Query 007998
Match_columns 582
No_of_seqs 675 out of 4377
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 18:07:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2E-118 4E-123 970.0 63.9 572 2-582 124-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 6E-113 1E-117 948.5 63.1 567 2-580 289-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 1.2E-70 2.6E-75 610.4 43.2 533 3-557 88-653 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.6E-60 3.4E-65 520.0 51.2 523 4-561 373-912 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.5E-60 7.7E-65 517.3 53.9 438 2-449 438-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.2E-60 6.9E-65 515.0 43.0 486 70-577 84-583 (697)
7 PF14432 DYW_deaminase: DYW fa 100.0 3.1E-31 6.8E-36 213.3 8.0 106 449-572 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-25 2.9E-30 254.2 48.0 413 17-444 445-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-25 4.4E-30 252.7 48.4 412 17-443 411-833 (899)
10 KOG4626 O-linked N-acetylgluco 99.9 1.1E-20 2.3E-25 184.2 30.1 377 46-432 119-509 (966)
11 PRK11447 cellulose synthase su 99.9 1.6E-18 3.4E-23 198.3 44.2 386 50-443 276-701 (1157)
12 PRK11447 cellulose synthase su 99.9 2.2E-18 4.8E-23 197.1 45.4 410 17-445 283-744 (1157)
13 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-18 4.6E-23 185.2 42.0 251 188-442 308-571 (615)
14 KOG4626 O-linked N-acetylgluco 99.9 7.6E-20 1.6E-24 178.3 27.5 363 73-445 116-488 (966)
15 PRK11788 tetratricopeptide rep 99.9 1.7E-19 3.7E-24 183.8 30.5 292 153-449 45-354 (389)
16 PRK11788 tetratricopeptide rep 99.9 7.1E-19 1.5E-23 179.2 34.1 293 83-408 45-347 (389)
17 PRK15174 Vi polysaccharide exp 99.9 1.4E-17 3E-22 178.4 40.8 350 56-413 19-386 (656)
18 TIGR00990 3a0801s09 mitochondr 99.8 5.9E-17 1.3E-21 174.1 41.7 360 47-412 131-575 (615)
19 PRK15174 Vi polysaccharide exp 99.8 6.5E-17 1.4E-21 173.3 39.3 329 110-445 44-384 (656)
20 PRK10049 pgaA outer membrane p 99.8 5.2E-17 1.1E-21 177.8 39.4 386 51-444 23-458 (765)
21 PRK09782 bacteriophage N4 rece 99.8 1.4E-15 3.1E-20 166.7 48.5 215 224-444 490-708 (987)
22 PRK14574 hmsH outer membrane p 99.8 9.3E-16 2E-20 164.9 43.7 392 46-444 38-515 (822)
23 PRK10049 pgaA outer membrane p 99.8 1E-15 2.2E-20 167.7 44.0 386 18-416 30-464 (765)
24 PRK14574 hmsH outer membrane p 99.8 3E-14 6.4E-19 153.4 41.8 389 17-415 48-520 (822)
25 PRK09782 bacteriophage N4 rece 99.7 9.9E-14 2.1E-18 152.4 40.5 384 48-445 318-743 (987)
26 KOG4422 Uncharacterized conser 99.7 4.1E-13 8.8E-18 126.5 36.5 399 6-445 121-593 (625)
27 KOG2076 RNA polymerase III tra 99.6 1.5E-12 3.3E-17 133.7 33.9 333 118-453 149-523 (895)
28 KOG2003 TPR repeat-containing 99.6 3.3E-13 7.1E-18 127.8 26.8 398 21-428 219-709 (840)
29 KOG2002 TPR-containing nuclear 99.6 1.7E-12 3.8E-17 134.2 34.0 414 19-444 252-747 (1018)
30 PF13429 TPR_15: Tetratricopep 99.6 2.2E-15 4.8E-20 145.6 10.9 257 180-440 14-275 (280)
31 KOG2002 TPR-containing nuclear 99.6 2.1E-11 4.6E-16 126.3 38.7 367 71-444 268-677 (1018)
32 KOG1915 Cell cycle control pro 99.5 1.8E-10 3.9E-15 110.3 36.3 392 56-452 87-510 (677)
33 KOG4422 Uncharacterized conser 99.5 4E-11 8.7E-16 113.3 31.6 353 73-443 116-552 (625)
34 TIGR00540 hemY_coli hemY prote 99.5 4.4E-11 9.5E-16 121.8 33.5 282 120-407 96-398 (409)
35 PRK10747 putative protoheme IX 99.5 1.8E-11 3.9E-16 123.9 30.1 220 183-409 162-391 (398)
36 KOG0547 Translocase of outer m 99.5 4.5E-11 9.7E-16 114.9 30.5 357 76-440 118-564 (606)
37 PF13429 TPR_15: Tetratricopep 99.5 7.7E-14 1.7E-18 134.9 12.0 256 80-339 15-275 (280)
38 PRK10747 putative protoheme IX 99.5 5.9E-11 1.3E-15 120.2 32.5 276 156-441 97-389 (398)
39 KOG1126 DNA-binding cell divis 99.5 1.9E-12 4.1E-17 129.1 20.3 278 158-444 334-622 (638)
40 KOG2076 RNA polymerase III tra 99.5 1.2E-10 2.6E-15 120.1 33.6 351 53-406 150-553 (895)
41 KOG0495 HAT repeat protein [RN 99.5 2.6E-09 5.7E-14 106.3 41.0 409 19-443 392-847 (913)
42 TIGR00540 hemY_coli hemY prote 99.5 5.6E-11 1.2E-15 121.0 29.8 293 75-373 84-396 (409)
43 KOG1155 Anaphase-promoting com 99.5 4.5E-10 9.6E-15 107.5 32.7 314 118-441 174-494 (559)
44 KOG1915 Cell cycle control pro 99.5 1.7E-09 3.7E-14 103.7 36.3 377 56-440 155-583 (677)
45 KOG1155 Anaphase-promoting com 99.5 4.7E-10 1E-14 107.3 31.8 358 32-410 158-538 (559)
46 KOG0495 HAT repeat protein [RN 99.5 3E-09 6.4E-14 106.0 38.4 430 7-455 412-891 (913)
47 KOG2003 TPR repeat-containing 99.4 3.1E-10 6.7E-15 107.9 28.6 389 48-442 206-689 (840)
48 KOG1126 DNA-binding cell divis 99.4 2.6E-11 5.7E-16 121.1 22.3 278 123-412 334-624 (638)
49 COG2956 Predicted N-acetylgluc 99.4 4.9E-10 1.1E-14 102.5 27.2 312 86-463 48-368 (389)
50 KOG1173 Anaphase-promoting com 99.4 1.5E-09 3.3E-14 106.5 31.3 387 48-441 54-517 (611)
51 TIGR02521 type_IV_pilW type IV 99.4 1.7E-10 3.8E-15 108.1 24.1 197 244-441 30-231 (234)
52 COG3071 HemY Uncharacterized e 99.3 5.8E-09 1.3E-13 98.6 31.0 285 86-406 97-388 (400)
53 COG2956 Predicted N-acetylgluc 99.3 2.2E-09 4.8E-14 98.3 25.5 252 185-440 46-309 (389)
54 PRK12370 invasion protein regu 99.3 8.2E-10 1.8E-14 116.9 26.2 263 173-443 255-536 (553)
55 COG3071 HemY Uncharacterized e 99.3 5.1E-09 1.1E-13 99.0 28.2 275 156-441 97-389 (400)
56 KOG1840 Kinesin light chain [C 99.3 2.1E-09 4.6E-14 108.7 27.0 230 211-440 200-477 (508)
57 KOG1174 Anaphase-promoting com 99.3 1.3E-08 2.9E-13 96.2 29.7 301 109-415 195-507 (564)
58 KOG4318 Bicoid mRNA stability 99.3 1.3E-10 2.8E-15 119.2 17.5 263 195-499 11-275 (1088)
59 PF13041 PPR_2: PPR repeat fam 99.3 1.2E-11 2.6E-16 84.2 6.6 50 275-324 1-50 (50)
60 PF13041 PPR_2: PPR repeat fam 99.3 8.3E-12 1.8E-16 85.1 5.7 50 71-120 1-50 (50)
61 KOG0547 Translocase of outer m 99.3 2.5E-08 5.4E-13 96.4 30.0 352 48-409 120-567 (606)
62 KOG4318 Bicoid mRNA stability 99.2 1.3E-09 2.9E-14 112.0 22.4 249 94-361 11-285 (1088)
63 PRK12370 invasion protein regu 99.2 8.7E-09 1.9E-13 109.1 28.8 240 123-373 276-532 (553)
64 TIGR02521 type_IV_pilW type IV 99.2 3.8E-09 8.3E-14 98.9 23.5 193 73-270 31-228 (234)
65 KOG1129 TPR repeat-containing 99.2 1.1E-09 2.5E-14 100.2 17.3 232 178-444 227-460 (478)
66 KOG1173 Anaphase-promoting com 99.2 4.7E-08 1E-12 96.3 28.0 280 139-423 240-533 (611)
67 PRK11189 lipoprotein NlpI; Pro 99.1 1.6E-08 3.5E-13 98.1 23.2 213 224-444 40-267 (296)
68 KOG1840 Kinesin light chain [C 99.1 1.5E-08 3.1E-13 102.7 22.8 232 176-407 201-478 (508)
69 KOG4162 Predicted calmodulin-b 99.1 5E-07 1.1E-11 92.4 31.8 399 34-443 319-784 (799)
70 KOG3785 Uncharacterized conser 99.1 4.1E-07 8.9E-12 84.6 28.4 380 51-446 31-494 (557)
71 KOG1129 TPR repeat-containing 99.1 9.2E-09 2E-13 94.3 16.9 220 114-340 229-457 (478)
72 PRK11189 lipoprotein NlpI; Pro 99.1 1.7E-07 3.7E-12 91.0 26.5 219 188-413 40-270 (296)
73 KOG1174 Anaphase-promoting com 99.0 2.5E-06 5.4E-11 81.2 32.3 282 172-487 230-519 (564)
74 KOG2376 Signal recognition par 99.0 2.1E-05 4.4E-10 78.5 38.1 395 17-437 26-515 (652)
75 KOG1156 N-terminal acetyltrans 99.0 1.5E-05 3.2E-10 80.4 37.0 388 56-453 55-484 (700)
76 COG3063 PilF Tfp pilus assembl 99.0 9.3E-08 2E-12 84.0 17.9 163 279-444 37-204 (250)
77 KOG2047 mRNA splicing factor [ 98.9 2.8E-05 6.2E-10 78.2 35.9 351 75-437 104-535 (835)
78 cd05804 StaR_like StaR_like; a 98.9 3.7E-06 8.1E-11 84.5 31.2 256 183-443 52-337 (355)
79 KOG0548 Molecular co-chaperone 98.9 6.6E-07 1.4E-11 88.0 23.6 367 56-443 16-456 (539)
80 KOG2047 mRNA splicing factor [ 98.9 2.9E-05 6.2E-10 78.2 35.0 379 56-440 152-613 (835)
81 PF12569 NARP1: NMDA receptor- 98.9 5.8E-06 1.3E-10 85.1 31.0 68 83-153 14-82 (517)
82 KOG1156 N-terminal acetyltrans 98.9 1.9E-05 4.1E-10 79.6 32.9 387 48-444 13-436 (700)
83 PF04733 Coatomer_E: Coatomer 98.9 3.7E-08 8E-13 94.2 13.6 244 184-441 11-264 (290)
84 COG3063 PilF Tfp pilus assembl 98.9 1.5E-06 3.2E-11 76.6 21.9 200 177-412 38-240 (250)
85 KOG1125 TPR repeat-containing 98.9 7.9E-08 1.7E-12 95.2 15.6 217 222-441 297-526 (579)
86 cd05804 StaR_like StaR_like; a 98.8 1.9E-05 4.1E-10 79.4 33.0 197 73-272 6-213 (355)
87 KOG0624 dsRNA-activated protei 98.8 1E-05 2.2E-10 75.3 27.5 311 78-415 43-377 (504)
88 PF12569 NARP1: NMDA receptor- 98.8 4.9E-06 1.1E-10 85.6 27.5 173 317-491 199-393 (517)
89 PRK04841 transcriptional regul 98.8 1.7E-05 3.7E-10 90.3 33.5 323 120-443 386-761 (903)
90 KOG0985 Vesicle coat protein c 98.8 3.1E-05 6.8E-10 81.5 31.3 370 19-439 963-1367(1666)
91 KOG4340 Uncharacterized conser 98.7 8.7E-06 1.9E-10 74.3 23.4 379 48-441 15-442 (459)
92 KOG1127 TPR repeat-containing 98.7 6.7E-06 1.5E-10 86.5 25.4 410 21-439 474-993 (1238)
93 PRK04841 transcriptional regul 98.7 5.9E-05 1.3E-09 86.0 35.6 356 56-411 355-763 (903)
94 KOG0624 dsRNA-activated protei 98.7 0.00012 2.7E-09 68.3 30.2 295 55-373 51-367 (504)
95 KOG4162 Predicted calmodulin-b 98.7 0.00016 3.5E-09 74.6 33.7 383 19-414 339-789 (799)
96 KOG3616 Selective LIM binding 98.7 7.7E-06 1.7E-10 83.1 23.9 190 220-436 742-931 (1636)
97 KOG3617 WD40 and TPR repeat-co 98.7 2.7E-05 5.9E-10 80.3 27.5 350 47-437 730-1169(1416)
98 PF04733 Coatomer_E: Coatomer 98.7 1.6E-06 3.4E-11 83.1 17.8 84 328-412 183-269 (290)
99 PRK10370 formate-dependent nit 98.6 3.8E-06 8.3E-11 75.9 17.8 147 285-444 24-175 (198)
100 KOG4340 Uncharacterized conser 98.6 9.1E-06 2E-10 74.2 19.8 309 108-437 10-334 (459)
101 KOG3785 Uncharacterized conser 98.6 0.00011 2.3E-09 68.9 26.9 214 80-303 29-245 (557)
102 KOG1070 rRNA processing protei 98.6 1.6E-05 3.6E-10 86.4 24.3 232 106-339 1455-1698(1710)
103 TIGR03302 OM_YfiO outer membra 98.6 5.7E-06 1.2E-10 77.7 18.8 182 243-443 31-233 (235)
104 KOG1070 rRNA processing protei 98.6 6.3E-06 1.4E-10 89.5 20.4 197 244-445 1457-1666(1710)
105 PF12854 PPR_1: PPR repeat 98.6 1.1E-07 2.5E-12 58.0 4.4 33 138-170 2-34 (34)
106 KOG2376 Signal recognition par 98.6 0.00021 4.6E-09 71.5 29.3 340 51-405 85-517 (652)
107 KOG3616 Selective LIM binding 98.5 0.00013 2.7E-09 74.6 27.6 254 156-443 745-1025(1636)
108 PRK15359 type III secretion sy 98.5 3E-06 6.5E-11 72.4 14.2 122 298-424 14-137 (144)
109 PLN02789 farnesyltranstransfer 98.5 5.1E-05 1.1E-09 73.7 24.2 233 176-440 39-300 (320)
110 KOG1128 Uncharacterized conser 98.5 3.1E-05 6.7E-10 79.2 22.7 191 240-445 393-585 (777)
111 KOG1128 Uncharacterized conser 98.5 2.2E-05 4.7E-10 80.3 21.6 217 139-373 394-613 (777)
112 KOG3617 WD40 and TPR repeat-co 98.5 4.8E-05 1E-09 78.6 23.9 337 69-440 722-1107(1416)
113 KOG1125 TPR repeat-containing 98.5 1.3E-05 2.7E-10 79.9 18.7 245 184-434 295-563 (579)
114 PF12854 PPR_1: PPR repeat 98.5 2.4E-07 5.1E-12 56.6 4.2 32 240-271 2-33 (34)
115 PRK15359 type III secretion sy 98.5 3.6E-06 7.9E-11 71.9 12.8 108 333-444 14-123 (144)
116 PRK15179 Vi polysaccharide bio 98.4 3E-05 6.5E-10 83.0 21.1 158 274-440 83-243 (694)
117 KOG0548 Molecular co-chaperone 98.4 9.3E-05 2E-09 73.3 22.4 348 81-443 10-422 (539)
118 KOG0985 Vesicle coat protein c 98.4 0.00041 8.9E-09 73.5 28.0 287 78-398 1053-1373(1666)
119 PLN02789 farnesyltranstransfer 98.4 0.00027 5.9E-09 68.7 25.4 210 144-359 38-267 (320)
120 PRK10370 formate-dependent nit 98.4 4.2E-05 9.1E-10 69.1 18.5 154 252-416 23-181 (198)
121 PRK14720 transcript cleavage f 98.4 0.00011 2.5E-09 79.4 23.6 233 142-424 30-268 (906)
122 TIGR03302 OM_YfiO outer membra 98.4 7.1E-05 1.5E-09 70.3 20.0 54 320-373 174-229 (235)
123 COG5010 TadD Flp pilus assembl 98.3 6.9E-05 1.5E-09 67.7 18.4 117 318-435 106-224 (257)
124 COG4783 Putative Zn-dependent 98.3 0.00026 5.7E-09 69.6 23.2 177 260-440 252-435 (484)
125 PRK15363 pathogenicity island 98.3 7.1E-06 1.5E-10 69.0 10.1 95 348-442 36-132 (157)
126 KOG1127 TPR repeat-containing 98.3 0.00031 6.6E-09 74.5 23.8 107 330-438 801-909 (1238)
127 KOG3081 Vesicle coat complex C 98.2 0.00033 7.2E-09 63.4 20.2 140 285-433 116-261 (299)
128 TIGR02552 LcrH_SycD type III s 98.2 1.5E-05 3.3E-10 67.5 11.4 97 347-443 17-115 (135)
129 KOG3060 Uncharacterized conser 98.2 0.00047 1E-08 62.0 20.7 169 247-417 54-229 (289)
130 COG5010 TadD Flp pilus assembl 98.2 0.0002 4.4E-09 64.8 18.7 158 142-303 66-228 (257)
131 PRK14720 transcript cleavage f 98.2 0.0011 2.3E-08 72.1 27.3 233 109-390 32-268 (906)
132 PRK15179 Vi polysaccharide bio 98.2 0.00038 8.2E-09 74.7 23.8 143 241-386 82-229 (694)
133 COG4783 Putative Zn-dependent 98.2 0.0015 3.3E-08 64.4 24.9 116 181-299 313-430 (484)
134 TIGR00756 PPR pentatricopeptid 98.1 3.4E-06 7.4E-11 52.2 3.8 35 74-108 1-35 (35)
135 KOG1914 mRNA cleavage and poly 98.1 0.013 2.9E-07 58.6 34.3 398 40-442 17-501 (656)
136 TIGR00756 PPR pentatricopeptid 98.1 4.6E-06 9.9E-11 51.6 4.2 34 278-311 1-34 (35)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00011 2.3E-09 73.0 14.2 122 315-440 172-295 (395)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00016 3.6E-09 71.6 15.4 125 145-272 171-295 (395)
139 PF13812 PPR_3: Pentatricopept 98.0 7.9E-06 1.7E-10 50.2 3.8 33 74-106 2-34 (34)
140 TIGR02552 LcrH_SycD type III s 98.0 0.00024 5.1E-09 60.1 13.4 94 211-305 18-113 (135)
141 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.2E-10 49.0 4.3 33 175-208 2-34 (34)
142 KOG3081 Vesicle coat complex C 97.9 0.0085 1.9E-07 54.6 22.2 154 252-412 115-275 (299)
143 PF09976 TPR_21: Tetratricopep 97.9 0.00085 1.8E-08 57.5 15.1 113 290-404 24-143 (145)
144 PF09976 TPR_21: Tetratricopep 97.8 0.001 2.3E-08 56.9 15.4 123 177-302 15-143 (145)
145 KOG3060 Uncharacterized conser 97.8 0.0031 6.8E-08 56.9 18.2 162 280-444 55-222 (289)
146 cd00189 TPR Tetratricopeptide 97.8 0.00018 3.9E-09 55.8 9.8 93 350-442 3-97 (100)
147 PF12895 Apc3: Anaphase-promot 97.8 2.6E-05 5.7E-10 59.7 4.3 78 360-438 2-83 (84)
148 KOG2053 Mitochondrial inherita 97.8 0.075 1.6E-06 56.6 36.8 379 56-448 57-508 (932)
149 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00049 1.1E-08 56.5 12.2 98 317-414 7-111 (119)
150 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00033 7.3E-09 57.5 10.9 97 348-444 3-107 (119)
151 PF13414 TPR_11: TPR repeat; P 97.8 7.7E-05 1.7E-09 54.6 6.2 65 378-442 2-67 (69)
152 PLN03088 SGT1, suppressor of 97.7 0.00047 1E-08 68.6 13.2 98 321-419 11-110 (356)
153 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9.1E-10 45.7 3.4 31 175-205 1-31 (31)
154 PF01535 PPR: PPR repeat; Int 97.7 3.9E-05 8.5E-10 45.8 3.2 31 74-104 1-31 (31)
155 PF13432 TPR_16: Tetratricopep 97.6 0.00013 2.7E-09 52.7 5.6 59 385-443 3-61 (65)
156 PRK02603 photosystem I assembl 97.6 0.0022 4.9E-08 56.7 13.8 131 276-428 34-166 (172)
157 PLN03088 SGT1, suppressor of 97.6 0.0013 2.8E-08 65.5 13.5 101 283-386 8-110 (356)
158 KOG0553 TPR repeat-containing 97.6 0.00053 1.1E-08 63.4 9.7 91 322-413 91-183 (304)
159 PRK02603 photosystem I assembl 97.6 0.00096 2.1E-08 59.0 11.2 95 348-442 36-149 (172)
160 PF04840 Vps16_C: Vps16, C-ter 97.5 0.099 2.2E-06 50.9 27.2 121 249-389 181-301 (319)
161 KOG0550 Molecular chaperone (D 97.5 0.003 6.5E-08 60.9 14.2 165 275-444 166-352 (486)
162 COG4235 Cytochrome c biogenesi 97.5 0.0023 4.9E-08 59.7 13.1 105 344-448 153-262 (287)
163 PF13432 TPR_16: Tetratricopep 97.5 0.00028 6.1E-09 50.8 5.9 61 353-413 3-65 (65)
164 PRK10153 DNA-binding transcrip 97.5 0.0044 9.4E-08 64.6 16.7 66 378-444 419-484 (517)
165 PRK15363 pathogenicity island 97.4 0.005 1.1E-07 52.1 13.1 93 176-271 37-129 (157)
166 cd00189 TPR Tetratricopeptide 97.4 0.0017 3.7E-08 50.2 10.0 88 322-410 10-99 (100)
167 CHL00033 ycf3 photosystem I as 97.4 0.0017 3.7E-08 57.2 10.7 93 347-439 35-139 (168)
168 KOG2796 Uncharacterized conser 97.4 0.007 1.5E-07 54.9 14.2 127 77-203 181-315 (366)
169 PRK15331 chaperone protein Sic 97.4 0.0011 2.3E-08 56.3 8.5 88 354-441 44-133 (165)
170 PF06239 ECSIT: Evolutionarily 97.4 0.0045 9.7E-08 54.9 12.6 118 207-340 44-167 (228)
171 KOG0553 TPR repeat-containing 97.4 0.0018 3.9E-08 60.0 10.5 97 284-384 88-187 (304)
172 PF13371 TPR_9: Tetratricopept 97.4 0.00061 1.3E-08 50.4 6.3 58 387-444 3-60 (73)
173 PF14559 TPR_19: Tetratricopep 97.4 0.00028 6.1E-09 51.3 4.4 53 390-442 2-54 (68)
174 PF05843 Suf: Suppressor of fo 97.4 0.0091 2E-07 57.3 15.9 133 278-412 2-140 (280)
175 PF14938 SNAP: Soluble NSF att 97.3 0.18 3.9E-06 48.6 24.6 92 282-373 160-263 (282)
176 COG3898 Uncharacterized membra 97.3 0.19 4.2E-06 48.6 27.0 274 156-441 97-391 (531)
177 PF05843 Suf: Suppressor of fo 97.3 0.0053 1.1E-07 59.0 13.4 127 176-305 3-135 (280)
178 PF12895 Apc3: Anaphase-promot 97.3 0.00068 1.5E-08 51.8 5.8 80 290-371 2-82 (84)
179 COG4700 Uncharacterized protei 97.3 0.026 5.6E-07 48.6 15.4 132 308-440 85-220 (251)
180 PRK10866 outer membrane biogen 97.2 0.11 2.3E-06 48.7 21.1 67 173-241 31-100 (243)
181 PF14559 TPR_19: Tetratricopep 97.2 0.00041 8.8E-09 50.5 3.7 58 359-416 3-62 (68)
182 KOG1130 Predicted G-alpha GTPa 97.2 0.0037 8E-08 60.2 10.8 256 183-440 26-342 (639)
183 KOG1914 mRNA cleavage and poly 97.2 0.32 7E-06 49.1 33.6 414 16-439 32-536 (656)
184 PF08579 RPM2: Mitochondrial r 97.2 0.008 1.7E-07 47.2 10.5 80 280-359 28-116 (120)
185 PRK10866 outer membrane biogen 97.2 0.08 1.7E-06 49.5 19.5 175 250-440 37-239 (243)
186 KOG1538 Uncharacterized conser 97.1 0.045 9.8E-07 55.9 18.2 50 131-201 623-672 (1081)
187 PF04840 Vps16_C: Vps16, C-ter 97.1 0.29 6.4E-06 47.6 24.7 109 313-437 178-286 (319)
188 PRK10153 DNA-binding transcrip 97.1 0.021 4.6E-07 59.5 16.6 139 274-414 334-488 (517)
189 PF14938 SNAP: Soluble NSF att 97.1 0.02 4.4E-07 55.1 15.5 26 76-101 38-63 (282)
190 PF08579 RPM2: Mitochondrial r 97.1 0.0072 1.6E-07 47.5 9.7 81 75-155 27-116 (120)
191 PF10037 MRP-S27: Mitochondria 97.1 0.019 4.1E-07 57.6 14.9 119 207-325 63-186 (429)
192 PF12688 TPR_5: Tetratrico pep 97.0 0.021 4.6E-07 46.5 12.6 107 180-288 7-117 (120)
193 PF10037 MRP-S27: Mitochondria 97.0 0.013 2.9E-07 58.6 13.5 120 307-426 61-186 (429)
194 PF13414 TPR_11: TPR repeat; P 97.0 0.0012 2.5E-08 48.2 4.6 64 347-410 3-69 (69)
195 CHL00033 ycf3 photosystem I as 97.0 0.017 3.6E-07 50.9 12.7 81 73-154 35-117 (168)
196 PF06239 ECSIT: Evolutionarily 97.0 0.0071 1.5E-07 53.7 9.6 89 274-362 44-153 (228)
197 KOG2796 Uncharacterized conser 96.9 0.11 2.3E-06 47.5 17.0 236 72-316 68-323 (366)
198 PF13371 TPR_9: Tetratricopept 96.9 0.0041 8.9E-08 45.8 6.9 64 354-417 2-67 (73)
199 PF13431 TPR_17: Tetratricopep 96.9 0.00096 2.1E-08 40.6 2.8 33 402-434 2-34 (34)
200 PRK10803 tol-pal system protei 96.9 0.007 1.5E-07 57.1 9.8 93 350-442 146-246 (263)
201 COG4700 Uncharacterized protei 96.9 0.19 4.1E-06 43.5 17.0 99 105-203 86-189 (251)
202 KOG2280 Vacuolar assembly/sort 96.9 0.8 1.7E-05 48.2 27.0 339 82-436 398-793 (829)
203 PF12688 TPR_5: Tetratrico pep 96.9 0.034 7.4E-07 45.3 12.3 104 79-182 7-114 (120)
204 KOG2041 WD40 repeat protein [G 96.8 0.79 1.7E-05 47.8 27.3 131 58-200 679-822 (1189)
205 PF13428 TPR_14: Tetratricopep 96.8 0.0029 6.3E-08 41.3 4.5 42 380-421 2-43 (44)
206 PF13281 DUF4071: Domain of un 96.8 0.2 4.4E-06 49.2 19.0 161 250-412 146-338 (374)
207 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0088 1.9E-07 59.4 8.8 64 378-441 74-140 (453)
208 KOG0550 Molecular chaperone (D 96.6 0.59 1.3E-05 45.7 20.3 45 84-129 60-104 (486)
209 PF03704 BTAD: Bacterial trans 96.5 0.077 1.7E-06 45.3 12.9 105 322-440 16-123 (146)
210 PRK10803 tol-pal system protei 96.4 0.052 1.1E-06 51.3 12.3 98 314-413 145-251 (263)
211 PF13525 YfiO: Outer membrane 96.4 0.28 6E-06 44.6 16.8 165 251-433 11-198 (203)
212 PF13525 YfiO: Outer membrane 96.4 0.7 1.5E-05 42.0 19.5 61 179-239 10-71 (203)
213 KOG1538 Uncharacterized conser 96.3 0.49 1.1E-05 48.8 18.4 80 209-298 746-825 (1081)
214 COG3898 Uncharacterized membra 96.2 1.3 2.8E-05 43.2 26.9 304 56-373 67-389 (531)
215 KOG1130 Predicted G-alpha GTPa 96.2 0.037 8E-07 53.5 10.0 259 81-340 25-343 (639)
216 KOG2053 Mitochondrial inherita 96.1 2.6 5.5E-05 45.6 37.8 157 47-204 81-256 (932)
217 KOG2280 Vacuolar assembly/sort 96.1 2.4 5.1E-05 44.9 25.6 307 77-404 441-795 (829)
218 PF13424 TPR_12: Tetratricopep 96.1 0.012 2.6E-07 44.0 4.9 61 380-440 6-73 (78)
219 PF07079 DUF1347: Protein of u 96.0 1.9 4.1E-05 43.0 30.3 409 18-440 21-522 (549)
220 KOG0543 FKBP-type peptidyl-pro 95.9 0.12 2.5E-06 50.5 11.7 64 380-443 258-321 (397)
221 PF09205 DUF1955: Domain of un 95.9 0.77 1.7E-05 37.4 14.5 139 288-445 13-152 (161)
222 COG0457 NrfG FOG: TPR repeat [ 95.8 1.4 3.1E-05 40.0 27.0 197 245-442 59-265 (291)
223 PF13424 TPR_12: Tetratricopep 95.8 0.014 3E-07 43.6 4.2 29 379-407 46-74 (78)
224 COG4235 Cytochrome c biogenesi 95.8 0.19 4.2E-06 47.2 12.2 96 173-271 155-253 (287)
225 KOG1585 Protein required for f 95.6 1.4 3.1E-05 40.0 16.4 53 383-436 194-250 (308)
226 PF12921 ATP13: Mitochondrial 95.6 0.11 2.4E-06 42.8 9.0 23 313-335 3-25 (126)
227 KOG3941 Intermediate in Toll s 95.6 0.079 1.7E-06 48.8 8.6 103 56-158 48-173 (406)
228 PF12921 ATP13: Mitochondrial 95.5 0.17 3.7E-06 41.7 9.9 48 308-355 48-96 (126)
229 KOG4555 TPR repeat-containing 95.5 0.13 2.9E-06 41.5 8.8 89 356-444 52-146 (175)
230 COG1729 Uncharacterized protei 95.4 0.12 2.5E-06 47.9 9.5 83 359-443 153-245 (262)
231 PF13512 TPR_18: Tetratricopep 95.4 0.17 3.7E-06 42.1 9.6 57 357-413 20-81 (142)
232 KOG3941 Intermediate in Toll s 95.2 0.14 3.1E-06 47.2 9.1 102 263-364 52-175 (406)
233 PF03704 BTAD: Bacterial trans 95.1 0.13 2.9E-06 43.9 8.6 70 176-247 64-138 (146)
234 KOG2041 WD40 repeat protein [G 95.1 5.3 0.00012 42.0 25.2 151 56-234 748-902 (1189)
235 PF13281 DUF4071: Domain of un 95.1 2.2 4.7E-05 42.2 17.5 72 148-220 146-227 (374)
236 COG5107 RNA14 Pre-mRNA 3'-end 95.0 4.4 9.6E-05 40.4 30.8 129 313-442 398-531 (660)
237 KOG0543 FKBP-type peptidyl-pro 94.9 0.46 9.9E-06 46.5 12.1 94 349-442 259-355 (397)
238 PRK15331 chaperone protein Sic 94.8 0.66 1.4E-05 39.7 11.5 86 184-272 47-132 (165)
239 PRK11906 transcriptional regul 94.7 0.58 1.2E-05 47.0 12.6 79 364-442 321-401 (458)
240 PF09205 DUF1955: Domain of un 94.6 1.7 3.8E-05 35.4 12.6 65 176-242 88-152 (161)
241 PRK11906 transcriptional regul 94.6 2.4 5.3E-05 42.7 16.5 157 278-436 252-430 (458)
242 PRK09687 putative lyase; Provi 94.6 4.6 9.9E-05 38.7 27.4 179 142-327 36-221 (280)
243 PLN03098 LPA1 LOW PSII ACCUMUL 94.5 0.47 1E-05 47.5 11.3 63 244-306 74-141 (453)
244 COG0457 NrfG FOG: TPR repeat [ 94.5 3.7 7.9E-05 37.2 26.1 199 211-411 60-268 (291)
245 PF10300 DUF3808: Protein of u 94.4 7.2 0.00016 40.5 24.2 156 77-237 192-374 (468)
246 PRK11619 lytic murein transgly 94.4 9.2 0.0002 41.4 30.2 114 290-405 254-372 (644)
247 PF04053 Coatomer_WDAD: Coatom 94.4 1.3 2.8E-05 45.3 14.7 158 184-374 271-429 (443)
248 PF00515 TPR_1: Tetratricopept 94.3 0.096 2.1E-06 31.6 4.1 32 380-411 2-33 (34)
249 PF07719 TPR_2: Tetratricopept 94.3 0.13 2.9E-06 30.8 4.8 33 380-412 2-34 (34)
250 COG5107 RNA14 Pre-mRNA 3'-end 94.3 6.4 0.00014 39.3 24.6 133 277-412 397-535 (660)
251 PF04184 ST7: ST7 protein; In 94.3 1.9 4E-05 43.6 14.9 153 289-452 180-334 (539)
252 COG3118 Thioredoxin domain-con 94.2 5.1 0.00011 37.8 16.8 142 286-428 143-287 (304)
253 COG4785 NlpI Lipoprotein NlpI, 94.1 3.2 6.8E-05 37.2 14.3 182 257-444 77-268 (297)
254 KOG1258 mRNA processing protei 94.1 8.5 0.00018 40.0 32.5 378 46-428 48-490 (577)
255 KOG2066 Vacuolar assembly/sort 94.1 9.9 0.00022 40.7 21.9 89 294-393 611-704 (846)
256 KOG1941 Acetylcholine receptor 94.1 1.2 2.7E-05 42.8 12.5 47 185-231 17-64 (518)
257 PF13512 TPR_18: Tetratricopep 93.9 0.25 5.3E-06 41.2 6.9 112 383-494 14-137 (142)
258 smart00299 CLH Clathrin heavy 93.8 3.5 7.6E-05 34.7 14.8 41 250-290 12-54 (140)
259 KOG2610 Uncharacterized conser 93.8 1.6 3.5E-05 41.6 12.7 154 257-413 115-283 (491)
260 PF04053 Coatomer_WDAD: Coatom 93.6 1.6 3.4E-05 44.7 13.7 58 142-204 346-403 (443)
261 smart00299 CLH Clathrin heavy 93.5 4 8.6E-05 34.3 14.7 84 113-200 12-95 (140)
262 KOG1585 Protein required for f 93.5 5.6 0.00012 36.4 14.9 144 246-403 92-251 (308)
263 COG1729 Uncharacterized protei 93.2 1.9 4.2E-05 40.1 12.2 101 314-415 144-251 (262)
264 COG4105 ComL DNA uptake lipopr 92.9 7.7 0.00017 35.9 20.7 174 255-444 44-235 (254)
265 KOG1941 Acetylcholine receptor 92.9 3.3 7.2E-05 40.0 13.3 42 155-196 18-65 (518)
266 PF10300 DUF3808: Protein of u 92.9 6.1 0.00013 41.1 16.9 158 282-441 193-375 (468)
267 KOG2610 Uncharacterized conser 92.2 1.4 3E-05 42.0 9.8 159 289-449 115-283 (491)
268 KOG2114 Vacuolar assembly/sort 92.1 5.5 0.00012 42.9 15.0 175 213-405 337-516 (933)
269 PF13170 DUF4003: Protein of u 92.0 5.2 0.00011 38.6 14.0 61 294-354 160-224 (297)
270 KOG4555 TPR repeat-containing 91.9 2.4 5.2E-05 34.6 9.5 85 184-270 53-140 (175)
271 PF13428 TPR_14: Tetratricopep 91.9 0.55 1.2E-05 30.3 5.1 37 176-214 3-39 (44)
272 KOG4234 TPR repeat-containing 91.8 0.68 1.5E-05 40.7 6.8 88 357-444 105-199 (271)
273 PF08631 SPO22: Meiosis protei 91.6 13 0.00029 35.6 23.4 18 388-405 255-272 (278)
274 PF09613 HrpB1_HrpK: Bacterial 91.5 7.6 0.00017 33.2 12.8 88 321-410 19-108 (160)
275 PF04184 ST7: ST7 protein; In 91.2 17 0.00036 37.1 16.6 17 397-413 364-380 (539)
276 COG3629 DnrI DNA-binding trans 91.2 1.2 2.7E-05 42.0 8.5 61 381-441 155-215 (280)
277 COG3118 Thioredoxin domain-con 90.8 15 0.00033 34.8 18.1 56 116-172 142-197 (304)
278 PF07035 Mic1: Colon cancer-as 90.7 10 0.00022 32.8 13.1 133 93-238 14-148 (167)
279 COG3629 DnrI DNA-binding trans 90.7 2.3 4.9E-05 40.2 9.8 77 245-321 153-236 (280)
280 PF13176 TPR_7: Tetratricopept 90.6 0.5 1.1E-05 29.0 3.7 26 382-407 2-27 (36)
281 PF13181 TPR_8: Tetratricopept 90.6 0.56 1.2E-05 28.1 3.9 31 381-411 3-33 (34)
282 KOG2114 Vacuolar assembly/sort 90.6 29 0.00063 37.7 24.9 170 49-235 340-515 (933)
283 PRK09687 putative lyase; Provi 90.5 17 0.00036 34.9 29.2 240 64-323 28-278 (280)
284 COG4105 ComL DNA uptake lipopr 90.3 15 0.00033 34.0 20.2 60 181-240 41-101 (254)
285 PF13170 DUF4003: Protein of u 90.2 7.8 0.00017 37.4 13.3 61 90-150 79-148 (297)
286 PF02259 FAT: FAT domain; Int 90.0 21 0.00046 35.3 18.0 66 377-442 144-213 (352)
287 KOG0890 Protein kinase of the 90.0 57 0.0012 40.1 24.8 310 114-443 1389-1732(2382)
288 KOG1920 IkappaB kinase complex 89.8 41 0.00088 38.3 21.8 89 274-374 932-1026(1265)
289 PF02259 FAT: FAT domain; Int 89.5 23 0.0005 35.1 22.1 149 275-425 144-304 (352)
290 KOG1920 IkappaB kinase complex 89.5 43 0.00094 38.1 24.0 53 157-221 894-946 (1265)
291 PF13176 TPR_7: Tetratricopept 89.1 0.9 1.9E-05 27.8 4.0 26 176-201 1-26 (36)
292 PF10602 RPN7: 26S proteasome 88.9 7.8 0.00017 34.2 11.4 56 145-200 38-99 (177)
293 TIGR02508 type_III_yscG type I 88.6 9.8 0.00021 29.5 9.8 88 123-215 20-107 (115)
294 PF09613 HrpB1_HrpK: Bacterial 88.2 3.6 7.7E-05 35.2 8.2 68 359-428 22-93 (160)
295 TIGR02508 type_III_yscG type I 87.9 11 0.00023 29.3 9.6 88 225-317 20-107 (115)
296 PF10602 RPN7: 26S proteasome 87.6 5.6 0.00012 35.1 9.6 63 74-136 37-101 (177)
297 PF08631 SPO22: Meiosis protei 87.5 27 0.0006 33.4 23.3 18 322-339 256-273 (278)
298 TIGR02561 HrpB1_HrpK type III 87.3 3.8 8.2E-05 34.4 7.7 51 392-442 23-73 (153)
299 PF07079 DUF1347: Protein of u 87.2 36 0.00078 34.4 27.0 332 56-405 93-521 (549)
300 COG4649 Uncharacterized protei 87.0 8.6 0.00019 33.2 9.7 49 257-305 144-195 (221)
301 PF00515 TPR_1: Tetratricopept 86.9 1.5 3.3E-05 26.1 4.1 28 278-305 2-29 (34)
302 KOG4570 Uncharacterized conser 85.1 8.1 0.00018 36.7 9.4 97 240-340 59-163 (418)
303 PF13374 TPR_10: Tetratricopep 84.8 2.4 5.3E-05 26.5 4.5 27 381-407 4-30 (42)
304 KOG1586 Protein required for f 84.4 33 0.00071 31.4 13.3 52 361-412 128-187 (288)
305 KOG0276 Vesicle coat complex C 84.3 16 0.00034 38.1 11.7 165 71-272 579-748 (794)
306 PF04097 Nic96: Nup93/Nic96; 84.2 39 0.00085 36.6 15.8 68 74-143 113-187 (613)
307 PF13431 TPR_17: Tetratricopep 84.2 1.8 4E-05 26.0 3.4 22 244-265 12-33 (34)
308 KOG4648 Uncharacterized conser 83.9 2.5 5.3E-05 40.5 5.7 109 320-434 105-216 (536)
309 COG3947 Response regulator con 83.8 40 0.00087 32.0 14.6 59 382-440 282-340 (361)
310 PF13174 TPR_6: Tetratricopept 83.7 2.3 5.1E-05 24.9 3.8 27 385-411 6-32 (33)
311 PF04097 Nic96: Nup93/Nic96; 83.5 71 0.0015 34.6 20.3 209 48-272 116-354 (613)
312 PF11207 DUF2989: Protein of u 83.4 11 0.00023 33.7 9.1 72 90-162 123-197 (203)
313 KOG1550 Extracellular protein 83.2 52 0.0011 35.2 16.1 51 393-445 378-429 (552)
314 PF14853 Fis1_TPR_C: Fis1 C-te 82.6 4 8.8E-05 27.6 4.9 33 384-416 6-38 (53)
315 KOG0890 Protein kinase of the 82.4 1.4E+02 0.003 37.1 26.4 355 49-420 1389-1796(2382)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 81.7 10 0.00022 29.2 7.1 50 370-419 33-82 (103)
317 PF00637 Clathrin: Region in C 80.9 1.9 4E-05 36.5 3.6 49 49-97 13-66 (143)
318 PF07721 TPR_4: Tetratricopept 80.9 2.2 4.7E-05 23.8 2.7 24 414-437 2-25 (26)
319 COG2976 Uncharacterized protei 80.7 41 0.00088 29.9 12.9 90 319-411 96-191 (207)
320 PF02284 COX5A: Cytochrome c o 80.7 12 0.00026 29.2 7.2 50 370-419 36-85 (108)
321 PF13374 TPR_10: Tetratricopep 80.2 4.3 9.2E-05 25.3 4.3 27 278-304 3-29 (42)
322 KOG2066 Vacuolar assembly/sort 80.0 95 0.0021 33.8 24.0 151 117-278 365-537 (846)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 80.0 14 0.00031 28.4 7.4 59 91-150 25-83 (103)
324 PF07719 TPR_2: Tetratricopept 79.8 5.1 0.00011 23.6 4.4 28 176-203 3-30 (34)
325 KOG3364 Membrane protein invol 79.8 23 0.0005 29.3 9.0 49 394-442 50-100 (149)
326 PRK10941 hypothetical protein; 79.5 11 0.00023 35.8 8.4 63 381-443 183-245 (269)
327 smart00028 TPR Tetratricopepti 79.4 3.5 7.6E-05 23.2 3.6 29 382-410 4-32 (34)
328 PF00637 Clathrin: Region in C 79.4 0.81 1.7E-05 38.8 0.8 84 114-200 13-96 (143)
329 COG4649 Uncharacterized protei 79.3 42 0.00091 29.2 14.1 87 254-340 103-195 (221)
330 PF02284 COX5A: Cytochrome c o 79.2 14 0.0003 28.8 7.2 59 295-355 28-87 (108)
331 COG2909 MalT ATP-dependent tra 79.2 1.1E+02 0.0024 33.9 23.0 195 255-452 425-657 (894)
332 PF11207 DUF2989: Protein of u 78.4 17 0.00038 32.4 8.7 72 294-366 123-197 (203)
333 PF09477 Type_III_YscG: Bacter 77.9 32 0.0007 27.1 9.5 89 121-214 19-107 (116)
334 PF14853 Fis1_TPR_C: Fis1 C-te 77.8 15 0.00032 24.9 6.4 51 415-491 3-53 (53)
335 PF07035 Mic1: Colon cancer-as 77.8 47 0.001 28.9 16.1 132 61-202 17-148 (167)
336 PF06552 TOM20_plant: Plant sp 76.4 9.9 0.00022 33.2 6.5 45 395-439 51-99 (186)
337 PF14669 Asp_Glu_race_2: Putat 76.3 55 0.0012 29.0 13.2 58 214-271 136-207 (233)
338 TIGR02561 HrpB1_HrpK type III 75.3 50 0.0011 28.0 12.0 49 324-374 22-71 (153)
339 PF13174 TPR_6: Tetratricopept 75.1 3.5 7.5E-05 24.1 2.6 29 415-443 2-30 (33)
340 KOG1586 Protein required for f 74.2 72 0.0016 29.3 13.9 86 326-411 128-227 (288)
341 PF13181 TPR_8: Tetratricopept 74.0 6.8 0.00015 23.1 3.7 28 414-441 2-29 (34)
342 PF07721 TPR_4: Tetratricopept 73.9 6.9 0.00015 21.7 3.4 21 249-269 5-25 (26)
343 COG1747 Uncharacterized N-term 73.8 1.2E+02 0.0025 31.5 22.6 165 244-413 65-239 (711)
344 KOG4570 Uncharacterized conser 73.3 30 0.00065 33.1 9.2 99 137-240 58-165 (418)
345 PRK13800 putative oxidoreducta 72.3 1.9E+02 0.0041 33.2 25.6 258 161-441 622-880 (897)
346 KOG4648 Uncharacterized conser 72.2 13 0.00028 35.8 6.6 86 284-379 104-198 (536)
347 KOG0276 Vesicle coat complex C 72.0 56 0.0012 34.3 11.4 103 254-374 646-748 (794)
348 PF04910 Tcf25: Transcriptiona 71.8 1E+02 0.0022 30.9 13.3 117 313-441 41-167 (360)
349 PRK15180 Vi polysaccharide bio 69.7 21 0.00046 36.0 7.8 119 290-411 302-423 (831)
350 KOG4642 Chaperone-dependent E3 69.5 18 0.00038 33.2 6.6 81 361-441 24-106 (284)
351 COG4785 NlpI Lipoprotein NlpI, 68.9 92 0.002 28.3 16.5 160 174-342 99-267 (297)
352 KOG1550 Extracellular protein 68.9 1.7E+02 0.0036 31.3 23.5 274 159-442 228-538 (552)
353 PF07163 Pex26: Pex26 protein; 68.9 53 0.0012 31.0 9.6 88 180-268 89-181 (309)
354 PF13929 mRNA_stabil: mRNA sta 68.2 1.1E+02 0.0025 29.1 13.5 109 293-401 144-260 (292)
355 PF14561 TPR_20: Tetratricopep 67.6 16 0.00034 28.0 5.2 44 400-443 9-52 (90)
356 KOG0403 Neoplastic transformat 67.0 1.5E+02 0.0033 30.1 19.5 59 351-409 513-573 (645)
357 PF11768 DUF3312: Protein of u 66.9 66 0.0014 33.5 10.8 24 249-272 412-435 (545)
358 PF04190 DUF410: Protein of un 66.7 1.2E+02 0.0026 28.7 16.8 81 244-340 89-169 (260)
359 PF09986 DUF2225: Uncharacteri 65.4 40 0.00087 30.8 8.4 64 380-443 119-195 (214)
360 TIGR03504 FimV_Cterm FimV C-te 65.1 17 0.00037 23.5 4.2 25 114-138 5-29 (44)
361 COG4455 ImpE Protein of avirul 64.9 26 0.00057 31.6 6.6 63 351-413 5-69 (273)
362 PF09670 Cas_Cas02710: CRISPR- 64.8 1.1E+02 0.0024 30.8 12.1 54 286-340 140-197 (379)
363 smart00386 HAT HAT (Half-A-TPR 64.4 14 0.00031 21.1 3.7 29 393-421 1-29 (33)
364 PF10366 Vps39_1: Vacuolar sor 64.4 59 0.0013 25.9 8.1 27 279-305 41-67 (108)
365 PRK12798 chemotaxis protein; R 64.3 1.7E+02 0.0036 29.6 20.8 179 258-439 125-321 (421)
366 PF11663 Toxin_YhaV: Toxin wit 64.0 9.1 0.0002 31.5 3.4 31 86-118 108-138 (140)
367 KOG1308 Hsp70-interacting prot 63.8 5.2 0.00011 38.5 2.3 114 324-439 126-241 (377)
368 PRK10941 hypothetical protein; 63.4 53 0.0012 31.2 9.0 65 352-416 186-252 (269)
369 PF10579 Rapsyn_N: Rapsyn N-te 62.5 23 0.0005 26.2 4.9 46 289-334 18-65 (80)
370 PF13762 MNE1: Mitochondrial s 62.4 96 0.0021 26.2 10.1 77 147-224 43-129 (145)
371 PRK15180 Vi polysaccharide bio 62.3 1.2E+02 0.0026 31.0 11.3 127 324-454 301-430 (831)
372 KOG0545 Aryl-hydrocarbon recep 61.9 52 0.0011 30.4 8.0 59 385-443 236-294 (329)
373 PF08311 Mad3_BUB1_I: Mad3/BUB 61.3 61 0.0013 26.6 8.0 72 364-438 50-124 (126)
374 KOG4234 TPR repeat-containing 60.8 1.1E+02 0.0023 27.5 9.5 58 355-412 142-201 (271)
375 PF09477 Type_III_YscG: Bacter 60.7 83 0.0018 24.9 11.0 88 224-316 20-107 (116)
376 KOG2422 Uncharacterized conser 60.6 1.1E+02 0.0024 32.0 11.0 62 387-448 350-414 (665)
377 PRK13800 putative oxidoreducta 60.3 3.1E+02 0.0068 31.5 28.0 259 105-387 632-892 (897)
378 PF07163 Pex26: Pex26 protein; 59.9 1E+02 0.0022 29.2 9.7 87 284-372 90-183 (309)
379 KOG4507 Uncharacterized conser 59.8 26 0.00056 36.5 6.4 68 353-420 648-717 (886)
380 PRK13342 recombination factor 59.6 2.1E+02 0.0046 29.3 14.2 43 176-219 229-274 (413)
381 KOG0376 Serine-threonine phosp 59.5 17 0.00038 36.7 5.2 82 359-440 16-99 (476)
382 cd08819 CARD_MDA5_2 Caspase ac 59.1 67 0.0014 24.4 6.9 66 127-194 21-86 (88)
383 PF10345 Cohesin_load: Cohesin 58.8 2.7E+02 0.0058 30.2 26.3 187 107-304 29-252 (608)
384 PF14863 Alkyl_sulf_dimr: Alky 58.0 57 0.0012 27.5 7.3 64 362-428 56-119 (141)
385 PF04190 DUF410: Protein of un 57.9 1.7E+02 0.0037 27.7 14.7 81 346-442 89-170 (260)
386 PF08424 NRDE-2: NRDE-2, neces 56.6 2E+02 0.0044 28.1 14.2 81 71-153 17-109 (321)
387 TIGR03504 FimV_Cterm FimV C-te 56.4 21 0.00046 23.0 3.5 23 180-202 5-27 (44)
388 KOG2396 HAT (Half-A-TPR) repea 56.2 2.5E+02 0.0055 29.1 31.4 91 350-440 463-557 (568)
389 PF14561 TPR_20: Tetratricopep 54.5 95 0.0021 23.7 7.8 62 378-439 21-85 (90)
390 COG5108 RPO41 Mitochondrial DN 54.4 57 0.0012 34.6 7.9 47 282-328 33-81 (1117)
391 KOG2063 Vacuolar assembly/sort 53.4 3.8E+02 0.0082 30.3 16.9 208 177-423 507-742 (877)
392 KOG3364 Membrane protein invol 53.3 1.3E+02 0.0029 25.0 8.9 71 344-414 29-106 (149)
393 PF11846 DUF3366: Domain of un 53.2 51 0.0011 29.4 6.9 37 374-410 139-175 (193)
394 PF07720 TPR_3: Tetratricopept 52.6 52 0.0011 20.1 4.7 29 382-410 4-34 (36)
395 COG3947 Response regulator con 51.9 2.2E+02 0.0049 27.2 14.1 44 318-362 285-328 (361)
396 PF06552 TOM20_plant: Plant sp 51.8 88 0.0019 27.5 7.5 44 395-445 96-139 (186)
397 COG4455 ImpE Protein of avirul 51.5 1.9E+02 0.0042 26.4 12.5 73 281-355 5-80 (273)
398 PF07575 Nucleopor_Nup85: Nup8 51.4 1.6E+02 0.0035 31.6 11.4 90 176-270 374-463 (566)
399 smart00777 Mad3_BUB1_I Mad3/BU 51.0 1.3E+02 0.0028 24.8 8.1 68 364-437 50-123 (125)
400 COG1747 Uncharacterized N-term 50.9 3.1E+02 0.0067 28.6 24.4 161 173-341 65-234 (711)
401 PF10366 Vps39_1: Vacuolar sor 50.7 1.2E+02 0.0026 24.1 7.8 27 176-202 41-67 (108)
402 PF12862 Apc5: Anaphase-promot 50.6 51 0.0011 25.4 5.6 52 390-441 9-69 (94)
403 KOG4279 Serine/threonine prote 50.6 2.6E+02 0.0057 30.5 11.9 27 386-412 373-399 (1226)
404 KOG4077 Cytochrome c oxidase, 50.6 91 0.002 25.5 6.8 48 370-417 75-122 (149)
405 PF10579 Rapsyn_N: Rapsyn N-te 50.2 37 0.00081 25.1 4.3 45 391-435 18-65 (80)
406 KOG0686 COP9 signalosome, subu 49.9 2.9E+02 0.0062 27.9 13.9 155 247-406 152-331 (466)
407 PF13762 MNE1: Mitochondrial s 49.8 1.6E+02 0.0035 24.9 10.3 77 249-325 43-128 (145)
408 KOG3824 Huntingtin interacting 49.4 32 0.00069 32.7 4.8 48 390-437 127-174 (472)
409 PRK11619 lytic murein transgly 49.2 3.9E+02 0.0085 29.2 36.4 93 355-447 415-510 (644)
410 KOG1258 mRNA processing protei 48.9 3.5E+02 0.0077 28.6 27.6 363 18-393 60-489 (577)
411 PF04090 RNA_pol_I_TF: RNA pol 48.5 1.3E+02 0.0028 27.1 8.3 62 380-441 42-104 (199)
412 COG2909 MalT ATP-dependent tra 48.2 4.4E+02 0.0095 29.5 26.5 87 184-271 425-523 (894)
413 KOG4507 Uncharacterized conser 47.5 1.4E+02 0.003 31.5 9.2 133 308-444 567-707 (886)
414 KOG4077 Cytochrome c oxidase, 47.4 1.4E+02 0.0029 24.6 7.3 59 91-150 67-125 (149)
415 PHA02875 ankyrin repeat protei 47.0 2.1E+02 0.0046 29.1 11.2 71 95-169 17-91 (413)
416 PF11846 DUF3366: Domain of un 46.8 60 0.0013 29.0 6.3 30 344-373 141-170 (193)
417 COG2976 Uncharacterized protei 46.6 2.2E+02 0.0047 25.5 15.4 87 116-204 97-189 (207)
418 cd08819 CARD_MDA5_2 Caspase ac 46.3 80 0.0017 23.9 5.6 64 22-92 21-85 (88)
419 COG4976 Predicted methyltransf 46.2 40 0.00086 30.8 4.7 57 356-412 4-62 (287)
420 PF12862 Apc5: Anaphase-promot 45.6 83 0.0018 24.2 6.1 26 384-409 46-71 (94)
421 PF15469 Sec5: Exocyst complex 44.6 2.2E+02 0.0048 25.1 11.1 85 317-417 91-177 (182)
422 COG4976 Predicted methyltransf 44.1 47 0.001 30.3 4.9 57 389-445 5-61 (287)
423 TIGR02270 conserved hypothetic 44.0 3.7E+02 0.008 27.5 26.1 121 243-374 159-279 (410)
424 KOG0292 Vesicle coat complex C 43.6 37 0.0008 37.2 4.8 96 290-408 606-701 (1202)
425 PF04090 RNA_pol_I_TF: RNA pol 42.8 2.5E+02 0.0054 25.3 9.2 61 278-339 42-103 (199)
426 PF11838 ERAP1_C: ERAP1-like C 42.3 3.3E+02 0.0071 26.4 16.5 80 226-305 146-229 (324)
427 cd00280 TRFH Telomeric Repeat 42.1 1.3E+02 0.0029 26.5 7.1 30 385-415 117-146 (200)
428 PRK10564 maltose regulon perip 41.8 50 0.0011 31.6 5.0 39 176-215 259-297 (303)
429 PF11663 Toxin_YhaV: Toxin wit 41.4 31 0.00067 28.5 3.1 32 289-322 107-138 (140)
430 PF14669 Asp_Glu_race_2: Putat 41.3 2.6E+02 0.0057 25.0 12.0 58 316-373 136-207 (233)
431 KOG0991 Replication factor C, 41.3 2.9E+02 0.0064 25.6 11.3 143 150-318 137-279 (333)
432 KOG3807 Predicted membrane pro 40.5 3.6E+02 0.0078 26.3 10.3 113 283-414 281-397 (556)
433 KOG2659 LisH motif-containing 40.1 2.6E+02 0.0057 25.6 9.0 15 358-372 114-128 (228)
434 PF04910 Tcf25: Transcriptiona 39.9 4E+02 0.0086 26.7 15.2 89 320-410 111-224 (360)
435 COG0735 Fur Fe2+/Zn2+ uptake r 39.7 1.7E+02 0.0036 24.8 7.5 45 77-121 24-68 (145)
436 PF11525 CopK: Copper resistan 39.4 13 0.00029 26.3 0.6 21 558-578 8-28 (73)
437 PF06957 COPI_C: Coatomer (COP 38.7 78 0.0017 32.1 6.1 39 374-412 293-333 (422)
438 KOG0292 Vesicle coat complex C 38.7 4.2E+02 0.0091 29.7 11.5 133 253-409 651-783 (1202)
439 PF09670 Cas_Cas02710: CRISPR- 38.1 4.4E+02 0.0095 26.6 12.2 55 82-137 140-198 (379)
440 PRK10564 maltose regulon perip 36.8 66 0.0014 30.8 5.0 45 275-319 254-299 (303)
441 cd08326 CARD_CASP9 Caspase act 36.7 1.3E+02 0.0028 22.7 5.6 62 22-92 18-80 (84)
442 PRK11639 zinc uptake transcrip 36.5 1.7E+02 0.0037 25.5 7.3 45 78-122 30-74 (169)
443 PF11817 Foie-gras_1: Foie gra 36.0 1.9E+02 0.004 27.1 8.0 21 180-200 184-204 (247)
444 cd08332 CARD_CASP2 Caspase act 35.9 1.1E+02 0.0023 23.5 5.2 58 22-88 22-80 (90)
445 PF11838 ERAP1_C: ERAP1-like C 35.5 4.2E+02 0.0091 25.7 20.8 82 328-409 146-231 (324)
446 PF13934 ELYS: Nuclear pore co 35.2 3.6E+02 0.0079 24.8 15.9 96 289-392 90-185 (226)
447 KOG1464 COP9 signalosome, subu 34.7 4E+02 0.0087 25.2 17.9 217 179-402 70-326 (440)
448 KOG0687 26S proteasome regulat 34.7 4.5E+02 0.0097 25.7 13.3 94 245-340 104-209 (393)
449 COG5159 RPN6 26S proteasome re 34.5 4.2E+02 0.0091 25.3 14.6 160 283-442 9-194 (421)
450 TIGR02710 CRISPR-associated pr 34.4 5E+02 0.011 26.2 11.4 28 285-312 138-165 (380)
451 PF11848 DUF3368: Domain of un 34.2 1.4E+02 0.003 19.6 5.2 32 185-217 13-44 (48)
452 PF14689 SPOB_a: Sensor_kinase 33.5 83 0.0018 22.0 3.9 19 181-199 30-48 (62)
453 KOG0551 Hsp90 co-chaperone CNS 33.4 1.2E+02 0.0026 29.6 6.0 84 355-438 89-178 (390)
454 PF03745 DUF309: Domain of unk 33.2 1.4E+02 0.003 21.0 5.0 34 85-118 11-44 (62)
455 PF08311 Mad3_BUB1_I: Mad3/BUB 33.2 2.7E+02 0.0059 22.8 9.0 43 192-234 81-123 (126)
456 KOG3807 Predicted membrane pro 32.9 2.3E+02 0.0051 27.5 7.8 146 78-240 189-341 (556)
457 PHA02875 ankyrin repeat protei 32.8 5.4E+02 0.012 26.1 13.4 13 56-68 13-25 (413)
458 KOG2300 Uncharacterized conser 32.7 5.9E+02 0.013 26.5 29.6 152 285-437 331-509 (629)
459 PF12926 MOZART2: Mitotic-spin 32.6 2.2E+02 0.0048 21.6 7.3 41 129-169 29-69 (88)
460 PF14689 SPOB_a: Sensor_kinase 31.9 1.2E+02 0.0026 21.2 4.6 22 318-339 29-50 (62)
461 COG2912 Uncharacterized conser 31.7 1.7E+02 0.0037 27.6 6.7 59 384-442 186-244 (269)
462 PHA02537 M terminase endonucle 31.2 1.6E+02 0.0035 27.2 6.3 20 392-411 191-210 (230)
463 PF04034 DUF367: Domain of unk 31.1 2.8E+02 0.006 22.8 6.9 57 348-404 67-124 (127)
464 cd08326 CARD_CASP9 Caspase act 30.8 2.2E+02 0.0047 21.5 6.0 61 129-193 20-80 (84)
465 PF13929 mRNA_stabil: mRNA sta 30.0 5.1E+02 0.011 24.9 19.9 111 190-301 144-262 (292)
466 KOG3677 RNA polymerase I-assoc 29.9 4.5E+02 0.0097 26.6 9.3 61 211-271 236-298 (525)
467 COG5191 Uncharacterized conser 29.4 94 0.002 29.8 4.6 29 389-417 152-180 (435)
468 COG0735 Fur Fe2+/Zn2+ uptake r 29.3 3E+02 0.0065 23.3 7.4 37 223-259 33-69 (145)
469 KOG1464 COP9 signalosome, subu 29.1 5E+02 0.011 24.6 17.0 186 186-372 39-257 (440)
470 KOG1498 26S proteasome regulat 29.1 6.1E+02 0.013 25.5 12.8 98 352-453 136-252 (439)
471 PF11817 Foie-gras_1: Foie gra 28.9 3.7E+02 0.008 25.1 8.7 54 282-335 183-241 (247)
472 PRK13341 recombination factor 28.4 8.6E+02 0.019 27.1 17.2 38 289-326 270-307 (725)
473 COG5108 RPO41 Mitochondrial DN 28.3 3.4E+02 0.0074 29.2 8.7 74 215-288 33-114 (1117)
474 PF13934 ELYS: Nuclear pore co 28.3 4.7E+02 0.01 24.0 16.2 77 258-339 91-167 (226)
475 PF08967 DUF1884: Domain of un 28.2 65 0.0014 23.9 2.6 28 470-497 5-32 (85)
476 cd07153 Fur_like Ferric uptake 28.1 1.6E+02 0.0034 23.5 5.4 48 78-125 5-52 (116)
477 PRK11639 zinc uptake transcrip 27.9 2.5E+02 0.0054 24.5 6.9 60 304-364 18-77 (169)
478 KOG0686 COP9 signalosome, subu 27.6 6.6E+02 0.014 25.5 13.6 59 144-202 151-215 (466)
479 KOG1524 WD40 repeat-containing 27.0 3.1E+02 0.0067 28.6 7.9 88 347-437 573-668 (737)
480 KOG4567 GTPase-activating prot 27.0 5.5E+02 0.012 24.9 9.0 44 297-340 263-306 (370)
481 TIGR02270 conserved hypothetic 26.8 7E+02 0.015 25.5 25.6 236 78-339 43-279 (410)
482 PF10255 Paf67: RNA polymerase 26.7 3.5E+02 0.0076 27.5 8.4 54 147-200 126-190 (404)
483 COG0790 FOG: TPR repeat, SEL1 26.5 5.6E+02 0.012 24.3 19.5 32 393-427 205-236 (292)
484 PHA03100 ankyrin repeat protei 26.5 7.4E+02 0.016 25.7 13.3 13 432-444 367-379 (480)
485 PF11768 DUF3312: Protein of u 26.3 8E+02 0.017 26.0 11.5 22 179-200 413-434 (545)
486 COG2178 Predicted RNA-binding 26.2 4.8E+02 0.01 23.4 9.1 51 255-305 39-97 (204)
487 PF09454 Vps23_core: Vps23 cor 25.8 1.4E+02 0.0031 21.2 4.0 48 172-221 6-53 (65)
488 KOG4814 Uncharacterized conser 25.6 3.7E+02 0.0081 28.9 8.3 83 359-441 366-456 (872)
489 PF10475 DUF2450: Protein of u 25.5 3.4E+02 0.0074 26.1 8.0 54 147-202 102-155 (291)
490 KOG1498 26S proteasome regulat 25.3 7.1E+02 0.015 25.1 15.5 134 121-283 25-165 (439)
491 PF12968 DUF3856: Domain of Un 25.2 3.8E+02 0.0083 21.9 8.8 61 378-438 54-125 (144)
492 TIGR01503 MthylAspMut_E methyl 25.1 7.3E+02 0.016 25.6 10.1 46 189-238 69-114 (480)
493 KOG2908 26S proteasome regulat 24.6 6.3E+02 0.014 24.9 9.1 30 283-312 121-155 (380)
494 PF10475 DUF2450: Protein of u 24.4 3.8E+02 0.0083 25.8 8.1 52 251-305 104-155 (291)
495 COG5187 RPN7 26S proteasome re 24.4 4.7E+02 0.01 25.1 8.0 94 345-440 113-219 (412)
496 PRK06645 DNA polymerase III su 24.2 7.9E+02 0.017 26.0 10.8 91 202-313 202-293 (507)
497 PF11123 DNA_Packaging_2: DNA 24.1 1.6E+02 0.0034 21.5 3.8 31 57-87 12-45 (82)
498 cd00280 TRFH Telomeric Repeat 24.0 3.6E+02 0.0079 23.9 6.8 32 354-385 118-149 (200)
499 cd04440 DEP_2_P-Rex DEP (Dishe 23.4 65 0.0014 24.8 2.1 35 540-575 51-85 (93)
500 PF02184 HAT: HAT (Half-A-TPR) 23.4 1.8E+02 0.0038 17.4 3.6 24 394-418 2-25 (32)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-118 Score=969.99 Aligned_cols=572 Identities=34% Similarity=0.615 Sum_probs=563.7
Q ss_pred cchHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHH
Q 007998 2 ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAVL 80 (582)
Q Consensus 2 ~~~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li 80 (582)
.+|.++|++|+..+ +++.|+++|..+++.|+.+| +.++ |+|+++|++ |++++|+++|++|+.||+++||++|
T Consensus 124 ~t~~~ll~a~~~~~--~~~~a~~l~~~m~~~g~~~~--~~~~---n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li 196 (697)
T PLN03081 124 STYDALVEACIALK--SIRCVKAVYWHVESSGFEPD--QYMM---NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTII 196 (697)
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCCcc--hHHH---HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHH
Confidence 36899999999954 69999999999999999999 8886 899999999 9999999999999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 007998 81 RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160 (582)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 160 (582)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+.|+.||..++|+||++|+++|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC
Q 007998 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240 (582)
Q Consensus 161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 240 (582)
+|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+ .||..||++++.+|++.|++++|.++|..|.+.|
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV-SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320 (582)
Q Consensus 241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (582)
+.||..++++|+++|+++|++++|.++|++|. +||+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007998 321 ACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 399 (582)
+|++.|++++|.++|+.|.+ +|+.|+..+|++|+++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|.
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 007998 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479 (582)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 479 (582)
.+++++.+++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+||+++++.+|.|++|+.+||+.+++++.+
T Consensus 515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l 594 (697)
T PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKL 594 (697)
T ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcccCCccccccCChhhhhhhcccccHHHHHHHHhhcCCCCCcEEEecccccCCCchhhHHHHhhhhCce
Q 007998 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559 (582)
Q Consensus 480 ~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~s~~~~~~ 559 (582)
+++..+|++.||+||+.+++|++++++|+..+.+||||||++|||+++|||+||||+||||+|+|||+|+|+||++.+|+
T Consensus 595 ~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~ 674 (697)
T PLN03081 595 DELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKRE 674 (697)
T ss_pred HHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccccccCCccCCCCCC
Q 007998 560 IIVRDRVRFHRFKDGACSCKDYW 582 (582)
Q Consensus 560 ~~~~~~~~~h~f~~g~csc~~~~ 582 (582)
|||||.+|||||+||+|||+|||
T Consensus 675 i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 675 IVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.2e-113 Score=948.55 Aligned_cols=567 Identities=35% Similarity=0.657 Sum_probs=555.4
Q ss_pred cchHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHH
Q 007998 2 ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAVL 80 (582)
Q Consensus 2 ~~~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li 80 (582)
.+|.++|++|+..+ +++.|+++|..+.+.|+.+| ..++ |+|+.+|++ |++++|.++|++|+.||+++||++|
