G ++ + +   G+  N     ++V +  + 
Sbjct: 401 QHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKC 460

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           G LQ A +    + +  D+V W T++ A  ++G
Sbjct: 461 GDLQTAREFFDGM-VCKDVVSWNTMIMAYAIHG 492



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 147/315 (46%), Gaps = 23/315 (7%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +NA        +KP  A  + R+  R S          + K  AR   L  T  +     
Sbjct: 11  YNAYKNASPEQNKPPKAAQFKRKTTRKSPFIKRAQSKTSFKPLARPNDLNITRDLC---- 66

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
             GF+   L+G  L               +F++M   D   WN +I G     L  EA+D
Sbjct: 67  --GFVESGLMGNAL--------------DMFEKMNHSDTFIWNVIIRGYTNNGLFQEAID 110

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
            + RM+ EG+ + +  T    + ACG L A   G K+H  + +   D++V VCN +IDMY
Sbjct: 111 FYYRMECEGI-RSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMY 169

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
            K G ++ A +VFD +  R  LV+WN+MV  + + GDG  +L  F++M R G K D    
Sbjct: 170 LKIGFIELAEKVFDEMPVR-DLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGM 228

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
           ++AL AC+    +  G+ +   +    ++ ++    S++D+ G+ G++  A  +   +  
Sbjct: 229 ISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRI-Y 287

Query: 376 GTDMVLWQTLLGACQ 390
             ++V W  ++G  Q
Sbjct: 288 SKNIVAWNAMIGGMQ 302



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/170 (17%), Positives = 82/170 (48%), Gaps = 3/170 (1%)

Query: 255 YAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314
           + + GL+  A ++F+ +    + + WN ++  +  +G    A++ + +M   G++ D+ +
Sbjct: 68  FVESGLMGNALDMFEKMNHSDTFI-WNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFT 126

Query: 315 YLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374
           +   + AC     +  G ++   +   G   ++     ++D+  + G ++ A  +   + 
Sbjct: 127 FPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMP 186

Query: 375 MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
           +  D+V W +++   Q+ GD   + +  ++++ +G N    F ++S L A
Sbjct: 187 V-RDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLG-NKADRFGMISALGA 234


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 193/564 (34%), Positives = 311/564 (55%), Gaps = 62/564 (10%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           N++  A  LF ++N  S   +  ++ G         ++  ++QM   +   D +     L
Sbjct: 316 NKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVL 375

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM------ 169
            AC  +        +H+ ++ +G L D  LG  LLD+YAK G++  A + F+++      
Sbjct: 376 SACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAA 435

Query: 170 -------------GV------------RDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
                        GV            +DI SWN ++    + +L +E+ ++F +M+   
Sbjct: 436 SWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSN 495

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264
           V KP++ T++  L++C  +GA   G  ++ YI +  + ++ ++  A+IDMY KCG ++ A
Sbjct: 496 V-KPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMA 554

Query: 265 FEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324
           +E+F  I   K++  W  M+ A+A+ G    A++L+ +M   GVKPD V+++A L AC+H
Sbjct: 555 YEIFTQI-IEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSH 613

Query: 325 AGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
            GLVD+G + FN + +   + P + HYG +VDLLGR G L+E    ++ + +  D+ +W 
Sbjct: 614 GGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWS 673

Query: 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443
           +L+ AC+ + +VE+AE A ++L+E+   N G  VLLSN+YA   RWDDV +VR  +    
Sbjct: 674 SLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETG 733

Query: 444 VKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIG 503
           V K PGF+ IE  GV+H+F  S+                         +A   C+L DI 
Sbjct: 734 VPKQPGFTMIEQNGVVHEFVASNL-----------------------VSADILCMLQDIE 770

Query: 504 -----EEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNR 558
                ++E  +    HSE+LAVAFGLI+  E + I+V  ++R+CRDCH V+KLIS+ Y+R
Sbjct: 771 RRLLVKQELSDTTSQHSERLAVAFGLINNQENSPIRVVNSVRMCRDCHSVMKLISQAYDR 830

Query: 559 EIIVRDRVRFHRFKDGACSCKDYW 582
           EI++RD  RFHRF DG CSCKDYW
Sbjct: 831 EIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 212/472 (44%), Gaps = 48/472 (10%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
           LL+ CS+    S IH     AHL T          + S+++ F  L  +N L  AH +  
Sbjct: 41  LLKSCSNIREFSPIH-----AHLITANLIHDP--EITSQVLAF--LLSVNNLDCAHQILS 91

Query: 67  QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
             + P +  +N +L        P   +  Y  M+      D  T  F + AC +   +  
Sbjct: 92  YSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKL 151

Query: 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
             ++H  +L+ GF  +  L   L+ +Y+K G++    ++F++M  RD+ SWN +I+    
Sbjct: 152 GSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVL 211

Query: 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
             +  EA+DLF  M + GV  P+E+T++  ++ C  L   + G ++H YI + +L +   
Sbjct: 212 KGMYREALDLFDEMLVSGVL-PDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGS 270

Query: 247 VCNAVIDMYAKCGLL---------------------------------DKAFEVFDNIKC 273
           + N ++DMY+KCG +                                 DKA ++FD +  
Sbjct: 271 LLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMN- 329

Query: 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333
            +SLV+W TM+  +   G    +LELF+QM    V PD+V+ +  L AC H    D G  
Sbjct: 330 ERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRS 389

Query: 334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           +   +   G+  +     +++DL  + G+L EA    + +   +    W ++L      G
Sbjct: 390 VHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKS-AASWNSMLDGFCRSG 448

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
            V+ A     K+ E    +   +  + N Y  ++ +++   +   M++ +VK
Sbjct: 449 GVDKARDFFNKIPE---KDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVK 497



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 81/190 (42%), Gaps = 7/190 (3%)

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
            V +P+   ++  L +C ++   +E   IH ++    L  +  + + V+        LD 
Sbjct: 31  SVLRPH--WIIDLLKSCSNI---REFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDC 85

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A ++       +S++ WNT++      G     LE +  M   GV  D  ++   + AC 
Sbjct: 86  AHQILSYSHEPESII-WNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACC 144

Query: 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ 383
               V  G  +   +  CG   N     +++ L  + G+L+E C + + ++   D++ W 
Sbjct: 145 KNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMT-HRDVISWN 203

Query: 384 TLLGACQLYG 393
           T++    L G
Sbjct: 204 TMISCYVLKG 213


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/543 (34%), Positives = 321/543 (59%), Gaps = 6/543 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V++ +I+ YA     ++  A  +F  +    T  +N+++ G   S     A+  ++ M+ 
Sbjct: 344 VKNILIDVYA--KCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMI 401

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
              ++D +T    +    R+  L     +HS+ ++ G   D  +   L+D+YAK GE+  
Sbjct: 402 MEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGD 461

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           + K+F+ MG  D  +WN +I+   +    +  + +  +M+   V  P+  T L  L  C 
Sbjct: 462 SLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVV-PDMATFLVTLPMCA 520

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L A + G +IH  +     +  + + NA+I+MY+KCG L+ +F VF+ +  R+ +VTW 
Sbjct: 521 SLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMS-RRDVVTWT 579

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-AN 340
            M+ A+ ++G+G +ALE F  M ++G+ PD V ++A + AC+H+GLV+ G+  F  M  +
Sbjct: 580 GMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTH 639

Query: 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
             + P ++HY  VVDLL R+ ++ +A + ++++ +  D  +W ++L AC+  GD+E AE 
Sbjct: 640 YKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAER 699

