BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007998
         (582 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EIV|A Chain A, 1.37 Angstrom Resolution Crystal Structure Of Apo-Form Of
           A Putative Deoxyribose-Phosphate Aldolase From
           Toxoplasma Gondii Me49
 pdb|4EIV|B Chain B, 1.37 Angstrom Resolution Crystal Structure Of Apo-Form Of
           A Putative Deoxyribose-Phosphate Aldolase From
           Toxoplasma Gondii Me49
          Length = 297

 Score = 28.9 bits (63), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 11/52 (21%)

Query: 393 GDVEMAEIA-----------SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
           GDV MAE A            R +V       G F LL  L   YE WD VG
Sbjct: 239 GDVHMAETADFLMQMIFENGPRSIVRDKFRVGGGFNLLKELRDCYESWDSVG 290


>pdb|3QYQ|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of A Putative
           Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
           Me49
 pdb|3QYQ|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of A Putative
           Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
           Me49
 pdb|3QYQ|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of A Putative
           Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
           Me49
 pdb|3QYQ|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of A Putative
           Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
           Me49
          Length = 293

 Score = 28.5 bits (62), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 11/52 (21%)

Query: 393 GDVEMAEIA-----------SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433
           GDV MAE A            R +V       G F LL  L   YE WD VG
Sbjct: 240 GDVHMAETADFLMQMIFENGPRSIVRDKFRVGGGFNLLKELRDCYESWDSVG 291


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,096,755
Number of Sequences: 62578
Number of extensions: 630752
Number of successful extensions: 1211
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 4
length of query: 582
length of database: 14,973,337
effective HSP length: 104
effective length of query: 478
effective length of database: 8,465,225
effective search space: 4046377550
effective search space used: 4046377550
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)