T Consensus 289 ~ty~~ll~a~~~~g--~~~~a~~l~~~~~~~g~~~d--~~~~---n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 289 MTITSVISACELLG--DERLGREMHGYVVKTGFAVD--VSVC---NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred hHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCccc--hHHH---HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 37899999999954 69999999999999999999 8886 899999999 9999999999999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 007998 81 RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160 (582)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 160 (582)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC
Q 007998 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240 (582)
Q Consensus 161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 240 (582)
+|.++|++|.++|+++||+||.+|.++|+.++|+++|++|.. ++ +||..||++++.+|++.|+++.+.++|..+.+.|
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~-~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL-KPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC-CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999986 56 9999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320 (582)
Q Consensus 241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (582)
+.+|..++|+|+++|+++|++++|+++|+.+ .||+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 9999999999999999999999999999998 79999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007998 321 ACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 399 (582)
+|++.|++++|.++|+.|.+ +|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 99999999999999999995 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 007998 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479 (582)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 479 (582)
.+.+++++++|+++..|+.|+++|+..|+|++|.++++.|+++|++|.||+|||++++++|.|.+||.+||+.++++..|
T Consensus 678 ~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l 757 (857)
T PLN03077 678 LAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL 757 (857)
T ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcccCCccccccCChhhhhhhcccccHHHHHHHHhhcCCCCCcEEEecccccCCCchhhHHHHhhhhCce
Q 007998 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE 559 (582)
Q Consensus 480 ~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~s~~~~~~ 559 (582)
+++..+|++.||+||+..++ +.++++|+..+++||||||++|||++||||+||||+||||+|+|||+++|+||++.+|+
T Consensus 758 ~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~ 836 (857)
T PLN03077 758 EGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRRE 836 (857)
T ss_pred HHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeE
Confidence 99999999999999999888 55788999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccccccCCccCCCC
Q 007998 560 IIVRDRVRFHRFKDGACSCKD 580 (582)
Q Consensus 560 ~~~~~~~~~h~f~~g~csc~~ 580 (582)
|||||.+|||||++|+|||+|
T Consensus 837 i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 837 ISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EEEecCCcceeCCCCcccCCC
Confidence 999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-70 Score=610.37 Aligned_cols=533 Identities=21% Similarity=0.328 Sum_probs=480.5
Q ss_pred chHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHHH
Q 007998 3 NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAVLR 81 (582)
Q Consensus 3 ~~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~ 81 (582)
+|..++++|+.. +++..|+++|..+++.|..++ +.+. |+|+++|++ |+++.|+++|++|++||+++||++|.
T Consensus 88 ~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~--~~~~---n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~ 160 (857)
T PLN03077 88 AYVALFRLCEWK--RAVEEGSRVCSRALSSHPSLG--VRLG---NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160 (857)
T ss_pred HHHHHHHHHhhC--CCHHHHHHHHHHHHHcCCCCC--chHH---HHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHH
Confidence 578899999984 459999999999999999888 8876 899999999 99999999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 007998 82 GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161 (582)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 161 (582)
+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..+.+++..+.+.|+.||..++|+||++|+++|++++
T Consensus 161 ~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCC
Q 007998 162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241 (582)
Q Consensus 162 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 241 (582)
|.++|++|+.+|+++||+||.+|++.|++++|+++|++|...|+ .||..||+.++.+|++.|+.+.|.+++..+.+.|+
T Consensus 241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~-~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV-DPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007998 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321 (582)
Q Consensus 242 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 321 (582)
.||..+||+|+++|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007998 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIA 401 (582)
Q Consensus 322 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 401 (582)
|++.|+++.|.++++.|.+.|+.|+..+|++|+++|+++|++++|.++|++|+ +||..+|++++.+|.+.|+.++|..+
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997 57999999999999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC-----------------------------cccE
Q 007998 402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP-----------------------------GFSY 452 (582)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----------------------------~~s~ 452 (582)
|++|.+.-++|..+|..++.+|++.|..+.+.+++..|.+.|+.++. ..+|
T Consensus 478 f~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~ 557 (857)
T PLN03077 478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW 557 (857)
T ss_pred HHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhH
Confidence 99998754556677777666666666665555555555555544322 1245
Q ss_pred EEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhhhhhc---ccccHHHHHHHHhhcCCC
Q 007998 453 IEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL---CYHSEKLAVAFGLISTSE 529 (582)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~e~la~~~~~~~~~~ 529 (582)
. .++.|+..|++.+++.. ++.+|.+.|+.||..++..-+..+.+.+.+ ....+.+.-.||+.++..
T Consensus 558 n-------~lI~~~~~~G~~~~A~~----lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 558 N-------ILLTGYVAHGKGSMAVE----LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred H-------HHHHHHHHcCCHHHHHH----HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 4 45677888999988876 666789999999998876655555444332 334455555678777765
Q ss_pred CCcEEEecccccCCCchhhHHHHhhhhC
Q 007998 530 ATSIQVFKNLRICRDCHDVIKLISKVYN 557 (582)
Q Consensus 530 ~~~~~~~~~l~~~~~~h~~~~~~s~~~~ 557 (582)
++. ++++.+.++|+..+|.++|.+|+.
T Consensus 627 ~y~-~lv~~l~r~G~~~eA~~~~~~m~~ 653 (857)
T PLN03077 627 HYA-CVVDLLGRAGKLTEAYNFINKMPI 653 (857)
T ss_pred HHH-HHHHHHHhCCCHHHHHHHHHHCCC
Confidence 555 799999999999999999999863
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-60 Score=520.00 Aligned_cols=523 Identities=16% Similarity=0.219 Sum_probs=360.8
Q ss_pred hHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHHHH
Q 007998 4 LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAVLRG 82 (582)
Q Consensus 4 ~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~ 82 (582)
|..++..|.. .++++.|.+++..|.+.|+.+.. .... +.++..|.+ |.+++|.++|+.|+.||..+||.+|.+
T Consensus 373 ~~~~y~~l~r--~G~l~eAl~Lfd~M~~~gvv~~~-~v~~---~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 373 YIDAYNRLLR--DGRIKDCIDLLEDMEKRGLLDMD-KIYH---AKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred HHHHHHHHHH--CcCHHHHHHHHHHHHhCCCCCch-HHHH---HHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4455555555 33577777777777777754320 2232 567777777 777777777777777777777777777
Q ss_pred HHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 007998 83 LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA 162 (582)
Q Consensus 83 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 162 (582)
|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||++|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhcC----CCChhHHHHHHHHHHhCCChhHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHH
Q 007998 163 KKVFDEMG----VRDIASWNALIAGLAQGNLASEAVDLFKRMKM--EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236 (582)
Q Consensus 163 ~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 236 (582)
.++|++|. .||..+||.||.+|++.|++++|.++|++|.. .|+ .||..||++++.+|++.|++++|.++|+.|
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi-~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI-DPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777774 46777777777777777777777777777765 456 777777777777777777777777777777
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH
Q 007998 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK---CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313 (582)
Q Consensus 237 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 313 (582)
.+.|+.|+..+|+++|.+|++.|++++|.++|++|. ..||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 777777777777777777777777777777777775 45777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHH
Q 007998 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV---SMGTDMVLWQTLLGACQ 390 (582)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~ 390 (582)
+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++| ++.||..+|++++.+|.
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777776 56777777777777777
Q ss_pred hcCChHHHHHHHHHHHHcCC-CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC-ccCCcccEEEECCEEEEEEeCCCC
Q 007998 391 LYGDVEMAEIASRKLVEMGS-NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV-KKVPGFSYIEVGGVIHKFFTSDKS 468 (582)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~ 468 (582)
+.|++++|.+++++|.+.+. ++..+|..|+.+|. ++++++..+.+.+..-+. ......+|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g~~~~~n~w---------------- 827 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSGRPQIENKW---------------- 827 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhccccccccch----------------
Confidence 77777777777777777652 35566776665543 234444444333221110 00000111
Q ss_pred CcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhhhhhcccccHHHHHHHHhhcCCCCCc--EEEecccccCCCch
Q 007998 469 HVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS--IQVFKNLRICRDCH 546 (582)
Q Consensus 469 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~--~~~~~~l~~~~~~h 546 (582)
..++. .++++|.+.|+.||..++...+ .+-....-......+--.+++.+.+++.. ..+++.+ |..-+
T Consensus 828 ---~~~Al----~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~ 897 (1060)
T PLN03218 828 ---TSWAL----MVYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDP 897 (1060)
T ss_pred ---HHHHH----HHHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChH
Confidence 23344 3778999999999987664433 22110000112234444456666655532 2345543 11125
Q ss_pred hhHHHHhhhhCceEE
Q 007998 547 DVIKLISKVYNREII 561 (582)
Q Consensus 547 ~~~~~~s~~~~~~~~ 561 (582)
+|..++..|..+.|+
T Consensus 898 ~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 898 RAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHHHHHHcCCC
Confidence 799999888877553
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-60 Score=517.29 Aligned_cols=438 Identities=19% Similarity=0.267 Sum_probs=406.8
Q ss_pred cchHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC----CCChhHH
Q 007998 2 ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN----APSTNDF 76 (582)
Q Consensus 2 ~~~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~----~~~~~~~ 76 (582)
.+|..+|++|+. .++++.|.++|..|.+.|+.+| ..++ |+||.+|++ |++++|.++|++|. .||.++|
T Consensus 438 ~Tyn~LL~a~~k--~g~~e~A~~lf~~M~~~Gl~pD--~~ty---nsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTy 510 (1060)
T PLN03218 438 STFNMLMSVCAS--SQDIDGALRVLRLVQEAGLKAD--CKLY---TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510 (1060)
T ss_pred HHHHHHHHHHHh--CcCHHHHHHHHHHHHHcCCCCC--HHHH---HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 368899999998 4569999999999999999999 8886 899999999 99999999999997 6899999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCchHHHHHHHHHHH
Q 007998 77 NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR--HGFLADALLGTTLLDVYA 154 (582)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~ 154 (582)
|+||.+|++.|++++|+++|++|...|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|+
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 678999999999999999
Q ss_pred hcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHH
Q 007998 155 KVGEIVSAKKVFDEMGV----RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230 (582)
Q Consensus 155 ~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~ 230 (582)
++|++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+ .||..||+.++.+|++.|++++|.
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999964 5779999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC
Q 007998 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK---CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307 (582)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 307 (582)
++|++|.+.|+.||..+|++||.+|+++|++++|.++|++|. ..||..+||+||.+|++.|++++|+++|++|.+.|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999995 47999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhh----cC-------------------CHH
Q 007998 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR----AG-------------------RLQ 364 (582)
Q Consensus 308 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g-------------------~~~ 364 (582)
+.||..||+.++.+|++.|++++|.++|++|.+.|+.||..+|++|+.++.+ ++ ..+
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 9999999999999999999999999999999999999999999999976432 22 246
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 365 EACDIVKSV---SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG-SNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 365 ~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
+|..+|++| ++.||..+|+.++.++...+..+.+..+++.+.... +.+..+|..|++++.+. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 799999998 889999999999987778888888888888765433 55778999999987322 368999999999
Q ss_pred hCCCccCCc
Q 007998 441 NRDVKKVPG 449 (582)
Q Consensus 441 ~~~~~~~~~ 449 (582)
+.|+.|...
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 999988764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-60 Score=514.96 Aligned_cols=486 Identities=20% Similarity=0.314 Sum_probs=428.4
Q ss_pred CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHH
Q 007998 70 APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS-HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148 (582)
Q Consensus 70 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 148 (582)
.++..+|+++|.++.+.|++++|+++|++|...+ ..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHH
Q 007998 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228 (582)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~ 228 (582)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+ .||..||+.++.+|++.|..+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~-~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS-DAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCChhhHHHHHHHHhcCCcHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC
Q 007998 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308 (582)
Q Consensus 229 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 308 (582)
+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|. ++|+++||+||.+|++.|+.++|+++|++|.+.|+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007998 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388 (582)
Q Consensus 309 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~ 388 (582)
.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. +||..+|++|+.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAG 400 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 5899999999999
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHhcCCchHHHHHHHHHHh-CCCccCC-cccEEEECCEEEEEEeC
Q 007998 389 CQLYGDVEMAEIASRKLVEMG-SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN-RDVKKVP-GFSYIEVGGVIHKFFTS 465 (582)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~-~~s~~~~~~~~~~~~~~ 465 (582)
|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|..++|.++|+.|.+ .|+.|.. .++ .++.+
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~---------~li~~ 471 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA---------CMIEL 471 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH---------hHHHH
Confidence 999999999999999999876 34788999999999999999999999999985 5877654 222 23445
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhhhhhc---ccccHHHHHHHHhhcCCCCCcEEEecccccC
Q 007998 466 DKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL---CYHSEKLAVAFGLISTSEATSIQVFKNLRIC 542 (582)
Q Consensus 466 ~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~e~la~~~~~~~~~~~~~~~~~~~l~~~ 542 (582)
+...+..+++++.+ ++.++.|+..++..-+..+.+...+ ....+++ +++.+...++.+.+++-+..+
T Consensus 472 l~r~G~~~eA~~~~-------~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l---~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 472 LGREGLLDEAYAMI-------RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL---YGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHhcCCHHHHHHHH-------HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH---hCCCCCCCcchHHHHHHHHhC
Confidence 56677788887644 4568888876543222222221111 1111111 344444445566677788999
Q ss_pred CCchhhHHHHhhhhCceE-------EEecCCccccccCCccC
Q 007998 543 RDCHDVIKLISKVYNREI-------IVRDRVRFHRFKDGACS 577 (582)
Q Consensus 543 ~~~h~~~~~~s~~~~~~~-------~~~~~~~~h~f~~g~cs 577 (582)
|+..+|.+++.+|..+.+ .+.-.+..|.|..|-.+
T Consensus 542 G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 542 GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 999999999998776643 24556778999777544
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=3.1e-31 Score=213.25 Aligned_cols=106 Identities=62% Similarity=1.007 Sum_probs=96.7
Q ss_pred cccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhh--------hhhcccccHHHHH
Q 007998 449 GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK--------ENALCYHSEKLAV 520 (582)
Q Consensus 449 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la~ 520 (582)
|+||+++ |.|++|+.+||+. ++..++...||.|++..+.|+++++++ +..++.||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899877 9999999999998 355677889999999999988877765 5678999999999
Q ss_pred HHHhhcCCCCCcEEEeccc-ccCCCchhhHHHHhhhhCceEEEecCCcccccc
Q 007998 521 AFGLISTSEATSIQVFKNL-RICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572 (582)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~l-~~~~~~h~~~~~~s~~~~~~~~~~~~~~~h~f~ 572 (582)
+|||+++ |++||+ |||+|||+++|+||++++|+|+|||.+|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899998 999999999999999999999999999999996
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.3e-25 Score=254.19 Aligned_cols=413 Identities=12% Similarity=0.043 Sum_probs=294.3
Q ss_pred cChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHH
Q 007998 17 VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNA 92 (582)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 92 (582)
++.+.+..+...+.+... .+ +.+ |+.+...|.. |++++|.+.|+++. +.+...+..+...+...|++++|
T Consensus 445 ~~~~~A~~~~~~~~~~~~-~~--~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQP-DN--ASL---HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred CCHHHHHHHHHHHHHhCC-CC--cHH---HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 357777777777765432 22 333 3677777777 88888888887653 34556677777788888888888
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--
Q 007998 93 VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG-- 170 (582)
Q Consensus 93 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-- 170 (582)
.+.|+++...++ .+..++..+...+...|+.++|...++.+.+.+ +.+...+..++..|.+.|++++|..+++.+.
T Consensus 519 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 519 IQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 888888876542 355677777777777888888888888877664 3455667777788888888888888887764
Q ss_pred -CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHH
Q 007998 171 -VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249 (582)
Q Consensus 171 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (582)
..+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+.
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 2356677888888888888888888888877664 4566677777777777888888888888777654 33566777
Q ss_pred HHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 007998 250 AVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327 (582)
Q Consensus 250 ~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 327 (582)
.++..+.+.|++++|.++++.+. .+.+...+..+...+...|++++|+..|+++... .|+..++..+..++.+.|+
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCC
Confidence 77777888888888887777765 2345666777777777778888888887777764 3444666667777777777
Q ss_pred HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKL 405 (582)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 405 (582)
+++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|+++ ... ++..++..+...+...|+ ++|+..++++
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 777777777777632 345666777777777777777777777765 222 356677777777777777 6677777777
Q ss_pred HHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 406 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
++..|+++..+..++.+|...|++++|...++++.+.+.
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777777777777777777777777777776554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=2e-25 Score=252.67 Aligned_cols=412 Identities=10% Similarity=-0.027 Sum_probs=352.4
Q ss_pred cChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHH
Q 007998 17 VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNA 92 (582)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 92 (582)
++.+.+...+..+++..... +... ..++..|.+ |++++|.++++.+. +++...|+.+...+...|++++|
T Consensus 411 ~~~~~A~~~~~~a~~~~~~~---~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 411 GDPSEAIADLETAAQLDPEL---GRAD---LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred CChHHHHHHHHHHHhhCCcc---hhhH---HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHH
Confidence 35788888888887765332 2222 567788888 99999999999875 35677899999999999999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--
Q 007998 93 VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG-- 170 (582)
Q Consensus 93 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-- 170 (582)
.+.|+++.+..+ .+...+..+...+...|++++|.+.++.+++.. +.+..++..+...|.+.|+.++|...|+++.
T Consensus 485 ~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 485 REAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999987542 345567778888999999999999999999875 4477889999999999999999999999874
Q ss_pred -CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHH
Q 007998 171 -VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249 (582)
Q Consensus 171 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (582)
..+...+..++..|.+.|++++|+++++++.... +.+..+|..+..++...|++++|...++.+.+.. +.+...+.
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 639 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALL 639 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 3356788899999999999999999999998765 6788899999999999999999999999998875 34677888
Q ss_pred HHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 007998 250 AVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327 (582)
Q Consensus 250 ~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 327 (582)
.+...|.+.|++++|...|+++. .+.+..+|..++..+...|++++|..+++.+.+.. +++...+..+...+...|+
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 99999999999999999999765 24567899999999999999999999999998864 4566778888889999999
Q ss_pred HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKL 405 (582)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 405 (582)
+++|...|+.+...+ |+...+..+..+|.+.|++++|.+.++++ ... .+..++..+...|...|++++|...|+++
T Consensus 719 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 719 YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999999998843 55577778899999999999999999887 323 47888889999999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 406 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
++.+|+++..+..++.++...|+ .+|...++++.+..
T Consensus 797 ~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 797 VKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 99999999999999999999999 88999999887654
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-20 Score=184.25 Aligned_cols=377 Identities=14% Similarity=0.098 Sum_probs=240.0
Q ss_pred HHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHH-HHHHHHh
Q 007998 46 IIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF-ALKACAR 120 (582)
Q Consensus 46 ~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~ 120 (582)
|..+.+.|-. |++++|..+++.+. +..+..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+ +-...-.
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHh
Confidence 3345555544 67777776666653 23455677777777777777777777766665 3444433222 2222334
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCChhHHHHHH
Q 007998 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD---IASWNALIAGLAQGNLASEAVDLF 197 (582)
Q Consensus 121 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~ 197 (582)
.|++++|...+.++++... .=...|+.|...+-..|++..|..-|++...-| ..+|-.|...|...+.+++|+..|
T Consensus 197 ~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 5666777776666665532 123456666666777777777777776665433 346666777777777777777777
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCC
Q 007998 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRK 275 (582)
Q Consensus 198 ~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~ 275 (582)
.+..... +.....+..+...|-..|.++.|...+++.++.... -...|+.|..++...|++.+|.+.|.+.. +..
T Consensus 276 ~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 276 LRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred HHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 6666553 334556666666667777777777777776665311 25667777777777777777777776543 233
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhh
Q 007998 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSV 353 (582)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l 353 (582)
-..+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-++|++++|...|++.+. ++|+ ...|+.+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm 428 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM 428 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence 455667777777777777777777776665 45553 4566677777777777777777777665 4555 3566667
Q ss_pred hhHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchH
Q 007998 354 VDLLGRAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDD 431 (582)
Q Consensus 354 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 431 (582)
...|-..|+...|.+.+.+. .++|. ....+.|...|...|+..+|+..+++.++++|+-+.+|-.++.++--..+|.+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 77777777777777776654 55553 45666777777777777777777777777777777777776666665556555
Q ss_pred H
Q 007998 432 V 432 (582)
Q Consensus 432 a 432 (582)
-
T Consensus 509 ~ 509 (966)
T KOG4626|consen 509 Y 509 (966)
T ss_pred h
Confidence 3
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=1.6e-18 Score=198.30 Aligned_cols=386 Identities=11% Similarity=0.046 Sum_probs=281.9
Q ss_pred HhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCh-hHHH------------
Q 007998 50 YALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDA-LTCS------------ 112 (582)
Q Consensus 50 i~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~------------ 112 (582)
...+.. |++++|...|++.. +.+...+..|...+.+.|++++|+..|++..+..+.... ..+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 344445 99999999998764 347788899999999999999999999998875433211 1121
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCC
Q 007998 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNL 189 (582)
Q Consensus 113 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~ 189 (582)
.....+...|++++|++.++.+++.. +.+...+..+..+|...|++++|++.|++... .+...+..+...|. .++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 12345668899999999999999875 34566778889999999999999999988753 34566777777664 457
Q ss_pred hhHHHHHHHHHHHcCCC-------CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007998 190 ASEAVDLFKRMKMEGVF-------KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262 (582)
Q Consensus 190 ~~~A~~~~~~m~~~g~~-------~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 262 (582)
.++|+.+++.+...... ......+......+...|++++|.+.+++.++.... +...+..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 78888887765432100 001123445566777888999999999888887533 5667778888899999999
Q ss_pred HHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH---------HHHHHHHHHHcCCCHHHH
Q 007998 263 KAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV---------SYLAALCACNHAGLVDDG 331 (582)
Q Consensus 263 ~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a 331 (582)
+|...|+++. .+.+...+..+...+...++.++|+..++++......++.. .+......+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999888764 13355566666666777888888888888764432222221 123445667788888888
Q ss_pred HHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409 (582)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 409 (582)
..+++. .+.+...+..+...|.+.|++++|++.|++. ...| +...+..+...+...|++++|++.++++.+..
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 888762 2344556667888888888888888888876 4445 57788888888888888888888888888888
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 410 SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
|+++..+..++.++...|++++|.++++++....
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8888888888888888888888888888887654
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=2.2e-18 Score=197.09 Aligned_cols=410 Identities=10% Similarity=0.003 Sum_probs=320.9
Q ss_pred cChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCC--CC---hhHHHHH-----------
Q 007998 17 VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINA--PS---TNDFNAV----------- 79 (582)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~--~~---~~~~~~l----------- 79 (582)
++.+.|...+..+++.... + +.+ +..|...|.+ |++++|...|++... |+ ...|..+
T Consensus 283 g~~~~A~~~l~~aL~~~P~-~--~~a---~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPK-D--SEA---LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCC-C--HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 4578888888888875422 2 334 3678888888 999999999987642 32 2233322
Q ss_pred -HHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 007998 80 -LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158 (582)
Q Consensus 80 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 158 (582)
...+.+.|++++|+..|++..+..+ .+...+..+...+...|++++|++.++.+++.. +.+...+..+...|. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 3456789999999999999998643 355677788899999999999999999999875 335566777778775 467
Q ss_pred HHHHHHHHhhcCCCC------------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCc
Q 007998 159 IVSAKKVFDEMGVRD------------IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW 226 (582)
Q Consensus 159 ~~~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~ 226 (582)
.++|...++.+.... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 899999998875431 2245567788889999999999999999875 55677888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCC----CH---------HHHHHHHHHHHhCCCh
Q 007998 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK----SL---------VTWNTMVMAFAVHGDG 293 (582)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~ 293 (582)
++|...++++++... .+...+..+...+.+.|+.++|...++.+. .. +. ..+..+...+...|+.
T Consensus 512 ~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~-~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 512 SQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLP-RAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCC-chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999987643 355555566667888999999999999886 21 11 1123456778899999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 373 (582)
++|+.+++. .+++...+..+...+.+.|++++|...|+++.+.. +.+...+..++.+|...|++++|++.++..
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999882 23445567778889999999999999999999843 345778888999999999999999999987
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc------hhHHHHHHHHHhcCCchHHHHHHHHHH-hCCC
Q 007998 374 -SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC------GDFVLLSNLYAAYERWDDVGRVRKAMK-NRDV 444 (582)
Q Consensus 374 -~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~ 444 (582)
...| +...+..+..++...|++++|.++++++++..|+++ ..+..++.++...|++++|...++... ..++
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 3444 566778888899999999999999999999876544 356677999999999999999999875 3344
Q ss_pred c
Q 007998 445 K 445 (582)
Q Consensus 445 ~ 445 (582)
.
T Consensus 744 ~ 744 (1157)
T PRK11447 744 T 744 (1157)
T ss_pred C
Confidence 3
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.1e-18 Score=185.20 Aligned_cols=251 Identities=14% Similarity=0.026 Sum_probs=206.1
Q ss_pred CChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007998 188 NLASEAVDLFKRMKMEGVFKP-NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266 (582)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 266 (582)
+++++|++.|++....+...| +...+..+...+...|++++|...+++.++... .+...|..+...|...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHH
Confidence 678999999999987652133 456788888888999999999999999988742 246688889999999999999999
Q ss_pred HHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCC
Q 007998 267 VFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343 (582)
Q Consensus 267 ~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 343 (582)
.|++.. .+.+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++.+.|++++|...|++..+..
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 999764 2456789999999999999999999999999875 454 5677778888999999999999999998732
Q ss_pred ccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDM-V-------LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414 (582)
Q Consensus 344 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 414 (582)
+.+...+..+..+|...|++++|.+.|++. ...|+. . .++..+..+...|++++|...++++++++|++..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 335678888999999999999999999875 333321 1 1222223344569999999999999999999988
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 415 DFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 415 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
.+..++.++...|++++|.+.+++..+.
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999988654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=7.6e-20 Score=178.33 Aligned_cols=363 Identities=12% Similarity=0.095 Sum_probs=311.1
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-HHHHHHHH
Q 007998 73 TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA-LLGTTLLD 151 (582)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~ 151 (582)
..+|..+...+-..|++++|+.+++.|.+..++ ....|..+..++...|+.+.|.+.+...++.. |+. ...+.+.+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 457888999999999999999999999985322 45689999999999999999999999998874 443 34455667
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHH
Q 007998 152 VYAKVGEIVSAKKVFDEMGV--R-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228 (582)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~ 228 (582)
.....|++++|...+.+..+ | =.+.|+.|...+-.+|+...|+..|++..... +.=...|..+...|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchH
Confidence 77788999999998877653 3 24789999999999999999999999998764 2335689999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 007998 229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306 (582)
Q Consensus 229 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 306 (582)
|...+.+..... +....++..+...|...|.++-|+..|++.. ..| -...|+.|..++-..|+..+|...|.+...
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~- 348 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR- 348 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-
Confidence 999998887753 2246778888899999999999999999765 344 467999999999999999999999999987
Q ss_pred CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC-HHHH
Q 007998 307 GVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD-MVLW 382 (582)
Q Consensus 307 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 382 (582)
+.|+. ...+.|...+...|.+++|..+|....+ +.|. ....+.|...|-+.|++++|...+++. .++|+ ...+
T Consensus 349 -l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 349 -LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred -hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 45665 5788899999999999999999999887 3344 466788999999999999999999986 88886 5789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 383 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
+.+...|...|+.+.|.+.+.+++..+|.-..++..|+.+|...|+..+|.+-++...+...+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999999999999988765544
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.7e-19 Score=183.76 Aligned_cols=292 Identities=12% Similarity=0.050 Sum_probs=176.3
Q ss_pred HHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHhccCCc
Q 007998 153 YAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN---EVTVLGALAACGHLGAW 226 (582)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd---~~t~~~ll~a~~~~~~~ 226 (582)
+...|++++|...|.++... +..+|..+...+.+.|++++|+.+++.+...+. .++ ..++..+...+.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD-LTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHCCCH
Confidence 34445555555555544321 233455555555555555555555555544321 111 12344445555555555
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC------HHHHHHHHHHHHhCCChhHHHHH
Q 007998 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS------LVTWNTMVMAFAVHGDGPRALEL 299 (582)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~~~ 299 (582)
++|..++.++.+.. +.+..+++.++..|.+.|++++|.+.|+.+. ..|+ ...|..+...+...|++++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555555432 2234455555555666666666665555543 0111 11344555666667777777777
Q ss_pred HHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC
Q 007998 300 FEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT 377 (582)
Q Consensus 300 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 377 (582)
|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+.+.......+..++.+|.+.|++++|.+.++++ ...|
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7777653 233 34556666677777777777777777776332222355667777788888888888887776 4456
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCc
Q 007998 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA---YERWDDVGRVRKAMKNRDVKKVPG 449 (582)
Q Consensus 378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 449 (582)
+...+..+...+.+.|++++|..+++++++..|++. .+..+...+.. .|+.+++..++++|.++++.+.|.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 666667788888888888888888888888888664 45555555443 458888999999998888888885
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=7.1e-19 Score=179.24 Aligned_cols=293 Identities=14% Similarity=0.103 Sum_probs=188.3
Q ss_pred HHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 007998 83 LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA 162 (582)
Q Consensus 83 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 162 (582)
+...|++++|+..|.++.+.++ .+..++..+...+...|++++|..+++.+++.+..++..
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------------------ 105 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ------------------ 105 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH------------------
Confidence 3445555566666666555421 123345555555555555555555555555432111100
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC
Q 007998 163 KKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242 (582)
Q Consensus 163 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 242 (582)
....++.+...|.+.|++++|+.+|.++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..
T Consensus 106 ----------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 106 ----------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred ----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence 01234444455555555555555555554432 334445555555555555555555555555443322
Q ss_pred Cc----hhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007998 243 MN----VVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316 (582)
Q Consensus 243 ~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 316 (582)
+. ...+..+...|.+.|++++|.+.|+++. .+.+...+..+...|.+.|++++|+++|+++.+.+..+...++.
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP 253 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH
Confidence 21 1234566777788888888888888764 13345677888888999999999999999988753222235678
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---c
Q 007998 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQL---Y 392 (582)
Q Consensus 317 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~---~ 392 (582)
.+..+|...|++++|...++++.+. .|+...+..++..|.+.|++++|.++++++ ...|+...+..++..+.. .
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCC
Confidence 8888999999999999999998874 366666688899999999999999999876 667898899988877664 5
Q ss_pred CChHHHHHHHHHHHHc
Q 007998 393 GDVEMAEIASRKLVEM 408 (582)
Q Consensus 393 g~~~~a~~~~~~~~~~ 408 (582)
|+.+++..+++++++.
T Consensus 332 g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 332 GRAKESLLLLRDLVGE 347 (389)
T ss_pred ccchhHHHHHHHHHHH
Confidence 6888999999888864
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.4e-17 Score=178.41 Aligned_cols=350 Identities=9% Similarity=-0.013 Sum_probs=272.5
Q ss_pred CCHHHHHHHHhcCCCC------ChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007998 56 NELAYAHALFRQINAP------STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ 129 (582)
Q Consensus 56 g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 129 (582)
.+++.---.|...++. +..-...++..+.+.|++.+|+.+++..+...+.+ ...+..++.+....|+++.|.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~ 97 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQ 97 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHH
Confidence 3444444455554421 22233456677888999999999999998875443 3445555566778999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 007998 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206 (582)
Q Consensus 130 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 206 (582)
.++.+++.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++.+....
T Consensus 98 ~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-- 174 (656)
T PRK15174 98 VVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-- 174 (656)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--
Confidence 999999885 34667788899999999999999999998753 367789999999999999999999999887764
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHH
Q 007998 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMV 284 (582)
Q Consensus 207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li 284 (582)
+.+...+..+ ..+...|++++|...++.+++....++......+...+.+.|++++|...|++.. .+.+...+..+.
T Consensus 175 P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 175 PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3344444333 3477889999999999998877544455555666788999999999999998765 245677888899
Q ss_pred HHHHhCCChhH----HHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhh
Q 007998 285 MAFAVHGDGPR----ALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359 (582)
Q Consensus 285 ~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 359 (582)
..|...|++++ |+..|++..+. .|+ ...+..+...+...|++++|...++++.+.. +.+...+..+..+|.+
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 99999999986 89999999874 455 4578888899999999999999999999843 2245566778899999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998 360 AGRLQEACDIVKSV-SMGTDMVL-WQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413 (582)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 413 (582)
.|++++|.+.++++ ...|+... +..+..++...|+.++|...|+++++..|++.
T Consensus 331 ~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 331 VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999887 44565444 34456778999999999999999999998753
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=5.9e-17 Score=174.12 Aligned_cols=360 Identities=9% Similarity=-0.037 Sum_probs=278.1
Q ss_pred HHHHhcCCC-CCHHHHHHHHhcCC--CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 007998 47 IEFYALSPL-NELAYAHALFRQIN--APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123 (582)
Q Consensus 47 ~~li~~y~~-g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 123 (582)
..+.+.|.+ |++++|...|++.. .|+...|..+..+|.+.|++++|++.+...++..+. +...+..+..++...|+
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCC
Confidence 355566667 99999999999864 577888999999999999999999999999885322 45578888899999999
Q ss_pred hHHHHHHHHHHHHcCCC-----------------------------CchHHHHHH-------------------------
Q 007998 124 LFETLQIHSHVLRHGFL-----------------------------ADALLGTTL------------------------- 149 (582)
Q Consensus 124 ~~~a~~~~~~~~~~g~~-----------------------------~~~~~~~~l------------------------- 149 (582)
+++|..-+..+...+.. ++...+..+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 99998765443322100 000000000
Q ss_pred -----HHHH------HhcCCHHHHHHHHhhcCC-----C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHH
Q 007998 150 -----LDVY------AKVGEIVSAKKVFDEMGV-----R-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212 (582)
Q Consensus 150 -----i~~y------~~~g~~~~A~~~f~~m~~-----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t 212 (582)
+..+ ...+++++|.+.|+.... + +...|+.+...+...|++++|+..|++.++.. +.+..+
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~ 367 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQS 367 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHH
Confidence 1101 112578889999987753 2 45678889999999999999999999998774 445678
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhC
Q 007998 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVH 290 (582)
Q Consensus 213 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~ 290 (582)
|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++.. .+.+...|..+...+.+.
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 8899999999999999999999998875 3367889999999999999999999999765 244677888899999999
Q ss_pred CChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChh------hHHhhhhHHhhcCCH
Q 007998 291 GDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK------HYGSVVDLLGRAGRL 363 (582)
Q Consensus 291 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~ 363 (582)
|++++|+..|++..+. .|+ ...+..+..++...|++++|...|++..+.....+.. .++.....+...|++
T Consensus 447 g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 447 GSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 9999999999999874 454 5678888899999999999999999998732111111 122222334457999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 364 QEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 364 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
++|.+++++. ...| +...+..+...+...|++++|...|+++.++.+..