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
            SR+++E+  ++ G  +L SN YAA  +WD V  +RK+++++ +KK PG+S+IE+G  +H
Sbjct: 700 VSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVH 759

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI-GEEEKENALCYHSEKLA 519
            F + D S  +   I++ L+ +   + + GY   +  V  ++  EEEK   +C HSE+LA
Sbjct: 760 VFCSGDDSAPQSEAIHKSLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLA 819

Query: 520 VAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           +AFGL++T   T +QV KNLR+C DCH+V KLISK+  REI+VRD  RFH FKDG CSCK
Sbjct: 820 IAFGLLNTEPGTPLQVMKNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCK 879

Query: 580 DYW 582
           D W
Sbjct: 880 DRW 882



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 157/295 (53%), Gaps = 5/295 (1%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           + D LT +  L AC  +  L     I++++LR GF+ ++ +   L+DVYAK G++++A+ 
Sbjct: 304 KPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARD 363

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK-MEGVFKPNEVTVLGALAACGHL 223
           VF+ M  +D  SWN++I+G  Q     EA+ LFK M  ME   + + +T L  ++    L
Sbjct: 364 VFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEE--QADHITYLMLISLSTRL 421

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
              K G  +H    +  + +++ V NA+IDMYAKCG +  + ++F+++    + VTWNT+
Sbjct: 422 ADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDT-VTWNTV 480

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           + A    GD    L++  QM +  V PD  ++L  L  C        G  +   +   G 
Sbjct: 481 ISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGY 540

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           +  ++   +++++  + G L+ +  + + +S   D+V W  ++ A  +YG+ E A
Sbjct: 541 ESELQIGNALIEMYSKCGCLESSFRVFERMSR-RDVVTWTGMIYAYGMYGEGEKA 594



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 186/378 (49%), Gaps = 13/378 (3%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF--NA 78
            ++++ A + + G   S  F    K+I+ Y  S     A + ++FR++ +P+ N +  N+
Sbjct: 22  ELRRIHALVISLGLDGSDFFS--GKLIDKY--SHFRAPASSLSVFRRV-SPAKNVYIWNS 76

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138
           ++R  + +     A+ +Y ++       D  T    +KACA +        ++  +L  G
Sbjct: 77  IIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMG 136

Query: 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFK 198
           F +D  +G  L+D+Y+++G +  A++VFDEM VRD+ SWN+LI+G +      EA++++ 
Sbjct: 137 FESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYH 196

Query: 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
            ++   +  P+  TV   L A  +L   K+G  +H +  +  ++   VV N ++ MY K 
Sbjct: 197 ELRNSWIV-PDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKF 255

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF-EQMGRAGVKPDDVSYLA 317
                A  VFD +  R S VT+NTM+  +        ++++F E + +   KPD ++  +
Sbjct: 256 SRPTDARRVFDEMVVRDS-VTYNTMICGYLKLEMVEESVKMFLENLDQ--FKPDILTVTS 312

Query: 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT 377
            LCAC H   +     ++N M   G          ++D+  + G +  A D+  S+    
Sbjct: 313 VLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMEC-K 371

Query: 378 DMVLWQTLLGACQLYGDV 395
           D V W +++      GD+
Sbjct: 372 DTVSWNSIISGYIQSGDL 389


>gi|297746380|emb|CBI16436.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 219/600 (36%), Positives = 315/600 (52%), Gaps = 95/600 (15%)

Query: 21  HIKQLQAHLTTTGQFQSKLFPVRS-KIIEFYALSPLNELAYAHALFRQINAPSTNDFNAV 79
            IKQ  AHL TTG     L P+ + K+++    S    L+YAH LF QI  P    +N +
Sbjct: 3   QIKQTHAHLITTGLI---LHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTM 59

Query: 80  LRGLAHSSKPT---NAVLWYRQMLRGS-HRSDALTCSFALKACARVLALFETLQIHSHVL 135
           ++  AH+  PT   N++  +  M+R S    +  T  F  KAC   L + E  QI  H +
Sbjct: 60  IK--AHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAI 117

Query: 136 RHGFLADALLGTTLLDVYAK-------------------------------VGEIVSAKK 164
           + G  ++  +   ++ +YA                                 GEI  AK+
Sbjct: 118 KIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKE 177

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224
           +FDEM  RD+ SW  +IAG  Q     EA+DLF  M ++ V                   
Sbjct: 178 MFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEM-LQTV------------------- 217

Query: 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF-DNIKCRKSLVTWNTM 283
           A  +G  IH YI +  + MN  +  +++DMYAKCG +D A +VF D    +  +  WN M
Sbjct: 218 ALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAM 277

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +  +A+HG    A++LFEQM    V P+ V+++A L AC+H  LV++G            
Sbjct: 278 IGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEG------------ 325

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403
                               +EA + V ++ M  D  +W  LLGAC+++ D+E  +   +
Sbjct: 326 --------------------REAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGK 365

Query: 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463
            + E+ S++ G  VLL+NLY+A  +WD+   VR+ ++    KK PG S IE+ GV H+F 
Sbjct: 366 IIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFL 425

Query: 464 TSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEE-KENALCYHSEKLAVAF 522
             D+SH + +++Y  LDE+  K+K  GY      VL DI +EE KE AL  HSEKLA+AF
Sbjct: 426 VGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAF 485

Query: 523 GLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           GLI+T   T+I++ KNLR+C DCH+  K ISKVY REIIVRDR+R+H FKDG CSCKDYW
Sbjct: 486 GLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 545


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 188/537 (35%), Positives = 311/537 (57%), Gaps = 5/537 (0%)

Query: 46   IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
            ++E YA +    L   H +F  I   +   +N ++     + +P  A+L + QM      
Sbjct: 541  LMELYADT--GNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLM 598

Query: 106  SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
             D+ + + +L AC  +       QIH ++++ G   D  +   L+D+YAK G + SA K+
Sbjct: 599  PDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKM 657

Query: 166  FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
            F+++  + + +WN++I G +Q   + EA+ LF +M M  V K +++T L  + AC HLG 
Sbjct: 658  FEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCV-KMDKLTFLSVIQACSHLGY 716

Query: 226  WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
             ++G  +H  +    L  +  +  A+ DMY+KCG L  A  VFD +  R S+V+W+ M+ 
Sbjct: 717  LEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSER-SIVSWSVMIA 775

Query: 286  AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
             + +HG     + LF QM  +G+KP+D++++  L AC+HAG V++G   FNSM+  GV+P
Sbjct: 776  GYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEP 835

Query: 346  NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
               H+  +VDLL RAG L  A  I+ S+    +  +W  LL  C+++  +++ +   + L
Sbjct: 836  KHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNL 895

Query: 406  VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTS 465
            +++ + + G + LLSN+YA    WD  G+VR  MK++ ++KVPG+S IE+   I++F   
Sbjct: 896  LDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPG 955

Query: 466  DKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
            D SH + ++IY  L+     +    Y +     +    +  KEN +  HSEKLA+AFG+I
Sbjct: 956  DTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGII 1015

Query: 526  STSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +T   T++++ KNLR+CRDCH   K+ SK+  REII+RD  RFH F++G+CSC DYW
Sbjct: 1016 NTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 166/309 (53%), Gaps = 13/309 (4%)

Query: 96  YRQMLRGSHRSDALTCSFALKACARVLALF--------ETLQIHSHVLRHGFLADA-LLG 146
           + QM+  +   D++T     +AC+ + +L         E   +H  V+R     +   LG
Sbjct: 479 FSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLG 538

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
             L+++YA  G +    KVF+ +  + I SWN LI+   +     EA+ LF +M+ +G+ 
Sbjct: 539 PALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLM 598