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 9999999885 5556 45678899999999999999999999999987754
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=6.5e-17 Score=173.32 Aligned_cols=329 Identities=10% Similarity=-0.052 Sum_probs=269.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHh
Q 007998 110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQ 186 (582)
Q Consensus 110 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 186 (582)
....++..+.+.|+++.|..+++.++...+.+ ......++......|+.++|...|+++.. .+...|..+...+.+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 45566778889999999999999999886554 44455556677789999999999999853 356789999999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007998 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266 (582)
Q Consensus 187 ~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 266 (582)
.|++++|++.|++..+.. +.+...+..+..++...|+.++|...+..+......+ ...+..+ ..+.+.|++++|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred cCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHH
Confidence 999999999999998874 5667788899999999999999999999887765443 3333333 34788999999999
Q ss_pred HHhccc-C--CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH----HHHHHHHHh
Q 007998 267 VFDNIK-C--RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD----GVRLFNSMA 339 (582)
Q Consensus 267 ~~~~~~-~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~ 339 (582)
.++.+. . .++...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++ |...|+++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 999865 1 1234445556778899999999999999998753 2345677778889999999986 899999998
Q ss_pred HcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417 (582)
Q Consensus 340 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 417 (582)
+.. +.+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|++++|...++++.+.+|.++..+.
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 843 235678889999999999999999999987 4455 5667888889999999999999999999999998877777
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 418 LLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 418 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
.++.++...|++++|...+++..+....
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 7889999999999999999998765443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=5.2e-17 Score=177.76 Aligned_cols=386 Identities=10% Similarity=0.026 Sum_probs=288.4
Q ss_pred hcCCC-CCHHHHHHHHhcCCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH
Q 007998 51 ALSPL-NELAYAHALFRQINA---PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126 (582)
Q Consensus 51 ~~y~~-g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 126 (582)
..... |+.++|.+++....+ .+...+..+...+...|++++|..+|++.+... +.+...+..+...+...|+.++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34444 899999999988653 355568999999999999999999999988753 2245567777788889999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 007998 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNLASEAVDLFKRMKME 203 (582)
Q Consensus 127 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 203 (582)
|...++.+++.. +.+.. +..+..++...|+.++|...+++... .+...+..+...+...|..++|++.++....
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 999999999884 44556 88889999999999999999998853 3566777788888899999999998886653
Q ss_pred CCCCCCH------HHHHHHHHHHh-----ccCCc---HHHHHHHHHHHHc-CCCCchh-H-H---HHHHHHHHhcCCHHH
Q 007998 204 GVFKPNE------VTVLGALAACG-----HLGAW---KEGDKIHEYIREE-RLDMNVV-V-C---NAVIDMYAKCGLLDK 263 (582)
Q Consensus 204 g~~~pd~------~t~~~ll~a~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~---~~li~~y~~~g~~~~ 263 (582)
.|+. .....++.... ..+++ ++|.+.++.+++. ...|+.. . . ...+.++...|++++
T Consensus 179 ---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 179 ---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred ---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 2221 11122222221 11223 6778888888754 2223221 1 1 111334457799999
Q ss_pred HHHHHhcccCC----CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 007998 264 AFEVFDNIKCR----KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP---DDVSYLAALCACNHAGLVDDGVRLFN 336 (582)
Q Consensus 264 A~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~ 336 (582)
|++.|+++... |+. .-..+...|...|++++|+..|+++....... .......+..++...|++++|..+++
T Consensus 256 A~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999988721 221 11225778999999999999999987642111 12445666778899999999999999
Q ss_pred HHhHcCC-----------ccC---hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 007998 337 SMANCGV-----------KPN---MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEI 400 (582)
Q Consensus 337 ~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 400 (582)
.+..... .|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...|++++|++
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9987321 122 234456778889999999999999987 3344 67889999999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
.++++++++|+++..+..++..+...|++++|..+++.+.+...
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999886543
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=1.4e-15 Score=166.71 Aligned_cols=215 Identities=10% Similarity=-0.009 Sum_probs=164.0
Q ss_pred CCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 007998 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302 (582)
Q Consensus 224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (582)
++.++|...+.+..... |+......+...+.+.|++++|...|+++. .+|+...+..+...+.+.|+.++|...|++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555555555554442 333333334445567888888888888665 235555677777788888888889988888
Q ss_pred HHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 007998 303 MGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DM 379 (582)
Q Consensus 303 m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~ 379 (582)
..+.. |+. ..+..+.......|++++|...+++..+. .|+...|..+..++.+.|++++|+..+++. ...| +.
T Consensus 568 AL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~ 643 (987)
T PRK09782 568 AEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS 643 (987)
T ss_pred HHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 87753 443 33334444555679999999999999874 466788888899999999999999999887 5556 56
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
..+..+..++...|++++|+..++++++.+|+++..+..++.++...|++++|...+++..+...
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 77888888999999999999999999999999999999999999999999999999998876553
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=9.3e-16 Score=164.87 Aligned_cols=392 Identities=10% Similarity=0.013 Sum_probs=284.4
Q ss_pred HHHHHhcCCCCCHHHHHHHHhcCCC--CCh-hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChh---HHHHHHHHHH
Q 007998 46 IIEFYALSPLNELAYAHALFRQINA--PST-NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL---TCSFALKACA 119 (582)
Q Consensus 46 ~~~li~~y~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~ 119 (582)
|...|-.+.+|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++.. .|+.. ....+...+.
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHH
Confidence 4555555544999999999988763 332 123388888888899999999999987 33222 2333345777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHH--hCCChhHHHHHH
Q 007998 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA--QGNLASEAVDLF 197 (582)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~--~~g~~~~A~~~~ 197 (582)
..|++++|.++++.+++..+. ++.++..++..|...++.++|++.++++...+......+..+|. ..++..+|++.+
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 889999999999999988643 56777788889999999999999999987554332222444444 356666699999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHH------------------------------------------
Q 007998 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY------------------------------------------ 235 (582)
Q Consensus 198 ~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~------------------------------------------ 235 (582)
+++.+.. |.+...+.....+..+.|-...|.++..+
T Consensus 193 ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 193 SEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 9998875 55666666777777666655555444331
Q ss_pred ------HHH-cCCCCc-hhH-HH---HHHHHHHhcCCHHHHHHHHhcccCCC---CHHHHHHHHHHHHhCCChhHHHHHH
Q 007998 236 ------IRE-ERLDMN-VVV-CN---AVIDMYAKCGLLDKAFEVFDNIKCRK---SLVTWNTMVMAFAVHGDGPRALELF 300 (582)
Q Consensus 236 ------~~~-~~~~~~-~~~-~~---~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 300 (582)
+.. .+..|. ... .. -.+-++.+.|+..++++.|+.++... ...+-.+...+|...+++++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 111 011121 111 12 23446678889999999999987222 2235566889999999999999999
Q ss_pred HHHHhcC-----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCC-----------ccCh---hhHHhhhhHHhhcC
Q 007998 301 EQMGRAG-----VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV-----------KPNM---KHYGSVVDLLGRAG 361 (582)
Q Consensus 301 ~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~li~~~~~~g 361 (582)
+++.... ..++......|.-++...+++++|..+++.+.+... .|+. ..+..++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9986642 122333457788899999999999999999987211 1221 23445677788999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998 362 RLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439 (582)
Q Consensus 362 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 439 (582)
++.+|++.++++ ..-| |...+..+...+...|++..|++.++.+..++|++..+...++.++...|+|.+|..+.+.+
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999987 3344 88899999999999999999999999999999999999999999999999999999988777
Q ss_pred HhCCC
Q 007998 440 KNRDV 444 (582)
Q Consensus 440 ~~~~~ 444 (582)
.+...
T Consensus 511 ~~~~P 515 (822)
T PRK14574 511 ISRSP 515 (822)
T ss_pred HhhCC
Confidence 66544
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1e-15 Score=167.67 Aligned_cols=386 Identities=11% Similarity=0.025 Sum_probs=290.0
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcC---CCCChhHHHHHHHHHHcCCCchHHH
Q 007998 18 SHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQI---NAPSTNDFNAVLRGLAHSSKPTNAV 93 (582)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~ 93 (582)
+.+.+.+++....... +. +. ..+..+...+.+ |++++|..+|++. .+.+...+..++..+...|++++|+
T Consensus 30 ~~~~A~~~~~~~~~~~--~~--~a--~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 30 QDAEVITVYNRYRVHM--QL--PA--RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred CHHHHHHHHHHHHhhC--CC--CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5777887777776522 22 22 113577788888 9999999999984 3456778889999999999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 007998 94 LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173 (582)
Q Consensus 94 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 173 (582)
..+++..+..+ .+.. +..+..++...|+.++|...++.+++..+ .+...+..+..++.+.|..+.|.+.++.... +
T Consensus 104 ~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~ 179 (765)
T PRK10049 104 VKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL-T 179 (765)
T ss_pred HHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C
Confidence 99999988632 2444 77888888999999999999999999863 3566667788899999999999999998775 2
Q ss_pred hh--------HHHHHHHHHH-----hCCCh---hHHHHHHHHHHHc-CCCCCCHH-HHH----HHHHHHhccCCcHHHHH
Q 007998 174 IA--------SWNALIAGLA-----QGNLA---SEAVDLFKRMKME-GVFKPNEV-TVL----GALAACGHLGAWKEGDK 231 (582)
Q Consensus 174 ~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~~pd~~-t~~----~ll~a~~~~~~~~~a~~ 231 (582)
+. ....++.... ..+++ ++|++.++.+.+. .. .|+.. .+. ..+.++...|+.++|..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~-~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD-NPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc-CCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 11 1222233222 22334 7789999998864 22 33321 211 11345567799999999
Q ss_pred HHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998 232 IHEYIREERLD-MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS-----LVTWNTMVMAFAVHGDGPRALELFEQMG 304 (582)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 304 (582)
.|+.+.+.+.+ |+. ....+...|...|++++|+..|+++. ..|. ...+..+..++...|++++|+.+++++.
T Consensus 259 ~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 259 EYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 99999987632 322 22335779999999999999999875 1222 2456667778899999999999999998
Q ss_pred hcC-----------CCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHH
Q 007998 305 RAG-----------VKPDD---VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370 (582)
Q Consensus 305 ~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 370 (582)
... -.|+. ..+..+...+...|++++|+++++++.... +.+...+..+..++...|++++|++.+
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 742 12342 244566778889999999999999998732 445778889999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998 371 KSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416 (582)
Q Consensus 371 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 416 (582)
++. ...| +...+..+...+...|++++|+.+++++++..|+++.+.
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 987 5567 467777788888999999999999999999999887543
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=3e-14 Score=153.37 Aligned_cols=389 Identities=10% Similarity=0.032 Sum_probs=287.7
Q ss_pred cChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHH---HHHHHcCCCchHH
Q 007998 17 VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAV---LRGLAHSSKPTNA 92 (582)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A 92 (582)
++...|...+.++++...... +.+ ..++..+.. |+.++|+..+++...|+...+..+ ...+...|++++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~--~av----~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQS--GQV----DDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred CCHHHHHHHHHHHHhhCccch--hhH----HHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 457788888888876554332 334 377777878 999999999999876644444333 4467788999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-
Q 007998 93 VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV- 171 (582)
Q Consensus 93 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~- 171 (582)
+++|+++.+..+. +...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|.+.++++.+
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999987543 4566777788889999999999999998877 44555555566666566777668888888742
Q ss_pred -C-ChhHHHHHHHHHHhCCChhH------------------------------------------------HHHHHHHHH
Q 007998 172 -R-DIASWNALIAGLAQGNLASE------------------------------------------------AVDLFKRMK 201 (582)
Q Consensus 172 -~-~~~~~~~li~~~~~~g~~~~------------------------------------------------A~~~~~~m~ 201 (582)
| +...+..+.....+.|-... |+.-++.+.
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 2 33444444444444443333 333334433
Q ss_pred Hc-CCCCCCHH----HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-C--
Q 007998 202 ME-GVFKPNEV----TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-C-- 273 (582)
Q Consensus 202 ~~-g~~~pd~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~-- 273 (582)
.. +..++... ...-.+-++...++..++.+.++.+...+.+....+-.++.++|...+++++|+.+|.++. .
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 31 11022212 2234456778889999999999999998877677788899999999999999999999874 1
Q ss_pred -----CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-----------CC--CHH-HHHHHHHHHHcCCCHHHHHHH
Q 007998 274 -----RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV-----------KP--DDV-SYLAALCACNHAGLVDDGVRL 334 (582)
Q Consensus 274 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~~-t~~~ll~a~~~~g~~~~a~~~ 334 (582)
.++......|.-+|...+++++|..+++++.+.-. .| |-. .+..+...+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12334457789999999999999999999987311 12 322 344556678899999999999
Q ss_pred HHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
++.+.... +-|......+.+.+...|.+.+|++.++.. ...| +..+......++...++++.|..+.+.+.+..|++
T Consensus 439 le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 439 LEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 99998743 557888899999999999999999999876 4456 56677788888899999999999999999999988
Q ss_pred chh
Q 007998 413 CGD 415 (582)
Q Consensus 413 ~~~ 415 (582)
+.+
T Consensus 518 ~~~ 520 (822)
T PRK14574 518 IPS 520 (822)
T ss_pred hhH
Confidence 743
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=9.9e-14 Score=152.43 Aligned_cols=384 Identities=11% Similarity=-0.006 Sum_probs=286.1
Q ss_pred HHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHHHHH--HcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 007998 48 EFYALSPL-NELAYAHALFRQINAPSTNDFNAVLRGL--AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124 (582)
Q Consensus 48 ~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 124 (582)
.++..+.+ +.++.|.++.+ ..+.+.. ..++.. ...+...++...++.|.+.... +......+--...+.|+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 318 ATLPVLLKEGQYDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHHHhccHHHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccH
Confidence 44677777 88887777754 3333332 233322 2346677777778878765221 444444444445678999
Q ss_pred HHHHHHHHHHHHc-C-CCCchHHHHHHHHHHHhcCC---HHHHHHH-------------------------HhhcC---C
Q 007998 125 FETLQIHSHVLRH-G-FLADALLGTTLLDVYAKVGE---IVSAKKV-------------------------FDEMG---V 171 (582)
Q Consensus 125 ~~a~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~---~~~A~~~-------------------------f~~m~---~ 171 (582)
++|.+++...... + -..+....+-|++.|.+.+. ..++..+ +.... .
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p 472 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS 472 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC
Confidence 9999999988762 1 12245566688899988876 3333222 11111 1
Q ss_pred C--ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHH
Q 007998 172 R--DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249 (582)
Q Consensus 172 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (582)
+ +...|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|...++++... +|+...+.
T Consensus 473 ~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 473 PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 2 56778888888876 8999999988888776 566655555566667899999999999998665 34445566
Q ss_pred HHHHHHHhcCCHHHHHHHHhccc-CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 007998 250 AVIDMYAKCGLLDKAFEVFDNIK-CRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327 (582)
Q Consensus 250 ~li~~y~~~g~~~~A~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 327 (582)
.+...+.+.|++++|.+.|++.. ..| +...+..+.......|++++|+..|++..+. .|+...+..+..++.+.|+
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCC
Confidence 77888999999999999998775 122 3333333344445669999999999999874 6788889999999999999
Q ss_pred HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKL 405 (582)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 405 (582)
+++|...+++..... +.+...+..+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++
T Consensus 625 ~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 625 VPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999843 335677888888999999999999999976 4455 6788999999999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 406 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
+++.|++..+....++...+..+++.|.+.+++--..++.
T Consensus 704 l~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 704 IDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999999988877665554
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4.1e-13 Score=126.48 Aligned_cols=399 Identities=13% Similarity=0.099 Sum_probs=210.9
Q ss_pred HHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC---------------------------CCH
Q 007998 6 ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL---------------------------NEL 58 (582)
Q Consensus 6 ~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~---------------------------g~~ 58 (582)
++++--+. +.+..+--++..|...|...+ +-+.-.+-.|+..|.. |.+
T Consensus 121 nL~kmIS~---~EvKDs~ilY~~m~~e~~~vS--~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 121 NLLKMISS---REVKDSCILYERMRSENVDVS--EKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred HHHHHHhh---cccchhHHHHHHHHhcCCCCC--HHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 44444443 236677778888887777766 5554323344444432 222
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998 59 AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138 (582)
Q Consensus 59 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 138 (582)
|.-+|+.. +++..+|..||+++++--..+.|.+++++-.....+.+..+||.+|.+..- ..++++..+|....
T Consensus 196 --AdL~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 196 --ADLLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQK 268 (625)
T ss_pred --HHHHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhh
Confidence 22333333 345567778888888777778888888877777677777788887766543 23367777777777
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHh----hc----CCCChhHHHHHHHHHHhCCChhH-HHHHHHHHHHc--C---
Q 007998 139 FLADALLGTTLLDVYAKVGEIVSAKKVFD----EM----GVRDIASWNALIAGLAQGNLASE-AVDLFKRMKME--G--- 204 (582)
Q Consensus 139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~m----~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g--- 204 (582)
..||..++|+++++.++.|+++.|++.+- +| .+|...+|..+|..+.+.++..+ |..++.++... |
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 78888888888888888887776655432 22 13455555555555555555433 23333333221 0
Q ss_pred --CCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHH
Q 007998 205 --VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER----LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278 (582)
Q Consensus 205 --~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~ 278 (582)
..+.|...|.+.+..|.+..+.+.|.+++.-+.... +.|+. ....
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~-----------------------------~~~f 399 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ-----------------------------HRNF 399 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH-----------------------------HHHH
Confidence 101233445555555555555555555554433110 11110 0011
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHh
Q 007998 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358 (582)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 358 (582)
-|..+....++....+..+..|+.|.-.-+-|+..+...+++|..-.+.++-..+++..++.+|-..+.....-+...++
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 23334444444445555555555555444445555555555555555555555555555555442222222222222222
Q ss_pred hcC---------CHHH-----HHHHH-------HhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCc
Q 007998 359 RAG---------RLQE-----ACDIV-------KSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG---SNNC 413 (582)
Q Consensus 359 ~~g---------~~~~-----A~~~~-------~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~ 413 (582)
+.. ++.. |..++ .++ ..+-.....+..+..+.+.|..++|.+++..+.+.+ |..|
T Consensus 480 ~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p 559 (625)
T KOG4422|consen 480 RDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP 559 (625)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence 222 0000 11111 112 112244556666666778888888888888876543 3332
Q ss_pred h--hHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 414 G--DFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 414 ~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
. +..-+.+.-........|..+++.|...+..
T Consensus 560 ~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 560 LLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 2 2223444444556677788888877665543
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=1.5e-12 Score=133.72 Aligned_cols=333 Identities=15% Similarity=0.147 Sum_probs=257.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCChhHHH
Q 007998 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---GVRDIASWNALIAGLAQGNLASEAV 194 (582)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~ 194 (582)
....|++++|..++.++++.. +.....|-.|...|-..|+.+++...+-.. ...|...|-.+.....+.|++.+|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334499999999999999986 446778999999999999999998876543 4557788999999999999999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHH----HHHHHHhcCCHHHHHHHHhc
Q 007998 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA----VIDMYAKCGLLDKAFEVFDN 270 (582)
Q Consensus 195 ~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~y~~~g~~~~A~~~~~~ 270 (582)
-.|.+.++.. +++...+---...|-+.|+...|...|.++.....+.|..-... .+..|...++-+.|.+.++.
T Consensus 228 ~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 228 YCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999886 67777777778889999999999999999988765444433333 35556677777888888876
Q ss_pred cc----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHH--------------------------HHHHH
Q 007998 271 IK----CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY--------------------------LAALC 320 (582)
Q Consensus 271 ~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------------------------~~ll~ 320 (582)
.. ..-+...++.++..|....+++.|......+......||..-+ ..+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 64 1234456788888899999999999888887762222222111 12223
Q ss_pred HHHcCCCHHHHHHHHHHHhHcCCc--cChhhHHhhhhHHhhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCh
Q 007998 321 ACNHAGLVDDGVRLFNSMANCGVK--PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG---TDMVLWQTLLGACQLYGDV 395 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~ll~~~~~~g~~ 395 (582)
+..+....+....+...+....+. -+...|.-+.++|...|++.+|+++|..+... .+..+|.-+...|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 344555556566666666665533 35678889999999999999999999988222 2677999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEE
Q 007998 396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453 (582)
Q Consensus 396 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 453 (582)
+.|.+.+++++.+.|++..+-..|+..|...|+.++|.+++..|..-+....+++.|.
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 9999999999999999999999999999999999999999998774443334555553
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=3.3e-13 Score=127.80 Aligned_cols=398 Identities=10% Similarity=0.082 Sum_probs=266.6
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhc----CCCCCh----hHHHHHHHHHHcCCCchH
Q 007998 21 HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQ----INAPST----NDFNAVLRGLAHSSKPTN 91 (582)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~----~~~~~~----~~~~~li~~~~~~g~~~~ 91 (582)
.+.-.+.-+++..+.++ .-... -.+-+.|.+ ..+..|.+.+.. .|.-+- ...|.+.-.+.+.|.+++
T Consensus 219 ealntyeiivknkmf~n--ag~lk--mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 219 EALNTYEIIVKNKMFPN--AGILK--MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHhhhhhhhhcccccCC--Cceee--eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 34455666777777666 43332 345667777 888888886643 332221 234555567888999999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------------CchHHHHHHHH-----HHH
Q 007998 92 AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL------------ADALLGTTLLD-----VYA 154 (582)
Q Consensus 92 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~~~li~-----~y~ 154 (582)
|+..|+...+. .|+-.+-..|+-++...|+.+..++.|..++..... |+....|.-|. -.-
T Consensus 295 ainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 99999998774 567665555555555678899999999888764322 22233222221 111
Q ss_pred hcC--CHHHHH----HHHhhcCCCChh---HH----------H--------HHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 007998 155 KVG--EIVSAK----KVFDEMGVRDIA---SW----------N--------ALIAGLAQGNLASEAVDLFKRMKMEGVFK 207 (582)
Q Consensus 155 ~~g--~~~~A~----~~f~~m~~~~~~---~~----------~--------~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 207 (582)
+.+ +-+++. ++..-...||-. -| . .-...|.++|+++.|+++++-+.+... +
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn-k 451 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN-K 451 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc-h
Confidence 111 111111 111111122110 00 0 012346788888888888777654332 1
Q ss_pred C------------------------------------CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998 208 P------------------------------------NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251 (582)
Q Consensus 208 p------------------------------------d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 251 (582)
. |+...+.-.+.....|++++|...+.+.+...-.-....|| +
T Consensus 452 ~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-i 530 (840)
T KOG2003|consen 452 TASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-I 530 (840)
T ss_pred hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-h
Confidence 1 11111111122223478888888888887664333333343 3
Q ss_pred HHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHH
Q 007998 252 IDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329 (582)
Q Consensus 252 i~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 329 (582)
.-.+-+.|++++|++.|-++. ...++...-.+...|-...+..+|++++.+.... ++.|...++.|...|-+.|+-.
T Consensus 531 glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 531 GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchh
Confidence 445778899999999998765 2556777777888899999999999999876653 3445567888889999999999
Q ss_pred HHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHH
Q 007998 330 DGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGAC-QLYGDVEMAEIASRKLVE 407 (582)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~ 407 (582)
+|.+.+-.--. -++.+.++..-|..-|....-+++|..+|++. -+.|+..-|..++..| ++.|++++|..+++.+.+
T Consensus 610 qafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 610 QAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred hhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99988765444 24567888888888899999999999999987 5689999999999776 678999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhcCC
Q 007998 408 MGSNNCGDFVLLSNLYAAYER 428 (582)
Q Consensus 408 ~~p~~~~~~~~l~~~~~~~g~ 428 (582)
.-|.+......|..++...|.
T Consensus 689 kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 689 KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hCccchHHHHHHHHHhccccc
Confidence 999999999999999888885
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.7e-12 Score=134.16 Aligned_cols=414 Identities=13% Similarity=0.061 Sum_probs=255.4
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCC------hhHHHHHHHHHHcCCCchH
Q 007998 19 HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPS------TNDFNAVLRGLAHSSKPTN 91 (582)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~ 91 (582)
...|.++........ ..+ |.+. |.|.+.|-- |+++.+..+...+...+ ..+|-.+.++|-..|++++
T Consensus 252 ~~~~~~ll~~ay~~n-~~n--P~~l---~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NEN--PVAL---NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCC--cHHH---HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence 455666666555432 223 6665 788887777 88888877776654322 2357778888888888888
Q ss_pred HHHHHHHHHhCCCCCChh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC----CHHHHHHH
Q 007998 92 AVLWYRQMLRGSHRSDAL--TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG----EIVSAKKV 165 (582)
Q Consensus 92 A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~ 165 (582)
|...|-+..+. .||.+ .+..+.+.+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..+
T Consensus 326 A~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 326 AFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 88888777664 34443 44566778888888888888888888774 445666777777777664 44556655
Q ss_pred HhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHH----HHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 007998 166 FDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRM----KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238 (582)
Q Consensus 166 f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 238 (582)
+.+...+ |...|-.+...+-+..- ..++..|... ...+- ++.+...+.+.......|+++.|...|.....
T Consensus 403 l~K~~~~~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~-~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 403 LGKVLEQTPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGK-QIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHhcccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCC-CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 5554432 45556555555444333 3335555433 23344 45566666666666677777777766666554
Q ss_pred c---CCCCch------hHHHHHHHHHHhcCCHHHHHHHHhccc------------------------------------C
Q 007998 239 E---RLDMNV------VVCNAVIDMYAKCGLLDKAFEVFDNIK------------------------------------C 273 (582)
Q Consensus 239 ~---~~~~~~------~~~~~li~~y~~~g~~~~A~~~~~~~~------------------------------------~ 273 (582)
. ...++. .+-..+...+-..++.+.|.+.|..+. .
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 3 111111 122223333344444444444444332 1
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHc------------CCCHHHHHHHHHHHhH
Q 007998 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDDVSYLAALCACNH------------AGLVDDGVRLFNSMAN 340 (582)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~ 340 (582)
..++..|.-+...|....++..|.+-|...... ...+|..+...|.+.|.. .+..+.|.++|.++++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 233444555555555555555555555444432 123566666666665432 2345677777777776
Q ss_pred cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-C-CCchhH
Q 007998 341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS--MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG-S-NNCGDF 416 (582)
Q Consensus 341 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p-~~~~~~ 416 (582)
.. +.|...-+-+.-.++..|++.+|.++|.+.. ...+..+|-.+...|...|++-.|.++|+..++.. + +++...
T Consensus 641 ~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 641 ND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred cC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 32 4466666777777888888888888887762 12245678888888888888888888888877643 2 456677
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 417 VLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 417 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
..|+.++.+.|++.+|.+.........+
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 7888888888888888887776665443
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=2.2e-15 Score=145.61 Aligned_cols=257 Identities=17% Similarity=0.126 Sum_probs=109.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 007998 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKP-NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258 (582)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~m~~~g~~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 258 (582)
+...+.+.|++++|++++++...... +| |...|..+...+...++.+.|.+.++++...+.. +...+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~-~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIA-PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 35566677777777777755443331 23 3333444455556677788888888877766533 55666667766 678
Q ss_pred CCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 007998 259 GLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFN 336 (582)
Q Consensus 259 g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 336 (582)
+++++|.+++...- ..++...+..++..+.+.++++++..+++++.... ..++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888877653 24566777888888889999999999998877532 34566677778888889999999999999
Q ss_pred HHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998 337 SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414 (582)
Q Consensus 337 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 414 (582)
+..+.. +-+......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...+++..+.+|+|+.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 998843 224677788899999999999887777655 11345668889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 415 DFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 415 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
....++.++...|+.++|.+++.+..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987654
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.1e-11 Score=126.31 Aligned_cols=367 Identities=12% Similarity=0.048 Sum_probs=250.0
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHH
Q 007998 71 PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR--SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148 (582)
Q Consensus 71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 148 (582)
.|++..+.|..-|.-.|++..+..+...+...... .-...|-.+.+++-..|+++.|.+.|....+.....-+..+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 46666777777777778888888888777654211 1123567778888888888888888877766542222334456
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCC----ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 007998 149 LLDVYAKVGEIVSAKKVFDEMGV--R-DIASWNALIAGLAQGN----LASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221 (582)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~ 221 (582)
|..+|.+.|+++.+...|+.+.. | +..+...+...|+..+ ..+.|..++.+..+.- +.|...|..+...+-
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLE 425 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHH
Confidence 77888888888888888887743 2 4566666777777665 4566666666665553 556677777766665
Q ss_pred ccCCcHHHHHHHHHH----HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc------CCCCH------HHHHHHHH
Q 007998 222 HLGAWKEGDKIHEYI----REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK------CRKSL------VTWNTMVM 285 (582)
Q Consensus 222 ~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~------~~~~~li~ 285 (582)
... ......++..+ ...+-.+.+.+.|.+...+...|+++.|...|+... ..+|. .+--.+..
T Consensus 426 ~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 433 33335555443 345556778888999999999999999999887653 12222 22333555
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCH
Q 007998 286 AFAVHGDGPRALELFEQMGRAGVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRL 363 (582)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~ 363 (582)
.+-..++.+.|.+.|....+. .|+-+ .|..++......+...+|...++.... .. .++..++.+...+.+...+
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~--~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS--SNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc--CCcHHHHHHHHHHHhhhhh
Confidence 666677888888998888875 56654 455554333345678888888888887 33 3344444566677777777
Q ss_pred HHHHHHHH----hCCCCCCHHHHHHHHHHHH------------hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 007998 364 QEACDIVK----SVSMGTDMVLWQTLLGACQ------------LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427 (582)
Q Consensus 364 ~~A~~~~~----~~~~~p~~~~~~~ll~~~~------------~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (582)
..|.+-|+ +....+|..+.-+|.+.|. ..+..++|++.|.++++.+|.|..+-+.++.+++..|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 77777443 3333467777777776553 2345788888899999999988888888888899999
Q ss_pred CchHHHHHHHHHHhCCC
Q 007998 428 RWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 428 ~~~~a~~~~~~m~~~~~ 444 (582)
++.+|..+|...++...
T Consensus 661 ~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS 677 (1018)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 99999999988887544
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.8e-10 Score=110.31 Aligned_cols=392 Identities=11% Similarity=0.077 Sum_probs=297.7
Q ss_pred CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 007998 56 NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS 132 (582)
Q Consensus 56 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 132 (582)
+++..|+.+|++.. .++...|-..+..=.++.....|..++++....=+..|..-|.- +-.=-..|++..|+++|+
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY-~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY-IYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH-HHHHHHhcccHHHHHHHH
Confidence 67788999999865 46788899999999999999999999999987544445444432 223345699999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc--CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCC
Q 007998 133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM--GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV-FKPN 209 (582)
Q Consensus 133 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~pd 209 (582)
.-.+. .|+...|++.|+.=.+...++.|+.++++. ..|++.+|--....=.++|+...|..+|....+.-- -..+
T Consensus 166 rW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 166 RWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 88765 789999999999999999999999999986 478999999988888999999999999988765411 0112
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHH---hcc-----c--CCCCHH
Q 007998 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDM-NVVVCNAVIDMYAKCGLLDKAFEVF---DNI-----K--CRKSLV 278 (582)
Q Consensus 210 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~---~~~-----~--~~~~~~ 278 (582)
...|++...-=.+...++.|.-++...++.=... ....|..+...--+-|+........ .++ . .+-|-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 2334444444446678899999999888763221 1556666666666677755444433 122 1 234667
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHH---HcCCCHHHHHHHHHHHhHcCCccChh
Q 007998 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-------VSYLAALCAC---NHAGLVDDGVRLFNSMANCGVKPNMK 348 (582)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~~~~ 348 (582)
+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=-+| ....+++.+.++|+..++ =++....
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkF 401 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKF 401 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccc
Confidence 8888888888889999999999999875 66633 1222222222 357899999999999987 2333445
Q ss_pred hHHhhhhHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 349 HYGSVVDLL----GRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423 (582)
Q Consensus 349 ~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (582)
++.-+--+| .|+.++..|.+++... +.-|-..++...|..-.+.++++....++++.++-+|.+..++...+..-
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 555444444 4788999999999865 88899999999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCCCccCCcccE
Q 007998 424 AAYERWDDVGRVRKAMKNRDVKKVPGFSY 452 (582)
Q Consensus 424 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 452 (582)
...|+++.|+.+|+...+......|..-|
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999999988776555555444
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=4e-11 Score=113.27 Aligned_cols=353 Identities=14% Similarity=0.146 Sum_probs=215.1
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHH--hcCChHHH-HHHHHHHHHcCCCCchHHHHHH
Q 007998 73 TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA--RVLALFET-LQIHSHVLRHGFLADALLGTTL 149 (582)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 149 (582)
+++=|.|+.. ...|...++.-+|+.|...|+..+...-..|++..+ ...++.-+ .+-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3445566554 346788888999999998888777766666665432 22222222 12233333333 2222222
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHH
Q 007998 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229 (582)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a 229 (582)
|.|++.+ ++-+...+...++..||.|.++-...+.|.+++++-..... +.+..+|+.+|.+.+- ..+
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG-KVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHHh----hcc
Confidence 2344333 44444455566777888888877777788888877777666 7777777777766432 233
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH----hccc---CCCCHHHHHHHHHHHHhCCChhH-HHHHHH
Q 007998 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF----DNIK---CRKSLVTWNTMVMAFAVHGDGPR-ALELFE 301 (582)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~----~~~~---~~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 301 (582)
+++..+|....+.||..++|+++.+.++.|+++.|.+.+ .+|+ ++|...+|..+|..+.+.++..+ |..+..
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 677777777777888888888888888888776665443 3333 57777778777777777766633 444444
Q ss_pred HHHh----cCCC---C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cC---CccC---hhhHHhhhhHHhhcCCHHHH
Q 007998 302 QMGR----AGVK---P-DDVSYLAALCACNHAGLVDDGVRLFNSMAN-CG---VKPN---MKHYGSVVDLLGRAGRLQEA 366 (582)
Q Consensus 302 ~m~~----~g~~---p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~---~~~~---~~~~~~li~~~~~~g~~~~A 366 (582)
++.. +.++ | |...|...+..|.+..+.+.|.++...+.. .+ +.|+ ..-|..+.++.+....++.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 2222 3 234567777777777777777777766654 22 2232 12355566666777777777
Q ss_pred HHHHHhC-C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------------------CCCC----------
Q 007998 367 CDIVKSV-S--MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM---------------------GSNN---------- 412 (582)
Q Consensus 367 ~~~~~~~-~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------------~p~~---------- 412 (582)
+..|+.| | .-|+..+...++++....+.++..-+++..+... +|..
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 7777776 2 2355555555666655555555444444333221 1211
Q ss_pred ------------------------chhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 413 ------------------------CGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 413 ------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
+......+-.+.+.|+.++|.+++..+.+++
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 2334456667789999999999999886443
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=4.4e-11 Score=121.79 Aligned_cols=282 Identities=16% Similarity=0.046 Sum_probs=146.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC--hhHHHHHHHHHHhCCChhHHH
Q 007998 120 RVLALFETLQIHSHVLRHGFLADA-LLGTTLLDVYAKVGEIVSAKKVFDEMGV--RD--IASWNALIAGLAQGNLASEAV 194 (582)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~--~~~~~~li~~~~~~g~~~~A~ 194 (582)
..|+++.|++.+....+.. |++ ..+-....++.+.|+.+.|.+.|.+..+ |+ ....-.....+.+.|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3455555555555544432 221 1222333445555555555555555321 11 112222345555566666666
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH---H----hcCCHHHHHHH
Q 007998 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY---A----KCGLLDKAFEV 267 (582)
Q Consensus 195 ~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y---~----~~g~~~~A~~~ 267 (582)
+.++.+.+.. |-+...+..+..++...|+++++.+.+..+.+.+..+.......-..++ . .....+...+.
T Consensus 174 ~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666665553 3444555556666666666666666666666554332221111111111 1 11223333344
Q ss_pred Hhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHcCCCHHHHHHHHHHHhH-c
Q 007998 268 FDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY---LAALCACNHAGLVDDGVRLFNSMAN-C 341 (582)
Q Consensus 268 ~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~-~ 341 (582)
++..+ .+.+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+ .
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 44443 1247778888888888888888888888888774 4444321 1111122334556666666666555 2
Q ss_pred CCccChhhHHhhhhHHhhcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKS---VSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407 (582)
Q Consensus 342 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 407 (582)
.-.|+.....++...+.+.|++++|.+.|+. ....||...+..+...+.+.|+.++|.+++++.+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122213444566666666666666666662 24456666666666666666666666666666544
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=1.8e-11 Score=123.94 Aligned_cols=220 Identities=13% Similarity=0.004 Sum_probs=134.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCch-------hHHHHHHHHH
Q 007998 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV-------VVCNAVIDMY 255 (582)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y 255 (582)
.+...|++++|.+.++++.+.. |-++..+..+...+.+.|+++++..++..+.+.+..++. ..|..++...
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444332 233334444444444444444444444444443322111 1223333333
Q ss_pred HhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 007998 256 AKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333 (582)
Q Consensus 256 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 333 (582)
.+..+.+...++++.++ .+.++.....+..++...|+.++|.+++++..+. .||.... ++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 44445566666666664 2456777778888888888888888888887763 4444221 2333445588888888
Q ss_pred HHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998 334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409 (582)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 409 (582)
..+...+.. +-|...+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+.+++.+.+-
T Consensus 316 ~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888877632 334556777888888888888888888876 667888888888888888888888888888887653
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.5e-11 Score=114.88 Aligned_cols=357 Identities=11% Similarity=0.054 Sum_probs=243.4
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 007998 76 FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSD-ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154 (582)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 154 (582)
+-....-|-++|++++|++.|.+.++ ..|| +..|.....+|...|+++++.+--...++..+. -+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 34455667788899999999999887 4677 667788888888889998888877666665321 2234444445566
Q ss_pred hcCCHHHHH----------------------HHHhh---------cC---CC---ChhHHHHHHHHH-------------
Q 007998 155 KVGEIVSAK----------------------KVFDE---------MG---VR---DIASWNALIAGL------------- 184 (582)
Q Consensus 155 ~~g~~~~A~----------------------~~f~~---------m~---~~---~~~~~~~li~~~------------- 184 (582)
..|++++|. ++++. +. .| .....++....+
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 666665553 22211 11 11 111111111111
Q ss_pred ------------HhCC---ChhHHHHHHHHHHHcCCCCC-----C------HHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 007998 185 ------------AQGN---LASEAVDLFKRMKMEGVFKP-----N------EVTVLGALAACGHLGAWKEGDKIHEYIRE 238 (582)
Q Consensus 185 ------------~~~g---~~~~A~~~~~~m~~~g~~~p-----d------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 238 (582)
...+ .+.+|.+.+.+-.......+ | ..++.....-+.-.|+.-.+..-|+..++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0011 12222222222111000011 1 11122222223345788888888998888
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHH
Q 007998 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSY 315 (582)
Q Consensus 239 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 315 (582)
....+ ...|--+..+|....+.++.++.|+... .+.|..+|..-...+.-.+++++|..=|++.++ +.|+. ..|
T Consensus 355 l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAY 431 (606)
T ss_pred cCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHH
Confidence 76443 3346667788999999999999998765 255677888878888888999999999999987 45654 678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC---------HHHHHHH
Q 007998 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD---------MVLWQTL 385 (582)
Q Consensus 316 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~l 385 (582)
..+-.+..+.+.++++...|++.++ .++...+.|+.....+...+++++|.+.|+.. .++|+ +.+-.++
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 8888888899999999999999988 34566789999999999999999999999865 44443 2233333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 386 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
+..- -.+++..|+.+++++++++|....+|..|+.+-...|+.++|..+|++-.
T Consensus 511 l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 511 LVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3332 34899999999999999999999999999999999999999999999754
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=7.7e-14 Score=134.85 Aligned_cols=256 Identities=16% Similarity=0.070 Sum_probs=71.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCChhHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 007998 80 LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS-FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158 (582)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 158 (582)
...+.+.|++++|+++++.-.....+|+...|- .+...+...++.+.|++.++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444555555556655554433322123332222 2223333455555566655555554422 34444445544 45555
Q ss_pred HHHHHHHHhhcC--CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHH
Q 007998 159 IVSAKKVFDEMG--VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236 (582)
Q Consensus 159 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 236 (582)
.++|.+++...- .++...+..++..+.+.++++++.++++......-.+++...|......+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555554432 223444555555556666666666666655433211334455555555555666666666666666
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH
Q 007998 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314 (582)
Q Consensus 237 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 314 (582)
++..+. |..+.+.++..+...|+.+++.+++.... .+.|...|..+..+|...|+.++|+..|++..... +.|...
T Consensus 173 l~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~ 250 (280)
T PF13429_consen 173 LELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW 250 (280)
T ss_dssp HHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred HHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence 555322 45555556666666666665555554432 13344555566666666666666666666655531 223445
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHh
Q 007998 315 YLAALCACNHAGLVDDGVRLFNSMA 339 (582)
Q Consensus 315 ~~~ll~a~~~~g~~~~a~~~~~~~~ 339 (582)
...+..++...|+.++|.++..++.
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5555556666666666665555443
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=5.9e-11 Score=120.19 Aligned_cols=276 Identities=9% Similarity=0.054 Sum_probs=207.3
Q ss_pred cCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHH--HHHHHHhccCCcHHHH
Q 007998 156 VGEIVSAKKVFDEMGVR--D-IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL--GALAACGHLGAWKEGD 230 (582)
Q Consensus 156 ~g~~~~A~~~f~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~--~ll~a~~~~~~~~~a~ 230 (582)
.|+++.|++.+...++. + ...|........+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 68999999888876543 2 233433345558899999999999999875 56654333 3356778899999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCH--------HHHHHHHHHHHhCCChhHHHHHH
Q 007998 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSL--------VTWNTMVMAFAVHGDGPRALELF 300 (582)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~--------~~~~~li~~~~~~g~~~~A~~~~ 300 (582)
..++.+.+... -+..+...+...|.+.|++++|.+++..+. ...+. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999988863 367888899999999999999999998876 01111 13444444444555666777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-C
Q 007998 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-D 378 (582)
Q Consensus 301 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~ 378 (582)
+.+.+. .+.+......+..++...|+.++|.+++++..+. +|+.... ++......++.+++.+.+++. ...| |
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 776443 3446677788888999999999999999988873 4444322 233334558999999998876 4445 5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 379 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
+..+..+...|...+++++|.+.|+++++.+|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678888899999999999999999999999954 6688999999999999999999987643
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.9e-12 Score=129.14 Aligned_cols=278 Identities=10% Similarity=0.011 Sum_probs=211.6
Q ss_pred CHHHHHHHHhhcCC--CChh-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHhccCCcHHHHHHH
Q 007998 158 EIVSAKKVFDEMGV--RDIA-SWNALIAGLAQGNLASEAVDLFKRMKMEGVF-KPNEVTVLGALAACGHLGAWKEGDKIH 233 (582)
Q Consensus 158 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~pd~~t~~~ll~a~~~~~~~~~a~~~~ 233 (582)
...+|...|...+. +|+. ...-+..+|...+++++|.++|+...+.... --+...|++++--+-+ +-+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46778888888653 2433 3445678889999999999999988765311 1245677777654422 1122222
Q ss_pred H-HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 007998 234 E-YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310 (582)
Q Consensus 234 ~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 310 (582)
. .+++.. +..+.+|-++.+.|+-+++.+.|++.|++.. ..| ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 223332 3457899999999999999999999999775 233 677888888889999999999999998875 456
Q ss_pred CH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 007998 311 DD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLL 386 (582)
Q Consensus 311 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 386 (582)
.. ..|-.+...|.+.++++.|+-.|+++.+ +.| +......+...+-+.|+.|+|++++++. ..+| |+..--.-+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 55 3677788899999999999999999987 334 5566667788899999999999999987 3333 554444455
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
..+...+++++|++.++++.+.-|++...|.+++.+|.+.|+.+.|..-|.-+.+.+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 6677789999999999999999999999999999999999999999988877766544
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=1.2e-10 Score=120.08 Aligned_cols=351 Identities=10% Similarity=0.003 Sum_probs=235.8
Q ss_pred CCCCCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007998 53 SPLNELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ 129 (582)
Q Consensus 53 y~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 129 (582)
|++|++++|.+++.++. +.+...|.+|...|-+.|+.+++...+-...-.. +-|...|..+..-..+.|++++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 44499999999999875 4577889999999999999999988776554433 2356788888888889999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh----hHH----HHHHHHHHhCCChhHHHHHHHHHH
Q 007998 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI----ASW----NALIAGLAQGNLASEAVDLFKRMK 201 (582)
Q Consensus 130 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~----~~~----~~li~~~~~~g~~~~A~~~~~~m~ 201 (582)
.|.++++.. +++....---+.+|-+.|+...|...|.++-..+. .-. -.++..|...++-+.|++.+....
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999886 34544444567889999999999988887753322 222 233556677777788888888776
Q ss_pred HcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc---------------------------CCCCchhH-HHHHHH
Q 007998 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE---------------------------RLDMNVVV-CNAVID 253 (582)
Q Consensus 202 ~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~~-~~~li~ 253 (582)
..+.-..+...++.++..+.+...++.+.......... +..++..+ ...+--
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 63211334455666666777777777777666655541 22233333 222222
Q ss_pred HHHhcCCHHHHHHHHhccc---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH
Q 007998 254 MYAKCGLLDKAFEVFDNIK---CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330 (582)
Q Consensus 254 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 330 (582)
...+.+...+++.-|.... ..-++..|.-+..+|.+.|++.+|+.+|..+......-+...|..+..+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 2334455555555543322 1234556777888888888888888888888875444456678888888888888888
Q ss_pred HHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCChHHHH
Q 007998 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS-----------MGTDMVLWQTLLGACQLYGDVEMAE 399 (582)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~ll~~~~~~g~~~~a~ 399 (582)
|.+.|+.++... +-+...--.|...|-+.|+.++|.+.+..+- ..|+..........+.+.|+.++-.
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 888888888721 2234455567777888888888888888762 1122333333445556667766655
Q ss_pred HHHHHHH
Q 007998 400 IASRKLV 406 (582)
Q Consensus 400 ~~~~~~~ 406 (582)
.....++
T Consensus 547 ~t~~~Lv 553 (895)
T KOG2076|consen 547 NTASTLV 553 (895)
T ss_pred HHHHHHH
Confidence 5544443
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=2.6e-09 Score=106.32 Aligned_cols=409 Identities=11% Similarity=0.051 Sum_probs=320.6
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHH
Q 007998 19 HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVL 94 (582)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 94 (582)
.+.++-+...+++.-.. + .-|.-+|++ ..++.|.+++.... +.+...|.+-...=-.+|+.+...+
T Consensus 392 ~~darilL~rAveccp~-s---------~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 392 PEDARILLERAVECCPQ-S---------MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred hHHHHHHHHHHHHhccc-h---------HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 45577777777654311 1 234455566 77888888887653 4577788877777778888888887
Q ss_pred HHHHH----HhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHhh
Q 007998 95 WYRQM----LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD--ALLGTTLLDVYAKVGEIVSAKKVFDE 168 (582)
Q Consensus 95 ~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~ 168 (582)
+..+- ...|+..+...|..=..+|-..|..-.+..+...++..|++.. ..+|+.-.+.|.+.+.++-|+.+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 77654 4578888988898888889888999999999988888887533 35788888899999999999999987
Q ss_pred cCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCch
Q 007998 169 MGV---RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245 (582)
Q Consensus 169 m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 245 (582)
..+ .+...|......=-..|..++-..+|++....- +-....|.......-..|+...|+.++..+.+.... +.
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-se 618 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SE 618 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cH
Confidence 643 366788888877778899999999999998773 445556666666777889999999999999987644 78
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHH
Q 007998 246 VVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACN 323 (582)
Q Consensus 246 ~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 323 (582)
.+|.+-+..-.....++.|+.+|.+.. ..|....|.--+..---.++.++|++++++.++. -|+- ..|..+...+.
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 888889999999999999999998765 4678888888777777889999999999988874 5665 47777888888
Q ss_pred cCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHH
Q 007998 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM-GT-DMVLWQTLLGACQLYGDVEMAEIA 401 (582)
Q Consensus 324 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~ 401 (582)
+.++++.|...|..=.+ ..+-.+..|-.|.+.=-+.|.+-+|..++++... +| +...|-..+..-.+.|+.+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 89999999888876554 2334567788888888889999999999998732 34 788999999999999999999999
Q ss_pred HHHHHHcCCCC------------------------------chhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 402 SRKLVEMGSNN------------------------------CGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 402 ~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
..++++--|.+ +.....++..+....+++.|++-|.+..+.+
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99888765544 4455567777777788888888888776654
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=5.6e-11 Score=121.02 Aligned_cols=293 Identities=12% Similarity=0.012 Sum_probs=212.8
Q ss_pred HHHHHHHHH--HcCCCchHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 007998 75 DFNAVLRGL--AHSSKPTNAVLWYRQMLRGSHRSDAL-TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD 151 (582)
Q Consensus 75 ~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 151 (582)
....+..+. ...|+++.|.+.+.+..+. .|++. .+.....+....|+.+.+.+.+..+.+....+...+.-....
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 344455544 3579999999999988775 34443 344455777788999999999999987643333345555688
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHH-HHHHHH---hccC
Q 007998 152 VYAKVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL-GALAAC---GHLG 224 (582)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~-~ll~a~---~~~~ 224 (582)
.+...|+++.|...++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++ . +...+. ....++ ...+
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~-~-~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL-F-DDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-C-CHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998853 3677888999999999999999999999999875 3 333331 111222 2222
Q ss_pred CcHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHHH---HHHHHHHHHhCCChhHHH
Q 007998 225 AWKEGDKIHEYIREERL---DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVT---WNTMVMAFAVHGDGPRAL 297 (582)
Q Consensus 225 ~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~---~~~li~~~~~~g~~~~A~ 297 (582)
..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++.. ..||... +..........++.+.++
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 23333344554444322 1378899999999999999999999999775 2344432 122222334457888899
Q ss_pred HHHHHHHhcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998 298 ELFEQMGRAGVKPDDV---SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 298 ~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 373 (582)
+.+++..+. .|+.. ...++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 320 ~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 320 KLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999888764 55554 455778889999999999999996555445788888889999999999999999999863
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.5e-10 Score=107.52 Aligned_cols=314 Identities=11% Similarity=0.081 Sum_probs=220.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHHhCCChhHHHHH
Q 007998 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA-SWNALIAGLAQGNLASEAVDL 196 (582)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~~~~~g~~~~A~~~ 196 (582)
.-+.|....|+..+...+.. -+..|.+-+....-.-+.+.+..+....+..+.. .=--+..+|....+.++++.-
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555544432 1222333333333333344443333333322111 111233455566677788888
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCCHH-HHHHHHhcccC
Q 007998 197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD--MNVVVCNAVIDMYAKCGLLD-KAFEVFDNIKC 273 (582)
Q Consensus 197 ~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~ 273 (582)
.......|+ +.+...-+....+.-...++++|..+|+++.+..+- .|..+|+.++-.-..+.++. -|..+++ +.
T Consensus 250 ~e~l~~~gf-~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-id- 326 (559)
T KOG1155|consen 250 KERLSSVGF-PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-ID- 326 (559)
T ss_pred HHHHHhccC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hc-
Confidence 888888886 555444444555556778899999999998887321 25667766653332222221 2333332 22
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHh
Q 007998 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352 (582)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 352 (582)
+--+.|...+.+-|+-.++.++|...|++..+. .|.. ..|+.+..-|...++...|..-++.+++-. +.|-..|-.
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYG 403 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYG 403 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhh
Confidence 233455666777888899999999999999874 5654 578888889999999999999999999833 457788999
Q ss_pred hhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCch
Q 007998 353 VVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430 (582)
Q Consensus 353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (582)
|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|++.|.++...+..+...|+.|++.|.+.++.+
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 999999999999999999987 6667 89999999999999999999999999999998778899999999999999999
Q ss_pred HHHHHHHHHHh
Q 007998 431 DVGRVRKAMKN 441 (582)
Q Consensus 431 ~a~~~~~~m~~ 441 (582)
+|.+.+++-.+
T Consensus 484 eAa~~yek~v~ 494 (559)
T KOG1155|consen 484 EAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHH
Confidence 99999987765
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.7e-09 Score=103.73 Aligned_cols=377 Identities=10% Similarity=0.046 Sum_probs=217.7
Q ss_pred CCHHHHHHHHhcCC--CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 007998 56 NELAYAHALFRQIN--APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH 133 (582)
Q Consensus 56 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 133 (582)
|++.-|+++|++-- +|+..+|++.|..=.+-..++.|..++++..- +.|+..+|..-.+.=-+.|.+..++++++.
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44444555554422 35555555555555555555555555555543 335555555444444455555555555555
Q ss_pred HHHc-CC-CCchHHHHHHHHHHHhcCCHHHHHHHHhh----cCCCC-hhHHHHHHHHHHhCCChhHHHH--------HHH
Q 007998 134 VLRH-GF-LADALLGTTLLDVYAKVGEIVSAKKVFDE----MGVRD-IASWNALIAGLAQGNLASEAVD--------LFK 198 (582)
Q Consensus 134 ~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~----m~~~~-~~~~~~li~~~~~~g~~~~A~~--------~~~ 198 (582)
+++. |- .-+...+++....=.++..++.|.-+|.- ++... ...|......=-+-|+.....+ -|+
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 5442 10 01112233333333344455555544432 22211 2223333322233343322222 123
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc-hhHHHHHHH--------HHHhcCCHHHHHHHHh
Q 007998 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN-VVVCNAVID--------MYAKCGLLDKAFEVFD 269 (582)
Q Consensus 199 ~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~--------~y~~~g~~~~A~~~~~ 269 (582)
.++..+ +-|-.+|-..+..-...|+.+..+++++..+..-.+.. ...|.-.|- --....+++.+.++|+
T Consensus 313 ~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334443 56667777777777777888888888888876532221 111111111 1123567777888886
Q ss_pred ccc--CCCCHHHHHHHHHHH----HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCC
Q 007998 270 NIK--CRKSLVTWNTMVMAF----AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343 (582)
Q Consensus 270 ~~~--~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 343 (582)
... ++....|+..+--.| .++.+...|.+++...+ |.-|-..+|...|..-.+.++++.+.+++++.++.+
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~- 467 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS- 467 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 543 244445544443333 45677888888887766 567888888888888888888888888888888854
Q ss_pred ccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT----DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419 (582)
Q Consensus 344 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 419 (582)
+-+..+|......=...|+.+.|..+|+-.-..| ....|.+.|.--...|.++.|..+++++++..+... ++...
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhH
Confidence 3466777777777777888888888887652233 356777777777888888899999998888877543 66655
Q ss_pred HHHHH-----hcC-----------CchHHHHHHHHHH
Q 007998 420 SNLYA-----AYE-----------RWDDVGRVRKAMK 440 (582)
Q Consensus 420 ~~~~~-----~~g-----------~~~~a~~~~~~m~ 440 (582)
+..-. ..| ....|+++|++..
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 55443 333 4556777777654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.7e-10 Score=107.34 Aligned_cols=358 Identities=13% Similarity=0.076 Sum_probs=226.9
Q ss_pred hCCCCCCCcchhchHHHHHhc-CCC-CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChh
Q 007998 32 TGQFQSKLFPVRSKIIEFYAL-SPL-NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL 109 (582)
Q Consensus 32 ~~~~~~~~~~~~~~~~~li~~-y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 109 (582)
.+-+.| ++.. -|... +.+ |....|...|-.....-+.-|.+-+....-..+.+ ....... |...|..
T Consensus 158 ~~~~~D--~fll----YL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e----~~~~l~~-~l~~~~h 226 (559)
T KOG1155|consen 158 CGGEKD--EFLL----YLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE----ILSILVV-GLPSDMH 226 (559)
T ss_pred hcccch--hHHH----HHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH----HHHHHHh-cCcccch
Confidence 344555 6664 33333 333 89999999998765433444444443322222222 2222222 1222222
Q ss_pred HHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHH
Q 007998 110 TCS--FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR------DIASWNALI 181 (582)
Q Consensus 110 ~~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li 181 (582)
.+. .+..++......+++.+-.+.....|++.+...-+....++-...|+++|+.+|+++... |..+|...+
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence 222 234566667788888888888888888877777777777788888999999999988643 556776665
Q ss_pred HHHHhCCChhHHHHHHHHH-HHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 007998 182 AGLAQGNLASEAVDLFKRM-KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260 (582)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m-~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 260 (582)
- +++.+.+ +..+.+- .+-+ +--+.|...+.+-|+-.++.++|..+|++.++.+.. ....|+.+..=|....+
T Consensus 307 Y--v~~~~sk--Ls~LA~~v~~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 307 Y--VKNDKSK--LSYLAQNVSNID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKN 379 (559)
T ss_pred H--HHhhhHH--HHHHHHHHHHhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcc
Confidence 3 3333222 2222211 1111 333456777777777778888888888888776533 56777777777888888
Q ss_pred HHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007998 261 LDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNS 337 (582)
Q Consensus 261 ~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 337 (582)
...|.+-++... .+.|-..|-.|..+|...+...-|+-.|++.... +| |...|.+|..+|.+.++.++|++.|..
T Consensus 380 t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888888887543 3667778888888888888888888888887763 44 446778888888888888888888888
Q ss_pred HhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-------C-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007998 338 MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-------S-MGTDM-VLWQTLLGACQLYGDVEMAEIASRKLVEM 408 (582)
Q Consensus 338 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 408 (582)
....| +.+...+..|.++|-+.++.++|...|++- + ..|.. ..-.-|..-+.+.+++++|.....+...-
T Consensus 458 ai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 458 AILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 87744 335566777888888888888887766543 2 22211 11111445556777777777766666555
Q ss_pred CC
Q 007998 409 GS 410 (582)
Q Consensus 409 ~p 410 (582)
++
T Consensus 537 ~~ 538 (559)
T KOG1155|consen 537 ET 538 (559)
T ss_pred Cc
Confidence 43
No 46
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.46 E-value=3e-09 Score=105.96 Aligned_cols=430 Identities=12% Similarity=0.049 Sum_probs=238.7
Q ss_pred HHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC--------CCChhHHH
Q 007998 7 LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN--------APSTNDFN 77 (582)
Q Consensus 7 ~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~--------~~~~~~~~ 77 (582)
|.-|.+.+ +....++.+.....+. ++.+ +.+. .+-...=-. |+.+...++.++-. .-|...|-
T Consensus 412 LwlAlarL--etYenAkkvLNkaRe~-iptd--~~IW---itaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 412 LWLALARL--ETYENAKKVLNKAREI-IPTD--REIW---ITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHhh-CCCC--hhHH---HHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 33444442 3466777777766543 4445 5543 111111122 77777777666531 23455666
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 007998 78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSD--ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK 155 (582)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 155 (582)
.=...|-..|..--+..+....+..|+.-. ..||..-...|.+.+.++-++.+|..+++- ++.+..+|...+..=-.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh
Confidence 666666666666666666666665554422 235666666666666666666666666554 23344555554444444
Q ss_pred cCCHHHHHHHHhhcCC---C----------------------------------ChhHHHHHHHHHHhCCChhHHHHHHH
Q 007998 156 VGEIVSAKKVFDEMGV---R----------------------------------DIASWNALIAGLAQGNLASEAVDLFK 198 (582)
Q Consensus 156 ~g~~~~A~~~f~~m~~---~----------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~ 198 (582)
.|..+.-..+|++... + +...|-+-+..-..+.++++|..+|.
T Consensus 563 hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 4555555555544421 1 33344444444444445555555554
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCC
Q 007998 199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKS 276 (582)
Q Consensus 199 ~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~ 276 (582)
+.... .|+...|.--+..---++..++|.+++++.++. ++.-.-.|-.+.+.+-+.++++.|.+.|..-. ++..
T Consensus 643 kar~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 643 KARSI---SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHhcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 44433 334444433333333344455555555444443 22223444445555555555555555554322 2333
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhH
Q 007998 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356 (582)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 356 (582)
+..|-.+...=-+.|+.-.|..++++....+ +-|...|...+..-.+.|+.+.|..+..+..+ ..+.+...|..-|.+
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ-ECPSSGLLWAEAIWL 796 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCccchhHHHHHHh
Confidence 4445555554455555555555555554432 22334555555555555555555555555544 123344455555555
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 007998 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVR 436 (582)
Q Consensus 357 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 436 (582)
..+.++-....+.+++-. -|+.+.-++...+....+++.|.+-|.+.++.+|++-.++..+...+...|.-++-.+++
T Consensus 797 e~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred ccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 555555444444444442 355556666677778889999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccCCcccEEEE
Q 007998 437 KAMKNRDVKKVPGFSYIEV 455 (582)
Q Consensus 437 ~~m~~~~~~~~~~~s~~~~ 455 (582)
++..... |..|..|..+
T Consensus 875 ~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 875 KKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHhccC--CCCCcHHHHH
Confidence 8776543 4557788644
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=3.1e-10 Score=107.95 Aligned_cols=389 Identities=12% Similarity=0.052 Sum_probs=253.2
Q ss_pred HHHhcCCC-CCHHHHHHHHhcCCC----CChh-HHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHH----HH
Q 007998 48 EFYALSPL-NELAYAHALFRQINA----PSTN-DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL----KA 117 (582)
Q Consensus 48 ~li~~y~~-g~~~~A~~~f~~~~~----~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll----~~ 117 (582)
.|.+.|.- .-..+|+..++-+.+ ||.- .--.+...+.+..++.+|+++|+..+..-+..+..+-..++ -.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 44555555 566788888776653 2322 12234566778889999999999888764444444444444 34
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----------------CChhHHH---
Q 007998 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV----------------RDIASWN--- 178 (582)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------------~~~~~~~--- 178 (582)
+.+.|.++.|..-|++..+. .|+..+--.|+-++..-|+-++..+.|.+|.. |+....|
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 66889999999999999887 56777666677788889999999999988741 2222222
Q ss_pred --HHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCCHHH-------------HH--------HHHHHHhccCCcHHHHHHH
Q 007998 179 --ALIAGLAQGN--LASEAVDLFKRMKMEGVFKPNEVT-------------VL--------GALAACGHLGAWKEGDKIH 233 (582)
Q Consensus 179 --~li~~~~~~g--~~~~A~~~~~~m~~~g~~~pd~~t-------------~~--------~ll~a~~~~~~~~~a~~~~ 233 (582)
.++.-.-+.+ +.++++-.-.+++.--+ .||... +. .-..-+.+.|+++.|.+++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi-~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVI-APDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhcccc-ccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 2333332222 22233322223322222 333210 10 1112356789999999998
Q ss_pred HHHHHcCCCCchhHHHHHHHHHH------------------------------------hcCCHHHHHHHHhcccCCCCH
Q 007998 234 EYIREERLDMNVVVCNAVIDMYA------------------------------------KCGLLDKAFEVFDNIKCRKSL 277 (582)
Q Consensus 234 ~~~~~~~~~~~~~~~~~li~~y~------------------------------------~~g~~~~A~~~~~~~~~~~~~ 277 (582)
.-+.+..-..-....+.|--.+. ..|++++|.+.|.+.. ..|.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal-~nda 521 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL-NNDA 521 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH-cCch
Confidence 87765432222222222211111 3466777777777665 4454
Q ss_pred HHHHHH---HHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhh
Q 007998 278 VTWNTM---VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354 (582)
Q Consensus 278 ~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 354 (582)
..-.+| .-.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++.+... -++.|....+.|.
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHH
Confidence 433332 33456678888888888776542 234556677777888888888888888876654 2445678888999
Q ss_pred hHHhhcCCHHHHHHHH-HhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHH
Q 007998 355 DLLGRAGRLQEACDIV-KSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV 432 (582)
Q Consensus 355 ~~~~~~g~~~~A~~~~-~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 432 (582)
+.|-+.|+-..|.+.. +....-| +..+..-|...|....-+++++..|+++.-..|+...--..++.++.+.|++..|
T Consensus 600 dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred HHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999998875 4444444 6666666777777778889999999999888896655556677778899999999
Q ss_pred HHHHHHHHhC
Q 007998 433 GRVRKAMKNR 442 (582)
Q Consensus 433 ~~~~~~m~~~ 442 (582)
..+++....+
T Consensus 680 ~d~yk~~hrk 689 (840)
T KOG2003|consen 680 FDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=2.6e-11 Score=121.10 Aligned_cols=278 Identities=12% Similarity=0.066 Sum_probs=205.1
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCChhHHHHH
Q 007998 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR------DIASWNALIAGLAQGNLASEAVDL 196 (582)
Q Consensus 123 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~ 196 (582)
+..+|...|..+... ..-+..+...+..+|...+++++|+++|+.+... +...|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777774444 3334577777888888888888888888877532 56677776654322 122333
Q ss_pred H-HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCC
Q 007998 197 F-KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK 275 (582)
Q Consensus 197 ~-~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 275 (582)
+ +.+.... +-.+.||..+.++|.-+++.+.|.+.|++.++.+. -....|+.+..=+.....+|.|...|+... ..
T Consensus 409 Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al-~~ 484 (638)
T KOG1126|consen 409 LAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKAL-GV 484 (638)
T ss_pred HHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhh-cC
Confidence 3 3333333 66678899999999989999999999988887642 167788888777888888999999998776 55
Q ss_pred CHHH---HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHH
Q 007998 276 SLVT---WNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG 351 (582)
Q Consensus 276 ~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 351 (582)
|+.. |.-+...|.+.++++.|+-.|++..+ +.|. .+....+...+-+.|+.++|+++++++...+.+ |...--
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 5554 44567789999999999999999887 4554 456667777888899999999999999873322 222222
Q ss_pred hhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 352 SVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 352 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
-.+..+...+++++|+..++++ .+.| +..++..+...|.+.|+.+.|+.-|.-+.+++|.-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 3456677889999999999988 4455 56677778889999999999999999999999864
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=4.9e-10 Score=102.52 Aligned_cols=312 Identities=14% Similarity=0.107 Sum_probs=166.6
Q ss_pred CCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc--hHHHHHHHHHHHhcCCHHHH
Q 007998 86 SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF-LAD--ALLGTTLLDVYAKVGEIVSA 162 (582)
Q Consensus 86 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~--~~~~~~li~~y~~~g~~~~A 162 (582)
+.++++|+++|-+|.+.... +..+-.+|-+.|.+.|..+.|+.+|+.+.++.- +.+ ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 35678888888888774221 233445666777778888888888887776521 111 12233344555555555555
Q ss_pred HHHHhhcCCCC---hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc
Q 007998 163 KKVFDEMGVRD---IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239 (582)
Q Consensus 163 ~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 239 (582)
+.+|..+.... ..+..-|+..|-...+|++|+++-.++.+.+- .+..+-
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-q~~~~e--------------------------- 178 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-QTYRVE--------------------------- 178 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhH---------------------------
Confidence 55555554322 22334445555555555555555555554432 221110
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 007998 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA 317 (582)
Q Consensus 240 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 317 (582)
-...|.-|...+....+++.|..++.+.. .+..+..--.+...+...|+++.|.+.++...+++..--..+...
T Consensus 179 ----IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 179 ----IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred ----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 01223334444444555666666665443 122333333455566677777777777777766532222345566
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChH
Q 007998 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI-VKSVSMGTDMVLWQTLLGACQLYGDVE 396 (582)
Q Consensus 318 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~g~~~ 396 (582)
|..+|.+.|+.+++..++..+.+....++ .-..|.+.-....-.+.|... .+++.-+|+...+..|+..-...
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d---- 328 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD---- 328 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc----
Confidence 66777777777777777777766322222 222233332333333344333 33444456665555555432111
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEE
Q 007998 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF 463 (582)
Q Consensus 397 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~ 463 (582)
+.-|++.+...++..|....++..|.|.+-.-+-..|.|.
T Consensus 329 ---------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 329 ---------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred ---------------------------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 1234566777777788777777777666655555555554
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.5e-09 Score=106.54 Aligned_cols=387 Identities=10% Similarity=-0.018 Sum_probs=270.7
Q ss_pred HHHhcCCC-CCHHHHHHHHhc--CCCCChhHHHHHHHHHHcCCCchHHHHHHH----HHHhC---------CCCCChhH-
Q 007998 48 EFYALSPL-NELAYAHALFRQ--INAPSTNDFNAVLRGLAHSSKPTNAVLWYR----QMLRG---------SHRSDALT- 110 (582)
Q Consensus 48 ~li~~y~~-g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~---------g~~p~~~~- 110 (582)
-+.++|.- |.++.|..+... +...|..+.......+.+..++++|+.++. .+... -+.+|..-
T Consensus 54 ~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~ 133 (611)
T KOG1173|consen 54 WLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGE 133 (611)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccc
Confidence 45566655 777777766653 557788888888889999999999999988 32110 01111111
Q ss_pred ---HHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH------------------hcCCHHHH
Q 007998 111 ---CSFA-------LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA------------------KVGEIVSA 162 (582)
Q Consensus 111 ---~~~l-------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~------------------~~g~~~~A 162 (582)
-+.- -+.+....+.++|+..+..++...+.-. ..+-.|+.... ...+.+.-
T Consensus 134 ~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~-Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l 212 (611)
T KOG1173|consen 134 DLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF-EAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERL 212 (611)
T ss_pred cccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH-HHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHH
Confidence 0111 1234455667788887777765532211 11111111110 00111222
Q ss_pred HHHHhhc----C----------------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 007998 163 KKVFDEM----G----------------VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 222 (582)
Q Consensus 163 ~~~f~~m----~----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~ 222 (582)
+.+|+-. . +.++...-.-..-+...+++.+..++++...+.. ++....+..-|.++..
T Consensus 213 ~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~e 290 (611)
T KOG1173|consen 213 EILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYE 290 (611)
T ss_pred HHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHH
Confidence 2233311 0 1133344444556778899999999999998876 6666667777778888
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 007998 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELF 300 (582)
Q Consensus 223 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 300 (582)
.|+..+-..+=..+++.- +....+|-++.--|...|+..+|++.|.+.. .+.=...|-.....|+-.|..|+|+..+
T Consensus 291 l~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 291 LGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred hcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHH
Confidence 888887777777777763 4467889999999999999999999998765 1334578999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC--C---
Q 007998 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV--S--- 374 (582)
Q Consensus 301 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~--- 374 (582)
...-+. ++-...-+.-+..-|.+.++.+.|.++|.+... +-| |+...+-+.-.....+.+.+|..+|+.. +
T Consensus 370 ~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 370 FTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 887663 111222233455578889999999999999886 334 5566666666667788999999988765 1
Q ss_pred ---CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 375 ---MGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 375 ---~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
..+ -..+|+.|..+|++.+.+++|+..+++.+.+.|.++.+|..++-+|...|+++.|...|.+..-
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 111 3456888999999999999999999999999999999999999999999999999999987654
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=1.7e-10 Score=108.06 Aligned_cols=197 Identities=11% Similarity=0.030 Sum_probs=162.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007998 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321 (582)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 321 (582)
....+..+...|.+.|++++|.+.|++.. .+.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45677788889999999999999998764 23456788888899999999999999999988753 3345667777888
Q ss_pred HHcCCCHHHHHHHHHHHhHc-CCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007998 322 CNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMA 398 (582)
Q Consensus 322 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 398 (582)
+...|++++|.+.+++.... ........+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999999873 22234456777888899999999999999876 3334 567888888999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
...+++..+..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888899999999999999999887764
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=5.8e-09 Score=98.56 Aligned_cols=285 Identities=11% Similarity=0.044 Sum_probs=146.4
Q ss_pred CCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 007998 86 SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV 165 (582)
Q Consensus 86 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 165 (582)
.|+|.+|.++..+-.+.+..|- ..|.....+.-..|+.+.+-..+..+-+....++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4666666666666555543322 234444455555666666666666665553344455555555556666666666555
Q ss_pred Hhhc---CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC
Q 007998 166 FDEM---GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242 (582)
Q Consensus 166 f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 242 (582)
.++. ..+++.........|.+.|++.+...++..|.+.|. -.|+.. .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~-l~~~e~-----------------~~l---------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL-LSDEEA-----------------ARL---------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC-CChHHH-----------------HHH----------
Confidence 4433 234555556666666666666666666666666554 222110 000
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320 (582)
Q Consensus 243 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (582)
...+|+.+++=....+..+.-...++..+ .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+. ..+-
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLI 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHH
Confidence 11233333333333333333333444443 2334444555555666666666666666666665555541 1222
Q ss_pred HHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHH
Q 007998 321 ACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMA 398 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a 398 (582)
.+.+.++.+.-.+..+.-.+ .+-.| ..+..|...|.+.+.+.+|.+.|+.. +..|+...|+-+..++.+.|+.++|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 34455555555555554444 33333 44445555555666666666655543 4555556666666666666666666
Q ss_pred HHHHHHHH
Q 007998 399 EIASRKLV 406 (582)
Q Consensus 399 ~~~~~~~~ 406 (582)
.+..++.+
T Consensus 381 ~~~r~e~L 388 (400)
T COG3071 381 EQVRREAL 388 (400)
T ss_pred HHHHHHHH
Confidence 55555554
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=2.2e-09 Score=98.31 Aligned_cols=252 Identities=16% Similarity=0.138 Sum_probs=190.0
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCH
Q 007998 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN---VVVCNAVIDMYAKCGLL 261 (582)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~ 261 (582)
.-+.+.++|.++|-+|.+.. +.+..+-.++.+.+.+.|..+.|..+|+.+.++.--+. ....-.|..-|...|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 34678999999999998864 55666778889999999999999999999887532111 23445677789999999
Q ss_pred HHHHHHHhcccCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHcCCCHHHHHHHH
Q 007998 262 DKAFEVFDNIKCRKS--LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV----SYLAALCACNHAGLVDDGVRLF 335 (582)
Q Consensus 262 ~~A~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~ 335 (582)
|.|+.+|..+..+|. ......|+..|-...++++|++.-+++.+.+-++..+ .|.-+........+++.|...+
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999998872232 3466778999999999999999999998876565543 4555666666778999999999
Q ss_pred HHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD--MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 336 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
++..+.+ +..+..--.+.+.+...|+++.|.+.++.+ ..+|+ ..+...|..+|...|+.++++..+.++.+..+.
T Consensus 204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g- 281 (389)
T COG2956 204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG- 281 (389)
T ss_pred HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-
Confidence 9988743 223333345778899999999999999887 33454 456778889999999999999999999998874
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 413 CGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 413 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
+..-..+...-....-.+.|.....+-.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 3455555655555555666666554443
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=8.2e-10 Score=116.88 Aligned_cols=263 Identities=14% Similarity=0.017 Sum_probs=189.3
Q ss_pred ChhHHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh---------ccCCcHHHHHHHHHHHH
Q 007998 173 DIASWNALIAGLAQ-----GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG---------HLGAWKEGDKIHEYIRE 238 (582)
Q Consensus 173 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~---------~~~~~~~a~~~~~~~~~ 238 (582)
+...|...+.+-.. .+..++|+++|++..+.. +.+...|..+..++. ..+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 55666666666322 234679999999998874 445556666655443 23457899999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH-HH
Q 007998 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV-SY 315 (582)
Q Consensus 239 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 315 (582)
... .+...+..+..++...|++++|...|++.. .+.+...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 763 367888889999999999999999999764 2445678999999999999999999999999885 45532 23
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 007998 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYG 393 (582)
Q Consensus 316 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g 393 (582)
..++..+...|++++|...++++.....+-+...+..+..+|...|++++|...++++ +..|+ ...++.+...+...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 3344456668999999999999886432224455677888899999999999999987 44554 444555556667766
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 394 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
+.|...++++++..-..+..+..+...|.-.|+-+.+... +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4888888887775422222233367777778887777766 7676543
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=5.1e-09 Score=98.95 Aligned_cols=275 Identities=11% Similarity=0.081 Sum_probs=202.4
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHH
Q 007998 156 VGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232 (582)
Q Consensus 156 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~ 232 (582)
.|++..|++...+-.+ ..+..|..-+.+--+.|+.+.+-.++.+.-+... .++...+.+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5888888888776532 3445566666777788888888888888876632 45555666666777888888888888
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCC-----------HHHHHHHHHHHHhCCChhHHHHHHH
Q 007998 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS-----------LVTWNTMVMAFAVHGDGPRALELFE 301 (582)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~ 301 (582)
..++.+.+.. ++.+.....++|.+.|++.+...+...+. +.. ..+|+.++.-....+..+.-...|+
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~-ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLR-KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHH-HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 8888877643 67777888888888888888888888776 221 2357777766666666666555666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHH----HhCCCCC
Q 007998 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV----KSVSMGT 377 (582)
Q Consensus 302 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~p 377 (582)
+.-.+ .+-+...-.+++.-+.+.|+.++|.++..+..+.+..|+... ++ ...+-++.+.-.+.. +..|.
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~~-~~l~~~d~~~l~k~~e~~l~~h~~-- 326 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---LI-PRLRPGDPEPLIKAAEKWLKQHPE-- 326 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---HH-hhcCCCCchHHHHHHHHHHHhCCC--
Confidence 65443 344555566777788899999999999999999777776222 11 223445544444333 34454
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
++..+.+|...|.+++.+.+|...|+..++..| +...|..++.++.+.|+..+|.+++++-..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 447889999999999999999999999999998 568999999999999999999999987663
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=2.1e-09 Score=108.65 Aligned_cols=230 Identities=15% Similarity=0.169 Sum_probs=174.5
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHc-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHhccc---------CC
Q 007998 211 VTVLGALAACGHLGAWKEGDKIHEYIREE-----RL-DMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIK---------CR 274 (582)
Q Consensus 211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~---------~~ 274 (582)
.|...+...|...|+++.|...+...++. |. .|.+ ...+.+...|...+++++|..+|+++. ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46777888999999999999999887754 21 1222 333457788999999999999998764 11
Q ss_pred C-CHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----cCCC-CCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhH-cC--C
Q 007998 275 K-SLVTWNTMVMAFAVHGDGPRALELFEQMGR-----AGVK-PDD-VSYLAALCACNHAGLVDDGVRLFNSMAN-CG--V 343 (582)
Q Consensus 275 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~--~ 343 (582)
| -..+++.|..+|...|++++|...+++..+ .|.. |.. .-++.+...|...+.+++|..+++...+ .. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 234678888899999999998888877654 1222 222 2466777789999999999999998877 32 2
Q ss_pred ccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH--
Q 007998 344 KPN----MKHYGSVVDLLGRAGRLQEACDIVKSV---------SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVE-- 407 (582)
Q Consensus 344 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 407 (582)
.++ ..+++.|...|...|++++|++++++. ...+ ....++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 367899999999999999999999876 1122 245677888999999999999999998654
Q ss_pred --cCCC---CchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 408 --MGSN---NCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 408 --~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
.+|+ ...+|..|+..|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3454 45688899999999999999999988765
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.3e-08 Score=96.17 Aligned_cols=301 Identities=11% Similarity=-0.013 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHh--cCChHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH---HH
Q 007998 109 LTCSFALKACAR--VLALFETLQIHSHVLR-HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL---IA 182 (582)
Q Consensus 109 ~~~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~ 182 (582)
.+...-+.+++. .++-..+.+.+-.+.. .-++.|+.....+..+|...|+.++|+..|++...-|+.+...| .-
T Consensus 195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~ 274 (564)
T KOG1174|consen 195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAV 274 (564)
T ss_pred cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHH
Confidence 344444444443 2344444444433333 33566788899999999999999999999998765544433332 33
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007998 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262 (582)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 262 (582)
.+.+.|+++....+...+.... +-....|..-+......++++.|..+-++.++... .++..+-.-...+...|+.+
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchH
Confidence 4567889998888888887553 33444455555555677888888888888877642 24555555567788899999
Q ss_pred HHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH-HHHH-cCCCHHHHHHHHHHH
Q 007998 263 KAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL-CACN-HAGLVDDGVRLFNSM 338 (582)
Q Consensus 263 ~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~ 338 (582)
+|.-.|+... .+-+..+|.-|+..|...|.+.+|..+-+...+. ++.+..+...+. ..|. ....-++|.++++..
T Consensus 352 ~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 9999998654 2458889999999999999999999888776654 344556665552 3333 233457888888887
Q ss_pred hHcCCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 339 ANCGVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 339 ~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
.+ +.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|...++..+.+++|...|..+++++|++..+
T Consensus 431 L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 431 LK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred hc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 76 3454 355667788899999999999999876 667899999999999999999999999999999999987544
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=1.3e-10 Score=119.18 Aligned_cols=263 Identities=14% Similarity=0.152 Sum_probs=192.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCC
Q 007998 195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274 (582)
Q Consensus 195 ~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 274 (582)
.++-.+...|+ .|+.+||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. .
T Consensus 11 nfla~~e~~gi-~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGI-LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------E 80 (1088)
T ss_pred hHHHHHHHhcC-CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------C
Confidence 45677888999 999999999999999999999999 9999988888888999999999999988877664 7
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhh
Q 007998 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSV 353 (582)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l 353 (582)
|...+|+.|..+|.++|+... ++..++ -...+...++..|.-..-..++..+.- .+.-||... .
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 888999999999999999866 333222 122344455666666665666655443 445566553 4
Q ss_pred hhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHH
Q 007998 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG-DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV 432 (582)
Q Consensus 354 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 432 (582)
+....-.|.++.+++++..+|...-......+++-+.... .+++-..+.+...+ .| ++.+|..+...-..+|+.+.|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhH
Confidence 5556677888899999988864321111111344443332 33444444444444 44 778999999999999999999
Q ss_pred HHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccc
Q 007998 433 GRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL 499 (582)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 499 (582)
..+...|+++|+...+++.|.. +.|- +....++...+-|++.|+.|+..+.-
T Consensus 224 k~ll~emke~gfpir~HyFwpL--------l~g~-------~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPL--------LLGI-------NAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhh--------hhcC-------ccchHHHHHHHHHHHhcCCCCcchhH
Confidence 9999999999999999999963 3332 23345556778899999999987553
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.2e-11 Score=84.25 Aligned_cols=50 Identities=30% Similarity=0.550 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 007998 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324 (582)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 324 (582)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=8.3e-12 Score=85.08 Aligned_cols=50 Identities=16% Similarity=0.399 Sum_probs=47.0
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 007998 71 PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120 (582)
Q Consensus 71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 120 (582)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999864
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=2.5e-08 Score=96.38 Aligned_cols=352 Identities=10% Similarity=-0.021 Sum_probs=241.6
Q ss_pred HHHhcCCC-CCHHHHHHHHhcCC--CCC-hhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcC
Q 007998 48 EFYALSPL-NELAYAHALFRQIN--APS-TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL-TCSFALKACARVL 122 (582)
Q Consensus 48 ~li~~y~~-g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~ 122 (582)
..-+-|-+ |.+++|.+.+.... .|| ++-|.....+|...|+|++..+.-...++ +.|+-. .+..-.+++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 44455556 99999999999865 477 88899999999999999998887777766 344422 3444444555555
Q ss_pred ChHHHHH----------------------HHHH--------HHHcCCCCchHHHHHHHHHHHhc------------C---
Q 007998 123 ALFETLQ----------------------IHSH--------VLRHGFLADALLGTTLLDVYAKV------------G--- 157 (582)
Q Consensus 123 ~~~~a~~----------------------~~~~--------~~~~g~~~~~~~~~~li~~y~~~------------g--- 157 (582)
++.+++. ++.. -.+.+-+|.. -....|..|... +
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~l-PS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVL-PSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCC-CcHHHHHHHHhhccccccccccCCCccc
Confidence 5554432 1111 1110111111 111222222210 0
Q ss_pred --CHHHHHHHHhhc------------C----------CCC---------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 007998 158 --EIVSAKKVFDEM------------G----------VRD---------IASWNALIAGLAQGNLASEAVDLFKRMKMEG 204 (582)
Q Consensus 158 --~~~~A~~~f~~m------------~----------~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 204 (582)
...++.+.+..- . ..+ ..+.+.-...+.-.|+..+|.+-|+..+...
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 011122111111 0 011 1222222334566799999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHH
Q 007998 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNT 282 (582)
Q Consensus 205 ~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 282 (582)
. . +...|.-+..+|....+.++..+.|....+.+.. +..+|..-.+++.-.+++++|..-|++.. .+.++..|-.
T Consensus 357 ~-~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 357 P-A-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred c-c-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 3 3 3333888888999999999999999999988644 78888889999999999999999999765 2345667777
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC---------hhhHHhh
Q 007998 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN---------MKHYGSV 353 (582)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~---------~~~~~~l 353 (582)
+..+..+.+++++++..|++..+. ++.-...|+.....+...++++.|.+.|+..++. .|+ ..+--++
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhH
Confidence 777778889999999999999886 4444578888999999999999999999999872 222 1111122
Q ss_pred hhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998 354 VDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409 (582)
Q Consensus 354 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 409 (582)
+-.- =.+++..|.+++++. .+.| ....|.+|...-.+.|+.++|+++|++...+-
T Consensus 511 l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 511 LVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2111 238999999999987 6666 56789999999999999999999999987764
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=1.3e-09 Score=111.97 Aligned_cols=249 Identities=11% Similarity=0.047 Sum_probs=128.3
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 007998 94 LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD 173 (582)
Q Consensus 94 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 173 (582)
.++..|...|+.|+..||.++|.-|+..|+++.|- +|..|.-...+.+..+++.++....+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34555666677777777777777777777776666 6666666666666666777776666666665554 455
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHH-HH-------HcCCCCCCHHHHHHHHHHHh--------------ccCCcHHHHH
Q 007998 174 IASWNALIAGLAQGNLASEAVDLFKR-MK-------MEGVFKPNEVTVLGALAACG--------------HLGAWKEGDK 231 (582)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~~pd~~t~~~ll~a~~--------------~~~~~~~a~~ 231 (582)
..+|+.|..+|.++|+..- ++..++ |. ..|+ ..-..-+-..+.+|- ..|-++.+.+
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gv-gs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGV-GSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhcc-CcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777766543 222222 11 1222 111111111111111 1111222222
Q ss_pred HHHHHHHcCCCCchhHHHH---HHHHHHhc-CCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC
Q 007998 232 IHEYIREERLDMNVVVCNA---VIDMYAKC-GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307 (582)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~---li~~y~~~-g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 307 (582)
+...+ |....++. +++-.... ..+++-...-......++..++.+.+..-...|+.+.|..++.+|.+.|
T Consensus 161 ll~~~------Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 161 LLAKV------PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHhhC------CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 21111 11000000 01111111 1122222222222223667777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcC
Q 007998 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361 (582)
Q Consensus 308 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 361 (582)
++.+..-|-.++-+ .++...+..+..-|.+.|+.|+.+|+.-.+-.+...|
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 76666555555533 5666666666666666777777777665555444433
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=8.7e-09 Score=109.12 Aligned_cols=240 Identities=10% Similarity=-0.037 Sum_probs=143.3
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH---------hcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCh
Q 007998 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYA---------KVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNLA 190 (582)
Q Consensus 123 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---------~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 190 (582)
+.++|.+.++++++..+. +...+..+..+|. ..+++++|...+++..+ .+..+|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 356677777777766422 3444555544443 22346777777776643 2566777777777777888
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 007998 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270 (582)
Q Consensus 191 ~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 270 (582)
++|+..|++..+.+ +.+...+..+..++...|++++|...+++.++.... +...+..++..+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 88888887777764 455666777777777778888888888777776433 222333344445567777888777776
Q ss_pred cc--CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHhH-cCCcc
Q 007998 271 IK--CRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY-LAALCACNHAGLVDDGVRLFNSMAN-CGVKP 345 (582)
Q Consensus 271 ~~--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~ 345 (582)
.. ..| +...+..+..+|...|+.++|...++++... .|+..+. +.+...+...| +.+...++.+.+ ..-.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 53 123 3445666777777788888888887776543 4444333 33333445555 466666666665 33333
Q ss_pred ChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998 346 NMKHYGSVVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 373 (582)
....+.. ..|.-.|+-+.+..+ +++
T Consensus 508 ~~~~~~~--~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 508 NNPGLLP--LVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred cCchHHH--HHHHHHhhhHHHHHH-HHh
Confidence 3333322 334445555555444 555
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=3.8e-09 Score=98.88 Aligned_cols=193 Identities=10% Similarity=-0.042 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 007998 73 TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV 152 (582)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 152 (582)
...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++..++.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455566666666667777776666665542 1134455555566666666666666666666554 2234455555566
Q ss_pred HHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcH
Q 007998 153 YAKVGEIVSAKKVFDEMGV-----RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227 (582)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~ 227 (582)
|...|++++|.+.|++... .....|..+...+...|++++|.+.|.+..... +.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHH
Confidence 6666666666666655432 122344445555556666666666666555443 333444555555555555555
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 007998 228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270 (582)
Q Consensus 228 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 270 (582)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555555444 122333444444445555555555544443
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.1e-09 Score=100.16 Aligned_cols=232 Identities=11% Similarity=0.061 Sum_probs=173.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 007998 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK 257 (582)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 257 (582)
+-|..+|.+.|.+.+|.+.|+.-+.. .|-+.||..+-.+|.+..+++.|..++.+-++. ++.|+.....+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 56788899999999999999888877 667778888888999999999999888888776 34456666667777777
Q ss_pred cCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 007998 258 CGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF 335 (582)
Q Consensus 258 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 335 (582)
.++.++|.++|+... .+.++.+...+..+|.-.++++-|+..|+++..-|+. +...|+.+.-+|.-.++++-+..-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 888888888887654 2345556666667777777888888888887777654 4456666666676677777666666
Q ss_pred HHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 336 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
++...---.| ++ -..+|..|.......||+..|.+.|+-.+..+|++..+
T Consensus 382 ~RAlstat~~------------------~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 382 QRALSTATQP------------------GQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHHhhccCc------------------ch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 6555411111 11 23456666666677889999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 416 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
++.|+..-.+.|++++|..+++...+...
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 99999999999999999999988776543
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.7e-08 Score=96.31 Aligned_cols=280 Identities=12% Similarity=0.020 Sum_probs=216.8
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 007998 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG 215 (582)
Q Consensus 139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ 215 (582)
...++.+.....+-+...+++.+..++++..-+. +...+..-|..+...|+..+-..+=.+|.+.- |..+.+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhh
Confidence 3445666667777888899999999999988654 34556666788899999998888888898874 677889999
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCCh
Q 007998 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDG 293 (582)
Q Consensus 216 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~ 293 (582)
+..-|-..|..++|+++|.+....... -...|-.+...|+-.|.-++|...+.... .+.....+--+..-|.+.++.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 999999999999999999988765321 35678888999999999999988776443 122222233355568889999
Q ss_pred hHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhH--cCCc----cChhhHHhhhhHHhhcCCHHHH
Q 007998 294 PRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMAN--CGVK----PNMKHYGSVVDLLGRAGRLQEA 366 (582)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~--~~~~----~~~~~~~~li~~~~~~g~~~~A 366 (582)
+-|.+.|.+... +.|+. ..++-+.-..-+.+.+.+|..+|+..+. ..+. ....+++.|..+|.+.+++++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999998875 55654 4555555555567899999999998874 1111 1345678899999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 367 CDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423 (582)
Q Consensus 367 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (582)
+..+++. ...| |..++.++.-.|...|+++.|...|.+.+-+.|++..+-..|..+.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9999976 3344 8889999999999999999999999999999998866655555443
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=1.6e-08 Score=98.08 Aligned_cols=213 Identities=15% Similarity=0.100 Sum_probs=145.3
Q ss_pred CCcHHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHH
Q 007998 224 GAWKEGDKIHEYIREER-LDM--NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALE 298 (582)
Q Consensus 224 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 298 (582)
+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++.. .+.+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666666432 222 24567778888889999999998888654 24567889999999999999999999
Q ss_pred HHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CC
Q 007998 299 LFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SM 375 (582)
Q Consensus 299 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 375 (582)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.+++. ..
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99988873 565 457777777888889999999999988873 343322222222344567889999888654 22
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------HcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLV-------EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 376 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
.|+...| .......|+...+ ..++.+. ++.|..+.+|..++.+|...|++++|...|++..+.++
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332222 1222335555443 3444444 44555667899999999999999999999998886654
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=1.5e-08 Score=102.68 Aligned_cols=232 Identities=15% Similarity=0.094 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHc-----CCCCCCHHHHH-HHHHHHhccCCcHHHHHHHHHHHHc-----CCC-C
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKME-----GVFKPNEVTVL-GALAACGHLGAWKEGDKIHEYIREE-----RLD-M 243 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~~pd~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~-----~~~-~ 243 (582)
+...+...|...|++++|+.+++..++. |...|...+.. .+...|...+++.+|..+|++++.. |-. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444778888888888888888877654 22144444433 3667788889999999888887643 211 1
Q ss_pred -chhHHHHHHHHHHhcCCHHHHHHHHhccc---------CCCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHhc---CCC
Q 007998 244 -NVVVCNAVIDMYAKCGLLDKAFEVFDNIK---------CRKSLV-TWNTMVMAFAVHGDGPRALELFEQMGRA---GVK 309 (582)
Q Consensus 244 -~~~~~~~li~~y~~~g~~~~A~~~~~~~~---------~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 309 (582)
-..+++.|..+|.+.|++++|...+++.. ..|.+. ..+.++..+...+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 24566777778999999998888777542 123333 3566777888999999999999876542 233
Q ss_pred CCH----HHHHHHHHHHHcCCCHHHHHHHHHHHhH-c---CC--cc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-----
Q 007998 310 PDD----VSYLAALCACNHAGLVDDGVRLFNSMAN-C---GV--KP-NMKHYGSVVDLLGRAGRLQEACDIVKSV----- 373 (582)
Q Consensus 310 p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~---~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~----- 373 (582)
++. .+++.+...|.+.|++++|.++|++++. . +- .+ ....++.|...|.+.+++++|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 333 4789999999999999999999998887 2 11 12 2356677888999999999898888754
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998 374 ---SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVE 407 (582)
Q Consensus 374 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 407 (582)
+..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34454 56899999999999999999999998874
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.09 E-value=5e-07 Score=92.38 Aligned_cols=399 Identities=13% Similarity=0.043 Sum_probs=254.8
Q ss_pred CCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC-h
Q 007998 34 QFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINA---PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSD-A 108 (582)
Q Consensus 34 ~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 108 (582)
+..| +.++ -.|.-+..+ |+++.+.+.|++..+ .....|+.+...|+-.|.-..|+.+++.-......|+ .
T Consensus 319 ~qnd--~ai~---d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 319 FQND--AAIF---DHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred hcch--HHHH---HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 3445 6665 455555556 999999999998643 3456799999999999999999999988766443344 3
Q ss_pred hHHHHHHHHHH-hcCChHHHHHHHHHHHHc--CC--CCchHHHHHHHHHHHhcC-----------CHHHHHHHHhhcCC-
Q 007998 109 LTCSFALKACA-RVLALFETLQIHSHVLRH--GF--LADALLGTTLLDVYAKVG-----------EIVSAKKVFDEMGV- 171 (582)
Q Consensus 109 ~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~g-----------~~~~A~~~f~~m~~- 171 (582)
..+-..-+.|. +.+..+++...-.+++.. +. ......+-.+.-+|...- ...++.+.+++..+
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 44444445555 456777777777776662 11 122344555555554321 23455666666532
Q ss_pred --CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHH
Q 007998 172 --RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN 249 (582)
Q Consensus 172 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (582)
.|..+-.-+.--|+..++.+.|++..++..+.+. ..+...|..+.-.+...+++.+|..+.+.....- ..|.....
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~ 551 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNR-GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMD 551 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhch
Confidence 2333323334446778889999999999988855 7788888888888888999999999888776431 11111111
Q ss_pred HHHHHHHhcCCHHHHHH--------------------------HHhccc----CCCCHH-HHHHHHHHHHhCCChhHHHH
Q 007998 250 AVIDMYAKCGLLDKAFE--------------------------VFDNIK----CRKSLV-TWNTMVMAFAVHGDGPRALE 298 (582)
Q Consensus 250 ~li~~y~~~g~~~~A~~--------------------------~~~~~~----~~~~~~-~~~~li~~~~~~g~~~~A~~ 298 (582)
.-+..-..-++.++|.. .+..+. ...|.. ++..+. +... -+.+.+..
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~s 629 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGS 629 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhccc
Confidence 11111112333333322 222221 011111 222211 1111 01000000
Q ss_pred HHHHHHhcCCC--CCH------HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHH
Q 007998 299 LFEQMGRAGVK--PDD------VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370 (582)
Q Consensus 299 ~~~~m~~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 370 (582)
-.. |...-+. |+. ..|......+...+..++|...+.+..... ......|......+...|.+++|.+.|
T Consensus 630 e~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 630 ELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 000 1111122 332 234556667888999999988888777621 334566666778888999999999988
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 371 KSV-SMGT-DMVLWQTLLGACQLYGDVEMAEI--ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 371 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
... .+.| ++.+..++...+...|+...|.. ++..+++.+|.++..|..|+.++.+.|+.++|...|+...+..
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 765 6667 57788999999999999888888 9999999999999999999999999999999999999877543
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=4.1e-07 Score=84.58 Aligned_cols=380 Identities=12% Similarity=0.049 Sum_probs=218.8
Q ss_pred hcCCCCCHHHHHHHHhcCCC------CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 007998 51 ALSPLNELAYAHALFRQINA------PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL 124 (582)
Q Consensus 51 ~~y~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 124 (582)
+..++.++.-|+.+++--.. .++..| +...+-+.|++++|+..+.-..+.. .|+...+..+.....-.|.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44444788888888765331 123333 3446678899999999999887753 55666777777666678899
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC------------------------------CHHHHHHHHhhcCC--C
Q 007998 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVG------------------------------EIVSAKKVFDEMGV--R 172 (582)
Q Consensus 125 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g------------------------------~~~~A~~~f~~m~~--~ 172 (582)
.+|+++-....+ ++.....|.+.--+.+ .+.+|.+++.++.. |
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 999887765422 2222222223333333 34555556555532 2
Q ss_pred ChhHHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCcHHHHHH--------------HHHH
Q 007998 173 DIASWNA-LIAGLAQGNLASEAVDLFKRMKMEGVFKPN-EVTVLGALAACGHLGAWKEGDKI--------------HEYI 236 (582)
Q Consensus 173 ~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~~pd-~~t~~~ll~a~~~~~~~~~a~~~--------------~~~~ 236 (582)
+-...|. |.-.|.+..-++-+.++++--++. -|| +...+.......+.=.-..|.+- .+.+
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 2333333 233455666666666666655544 333 33333332222222111111111 1111
Q ss_pred HHcCC------------CC-----chhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCC-------
Q 007998 237 REERL------------DM-----NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD------- 292 (582)
Q Consensus 237 ~~~~~------------~~-----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~------- 292 (582)
.+.++ -| -+..--.|+-.|.+.+++++|..+...+. +.++.-|-.-.-.++..|+
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~-PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD-PTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC-CCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 11110 01 12233345667889999999999999887 5554444333333344333
Q ss_pred hhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHH
Q 007998 293 GPRALELFEQMGRAGVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371 (582)
Q Consensus 293 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 371 (582)
..-|.+.|+-.-+.+..-|.. ---++.+++.-..++++...+++.+..+=...|...+| +.++++..|.+.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHh
Confidence 345555555444443332221 11223333444567888888888888854456666665 7889999999999999998
Q ss_pred hCC--CCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHcC-CCC-chhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007998 372 SVS--MGTDMVLWQTLL-GACQLYGDVEMAEIASRKLVEMG-SNN-CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK 446 (582)
Q Consensus 372 ~~~--~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 446 (582)
.+. .-.|..+|.+++ ..|.+.++++.|..++- +.+ |.+ -.....+++-|.+++.+--|.+.|+.+...+..|
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 873 113677777766 55677888888866654 444 322 2344467788889999999999999887655443
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=9.2e-09 Score=94.32 Aligned_cols=220 Identities=11% Similarity=-0.026 Sum_probs=100.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCCh
Q 007998 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--R-DIASWNALIAGLAQGNLA 190 (582)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~ 190 (582)
+.++|.+.|.+.+|.+-++..++. .|-+.+|-.|-.+|.+..+...|+.+|.+-.+ | |+....-+.+.+-..++.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 334444444444444444444444 22233333344444444444455444444321 1 222233334444444455
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 007998 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270 (582)
Q Consensus 191 ~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 270 (582)
++|.++|+...+.. +.+......+...|.-.+++|.|..+++++++.|.. +...|+.+.-+|.-.+++|-++.-|++
T Consensus 307 ~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 55555555544443 334444444444444445555555555555555533 444444444444444555555544443
Q ss_pred cc---CCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998 271 IK---CRKS--LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMAN 340 (582)
Q Consensus 271 ~~---~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 340 (582)
.. ..|+ ...|..+.......|++.-|.+.|+-.... .|+ ...++.|.-.-.+.|++++|..+++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 32 1222 234444444444555555555555544432 222 23455544444555555555555555443
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=1.7e-07 Score=90.95 Aligned_cols=219 Identities=11% Similarity=0.014 Sum_probs=143.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007998 188 NLASEAVDLFKRMKMEGVFKPN--EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265 (582)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 265 (582)
+..+.++.-+.+++...-..|+ ...|......+...|+.++|...|.+.++... .+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 4556677777777654211222 34566677777788888888888888877653 35778888888888888888888
Q ss_pred HHHhccc-C-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCC
Q 007998 266 EVFDNIK-C-RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343 (582)
Q Consensus 266 ~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 343 (582)
+.|++.. . +.+..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.+.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 8888664 2 335667888888888888899998888888764 455432222222344567888888888765542 1
Q ss_pred ccChhhHHhhhhHHhhcCCHH--HHHHHHHh-CCC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998 344 KPNMKHYGSVVDLLGRAGRLQ--EACDIVKS-VSM----GT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413 (582)
Q Consensus 344 ~~~~~~~~~li~~~~~~g~~~--~A~~~~~~-~~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 413 (582)
.|+...+ .++..+ .|++. ++.+.+.+ ... .| ....|..+...+...|++++|...|+++++.+|.+.
T Consensus 196 ~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 196 DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 2332222 233333 34433 33333322 111 11 345788899999999999999999999999997553
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.5e-06 Score=81.15 Aligned_cols=282 Identities=10% Similarity=-0.012 Sum_probs=183.3
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHH
Q 007998 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV-TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA 250 (582)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 250 (582)
.|+.....+...+...|+.++|+..|++.... .|+.. ....-.-.+.+.|+.+....+...+.... +-+...|-.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 36777788888888888888888888887654 23322 22222233456677777777666665432 112222322
Q ss_pred HHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCC
Q 007998 251 VIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGL 327 (582)
Q Consensus 251 li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 327 (582)
-........+++.|+.+-++.. .+.++..+-.-...+.+.|+.++|.-.|+..+. +.| +...|..|+..|.-.|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhch
Confidence 3333444567777777776554 134444554445677788888888888888776 354 44688888888888888
Q ss_pred HHHHHHHHHHHhHcCCccChhhHHhhh-hHHh-hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 007998 328 VDDGVRLFNSMANCGVKPNMKHYGSVV-DLLG-RAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASR 403 (582)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 403 (582)
..+|.-.-+...+ -++.+..+.+.+. ..+. ..---++|.+++++. .++|+ ....+.+...|...|..+.+..+++
T Consensus 384 ~kEA~~~An~~~~-~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 384 FKEANALANWTIR-LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH-HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 8888776666555 1123333333221 1121 122246788888765 66775 3455666778888888888998888
Q ss_pred HHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHH
Q 007998 404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM 483 (582)
Q Consensus 404 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 483 (582)
+.+...|+ ...++.|+..+.....+++|...|...... .|+.+.+.+-++++.
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHH
Confidence 88888884 467888888888888888888888766543 355667777788777
Q ss_pred HHHH
Q 007998 484 FKIK 487 (582)
Q Consensus 484 ~~m~ 487 (582)
+.|+
T Consensus 516 K~~~ 519 (564)
T KOG1174|consen 516 KSDD 519 (564)
T ss_pred hccC
Confidence 7766
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.1e-05 Score=78.55 Aligned_cols=395 Identities=14% Similarity=0.077 Sum_probs=211.5
Q ss_pred cChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHH--HHHHH--HcCCCchH
Q 007998 17 VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNA--VLRGL--AHSSKPTN 91 (582)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~--li~~~--~~~g~~~~ 91 (582)
++.+.+.+.-..++..+ +.+ ++.. -.=+-+..+ +.+++|+.+.+.-+.- .+++. +=.+| -+.+..++
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd--~~a~---~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDD--EDAI---RCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCc--HhhH---hhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHH
Confidence 45777777777777665 222 2222 233333445 8888888666544321 12222 23344 36678888
Q ss_pred HHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 007998 92 AVLWYRQMLRGSHRSDA-LTCSFALKACARVLALFETLQIHSHVLRHGFLA-DALLGTTLLDVYAKVGEIVSAKKVFDEM 169 (582)
Q Consensus 92 A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m 169 (582)
|+..+. |..++. .+...-.+.|-+.+++++|..+|+.+.+.+.+. +...-..++.+-. .-.+. +.+..