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            P+  ++  +L+ACG +   + G +IH YI +   + N  V NA+IDMYAKCG +  A +
Sbjct: 599 -PDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANK 656

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           +F+ IK  KSLVTWN+M+  F+ +G    A+ LF+QM    VK D +++L+ + AC+H G
Sbjct: 657 MFEKIK-EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLG 715

Query: 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
            ++ G  + + +   G++ +     ++ D+  + G LQ A  +   +S  + +V W  ++
Sbjct: 716 YLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERS-IVSWSVMI 774

Query: 387 GACQLYGDV 395
               ++G +
Sbjct: 775 AGYGMHGQI 783



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 138/335 (41%), Gaps = 62/335 (18%)

Query: 108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFD 167
            L  S +L +  R        Q+H+H+   G        T L++ YA++G   S+K+VFD
Sbjct: 345 TLNSSRSLTSHKRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFD 404

Query: 168 EMGVRDIASWNALIAGLAQGNL-------------------------------------- 189
                D   W  LI     G                                        
Sbjct: 405 TFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLS 464

Query: 190 -------ASEAVDLFKRMKMEGVFKPNEVTVLGALAAC--------GHLGAWKEGDKIHE 234
                  ASE +D+F +M  E V +P+ VT+L    AC        G LG  KEG  +H 
Sbjct: 465 VGGKNGQASEGLDMFSQMISEAV-EPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHG 523

Query: 235 YIREERLDMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
           ++    +D  +  +  A++++YA  G L    +VF+ IK  K++++WNT++  F  +G  
Sbjct: 524 FVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIK-EKTILSWNTLISIFTRNGQP 582

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY--G 351
             AL LF QM   G+ PD  S  ++L AC        G ++   +   G   N   +   
Sbjct: 583 EEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG---NFNDFVQN 639

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLL 386
           +++D+  + G +  A  + + +   + +V W +++
Sbjct: 640 ALIDMYAKCGFVHSANKMFEKIKEKS-LVTWNSMI 673


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 311/537 (57%), Gaps = 5/537 (0%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           ++E YA +    L   H +F  I   +   +N ++     + +P  A+L + QM      
Sbjct: 344 LMELYADT--GNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLM 401

Query: 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165
            D+ + + +L AC  +       QIH ++++ G   D  +   L+D+YAK G + SA K+
Sbjct: 402 PDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKM 460

Query: 166 FDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225
           F+++  + + +WN++I G +Q   + EA+ LF +M M  V K +++T L  + AC HLG 
Sbjct: 461 FEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCV-KMDKLTFLSVIQACSHLGY 519

Query: 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVM 285
            ++G  +H  +    L  +  +  A+ DMY+KCG L  A  VFD +   +S+V+W+ M+ 
Sbjct: 520 LEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMS-ERSIVSWSVMIA 578

Query: 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345
            + +HG     + LF QM  +G+KP+D++++  L AC+HAG V++G   FNSM+  GV+P
Sbjct: 579 GYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEP 638

Query: 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405
              H+  +VDLL RAG L  A  I+ S+    +  +W  LL  C+++  +++ +   + L
Sbjct: 639 KHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNL 698

Query: 406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTS 465
           +++ + + G + LLSN+YA    WD  G+VR  MK++ ++KVPG+S IE+   I++F   
Sbjct: 699 LDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPG 758

Query: 466 DKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
           D SH + ++IY  L+     +    Y +     +    +  KEN +  HSEKLA+AFG+I
Sbjct: 759 DTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGII 818

Query: 526 STSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +T   T++++ KNLR+CRDCH   K+ SK+  REII+RD  RFH F++G+CSC DYW
Sbjct: 819 NTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 194/395 (49%), Gaps = 14/395 (3%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            L ++C+++  ++     QL AHL  TG  +    P  +K+IE YA   + E   +  +F
Sbjct: 6   PLFRRCATSTTLT-----QLHAHLFITGLHRHP--PASTKLIESYAQIGIFE--SSKRVF 56

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLAL 124
                P +  +  +++          AV  Y +M+ +   +         LKAC+    L
Sbjct: 57  DTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDL 116

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL 184
               ++H  V++ GF +DA++ T+LL +Y ++  +  A K FD M +RD+ +W++++   
Sbjct: 117 SVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNF 176

Query: 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244
            Q   ASE +D+F +M  E V +P+ VT+L    AC  LG+ + G  +H Y+    ++ N
Sbjct: 177 VQNGQASEGLDMFSQMISEAV-EPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESN 235

Query: 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304
             + N++I MY K G L  A  +F+N+ CR +   W  M+  +   G    AL +F +M 
Sbjct: 236 ASLNNSLIVMYGKLGDLYSAERLFENVPCRMT-APWTPMISCYNQSGCFQEALNVFAKMQ 294

Query: 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG-SVVDLLGRAGRL 363
              ++P+ V+ +  LCAC   G V +G  +   +    + P +   G ++++L    G L
Sbjct: 295 EFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNL 354

Query: 364 QEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           ++   + +++   T ++ W TL+      G  E A
Sbjct: 355 RDCHKVFETIKEKT-ILSWNTLISIFTRNGQPEEA 388



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 177/342 (51%), Gaps = 5/342 (1%)

Query: 55  LNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA 114
           L +L  A  LF  +    T  +  ++     S     A+  + +M       + +T    
Sbjct: 249 LGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGV 308

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADA-LLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173
           L ACAR+  + E   +H  V+R     +   LG  L+++YA  G +    KVF+ +  + 
Sbjct: 309 LCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKT 368

Query: 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233
           I SWN LI+   +     EA+ LF +M+ +G+  P+  ++  +L+ACG +   + G +IH
Sbjct: 369 ILSWNTLISIFTRNGQPEEALLLFVQMQTQGLM-PDSYSLASSLSACGTISFSQLGAQIH 427

Query: 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293
            YI +   + N  V NA+IDMYAKCG +  A ++F+ IK  KSLVTWN+M+  F+ +G  
Sbjct: 428 GYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIK-EKSLVTWNSMICGFSQNGYS 485

Query: 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353
             A+ LF+QM    VK D +++L+ + AC+H G ++ G  + + +   G++ +     ++
Sbjct: 486 VEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTAL 545

Query: 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395
            D+  + G LQ A  +   +S  + +V W  ++    ++G +
Sbjct: 546 TDMYSKCGELQMAHGVFDRMSERS-IVSWSVMIAGYGMHGQI 586


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 207/578 (35%), Positives = 330/578 (57%), Gaps = 9/578 (1%)

Query: 6    ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
            ++L+ C+S GA+     +Q+  H+  TG FQ  ++ V S +I+ YA     +LA A  + 
Sbjct: 468  SILRTCTSLGAL--YLGEQIHTHVIKTG-FQLNVY-VCSVLIDMYA--KYGQLALALRIL 521

Query: 66   RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            R++       + A++ G       + A+  + +M     + D +  + A+ ACA + AL 
Sbjct: 522  RRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALR 581

Query: 126  ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
            +  QIH+     GF AD  +   L+ +YA+ G I  A   F+++G ++  SWN+L++GLA
Sbjct: 582  QGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLA 641

Query: 186  QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
            Q     EA+ +F RM +    + N  T   A++A   L   K+G +IH  + +   D   
Sbjct: 642  QSGYFEEALQVFVRM-LRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSER 700

Query: 246  VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
             V N++I +YAK G +  A+  F+++   +++++WN M+  ++ HG G  AL LFE+M  
Sbjct: 701  EVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQHGCGMEALRLFEEMKV 759