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v 167 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSV 167 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhc
Confidence 888877 233333 355555667778889999999998887775321 1111112211110 01111 22223
Q ss_pred CCCChhH---HHHHHHHHHhCCChhHHHHHHHHHHHc-------CCCC-----CCHH-HHHHHHHHHhccCCcHHHHHHH
Q 007998 170 GVRDIAS---WNALIAGLAQGNLASEAVDLFKRMKME-------GVFK-----PNEV-TVLGALAACGHLGAWKEGDKIH 233 (582)
Q Consensus 170 ~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~-----pd~~-t~~~ll~a~~~~~~~~~a~~~~ 233 (582)
+.....+ +......+...|++.+|++++...... +-.. .+.. .-.-+.-++...|+-++|.+++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 2221212 222234455666677776666665211 1000 0000 1112223344566666666666
Q ss_pred HHHHHcCCCCc---hhHHHHHH-----------------------------------------------HHHHhcCCHHH
Q 007998 234 EYIREERLDMN---VVVCNAVI-----------------------------------------------DMYAKCGLLDK 263 (582)
Q Consensus 234 ~~~~~~~~~~~---~~~~~~li-----------------------------------------------~~y~~~g~~~~ 263 (582)
..+++...... ...-|.|+ .+|. +..+.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q 325 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQ 325 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHH
Confidence 66665542211 11112222 2221 22233
Q ss_pred HHHHHhccc-CCCCHHHHHHHHHH-H-HhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHH--
Q 007998 264 AFEVFDNIK-CRKSLVTWNTMVMA-F-AVHGDGPRALELFEQMGRAGVKPDD--VSYLAALCACNHAGLVDDGVRLFN-- 336 (582)
Q Consensus 264 A~~~~~~~~-~~~~~~~~~~li~~-~-~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~-- 336 (582)
++++-...+ ..|. ..+.+++.. + .+.....+|.+++...-+. .|+. ......+......|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 326 VRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333333333 1122 223333332 2 2223466777777766553 3444 344445556678999999999999
Q ss_pred ------HHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 007998 337 ------SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--------SMGT-DMVLWQTLLGACQLYGDVEMAEIA 401 (582)
Q Consensus 337 ------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 401 (582)
.+.+.+..|. +...++.+|.+.+..+-|-.++.+. .-.+ -..+|.-+...-.++|+-++|..+
T Consensus 403 ~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 5554333444 4456788888888766666665543 2222 123344444555678999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 007998 402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437 (582)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 437 (582)
++++.+.+|++..+...+..+|++.. .+.|..+-+
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 99999999999999999999998763 455555443
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.99 E-value=1.5e-05 Score=80.39 Aligned_cols=388 Identities=10% Similarity=0.011 Sum_probs=243.1
Q ss_pred CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 007998 56 NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSD-ALTCSFALKACARVLALFETLQIH 131 (582)
Q Consensus 56 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 131 (582)
|+.++|......-. .++.+.|..+.-.+-...++++|+..|+..+.. .|| ...+.-+.-.-++.++++.....-
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 88899888776544 356788999988888889999999999999875 344 455665555556778888777777
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHH------HHHHHHhCCChhHHHHHHHHH
Q 007998 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-----RDIASWNA------LIAGLAQGNLASEAVDLFKRM 200 (582)
Q Consensus 132 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~------li~~~~~~g~~~~A~~~~~~m 200 (582)
...++.. +.....|..++-++--.|+...|..+.++... ++...+.- ......++|..++|++.+..-
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 7776653 33556788888888888888888888776531 33333222 224456788888888887665
Q ss_pred HHcCCCCCCHHHH-HHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhcccCC-CCH
Q 007998 201 KMEGVFKPNEVTV-LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF-EVFDNIKCR-KSL 277 (582)
Q Consensus 201 ~~~g~~~pd~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~-~~~ 277 (582)
... ..|...+ ..-...+.+.+++++|..++..++.... .+..-|..+..++.+--+.-++. .+|...... |-.
T Consensus 212 e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 212 EKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 433 2344433 3445667788999999999999888742 24444445555665333333333 556554311 110
Q ss_pred HHHHHHHHHHHhCCC-hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHH----HHHHHhHcCC---------
Q 007998 278 VTWNTMVMAFAVHGD-GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR----LFNSMANCGV--------- 343 (582)
Q Consensus 278 ~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~----~~~~~~~~~~--------- 343 (582)
..-..+--...+..+ .+..-.++..+.+.|++|--..+ .+.+-.....+--.+ +...+...|.
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl---~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL---RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh---HHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 000001011111222 23444566777777776533333 333322222221111 1111111111
Q ss_pred -ccChh--hHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 007998 344 -KPNMK--HYGSVVDLLGRAGRLQEACDIVKSV-SMGTDM-VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418 (582)
Q Consensus 344 -~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 418 (582)
+|... ++-.++..|-+.|+++.|+..++.. .-.|+. ..|..-.+.+...|+++.|...++++.+++..|...-.-
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 34443 3446788899999999999999976 555653 345555578889999999999999999998666433335
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCc-----cCCcccEE
Q 007998 419 LSNLYAAYERWDDVGRVRKAMKNRDVK-----KVPGFSYI 453 (582)
Q Consensus 419 l~~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~s~~ 453 (582)
-+.-..++.+.++|..+.....+.|.. ....|.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf 484 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWF 484 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHH
Confidence 566667899999999999888766531 11257775
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.95 E-value=9.3e-08 Score=84.03 Aligned_cols=163 Identities=13% Similarity=0.073 Sum_probs=131.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHH
Q 007998 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357 (582)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 357 (582)
+...|..+|.+.|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|++..... +-+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3455667788888888888888888774 5554 477777778888888888888888888732 23456677777778
Q ss_pred hhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHH
Q 007998 358 GRAGRLQEACDIVKSVSMGT----DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433 (582)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 433 (582)
|..|++++|...|++.-..| -..+|..+.-+..+.|+.+.|+..|++.++.+|+.+.+...+.....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 88889999998888762222 35678888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 007998 434 RVRKAMKNRDV 444 (582)
Q Consensus 434 ~~~~~m~~~~~ 444 (582)
..+++...++.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99998887664
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.92 E-value=2.8e-05 Score=78.21 Aligned_cols=351 Identities=11% Similarity=0.143 Sum_probs=209.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 007998 75 DFNAVLRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153 (582)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 153 (582)
.|-..+.....+|+.......|+..+.. .+......|...+......+-++-+..+++..++.. +..-+--|.-+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 5666666666666666666666665543 122233456666666666666666666666666542 22244455566
Q ss_pred HhcCCHHHHHHHHhhcCCC----------ChhHHHHHHHHHHhCCChh---HHHHHHHHHHHcCCCCCCH--HHHHHHHH
Q 007998 154 AKVGEIVSAKKVFDEMGVR----------DIASWNALIAGLAQGNLAS---EAVDLFKRMKMEGVFKPNE--VTVLGALA 218 (582)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~pd~--~t~~~ll~ 218 (582)
++.+++++|.+.+...... +-..|+-+-...+++-+.- ...++++.+... -+|. ..|.++..
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLAD 256 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHHH
Confidence 6666666666666655422 2234544444444332221 222333333322 2333 24566666
Q ss_pred HHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----------------C------CHHHHHHHHhccc----
Q 007998 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC----------------G------LLDKAFEVFDNIK---- 272 (582)
Q Consensus 219 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~----------------g------~~~~A~~~~~~~~---- 272 (582)
-|.+.|.++.|..++++.+..- .++.-++.+.+.|+.- | +++-...-|+.+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 6666666666666666655431 1222233333333211 1 1222233333321
Q ss_pred ----------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHcCCCHHHHHHHHH
Q 007998 273 ----------CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD------VSYLAALCACNHAGLVDDGVRLFN 336 (582)
Q Consensus 273 ----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~ 336 (582)
.+.++..|..-+.. ..|+..+-+..|.+.... +.|-. ..|..+...|-..|+++.|+.+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 12345556554443 367788888888888764 44432 457788888999999999999999
Q ss_pred HHhHcCCccC---hhhHHhhhhHHhhcCCHHHHHHHHHhC---CCCC-----------------CHHHHHHHHHHHHhcC
Q 007998 337 SMANCGVKPN---MKHYGSVVDLLGRAGRLQEACDIVKSV---SMGT-----------------DMVLWQTLLGACQLYG 393 (582)
Q Consensus 337 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p-----------------~~~~~~~ll~~~~~~g 393 (582)
+..+-..+-- ..+|....++=.+..+++.|+++++.. |..| +...|..++..--..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9988333222 456777777778889999999999876 3221 2346666666667778
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 007998 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437 (582)
Q Consensus 394 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 437 (582)
-++.-..++++++++.--.|......+..+....-++++.++++
T Consensus 492 tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88899999999999887677777777777777777888888875
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=3.7e-06 Score=84.48 Aligned_cols=256 Identities=8% Similarity=-0.060 Sum_probs=129.5
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHh
Q 007998 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG----HLGAWKEGDKIHEYIREERLDMN-VVVCNAVIDMYAK 257 (582)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~ 257 (582)
.+...|++++|.+.+++..+.. |.|...+.. ...+. ..+....+.+.+.. .....|+ ......+...+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 3455666666666666665542 333333331 11111 22333333333332 1111222 2333345556666
Q ss_pred cCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCCH--HHHHHHHHHHHcCCCHHHHH
Q 007998 258 CGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPDD--VSYLAALCACNHAGLVDDGV 332 (582)
Q Consensus 258 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~ 332 (582)
.|++++|.+.+++.. .+.+...+..+...|...|++++|+..+++...... .|+. ..|..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 777777776666543 133445566666666677777777777666655321 1222 23344555666677777777
Q ss_pred HHHHHHhHcCC-ccChhhH-H--hhhhHHhhcCCHHHHHH------HHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007998 333 RLFNSMANCGV-KPNMKHY-G--SVVDLLGRAGRLQEACD------IVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIA 401 (582)
Q Consensus 333 ~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~A~~------~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 401 (582)
.++++...... .+..... + .++.-+...|....+.+ ..... +.............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 77776653111 1111111 1 12222222332222211 11111 1111112223455667788888888888
Q ss_pred HHHHHHcCC---------CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 402 SRKLVEMGS---------NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 402 ~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
++.+....- .........+.++...|++++|.+.+.......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888765321 123455667777889999999999988776543
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6.6e-07 Score=88.02 Aligned_cols=367 Identities=13% Similarity=0.094 Sum_probs=231.6
Q ss_pred CCHHHHHHHHhcC---CCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcCChHHHHHHH
Q 007998 56 NELAYAHALFRQI---NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDA-LTCSFALKACARVLALFETLQIH 131 (582)
Q Consensus 56 g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~ 131 (582)
|+++.|...|-.. .++|-+.|..-..+|+..|++++|++=-.+-++ +.|+. ..|+..-.+....|++++|+..|
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 9999999999764 356888899999999999999999887777666 45664 47888888888999999999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhh------cC-CC------ChhHHHHHHHHHHhCC-------Chh
Q 007998 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE------MG-VR------DIASWNALIAGLAQGN-------LAS 191 (582)
Q Consensus 132 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~------m~-~~------~~~~~~~li~~~~~~g-------~~~ 191 (582)
..-++.. +.+...++.|.+++.... .+-+.|.. .. .| ....|..++..+-++- +.+
T Consensus 94 ~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 94 SEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 8888875 446677888888872110 11111111 00 00 1123344443322210 111
Q ss_pred HHHHHHHHHHH--------cCC------CCC------------C----------HHHHHHHHHHHhccCCcHHHHHHHHH
Q 007998 192 EAVDLFKRMKM--------EGV------FKP------------N----------EVTVLGALAACGHLGAWKEGDKIHEY 235 (582)
Q Consensus 192 ~A~~~~~~m~~--------~g~------~~p------------d----------~~t~~~ll~a~~~~~~~~~a~~~~~~ 235 (582)
........+.. .|. ..| | ..-...+.++.-+..+++.+.+-+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11111111100 000 011 0 11244555666666677777777777
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCH----------HHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL----------VTWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 236 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
.++.. .+..-++....+|...|.+.++...-+... +..- .....+..+|...++++.|+..|.+...
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~-E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAV-EVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHH-HHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 76654 456666667777777777666555443322 1111 1122244466667778888888877665
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh--hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 007998 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM--KHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVL 381 (582)
Q Consensus 306 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 381 (582)
....||..+ +....+++.+..+...- +.|.. .... =...+.+.|++.+|.+.|.++ ...| |...
T Consensus 327 e~Rt~~~ls---------~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~-kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 327 EHRTPDLLS---------KLKEAEKALKEAERKAY--INPEKAEEERE-KGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred hhcCHHHHH---------HHHHHHHHHHHHHHHHh--hChhHHHHHHH-HHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 544444322 22233444443333332 22332 1111 145567889999999999876 3345 7888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 382 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
|....-+|.+.|++..|+.-.+..++++|+....|..-+.++....+|+.|...|++-.+.+
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998877665
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.90 E-value=2.9e-05 Score=78.19 Aligned_cols=379 Identities=14% Similarity=0.125 Sum_probs=210.3
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCC------CCCChhHHHHHHHHHHhcCChHHHHH
Q 007998 56 NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS------HRSDALTCSFALKACARVLALFETLQ 129 (582)
Q Consensus 56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~a~~ 129 (582)
|-++-+.+++.+-.+-++..-+..|..++..+++++|-+.+...+... .+.+...|.-+-...++..+.-....
T Consensus 152 ~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln 231 (835)
T KOG2047|consen 152 GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN 231 (835)
T ss_pred CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC
Confidence 444455555544333333334455555555555555555555543211 11122233333333333222222111
Q ss_pred HHHHHHHcCC--CCc--hHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHh----------------C
Q 007998 130 IHSHVLRHGF--LAD--ALLGTTLLDVYAKVGEIVSAKKVFDEMGVR--DIASWNALIAGLAQ----------------G 187 (582)
Q Consensus 130 ~~~~~~~~g~--~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~----------------~ 187 (582)
+ +.+++.|+ -+| -..|++|.+-|.+.|.++.|..+|++.... .+.-++.+-.+|++ .
T Consensus 232 v-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 232 V-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEES 310 (835)
T ss_pred H-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 1 11222221 223 246778888888888888888888765322 11112222222221 1
Q ss_pred CC------hhHHHHHHHHHHHcCCC----------CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC------ch
Q 007998 188 NL------ASEAVDLFKRMKMEGVF----------KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM------NV 245 (582)
Q Consensus 188 g~------~~~A~~~~~~m~~~g~~----------~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~------~~ 245 (582)
|+ .+-.+.-|+.+.+.+.. +-+..+|..-... ..|+..+-...+.++++. +.| -.
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPG 387 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChh
Confidence 11 12223333333322110 2222333333322 235566666677776654 222 24
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcccCC--CC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCC----------
Q 007998 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCR--KS----LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK---------- 309 (582)
Q Consensus 246 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------- 309 (582)
..|..+.+.|-..|+++.|+.+|++.... +. ..+|......=.++.+++.|+++.++.....-.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 57788999999999999999999977511 22 346777777778899999999999887542111
Q ss_pred C-------CHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CC--CCC
Q 007998 310 P-------DDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SM--GTD 378 (582)
Q Consensus 310 p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--~p~ 378 (582)
| +...|...++.-...|-++....+|+++.. .=..|.... .....+-....++++.+++++- ++ .|+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 1 112344455555567888999999999998 433454322 1222344566789999999875 32 233
Q ss_pred -HHHHHHHHHHHH-hc--CChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 379 -MVLWQTLLGACQ-LY--GDVEMAEIASRKLVEMGSNNC--GDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 379 -~~~~~~ll~~~~-~~--g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
...|++.+.-+. +. ..++.|..+|+++++.-|+.. ..|...+..-.+-|....|..++++.-
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 457888876553 22 378999999999999877432 244455555556788888888888753
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.88 E-value=5.8e-06 Score=85.08 Aligned_cols=68 Identities=10% Similarity=-0.035 Sum_probs=32.5
Q ss_pred HHcCCCchHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 007998 83 LAHSSKPTNAVLWYRQMLRGSHRSDAL-TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY 153 (582)
Q Consensus 83 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 153 (582)
+...|++++|++.+..-... -+|.. ........+.+.|+.++|..++..+++.++ .|..-|..|..+.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEAL 82 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 34555666666655543322 22332 333444555555666666666666655542 2333344444443
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.87 E-value=1.9e-05 Score=79.62 Aligned_cols=387 Identities=12% Similarity=0.071 Sum_probs=249.9
Q ss_pred HHHhcCCC----CCHHHHHHHHhcCCC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 007998 48 EFYALSPL----NELAYAHALFRQINA-PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122 (582)
Q Consensus 48 ~li~~y~~----g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 122 (582)
.++..|-. ..+.-+.+++..-|+ ++..+ ...-.+...|+-++|.+..+.-.+..++ +.+.|..+.-.+....
T Consensus 13 ~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslA--mkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 13 RALKCYETKQYKKGLKLIKQILKKFPEHGESLA--MKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhCCccchhHH--hccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhh
Confidence 45555554 344555555554442 33332 2222344568889999888877765443 5566666666666778
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHH
Q 007998 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKR 199 (582)
Q Consensus 123 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 199 (582)
++++|.+.|..+++.+ +.|..++.-|.-.-++.|+++.....-.+.. ...-..|..+..++.-.|++..|..+.++
T Consensus 90 ~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886 4467788777777777888877666555443 33567899999999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHH------HHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-
Q 007998 200 MKMEGVFKPNEVTVLGALA------ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK- 272 (582)
Q Consensus 200 m~~~g~~~pd~~t~~~ll~------a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~- 272 (582)
..+.....|+...|.-... .....|..+.|.+........ +......-..-.+.+.+.+++++|..++..+.
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 8876522577666544433 345667777777766554433 22234444566788999999999999999876
Q ss_pred CCCCHHHHHHHH-HHHHhCCChhHHH-HHHHHHHhcCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHhHcCCccChhh
Q 007998 273 CRKSLVTWNTMV-MAFAVHGDGPRAL-ELFEQMGRAGVKPDDVSYLA-ALCACNHAGLVDDGVRLFNSMANCGVKPNMKH 349 (582)
Q Consensus 273 ~~~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 349 (582)
..||...|.-.. .++..-.+.-+++ .+|....+. .|-...-.. -++......-.+....++..+.+.|+++-..
T Consensus 248 rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~- 324 (700)
T KOG1156|consen 248 RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK- 324 (700)
T ss_pred hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh-
Confidence 356666665544 4443333333444 666665543 222211111 1111222233444556667777777665332
Q ss_pred HHhhhhHHhhcCCHH---H-HHHHHHhC-C------------CCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998 350 YGSVVDLLGRAGRLQ---E-ACDIVKSV-S------------MGTDMVLWQT--LLGACQLYGDVEMAEIASRKLVEMGS 410 (582)
Q Consensus 350 ~~~li~~~~~~g~~~---~-A~~~~~~~-~------------~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~p 410 (582)
.+...|-.-...+ + +..+...+ + ..|....|.. ++..+-..|+++.|+...+.++...|
T Consensus 325 --dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP 402 (700)
T KOG1156|consen 325 --DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP 402 (700)
T ss_pred --hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc
Confidence 3333332211111 1 11222222 1 2467777765 45667889999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 411 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
.-+..|..-+.++...|..++|...+++.++.+.
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 8888899999999999999999999999887654
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=3.7e-08 Score=94.17 Aligned_cols=244 Identities=13% Similarity=0.039 Sum_probs=132.1
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007998 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263 (582)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 263 (582)
+.-.|++..++.-.+ ...... +.+......+.+++..+|+.+.+ ..++.+.. .|.......+...+...++-+.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~-~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSP-ENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTC-HHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhh-ccCCCc-hhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 344566666665444 211111 11223444455566666654432 22232222 4444444444443333334444
Q ss_pred HHHHHhcccCCC---CHHHHHH-HHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 007998 264 AFEVFDNIKCRK---SLVTWNT-MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339 (582)
Q Consensus 264 A~~~~~~~~~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 339 (582)
+..-++.....+ +..++.. ....+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444443322011 1112222 223345567777777766542 244555566677777778888887777776
Q ss_pred HcCCccChhh---HHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998 340 NCGVKPNMKH---YGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414 (582)
Q Consensus 340 ~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 414 (582)
+. ..|... ..+.+..+.-.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.
T Consensus 159 ~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 159 QI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp CC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred hc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 52 233221 222333333344678888888877 33457777788888888888888888888888888888888
Q ss_pred hHHHHHHHHHhcCCc-hHHHHHHHHHHh
Q 007998 415 DFVLLSNLYAAYERW-DDVGRVRKAMKN 441 (582)
Q Consensus 415 ~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 441 (582)
+...++.+....|+. +.+.+.+..++.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888888888888877 556667776664
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.86 E-value=1.5e-06 Score=76.61 Aligned_cols=200 Identities=13% Similarity=-0.003 Sum_probs=95.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007998 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256 (582)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 256 (582)
..-|.-+|.+.|++..|.+-+++.++.. +.+..++..+...|.+.|..+.|.+.|+..++..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---------------- 99 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---------------- 99 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC----------------
Confidence 3344445555555555555555555543 3344445555555555555555555555544443
Q ss_pred hcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHH
Q 007998 257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLF 335 (582)
Q Consensus 257 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 335 (582)
+.+-...|....-++..|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|..+|
T Consensus 100 -----------------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 100 -----------------PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred -----------------CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 22333444444444444445555555544444221111 124444444444555555555555
Q ss_pred HHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 336 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
++..+.. +-.......+.+.....|++-.|..+++.. ...++..+..-.|..-...||-+.+-+.=.++.+.-|..
T Consensus 163 ~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 163 KRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 5555421 111223334445555555555555555544 223455555555555555666666555555555555543
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=7.9e-08 Score=95.15 Aligned_cols=217 Identities=12% Similarity=0.053 Sum_probs=145.1
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHH
Q 007998 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALEL 299 (582)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 299 (582)
+.|++.+|.-.|+..++..+. +...|--|.......++-..|+..+.+.. .+.|....-+|...|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 445555555555555554322 45555555555555555555555554432 133444555555555555655566665
Q ss_pred HHHHHhcCCC--------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHH
Q 007998 300 FEQMGRAGVK--------PDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370 (582)
Q Consensus 300 ~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 370 (582)
++.-+....+ ++..+-.. ..+.....+....++|-.+.. .+..+|..++.+|.-+|.-.|.+++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 5554432100 00000000 111112223344556666665 665688888899999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 371 KSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 371 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
+.. .++| |...||-|...+....+.++|+..|++++++.|.-..+...|+..|...|.+++|.+.|-....
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 986 7777 7899999999999999999999999999999999999999999999999999999998876653
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=1.9e-05 Score=79.36 Aligned_cols=197 Identities=14% Similarity=0.007 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHhCCC-CCChhHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHH--
Q 007998 73 TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCS-FALKACARVLALFETLQIHSHVLRHGFLADALLGTT-- 148 (582)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-- 148 (582)
...|..+...+...|+++.+...+....+... .++..... .....+...|++++|.+.++.+++.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 34566666667677777777666666554322 22222121 11223456788888888888887764 334333331
Q ss_pred -HHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 007998 149 -LLDVYAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224 (582)
Q Consensus 149 -li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~ 224 (582)
........+..+.+.+.++..... ....+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcC
Confidence 222222345555555555543222 22333445566777888888888888877764 455566667777777777
Q ss_pred CcHHHHHHHHHHHHcCCC-Cch--hHHHHHHHHHHhcCCHHHHHHHHhccc
Q 007998 225 AWKEGDKIHEYIREERLD-MNV--VVCNAVIDMYAKCGLLDKAFEVFDNIK 272 (582)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~ 272 (582)
++++|...+++..+.... ++. ..+..+...+...|++++|..+|++..
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 777777777776654321 222 234456667777777777777777653
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=1e-05 Score=75.25 Aligned_cols=311 Identities=14% Similarity=0.095 Sum_probs=154.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCchHH-HHHHHHHH
Q 007998 78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA---LKACARVLALFETLQIHSHVLRHGFLADALL-GTTLLDVY 153 (582)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y 153 (582)
.+...+.-+|++.+|+.-|....+. |+..|..+ ...|...|+...|.+=+..+++. .||-.. ...-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 3444455556666666666666442 22223332 33455566666666666666554 333211 11122445
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHH
Q 007998 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233 (582)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 233 (582)
.+.|.++.|..=|+.+...+.. +|...+|.+-+....+. ......+..+...|+...+....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e~-------~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQEH-------WVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHHH-------HHHHHHHHHHhcCCchhhHHHHH
Confidence 5666666666666655322110 00000110000000000 01111222223334444444444
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC
Q 007998 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311 (582)
Q Consensus 234 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 311 (582)
..+++.. +-|...+..-..+|...|++..|+.-+.... ...+..+.--+-..+...|+.+.++...++-++ +.||
T Consensus 179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd 255 (504)
T KOG0624|consen 179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD 255 (504)
T ss_pred HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence 4444432 2244444444455555555555544333222 133344444444444455555555555554443 3444
Q ss_pred HHH----HHHH---------HHHHHcCCCHHHHHHHHHHHhHcCCcc---ChhhHHhhhhHHhhcCCHHHHHHHHHhC-C
Q 007998 312 DVS----YLAA---------LCACNHAGLVDDGVRLFNSMANCGVKP---NMKHYGSVVDLLGRAGRLQEACDIVKSV-S 374 (582)
Q Consensus 312 ~~t----~~~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 374 (582)
... |-.+ +......++|.++..-.+...+..... ....+..+-.+|...|++.+|+....+. .
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 421 1100 112234566666666666666633221 1233445566777788888988887765 5
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 375 MGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 375 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
+.|| +.++..-..+|.....++.|+.-|+++.+.++++..+
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 5664 7788888888888888999999999999988877543
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=4.9e-06 Score=85.62 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=84.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 007998 317 AALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYG 393 (582)
Q Consensus 317 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 393 (582)
.+...|.+.|++++|..+.++.+++ .|+ ++.|..-...|-+.|++++|.+.++.. ...+ |...-+-....+.+.|
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 3344455566666666666666553 233 455555556666666666666665554 2222 3333334444555666
Q ss_pred ChHHHHHHHHHHHHcC--CCC-------chhHHHHHHHHHhcCCchHHHHHHHHHHhC--CCccCC--cccEEEECCEEE
Q 007998 394 DVEMAEIASRKLVEMG--SNN-------CGDFVLLSNLYAAYERWDDVGRVRKAMKNR--DVKKVP--GFSYIEVGGVIH 460 (582)
Q Consensus 394 ~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~--~~s~~~~~~~~~ 460 (582)
++++|.+++....+.+ |.. .-.....+.+|.+.|++..|++-|..+.+. .+..+. -.+|..-.+.+.
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r 356 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLR 356 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHH
Confidence 6666666665554433 110 111234566677777766666655444321 010000 001110000000
Q ss_pred EE------EeCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 007998 461 KF------FTSDKSHVKWREIYEKLDEIMFKIKEYGY 491 (582)
Q Consensus 461 ~~------~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 491 (582)
.+ --...+||..-.+....-++.-.+.+.+.
T Consensus 357 ~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~ 393 (517)
T PF12569_consen 357 AYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPE 393 (517)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcc
Confidence 00 01125678877777777677767666543
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.76 E-value=1.7e-05 Score=90.28 Aligned_cols=323 Identities=13% Similarity=0.009 Sum_probs=206.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CC----C--h--hHHHHHHHHHHhC
Q 007998 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG----VR----D--I--ASWNALIAGLAQG 187 (582)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~----~--~--~~~~~li~~~~~~ 187 (582)
..|+++.+...++.+.......++.........+...|++++|...+.... .. + . .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 446666555555443111111122333445556678899999888887542 11 1 1 1122233456689
Q ss_pred CChhHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCCcHHHHHHHHHHHHcCC---CC--chhHHHHHHHHHHhc
Q 007998 188 NLASEAVDLFKRMKMEGVFKPNE----VTVLGALAACGHLGAWKEGDKIHEYIREERL---DM--NVVVCNAVIDMYAKC 258 (582)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~y~~~ 258 (582)
|++++|...+++....-. ..+. .+...+...+...|++++|...+.+.....- .+ .......+...+...
T Consensus 466 g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 466 GDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 999999999998876421 2222 2345556667789999999999988774311 11 134556677788899
Q ss_pred CCHHHHHHHHhccc------CCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHhc--CCCCC--HHHHHHHHHHHHc
Q 007998 259 GLLDKAFEVFDNIK------CRK----SLVTWNTMVMAFAVHGDGPRALELFEQMGRA--GVKPD--DVSYLAALCACNH 324 (582)
Q Consensus 259 g~~~~A~~~~~~~~------~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~ 324 (582)
|++++|...+++.. ..+ ....+..+...+...|++++|...+++.... ...|. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999887643 011 1233455666677789999999999887552 11222 2344445667778
Q ss_pred CCCHHHHHHHHHHHhHc-CCccChhhH-----HhhhhHHhhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHhc
Q 007998 325 AGLVDDGVRLFNSMANC-GVKPNMKHY-----GSVVDLLGRAGRLQEACDIVKSVSM-G-TDM----VLWQTLLGACQLY 392 (582)
Q Consensus 325 ~g~~~~a~~~~~~~~~~-~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~ll~~~~~~ 392 (582)
.|+.+.|...+...... .-......+ ......+...|+.+.|.+.+..... . ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 99999999999888651 111111111 1122445568999999999876621 1 111 1234566778889
Q ss_pred CChHHHHHHHHHHHHcCC------CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 393 GDVEMAEIASRKLVEMGS------NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 393 g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
|+.++|...++++..... ....++..++.+|...|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999887531 123467788999999999999999999887643
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=3.1e-05 Score=81.54 Aligned_cols=370 Identities=11% Similarity=0.096 Sum_probs=203.7
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC-CCChhH-----HHHHHHHHHcCCCchH
Q 007998 19 HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN-APSTND-----FNAVLRGLAHSSKPTN 91 (582)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~-~~~~~~-----~~~li~~~~~~g~~~~ 91 (582)
...-||+..+++.+++....+|.-. ..-+.++.. +-..+-.++++++. .+++++ -|.||-...+ .+...
T Consensus 963 n~~rRqLiDqVv~tal~E~~dPe~v---S~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~tr 1038 (1666)
T KOG0985|consen 963 NPYRRQLIDQVVQTALPETQDPEEV---SVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTR 1038 (1666)
T ss_pred ChHHHHHHHHHHHhcCCccCChHHH---HHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHH
Confidence 3455666777777666433224332 245555555 66666666666654 333332 2333332222 23445
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007998 92 AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171 (582)
Q Consensus 92 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 171 (582)
.++..+++-..+ -..+...+...+-+++|..+|... ..+....+.||. .-+.++.|.+.-++..+
T Consensus 1039 Vm~YI~rLdnyD-------a~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~ 1103 (1666)
T KOG0985|consen 1039 VMEYINRLDNYD-------APDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE 1103 (1666)
T ss_pred HHHHHHHhccCC-------chhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC
Confidence 555555553321 112233344445556666665542 233333344433 34566777766666555
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251 (582)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 251 (582)
| ..|..+..+-.+.|...+|++-|-+. .|+..|..++.++.+.|.+++-.+++.-..+..-+|. +-+.|
T Consensus 1104 p--~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eL 1172 (1666)
T KOG0985|consen 1104 P--AVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSEL 1172 (1666)
T ss_pred h--HHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHH
Confidence 4 56888888888999999988877433 4667888999999999999998888877776655544 34578
Q ss_pred HHHHHhcCCHHHHHHHHhcccCCCCHHH--------------------------HHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVT--------------------------WNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 252 i~~y~~~g~~~~A~~~~~~~~~~~~~~~--------------------------~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
+-+|++.+++.+-++++. -||+.- |..|...+...|++..|...-++.
T Consensus 1173 i~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA-- 1246 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA-- 1246 (1666)
T ss_pred HHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence 888999998888776653 233333 444444444445554444433332
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 007998 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQ 383 (582)
Q Consensus 306 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 383 (582)
.+..||..+-.+|...+.+..| +|...++.....-..-|+.-|-..|.+++-..+++.. +.+. ....|.
T Consensus 1247 ----ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfT 1317 (1666)
T KOG0985|consen 1247 ----NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFT 1317 (1666)
T ss_pred ----cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHH
Confidence 2344565555566554444322 1222222233444555667777777777777777654 4332 444555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439 (582)
Q Consensus 384 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 439 (582)
-|.-.|.+. ++++..+.++-....- ..--++.++..+--|.+..-++.+-
T Consensus 1318 ELaiLYsky-kp~km~EHl~LFwsRv-----NipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1318 ELAILYSKY-KPEKMMEHLKLFWSRV-----NIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555554 3444444443332211 1113455555556666665555443
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=8.7e-06 Score=74.27 Aligned_cols=379 Identities=12% Similarity=0.025 Sum_probs=233.8
Q ss_pred HHHhcCCC-CCHHHHHHHHhcCCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHH-HHHHHHhcC
Q 007998 48 EFYALSPL-NELAYAHALFRQINA---PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF-ALKACARVL 122 (582)
Q Consensus 48 ~li~~y~~-g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~ 122 (582)
+.+.-+.+ .++++|.+++..-.+ ++....+.|...|-...++..|-..++++-.. .|...-|.. -.+.+-+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 44444456 788999988876543 36667788888889999999999999999764 344333322 123445667
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHH----HHHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHhCCChhHHHHHH
Q 007998 123 ALFETLQIHSHVLRHGFLADALLGTTLL----DVYAKVGEIVSAKKVFDEMG-VRDIASWNALIAGLAQGNLASEAVDLF 197 (582)
Q Consensus 123 ~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~y~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 197 (582)
.+..|..+...|... ....+..+ ......+|+..++.+.++.+ +.+..+.+.......+.|+++.|++-|
T Consensus 93 i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred ccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 788888887776432 12222222 22335789999999999998 466777777777778999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC-------------ch---------------hHHH
Q 007998 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM-------------NV---------------VVCN 249 (582)
Q Consensus 198 ~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~ 249 (582)
+...+-+- -.....|+..+.. .+.++...|.+...++++.|+.. |+ ..+|
T Consensus 168 qaAlqvsG-yqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSG-YQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcC-CCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 99887654 3345667665544 46789999999999999876431 11 1222
Q ss_pred HHHHHHHhcCCHHHHHHHHhccc----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 007998 250 AVIDMYAKCGLLDKAFEVFDNIK----CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325 (582)
Q Consensus 250 ~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 325 (582)
.-...+.+.|+++.|.+.+-.|+ .+.|++|...+.-.- ..+++.+..+-+.-+..... --..||..++-.|++.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 23345678899999999999997 234667765553322 24455555555555554422 2346888888899998
Q ss_pred CCHHHHHHHHHHHhHcCCc-cChhhHHhhhhHHh-hcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC---hHHH
Q 007998 326 GLVDDGVRLFNSMANCGVK-PNMKHYGSVVDLLG-RAGRLQEACDIVKSVSMGTD--MVLWQTLLGACQLYGD---VEMA 398 (582)
Q Consensus 326 g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~---~~~a 398 (582)
.-++.|-.++.+-...-.. .+...|+ |++++. ..-..++|++-++.+...-. ......-+.--+..++ ...+
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 8888888877543321111 2333444 333333 33456666665554310000 0000000111111111 1223
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
.+-+++.+++- ..+.+.-+..|.+..++..+.++|..-.+
T Consensus 403 i~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 403 VNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 33344444432 23556777888899999999999876554
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.73 E-value=6.7e-06 Score=86.47 Aligned_cols=410 Identities=12% Similarity=0.048 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHH
Q 007998 21 HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWY 96 (582)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 96 (582)
....+|..+....+ | +..+..|..|...|.. -++..|.+.|+..- ..|..+|......|++..+++.|..+.
T Consensus 474 ~~~al~ali~alrl--d--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALRL--D--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHhc--c--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34455655544443 3 4444456788888877 88889999998865 357778999999999999999999883
Q ss_pred HHHHhCC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 007998 97 RQMLRGS-HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175 (582)
Q Consensus 97 ~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~ 175 (582)
-..-+.. ...-...|..+--.+...++...+..-++..++.. +.|...|..|..+|.++|+...|.++|++...-++.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 3322211 11112234444445667788889999899888876 448889999999999999999999999888654443
Q ss_pred HHHH---HHHHHHhCCChhHHHHHHHHHHHcC------CCCCCHHHHHHHHHHHhccCCcHHHHHHHHH-------HHHc
Q 007998 176 SWNA---LIAGLAQGNLASEAVDLFKRMKMEG------VFKPNEVTVLGALAACGHLGAWKEGDKIHEY-------IREE 239 (582)
Q Consensus 176 ~~~~---li~~~~~~g~~~~A~~~~~~m~~~g------~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~-------~~~~ 239 (582)
+|.. ....-+..|.+++|+..+....... . .--..++..+...+...|-...+..+++. ....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q-~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQ-NGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3322 1223456788999888887765421 1 11122333333333333322222222222 2111
Q ss_pred CCCCchhHHHHH-------------------HHHHHh----cCCH---H---HHHHHHhc-ccCCCCHHHHHHHHHHHHh
Q 007998 240 RLDMNVVVCNAV-------------------IDMYAK----CGLL---D---KAFEVFDN-IKCRKSLVTWNTMVMAFAV 289 (582)
Q Consensus 240 ~~~~~~~~~~~l-------------------i~~y~~----~g~~---~---~A~~~~~~-~~~~~~~~~~~~li~~~~~ 289 (582)
....+...|-.+ +..+.+ .+.. + -+.+.+-. +....+..+|..++..|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 111111111111 111111 1111 1 00000000 0001123445555444433
Q ss_pred ----C----CChhHHHHHHHHHHhcCCCCCHHHHHH---------------------------------HHHHHHcCCCH
Q 007998 290 ----H----GDGPRALELFEQMGRAGVKPDDVSYLA---------------------------------ALCACNHAGLV 328 (582)
Q Consensus 290 ----~----g~~~~A~~~~~~m~~~g~~p~~~t~~~---------------------------------ll~a~~~~g~~ 328 (582)
. .+...|+..+.+.++.. .-+..+|+. +.-.|....++
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccH
Confidence 1 12234555555544321 112333333 33334445666
Q ss_pred HHHHHHHHHHhHcCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007998 329 DDGVRLFNSMANCGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-------SMGTDMVLWQTLLGACQLYGDVEMAEI 400 (582)
Q Consensus 329 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~ 400 (582)
+.|...|..... +.| +...|-.........|+.-++..+|..- +--|+...|.....-...+|+.++-+.
T Consensus 867 E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 867 EHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred HHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 667666666654 223 3344443333444566666776666531 223455566555555556666655444
Q ss_pred H----------HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998 401 A----------SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439 (582)
Q Consensus 401 ~----------~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 439 (582)
. .++.....|+...+|...+....+.+.+.+|.....+.
T Consensus 945 t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4 44445567888899999999999999988888776654
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=5.9e-05 Score=85.95 Aligned_cols=356 Identities=8% Similarity=-0.076 Sum_probs=219.7
Q ss_pred CCHHHHHHHHhcCCCCChhH--HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 007998 56 NELAYAHALFRQINAPSTND--FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH 133 (582)
Q Consensus 56 g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 133 (582)
|++.+|..........+... ...........|++..+...+..+.......+..........+...|+++++...+..
T Consensus 355 g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~ 434 (903)
T PRK04841 355 GFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLAR 434 (903)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555555444332211 1112223445677777777766653221111222233344455677899999998887
Q ss_pred HHHcCC------CCc--hHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCh----hHHHHHHHHHHhCCChhHHHHHH
Q 007998 134 VLRHGF------LAD--ALLGTTLLDVYAKVGEIVSAKKVFDEMGV----RDI----ASWNALIAGLAQGNLASEAVDLF 197 (582)
Q Consensus 134 ~~~~g~------~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~~ 197 (582)
+...-- .+. ......+...+...|++++|...+++... .+. ..++.+...+...|++++|...+
T Consensus 435 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~ 514 (903)
T PRK04841 435 AEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMM 514 (903)
T ss_pred HHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 765311 111 12223344566789999999998877532 222 34566777788899999999999
Q ss_pred HHHHHcCCC--CCC--HHHHHHHHHHHhccCCcHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHH
Q 007998 198 KRMKMEGVF--KPN--EVTVLGALAACGHLGAWKEGDKIHEYIREE----RLD--M-NVVVCNAVIDMYAKCGLLDKAFE 266 (582)
Q Consensus 198 ~~m~~~g~~--~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~y~~~g~~~~A~~ 266 (582)
.+.....-- .+. ..++..+...+...|+++.|...+++..+. +.. + ....+..+...+...|++++|..
T Consensus 515 ~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 594 (903)
T PRK04841 515 QQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ 594 (903)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 887643110 111 234555667788899999999998887652 221 1 23345566677888899999999
Q ss_pred HHhccc-----CCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC--CCCC--HHHH--HHHHHHHHcCCCHHHHHH
Q 007998 267 VFDNIK-----CRK--SLVTWNTMVMAFAVHGDGPRALELFEQMGRAG--VKPD--DVSY--LAALCACNHAGLVDDGVR 333 (582)
Q Consensus 267 ~~~~~~-----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~--~~ll~a~~~~g~~~~a~~ 333 (582)
.+++.. ..+ ....+..+...+...|++++|...+.+..... ..+. .... ...+..+...|+.+.|..
T Consensus 595 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 674 (903)
T PRK04841 595 CARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAAN 674 (903)
T ss_pred HHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHH
Confidence 888653 011 13345556677889999999999998875421 1111 1011 112234455889999999
Q ss_pred HHHHHhHcCCccC---hhhHHhhhhHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 007998 334 LFNSMANCGVKPN---MKHYGSVVDLLGRAGRLQEACDIVKSV-------SMGT-DMVLWQTLLGACQLYGDVEMAEIAS 402 (582)
Q Consensus 334 ~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 402 (582)
.+........... ...+..+..++...|++++|...+++. +..+ ...+...+..++...|+.++|...+
T Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L 754 (903)
T PRK04841 675 WLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVL 754 (903)
T ss_pred HHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8877654211111 111345667788999999999888765 2222 2345666677889999999999999
Q ss_pred HHHHHcCCC
Q 007998 403 RKLVEMGSN 411 (582)
Q Consensus 403 ~~~~~~~p~ 411 (582)
++++++...
T Consensus 755 ~~Al~la~~ 763 (903)
T PRK04841 755 LEALKLANR 763 (903)
T ss_pred HHHHHHhCc
Confidence 999997643
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.70 E-value=0.00012 Score=68.29 Aligned_cols=295 Identities=9% Similarity=0.022 Sum_probs=194.5
Q ss_pred CCCHHHHHHHHhcCCCCChhHHHHHH---HHHHcCCCchHHHHHHHHHHhCCCCCChhHHH-HHHHHHHhcCChHHHHHH
Q 007998 55 LNELAYAHALFRQINAPSTNDFNAVL---RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS-FALKACARVLALFETLQI 130 (582)
Q Consensus 55 ~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~ 130 (582)
+|.+.+|+.-|....+-|+..|.++- ..|...|+...|+.=|.+.++ .+||-..-. .-...+.+.|.+++|.+=
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~D 128 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEAD 128 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHHH
Confidence 38999999999888877777777665 578888999999999999887 577743211 122356789999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCH
Q 007998 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE 210 (582)
Q Consensus 131 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~ 210 (582)
|+.++..... .. ....++.+.-..++-+.+ ...+..+.-+|+...|++....+++.. +.|.
T Consensus 129 F~~vl~~~~s--~~---~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda 189 (504)
T KOG0624|consen 129 FDQVLQHEPS--NG---LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLEIQ--PWDA 189 (504)
T ss_pred HHHHHhcCCC--cc---hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHhcC--cchh
Confidence 9999987532 11 111222222222222222 123444556777777777777777664 5677
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHH----HHHHH--
Q 007998 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLV----TWNTM-- 283 (582)
Q Consensus 211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~----~~~~l-- 283 (582)
..+..-..+|...|.+..|..=+..+-+..-+ ++....-+-..+.+.|+.+.++...++.. ..||.. .|..+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence 77777777777777777776666665554433 44555556666777777777777666543 234322 12111
Q ss_pred -------HHHHHhCCChhHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHh
Q 007998 284 -------VMAFAVHGDGPRALELFEQMGRAGVKPDDVS---YLAALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGS 352 (582)
Q Consensus 284 -------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ 352 (582)
+......+++.++++-.+...+.......++ +..+-.++...+++.+|++.-.++.. +.|+ +.++.-
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~d 346 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 1234557788888888888776532212233 33344566678899999999988886 4455 778877
Q ss_pred hhhHHhhcCCHHHHHHHHHhC
Q 007998 353 VVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 353 li~~~~~~g~~~~A~~~~~~~ 373 (582)
-.++|.-...+++|..-|+..
T Consensus 347 RAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 788999999999999988876
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.69 E-value=0.00016 Score=74.63 Aligned_cols=383 Identities=13% Similarity=0.045 Sum_probs=233.3
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC--C--CChhHHHHHH-HHHH-cCCCchH
Q 007998 19 HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN--A--PSTNDFNAVL-RGLA-HSSKPTN 91 (582)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~--~--~~~~~~~~li-~~~~-~~g~~~~ 91 (582)
+..+-..+++....-+... -.|+.+-..|.- |.-..|..+++.-. . |+..+--.|+ ..|. +.+..++
T Consensus 339 f~~lae~fE~~~~~~~~~~------e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee 412 (799)
T KOG4162|consen 339 FEVLAEQFEQALPFSFGEH------ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE 412 (799)
T ss_pred HHHHHHHHHHHhHhhhhhH------HHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence 5666666666655444332 224667777777 88888888887643 2 4333333333 3343 3467777
Q ss_pred HHHHHHHHHhC--CC--CCChhHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 007998 92 AVLWYRQMLRG--SH--RSDALTCSFALKACARV-----------LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV 156 (582)
Q Consensus 92 A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 156 (582)
+++.-.+.... +. ...+..|..+.-+|... ....++.+.++..++.+.. |+.+.--+.--|+..
T Consensus 413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQ 491 (799)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHH
Confidence 77776666551 11 11222333333333211 1234567778888777643 333333355568888
Q ss_pred CCHHHHHHHHhhc----CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHH
Q 007998 157 GEIVSAKKVFDEM----GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI 232 (582)
Q Consensus 157 g~~~~A~~~f~~m----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~ 232 (582)
++++.|.....+. ..-+...|.-+.-.+.-.+++.+|+.+.+.....- +.|-.....-+..-...++.+++...
T Consensus 492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhhhhhcccHHHHHHH
Confidence 9999998877665 34478899999999999999999999998876652 22222111122222223444444433
Q ss_pred HHHHHHc---------------------CCC-------CchhHHHHHHHHHHhcC---CHHHHHHHHhcccCCCC-----
Q 007998 233 HEYIREE---------------------RLD-------MNVVVCNAVIDMYAKCG---LLDKAFEVFDNIKCRKS----- 276 (582)
Q Consensus 233 ~~~~~~~---------------------~~~-------~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~~~~----- 276 (582)
...++.. |.. ....++.-+.......+ ..+.....+...+ .|+
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~-~~~~~~~~ 648 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP-GPDSLWYL 648 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC-CCCchHHH
Confidence 3322210 110 01122222211111111 1111112222222 333
Q ss_pred -HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhh
Q 007998 277 -LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVV 354 (582)
Q Consensus 277 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li 354 (582)
...|......+...+..++|...+.+.... ..-....|......+...|.+++|.+.|..... +.| ++....++.
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHH
Confidence 234666777888899999998888777653 222344566666677788999999999988886 345 456778899
Q ss_pred hHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998 355 DLLGRAGRLQEACD--IVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414 (582)
Q Consensus 355 ~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 414 (582)
.++.+.|+..-|.. ++..+ .+.| +...|..+...+.+.|+.+.|.+.|.-..++++.+|.
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999998777777 77776 6666 7899999999999999999999999999999876653
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.69 E-value=7.7e-06 Score=83.07 Aligned_cols=190 Identities=19% Similarity=0.290 Sum_probs=87.7
Q ss_pred HhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 007998 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299 (582)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 299 (582)
......+.+|..+++.+.+... -..-|..+.+-|+..|+++.|+++|-+.. .++--|..|.+.|++++|.++
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc------hhHHHHHHHhccccHHHHHHH
Confidence 3344455555555555444321 12233445555555666666666554443 123334555556666655555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCH
Q 007998 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM 379 (582)
Q Consensus 300 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 379 (582)
-.+.. |.......|..-..-.-..|++.+|+++|-.+. .|+. -|.+|-+.|..++.+++.++-.-..-.
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~ 882 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLH 882 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhh
Confidence 44432 112222333333333444555555555443322 2332 244555555555555555544111112
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 007998 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVR 436 (582)
Q Consensus 380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 436 (582)
.+...+..-+-..|++..|++.|-++ .-+..-.++|...+.|++|.++-
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHH
Confidence 23334444445555555555554433 23344455555555555555543
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=2.7e-05 Score=80.27 Aligned_cols=350 Identities=12% Similarity=0.085 Sum_probs=218.9
Q ss_pred HHHHh--cCCC-CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhC-C--------CCCChhHHHHH
Q 007998 47 IEFYA--LSPL-NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG-S--------HRSDALTCSFA 114 (582)
Q Consensus 47 ~~li~--~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~~~~~l 114 (582)
.++++ .|.. |+++.|.+-.+.+. +-..|..|.+.|.+..+.+-|.-.+-.|... | -.|+ .+=..+
T Consensus 730 kaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakv 806 (1416)
T KOG3617|consen 730 KAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKV 806 (1416)
T ss_pred HhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHH
Confidence 46665 4555 99999988887775 5678999999999999888887777666431 1 1222 222223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhHHHHHHHHHHhCCChhHH
Q 007998 115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD-IASWNALIAGLAQGNLASEA 193 (582)
Q Consensus 115 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A 193 (582)
.-.....|.+++|+.+|.+-.+.. .|=..|-..|.+++|.++-+.-..-. ..||..-..-+-..++.+.|
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHH
Confidence 333457899999999999877652 23456778899999998865432111 23555556656667888888
Q ss_pred HHHHHHH----------HHcCC--------CCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 194 VDLFKRM----------KMEGV--------FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255 (582)
Q Consensus 194 ~~~~~~m----------~~~g~--------~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 255 (582)
++.|++. +.... ...|...|.-...-.-..|+.+.|..++....+ |-+++...
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 8887754 22210 012333344444444556677777666665543 44566666
Q ss_pred HhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-----------
Q 007998 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH----------- 324 (582)
Q Consensus 256 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----------- 324 (582)
+-.|+.++|-++-++-. |......+...|-..|++.+|...|.+.+. |...|+.|-.
T Consensus 949 C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred eeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHH
Confidence 66788888877766544 666667788889999999999999887643 3333333322
Q ss_pred ----CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHH-HHhC----------CC--CCCHHHHHHHHH
Q 007998 325 ----AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI-VKSV----------SM--GTDMVLWQTLLG 387 (582)
Q Consensus 325 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~----------~~--~p~~~~~~~ll~ 387 (582)
..+.-.|-++|++.-- . ...-+..|-++|.+.+|+++ |+.- .+ ..|+...+--..
T Consensus 1017 l~s~~~d~v~aArYyEe~g~---~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELGG---Y-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred hhcCchhHHHHHHHHHHcch---h-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 2334444555544321 1 12245678889999888876 2211 12 236666666666
Q ss_pred HHHhcCChHHHHHHHHHHHHc----------------------CCC---------CchhHHHHHHHHHhcCCchHHHHHH
Q 007998 388 ACQLYGDVEMAEIASRKLVEM----------------------GSN---------NCGDFVLLSNLYAAYERWDDVGRVR 436 (582)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~~~~----------------------~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~ 436 (582)
-+..+.++++|..++-...+. .|. .......++..|.++|.+..|.+-|
T Consensus 1089 FF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 667777788777665443221 121 0235667889999999888776654
Q ss_pred H
Q 007998 437 K 437 (582)
Q Consensus 437 ~ 437 (582)
.
T Consensus 1169 T 1169 (1416)
T KOG3617|consen 1169 T 1169 (1416)
T ss_pred h
Confidence 3
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.67 E-value=1.6e-06 Score=83.09 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 007998 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDV-EMAEIASRK 404 (582)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~ 404 (582)
+.+|..+|+++.. ...++..+.+.+.-+....|++++|.+++++. ...| |+.++..++......|+. +.+.+.+.+
T Consensus 183 ~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3444444444333 11233333444444444444444444444432 2222 344444455555555554 445555555
Q ss_pred HHHcCCCC
Q 007998 405 LVEMGSNN 412 (582)
Q Consensus 405 ~~~~~p~~ 412 (582)
+....|..