Query: 306  AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQ 364
             G+ P+ V+++  L AC+H GLV +G+  F SM     + P  +HY  VVDLLGRAG+L 
Sbjct: 760  CGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLD 819

Query: 365  EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
             A + +K + +  D ++W+TLL AC ++ ++E+ E A+  L+E+   +   +VL+SN+YA
Sbjct: 820  RAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYA 879

Query: 425  AYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMF 484
               +W      RK MK+  VKK PG S+IEV   +H F+  DK H    +IYE +  +  
Sbjct: 880  VSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNR 939

Query: 485  KIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRD 544
            +  E GY   +  +L++  + +K+     HSEKLA+AFGL+S      I+V KNLR+C D
Sbjct: 940  RTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCND 999

Query: 545  CHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            CH+ IK +SK+ NR IIVRD  RFH F  G CSCKD+W
Sbjct: 1000 CHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 186/364 (51%), Gaps = 6/364 (1%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           F S+ + V + ++  Y+ S   +L  A  +F  +N+     +N+++ GL        A+ 
Sbjct: 292 FHSETY-VCNGLVALYSRS--RKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALE 348

Query: 95  WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154
            + +M R   + D +T +  L ACA V AL + +Q+HSH ++ G  AD +L  +LLD+Y+
Sbjct: 349 LFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYS 408

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K  ++ +A K F      +I  WN ++    Q +  S++ ++F++M+MEG+  PN+ T  
Sbjct: 409 KCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMI-PNQFTYP 467

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L  C  LGA   G++IH ++ +    +NV VC+ +IDMYAK G L  A  +   +   
Sbjct: 468 SILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-E 526

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
             +V+W  M+  +  H     AL+LFE+M   G++ D++ + +A+ AC     +  G ++
Sbjct: 527 DDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQI 586

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
                  G   ++    +++ L  R GR+QEA    + +    + + W +L+      G 
Sbjct: 587 HAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG-DKNNISWNSLVSGLAQSGY 645

Query: 395 VEMA 398
            E A
Sbjct: 646 FEEA 649



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 154/302 (50%), Gaps = 7/302 (2%)

Query: 96  YRQMLRGSHRSDALTCSFALKACARVLALFETL-QIHSHVLRHGFLADALLGTTLLDVYA 154
           +R+ML      +  T +  LKAC      F  + Q+HS    +GF +  L+   L+D+Y+
Sbjct: 147 FRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYS 206

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           K G I SAKKVF+ + ++DI +W A+I+GL+Q  L  EA+ LF  M    +F P    + 
Sbjct: 207 KNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIF-PTPYVLS 265

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             L+A   +  ++ G+++H  + +        VCN ++ +Y++   L  A  +F  +  R
Sbjct: 266 SVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSR 325

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
              V++N+++      G   RALELF +M R  +KPD ++  + L AC   G +  G++L
Sbjct: 326 DG-VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQL 384

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
            +     G+  ++   GS++DL  +   ++ A           ++VLW  +L A   YG 
Sbjct: 385 HSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTET-ENIVLWNVMLVA---YGQ 440

Query: 395 VE 396
           ++
Sbjct: 441 LD 442



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 195/383 (50%), Gaps = 15/383 (3%)

Query: 10  KCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQIN 69
           K    G ++  ++KQ+ +     G   S L  V + +I+ Y+ +   E   A  +F  I 
Sbjct: 167 KACVGGDIAFNYVKQVHSRTFYYGFDSSPL--VANLLIDLYSKNGYIE--SAKKVFNCIC 222

Query: 70  APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA---CARVLALFE 126
                 + A++ GL+ +     A+L +  M    H S+     + L +    +  + LFE
Sbjct: 223 MKDIVTWVAMISGLSQNGLEEEAILLFCDM----HASEIFPTPYVLSSVLSASTKIQLFE 278

Query: 127 T-LQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA 185
              Q+H  V++ GF ++  +   L+ +Y++  +++SA+++F  M  RD  S+N+LI+GL 
Sbjct: 279 LGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLV 338

Query: 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245
           Q   +  A++LF +M+ +   KP+ +TV   L+AC  +GA  +G ++H +  +  +  ++
Sbjct: 339 QQGFSDRALELFTKMQRD-CLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADI 397

Query: 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           ++  +++D+Y+KC  ++ A + F   +  +++V WN M++A+    +   + E+F QM  
Sbjct: 398 ILEGSLLDLYSKCADVETAHKFFLXTET-ENIVLWNVMLVAYGQLDNLSDSFEIFRQMQM 456

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
            G+ P+  +Y + L  C   G +  G ++   +   G + N+     ++D+  + G+L  
Sbjct: 457 EGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLAL 516

Query: 366 ACDIVKSVSMGTDMVLWQTLLGA 388
           A  I++ +    D+V W  ++  
Sbjct: 517 ALRILRRLP-EDDVVSWTAMIAG 538



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 134/285 (47%), Gaps = 4/285 (1%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKK 164
           RS+     + L+ C    +LFET+++H  + + GF  + LL  +L+D Y + G+   A K
Sbjct: 55  RSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVK 114

Query: 165 VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC-GHL 223
           VFDE   R + SWN +I          +   LF+RM  EG+  PN  T  G L AC G  
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGI-TPNGYTFAGVLKACVGGD 173

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
            A+    ++H        D + +V N +ID+Y+K G ++ A +VF+ I C K +VTW  M
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCI-CMKDIVTWVAM 232

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
           +   + +G    A+ LF  M  + + P      + L A     L + G +L   +   G 
Sbjct: 233 ISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGF 292

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
                    +V L  R+ +L  A  I  +++   D V + +L+  
Sbjct: 293 HSETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSLISG 336


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 199/543 (36%), Positives = 317/543 (58%), Gaps = 7/543 (1%)

Query: 42  VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLR 101
           V S +++ YA     ++  A  +  Q+       F A++ G +H  +   ++  +R M +
Sbjct: 214 VGSALVDMYA--KFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTK 271

Query: 102 GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161
               ++  T S  L  C  +  L     IH  +++ G  +     T+LL +Y + G +  
Sbjct: 272 KGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDD 331

Query: 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221
           + KVF +    +  +W ++I GL Q      A+  F++M +     PN  T+   L AC 
Sbjct: 332 SLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQM-LRSSITPNSFTLSSVLRACS 390

Query: 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281
            L   ++G +IH  + +  LD++  V  A+ID Y KCG  + A  VF+ +     +V+ N
Sbjct: 391 SLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGL-LEVDVVSVN 449

Query: 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341
           +M+ ++A +G G  AL+LF  M   G++P++V++L  L ACN+AGL+++G  +F+S  N 
Sbjct: 450 SMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNS 509

Query: 342 G-VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEI 400
           G ++    HY  +VDLLGRAGRL+EA  ++  V++ +D+V+W+TLL AC+++GDVEMA+ 
Sbjct: 510 GNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKR 568

Query: 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIH 460
              +++++   + G  VLLSNLYA+   W  V  ++ AM+   +KK P  S+++V   IH
Sbjct: 569 VMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIH 628

Query: 461 KFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAV 520
            F   D SH  +R+I EKL+E++ K+KE GY   T  VL D+ EE+K  +L YHSEKLAV
Sbjct: 629 TFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAV 688

Query: 521 AFGLI-STSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK 579
           AF L  S  + T+I++ KNLR+C DCH  +K +SK+  R+II RD  RFH F++G CSC 
Sbjct: 689 AFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCG 748

Query: 580 DYW 582
           DYW
Sbjct: 749 DYW 751



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 176/353 (49%), Gaps = 12/353 (3%)

Query: 74  NDFNAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALKACARVLALFETLQIHS 132
           N  +A  + L+H S+    +   R++ +  + +S  L  S  ++ C  + ++ +  +I S
Sbjct: 46  NRVSAFFKSLSHFSQSNIKI---RKLCITETIQSTKLYSSL-IQQCIGIKSITDITKIQS 101

Query: 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192
           H L+ GF     LG  L+D Y K G +V A+KVFDE+  R I +WN++IA   +   + E
Sbjct: 102 HALKRGFHHS--LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKE 159

Query: 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH-EYIREERLDMNVVVCNAV 251
           A+D+++RM  +G+  P+E T      A   LG   EG + H + +       NV V +A+
Sbjct: 160 AIDIYQRMVPDGIL-PDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSAL 218

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           +DMYAK G +  A  V D +   K +V +  +++ ++ HG+   +L++F  M + G++ +
Sbjct: 219 VDMYAKFGKMRDARLVSDQV-VGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEAN 277

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371
           + +  + L  C +   +  G  +   +   G++  +    S++ +  R G + ++  + K
Sbjct: 278 EYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFK 337

Query: 372 SVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424
              +  + V W +++      G  E+A +  R+++   S     F L S L A
Sbjct: 338 QF-INPNQVTWTSVIVGLVQNGREEIALLKFRQMLR-SSITPNSFTLSSVLRA 388


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 205/582 (35%), Positives = 320/582 (54%), Gaps = 17/582 (2%)

Query: 5   NALLQKCSSNGAVSHIHI-KQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           +A+  +CS  G  +H  I K L   L +          + + ++  Y  S L+    A  
Sbjct: 15  SAVSTQCSRLGRAAHAQIIKTLDNPLPSF---------IYNHLVNMY--SKLDRPNSAQL 63

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           L       S   + A++ G   + + T+A+  +  M R S + +  T   A KA   + +
Sbjct: 64  LLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRS 123

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
                Q+H+  ++ G ++D  +G +  D+Y+K G    A+K+FDEM  R+IA+WNA ++ 
Sbjct: 124 PLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSN 183

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
                   +A+  F   + EG+ +P +  V   L+AC  L   + G  +H    +  +  
Sbjct: 184 SVLEGRYDDALTAFIEARKEGI-EPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVG 242

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N+ V +A++DMY KCG ++ A   FD +   ++LVTWN M+  +A  G    A+ LF++M
Sbjct: 243 NIFVGSALVDMYGKCGSIEDAERAFDEMP-ERNLVTWNAMIGGYAHQGQADMAVTLFDEM 301

Query: 304 --GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRA 360
             G   V P+ V+++  L AC+ AG V+ G+ +F SM    G++P  +HY  VVDLLGRA
Sbjct: 302 TCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRA 361

Query: 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420
           G +++A   +K + +   + +W  LLGA +++G  E+ ++A+  L E+   + G+ VLLS
Sbjct: 362 GMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLS 421

Query: 421 NLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLD 480
           N++AA  RW++   VRK MK+  +KK  G S+I  G  +H F   D SH +  EI   L 
Sbjct: 422 NMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLA 481

Query: 481 EIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLR 540
           ++  +++  GY   TS  L D+ EEEK   + YHSEK+A+AFGLIS      I++ KNLR
Sbjct: 482 KLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLR 541

Query: 541 ICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           IC DCH  IK IS +  REIIVRD   FHRF+D  CSC+DYW
Sbjct: 542 ICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 223/626 (35%), Positives = 341/626 (54%), Gaps = 56/626 (8%)

Query: 3   NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
           +  +LL++CS   A+     +QL A    TG   S    +R+ ++  Y    L   ++A 
Sbjct: 22  HFRSLLRQCSRATALRPG--QQLHATAIVTGLISSPNHFLRNALLHLYGSCSLP--SHAR 77

Query: 63  ALFRQINAPSTN--DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
            LF +I     +  D+ A++R       P  ++  + QM +     D +    AL ACAR
Sbjct: 78  KLFDEIPQSHKDSVDYTALIR----HCPPFESLKLFIQMRQFDLPLDGVVMVCALNACAR 133

Query: 121 VLALFETL--QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           +      +  Q+H  V++ GF+    +   L++VY K G +  A+K+F+ + VR + SW+
Sbjct: 134 LGGGDTKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWS 193

Query: 179 ALIAGLAQ------------------------------GN-LASEAVDLFKRMKMEGVFK 207
             + GL +                              GN    EA  L K M     F+
Sbjct: 194 CFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFR 253

Query: 208 PNEVTVLGALAACGHLGAWKEGDKIHEY-IREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            + VT+   L+AC   G    G  +H Y ++E  LD  V+V  +++DMYAKCG ++ A  
Sbjct: 254 LSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALS 313

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
           VF ++  ++++V WN M+   A+HG G  A+++F  M    VKPD V+++A L AC+H+G
Sbjct: 314 VFRSM-LKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVEE-VKPDGVTFMALLSACSHSG 371

Query: 327 LVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LV+ G   F+ +     +KP ++HY  +V LLGRAGRL+EA  +VK++ +  + V+  +L
Sbjct: 372 LVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPPNEVVLGSL 431

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           +G+C  +G +++ E   R L+EM   N    ++LSN+YA   + +    +R+ +K R +K
Sbjct: 432 IGSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIK 491

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL------ 499
           KVPG S I V G +H+F   DKSH +  EIY KLDE++ +++  GY   TSC +      
Sbjct: 492 KVPGMSSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSN 551

Query: 500 -HDIGE--EEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVY 556
             D  E  EE E  L  HSEKLA+ FGL+ST   + + +FKNLRIC+DCH  IK+ SKVY
Sbjct: 552 RDDCSESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHIFKNLRICQDCHSAIKIASKVY 611

Query: 557 NREIIVRDRVRFHRFKDGACSCKDYW 582
            REI+VRDR RFH FK G+CSC DYW
Sbjct: 612 KREIVVRDRYRFHSFKHGSCSCSDYW 637


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/437 (41%), Positives = 267/437 (61%), Gaps = 3/437 (0%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
            T+L  YA+ G +  A+ +F  M  +D  SW A++A  +Q   + E + LFK M   G +
Sbjct: 390 NTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEW 449

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
             N       L+ C  + A + G ++H  + +    +   V NA++ MY KCG +++A  
Sbjct: 450 V-NRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHS 508

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
            F+ ++ R  +V+WNTM+  +A HG G  ALE+F+ M +   KPDD++ +  L AC+H+G
Sbjct: 509 AFEEMEER-DVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSG 567

Query: 327 LVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           LV+ G+  F SM  + GV    +HY  ++DLLGRAGRL EA +++K +    D  +W  L
Sbjct: 568 LVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGAL 627

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           LGA +++ + E+   A+ K+ E+   N G +VLLSN+YA+  +W DV ++R  M  R VK
Sbjct: 628 LGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVK 687

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           KVPGFS+IEV   +H F   D  H +  +IY  L+++  ++K+ GY + T  VLHD+ EE
Sbjct: 688 KVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEE 747

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE+ L YHSEKLAVA+G++       I+V KNLR+CRDCH   K IS +  R II+RD 
Sbjct: 748 EKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDS 807

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH F+DG+CSC DYW
Sbjct: 808 NRFHHFRDGSCSCGDYW 824



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 8/180 (4%)

Query: 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI 174
           L  CA + AL   +Q+HS +++ G+     +G  LL +Y K G +  A   F+EM  RD+
Sbjct: 459 LSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDV 518