T Consensus 262 L~~~~p~h 269 (290)
T PF04733_consen 262 LKQSNPNH 269 (290)
T ss_dssp CHHHTTTS
T ss_pred HHHhCCCC
Confidence 55555543
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.61 E-value=3.8e-06 Score=75.89 Aligned_cols=147 Identities=7% Similarity=0.067 Sum_probs=109.6
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHH
Q 007998 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364 (582)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 364 (582)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+.+ +.+...|..|...|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 457777777765444332221 11 01223566677777777777633 456788888888999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998 365 EACDIVKSV-SMGT-DMVLWQTLLGAC-QLYGD--VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439 (582)
Q Consensus 365 ~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 439 (582)
+|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+...|++++|...++++
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998876 4455 677788877764 66676 599999999999999999999999999999999999999999998
Q ss_pred HhCCC
Q 007998 440 KNRDV 444 (582)
Q Consensus 440 ~~~~~ 444 (582)
.+...
T Consensus 171 L~l~~ 175 (198)
T PRK10370 171 LDLNS 175 (198)
T ss_pred HhhCC
Confidence 87544
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=9.1e-06 Score=74.15 Aligned_cols=309 Identities=13% Similarity=0.071 Sum_probs=161.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHH-HHHHH
Q 007998 108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNA-LIAGL 184 (582)
Q Consensus 108 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~ 184 (582)
.--+.+++..+.+..++..+++++..-.+.. +.+..-.+.|..+|....++..|-..++++.. |...-|.. -...+
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 3345666666667777777777777666654 22555666777777777778888777777653 22222211 12445
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH--HhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007998 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA--CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262 (582)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 262 (582)
-+.+.+.+|+.+...|... |+...-..-+.+ .-+.+++..++.+.++....| +..+.+...-...+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 5667777777777666432 221111111111 123344444444444332111 2222333333334445555
Q ss_pred HHHHHHhccc---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHcCCCHHHHHHHH
Q 007998 263 KAFEVFDNIK---CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS----YLAALCACNHAGLVDDGVRLF 335 (582)
Q Consensus 263 ~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~ 335 (582)
.|.+-|+... .-.....||.-+ +..+.|+++.|+++..++++.|++-.... -.-.+++- ..|+. ..+.
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh 236 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLH 236 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHH
Confidence 5555554332 011223333222 22334445555555555544443311100 00000000 00000 0000
Q ss_pred HHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998 336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM----GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411 (582)
Q Consensus 336 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 411 (582)
... -+..+|.-...+.+.|+++.|.+-+-.||- +.|++|...+.-. ...+++..+.+-+.-+++++|-
T Consensus 237 ~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 237 QSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred HHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC
Confidence 000 011222233346688999999999999952 2377777665422 2356677888888888999998
Q ss_pred CchhHHHHHHHHHhcCCchHHHHHHH
Q 007998 412 NCGDFVLLSNLYAAYERWDDVGRVRK 437 (582)
Q Consensus 412 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 437 (582)
.+.++..++-.|++..-++-|..++-
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 88899999999999999999988875
No 101
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=0.00011 Score=68.92 Aligned_cols=214 Identities=13% Similarity=0.057 Sum_probs=113.1
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 007998 80 LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159 (582)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 159 (582)
+.-+..+.++..|+.+++--...+-+-...+-.-+..++-..|++++|...+..+.... .++..++-.|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56666677888888887766543322121222223334457788888888887776643 55566666666666667777
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc
Q 007998 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239 (582)
Q Consensus 160 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 239 (582)
.+|..+-...+. +...-..|...-.+.++-++-+.+-..+... . .--.++.+..-....+.+|..++..++..
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~---~---EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT---L---EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---H---HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777655432 1222223334444556555555444444221 1 12223333333344567777777777664
Q ss_pred CCCCchhHHHH-HHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 240 RLDMNVVVCNA-VIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303 (582)
Q Consensus 240 ~~~~~~~~~~~-li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (582)
+ |+-...|. +.-.|.|..-++-+.++++--. .+.++..-|.......+.=....|..-.+++
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 3 23222222 3345666666666666655322 1334455555555554443333444444443
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=1.6e-05 Score=86.42 Aligned_cols=232 Identities=13% Similarity=0.066 Sum_probs=183.6
Q ss_pred CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC---CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-hhHHH
Q 007998 106 SD-ALTCSFALKACARVLALFETLQIHSHVLRH-GFL---ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-D-IASWN 178 (582)
Q Consensus 106 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~-~~~~~ 178 (582)
|| ...|..-|.-..+.++++.|+++.+++++. ++. --..+|.+++++-...|.-+...++|++..+- | -..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44 446777777788999999999999999874 221 12357889999988899999999999998653 3 35688
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHh
Q 007998 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM-NVVVCNAVIDMYAK 257 (582)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~ 257 (582)
.|...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+..+-+.|..++.++++.-... .+....-.+++-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 99999999999999999999998762 5567789999999999999999999999988763321 35566677888899
Q ss_pred cCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHcCCCHHHHHH
Q 007998 258 CGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD--VSYLAALCACNHAGLVDDGVR 333 (582)
Q Consensus 258 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~ 333 (582)
+|+.+.++.+|+... .++-...|+..|..-.++|+.+.+..+|++....++.|-. ..|...|..=.+.|+-+.++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 999999999999875 3456789999999999999999999999999999888765 356666655555555554444
Q ss_pred HHHHHh
Q 007998 334 LFNSMA 339 (582)
Q Consensus 334 ~~~~~~ 339 (582)
+-.++.
T Consensus 1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred HHHHHH
Confidence 443333
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=5.7e-06 Score=77.70 Aligned_cols=182 Identities=12% Similarity=0.022 Sum_probs=124.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC-H---HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH----H
Q 007998 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS-L---VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD----V 313 (582)
Q Consensus 243 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 313 (582)
.....+..+...|.+.|++++|...|+++. ..|+ . .+|..+..+|...|++++|+..++++.+. .|+. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 346677778888888999999999988764 2232 2 46777888888899999999999998874 3322 1
Q ss_pred HHHHHHHHHHcC--------CCHHHHHHHHHHHhHcCCccChh-hHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 007998 314 SYLAALCACNHA--------GLVDDGVRLFNSMANCGVKPNMK-HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384 (582)
Q Consensus 314 t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 384 (582)
++..+..++.+. |+.+.|.+.|+.+... .|+.. .+..+... +...... ......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 344444455543 6677888888887763 23321 12111110 0000000 011224
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 385 LLGACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 385 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
+...+...|+++.|...++++++..|++ +..+..++.+|...|++++|..+++.+..+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5567889999999999999999987754 4688999999999999999999999887543
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=6.3e-06 Score=89.51 Aligned_cols=197 Identities=13% Similarity=0.115 Sum_probs=153.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccc--C-----CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHH
Q 007998 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--C-----RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSY 315 (582)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 315 (582)
....|-..|......+++++|++++++.. + +.-...|.++++.-...|.-+...++|+++.+. -|. ..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 45667777777888888888888887654 1 112356888888777778778888888888763 233 467
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 007998 316 LAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV----SMGTDMVLWQTLLGACQ 390 (582)
Q Consensus 316 ~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~ 390 (582)
..|...|.+.+..++|.++++.|.+ .+ -....|..+++.+.+.++-++|..++++. |.+.......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 7888888888899999999999988 55 56677888888888888888888888765 32224555566666677
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
++|+.+++..+|+..+...|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8899999999999999999988889999999999999999999999999887765
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=1.1e-07 Score=58.04 Aligned_cols=33 Identities=39% Similarity=0.560 Sum_probs=26.2
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007998 138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170 (582)
Q Consensus 138 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (582)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 106
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00021 Score=71.55 Aligned_cols=340 Identities=17% Similarity=0.103 Sum_probs=200.4
Q ss_pred hcCCC---CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChHH
Q 007998 51 ALSPL---NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFALKACARVLALFE 126 (582)
Q Consensus 51 ~~y~~---g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~ 126 (582)
.+|+- +..++|...++...+-|...-..-...+-+.|++++|+++|+.+.+.+..- |...-..++.+-+.
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~------ 158 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA------ 158 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh------
Confidence 44554 899999999986655555566666677889999999999999998765321 11122222222111
Q ss_pred HHHHHHHHHHcCCCC--ch-HHHHHHHHHHHhcCCHHHHHHHHhhc--------CCCC-----hh-----HHHHHHHHHH
Q 007998 127 TLQIHSHVLRHGFLA--DA-LLGTTLLDVYAKVGEIVSAKKVFDEM--------GVRD-----IA-----SWNALIAGLA 185 (582)
Q Consensus 127 a~~~~~~~~~~g~~~--~~-~~~~~li~~y~~~g~~~~A~~~f~~m--------~~~~-----~~-----~~~~li~~~~ 185 (582)
.+. +.+......| +- ..|| ....+...|++.+|+++++.. ...| .. .---|.-.+.
T Consensus 159 -l~~-~~~q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 159 -LQV-QLLQSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred -hhH-HHHHhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 111 0111111122 11 2333 455677889999999998876 1111 11 1223445567
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCCHHHHHHHH---HHHhccCCcHH--HHHHHHH------------H------------
Q 007998 186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL---AACGHLGAWKE--GDKIHEY------------I------------ 236 (582)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll---~a~~~~~~~~~--a~~~~~~------------~------------ 236 (582)
..|+-++|.+++...++.. ++|........ .+...-.++-. ....++. +
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HhcchHHHHHHHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998876 56653322222 12221111111 0000000 0
Q ss_pred -----------------HHc-CCCCchhHHHHHHHHHHhcC--CHHHHHHHHhccc-C--CCCHHHHHHHHHHHHhCCCh
Q 007998 237 -----------------REE-RLDMNVVVCNAVIDMYAKCG--LLDKAFEVFDNIK-C--RKSLVTWNTMVMAFAVHGDG 293 (582)
Q Consensus 237 -----------------~~~-~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~-~--~~~~~~~~~li~~~~~~g~~ 293 (582)
... +..|. ..+.+++....++. ....|.+++.... . ....+.--.++......|++
T Consensus 314 ~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 314 ALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 000 22222 33344444333322 3556666665543 1 22345666677788899999
Q ss_pred hHHHHHHH--------HHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH--cCCccChhhHH----hhhhHHhh
Q 007998 294 PRALELFE--------QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPNMKHYG----SVVDLLGR 359 (582)
Q Consensus 294 ~~A~~~~~--------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~----~li~~~~~ 359 (582)
+.|++++. ...+.+..|-.+ ..+...+.+.++.+.|..++.+... ..-.+...... -++..-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99999999 555555566544 4466667788888888888888776 22223333333 33444457
Q ss_pred cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998 360 AGRLQEACDIVKSV-S-MGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405 (582)
Q Consensus 360 ~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 405 (582)
.|+-++|..+++++ . ..+|..+...++.+|++. +.+.|+.+-+++
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 89999999999998 3 345889999999999876 678887776654
No 107
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.54 E-value=0.00013 Score=74.60 Aligned_cols=254 Identities=15% Similarity=0.162 Sum_probs=131.4
Q ss_pred cCCHHHHHHHHhhcCCCChh--HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHH
Q 007998 156 VGEIVSAKKVFDEMGVRDIA--SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233 (582)
Q Consensus 156 ~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 233 (582)
...+.+|..+++.+..+++. -|..+..-|+..|+++.|.++|-+. + .+.-.+..|.+.|.++.|.++-
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---~-------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---D-------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---c-------hhHHHHHHHhccccHHHHHHHH
Confidence 33444444444444433322 2334444455555555555554322 1 1233344455555555554443
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-
Q 007998 234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD- 312 (582)
Q Consensus 234 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 312 (582)
.+. .|.+.....|-+-..-.-+.|++.+|+++|-.+. .|+.. |..|-++|..+..+++..+- .|+.
T Consensus 815 ~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d~l 881 (1636)
T KOG3616|consen 815 EEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGDHL 881 (1636)
T ss_pred HHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchHH-----HHHHHhhCcchHHHHHHHHh-----Chhhh
Confidence 322 2223334444444444445555555555555544 44432 44455555555555555442 3443
Q ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCC-C---CHHHHHH---
Q 007998 313 -VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG-T---DMVLWQT--- 384 (582)
Q Consensus 313 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p---~~~~~~~--- 384 (582)
.|-..+..-+...|++..|+..|-+... |.+-+.+|-..+.+++|.++-+.-+-. . -...|..
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig 952 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG 952 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence 3555666677778888888877755443 446677888888888888887654211 0 1122221
Q ss_pred ---HHHHHHhcCChH-------------HHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 385 ---LLGACQLYGDVE-------------MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 385 ---ll~~~~~~g~~~-------------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
....+.++|-++ .|..+.+-..+. .-+.....++.-+...|++++|.+-+-+..+.+
T Consensus 953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 112233344333 333333332222 234566778888889999999988777665543
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.53 E-value=3e-06 Score=72.41 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC
Q 007998 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG 376 (582)
Q Consensus 298 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 376 (582)
.+|++..+ +.|+. +.....++...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|++. ...
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444444 34543 3345556677777777777777777632 335666777777777778888888777766 334
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 377 T-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 377 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
| +...|..+..++...|++++|...|+++++..|+++..+...+.+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4 66777777777888888888888888888888887777766665543
No 109
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=5.1e-05 Score=73.72 Aligned_cols=233 Identities=14% Similarity=0.067 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDM 254 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 254 (582)
++..+-..+...++.++|+.++.++++.. +-+..+|.....++...| .++++...++.+++...+ +..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 45555555666677777777777776653 333444555545555555 456666666666665433 44445544444
Q ss_pred HHhcCCH--HHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH
Q 007998 255 YAKCGLL--DKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330 (582)
Q Consensus 255 y~~~g~~--~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 330 (582)
+.+.|+. +++..+++++. .+.|..+|+.....+...|+++++++.++++++.+.. |...|+.....+.+.++..
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~- 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG- 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc-
Confidence 4444442 44455554433 2345556666555555666666666666666554322 2233333222222111000
Q ss_pred HHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHH
Q 007998 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS-VSMGT-DMVLWQTLLGACQLY----GDVEMAEIASRK 404 (582)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~ 404 (582)
+ .....+++.++..+ +...| |...|+.+...+... ++..+|.+.+.+
T Consensus 194 -----------~----------------~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 194 -----------G----------------LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred -----------c----------------ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 0 00012345555533 34445 677888777777663 345678888888
Q ss_pred HHHcCCCCchhHHHHHHHHHhcC------------------CchHHHHHHHHHH
Q 007998 405 LVEMGSNNCGDFVLLSNLYAAYE------------------RWDDVGRVRKAMK 440 (582)
Q Consensus 405 ~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 440 (582)
+.+.+|.++.++..|+..|.... ..++|.++++.+.
T Consensus 247 ~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 247 VLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 88888888888889999997632 2366788887774
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=3.1e-05 Score=79.24 Aligned_cols=191 Identities=16% Similarity=0.186 Sum_probs=159.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007998 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319 (582)
Q Consensus 240 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 319 (582)
+++|-...-..+...+.++|-...|..+|+++. .|...|.+|...|+..+|..+..+-.+ -+||...|..+.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 445566677788999999999999999999987 677889999999999999999998887 488999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHH
Q 007998 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS-VSMGT-DMVLWQTLLGACQLYGDVEM 397 (582)
Q Consensus 320 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~ 397 (582)
+..-...-+++|.++++..... .-..+.....+.++++++.+.|+. +.++| ...+|-.+..+..+.++++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 8888888889999888876542 111222333457899999999985 45555 67889888888899999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 398 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
|.+.|.....++|++...++.++.+|.+.|+..+|...+++..+-+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999998876643
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=2.2e-05 Score=80.34 Aligned_cols=217 Identities=12% Similarity=0.116 Sum_probs=176.0
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007998 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218 (582)
Q Consensus 139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~ 218 (582)
++|-......+...+...|-...|..+|++. ..|.-.|..|...|+..+|..+..+-.+. +||+..|..+++
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGD 465 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGD 465 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhh
Confidence 4555566677889999999999999999985 57888999999999999999999988874 899999999999
Q ss_pred HHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-C-CCCHHHHHHHHHHHHhCCChhHH
Q 007998 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-C-RKSLVTWNTMVMAFAVHGDGPRA 296 (582)
Q Consensus 219 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A 296 (582)
......-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-. . +--..+|-....+..+.+++..|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 988888888888888765432 11222222334789999999998532 1 44677999999999999999999
Q ss_pred HHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998 297 LELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 297 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 373 (582)
.+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+......|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999998876 57776 589999999999999999999999999966 344455666666778899999999998876
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=4.8e-05 Score=78.57 Aligned_cols=337 Identities=10% Similarity=0.051 Sum_probs=208.7
Q ss_pred CCCChhHHHHHHH--HHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-------
Q 007998 69 NAPSTNDFNAVLR--GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH-G------- 138 (582)
Q Consensus 69 ~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g------- 138 (582)
..=|..+-.+++. .|+.-|+.+.|.+-.+-.. +...|..+.+.|.+..+++-|+-.+..|... |
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 3446677777774 5778899999988877654 4578999999999999988888777766431 1
Q ss_pred C-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 007998 139 F-LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217 (582)
Q Consensus 139 ~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll 217 (582)
. .++ ..-....-.-...|.+++|+.+|.+-.. |..|=..|...|.+++|+++-+.=-.-. -..||..-.
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA 865 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYA 865 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhcccee----hhhhHHHHH
Confidence 1 221 2222333345577999999999988643 4445567788999999999865432222 234566556
Q ss_pred HHHhccCCcHHHHHHHHHHH----------HcC---------CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHH
Q 007998 218 AACGHLGAWKEGDKIHEYIR----------EER---------LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV 278 (582)
Q Consensus 218 ~a~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~ 278 (582)
.-+-..++.+.|.++|++.- ... -..|...|.--....-..|+.+.|+.+|....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~------ 939 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK------ 939 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh------
Confidence 66666778888888876531 110 01122333333344445666666666666554
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHc--CCc------cChhhH
Q 007998 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC--GVK------PNMKHY 350 (582)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~~------~~~~~~ 350 (582)
-|-+++...+-.|+.++|-++-++ .-|....-.+.+.|.+.|++.+|..+|.+.... .+. .+...+
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 355556666667777777766654 225555556788899999999999988877651 111 111112
Q ss_pred HhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----------HHcCCC-CchhHHHH
Q 007998 351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL----------VEMGSN-NCGDFVLL 419 (582)
Q Consensus 351 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~----------~~~~p~-~~~~~~~l 419 (582)
| +....+..+.-.|-.+|++.+..- ......|.+.|.+.+|+++.=+- ..++|. ||.....-
T Consensus 1014 n--lal~s~~~d~v~aArYyEe~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1014 N--LALMSGGSDLVSAARYYEELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred H--HHhhcCchhHHHHHHHHHHcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 1 112223344556667777765322 12234566777777777664331 224553 66677777
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 007998 420 SNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 420 ~~~~~~~g~~~~a~~~~~~m~ 440 (582)
++.+....+++.|..++-..+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 777778888888887766554
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=1.3e-05 Score=79.93 Aligned_cols=245 Identities=16% Similarity=0.066 Sum_probs=127.0
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007998 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263 (582)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 263 (582)
+.++|+..+|.-.|+..++.. |-+...|..|...-+..++-..|...+.+.++.... |..+.-+|.-.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 445555666666665555554 444555555555555555555565555555554322 45555555555666666666
Q ss_pred HHHHHhccc-CCC----------CHHHHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHcCCCHHHH
Q 007998 264 AFEVFDNIK-CRK----------SLVTWNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDG 331 (582)
Q Consensus 264 A~~~~~~~~-~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a 331 (582)
|.+.++.-. ..| +...-+. ..+..........++|-++.. .+..+|......|.-.|--.|.+++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 655555331 000 0000000 011111112233344444432 33233444444444445556666666
Q ss_pred HHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409 (582)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 409 (582)
...|+.++... +-|..+||.|...++...+.++|...|++. .++|. +.++..|.-+|...|.+++|.+.|-.++.+.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 66666666521 224556666666666666667776666655 55554 4456666666777777777777666666543
Q ss_pred CC----------CchhHHHHHHHHHhcCCchHHHH
Q 007998 410 SN----------NCGDFVLLSNLYAAYERWDDVGR 434 (582)
Q Consensus 410 p~----------~~~~~~~l~~~~~~~g~~~~a~~ 434 (582)
+. +...+..|=.++...++.|-+.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 22 11355555555555566554433
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2.4e-07 Score=56.63 Aligned_cols=32 Identities=44% Similarity=0.747 Sum_probs=21.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007998 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271 (582)
Q Consensus 240 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 271 (582)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=3.6e-06 Score=71.89 Aligned_cols=108 Identities=6% Similarity=-0.078 Sum_probs=92.3
Q ss_pred HHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410 (582)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 410 (582)
.++++..+ +.|+. +..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...|+++++++|
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 44555554 23543 445778889999999999999986 4455 788999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 411 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
+++..+..++.++...|++++|...++...+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999877554
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.42 E-value=3e-05 Score=82.99 Aligned_cols=158 Identities=7% Similarity=-0.009 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHh
Q 007998 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS 352 (582)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 352 (582)
..++..+-.|.....+.|.+++|..+++...+ +.||.. ....+...+.+.+++++|....++..... +-+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34688888899999999999999999999987 578864 66777888999999999999999998843 334567777
Q ss_pred hhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCch
Q 007998 353 VVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430 (582)
Q Consensus 353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (582)
+..++.+.|++++|.++|++. ...| +..+|.++..++...|+.++|...|+++++...+-...|..++ ++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 888899999999999999987 2344 4789999999999999999999999999998754445544332 2333
Q ss_pred HHHHHHHHHH
Q 007998 431 DVGRVRKAMK 440 (582)
Q Consensus 431 ~a~~~~~~m~ 440 (582)
.-..+++++.
T Consensus 234 ~~~~~~~~~~ 243 (694)
T PRK15179 234 ADLAALRRLG 243 (694)
T ss_pred HHHHHHHHcC
Confidence 3344555554
No 117
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9.3e-05 Score=73.30 Aligned_cols=348 Identities=11% Similarity=0.038 Sum_probs=213.0
Q ss_pred HHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCH
Q 007998 81 RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD-ALLGTTLLDVYAKVGEI 159 (582)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~ 159 (582)
.+....|+++.|+.+|.+.....+. |...|+.-..+++..|++++|.+=-...++. .|+ ..-|+-+..+..-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4556789999999999999876544 7788999999999999999988766555554 444 35688888888888999
Q ss_pred HHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHH----HHHcCC----CCCCHHHHHHHHHHHhcc-----
Q 007998 160 VSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKR----MKMEGV----FKPNEVTVLGALAACGHL----- 223 (582)
Q Consensus 160 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~----~~pd~~t~~~ll~a~~~~----- 223 (582)
++|+..|.+-.+. |...++-+..++.... .+.+.|.. +...+. ......+|..++...-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999887543 5667777777762110 01111110 000000 000111233333332211
Q ss_pred --CCcHHHHHHHHHHHHc---------------CCCC------------c----------hhHHHHHHHHHHhcCCHHHH
Q 007998 224 --GAWKEGDKIHEYIREE---------------RLDM------------N----------VVVCNAVIDMYAKCGLLDKA 264 (582)
Q Consensus 224 --~~~~~a~~~~~~~~~~---------------~~~~------------~----------~~~~~~li~~y~~~g~~~~A 264 (582)
.+.....+.+..+... +..| | ..-...+.++.-+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0111111111111100 0011 0 01233456666667777777
Q ss_pred HHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC--C----HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007998 265 FEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP--D----DVSYLAALCACNHAGLVDDGVRLFNS 337 (582)
Q Consensus 265 ~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~t~~~ll~a~~~~g~~~~a~~~~~~ 337 (582)
.+-++... ...+..-++....+|...|.+.+....-....+.|-.- + ...+..+..++.+.++++.+..+|.+
T Consensus 244 ~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 244 IQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 77777554 23344445666677888887777776666655544211 1 12233344466667788888888888
Q ss_pred HhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 338 MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDM-VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 338 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
.......|+. +.+....+++.+..+.. -+.|+. .--..=...+.+.|++..|...|.+++..+|+|+..
T Consensus 324 aLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 324 ALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred HhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 7763223332 23344455555555443 233432 122223566789999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 416 FVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 416 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
|...+-+|.+.|.+..|++--+...+.+
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999999999999999998777666653
No 118
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00041 Score=73.51 Aligned_cols=287 Identities=12% Similarity=0.125 Sum_probs=174.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 007998 78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157 (582)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 157 (582)
.+......++-+++|+.+|++.- .+......++. ..+.+++|.+.-+.. ..+.+|+.+..+-.+.|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcC
Confidence 34455666777899999998752 24444555554 335566666554433 14567888888888888
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHH
Q 007998 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237 (582)
Q Consensus 158 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 237 (582)
.+.+|.+-|-+ ..|+..|...+....+.|.|++-.+.+.-.++..- .|... +.++-+|++.+++.+.+.+.
T Consensus 1119 ~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id--~eLi~AyAkt~rl~elE~fi---- 1189 (1666)
T KOG0985|consen 1119 LVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYID--SELIFAYAKTNRLTELEEFI---- 1189 (1666)
T ss_pred chHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-Cccch--HHHHHHHHHhchHHHHHHHh----
Confidence 88888887744 34667788888888888888888887776666544 55443 45677777777776655543
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-----------------------CCCCHHHHHHHHHHHHhCCChh
Q 007998 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-----------------------CRKSLVTWNTMVMAFAVHGDGP 294 (582)
Q Consensus 238 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----------------------~~~~~~~~~~li~~~~~~g~~~ 294 (582)
..||......+.+-+...|.++.|.-+|..+. ...+..+|...-.+|...+.+.
T Consensus 1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred ---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhh
Confidence 23444444445555555555555554444332 0125667877777777666554
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCc-cChhhHHhhhhHHhhcCCHHHHHHHHH--
Q 007998 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK-PNMKHYGSVVDLLGRAGRLQEACDIVK-- 371 (582)
Q Consensus 295 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~-- 371 (582)
-| +|-...+.....-.--++.-|-..|-+++-..+++... |++ .....|+-|.-.|.+- ++++.++-++
T Consensus 1267 lA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1267 LA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred HH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 33 23322333344556778899999999999888877655 332 2345667777777664 3444444333
Q ss_pred --hCCCC------CCHHHHHHHHHHHHhcCChHHH
Q 007998 372 --SVSMG------TDMVLWQTLLGACQLYGDVEMA 398 (582)
Q Consensus 372 --~~~~~------p~~~~~~~ll~~~~~~g~~~~a 398 (582)
+..+. .....|+-|.-.|.+...++.|
T Consensus 1339 wsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1339 WSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 22211 1234566666555555555544
No 119
>PLN02789 farnesyltranstransferase
Probab=98.39 E-value=0.00027 Score=68.71 Aligned_cols=210 Identities=11% Similarity=0.013 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 007998 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGN-LASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219 (582)
Q Consensus 144 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a 219 (582)
.++..+-..+...++.++|..+.+++... +..+|+.-...+...| +++++++.++++.+.. +.+..+|....-.
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHH
Confidence 35666667788889999999999987543 5567777777777777 6799999999999876 5666677776666
Q ss_pred HhccCCc--HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhC---CC
Q 007998 220 CGHLGAW--KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVH---GD 292 (582)
Q Consensus 220 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~---g~ 292 (582)
+.+.+.. +++..+.+.+++...+ +..+|+....++.+.|+++++++.++++. ...|..+|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 6667753 6778888888887643 78899999999999999999999999876 356778898877666554 22
Q ss_pred h----hHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcC----CCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhh
Q 007998 293 G----PRALELFEQMGRAGVKPD-DVSYLAALCACNHA----GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359 (582)
Q Consensus 293 ~----~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 359 (582)
. +++++...+++.. .|+ ...|+.+...+... +...++..++.+....+ ..+......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2 4566666666654 343 45666666666552 33455666666655422 2234555566666654
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.39 E-value=4.2e-05 Score=69.14 Aligned_cols=154 Identities=10% Similarity=0.115 Sum_probs=112.3
Q ss_pred HHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 007998 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331 (582)
Q Consensus 252 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 331 (582)
+-.|.+.|+++.+....+.+. .|. . .|...++.++++..+++..+.. +.|...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~-~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA-DPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh-Ccc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 456778888777665554443 221 0 1222566677777777777642 44566788888889999999999
Q ss_pred HHHHHHHhHcCCccChhhHHhhhhH-HhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998 332 VRLFNSMANCGVKPNMKHYGSVVDL-LGRAGR--LQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLV 406 (582)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 406 (582)
...|++..+.. +.+...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++++
T Consensus 93 ~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 93 LLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999888743 2356677777775 467777 58999999887 4455 67888888899999999999999999999
Q ss_pred HcCCCCchhH
Q 007998 407 EMGSNNCGDF 416 (582)
Q Consensus 407 ~~~p~~~~~~ 416 (582)
++.|.+..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9998765444
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.35 E-value=0.00011 Score=79.41 Aligned_cols=233 Identities=12% Similarity=0.082 Sum_probs=143.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007998 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGV--R-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218 (582)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~ 218 (582)
+...+..|++.|...+++++|.++.+...+ | ....|-.+...+.+.++..++..+ .+. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l----------------~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI----------------D 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh----------------h
Confidence 455677888888888888888888775432 2 233444444466666665555444 222 2
Q ss_pred HHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHH
Q 007998 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRA 296 (582)
Q Consensus 219 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 296 (582)
......++.....+...+.+.+ .+...+..|..+|-+.|+.++|..+++++. .+.|+.+.|.+...|+.. +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2222233333333334444432 234466677888888888888888888765 345677777788788777 88888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhCCC
Q 007998 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSVSM 375 (582)
Q Consensus 297 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 375 (582)
++++.+.... +...+++..+..+|.++.... |+ ...+-.+.. .+....+.
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~------------ki~~~~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIER------------KVLGHREF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHHH------------HHHhhhcc
Confidence 8877776542 455567777777777777632 22 111111111 11122223
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 376 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
..-+.++..+-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3345566667777888888888999999999888888777777777776
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.35 E-value=7.1e-05 Score=70.25 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=28.4
Q ss_pred HHHHcCCCHHHHHHHHHHHhH-cCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998 320 CACNHAGLVDDGVRLFNSMAN-CGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 320 ~a~~~~g~~~~a~~~~~~~~~-~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 373 (582)
..+.+.|++++|...++...+ ..-.| ....+..+..+|...|++++|.+.++.+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555666666666655555 21112 2344555556666666666666555544
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=6.9e-05 Score=67.74 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=51.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 007998 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDV 395 (582)
Q Consensus 318 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 395 (582)
.+....+.|++.+|...+++..... ++|...|+.+.-+|.+.|++++|..-|.+. .+.| +....+.|...+.-.|+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 3334444444444444444444311 334444444444444444444444444332 2222 333344444444444455
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHH
Q 007998 396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435 (582)
Q Consensus 396 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 435 (582)
+.|+.++.......+.+..+-..|.-.....|++++|..+
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 5555554444444444444444444444444554444443
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.00026 Score=69.60 Aligned_cols=177 Identities=15% Similarity=0.074 Sum_probs=118.1
Q ss_pred CHHHHHHHHhccc-----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007998 260 LLDKAFEVFDNIK-----CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334 (582)
Q Consensus 260 ~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 334 (582)
++.+++..-+.++ ..|+...+...+.+.........+-.++.+-.+. .-...-|...+. +...|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHH
Confidence 3455555556665 2345555565555444333333333322222211 112233444443 4457888888888
Q ss_pred HHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
++.+.+. .+-|........+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.+++.....+|++
T Consensus 329 l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 329 LQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 8888763 2345566667778888889999998888877 55665 6677778888888899999999998888888988
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 413 CGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 413 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
+..|..|+.+|...|+..++...+.++.
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 8899888888888888888877776554
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.29 E-value=7.1e-06 Score=69.01 Aligned_cols=95 Identities=13% Similarity=0.022 Sum_probs=83.4
Q ss_pred hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 007998 348 KHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425 (582)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (582)
...-.+...+...|++++|.++|+-. .+.| +...|..|...|...|++++|+..|.++..++|++|.++..++.+|..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33334566677899999999999977 4455 788899999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhC
Q 007998 426 YERWDDVGRVRKAMKNR 442 (582)
Q Consensus 426 ~g~~~~a~~~~~~m~~~ 442 (582)
.|+.+.|.+.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999977643
No 126
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.28 E-value=0.00031 Score=74.51 Aligned_cols=107 Identities=14% Similarity=-0.013 Sum_probs=68.8
Q ss_pred HHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998 330 DGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVE 407 (582)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 407 (582)
.|...+...++.. ..+...|+.|.- ....|.+.-|.--|-+- -..| ...+|..+...|....+++-|...|.+...
T Consensus 801 ~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 3444444444311 123334443332 24445555554444322 2233 677788888888888999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998 408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438 (582)
Q Consensus 408 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 438 (582)
++|.|...+.....+-...|+.-++..+|..
T Consensus 879 LdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 879 LDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9999988887777777788888777777765
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00033 Score=63.40 Aligned_cols=140 Identities=12% Similarity=0.052 Sum_probs=95.0
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHH----hhc
Q 007998 285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL----GRA 360 (582)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 360 (582)
..|...|++++|++...... ..+.. ..=...+.+..+.+-|.+.++.|.+- -+..+.+.|..++ ...
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~--Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAA--ALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34666777777777666511 11111 11222344566677777777777751 2233444444443 345
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHH
Q 007998 361 GRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG 433 (582)
Q Consensus 361 g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 433 (582)
+.+.+|.-+|++| ...|+..+.+....++...|++++|+.+++.++..++++|.+...++-.--..|+-.++.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 6688888888888 356788888888888889999999999999999999988888888887777888766554
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=1.5e-05 Score=67.49 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=73.9
Q ss_pred hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555666777778888888877765 3334 66777777778888888888888888888888888888888888888
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 007998 425 AYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 425 ~~g~~~~a~~~~~~m~~~~ 443 (582)
..|++++|.+.++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888888776644
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00047 Score=61.96 Aligned_cols=169 Identities=12% Similarity=0.151 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccc-CCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 007998 247 VCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSL-VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324 (582)
Q Consensus 247 ~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 324 (582)
+|..++-+...+|+.+.|...++++. .-|.. ..-..-..-+-..|++++|+++++.+.+.. +-|.+++..=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 44445555666788888888887765 01221 111111122455788999999999988864 3455667666656666
Q ss_pred CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHH
Q 007998 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY---GDVEMAE 399 (582)
Q Consensus 325 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~ 399 (582)
.|..-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -..| ++..+..+...+... .+.+.+.
T Consensus 133 ~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred cCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777777777776666 34678899999999999999999999989887 3345 555666666555433 3788899
Q ss_pred HHHHHHHHcCCCCchhHH
Q 007998 400 IASRKLVEMGSNNCGDFV 417 (582)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~ 417 (582)
+.|.+.+++.|.+...+.
T Consensus 212 kyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHhChHhHHHHH
Confidence 999999999986544443
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.23 E-value=0.0002 Score=64.77 Aligned_cols=158 Identities=15% Similarity=0.052 Sum_probs=110.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007998 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218 (582)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~ 218 (582)
|..+ ..+-..+.-.|+-+....+..... ..|....+..+....+.|++.+|+..|++..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHHH
Confidence 3344 445566666777777666665542 2355566667777888888888888888877665 777888888888
Q ss_pred HHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHH
Q 007998 219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRA 296 (582)
Q Consensus 219 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 296 (582)
+|.+.|+.++|+.-|.+..+.... +....|.|.-.|.-.|+++.|+.++.... ...|...-..+.......|++++|
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 888888888888888887776432 56667777777777888888888877543 133666667777777778888887
Q ss_pred HHHHHHH
Q 007998 297 LELFEQM 303 (582)
Q Consensus 297 ~~~~~~m 303 (582)
..+-..-
T Consensus 222 ~~i~~~e 228 (257)
T COG5010 222 EDIAVQE 228 (257)
T ss_pred Hhhcccc
Confidence 7766543
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.22 E-value=0.0011 Score=72.10 Aligned_cols=233 Identities=11% Similarity=0.027 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC
Q 007998 109 LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188 (582)
Q Consensus 109 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 188 (582)
..+..|+..+...+++++|.++.+..++..+ .....|-.+...|.+.++.+++..+ .++.......
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 3566666777677777777777776555532 1222333333355556654444333 3444455555
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007998 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268 (582)
Q Consensus 189 ~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 268 (582)
++.-+..+...|... .-+...+..+..+|.++|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++
T Consensus 98 ~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 98 KWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred chhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 564444445555554 3455677788888888888888888888888876 44788888888888888 888888887
Q ss_pred hcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC
Q 007998 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY-LAALCACNHAGLVDDGVRLFNSMAN-CGVKPN 346 (582)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~ 346 (582)
.+.. ..|...+++.++.++|.++... .|+...+ ..++ +.+.. .|...-
T Consensus 173 ~KAV------------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~----------------~ki~~~~~~~~~ 222 (906)
T PRK14720 173 KKAI------------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIE----------------RKVLGHREFTRL 222 (906)
T ss_pred HHHH------------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHH----------------HHHHhhhccchh
Confidence 7664 2256666777888888877764 3443322 2222 22222 122222
Q ss_pred hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007998 347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQ 390 (582)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 390 (582)
..++--+...|-..++++++.++++.+ ...| |.....-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 333334445555666666666666655 3333 4444444554443
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00038 Score=74.73 Aligned_cols=143 Identities=13% Similarity=0.068 Sum_probs=116.6
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH-HHHH
Q 007998 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV-SYLA 317 (582)
Q Consensus 241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 317 (582)
...++..+-.|.....+.|.+++|+.+++... ..| +...+..++..+.+.+++++|+..+++.... .|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45568888999999999999999999999875 344 5667888999999999999999999999885 66664 5666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 007998 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLL 386 (582)
Q Consensus 318 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 386 (582)
+..++.+.|++++|..+|+++...+ +-+...+..+..++-..|+.++|...|++. ...|-...|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 6678889999999999999999832 234678888999999999999999999987 2334455555554
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.0015 Score=64.37 Aligned_cols=116 Identities=14% Similarity=0.043 Sum_probs=57.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 007998 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260 (582)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 260 (582)
.-.+.+.|++++|+..++.++..- |-|+.........+.+.++..+|.+.++.++..... .....-.+.++|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCC
Confidence 333445555555555555555442 333333444444555555555555555555554211 13444445555555555
Q ss_pred HHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHH
Q 007998 261 LDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALEL 299 (582)
Q Consensus 261 ~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 299 (582)
+++|...++... .+.|...|..|..+|...|+..++..-
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 555555555433 233445555555555555555544433
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=3.4e-06 Score=52.23 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCh
Q 007998 74 NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDA 108 (582)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 108 (582)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.12 E-value=0.013 Score=58.57 Aligned_cols=398 Identities=9% Similarity=0.048 Sum_probs=199.4
Q ss_pred cchhchHHHHHhcCCCCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHH
Q 007998 40 FPVRSKIIEFYALSPLNELAYAHALFRQINA--P-STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK 116 (582)
Q Consensus 40 ~~~~~~~~~li~~y~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 116 (582)
|+-..+|+.||.-+....+++++...+++.. | ....|..-|..-....+++....+|.+.+..-. +...|..-|.
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHH
Confidence 5444568899987766888889988888752 3 556799999999999999999999999876533 3444554444
Q ss_pred HHHh-cCChHHHH----HHHHHHH-HcCCCCc-hHHHHHHHHH---------HHhcCCHHHHHHHHhhcCC-C--Ch-hH
Q 007998 117 ACAR-VLALFETL----QIHSHVL-RHGFLAD-ALLGTTLLDV---------YAKVGEIVSAKKVFDEMGV-R--DI-AS 176 (582)
Q Consensus 117 ~~~~-~~~~~~a~----~~~~~~~-~~g~~~~-~~~~~~li~~---------y~~~g~~~~A~~~f~~m~~-~--~~-~~ 176 (582)
-..+ .++....+ +.|+.++ +.|+++- -.+|+.-++. |....+++..++++.++.. | |. ..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3322 23333322 3344333 3454332 2345555443 3344467777888887753 2 21 12
Q ss_pred HHHH------HHHH-------HhCCChhHHHHHHHHHHH--cCCCCCCHHH---------------HHHHHHHHhccCCc
Q 007998 177 WNAL------IAGL-------AQGNLASEAVDLFKRMKM--EGVFKPNEVT---------------VLGALAACGHLGAW 226 (582)
Q Consensus 177 ~~~l------i~~~-------~~~g~~~~A~~~~~~m~~--~g~~~pd~~t---------------~~~ll~a~~~~~~~ 226 (582)
|+.. |... -+...+..|.+++++... .|. .-+..+ |-..|.-=-..+--
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL-~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGL-NRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhh-cccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 3322 2111 123345556666655532 233 222222 11111111000000
Q ss_pred --------HHHHHHHHHHH-HcCCCCchhHHHH-----HHHHHHhcCCH-------HHHHHHHhccc---CCCCHHHHHH
Q 007998 227 --------KEGDKIHEYIR-EERLDMNVVVCNA-----VIDMYAKCGLL-------DKAFEVFDNIK---CRKSLVTWNT 282 (582)
Q Consensus 227 --------~~a~~~~~~~~-~~~~~~~~~~~~~-----li~~y~~~g~~-------~~A~~~~~~~~---~~~~~~~~~~ 282 (582)
....-++++.+ -.+..|++....+ .-+.+...|+. +++..++++.. ...+...|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111 1122232211111 11222233332 23333333222 1112222222
Q ss_pred HHHHHHhC---CChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhHH
Q 007998 283 MVMAFAVH---GDGPRALELFEQMGRA-GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDLL 357 (582)
Q Consensus 283 li~~~~~~---g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 357 (582)
+..---.. .+.+.....++++... ...|+ .+|...++.-.+..-++.|+.+|.++.+.+..+ ++.++++++.-|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 22111111 1244455555555442 12232 355666666666667777777777777754444 666666666655
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC-CchhHHHHHHHHHhcCCchHH
Q 007998 358 GRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEM--GSN-NCGDFVLLSNLYAAYERWDDV 432 (582)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~a 432 (582)
+ .++.+-|.++|+-- ..-+ ++..-...+.-+...++-..+..+|++++.. .|+ ....|..++.--+.-|+.+.+
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 4 45566777777632 2122 3333445566666667777777777777765 222 234666666666677777777
Q ss_pred HHHHHHHHhC
Q 007998 433 GRVRKAMKNR 442 (582)
Q Consensus 433 ~~~~~~m~~~ 442 (582)
.++-+++...
T Consensus 492 ~~lekR~~~a 501 (656)
T KOG1914|consen 492 LKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHh
Confidence 7776666543
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.6e-06 Score=51.63 Aligned_cols=34 Identities=41% Similarity=0.681 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC
Q 007998 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311 (582)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 311 (582)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3689999999999999999999999999888887
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00011 Score=73.01 Aligned_cols=122 Identities=12% Similarity=0.085 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 007998 315 YLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY 392 (582)
Q Consensus 315 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 392 (582)
...++..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|.+++++. ...| |...+......|...
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 3455666666777888888888877643 443 334677777777778888887765 3334 666777777788899
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
++++.|+.+++++.+..|.+..+|..|+.+|...|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998775
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00016 Score=71.65 Aligned_cols=125 Identities=14% Similarity=0.054 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 007998 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224 (582)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~ 224 (582)
.-.+|+..+...++++.|..+|+++.+.+...+..++..+...++..+|++++++..... +-|...+..-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcC
Confidence 334555666667788888888888877766666677777777788888888888877653 445556666666677777
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc
Q 007998 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272 (582)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 272 (582)
+.+.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.++
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7788877777777763 2355677777777777777777777777766
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=7.9e-06 Score=50.21 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC
Q 007998 74 NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS 106 (582)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 106 (582)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.96 E-value=0.00024 Score=60.09 Aligned_cols=94 Identities=9% Similarity=0.033 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHH
Q 007998 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFA 288 (582)
Q Consensus 211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~ 288 (582)
.....+...+...|++++|...++.+...+ +.+...+..+...|.+.|++++|...|++.. .+.+...|..+...|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 334444455555555555655555555543 2244555555555555666666665555442 1334445555555566
Q ss_pred hCCChhHHHHHHHHHHh
Q 007998 289 VHGDGPRALELFEQMGR 305 (582)
Q Consensus 289 ~~g~~~~A~~~~~~m~~ 305 (582)
..|++++|+..|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666655554
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.5e-05 Score=48.97 Aligned_cols=33 Identities=39% Similarity=0.635 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 007998 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP 208 (582)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p 208 (582)
.+||++|.+|++.|+++.|.++|++|.+.|+ +|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv-~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGV-KP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 5889999999999999999999999998887 76
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0085 Score=54.56 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=75.0
Q ss_pred HHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----CCC
Q 007998 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH----AGL 327 (582)
Q Consensus 252 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~ 327 (582)
...|...|++++|.+...... .-+....+ +..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~-~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE-NLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc-hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 334555555555555555432 22222221 22233444555555555555542 233444444444432 334
Q ss_pred HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 007998 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDV-EMAEIASRK 404 (582)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~ 404 (582)
+.+|.-+|++|.+ ..+|+..+.+-+.-+....|++++|..++++. ....++.+...++..-...|.. +.-.+...+
T Consensus 189 ~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 189 IQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 5556666666554 12455555555555555566666666666554 2222455555555444444433 444555666
Q ss_pred HHHcCCCC
Q 007998 405 LVEMGSNN 412 (582)
Q Consensus 405 ~~~~~p~~ 412 (582)
+....|..
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 66666654
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.86 E-value=0.00085 Score=57.46 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=47.9
Q ss_pred CCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh--hhHHhhhhHHhhcCCH
Q 007998 290 HGDGPRALELFEQMGRAGVKPDD----VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM--KHYGSVVDLLGRAGRL 363 (582)
Q Consensus 290 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 363 (582)
.++...+...++.+... .|+. .....+...+...|++++|...|+.+......|.. .....|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45555555555555543 1221 12222334444555555555555555553211211 1222334444555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007998 364 QEACDIVKSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRK 404 (582)
Q Consensus 364 ~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 404 (582)
++|+..++..+..+ ....+......+...|+.++|...|++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555554432111 223333333444444444444444443
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.001 Score=56.91 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=68.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc--hhHHHHH
Q 007998 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE---VTVLGALAACGHLGAWKEGDKIHEYIREERLDMN--VVVCNAV 251 (582)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 251 (582)
|..++..+ ..++...+.+.++.+.... +.+. .....+...+...|++++|...|+.+......++ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33444444 3666677766677776653 2331 2223344556666777777777777766553332 1233345
Q ss_pred HHHHHhcCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 007998 252 IDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302 (582)
Q Consensus 252 i~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (582)
...+...|++++|...++... .......+......|...|+.++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666777777777776554 112233445555666666666666666654
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0031 Score=56.87 Aligned_cols=162 Identities=14% Similarity=0.119 Sum_probs=124.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHh
Q 007998 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA-LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358 (582)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 358 (582)
|..++-+....|+.+.|...++++... + |.+.-...+ ..-+...|++++|.++++.+.+.+ +.|..+|-.-+-+.-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 444556667789999999999998876 3 554322221 112445789999999999999855 456667766666777
Q ss_pred hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC---CchHHH
Q 007998 359 RAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE---RWDDVG 433 (582)
Q Consensus 359 ~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~ 433 (582)
..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.+++++-..|.++..+..++..+.-.| +.+-++
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 778777887766654 344699999999999999999999999999999999999999999999987665 466678
Q ss_pred HHHHHHHhCCC
Q 007998 434 RVRKAMKNRDV 444 (582)
Q Consensus 434 ~~~~~m~~~~~ 444 (582)
+.+.+..+...
T Consensus 212 kyy~~alkl~~ 222 (289)
T KOG3060|consen 212 KYYERALKLNP 222 (289)
T ss_pred HHHHHHHHhCh
Confidence 88887776544
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00018 Score=55.85 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=71.9
Q ss_pred HHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 007998 350 YGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427 (582)
Q Consensus 350 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (582)
+..+...+...|++++|.+.+++. ...| +...+..+...+...++++.|...+++..+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 344566677788888888888765 3334 44667777778888888899999998888888888778888888888888
Q ss_pred CchHHHHHHHHHHhC
Q 007998 428 RWDDVGRVRKAMKNR 442 (582)
Q Consensus 428 ~~~~a~~~~~~m~~~ 442 (582)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888776543
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.80 E-value=2.6e-05 Score=59.70 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=50.4
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHH
Q 007998 360 AGRLQEACDIVKSV----SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV 435 (582)
Q Consensus 360 ~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 435 (582)
.|++++|+.+++++ +..|+...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666655 2122444555567777777777777777777 555665656666677777888888888777
Q ss_pred HHH
Q 007998 436 RKA 438 (582)
Q Consensus 436 ~~~ 438 (582)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.80 E-value=0.075 Score=56.63 Aligned_cols=379 Identities=15% Similarity=0.078 Sum_probs=198.6
Q ss_pred CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 007998 56 NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS 132 (582)
Q Consensus 56 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 132 (582)
|+.++|..+++... ..|..+...+-..|.+.++.++|..+|++.... -|+......+..++.+.+++.+-.++--
T Consensus 57 gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~ 134 (932)
T KOG2053|consen 57 GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAAL 134 (932)
T ss_pred cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776543 235566667777777777777777777777653 4556666666777777776666555444
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCC----------HHHHHHHHhhcCCCC--hhH---HHHHHHHHHhCCChhHHHHHH
Q 007998 133 HVLRHGFLADALLGTTLLDVYAKVGE----------IVSAKKVFDEMGVRD--IAS---WNALIAGLAQGNLASEAVDLF 197 (582)
Q Consensus 133 ~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~f~~m~~~~--~~~---~~~li~~~~~~g~~~~A~~~~ 197 (582)
++-+. ++.+.+.+=++++.+...-. +.-|.+.++.+.+.+ ..+ ...-....-..|++++|++++
T Consensus 135 ~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l 213 (932)
T KOG2053|consen 135 QLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFL 213 (932)
T ss_pred HHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 44443 23344444445555543321 233555555554332 100 111112234566777777777
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----------------cCCH
Q 007998 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK----------------CGLL 261 (582)
Q Consensus 198 ~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----------------~g~~ 261 (582)
..=......+-+...-+--+..+...+++.+..++-.+++..|.+ | |...++.+.+ .+.+
T Consensus 214 ~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l 289 (932)
T KOG2053|consen 214 AITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSL 289 (932)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhH
Confidence 433322221334444445566666777777777777777776643 2 3333332221 1112
Q ss_pred HHHHHHHhcccCCCCHHHHHHHHHHH---HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007998 262 DKAFEVFDNIKCRKSLVTWNTMVMAF---AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM 338 (582)
Q Consensus 262 ~~A~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 338 (582)
+...+..++......-..|-+-+.++ -.-|+.+++...|-+- -|-+| .+..=+..|...=..+.-..++...