Query: 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234
            SWN +IAG A+     EA+++F  M+     KP+++T++G LAAC H G  ++G     
Sbjct: 519 VSWNTMIAGYARHGFGKEALEVFDTMRKTST-KPDDITLVGVLAACSHSGLVEKGIS--- 574

Query: 235 YIREERLDMNVVV----CNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290
           Y      D  V         +ID+  + G LD+A  +  ++        W  ++ A  +H
Sbjct: 575 YFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIH 634



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 146/344 (42%), Gaps = 60/344 (17%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-----DALTCSFAL 115
           A  LF  +   ST+ +N +L G A + +   A+ ++R + R    S      AL  S +L
Sbjct: 126 AERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSL 185

Query: 116 KACARVLALFETLQIHSHV---------LRHGFLA------------DALLGTTLLDVYA 154
              A V ALF+ + +   V           HG ++            DA+    +L  Y 
Sbjct: 186 ---ADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYV 242

Query: 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
           + G I  A+++FD     D  SWNAL+AG  Q +   EA  +F +M    V   N  T++
Sbjct: 243 RNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWN--TMV 300

Query: 215 GALAACGHLG----------------------AWKEGDKIHEYIR--EERLDMNVVVCNA 250
              A  G +                        + +   + E  R  +   D N V  NA
Sbjct: 301 SGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNA 360

Query: 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           ++  Y +  ++++A E+FD + CR ++ +WNTM+  +A  G    A  +F  M     + 
Sbjct: 361 MMAAYVQRRMMEEAKELFDAMPCR-NVASWNTMLTGYAQAGMLDEARAIFGMM----PQK 415

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354
           D VS+ A L A +  G  ++ ++LF  M  CG   N   +  V+
Sbjct: 416 DAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVL 459



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 121/252 (48%), Gaps = 11/252 (4%)

Query: 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201
           D +   T++  YA+ G++  A+++FD   +RD+ +W A+++G AQ  +  EA  +F  M 
Sbjct: 292 DVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMP 351

Query: 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261
                  N V+    +AA       +E  ++ + +       NV   N ++  YA+ G+L
Sbjct: 352 -----DKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR----NVASWNTMLTGYAQAGML 402

Query: 262 DKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321
           D+A  +F  +  +K  V+W  M+ A++  G     L+LF++MGR G   +  ++   L  
Sbjct: 403 DEARAIF-GMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLST 461

Query: 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVL 381
           C     ++ G++L + +   G         +++ +  + G ++EA    + +    D+V 
Sbjct: 462 CADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEME-ERDVVS 520

Query: 382 WQTLLGACQLYG 393
           W T++     +G
Sbjct: 521 WNTMIAGYARHG 532


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/515 (37%), Positives = 293/515 (56%), Gaps = 11/515 (2%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N +L    H+ +  +A+  Y++M     R+D +T    L AC+    +     +H  ++
Sbjct: 318 WNIMLSAYVHNDRGKDAIQLYQRM---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIV 374

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
                 + ++G  L+ +YAK G    A+ VFD+M  R I SW  +I+   +  L +EA  
Sbjct: 375 NDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACH 434

Query: 196 LFKRM-KMEG-----VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249
           LF++M ++E        KP+ +  +  L AC  + A ++G  + E      L  +  V  
Sbjct: 435 LFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGT 494

Query: 250 AVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309
           AV+++Y KCG +++   +FD +  R  +  WN M+  +A  G    AL+LF +M   GV+
Sbjct: 495 AVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVR 554

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPNMKHYGSVVDLLGRAGRLQEAC 367
           PD  S+++ L AC+H GL D G   F SM      V   ++H+G V DLLGR GRL+EA 
Sbjct: 555 PDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAE 614

Query: 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427
           + ++ + +  D V W +LL AC+ + D++ A+  + KL+ +       +V LSN+YA  +
Sbjct: 615 EFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQ 674

Query: 428 RWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487
           +W  V +VRK M  + VKK  G S IE+G  +H F T D +H + REI E+L ++  ++K
Sbjct: 675 KWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMK 734

Query: 488 EYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHD 547
           E GY   T  VLH + E+EKE  L  HSE+LA+A GLIST   T ++V KNLR+C DCH 
Sbjct: 735 ECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHT 794

Query: 548 VIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             KLISK+  R+I+VRD  RFH FKDG CSC+DYW
Sbjct: 795 ATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 199/382 (52%), Gaps = 16/382 (4%)

Query: 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFL-ADALLGTTLLDVYAKVGEIVSAK 163
           R++  T +  L+ CAR  AL E  +IHS  ++H  L  + +LG  ++ +YA       AK
Sbjct: 40  RAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAK 99

Query: 164 KVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223
             FD +  R++ SW  L+A  A    + E +   +RM+ +GV +P+ VT + AL +CG  
Sbjct: 100 AAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGV-RPDAVTFITALGSCGDP 158

Query: 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTM 283
            + ++G +IH+ + + RL+++  V NA+++MY KCG L  A  VF  ++  +++++W+ M
Sbjct: 159 ESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIM 218

Query: 284 VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343
             A A+HG+   AL  F  M   G+K    + +  L AC+   LV DG  + + +A  G 
Sbjct: 219 AGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGF 278

Query: 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG-TDMVLWQTLLGACQLYGDVEMAEIAS 402
           +  +    +V+ + GR G ++EA  +  ++     D+V W  +L A  ++ D     I  
Sbjct: 279 ESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSA-YVHNDRGKDAIQL 337

Query: 403 RKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVR---KAMKNRDVKKVPGFSYIEVGGVI 459
            + +++ ++      LLS   +A    +DVG  R   K + N +++K      + VG  +
Sbjct: 338 YQRMQLRADKVTYVSLLSACSSA----EDVGLGRVLHKQIVNDELEK-----NVIVGNAL 388

Query: 460 HKFFTSDKSHVKWREIYEKLDE 481
              +    SH + R +++K+++
Sbjct: 389 VSMYAKCGSHTEARAVFDKMEQ 410



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 166/331 (50%), Gaps = 9/331 (2%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A A F  +   +   +  ++   A S +    +    +M +   R DA+T   AL +C  
Sbjct: 98  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 157

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG-VRDIASWNA 179
             +L + ++IH  V+      D  +   LL++Y K G +  AK+VF +M   R++ SW+ 
Sbjct: 158 PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 217

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           +    A      EA+  F+ M + G+ K  +  ++  L+AC      ++G  IH  I   
Sbjct: 218 MAGAHALHGNVWEALRHFRFMLLLGI-KATKSAMVTILSACSSPALVQDGRLIHSCIALS 276

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMAFAVHGD-GPRAL 297
             +  ++V NAV+ MY +CG +++A +VFD + +  + +V+WN M+ A+ VH D G  A+
Sbjct: 277 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAY-VHNDRGKDAI 335

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           +L+++M    ++ D V+Y++ L AC+ A  V  G  L   + N  ++ N+    ++V + 
Sbjct: 336 QLYQRM---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMY 392

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388
            + G   EA  +   +   + ++ W T++ A
Sbjct: 393 AKCGSHTEARAVFDKMEQRS-IISWTTIISA 422


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 194/523 (37%), Positives = 296/523 (56%), Gaps = 34/523 (6%)

Query: 92  AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD 151
           A+  + QM     + +  T +   KAC  + A      +H   L+  +  D  +G  LLD
Sbjct: 224 ALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLD 283

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
           +Y K G+I  A++ F+E+  +D+  W+ +IA  AQ + + EAV++F +M+ + +  PN+ 
Sbjct: 284 LYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMR-QALVLPNQF 342

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T    L AC  +     G++IH ++ +  L  +V V NA++D+YAKCG ++ + E+F   
Sbjct: 343 TFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAES 402

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELF------------------------------- 300
             R   VTWNT+++     GDG +AL LF                               
Sbjct: 403 PHRND-VTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPG 461

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGR 359
            Q+    VKPD ++++  L AC +AGL+D G   F SM  + G++P ++HY  +V LLGR
Sbjct: 462 LQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGR 521

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
            G L +A  ++  +     +++W+ LLGAC ++ D+E+  I++++++EM   +    VLL
Sbjct: 522 GGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLL 581

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YA  +RWD+V  VRK MK + VKK PG S+IE  G +H F   D SH + R I   L
Sbjct: 582 SNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGML 641

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           + +  K K+ GY    + VL D+ +EEKE  L  HSE+LA++FG+I T   + I++ KNL
Sbjct: 642 EWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNL 701

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RIC DCH  IK ISKV  REI+VRD  RFH F++G CSC DYW
Sbjct: 702 RICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 171/342 (50%), Gaps = 5/342 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKA 117
           L  A  LF ++   +T  F  +++G A S +   A+  + ++ R  H  +    +  LK 
Sbjct: 89  LCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKL 148

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
                       IH+ + + G  ++A +GT L+D Y+  G +  A++VFD +  +D+ SW
Sbjct: 149 LVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSW 208

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
             ++   A+ +   EA+ LF +M+M G FKPN  T      AC  L A+  G  +H    
Sbjct: 209 TGMVTCFAENDCFKEALKLFSQMRMVG-FKPNNFTFASVFKACLGLEAFDVGKSVHGCAL 267

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           + R ++++ V  A++D+Y K G +D A   F+ I  +K ++ W+ M+  +A       A+
Sbjct: 268 KSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIP-KKDVIPWSFMIARYAQSDQSKEAV 326

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           E+F QM +A V P+  ++ + L AC     ++ G ++   +   G+  ++    +++D+ 
Sbjct: 327 EMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVY 386

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQT-LLGACQLYGDVEMA 398
            + GR++ + ++        D V W T ++G  QL GD E A
Sbjct: 387 AKCGRMENSMELFAESPHRND-VTWNTVIVGHVQL-GDGEKA 426



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 131/270 (48%), Gaps = 27/270 (10%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +H  +L+ G   D      LL++Y K   +  A K+FDEM  R+  S+  LI G A+   
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 190 ASEAVDLFKRMKMEG------VFKPNEVTVLGALAA--CGHLGAWKEGDKIHEYIREERL 241
             EA++LF R+  EG      VF     T+L  L +  CG LG W     IH  I +   
Sbjct: 120 FLEAIELFVRLHREGHELNPFVF----TTILKLLVSTDCGELG-W----GIHACIFKLGH 170

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           + N  V  A+ID Y+ CG +D A EVFD I   K +V+W  MV  FA +     AL+LF 
Sbjct: 171 ESNAFVGTALIDAYSVCGRVDVAREVFDGI-LYKDMVSWTGMVTCFAENDCFKEALKLFS 229

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK---HYG-SVVDLL 357
           QM   G KP++ ++ +   AC      D G     S+  C +K   +   + G +++DL 
Sbjct: 230 QMRMVGFKPNNFTFASVFKACLGLEAFDVG----KSVHGCALKSRYELDLYVGVALLDLY 285

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387
            ++G + +A    + +    D++ W  ++ 
Sbjct: 286 TKSGDIDDARRAFEEIP-KKDVIPWSFMIA 314



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 117/264 (44%), Gaps = 33/264 (12%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A   F +I       ++ ++   A S +   AV  + QM +     +  T +  L+ACA 
Sbjct: 294 ARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACAT 353

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L    QIH HV++ G  +D  +   L+DVYAK G + ++ ++F E   R+  +WN +
Sbjct: 354 MEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTV 413

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY-IREE 239
           I G  Q     +A+ LF  M +E   +  EVT   AL AC  L A + G +IH   ++ +
Sbjct: 414 IVGHVQLGDGEKALRLFLNM-LEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPD 472

Query: 240 RL---------------------------DMNVVVC----NAVIDMYAKCGLLDKAFEVF 268
           +L                           D  +  C      ++ +  + G LDKA ++ 
Sbjct: 473 KLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLI 532

Query: 269 DNIKCRKSLVTWNTMVMAFAVHGD 292
           D I  + S++ W  ++ A  +H D
Sbjct: 533 DEIPFQPSVMVWRALLGACVIHND 556


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 189/524 (36%), Positives = 304/524 (58%), Gaps = 5/524 (0%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           AHA+F  I       ++ ++   A S +   A   + +M+R     +  + S  L+ACA 
Sbjct: 303 AHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACAN 362

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L    QIH+  ++ G+ ++  +G  L+D+YAK   + ++ ++F  +   +  SWN +
Sbjct: 363 IAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTI 422

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           I G  Q   A +A+ +F  M+   +    +VT    L AC +  + K   +IH  I +  
Sbjct: 423 IVGYCQSGFAEDALSVFHEMRAAHMLS-TQVTFSSVLRACANTSSIKHAVQIHSLIEKST 481

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI-KCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            + + +VCN++ID YAKCG +  A +VF++I +C   +V+WN+++ A+A+HG    ALEL
Sbjct: 482 FNNDTIVCNSLIDTYAKCGFIRDALKVFESIVEC--DVVSWNSIISAYALHGRATNALEL 539

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVVDLLG 358
           F++M ++ +K +DV++++ L  C   GLV+ G+ LFNSM  +  +KP+M+HY  +V LLG
Sbjct: 540 FDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLG 599

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAGRL +A   +  +      ++W+ LL +C ++ +V +   A+ K++++  ++   +VL
Sbjct: 600 RAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVL 659

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YAA    D+V   RK+M+N  VKK  G S++E+ G +H F      H   R I   
Sbjct: 660 LSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAM 719

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           L+ +  K    GY    + VLHD+ EEEK   L  HSE+LA+A+GL  T     I++ KN
Sbjct: 720 LEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKN 779

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LR C DCH + K+ISK+  REIIVRD  RFH F++G CSC DYW
Sbjct: 780 LRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 184/388 (47%), Gaps = 14/388 (3%)

Query: 7   LLQKCSSNG---AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
            LQ+C + G   A   +H + +Q      G  Q   F   + ++ FYA   L  LA A  
Sbjct: 51  FLQRCIARGDARAGRAVHARVVQ----RGGVAQLDTF-CANVLLNFYA--KLGPLATARR 103

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
           LF  +   +   F  +++G A   +   A+  +R++ R  H  +    +  LK    + A
Sbjct: 104 LFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDA 163

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
                 IH+   + G   +A +GT L+D Y+  G +  A+ VFD +  +D  +W A+++ 
Sbjct: 164 PGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSC 223

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            ++ ++   A++ F +M+M G FKPN   +  AL A   L +   G  IH    +   D 
Sbjct: 224 YSENDIPEYALNTFSKMRMTG-FKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDT 282

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
              V  A++DMYAKCG ++ A  +F+ I     ++ W+ ++  +A      +A E+F +M
Sbjct: 283 EPHVGGALLDMYAKCGDIEDAHAIFEMIP-HDDVILWSFLISRYAQSCQNEQAFEMFLRM 341

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363
            R+ V P++ S    L AC +   ++ G ++ N     G +  +    +++D+  +   +
Sbjct: 342 MRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNM 401