T Consensus 290 ~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l 364 (932)
T KOG2053|consen 290 DECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKL 364 (932)
T ss_pred HHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHh
Confidence 22222222111011111222222222 2345555554443321 12233 2223333444444445555555555
Q ss_pred hHcCCccChh-------hHHhhhhHHhhcCCHH-----HHHHHHHhC------C------CCCCH---------HHHHHH
Q 007998 339 ANCGVKPNMK-------HYGSVVDLLGRAGRLQ-----EACDIVKSV------S------MGTDM---------VLWQTL 385 (582)
Q Consensus 339 ~~~~~~~~~~-------~~~~li~~~~~~g~~~-----~A~~~~~~~------~------~~p~~---------~~~~~l 385 (582)
... .++.. -+.+.+....-.|.++ .-..++++. + .-|.. .+-+.|
T Consensus 365 ~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~L 442 (932)
T KOG2053|consen 365 VLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHL 442 (932)
T ss_pred hcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHH
Confidence 441 12211 1233333333334221 122222211 1 11221 134677
Q ss_pred HHHHHhcCCh---HHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 007998 386 LGACQLYGDV---EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448 (582)
Q Consensus 386 l~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 448 (582)
+..|.+.++. -+|+.+++..+...|.|...-..|+.+|.-.|-+..|..+++.+.-+.|..++
T Consensus 443 id~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 443 IDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 7888888765 56777788888888999999999999999999999999999998877776554
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00049 Score=56.49 Aligned_cols=98 Identities=14% Similarity=0.038 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhHcC-Ccc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 007998 317 AALCACNHAGLVDDGVRLFNSMANCG-VKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGAC 389 (582)
Q Consensus 317 ~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 389 (582)
.+...+...|++++|...|..+.... -.+ ....+..+..++.+.|++++|.+.++.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 33444445555555555555555411 001 1223334555555555555555555544 11121 34455555566
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCch
Q 007998 390 QLYGDVEMAEIASRKLVEMGSNNCG 414 (582)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~p~~~~ 414 (582)
...|+.+.|...++++++..|+++.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666665543
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.00033 Score=57.51 Aligned_cols=97 Identities=13% Similarity=-0.004 Sum_probs=81.2
Q ss_pred hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---chhHHHH
Q 007998 348 KHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLL 419 (582)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 419 (582)
.++..++..+.+.|++++|.+.++.+ ...|+ ...+..+...+...|+++.|...++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34556778889999999999999887 22333 3566778889999999999999999999998874 5678899
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 420 SNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 420 ~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
+.++.+.|++++|.+.++.+.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999999987654
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.76 E-value=7.7e-05 Score=54.58 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC-CchHHHHHHHHHHhC
Q 007998 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE-RWDDVGRVRKAMKNR 442 (582)
Q Consensus 378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 442 (582)
++.+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999999999999999999 799999999887653
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.74 E-value=0.00047 Score=68.63 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=51.5
Q ss_pred HHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007998 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMA 398 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 398 (582)
.....|++++|...|+++++.. +.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3444556666666666665522 123344445555555555665555555544 3333 344555555555555555666
Q ss_pred HHHHHHHHHcCCCCchhHHHH
Q 007998 399 EIASRKLVEMGSNNCGDFVLL 419 (582)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l 419 (582)
+..|+++++++|+++.....+
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHH
Confidence 666655555555555444433
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.2e-05 Score=45.70 Aligned_cols=31 Identities=29% Similarity=0.611 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 007998 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGV 205 (582)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 205 (582)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888877663
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=3.9e-05 Score=45.83 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 007998 74 NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH 104 (582)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 104 (582)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887763
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.64 E-value=0.00013 Score=52.69 Aligned_cols=59 Identities=20% Similarity=0.176 Sum_probs=44.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 385 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
+...+...|++++|+..|+++++.+|+++..+..++.++...|++++|...+++..+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566777888888888888888888877888888888888888888888887776543
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.0022 Score=56.69 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhh
Q 007998 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD--DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353 (582)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (582)
....+..+...+...|++++|+..|++..+....|. ...+..+...+.+.|++++|...+++..... +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566777777778888888888888776433222 2456667777777888888888887777632 1234445555
Q ss_pred hhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428 (582)
Q Consensus 354 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (582)
..+|...|+...+..-++.. ...++.|.+.++++.+.+|++ |..+...+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 56666666655544322211 112677888888888888865 5566666665554
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.57 E-value=0.0013 Score=65.52 Aligned_cols=101 Identities=17% Similarity=0.066 Sum_probs=80.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcC
Q 007998 283 MVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361 (582)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 361 (582)
....+...|++++|+..|++.++. .| +...|..+..++...|++++|...+++++... +.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 355677889999999999999985 44 45677888889999999999999999999843 235677888899999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHH
Q 007998 362 RLQEACDIVKSV-SMGTDMVLWQTLL 386 (582)
Q Consensus 362 ~~~~A~~~~~~~-~~~p~~~~~~~ll 386 (582)
++++|...|++. .+.|+......++
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999886 5556544444444
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00053 Score=63.42 Aligned_cols=91 Identities=18% Similarity=0.126 Sum_probs=64.0
Q ss_pred HHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007998 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAE 399 (582)
Q Consensus 322 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 399 (582)
..+.+++++|...|.++++.. +-|...|..-..+|.+.|.++.|.+-.+.. .+.| -..+|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 456777888888888777632 234455555667777888877777766654 5555 3567777777788888888888
Q ss_pred HHHHHHHHcCCCCc
Q 007998 400 IASRKLVEMGSNNC 413 (582)
Q Consensus 400 ~~~~~~~~~~p~~~ 413 (582)
+.|++.++++|++.
T Consensus 170 ~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 170 EAYKKALELDPDNE 183 (304)
T ss_pred HHHHhhhccCCCcH
Confidence 88888888888775
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.56 E-value=0.00096 Score=59.04 Aligned_cols=95 Identities=12% Similarity=0.039 Sum_probs=66.6
Q ss_pred hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998 348 KHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422 (582)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 422 (582)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555556666667777777766654 21221 35677788888888999999999999988888888888888888
Q ss_pred HHhcCC--------------chHHHHHHHHHHhC
Q 007998 423 YAAYER--------------WDDVGRVRKAMKNR 442 (582)
Q Consensus 423 ~~~~g~--------------~~~a~~~~~~m~~~ 442 (582)
|...|+ +++|.+++++....
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 887776 45556666555543
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.099 Score=50.86 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH
Q 007998 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV 328 (582)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 328 (582)
+..+.-+...|+...|.++-.+.. -||-.-|-..+.+|+..+++++-.++... .-. ..-|-.++.+|.+.|+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs--PIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK-VPDKRFWWLKIKALAENKDWDELEKFAKS----KKS--PIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--CCChHHHHHHHHHCCCH
Confidence 334555667788888888888888 78888888889999999998877765432 122 36677888888888888
Q ss_pred HHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007998 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389 (582)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 389 (582)
.+|..+...+. +..-+.+|.++|++.+|.+.--+.. |...+..+..-|
T Consensus 254 ~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 88888876621 1345678888888888877655443 444444444433
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.003 Score=60.91 Aligned_cols=165 Identities=10% Similarity=0.069 Sum_probs=115.3
Q ss_pred CCHHHHHHHH-HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHhHcCCccChhh--
Q 007998 275 KSLVTWNTMV-MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC--ACNHAGLVDDGVRLFNSMANCGVKPNMKH-- 349 (582)
Q Consensus 275 ~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 349 (582)
|...+|..+- .++...|++++|.+.--...+. .++. .+...++ ++-..++.+.+...|++.+.. .|+-..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHH
Confidence 3344554443 4566778888888777666553 2221 2222222 334567788888888887763 343221
Q ss_pred -----------HHhhhhHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 350 -----------YGSVVDLLGRAGRLQEACDIVKSV-SMGT-----DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 350 -----------~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
+..=..-..+.|++.+|.+.+.+. .+.| +...|.....+..+.|+.++|+.--+++++++|.-
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 111123356789999999999875 4444 56667777778889999999999999999999988
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 413 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
...|..-++++...++|++|.+-++...+...
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88999999999999999999999998776543
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0023 Score=59.70 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=87.8
Q ss_pred ccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCchhHHH
Q 007998 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY---GDVEMAEIASRKLVEMGSNNCGDFVL 418 (582)
Q Consensus 344 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 418 (582)
+-|...|..|...|.+.|+++.|..-|.+. .+.| ++..+..+..++... ....++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 457889999999999999999999999876 4444 666777777665433 35789999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 007998 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448 (582)
Q Consensus 419 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 448 (582)
|+..+...|++.+|...++.|.+......|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654433
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.50 E-value=0.00028 Score=50.81 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=50.9
Q ss_pred hhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998 353 VVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413 (582)
Q Consensus 353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 413 (582)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456688899999999999987 4456 678888999999999999999999999999999764
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.0044 Score=64.59 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
+...|..+.-.....|++++|...++++++++| +...|..++.++...|+.++|...+++....+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 445566665555556777777777777777777 456777777777777777777777776665544
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.44 E-value=0.005 Score=52.08 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 255 (582)
....+...+.+.|++++|..+|+.+..-. +-+..-|-.+..+|...|++++|...|.......+ .|+..+-.+..+|
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 33344444555555666655555555443 34444455555555555555555555555555542 2444555555555
Q ss_pred HhcCCHHHHHHHHhcc
Q 007998 256 AKCGLLDKAFEVFDNI 271 (582)
Q Consensus 256 ~~~g~~~~A~~~~~~~ 271 (582)
.+.|+.+.|++.|+..
T Consensus 114 L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 114 LACDNVCYAIKALKAV 129 (157)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 5555555555555543
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.42 E-value=0.0017 Score=50.15 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=41.3
Q ss_pred HHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007998 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAE 399 (582)
Q Consensus 322 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 399 (582)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+++.|.
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 88 (100)
T cd00189 10 YYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEAL 88 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHH
Confidence 333444444444444443311 111133333444444455555555555443 1122 3345555555666666666666
Q ss_pred HHHHHHHHcCC
Q 007998 400 IASRKLVEMGS 410 (582)
Q Consensus 400 ~~~~~~~~~~p 410 (582)
..+++..+..|
T Consensus 89 ~~~~~~~~~~~ 99 (100)
T cd00189 89 EAYEKALELDP 99 (100)
T ss_pred HHHHHHHccCC
Confidence 66666655554
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.40 E-value=0.0017 Score=57.22 Aligned_cols=93 Identities=9% Similarity=-0.141 Sum_probs=72.0
Q ss_pred hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998 347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421 (582)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 421 (582)
...|..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566667777788888888888765 22222 3578888899999999999999999999999988888888888
Q ss_pred HHH-------hcCCchHHHHHHHHH
Q 007998 422 LYA-------AYERWDDVGRVRKAM 439 (582)
Q Consensus 422 ~~~-------~~g~~~~a~~~~~~m 439 (582)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 777877666655543
No 168
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.007 Score=54.87 Aligned_cols=127 Identities=10% Similarity=-0.020 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-----hHHHHHHHH
Q 007998 77 NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD-----ALLGTTLLD 151 (582)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~ 151 (582)
+.++..+.-.|.+.-.+.++.+.++...+-++.....+.+.-.+.||.+.|...++.+.+..-..| ..+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444555555555555555554444555555555555555555555555555444221222 222222223
Q ss_pred HHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 007998 152 VYAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKME 203 (582)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 203 (582)
.|.-.+++..|...|++++.. |++.-|.-.-...-.|+..+|++....|++.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445555555555554432 3333333333333345555555555555544
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=97.38 E-value=0.0011 Score=56.35 Aligned_cols=88 Identities=13% Similarity=0.038 Sum_probs=76.9
Q ss_pred hhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchH
Q 007998 354 VDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDD 431 (582)
Q Consensus 354 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 431 (582)
..-+...|++++|..+|+-+ -..| |...|..|...|...++++.|...|.....++++||.++...+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33455789999999999876 2223 677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 007998 432 VGRVRKAMKN 441 (582)
Q Consensus 432 a~~~~~~m~~ 441 (582)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998776
No 170
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.38 E-value=0.0045 Score=54.91 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHHhc-----cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHH
Q 007998 207 KPNEVTVLGALAACGH-----LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN 281 (582)
Q Consensus 207 ~pd~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 281 (582)
..|..+|..++..+.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 4566667666666643 35666667777788888888899999998887654 2221 111222111
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHhH
Q 007998 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV-DDGVRLFNSMAN 340 (582)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~~~~ 340 (582)
. -...+-+-|++++++|...|+.||..|+..+++.+.+.+.. .+..++.-.|-+
T Consensus 113 ---~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 113 ---M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred ---c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 0 11234567899999999999999999999999998766542 333333333333
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.0018 Score=60.03 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=77.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcC
Q 007998 284 VMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAG 361 (582)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 361 (582)
..-+.+.+++.+|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+..+.. .|. ...|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccC
Confidence 34567889999999999999884 55 4566777778999999999999888888763 343 578999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHH
Q 007998 362 RLQEACDIVKSV-SMGTDMVLWQT 384 (582)
Q Consensus 362 ~~~~A~~~~~~~-~~~p~~~~~~~ 384 (582)
++++|.+.|++. .+.|+-.+|..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999999876 77887666543
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.36 E-value=0.00061 Score=50.39 Aligned_cols=58 Identities=9% Similarity=-0.010 Sum_probs=48.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
..+.+.++++.|.++++++++++|+++..+...+.+|...|++++|...++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4677888888888888888888888888888888888888888888888888876543
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.36 E-value=0.00028 Score=51.35 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=42.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
...|++++|++.|+++++.+|+++.....++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35688888888888888888888888888888888888888888888766543
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.36 E-value=0.0091 Score=57.32 Aligned_cols=133 Identities=12% Similarity=0.166 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhH
Q 007998 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA-CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356 (582)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 356 (582)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888888888888887542 2222333333333 33457777799999998882 34567778888899
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 357 LGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+++....+.+++.+.-|.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999876 32333 3599999999999999999999999999988864
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.31 E-value=0.18 Score=48.57 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=45.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCC-----CCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHhH--cCCccC--hhhHH
Q 007998 282 TMVMAFAVHGDGPRALELFEQMGRAGV-----KPDDV-SYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPN--MKHYG 351 (582)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~--~~~~~~--~~~~~ 351 (582)
.+...+.+.|++++|+++|++....-. +++.. .|...+-++...|++..|.+.+++... .++..+ .....
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 344556666666666666666554321 11121 222333345556777777777776664 122222 23344
Q ss_pred hhhhHHhh--cCCHHHHHHHHHhC
Q 007998 352 SVVDLLGR--AGRLQEACDIVKSV 373 (582)
Q Consensus 352 ~li~~~~~--~g~~~~A~~~~~~~ 373 (582)
.|++++-. ...+.+|..-|+.+
T Consensus 240 ~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 240 DLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHccc
Confidence 45555533 34456666666665
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.29 E-value=0.19 Score=48.56 Aligned_cols=274 Identities=15% Similarity=0.140 Sum_probs=170.6
Q ss_pred cCCHHHHHHHHhhcC---CCChhHHHHHHH--HHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHH
Q 007998 156 VGEIVSAKKVFDEMG---VRDIASWNALIA--GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD 230 (582)
Q Consensus 156 ~g~~~~A~~~f~~m~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~ 230 (582)
.||-..|+++-.+.. ..|....--++. +-.-.|+++.|.+-|+.|.... ..-..-+..+.-...+.|+.+.|+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHH
Confidence 355555555544332 223333333332 2234678888888888886431 111122344444556778888888
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCCHHH--HHHHHHHHHh---CCChhHHHHHHH
Q 007998 231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKSLVT--WNTMVMAFAV---HGDGPRALELFE 301 (582)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~--~~~li~~~~~---~g~~~~A~~~~~ 301 (582)
++-+..-..-.. -...+.+.+...+..|+++.|+++.+.-. ..+|+.- --.|+.+-+. .-+...|...-.
T Consensus 175 ~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 887776654322 35667788888999999999999988543 3555432 2233333221 234445555444
Q ss_pred HHHhcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHH--H--HHHHhCCCC
Q 007998 302 QMGRAGVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA--C--DIVKSVSMG 376 (582)
Q Consensus 302 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~--~~~~~~~~~ 376 (582)
+..+ +.||.+ .-.....++.+.|++.++-.+++.+-+....|++ +. .-.+.+.|+.... . +-++.| +
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdta~dRlkRa~~L~sl--k 325 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDTALDRLKRAKKLESL--K 325 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCcHHHHHHHHHHHHhc--C
Confidence 4443 577764 3444566888999999999999999886544543 32 2234556653322 1 123333 4
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc-CCchHHHHHHHHHHh
Q 007998 377 T-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY-ERWDDVGRVRKAMKN 441 (582)
Q Consensus 377 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 441 (582)
| +..+--.+..+....|++..|..-.+.+....| ..+.|.+|.++-... |+-.++++.+-+..+
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4 566777778888899999999999999999999 557899999887644 988888887765543
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.29 E-value=0.0053 Score=58.95 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA-CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 254 (582)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 45555665555555666666666665433 2233333333332 22234445566666666554 34455556666666
Q ss_pred HHhcCCHHHHHHHHhccc-CCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 255 YAKCGLLDKAFEVFDNIK-CRK----SLVTWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 255 y~~~g~~~~A~~~~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
+.+.|+.+.|+.+|++.. .-+ ....|...+.-=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666543 111 123555555555555555555555555554
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.27 E-value=0.00068 Score=51.77 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=36.0
Q ss_pred CCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHH
Q 007998 290 HGDGPRALELFEQMGRAGV-KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368 (582)
Q Consensus 290 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 368 (582)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555666666666555321 11223333345555555666666555555 22110 111222233455555555555555
Q ss_pred HHH
Q 007998 369 IVK 371 (582)
Q Consensus 369 ~~~ 371 (582)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.26 E-value=0.026 Score=48.59 Aligned_cols=132 Identities=9% Similarity=-0.019 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC---CHHHHH
Q 007998 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT---DMVLWQ 383 (582)
Q Consensus 308 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~ 383 (582)
..|+...-..|..+....|+..+|...|++...--+.-|....-.+..+....+++.+|...++++ ...| ++...-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 356666666777888888888888888888776333456666667777777888888888888776 2222 233344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 384 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
.+...+...|+++.|+..|+.++.--| ++..-......+.++|+.+++..-+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 566788889999999999999999887 55666778888999998887765444443
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.22 E-value=0.11 Score=48.67 Aligned_cols=67 Identities=7% Similarity=-0.118 Sum_probs=41.2
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHH---HHHHHHHhccCCcHHHHHHHHHHHHcCC
Q 007998 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV---LGALAACGHLGAWKEGDKIHEYIREERL 241 (582)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~---~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 241 (582)
+...+-.....+.+.|++++|++.|+++...- +-+..+. ..+..++.+.+++++|...+++.++..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 33334444555667788888888888877653 2222222 3445566777777777777777776543
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.19 E-value=0.00041 Score=50.50 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=30.5
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998 359 RAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416 (582)
Q Consensus 359 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 416 (582)
..|++++|.++|+++ ...| +...+..+..+|...|++++|..+++++...+|+++..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 345555555555554 2223 455555555566666666666666666666655544333
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.0037 Score=60.16 Aligned_cols=256 Identities=12% Similarity=0.026 Sum_probs=153.8
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCCHHH----HHHHHHHHhccCCcHHHHHHHHHHHH----cCCC-CchhHHHHHHH
Q 007998 183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVT----VLGALAACGHLGAWKEGDKIHEYIRE----ERLD-MNVVVCNAVID 253 (582)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~ 253 (582)
-+++.|+....+.+|+..++.| ..|..| |..+.++|.-++++++|.++|..=+- .|-. -.......|.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3678888888888888888887 455444 55566778888888888888764221 1100 01112223344
Q ss_pred HHHhcCCHHHHHHHHhc-c------c-CCCCHHHHHHHHHHHHhCCC--------------------hhHHHHHHHHHHh
Q 007998 254 MYAKCGLLDKAFEVFDN-I------K-CRKSLVTWNTMVMAFAVHGD--------------------GPRALELFEQMGR 305 (582)
Q Consensus 254 ~y~~~g~~~~A~~~~~~-~------~-~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~ 305 (582)
.+--.|.+++|.-.-.+ + . .......+..+...|...|+ ++.|.+.|.+=.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44445566665432211 1 1 00122334445555544332 2233444433111
Q ss_pred ----cCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH----cCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC--
Q 007998 306 ----AGVK-PDDVSYLAALCACNHAGLVDDGVRLFNSMAN----CGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-- 373 (582)
Q Consensus 306 ----~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 373 (582)
.|-. .-...|..|...|.-.|+++.|+...+.-.. +|-.. ....+..+..++.-.|+++.|.+.|+..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1100 0113455566666667889999887765433 33222 2356777888888899999999888743
Q ss_pred -----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C--CCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 374 -----SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKLVEM----G--SNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 374 -----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
+.+ ....+-.+|.+.|.-..+++.|+..+.+-+.. + .....++.+|+++|...|..+.|..+.+.-.
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 211 24456667888888888899999988875442 2 2345789999999999999999988876554
No 183
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.18 E-value=0.32 Score=49.10 Aligned_cols=414 Identities=12% Similarity=0.072 Sum_probs=232.6
Q ss_pred ccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC--CCChhHHHHHHHHHHc-CCCchH
Q 007998 16 AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN--APSTNDFNAVLRGLAH-SSKPTN 91 (582)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~-~g~~~~ 91 (582)
.+..+..|...++++..= |+....|..-|..-.+ .+++...++|.+.- .-++..|..-|+---+ +|+...
T Consensus 32 t~~~~~~R~~YEq~~~~F------P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~ 105 (656)
T KOG1914|consen 32 TQPIDKVRETYEQLVNVF------PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFG 105 (656)
T ss_pred cCCHHHHHHHHHHHhccC------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcch
Confidence 445677888888886532 2222224566666556 99999999999864 3478889888865433 233333
Q ss_pred ----HHHHHHHHH-hCCCCCChh-HHHHHH---HH------HHhcCChHHHHHHHHHHHHcCCCCchHHHHH------HH
Q 007998 92 ----AVLWYRQML-RGSHRSDAL-TCSFAL---KA------CARVLALFETLQIHSHVLRHGFLADALLGTT------LL 150 (582)
Q Consensus 92 ----A~~~~~~m~-~~g~~p~~~-~~~~ll---~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~------li 150 (582)
-.+.|+-.+ +-|..+-.. .|+.-+ .. +....+++..+.+++.++..-+..=...|+- =|
T Consensus 106 ~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~I 185 (656)
T KOG1914|consen 106 YREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEI 185 (656)
T ss_pred HHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHH
Confidence 233343333 345444332 333333 32 2233456667777877765432211122221 11
Q ss_pred HHH-------HhcCCHHHHHHHHhhcCC------C---------------ChhHHHHHHHHHHhCCCh--------hHHH
Q 007998 151 DVY-------AKVGEIVSAKKVFDEMGV------R---------------DIASWNALIAGLAQGNLA--------SEAV 194 (582)
Q Consensus 151 ~~y-------~~~g~~~~A~~~f~~m~~------~---------------~~~~~~~li~~~~~~g~~--------~~A~ 194 (582)
+.. -+...+-.|+++++++.. + .+..|-.+|.-=..++-- ....
T Consensus 186 N~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~ 265 (656)
T KOG1914|consen 186 NIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVM 265 (656)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence 111 122345556666655420 0 112354444422211111 1112
Q ss_pred HHHHHH-HHcCCCCCCHHH-HH----HHHHHHhccCC-------cHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--
Q 007998 195 DLFKRM-KMEGVFKPNEVT-VL----GALAACGHLGA-------WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG-- 259 (582)
Q Consensus 195 ~~~~~m-~~~g~~~pd~~t-~~----~ll~a~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-- 259 (582)
-.+++. .--+. .|+..- +. ..-..+...|+ -+++..+++..+..-...+..+|..+.+.--..-
T Consensus 266 yayeQ~ll~l~~-~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~ 344 (656)
T KOG1914|consen 266 YAYEQCLLYLGY-HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDD 344 (656)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhccc
Confidence 222222 22233 333221 11 11122333343 3455556665554433334445544443221111
Q ss_pred -CHHHHHHHHhccc---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHH
Q 007998 260 -LLDKAFEVFDNIK---CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRL 334 (582)
Q Consensus 260 -~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 334 (582)
..+.....++++. ...-..+|..++..-.+..-.+.|..+|.+..+.+..+ +.....+++.-++ .++.+-|.++
T Consensus 345 n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 345 NKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred chhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 2344444554443 12233467778888888888999999999999998888 4556667776554 6899999999
Q ss_pred HHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007998 335 FNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV---SMGT--DMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408 (582)
Q Consensus 335 ~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 408 (582)
|+.=.+ +| -+..--...++-+...++-..|..+|++. .+.| ...+|..++.--..-|++..+.++-++....
T Consensus 424 FeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 424 FELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 998776 54 23344456788888999999999999987 2233 4689999999999999999999999998876
Q ss_pred CCCC----chhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998 409 GSNN----CGDFVLLSNLYAAYERWDDVGRVRKAM 439 (582)
Q Consensus 409 ~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 439 (582)
-|.+ ...-..+.+.|.-.+.+..-..=++.|
T Consensus 502 f~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 502 FPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred cchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 6522 123345666666666655444444433
No 184
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.16 E-value=0.008 Score=47.23 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=61.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHhHcCCccChhhH
Q 007998 280 WNTMVMAFAVHGDGPRALELFEQMGRAGV-KPDDVSYLAALCACNHAG--------LVDDGVRLFNSMANCGVKPNMKHY 350 (582)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~ 350 (582)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-....+|+.|...+++|+.++|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666667888888899999998888 889999999888776532 244567788888887888888888
Q ss_pred HhhhhHHhh
Q 007998 351 GSVVDLLGR 359 (582)
Q Consensus 351 ~~li~~~~~ 359 (582)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888876654
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.16 E-value=0.08 Score=49.53 Aligned_cols=175 Identities=10% Similarity=0.052 Sum_probs=103.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhccc-CCCCH-HH---HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 007998 250 AVIDMYAKCGLLDKAFEVFDNIK-CRKSL-VT---WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324 (582)
Q Consensus 250 ~li~~y~~~g~~~~A~~~~~~~~-~~~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 324 (582)
.....+.+.|++++|.+.|+.+. ..|+. .. .-.++.+|.+.+++++|...|++..+.-..-...-+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 34455566788888888888765 12322 22 234566778888888888888888774211112333333333321
Q ss_pred --C---------------CCH---HHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 007998 325 --A---------------GLV---DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT 384 (582)
Q Consensus 325 --~---------------g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 384 (582)
. .+. ..|...|+.+++ -|=...-..+|...+..+...--..- -.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 1 111 233344444443 22223333444443333311000001 13
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 385 LLGACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 385 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
+..-|.+.|.+..|..-++.+++.-|+. +.+...+..+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4456888999999999999999988764 4577789999999999999999887664
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.14 E-value=0.045 Score=55.92 Aligned_cols=50 Identities=24% Similarity=0.444 Sum_probs=31.5
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998 131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201 (582)
Q Consensus 131 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 201 (582)
++.+.++|-.|+... +...++-.|.+.+|-++|.+ +|....|+++|..|+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLR 672 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHH
Confidence 344566676666543 44566777888888888765 455556666665553
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.29 Score=47.63 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007998 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY 392 (582)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 392 (582)
.+.+.-+.-|...|+...|.++-.+. . .|+..-|...+.+|+..++|++-.++... +.++..|..++.+|...
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 35555666777888888887775554 3 48888899999999999999998887654 33567899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 007998 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437 (582)
Q Consensus 393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 437 (582)
|+..+|.....++ .+..-..+|.++|+|.+|.+.--
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 9999998888772 22566788899999999987643
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.11 E-value=0.021 Score=59.54 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcC--------CCHHHHHHHHHHHh
Q 007998 274 RKSLVTWNTMVMAFAVHG-----DGPRALELFEQMGRAGVKPDD-VSYLAALCACNHA--------GLVDDGVRLFNSMA 339 (582)
Q Consensus 274 ~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 339 (582)
+.|...|...+.+..... +.+.|+.+|++..+. .||. ..+..+..++... .++..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 568889999998865432 367999999999984 6775 3455444433221 12334444444443
Q ss_pred Hc-CCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998 340 NC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414 (582)
Q Consensus 340 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 414 (582)
.. ....+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|.+.++++..++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 31 23345567777777777789999999999987 67789889999999999999999999999999999998874
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.10 E-value=0.02 Score=55.10 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHh
Q 007998 76 FNAVLRGLAHSSKPTNAVLWYRQMLR 101 (582)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~m~~ 101 (582)
|+.....|-..|++++|.+.|.+..+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34556677777888888888877643
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.09 E-value=0.0072 Score=47.48 Aligned_cols=81 Identities=12% Similarity=0.042 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCchHH
Q 007998 75 DFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVL--------ALFETLQIHSHVLRHGFLADALL 145 (582)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 145 (582)
+-...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. .+-..+.+|+.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334566677777999999999999999999 999999999999887542 23456788999999999999999
Q ss_pred HHHHHHHHHh
Q 007998 146 GTTLLDVYAK 155 (582)
Q Consensus 146 ~~~li~~y~~ 155 (582)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.06 E-value=0.019 Score=57.57 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhccc---CCCCHHHHH
Q 007998 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREER--LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK---CRKSLVTWN 281 (582)
Q Consensus 207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 281 (582)
+.+...+..+++.+....+++.+..++-+..... ...-..+..++|+.|.+.|..+++..++..=. .=||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 6778888888888888888899988888877652 22234455689999999999999999987533 458999999
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 007998 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325 (582)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 325 (582)
.|+..+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998887777778887777777665
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.04 E-value=0.021 Score=46.50 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=66.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC--chhHHHHHHHHH
Q 007998 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPN--EVTVLGALAACGHLGAWKEGDKIHEYIREERLDM--NVVVCNAVIDMY 255 (582)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~m~~~g~~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y 255 (582)
+..++-..|+.++|+.+|++....|. ..+ ...+..+.+++...|++++|..+++........+ +..+...+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 45567778888888888888888775 433 2356667777788888888888888777653221 122222334456
Q ss_pred HhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHH
Q 007998 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288 (582)
Q Consensus 256 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~ 288 (582)
...|+.++|.+.+-... -++...|.--|..|+
T Consensus 86 ~~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL-AETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 66777777777765544 344445554444443
No 193
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.02 E-value=0.013 Score=58.64 Aligned_cols=120 Identities=10% Similarity=0.007 Sum_probs=94.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHc--CCccChhhHHhhhhHHhhcCCHHHHHHHHHhC---CCCCCHHH
Q 007998 307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC--GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV---SMGTDMVL 381 (582)
Q Consensus 307 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~ 381 (582)
+.+.+...+..+++.+....+++++..++.+.... ....-..+..++|+.|...|..++++++++.= |+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557778888888888888899999888888772 22222334458999999999999999999753 88899999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHhc
Q 007998 382 WQTLLGACQLYGDVEMAEIASRKLVEMG-SNNCGDFVLLSNLYAAY 426 (582)
Q Consensus 382 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 426 (582)
++.|+..+.+.|++..|.+++..|...+ .+++.++.+-..++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988877665 56777777666666555
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.01 E-value=0.0012 Score=48.21 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=50.8
Q ss_pred hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCC
Q 007998 347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYG-DVEMAEIASRKLVEMGS 410 (582)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 410 (582)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456667777788888888888888765 4445 5778888888888888 79999999999998887
No 195
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.99 E-value=0.017 Score=50.87 Aligned_cols=81 Identities=6% Similarity=-0.146 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 007998 73 TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSD--ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150 (582)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 150 (582)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|.+.++.+++.. +.....++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 44667777777788888888888888876533321 2467777777888888888888888887663 22344455555
Q ss_pred HHHH
Q 007998 151 DVYA 154 (582)
Q Consensus 151 ~~y~ 154 (582)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 196
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.0071 Score=53.70 Aligned_cols=89 Identities=22% Similarity=0.289 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----------------CCCHHHHH
Q 007998 274 RKSLVTWNTMVMAFAVH-----GDGPRALELFEQMGRAGVKPDDVSYLAALCACNH----------------AGLVDDGV 332 (582)
Q Consensus 274 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----------------~g~~~~a~ 332 (582)
.+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+ -.+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 45666666666666543 4555555666777777777777777777776543 23346688
Q ss_pred HHHHHHhHcCCccChhhHHhhhhHHhhcCC
Q 007998 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362 (582)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 362 (582)
+++++|..+|+-||.+++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 889999889999999999988888887664
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.11 Score=47.52 Aligned_cols=236 Identities=12% Similarity=0.006 Sum_probs=147.8
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHH-HhcCC-hH-HHHHHHHHHHHcCCCCchHHHHH
Q 007998 72 STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC-ARVLA-LF-ETLQIHSHVLRHGFLADALLGTT 148 (582)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~-~~-~a~~~~~~~~~~g~~~~~~~~~~ 148 (582)
...-|+.-+..+++....++|..-++...+.+ .||-+ |..-=..+ .+.|. +. ..+-+|..+.+.- |+ -+++
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l--gn--pqes 141 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYL--GN--PQES 141 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhc--CC--cHHH
Confidence 44568888888888888888776666554322 12210 00000000 01111 11 1223444443321 11 2556
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC----------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007998 149 LLDVYAKVGEIVSAKKVFDEMGVR----------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218 (582)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~ 218 (582)
|+..|.-..-+++-...|+.-..+ -...-+.++..+.-.|.+.-.+.++++.++... +.++...+.+++
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~-e~~p~L~s~Lgr 220 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP-EQEPQLLSGLGR 220 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC-cccHHHHHHHHH
Confidence 666666555555555555443322 223456777778888899999999999998876 778888889999
Q ss_pred HHhccCCcHHHHHHHHHHHHcCCCCch-----hHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCC
Q 007998 219 ACGHLGAWKEGDKIHEYIREERLDMNV-----VVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHG 291 (582)
Q Consensus 219 a~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g 291 (582)
.-.+.|+.+.|..+|+.+.+..-..+. .+.......|.-.+++..|...|+++. .+.|++.-|.-.-+..-.|
T Consensus 221 ~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 221 ISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 999999999999999988765333333 333344455667788889999998776 3456666666666666688
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHH
Q 007998 292 DGPRALELFEQMGRAGVKPDDVSYL 316 (582)
Q Consensus 292 ~~~~A~~~~~~m~~~g~~p~~~t~~ 316 (582)
+..+|++..+.|... .|...+-.
T Consensus 301 ~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHhcc--CCccchhh
Confidence 999999999999875 45544433
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.91 E-value=0.0041 Score=45.85 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=52.7
Q ss_pred hhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998 354 VDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417 (582)
Q Consensus 354 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 417 (582)
-..|.+.+++++|.++++.+ ...| +...|......+...|+++.|.+.++++++.+|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 35678899999999999887 4445 6777888888999999999999999999999997765443
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.90 E-value=0.00096 Score=40.60 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=30.7
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHH
Q 007998 402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434 (582)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 434 (582)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.89 E-value=0.007 Score=57.09 Aligned_cols=93 Identities=11% Similarity=0.005 Sum_probs=52.9
Q ss_pred HHhhhhHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---chhHHHHHH
Q 007998 350 YGSVVDLLGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLLSN 421 (582)
Q Consensus 350 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 421 (582)
|..-+..+.+.|++++|...|+.+ ...|+ ...+.-+...|...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333334444456666666655554 22222 2344455566666677777777777776665543 344455566
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007998 422 LYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 422 ~~~~~g~~~~a~~~~~~m~~~ 442 (582)
+|...|++++|..+++...+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666667777777777666544
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.87 E-value=0.19 Score=43.50 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=47.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHH
Q 007998 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-----RDIASWNA 179 (582)
Q Consensus 105 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~ 179 (582)
-|+...-..|..+....|+..+|...|++...--+..|..+.-.+.++....++...|...++.+.+ +...+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444445555555555555555555555443444555555555555555555555555444321 11222233
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc
Q 007998 180 LIAGLAQGNLASEAVDLFKRMKME 203 (582)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~m~~~ 203 (582)
+.+.|.-.|++.+|..-|+.....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 344444444444444444444433
No 202
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.8 Score=48.24 Aligned_cols=339 Identities=12% Similarity=0.031 Sum_probs=182.5
Q ss_pred HHHcCCCchHHHHHHHHH--------HhCCCCCChhHHHH-----HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHH
Q 007998 82 GLAHSSKPTNAVLWYRQM--------LRGSHRSDALTCSF-----ALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148 (582)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m--------~~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 148 (582)
++.+..++++-+.+-+.. ..-|++.+..-|.. +++-+...+.+..|.++-..+-..-..- ..++..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 334445555544444333 23455555544443 3445556677777777766653221111 456666
Q ss_pred HHHHHHhcCC---HHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CCHHHHHHHHHHH
Q 007998 149 LLDVYAKVGE---IVSAKKVFDEMGV--RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK---PNEVTVLGALAAC 220 (582)
Q Consensus 149 li~~y~~~g~---~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---pd~~t~~~ll~a~ 220 (582)
...-+.+..+ -+.+.++-+++.. .+.++|..+.+-.-+.|+.+-|..+++.=...+..- .+-.-+...+.-+
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 6666666632 3344445455554 456678888877778888888877765422221100 0112344555666
Q ss_pred hccCCcHHHHHHHHHHHHcC-----------CCCchhHHHHHHH--------HHHhcCCHHHHHHHHh--ccc----CCC
Q 007998 221 GHLGAWKEGDKIHEYIREER-----------LDMNVVVCNAVID--------MYAKCGLLDKAFEVFD--NIK----CRK 275 (582)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~li~--------~y~~~g~~~~A~~~~~--~~~----~~~ 275 (582)
...|+.+....++-.+...- .+.....|.-++. .+.+.++..++...|. ... ..+
T Consensus 557 ies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~ 636 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEG 636 (829)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcc
Confidence 67777777666665554321 1111222222221 0111222222222221 100 011
Q ss_pred CHHHHHHHHHHHHhCCC---hhHH-------HHHHHHHHh-cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCc
Q 007998 276 SLVTWNTMVMAFAVHGD---GPRA-------LELFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK 344 (582)
Q Consensus 276 ~~~~~~~li~~~~~~g~---~~~A-------~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 344 (582)
-.........++++... .++| +++.+.+.. .|..-...|.+--+.-+...|+..+|.++-.+.. -
T Consensus 637 r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----i 712 (829)
T KOG2280|consen 637 RIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----I 712 (829)
T ss_pred cchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----C
Confidence 11122223334444332 1111 222222222 2223334455556666777888888888766655 4
Q ss_pred cChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 345 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
||...|-.-+.+++..+++++-+++-++.. .+.-|.-+..+|.+.|+.++|.+.+-+.-. +.-...+|.
T Consensus 713 pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~ 781 (829)
T KOG2280|consen 713 PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYL 781 (829)
T ss_pred cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHH
Confidence 788888777888888888888888777663 245677778888888888888877765421 225677888
Q ss_pred hcCCchHHHHHH
Q 007998 425 AYERWDDVGRVR 436 (582)
Q Consensus 425 ~~g~~~~a~~~~ 436 (582)
+.|++.+|.++-
T Consensus 782 ~~~~~~eAad~A 793 (829)
T KOG2280|consen 782 RVGDVKEAADLA 793 (829)
T ss_pred HhccHHHHHHHH
Confidence 888888887754
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.85 E-value=0.034 Score=45.29 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=57.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chHHHHHHHHHHH
Q 007998 79 VLRGLAHSSKPTNAVLWYRQMLRGSHRSD--ALTCSFALKACARVLALFETLQIHSHVLRHGFLA--DALLGTTLLDVYA 154 (582)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~ 154 (582)
+...+-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++......+.+ +..+...+.-.+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566777777777777777665543 2345556666677777777777777766542210 1222222334555
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 007998 155 KVGEIVSAKKVFDEMGVRDIASWNALIA 182 (582)
Q Consensus 155 ~~g~~~~A~~~f~~m~~~~~~~~~~li~ 182 (582)
..|+.++|.+.+-....++...|.--|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666654433333333333333
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.79 Score=47.79 Aligned_cols=131 Identities=10% Similarity=-0.005 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhC-CCCCChhHHHHH-------HHHHHhcCChHHHHH
Q 007998 58 LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFA-------LKACARVLALFETLQ 129 (582)
Q Consensus 58 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l-------l~~~~~~~~~~~a~~ 129 (582)
+++|.+..+.- |.+..|..|.......-.++-|...|-+.... |++.-. -...+ ....+-.|.+++|++
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vk-rl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVK-RLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHH-HhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 45555555443 45567877777666666667777777665432 332100 00111 011223477888888
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-----DIASWNALIAGLAQGNLASEAVDLFKRM 200 (582)
Q Consensus 130 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m 200 (582)
++-.+-++. ..|.++.+.||+-...++++.-... -..+|+.+...++....|++|.+.|..-
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 876665543 2466777788887777777654321 1346777777666666676666666543
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.77 E-value=0.0029 Score=41.25 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421 (582)
Q Consensus 380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 421 (582)
.+|..+..+|...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999988877754
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.76 E-value=0.2 Score=49.23 Aligned_cols=161 Identities=19% Similarity=0.160 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhcccCCCC------HHHHHHHHHHHHh---CCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998 250 AVIDMYAKCGLLDKAFEVFDNIKCRKS------LVTWNTMVMAFAV---HGDGPRALELFEQMGRAGVKPDDVSYLAALC 320 (582)
Q Consensus 250 ~li~~y~~~g~~~~A~~~~~~~~~~~~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (582)
.++-.|....+++...++++.+...|+ ...--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 444456677777777777776651221 1111223344455 6777777777777555555666666666665
Q ss_pred HHHc---------CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCC-HH---HHHHHH---HhC-------CCCC
Q 007998 321 ACNH---------AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR-LQ---EACDIV---KSV-------SMGT 377 (582)
Q Consensus 321 a~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~A~~~~---~~~-------~~~p 377 (582)
.|-. ....++|...|.+.-+ +.|+...--.++..+...|. .+ +..++- ... .-..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5432 2235566666665544 33443322222223333332 11 222221 111 1123
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
|--.+.+++.++.-.|+.+.|.+.++++.++.|+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 55666789999999999999999999999998754
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.65 E-value=0.0088 Score=59.37 Aligned_cols=64 Identities=13% Similarity=-0.100 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch---hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG---DFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
+...|+.+..+|...|++++|+..|+++++++|++.. +|..++.+|...|+.++|...+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555442 255555555555555555555555444
No 208
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.59 Score=45.73 Aligned_cols=45 Identities=16% Similarity=-0.037 Sum_probs=21.3
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007998 84 AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ 129 (582)
Q Consensus 84 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 129 (582)
-+..++.+|+..+....+..+. +..-|..-+..+...++++++.-
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~ 104 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALG 104 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhccc
Confidence 3344555666666666554322 22233333444444555555443
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.50 E-value=0.077 Score=45.33 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=72.2
Q ss_pred HHcCCCHHHHHHHHHHHhH-c-CCc-cChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 007998 322 CNHAGLVDDGVRLFNSMAN-C-GVK-PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398 (582)
Q Consensus 322 ~~~~g~~~~a~~~~~~~~~-~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 398 (582)
....++.+.+...+.++.. + |.- |+... ..-.......+++.- ......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3556788888888888877 3 311 11111 111222223333321 23566777888899999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
...+++++..+|-+...|..++.+|...|+..+|.++++++.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.44 E-value=0.052 Score=51.25 Aligned_cols=98 Identities=16% Similarity=0.093 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHH
Q 007998 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV----SMGT-DMVLWQT 384 (582)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ 384 (582)
.|...+....+.|++++|...|+.+.+.- |+ ...+-.+...|...|++++|...|+.+ |..| ....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444445566777777777666621 22 234445667777777777777777665 2222 2445555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998 385 LLGACQLYGDVEMAEIASRKLVEMGSNNC 413 (582)
Q Consensus 385 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 413 (582)
+...+...|+.+.|...++++++..|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 66677788999999999999999988764
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.44 E-value=0.28 Score=44.62 Aligned_cols=165 Identities=12% Similarity=0.068 Sum_probs=84.9
Q ss_pred HHHHHHhcCCHHHHHHHHhccc-CCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHH
Q 007998 251 VIDMYAKCGLLDKAFEVFDNIK-CRK----SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD--VSYLAALCACN 323 (582)
Q Consensus 251 li~~y~~~g~~~~A~~~~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 323 (582)
....+...|++++|.+.|+.+. .-| -..+.-.++.++.+.|++++|...|++..+. -|+. .-+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHH
Confidence 3344555666666666666654 011 1234445566667777777777777776653 2322 12222222211
Q ss_pred c-------------CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007998 324 H-------------AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390 (582)
Q Consensus 324 ~-------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 390 (582)
. .+...+|...|+.++ .-|=......+|...+..+...- ..---.+..-|.
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~ 152 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1 111223333343333 33333334444544443331000 001112456688
Q ss_pred hcCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHhcCCchHHH
Q 007998 391 LYGDVEMAEIASRKLVEMGSNNC---GDFVLLSNLYAAYERWDDVG 433 (582)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 433 (582)
+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.+.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999988754 35678888899999887444
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.43 E-value=0.7 Score=41.98 Aligned_cols=61 Identities=16% Similarity=-0.022 Sum_probs=33.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc
Q 007998 179 ALIAGLAQGNLASEAVDLFKRMKMEGVF-KPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239 (582)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 239 (582)
.....+.+.|++.+|++.|+.+...-.. +--......++.++.+.|+++.|...++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444556677777777777777655210 111234445556666666777776666666654
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.28 E-value=0.49 Score=48.81 Aligned_cols=80 Identities=10% Similarity=0.016 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHH
Q 007998 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288 (582)
Q Consensus 209 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~ 288 (582)
+..+...+..-+-+...+..|.++|..|-+. ..++++....+++.+|..+-++.+ +--...|-....-++
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP-e~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP-EFKDDVYMPYAQWLA 815 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc-cccccccchHHHHhh
Confidence 3445555555556667778888888776432 357788888899999999988887 322223333333444
Q ss_pred hCCChhHHHH
Q 007998 289 VHGDGPRALE 298 (582)
Q Consensus 289 ~~g~~~~A~~ 298 (582)
...++++|.+
T Consensus 816 E~DrFeEAqk 825 (1081)
T KOG1538|consen 816 ENDRFEEAQK 825 (1081)
T ss_pred hhhhHHHHHH
Confidence 4555555443
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.25 E-value=1.3 Score=43.17 Aligned_cols=304 Identities=14% Similarity=0.063 Sum_probs=192.0
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHc--CCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHH--hcCChHHHHHHH
Q 007998 56 NELAYAHALFRQINAPSTNDFNAVLRGLAH--SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA--RVLALFETLQIH 131 (582)
Q Consensus 56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~ 131 (582)
.+...+.+.|..-.. -..|.+|-.++.- .|+-..|.++-.+-.+. +..|...+..++.+-+ -.|+.+.|++-|
T Consensus 67 ~sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kf 143 (531)
T COG3898 67 ESPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKF 143 (531)
T ss_pred hCcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHH
Confidence 466667777765432 2356666666543 46666777666655432 4556666777775543 568999999999
Q ss_pred HHHHHcCCCCchHH--HHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 007998 132 SHVLRHGFLADALL--GTTLLDVYAKVGEIVSAKKVFDEMGV--R-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206 (582)
Q Consensus 132 ~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 206 (582)
+.|... |.... ...|.-.--+.|+.+.|+..-+.... | -...|.+.+...+..|+|+.|+++++.-+...++
T Consensus 144 eAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi 220 (531)
T COG3898 144 EAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI 220 (531)
T ss_pred HHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 988643 22221 22233333467888888877766542 2 3457888888999999999999999888776655
Q ss_pred CCCHHH--HHHHHHHHh--cc-CCcHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHHH
Q 007998 207 KPNEVT--VLGALAACG--HL-GAWKEGDKIHEYIREERLDMNVV-VCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVT 279 (582)
Q Consensus 207 ~pd~~t--~~~ll~a~~--~~-~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~ 279 (582)
.+|..- -..++.+-+ .. .+...|+..-.+..+. .||.. .--.-..+|.+.|++.++-.+++.+- .+|-...
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 666542 223333222 11 2455566555555543 44432 22234567889999999999998774 3454444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHH
Q 007998 280 WNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357 (582)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 357 (582)
|. .|....-.+.++.-+++... ..++||. .+...+..+-...|++..|..--+.... ..|....|..|.+.-
T Consensus 299 a~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIe 372 (531)
T COG3898 299 AL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIE 372 (531)
T ss_pred HH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHH
Confidence 43 34444444556655555543 2356665 4666777788888998888776655554 568888888888775
Q ss_pred hh-cCCHHHHHHHHHhC
Q 007998 358 GR-AGRLQEACDIVKSV 373 (582)
Q Consensus 358 ~~-~g~~~~A~~~~~~~ 373 (582)
.. .|+-.++...+-+.
T Consensus 373 eAetGDqg~vR~wlAqa 389 (531)
T COG3898 373 EAETGDQGKVRQWLAQA 389 (531)
T ss_pred hhccCchHHHHHHHHHH
Confidence 54 48888998888765
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.25 E-value=0.037 Score=53.54 Aligned_cols=259 Identities=13% Similarity=0.022 Sum_probs=159.5
Q ss_pred HHHHcCCCchHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHH----cCC-CCchHHHHHHHH
Q 007998 81 RGLAHSSKPTNAVLWYRQMLRGSHRSDA----LTCSFALKACARVLALFETLQIHSHVLR----HGF-LADALLGTTLLD 151 (582)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~li~ 151 (582)
.-+++.|+++..+.+|+..++.|.. |. ..|..|-++|.-.+++++|.+.|..=+. .|- .-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478899999999999999987754 43 3466667788888899999988754221 110 011222334455
Q ss_pred HHHhcCCHHHHHHHHh-hc------CCC--ChhHHHHHHHHHHhCCCh--------------------hHHHHHHHHHH-
Q 007998 152 VYAKVGEIVSAKKVFD-EM------GVR--DIASWNALIAGLAQGNLA--------------------SEAVDLFKRMK- 201 (582)
Q Consensus 152 ~y~~~g~~~~A~~~f~-~m------~~~--~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~- 201 (582)
.+--.|.+++|.-.-. .+ ..+ ...++..+...|...|+. +.|.++|.+=+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 5555677777654322 11 111 223455566666555431 23444443321
Q ss_pred ---HcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHH----cCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccc-
Q 007998 202 ---MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE----ERLD-MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK- 272 (582)
Q Consensus 202 ---~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~- 272 (582)
..|---.-...|..+.+.|.-+|+++.|...|+.-+. -|-. .....+..|.++|.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1111001113456666666677889999988876442 2211 234567778889999999999999887532
Q ss_pred -----CCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHh----cC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998 273 -----CRK--SLVTWNTMVMAFAVHGDGPRALELFEQMGR----AG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340 (582)
Q Consensus 273 -----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 340 (582)
-.+ ...+..+|...|.-..++++|+.++.+-.. .+ ..-....+-+|..++...|..++|..+.+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 122 234566788888888899999988876432 11 122345777888999999999998887766655
No 216
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.14 E-value=2.6 Score=45.61 Aligned_cols=157 Identities=13% Similarity=0.037 Sum_probs=100.6
Q ss_pred HHHHhcCCC-CCHHHHHHHHhcCCC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC-
Q 007998 47 IEFYALSPL-NELAYAHALFRQINA--PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL- 122 (582)
Q Consensus 47 ~~li~~y~~-g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~- 122 (582)
..|...|.. |..++|..++++... |+..-...+.-+|+|.+++.+-.+.--+|.+. .+-+.+.|-++++...+.-
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhcc
Confidence 477777877 999999999999864 55555556666788877776533333333332 3446677778877765431
Q ss_pred C---------hHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCHHHHHHHHhh-----cCCCChhHHHHHHHHHHhC
Q 007998 123 A---------LFETLQIHSHVLRHG-FLADALLGTTLLDVYAKVGEIVSAKKVFDE-----MGVRDIASWNALIAGLAQG 187 (582)
Q Consensus 123 ~---------~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-----m~~~~~~~~~~li~~~~~~ 187 (582)
. +..|....+.+++.+ ..-+..-.-.-.......|..++|.+++.. ...-+...-|--+..+...
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 1 233555666666544 111111111222345578889999998832 2233555556677888889
Q ss_pred CChhHHHHHHHHHHHcC
Q 007998 188 NLASEAVDLFKRMKMEG 204 (582)
Q Consensus 188 g~~~~A~~~~~~m~~~g 204 (582)
++|.+..++-.++...|
T Consensus 240 ~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKG 256 (932)
T ss_pred cChHHHHHHHHHHHHhC
Confidence 99999999999998886
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=2.4 Score=44.90 Aligned_cols=307 Identities=11% Similarity=0.012 Sum_probs=165.7
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-CCchHHHHHHHHHHH
Q 007998 77 NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH-GF-LADALLGTTLLDVYA 154 (582)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~y~ 154 (582)
..+|.-++..+.+..|+++-..+...-..- ...|.....-+.+..+.. -..+++.+.+. +. -.+...|..+..--.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCCceeHHHHHHHHH
Confidence 356677777788888888887774321121 345555555554442221 12222222221 11 133456777777777
Q ss_pred hcCCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC----------CCCCHHHHHHH
Q 007998 155 KVGEIVSAKKVFDEMGVR--------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGV----------FKPNEVTVLGA 216 (582)
Q Consensus 155 ~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~~pd~~t~~~l 216 (582)
.+|+.+-|.++++.=+.. +..-+..-+.-..+.|+.+-...++..|.+.-. .+.....|.-+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 889999999888653321 222344455556677777766666655543210 01111222222
Q ss_pred HH---------HHhccCCcHHHHHHHHHH---HH--cCCCCchhHHHHHHHHHHhcCCHHHH----------HHHHhccc
Q 007998 217 LA---------ACGHLGAWKEGDKIHEYI---RE--ERLDMNVVVCNAVIDMYAKCGLLDKA----------FEVFDNIK 272 (582)
Q Consensus 217 l~---------a~~~~~~~~~a~~~~~~~---~~--~~~~~~~~~~~~li~~y~~~g~~~~A----------~~~~~~~~ 272 (582)
+. .|....+......++-+- .+ .+..|+ .....+.+.+.....-. +++++.+.