Query: 364 QEACDIVKSVSMGTDMVLWQTLL-GACQ 390
           + + +I  S+    + V W T++ G CQ
Sbjct: 402 ENSLEIFSSLQDANE-VSWNTIIVGYCQ 428


>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
           [Vitis vinifera]
          Length = 523

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 192/531 (36%), Positives = 306/531 (57%), Gaps = 45/531 (8%)

Query: 86  SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145
           SS+P N    Y   L        L C   L+AC          Q H+ +++ G+     L
Sbjct: 4   SSRPQN----YSPFLGILSDHQKLNC--ILEACKFSSDFRTAFQSHAKIIKFGYGTYPSL 57

Query: 146 GTTLLDVYA---------------------------------KVGEIVSAKKVFDEMGVR 172
            T+L+  YA                                 KVGE   AK+VF +M  R
Sbjct: 58  ITSLVSTYAHCDCLDLAHQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRR 117

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232
           D+ +WN++I G  +     EA+  F+ M    V +P+  T    +  C  LG+    + +
Sbjct: 118 DVVTWNSMIGGCVRNERFEEALRFFREMLNSNV-EPDGFTFASVINGCARLGSSHHAELV 176

Query: 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292
           H  + E+++ +N ++ +A+ID+Y+KCG ++ A +VF++I+    +  WN+M+   A+HG 
Sbjct: 177 HGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQ-HDDVSVWNSMINGLAIHGL 235

Query: 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYG 351
              A+ +F QM    V PD ++++  L AC+H GLV+ G R F+ M  +  ++P ++HYG
Sbjct: 236 ALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYG 295

Query: 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411
           ++VDLLGRAG ++EA  ++K++ M  D+V+W+ LL AC+ + + E+ E+A  K+  +   
Sbjct: 296 AMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHL--- 352

Query: 412 NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVK 471
           N GD++LLSN+Y + E+WD   RVR+ MK   V+K  G S++E+GGVIH+F   D+SH +
Sbjct: 353 NSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPE 412

Query: 472 WREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEAT 531
              IY+ L+ ++ + K  G+   T  VL D+ +EE+E  L  HSEKLA+A+ ++ TS  T
Sbjct: 413 TGAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGT 472

Query: 532 SIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            I+V KNLR C DCH  +K++S++ +R IIVRDR+RFH+F+ G CSC+DYW
Sbjct: 473 EIRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 523



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 127/237 (53%), Gaps = 2/237 (0%)

Query: 51  ALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT 110
           +L  + E  +A  +FR++       +N+++ G   + +   A+ ++R+ML  +   D  T
Sbjct: 97  SLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFT 156

Query: 111 CSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170
            +  +  CAR+ +      +H  ++      + +L + L+D+Y+K G I +AKKVF+ + 
Sbjct: 157 FASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQ 216

Query: 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230
             D++ WN++I GLA   LA +A+ +F +M+ME V  P+ +T +G L AC H G  ++G 
Sbjct: 217 HDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESV-SPDSITFIGILTACSHCGLVEQGR 275

Query: 231 KIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
           +  + +R    +   +    A++D+  + GL+++A+ +   +     +V W  ++ A
Sbjct: 276 RYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSA 332


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 185/535 (34%), Positives = 311/535 (58%), Gaps = 18/535 (3%)

Query: 64   LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123
            LFRQ+       +N ++ GL  +     A+    +M+      + LT S AL   + +  
Sbjct: 476  LFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSV 535

Query: 124  LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM-------------- 169
            L    QIH+ VL+ G L D  +  +L+D+Y K GE+  A  +F  +              
Sbjct: 536  LGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCD 595

Query: 170  -GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
              V +  SW+++++G  Q     +A+  F  M    V + ++ T+   ++AC   G  + 
Sbjct: 596  DAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQV-EVDKFTLTSVVSACASAGVLEL 654

Query: 229  GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288
            G ++H YI++    ++V + +++IDMY KCG L+ A+ +F+  K R ++V W +M+   A
Sbjct: 655  GRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDR-NVVLWTSMISGCA 713

Query: 289  VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC-GVKPNM 347
            +HG G  A+ LFE M   G+ P++VS++  L AC+HAGL+++G + F  M    G++P  
Sbjct: 714  LHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGA 773

Query: 348  KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407
            +H+  +VDL GRAGRL E  + + + ++     +W++ L +C+++ ++EM     +KL+E
Sbjct: 774  EHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLE 833

Query: 408  MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDK 467
            +   + G ++L S++ A   RW++  ++R  M+ R VKK P  S+I++   +H F   D+
Sbjct: 834  LEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDR 893

Query: 468  SHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLIST 527
            SH +  +IY  LDE++ ++KE GY+   + V+ D+ +E+++  L YHSEKLA+A+G+IST
Sbjct: 894  SHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIIST 953

Query: 528  SEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            +  T I+V KNLR+C DCH+ IK  S++  REII+RD  RFH FK G CSC DYW
Sbjct: 954  APGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 172/395 (43%), Gaps = 50/395 (12%)

Query: 46  IIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR 105
           ++  YA S    L  AH +F +I       +  ++ G A      + +  + +M      
Sbjct: 327 LLNLYAKS--QNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 106 SDALTCSFALKACARVLALFETLQ-IHSHVLRHGFLADALLGTTLLDVYAK--------- 155
            +  T S  LK+C+  +      + IH  +LR+G   DA+L  ++LD Y K         
Sbjct: 385 PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEK 444

Query: 156 ----------------------VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
                                 +G++  +  +F ++  +D ASWN +I GL +      A
Sbjct: 445 LFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVA 504

Query: 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253
           ++L  +M   G    N++T   AL     L     G +IH  + +  +  +  V N++ID
Sbjct: 505 LELLYKMVAAGP-AFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLID 563

Query: 254 MYAKCGLLDKAFEVFDNIKCRKSL--------------VTWNTMVMAFAVHGDGPRALEL 299
           MY KCG ++KA  +F ++    S+              V+W++MV  +  +G    AL+ 
Sbjct: 564 MYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKT 623

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           F  M  + V+ D  +  + + AC  AG+++ G ++   +   G   ++    S++D+  +
Sbjct: 624 FSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVK 683

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394
            G L +A  I    +   ++VLW +++  C L+G 
Sbjct: 684 CGSLNDAWLIFNQ-AKDRNVVLWTSMISGCALHGQ 717



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 103/175 (58%), Gaps = 5/175 (2%)

Query: 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNL 189
           +H+ ++++G +   + G  LL++YAK   +  A K+F+E+   D+ SW  LI+G A+  L
Sbjct: 310 LHAKLIKNGCVG--IRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGL 367

Query: 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAAC-GHLGAWKEGDKIHEYIREERLDMNVVVC 248
           +++ + LF +M+ +GV  PN+ T+   L +C  ++   + G  IH +I    LD++ V+ 
Sbjct: 368 SADVLGLFTKMQDQGVC-PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLN 426

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
           N+++D Y KC     A ++F  +   K  V+WN M+ ++   GD  ++++LF Q+
Sbjct: 427 NSILDYYVKCRCFGYAEKLF-GLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQL 480


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,754,076,869
Number of Sequences: 23463169
Number of extensions: 354708120
Number of successful extensions: 971184
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10354
Number of HSP's successfully gapped in prelim test: 1656
Number of HSP's that attempted gapping in prelim test: 807719
Number of HSP's gapped (non-prelim): 49268
length of query: 582
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 434
effective length of database: 8,886,646,355
effective search space: 3856804518070
effective search space used: 3856804518070
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)