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le 675 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE 675 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 22 122222222222222211 11 133333 33344455544431111 11222222
Q ss_pred C----CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChh
Q 007998 273 C----RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK 348 (582)
Q Consensus 273 ~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 348 (582)
. .-.-.+.+--+.-+...|+-.+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.... +.
T Consensus 676 ~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PI 745 (829)
T KOG2280|consen 676 DQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PI 745 (829)
T ss_pred HHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CC
Confidence 0 1112234445566677888888888877654 67888888888888888988887776655543 23
Q ss_pred hHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007998 349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRK 404 (582)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 404 (582)
-|.-.+..+.+.|+.+||.+++.+.+-.+ -...+|.+.|++.+|.+..-+
T Consensus 746 Gy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 746 GYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred CchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 34457788889999999999988875333 345566777777777665443
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.08 E-value=0.012 Score=44.03 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC---CchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 380 VLWQTLLGACQLYGDVEMAEIASRKLVEM----GSN---NCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
.+++.+...|...|++++|+..++++++. +++ ...++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777778888888888888877753 222 24466778888888888888888877654
No 219
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.01 E-value=1.9 Score=42.95 Aligned_cols=409 Identities=9% Similarity=0.023 Sum_probs=220.7
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcchhc---hHHHHHhcCCCCCHHHHHHHHhcCCCCC-hhHHHHHHHHH--HcCCCchH
Q 007998 18 SHIHIKQLQAHLTTTGQFQSKLFPVRS---KIIEFYALSPLNELAYAHALFRQINAPS-TNDFNAVLRGL--AHSSKPTN 91 (582)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~y~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~--~~~g~~~~ 91 (582)
+...+..++..+.+.--.. +++.. -.+.++++|-..+++..........+.. ...|-.|..++ -+.+.+..
T Consensus 21 ~~~esEkifskI~~e~~~~---~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~k 97 (549)
T PF07079_consen 21 KFQESEKIFSKIYDEKESS---PFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRK 97 (549)
T ss_pred hhhHHHHHHHHHHHHhhcc---hHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHH
Confidence 4677888888888754332 33210 0157888887655555554444332111 22344444433 36678888
Q ss_pred HHHHHHHHHhC--CCCC-----------ChhHH-HHHHHHHHhcCChHHHHHHHHHHHHcCC----CCchHHHHHHHHHH
Q 007998 92 AVLWYRQMLRG--SHRS-----------DALTC-SFALKACARVLALFETLQIHSHVLRHGF----LADALLGTTLLDVY 153 (582)
Q Consensus 92 A~~~~~~m~~~--g~~p-----------~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~y 153 (582)
|++.|..-... +-+| +.+.+ +..+..+...|.+.+|+.+++++...=+ .-+..+|+.++-++
T Consensus 98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlml 177 (549)
T PF07079_consen 98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLML 177 (549)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence 88888765543 2222 12222 3345667788999999999888876433 35778888887777
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC-------------------------------ChhHHHHHHHHHHH
Q 007998 154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN-------------------------------LASEAVDLFKRMKM 202 (582)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-------------------------------~~~~A~~~~~~m~~ 202 (582)
++.=-++.-......+ ..-|.-||..|.+.= +..--++++..-..
T Consensus 178 srSYfLEl~e~~s~dl----~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 178 SRSYFLELKESMSSDL----YPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred hHHHHHHHHHhccccc----ChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 7643222211111110 112233333332211 11111222222222
Q ss_pred cCCCCCCHHH-HHHHHHHHhccCCcHHHHHHHHHHHHcCCCC----chhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC
Q 007998 203 EGVFKPNEVT-VLGALAACGHLGAWKEGDKIHEYIREERLDM----NVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS 276 (582)
Q Consensus 203 ~g~~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~ 276 (582)
.-+ .|+... ...+.....+ +.+++..+-+.+....+.+ =...+..++....+.++...|.+.+.-+. ..|+
T Consensus 254 ~yv-~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 254 FYV-HPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hcc-CCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 333 555332 2333333333 6666666666555442211 13456667777778888888877776554 2344
Q ss_pred HHHHH-------HHHHHHHh----CCChhHHHHHHHHHHhcCCCCCHH-HHHHHHH---HHHcCCC-HHHHHHHHHHHhH
Q 007998 277 LVTWN-------TMVMAFAV----HGDGPRALELFEQMGRAGVKPDDV-SYLAALC---ACNHAGL-VDDGVRLFNSMAN 340 (582)
Q Consensus 277 ~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~---a~~~~g~-~~~a~~~~~~~~~ 340 (582)
...-. .+-+..+. .-+..+-+.+|.......+ |.. ....++. -+-+.|. -+.|..+++.+.+
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33111 12222221 1123344555555554432 332 1112222 2223444 7888888888887
Q ss_pred cCCccChhhHHhhh----hHHhhc---CC---HHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHH
Q 007998 341 CGVKPNMKHYGSVV----DLLGRA---GR---LQEACDIVKSVSMGT----DMVLWQTLLGA--CQLYGDVEMAEIASRK 404 (582)
Q Consensus 341 ~~~~~~~~~~~~li----~~~~~~---g~---~~~A~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~ 404 (582)
.. +-|...-|.+. ..|..+ .. +-+-+.++++.++.| +...-|.|..| +..+|++.++.-.-.-
T Consensus 409 ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 21 22333333222 122211 11 222334455666655 44555666654 4789999999988888
Q ss_pred HHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 405 LVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 405 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
+.+..| ++.+|..++-+.....++++|..++..+.
T Consensus 488 L~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 488 LTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999 88999999999999999999999998654
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.12 Score=50.46 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
.++..|...|.+.+++..|++...+.++++|+|.-+...-+.+|...|.++.|+..|+++.+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 3667778888999999999999999999999999999999999999999999999999988754
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.88 E-value=0.77 Score=37.41 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=83.4
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHH
Q 007998 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEA 366 (582)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 366 (582)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++..-+ +++. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3467777788888777653 2444555555444444444444555555444 3222 34444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 367 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
..-+-.++ .+.......+.+...+|+-+.-.++++.+.+.+..+|....-++++|.+.|+..++..++++.=++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444443 244455667788889999999999999998766668889999999999999999999999999888874
No 222
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.80 E-value=1.4 Score=40.00 Aligned_cols=197 Identities=17% Similarity=0.141 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320 (582)
Q Consensus 245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (582)
..........+...+.+..+...+.... .......+..+...+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444455555555555555555554432 123334455555555555666666666666554322221 11111112
Q ss_pred -HHHcCCCHHHHHHHHHHHhHcCC--ccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCC
Q 007998 321 -ACNHAGLVDDGVRLFNSMANCGV--KPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD--MVLWQTLLGACQLYGD 394 (582)
Q Consensus 321 -a~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~ 394 (582)
.+...|+++.+...+.+...... ......+......+...++.++|...+.+. ...++ ...+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45566666666666666644110 012222333333355566677777666655 22222 4566666666677777
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 395 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
++.+...+.......|.....+..+...+...|.++++...+......
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777654455556666666556677777666655543
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.79 E-value=0.014 Score=43.65 Aligned_cols=29 Identities=21% Similarity=0.046 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998 379 MVLWQTLLGACQLYGDVEMAEIASRKLVE 407 (582)
Q Consensus 379 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 407 (582)
..++..+...+...|++++|++.+++.++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44566666777777777777777777655
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.19 Score=47.15 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=42.9
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---cCCcHHHHHHHHHHHHcCCCCchhHHH
Q 007998 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH---LGAWKEGDKIHEYIREERLDMNVVVCN 249 (582)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (582)
|...|-.|...|...|++..|..-|.+..+.- ++|+..+..+..++.. .....++..+++++++... .|+....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHH
Confidence 45555555555555555555555555554443 3333333333333221 1233444445554444431 1333333
Q ss_pred HHHHHHHhcCCHHHHHHHHhcc
Q 007998 250 AVIDMYAKCGLLDKAFEVFDNI 271 (582)
Q Consensus 250 ~li~~y~~~g~~~~A~~~~~~~ 271 (582)
-|...+...|++.+|...++.|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHH
Confidence 3444444444444444444443
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=1.4 Score=40.02 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCCCchhHHHHHHHHHhcCCchHHHHHH
Q 007998 383 QTLLGACQLYGDVEMAEIASRKLVEM----GSNNCGDFVLLSNLYAAYERWDDVGRVR 436 (582)
Q Consensus 383 ~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 436 (582)
.+.+-.+....++..|++.++.--+. +|++..+...|+.+| ..|+.+++.++.
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33334444445666666666664432 244445555555554 345555555443
No 226
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.59 E-value=0.11 Score=42.77 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Q 007998 313 VSYLAALCACNHAGLVDDGVRLF 335 (582)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~~~ 335 (582)
.++..++.++++.|+++....+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i 25 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYI 25 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHH
Confidence 34445555555555555444444
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.57 E-value=0.079 Score=48.80 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=78.9
Q ss_pred CCHHHHHHHHhcCC--CCChhHHHHHHHHHHcC-----CCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC------
Q 007998 56 NELAYAHALFRQIN--APSTNDFNAVLRGLAHS-----SKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL------ 122 (582)
Q Consensus 56 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------ 122 (582)
..+-..+..|...+ ++|-.+|-+.+..+... +..+-.-..++.|.+.|+.-|..+|..||+.+-+-.
T Consensus 48 K~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nv 127 (406)
T KOG3941|consen 48 KSLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNV 127 (406)
T ss_pred ccccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHH
Confidence 35556677888887 78999999999888754 455666677889999999999999999998875432
Q ss_pred ----------ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 007998 123 ----------ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158 (582)
Q Consensus 123 ----------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 158 (582)
+-+-+..++++|...|+.||..+-..|++++++.+-
T Consensus 128 fQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224467778888888888888887778887777664
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.54 E-value=0.17 Score=41.67 Aligned_cols=48 Identities=8% Similarity=0.181 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhh
Q 007998 308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVD 355 (582)
Q Consensus 308 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 355 (582)
..|+..+..+++.+|+..+++..|.++.+...+ ++++.+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 456666666666666666666666666666666 555555555555544
No 229
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.54 E-value=0.13 Score=41.51 Aligned_cols=89 Identities=22% Similarity=0.225 Sum_probs=70.1
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC---chhHHHHHHHHHhcCCc
Q 007998 356 LLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG-SNN---CGDFVLLSNLYAAYERW 429 (582)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 429 (582)
+++..|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|+.-+++++++. |.. -.+|+.-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466788888888888765 3333 67788888999999999999999999998875 332 24677788888999999
Q ss_pred hHHHHHHHHHHhCCC
Q 007998 430 DDVGRVRKAMKNRDV 444 (582)
Q Consensus 430 ~~a~~~~~~m~~~~~ 444 (582)
+.|+.-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999988877664
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.44 E-value=0.12 Score=47.91 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=49.1
Q ss_pred hcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CchhHHHHHHHHHhcCC
Q 007998 359 RAGRLQEACDIVKSV-------SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN---NCGDFVLLSNLYAAYER 428 (582)
Q Consensus 359 ~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 428 (582)
+.|++.+|...|... ...||...| |..++...|+++.|..+|..+.+..|+ -|..+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 344455555555443 122344444 556666667777777777766665543 34566666666777777
Q ss_pred chHHHHHHHHHHhCC
Q 007998 429 WDDVGRVRKAMKNRD 443 (582)
Q Consensus 429 ~~~a~~~~~~m~~~~ 443 (582)
.++|..+++...++-
T Consensus 231 ~d~A~atl~qv~k~Y 245 (262)
T COG1729 231 TDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHHHHC
Confidence 777777776666543
No 231
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.44 E-value=0.17 Score=42.15 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=39.9
Q ss_pred HhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998 357 LGRAGRLQEACDIVKSV----SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413 (582)
Q Consensus 357 ~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 413 (582)
..+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.++++|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 44667777777777766 3333 344555677788888888888888888888887654
No 232
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.22 E-value=0.14 Score=47.18 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=78.6
Q ss_pred HHHHHHhccc-CCCCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC----------
Q 007998 263 KAFEVFDNIK-CRKSLVTWNTMVMAFAVH-----GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG---------- 326 (582)
Q Consensus 263 ~A~~~~~~~~-~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 326 (582)
..++.|.... .++|-.+|-+++..+..+ +..+=....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455566554 456778888888877654 455666667788899999999999999998875532
Q ss_pred ------CHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHH
Q 007998 327 ------LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364 (582)
Q Consensus 327 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 364 (582)
+-+-+.+++++|..+|+.||.++-..|+.++++.+..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 23457899999999999999999999999999988643
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.13 E-value=0.13 Score=43.85 Aligned_cols=70 Identities=19% Similarity=0.116 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHH-----HcCCCCchhH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR-----EERLDMNVVV 247 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 247 (582)
+...++..+...|++++|+.+...+.... |.|...|..+|.++...|+...|.++|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555666777777777777766665 5566667777777777777777776666553 2466665444
No 234
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.09 E-value=5.3 Score=42.02 Aligned_cols=151 Identities=12% Similarity=0.112 Sum_probs=93.3
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCChHHHHHHH
Q 007998 56 NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSD----ALTCSFALKACARVLALFETLQIH 131 (582)
Q Consensus 56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~ 131 (582)
|.+++|.+++-.+..+|. .|..+.+.|+|-...++++.= |-..| ...|+.+...++....+++|.+.+
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999988887775 355666677776666665431 11111 245677777777777777777776
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH
Q 007998 132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211 (582)
Q Consensus 132 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~ 211 (582)
..-- +. ...+.+|.+..++++-+.+-..+++. ....-.|...+.+.|.-++|.+.|-+- + .|-
T Consensus 820 ~~~~------~~---e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s--~pk-- 882 (1189)
T KOG2041|consen 820 SYCG------DT---ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S--LPK-- 882 (1189)
T ss_pred Hhcc------ch---HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c--CcH--
Confidence 5431 11 13566666667777766666666543 334556677777777777777766433 2 222
Q ss_pred HHHHHHHHHhccCCcHHHHHHHH
Q 007998 212 TVLGALAACGHLGAWKEGDKIHE 234 (582)
Q Consensus 212 t~~~ll~a~~~~~~~~~a~~~~~ 234 (582)
..+..|..++++.+|.++-+
T Consensus 883 ---aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 883 ---AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH
Confidence 23455666666666655543
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.09 E-value=2.2 Score=42.23 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---Ch----hHHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 007998 148 TLLDVYAKVGEIVSAKKVFDEMGVR---DI----ASWNALIAGLAQ---GNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217 (582)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll 217 (582)
.|+-.|....+++...++++.++.. ++ ..-.-..-++.+ .|+.++|++++..+..... .+++.||..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~-~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE-NPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC-CCChHHHHHHH
Confidence 3444588888889999988888654 11 111123334455 7888999999888655555 78888888777
Q ss_pred HHH
Q 007998 218 AAC 220 (582)
Q Consensus 218 ~a~ 220 (582)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 665
No 236
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.95 E-value=4.4 Score=40.37 Aligned_cols=129 Identities=14% Similarity=0.092 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhHcC-CccChhhHHhhhhHHhhcCCHHHHHHHHHh-CCCCCCHHHH-HHHHHHH
Q 007998 313 VSYLAALCACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVVDLLGRAGRLQEACDIVKS-VSMGTDMVLW-QTLLGAC 389 (582)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~-~~ll~~~ 389 (582)
..|...+++-.+..-++.|+.+|-++.+.+ +.+++..+++++.-++ .|+..-|.++|+- |..-||...| +-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345666777777888999999999999977 6688899999988765 5677889999874 3334554444 4566667
Q ss_pred HhcCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 390 QLYGDVEMAEIASRKLVEMGS--NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
...++-+.|..+|+...+.-. .-...|..++.--..-|+...+..+-++|.+.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 778888999999996554322 22457888888778888888888877777654
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.46 Score=46.50 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=74.3
Q ss_pred hHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 007998 349 HYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426 (582)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 426 (582)
.+..|.-.|.+.+++.+|++.-... ... +|+...--=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4556777888999999998887765 333 46766666778899999999999999999999999988888888777776
Q ss_pred CCchHH-HHHHHHHHhC
Q 007998 427 ERWDDV-GRVRKAMKNR 442 (582)
Q Consensus 427 g~~~~a-~~~~~~m~~~ 442 (582)
.+..+. .++|..|-.+
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 665554 7788888643
No 238
>PRK15331 chaperone protein SicA; Provisional
Probab=94.83 E-value=0.66 Score=39.73 Aligned_cols=86 Identities=12% Similarity=-0.005 Sum_probs=39.3
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007998 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263 (582)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 263 (582)
+-+.|++++|..+|+-+...+ +-|..-+..+..+|...+++++|...|......+. -|+...-.....|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 334555555555555544433 23333334444444444555555555554443322 122223334455555555555
Q ss_pred HHHHHhccc
Q 007998 264 AFEVFDNIK 272 (582)
Q Consensus 264 A~~~~~~~~ 272 (582)
|+..|+...
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 555555443
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=94.73 E-value=0.58 Score=47.00 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=52.6
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 364 QEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 364 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
.+|.++-++. ...| |+.....+..+....++++.|...|+++..++|+.+.++...+....-.|+.++|.+.+++..+
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3444444433 3333 5566555656566666677788888888888887777777777777777888777777776544
Q ss_pred C
Q 007998 442 R 442 (582)
Q Consensus 442 ~ 442 (582)
.
T Consensus 401 L 401 (458)
T PRK11906 401 L 401 (458)
T ss_pred c
Confidence 3
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.63 E-value=1.7 Score=35.45 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD 242 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 242 (582)
.....+......|+-+.-.+++..+.+.+ .+++.....+.+||.+.|+..++.+++.++-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44556777888888888888888887654 788888889999999999999999998888888754
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=94.59 E-value=2.4 Score=42.70 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=103.7
Q ss_pred HHH--HHHHHHHHhC-----CChhHHHHHHHHHHh-cCCCCCHH-HHHHHHHHHHc---------CCCHHHHHHHHHHHh
Q 007998 278 VTW--NTMVMAFAVH-----GDGPRALELFEQMGR-AGVKPDDV-SYLAALCACNH---------AGLVDDGVRLFNSMA 339 (582)
Q Consensus 278 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 339 (582)
..| ..++.+.... ...+.|+.+|.+... +...|+.. .|..+..++.. .....+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 6666665542 234678889999883 33567653 44333322221 234556777777777
Q ss_pred HcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417 (582)
Q Consensus 340 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 417 (582)
+.+ +-|......+..++.-.++++.|...|++. ...|| ..+|......+.-.|+.++|.+.+++.++++|.....-+
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 743 345666666777778888899999999987 55674 556666666777889999999999999999997544333
Q ss_pred --HHHHHHHhcCCchHHHHHH
Q 007998 418 --LLSNLYAAYERWDDVGRVR 436 (582)
Q Consensus 418 --~l~~~~~~~g~~~~a~~~~ 436 (582)
..+++|...+ .++|.+++
T Consensus 411 ~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 411 IKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHcCCc-hhhhHHHH
Confidence 3344565554 55666655
No 242
>PRK09687 putative lyase; Provisional
Probab=94.55 E-value=4.6 Score=38.71 Aligned_cols=179 Identities=15% Similarity=0.075 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCh----hHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 007998 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA----SEAVDLFKRMKMEGVFKPNEVTVLGAL 217 (582)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~pd~~t~~~ll 217 (582)
|..+.-..+..+...|..+....+..-+..+|...-...+.++.+.|+. .++...+..+... .||...-...+
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~A~ 112 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRASAI 112 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHHHH
Confidence 4444444444454444433222222222334444444445555555542 3455555555333 45555555555
Q ss_pred HHHhccCCcHH--HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCC-Chh
Q 007998 218 AACGHLGAWKE--GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG-DGP 294 (582)
Q Consensus 218 ~a~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 294 (582)
.++...+.... .......+...-..++..+-...+.++++.|+.+....+...+. .+|...-..-+.++.+.+ +..
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~-d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLK-DPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhc-CCCHHHHHHHHHHHhcCCCCCH
Confidence 55544432110 11122222222223355555556666666665433333333333 444444444444444432 133
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 007998 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327 (582)
Q Consensus 295 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 327 (582)
++...+..+.. .+|...-...+.++.+.++
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 44444444442 3344444445555555555
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.49 E-value=0.47 Score=47.53 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 007998 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSL----VTWNTMVMAFAVHGDGPRALELFEQMGRA 306 (582)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 306 (582)
+...++.+..+|.+.|++++|...|++.. ..|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35566666666667777777777766532 33442 24666666677777777777766666653
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.46 E-value=3.7 Score=37.21 Aligned_cols=199 Identities=18% Similarity=0.115 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC-HHHHHHHHH-H
Q 007998 211 VTVLGALAACGHLGAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS-LVTWNTMVM-A 286 (582)
Q Consensus 211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~-~~~~~~li~-~ 286 (582)
..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.... ..++ ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444444455555555555555444431 122334444455555555555666666665544 0111 122222222 5
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCC
Q 007998 287 FAVHGDGPRALELFEQMGRAGVKP----DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362 (582)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 362 (582)
+...|+++.|...|.+... ..| ....+......+...++.+.+...+..............+..+...+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 6677777777777777644 233 2233333444456677888888888777763211135566667777777778
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998 363 LQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411 (582)
Q Consensus 363 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 411 (582)
+++|...+... ...|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888887765 33443 445555555555667789999999998888875
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.44 E-value=7.2 Score=40.53 Aligned_cols=156 Identities=16% Similarity=0.083 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhCC-CCCCh------hHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchHH
Q 007998 77 NAVLRGLAHSSKPTNAVLWYRQMLRGS-HRSDA------LTCSFALKACAR----VLALFETLQIHSHVLRHGFLADALL 145 (582)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 145 (582)
..++....-.|+-+.+++++.+..+.+ +. .+ -+|..++..+.. ..+.+.+.++++.+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 345555556677777777777765532 22 11 123333333322 34566777777777766 344444
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 007998 146 GT-TLLDVYAKVGEIVSAKKVFDEMGVR-------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217 (582)
Q Consensus 146 ~~-~li~~y~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll 217 (582)
|. .-...+...|++++|.+.|++.... ....+--+.-.+.-.++|++|.+.|..+.+.. ..+..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHH
Confidence 33 2345666778888888888764321 22334445555677778888888888887765 45555665555
Q ss_pred HHH-hccCCc-------HHHHHHHHHHH
Q 007998 218 AAC-GHLGAW-------KEGDKIHEYIR 237 (582)
Q Consensus 218 ~a~-~~~~~~-------~~a~~~~~~~~ 237 (582)
.+| ...++. ++|.+++.++.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 544 345555 66666666654
No 246
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.37 E-value=9.2 Score=41.44 Aligned_cols=114 Identities=13% Similarity=0.061 Sum_probs=51.6
Q ss_pred CCChhHHHHHHHHHHhc-CCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHH
Q 007998 290 HGDGPRALELFEQMGRA-GVKPDDV--SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA 366 (582)
Q Consensus 290 ~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 366 (582)
..+.+.|..++.+.... ++.+... ....+.......+...++...+....... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 34456677777665432 2322222 22222222222221344444444433211 1223333334444466677777
Q ss_pred HHHHHhCCCC-CCHHHHHH-HHHHHHhcCChHHHHHHHHHH
Q 007998 367 CDIVKSVSMG-TDMVLWQT-LLGACQLYGDVEMAEIASRKL 405 (582)
Q Consensus 367 ~~~~~~~~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~ 405 (582)
...+..|+.. .+..-|.- +..+....|+.++|...|+++
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777666321 11112222 334445567777777777766
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.37 E-value=1.3 Score=45.32 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=90.5
Q ss_pred HHhCCChhHHHHHHH-HHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007998 184 LAQGNLASEAVDLFK-RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD 262 (582)
Q Consensus 184 ~~~~g~~~~A~~~~~-~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 262 (582)
..-.++++++.++.. .-.-..+ +..-...++.-+.+.|-.+.|.++-. |. ..-.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i---~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI---PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccC---ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 445667777666554 1111111 24446666666677777777766542 22 12345566788888
Q ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcC
Q 007998 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342 (582)
Q Consensus 263 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 342 (582)
.|.++-++.. +...|..|.......|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++-+.....|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8888776665 666888888888888888888888877532 3445555666777777666666665544
Q ss_pred CccChhhHHhhhhHHhhcCCHHHHHHHHHhCC
Q 007998 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374 (582)
Q Consensus 343 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 374 (582)
-++....++.-.|+.++..+++.+.+
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 13333444555677777777777664
No 248
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.31 E-value=0.096 Score=31.58 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411 (582)
Q Consensus 380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 411 (582)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888889999999999999888885
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.30 E-value=0.13 Score=30.82 Aligned_cols=33 Identities=30% Similarity=0.251 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456777788888888888888888888888864
No 250
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.29 E-value=6.4 Score=39.30 Aligned_cols=133 Identities=12% Similarity=0.110 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhH-Hhhh
Q 007998 277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY-GSVV 354 (582)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li 354 (582)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|.++|+.=..+ -||...| ...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3467778888888888999999999999988 6788888888887665 68888999999876652 2443333 3456
Q ss_pred hHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 355 DLLGRAGRLQEACDIVKSV--SMGTD--MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
..+.+.++-+.|..+|+.. .+..+ ...|..++.--...|+...+..+-+++.++-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6778899999999999854 22223 5689999999999999999999999999988864
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.29 E-value=1.9 Score=43.65 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=89.4
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHH
Q 007998 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368 (582)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 368 (582)
+..+...-++.-++..+ +.||-.+.-.++ +-.....+.+++++|++..+.|- ..+..- ......|. ..+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccc---hhh
Confidence 34445555555555554 456654332222 33345668888888888877320 000000 00001111 111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007998 369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN--NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK 446 (582)
Q Consensus 369 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 446 (582)
.+..-..+|-..+-..|...+.+.|+.++|.+.++++++..|. +......|++++...+.+.++..++.+-.+..+.+
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 1111112223344456777888999999999999999887764 45577889999999999999999988876555555
Q ss_pred CCcccE
Q 007998 447 VPGFSY 452 (582)
Q Consensus 447 ~~~~s~ 452 (582)
....+|
T Consensus 329 SAti~Y 334 (539)
T PF04184_consen 329 SATICY 334 (539)
T ss_pred hHHHHH
Confidence 444444
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=5.1 Score=37.80 Aligned_cols=142 Identities=17% Similarity=0.114 Sum_probs=71.5
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHH
Q 007998 286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365 (582)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 365 (582)
.....|++.+|..+|+...... .-+...-..+..++...|+.+.|..++..+-..--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455666666666666665532 112233445556666666666666666655431111111111122334444444443
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHhcCC
Q 007998 366 ACDIVKSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG--SNNCGDFVLLSNLYAAYER 428 (582)
Q Consensus 366 A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 428 (582)
...+-.+..-.| |...--.+...+...|+.+.|.+.+-.+++.+ -.+...-..|+..+..-|.
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 334444332334 45555556666666677776666666666543 2344555556666655554
No 253
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.15 E-value=3.2 Score=37.19 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=107.0
Q ss_pred hcCCHHHHHHHHhccc-CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007998 257 KCGLLDKAFEVFDNIK-CRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334 (582)
Q Consensus 257 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 334 (582)
..|-..-|+--|.+.. ..| -+..||-+.--+...|+++.|.+.|+...+....-+ .+...-.-++--.|++..|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHH
Confidence 3444444554454322 234 456788888888899999999999998887432222 2322222244457888888877
Q ss_pred HHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-
Q 007998 335 FNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN- 412 (582)
Q Consensus 335 ~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~- 412 (582)
+...-+ ..-.|-...|--++. +.-++.+|..-+.+--...|..-|...|-.+.- |++. .+.+++++.+-..++
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNT 230 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchH
Confidence 666655 222333333433322 344566776554332113456667665554432 2211 223444444433332
Q ss_pred ------chhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 413 ------CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 413 ------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
..+|.-|+.-|...|..++|..+|+.....++
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35888899999999999999999998776544
No 254
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.10 E-value=8.5 Score=39.97 Aligned_cols=378 Identities=10% Similarity=0.026 Sum_probs=220.5
Q ss_pred HHHHHhcCCC-CCHHHHHHHHhcCC--CCChh-HHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHH-h
Q 007998 46 IIEFYALSPL-NELAYAHALFRQIN--APSTN-DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA-R 120 (582)
Q Consensus 46 ~~~li~~y~~-g~~~~A~~~f~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~ 120 (582)
|+.||.--.+ .+++.++.+.+.+- -|... -|-.....=.+.|..+.+.++|++-+.. ++-+...|...+.-+. .
T Consensus 48 wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~ 126 (577)
T KOG1258|consen 48 WTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNN 126 (577)
T ss_pred hHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcc
Confidence 5666665555 66677777777764 35554 3555555556778888899999888764 4555556665554443 5
Q ss_pred cCChHHHHHHHHHHHHc-CCC-CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHH---hC------CC
Q 007998 121 VLALFETLQIHSHVLRH-GFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA---QG------NL 189 (582)
Q Consensus 121 ~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~---~~------g~ 189 (582)
.|+.+..+..|+.++.. |.. .....|...|.--..++++.....+++++.+-....++..-.-|. +. -.
T Consensus 127 ~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~ 206 (577)
T KOG1258|consen 127 NGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLS 206 (577)
T ss_pred CCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcC
Confidence 67778888888887763 321 234467777777777888888888888886654444444443333 22 22
Q ss_pred hhHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHhc-cCCcHHHHHH------------------------HHHHHHc--
Q 007998 190 ASEAVDLFKRMKME---GVFKPNEVTVLGALAACGH-LGAWKEGDKI------------------------HEYIREE-- 239 (582)
Q Consensus 190 ~~~A~~~~~~m~~~---g~~~pd~~t~~~ll~a~~~-~~~~~~a~~~------------------------~~~~~~~-- 239 (582)
.+++.++-...... +...+.......-+.-... .+..+++..+ ++.-++.
T Consensus 207 ~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpY 286 (577)
T KOG1258|consen 207 IDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPY 286 (577)
T ss_pred HHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccc
Confidence 34444443332210 0001112222222221111 1112222211 1111111
Q ss_pred ----C-CCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC--CC
Q 007998 240 ----R-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV--KP 310 (582)
Q Consensus 240 ----~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p 310 (582)
+ ..++..+|...++.-.+.|+.+.+.-+|++.. +..=...|-..+.-....|+.+-|-.++....+--+ .|
T Consensus 287 fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~ 366 (577)
T KOG1258|consen 287 FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP 366 (577)
T ss_pred cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc
Confidence 0 11245677777777888888888888888765 122233455555555555777777777666554322 22
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh-hhHHhhhhHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHH
Q 007998 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM-KHYGSVVDLLGRAGRLQEAC---DIVKSV-SMGTDMVLWQTL 385 (582)
Q Consensus 311 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l 385 (582)
....+.+. -+-..|+...|..+++.....- |+. ..-..-+....+.|..+.+. +++... +.+-+......+
T Consensus 367 ~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 367 IIHLLEAR--FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred HHHHHHHH--HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence 22222222 3456789999999999998832 442 33333455667888888887 555443 222233333333
Q ss_pred HH-----HHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998 386 LG-----ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428 (582)
Q Consensus 386 l~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (582)
.- -+...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 22 23456789999999999999999999999999888877664
No 255
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=9.9 Score=40.72 Aligned_cols=89 Identities=20% Similarity=0.354 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHH
Q 007998 294 PRALELFEQMGRAGVKP-----DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368 (582)
Q Consensus 294 ~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 368 (582)
+..+++|.+.....+-| ........+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.+++++|.+
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn--------~k~AL~lII~el~die~AIe 682 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGN--------AKEALKLIINELRDIEKAIE 682 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcc--------hHHHHHHHHHHhhCHHHHHH
Confidence 45556665554433222 112233444555555555555544444421 22222222334455555665
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC
Q 007998 369 IVKSVSMGTDMVLWQTLLGACQLYG 393 (582)
Q Consensus 369 ~~~~~~~~p~~~~~~~ll~~~~~~g 393 (582)
+.++- .|...|..||..+...-
T Consensus 683 fvKeq---~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 683 FVKEQ---DDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHhc---CCHHHHHHHHHHhhcCc
Confidence 55543 37778888887766543
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.05 E-value=1.2 Score=42.81 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=21.2
Q ss_pred HhCCChhHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHhccCCcHHHHH
Q 007998 185 AQGNLASEAVDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEGDK 231 (582)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~-~~pd~~t~~~ll~a~~~~~~~~~a~~ 231 (582)
.+..+.++|+..+.+-+..-- ...-..+|..+..+.+..|.++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 345556666666655543210 01112244444555555555554443
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.92 E-value=0.25 Score=41.24 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC--------ccc
Q 007998 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP--------GFS 451 (582)
Q Consensus 383 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--------~~s 451 (582)
-.-.....+.|+++.|.+.|+.+...-|.. ..+...|+.+|.+.|++++|...+++..+.....+. |.+
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 333445567899999999999999987754 457788999999999999999999999987665332 111
Q ss_pred EE-EECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccC
Q 007998 452 YI-EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG 494 (582)
Q Consensus 452 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd 494 (582)
.. ...+.++.|...++.......++..++++...-....|.+|
T Consensus 94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 11 22344445553344444566677767666665555555444
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.83 E-value=3.5 Score=34.66 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhC
Q 007998 250 AVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVH 290 (582)
Q Consensus 250 ~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~ 290 (582)
.++..+.+.+.......+++.+. ...+....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 34444444455555555554432 012333445555555443
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.81 E-value=1.6 Score=41.60 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=97.1
Q ss_pred hcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH--HHHHH--HHHHHcCCCHHH
Q 007998 257 KCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV--SYLAA--LCACNHAGLVDD 330 (582)
Q Consensus 257 ~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~l--l~a~~~~g~~~~ 330 (582)
..|+.-+|-..++++. .+.|..+|+.-=.+|..+|+.+.-...+++..-. ..||.. +|..= .-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4566666666666654 3568888888888888888888888888887653 344543 23222 224457788888
Q ss_pred HHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHH
Q 007998 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD-------MVLWQTLLGACQLYGDVEMAEIASR 403 (582)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~ 403 (582)
|++.-++..+-+ +.|.-.-.++...+--.|++.++.+++.+-...-+ ..-|.. .-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHHHH
Confidence 888877777622 23445555677777788888888888876632111 112222 223344578888888887
Q ss_pred HHH--HcCCCCc
Q 007998 404 KLV--EMGSNNC 413 (582)
Q Consensus 404 ~~~--~~~p~~~ 413 (582)
+-+ ++..+|.
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 632 3444454
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.64 E-value=1.6 Score=44.74 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 007998 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG 204 (582)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 204 (582)
+...|..|.+...++|+++-|++.|.+.. -|..|+-.|.-.|+.+.-.++.+.....|
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 44455555555555555555555555543 23444444445555544444444444433
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.55 E-value=4 Score=34.34 Aligned_cols=84 Identities=19% Similarity=0.191 Sum_probs=40.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhH
Q 007998 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE 192 (582)
Q Consensus 113 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 192 (582)
.++..+...+........++.+.+.+ ..+....+.++..|++..+ ++....++. ..+.......++.|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 44444544555555666666655554 2455566666666665432 233333331 1122222334455555555555
Q ss_pred HHHHHHHH
Q 007998 193 AVDLFKRM 200 (582)
Q Consensus 193 A~~~~~~m 200 (582)
+.-++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 55555444
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.48 E-value=5.6 Score=36.37 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC--CCCH---HHHHHHHH
Q 007998 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV--KPDD---VSYLAALC 320 (582)
Q Consensus 246 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~t~~~ll~ 320 (582)
..++--..+|..+|.++.|-..+++.. -...+-++++|+++|++...-=. ..+. ..+..+-.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 345555667777777776666555432 01234456666666666543100 0111 12333444
Q ss_pred HHHcCCCHHHHHHHHHHHhHc----CCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhC---C-C-CC-CHHHHHHHHHHH
Q 007998 321 ACNHAGLVDDGVRLFNSMANC----GVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSV---S-M-GT-DMVLWQTLLGAC 389 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~---~-~-~p-~~~~~~~ll~~~ 389 (582)
.+.+...+++|-..+.+-... .--++ -..|-..|-.|.-..++..|.+.++.- | + .| |..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 555666666665555433220 00122 133455566677778899999999873 2 1 22 677888888887
Q ss_pred HhcCChHHHHHHHH
Q 007998 390 QLYGDVEMAEIASR 403 (582)
Q Consensus 390 ~~~g~~~~a~~~~~ 403 (582)
- .|+.+++..++.
T Consensus 239 d-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 D-EGDIEEIKKVLS 251 (308)
T ss_pred c-cCCHHHHHHHHc
Confidence 5 567777666553
No 263
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.23 E-value=1.9 Score=40.08 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhHcC--CccChhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 007998 314 SYLAALCACNHAGLVDDGVRLFNSMANCG--VKPNMKHYGSVVDLLGRAGRLQEACDIVKSV----SMGT-DMVLWQTLL 386 (582)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll 386 (582)
.|+..+..+ ..|++..|...|...++.. -......+--|...+...|++++|..+|..+ |..| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555443 3455777777777766611 0111223334677777777777777776655 3333 235556666
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 387 GACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
......|+.++|...++++.+.-|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 67778888888888888888888866543
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.92 E-value=7.7 Score=35.90 Aligned_cols=174 Identities=15% Similarity=0.122 Sum_probs=97.5
Q ss_pred HHhcCCHHHHHHHHhccc-C----CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc-CCCCCH--HHHHHHHHHHHc--
Q 007998 255 YAKCGLLDKAFEVFDNIK-C----RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDD--VSYLAALCACNH-- 324 (582)
Q Consensus 255 y~~~g~~~~A~~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~~ll~a~~~-- 324 (582)
-.+.|++++|.+.|+.+. . +-...+--.++-++.+.+++++|+..+++.... +-.||. ..|...+.-+..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 346788888888888775 1 112334445566777788888888888877663 223332 233333332221
Q ss_pred --CCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHH
Q 007998 325 --AGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW--QTLLGACQLYGDVEMAE 399 (582)
Q Consensus 325 --~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~ 399 (582)
..+...+...+..+.+ -.--||.. -...|..-+..+. |.... ..+..-|.+.|.+..|.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHHHH
Confidence 1222233333333322 00012211 1111111111110 11111 23456788999999999
Q ss_pred HHHHHHHHcCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 400 IASRKLVEMGSNNC---GDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 400 ~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
.-++++++.-|+.+ ..+..+.++|...|..++|.+.-+-+...-.
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 99999999866543 4666788899999999999998877765443
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.89 E-value=3.3 Score=39.98 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=25.0
Q ss_pred hcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCChhHHHHH
Q 007998 155 KVGEIVSAKKVFDEMGVR------DIASWNALIAGLAQGNLASEAVDL 196 (582)
Q Consensus 155 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~ 196 (582)
...+.++|+..+.+..++ -..++..+..+..+.|.+++++..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 456667777666554432 123555666677777777766554
No 266
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.85 E-value=6.1 Score=41.06 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=103.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcC-CCCCH-----HHHHHHHHHHHc----CCCHHHHHHHHHHHhHcCCccChhhHH
Q 007998 282 TMVMAFAVHGDGPRALELFEQMGRAG-VKPDD-----VSYLAALCACNH----AGLVDDGVRLFNSMANCGVKPNMKHYG 351 (582)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 351 (582)
.++....-.|+-+.+++.+.+..+.+ +.-.. .+|..++..+.. ....+.+.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 44555555677777777777765422 22111 123334433332 45678899999988872 36655554
Q ss_pred hh-hhHHhhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH-HHHHHH
Q 007998 352 SV-VDLLGRAGRLQEACDIVKSVSM-G-----TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV-LLSNLY 423 (582)
Q Consensus 352 ~l-i~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~ 423 (582)
.. ...+...|++++|.+.|++.-. + -....+--+...+....++++|...|.++.+.+.-....|. ..+.++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 32 3556778999999999986521 1 12334445566677889999999999999998765555665 445556
Q ss_pred HhcCCc-------hHHHHHHHHHHh
Q 007998 424 AAYERW-------DDVGRVRKAMKN 441 (582)
Q Consensus 424 ~~~g~~-------~~a~~~~~~m~~ 441 (582)
...|+. ++|..++++...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 788888 888888887654
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.17 E-value=1.4 Score=42.03 Aligned_cols=159 Identities=9% Similarity=-0.025 Sum_probs=116.0
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhh----hhHHhhcCCHH
Q 007998 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV----VDLLGRAGRLQ 364 (582)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~ 364 (582)
-+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++... ..|+...|..+ .-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 478888999999998875 4556677777788999999999999999988862 24555444433 33455799999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998 365 EACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN----NCGDFVLLSNLYAAYERWDDVGRVRKA 438 (582)
Q Consensus 365 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 438 (582)
+|++.-++. .++| |.-.-.++....-..|+..++.++..+-...=.. -...|-..+-.|...+.++.|+.+|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999998876 5555 6666677778888899999998887765332111 123455666677788999999999997
Q ss_pred HHhCCCccCCc
Q 007998 439 MKNRDVKKVPG 449 (582)
Q Consensus 439 m~~~~~~~~~~ 449 (582)
=.-+.+.+..+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 66555555544
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=5.5 Score=42.89 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=92.5
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHH
Q 007998 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMN--VVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFA 288 (582)
Q Consensus 213 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~ 288 (582)
...-+....+...++.|..+- ...+.+++ ..+.....+-+.+.|++++|...|-+-. .+|.. +|.-|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-----Vi~kfL 408 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-----VIKKFL 408 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-----HHHHhc
Confidence 444455555555555555443 22333322 2233334445556777777776665432 12222 344445
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCc-cChhhHHhhhhHHhhcCCHHHHH
Q 007998 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK-PNMKHYGSVVDLLGRAGRLQEAC 367 (582)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 367 (582)
......+-..+++.+.+.|+.-...| ..|+.+|.+.++.+.-.++.+.-.+ |.. .|. ...+..+.+.+-+++|.
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dht-tlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~---e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDHT-TLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDV---ETALEILRKSNYLDEAE 483 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchhH-HHHHHHHHHhcchHHHHHHHhcCCC-cceeeeH---HHHHHHHHHhChHHHHH
Confidence 55556666667777777775433322 3577777777777776665544331 211 122 23455666667777776
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405 (582)
Q Consensus 368 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 405 (582)
-+-.+... +......++ -..+++++|.+.++.+
T Consensus 484 ~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 66665543 233333333 3456777777776643
No 269
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.97 E-value=5.2 Score=38.57 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHcCCC--HHHHHHHHHHHhHcCCccChhhHHhhh
Q 007998 294 PRALELFEQMGRAGVKPDD--VSYLAALCACNHAGL--VDDGVRLFNSMANCGVKPNMKHYGSVV 354 (582)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li 354 (582)
+.+..+|+.+.+.|+..+. ...+.+|..+..... ...+..+++.+.+.|+++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 4566777777777766554 344444444333222 347778888888888888877776543
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.93 E-value=2.4 Score=34.56 Aligned_cols=85 Identities=18% Similarity=-0.003 Sum_probs=37.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchh---HHHHHHHHHHhcCC
Q 007998 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV---VCNAVIDMYAKCGL 260 (582)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~y~~~g~ 260 (582)
.+..|+.++|++.|.+.+..- +.....|+.-..++.-.|+.++|..-+++.++..-.-+.. .|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344455555555555544332 3344455555555555555555555444444422111111 11122233455555
Q ss_pred HHHHHHHHhc
Q 007998 261 LDKAFEVFDN 270 (582)
Q Consensus 261 ~~~A~~~~~~ 270 (582)
.+.|+.-|+.
T Consensus 131 dd~AR~DFe~ 140 (175)
T KOG4555|consen 131 DDAARADFEA 140 (175)
T ss_pred hHHHHHhHHH
Confidence 5555555543
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.85 E-value=0.55 Score=30.33 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~ 214 (582)
+|..+...|.+.|++++|.++|++.++.. +-|...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHH
Confidence 46666777777777777777777777663 33444433
No 272
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.76 E-value=0.68 Score=40.68 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=67.2
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCc
Q 007998 357 LGRAGRLQEACDIVKSV-SMGT------DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW 429 (582)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 429 (582)
+...|++++|..-|... ..-| -...|..-..+..+.+.++.|+.-..+.++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45677777777766654 1112 2334555556778889999999999999999998888888888999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 007998 430 DDVGRVRKAMKNRDV 444 (582)
Q Consensus 430 ~~a~~~~~~m~~~~~ 444 (582)
++|+.-++.+.+...
T Consensus 185 eealeDyKki~E~dP 199 (271)
T KOG4234|consen 185 EEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999998887654
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.58 E-value=13 Score=35.58 Aligned_cols=18 Identities=6% Similarity=-0.337 Sum_probs=10.8
Q ss_pred HHHhcCChHHHHHHHHHH
Q 007998 388 ACQLYGDVEMAEIASRKL 405 (582)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~ 405 (582)
.+.+.++++.|.+.|+-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 345566677776666643
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.54 E-value=7.6 Score=33.23 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=51.0
Q ss_pred HHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHH
Q 007998 321 ACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS-MGTDMVLWQTLLGACQLYGDVEMA 398 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a 398 (582)
.-...++.+++..++..+.- +.-.|...++. ...+.+.|++.+|..+|+++. ..|....-.+|+..|....+-..=
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 33456677777777777765 22122233333 334567788888888888772 234444445666666555554555
Q ss_pred HHHHHHHHHcCC
Q 007998 399 EIASRKLVEMGS 410 (582)
Q Consensus 399 ~~~~~~~~~~~p 410 (582)
....+++++.++
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 555666666665
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.23 E-value=17 Score=37.15 Aligned_cols=17 Identities=24% Similarity=0.073 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCCCc
Q 007998 397 MAEIASRKLVEMGSNNC 413 (582)
Q Consensus 397 ~a~~~~~~~~~~~p~~~ 413 (582)
.|.+++.++.+.+|..+
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 46678888888888654
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.16 E-value=1.2 Score=41.97 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 381 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
++..++..+...|+.+.+...++++.+.+|-+...|..+..+|.+.|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556667777778888888888888888888888888888888888888888888877754
No 277
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=15 Score=34.79 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=41.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 007998 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR 172 (582)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 172 (582)
......|++.++..++..+...... +....-.++.+|...|+.+.|..+++.++..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 3455778888888888888776533 4556667888888888888888888888754
No 278
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.74 E-value=10 Score=32.84 Aligned_cols=133 Identities=13% Similarity=0.121 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhc-CCHHHHHHHHhhcC
Q 007998 93 VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADAL-LGTTLLDVYAKV-GEIVSAKKVFDEMG 170 (582)
Q Consensus 93 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~-g~~~~A~~~f~~m~ 170 (582)
++.++.+.+.+++|+...+..+++.+.+.|.+..-.+ ++..++-+|.. +-..|++.-.+. .-..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455555666777777777777777777777654443 33444333332 333332221111 01233444444443
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 007998 171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238 (582)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 238 (582)
..+..++..+...|++-+|+.+.+..... +......++.+..+.++...-..++....+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24555667777888888888877664322 112224455555555555555555554443
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.72 E-value=2.3 Score=40.24 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----cCCCCCHHHHHH
Q 007998 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR-----AGVKPDDVSYLA 317 (582)
Q Consensus 245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 317 (582)
..++..++..+..+|+.+.+...++++. .+-|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4467788999999999999999998875 355788999999999999999999999998865 477787766555
Q ss_pred HHHH
Q 007998 318 ALCA 321 (582)
Q Consensus 318 ll~a 321 (582)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.57 E-value=0.5 Score=28.96 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998 382 WQTLLGACQLYGDVEMAEIASRKLVE 407 (582)
Q Consensus 382 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 407 (582)
|..|...|.+.|++++|++++++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 281
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.56 E-value=0.56 Score=28.06 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411 (582)
Q Consensus 381 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 411 (582)
+|..+...+...|++++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666677777788888888888888777763
No 282
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.56 E-value=29 Score=37.73 Aligned_cols=170 Identities=14% Similarity=0.063 Sum_probs=94.1
Q ss_pred HHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHH----HHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 007998 49 FYALSPL-NELAYAHALFRQINAPSTNDFNAVL----RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123 (582)
Q Consensus 49 li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 123 (582)
-+++..+ .-++.|..+-..-.- |...-..+. +-+-+.|++++|...|-+-... +.|. .+++-+.....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHH
Confidence 3444444 666666666654432 222222333 3445678999998888776543 3332 34555555555
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007998 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA-SWNALIAGLAQGNLASEAVDLFKRMKM 202 (582)
Q Consensus 124 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 202 (582)
+..-..+++.+.+.|+. +..--+.|+++|.+.++.++-.+..+........ -....+..+.+.+-.++|.-+-.+...
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 55566677777788865 3444567889999999988888877766521110 123344555555555555544333321
Q ss_pred cCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHH
Q 007998 203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235 (582)
Q Consensus 203 ~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 235 (582)
.......++ -..+++++|.++++.
T Consensus 492 ------he~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 492 ------HEWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred ------CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence 222222222 244566666666554
No 283
>PRK09687 putative lyase; Provisional
Probab=90.51 E-value=17 Score=34.87 Aligned_cols=240 Identities=11% Similarity=-0.001 Sum_probs=133.0
Q ss_pred HHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCC
Q 007998 64 LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL----FETLQIHSHVLRHGF 139 (582)
Q Consensus 64 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~ 139 (582)
+++.+..+|.......+.++...|. .++...+..+.. .+|...=...+.+++..|+. .++...+..+...
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-- 101 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-- 101 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--
Confidence 3334456777777777777777764 445555555543 23555555666777777763 3455555554333
Q ss_pred CCchHHHHHHHHHHHhcCCH-----HHHHHHHhh-cCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHH
Q 007998 140 LADALLGTTLLDVYAKVGEI-----VSAKKVFDE-MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213 (582)
Q Consensus 140 ~~~~~~~~~li~~y~~~g~~-----~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~ 213 (582)
+++..+....+.+++..+.- ..+...+.. +..++...-...+.++.+.++ ++|+..+-.+.+. +|...-
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR 176 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVR 176 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHH
Confidence 55667776677777665431 223333322 233455555556666666665 4566666666643 333444
Q ss_pred HHHHHHHhccC-CcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCC
Q 007998 214 LGALAACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD 292 (582)
Q Consensus 214 ~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~ 292 (582)
...+.++.+.+ ....+...+..++. +++..+...-+.++.+.|+.+-.-.+.+.+. .+++ .-..+.++...|.
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~~--~~~a~~ALg~ig~ 250 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGTV--GDLIIEAAGELGD 250 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCch--HHHHHHHHHhcCC
Confidence 44444555443 23344444444442 4466677777777777777544444444444 4442 3356666777776
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007998 293 GPRALELFEQMGRAGVKPDDVSYLAALCACN 323 (582)
Q Consensus 293 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 323 (582)
. +|+..+.++.+. .||...-...+.+|.
T Consensus 251 ~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 K-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred H-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 4 577777776653 346555555555543
No 284
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.27 E-value=15 Score=34.02 Aligned_cols=60 Identities=15% Similarity=0.001 Sum_probs=34.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC
Q 007998 181 IAGLAQGNLASEAVDLFKRMKMEGVF-KPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240 (582)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~m~~~g~~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 240 (582)
+..-.+.|++++|.+.|+.+...-.. +-...+...++-++-+.+++++|....++.++.-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 34445667777777777777654211 1123344445555666666666666666666543
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.22 E-value=7.8 Score=37.41 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHHHh--c----CChHHHHHHHHHHHHcCC---CCchHHHHHHH
Q 007998 90 TNAVLWYRQMLRGSHRSDALTCSFALKACAR--V----LALFETLQIHSHVLRHGF---LADALLGTTLL 150 (582)
Q Consensus 90 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~g~---~~~~~~~~~li 150 (582)
++.+.+++.|.+.|.+-+.++|.+..-.... . .....+.++|+.|.+..+ .++..++.+|+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lL 148 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALL 148 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHH
Confidence 3456777788888888777776654433322 1 124456777777776542 23334444443
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.01 E-value=21 Score=35.32 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 377 TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS----NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 377 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
....+|..+...+++.|+++.|...+.++...++ ..+.....-+......|+..+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999988652 24567778889999999999999998887763
No 287
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.98 E-value=57 Score=40.14 Aligned_cols=310 Identities=12% Similarity=0.029 Sum_probs=168.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCCHHHHHHHHh-hcCCCChhHHHHHHHHHHhCCCh
Q 007998 114 ALKACARVLALFETLQIHSHVLRHGF--LADALLGTTLLDVYAKVGEIVSAKKVFD-EMGVRDIASWNALIAGLAQGNLA 190 (582)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~-~m~~~~~~~~~~li~~~~~~g~~ 190 (582)
+..+--+.+.+.+|...++.-..... ......+..+...|+.-+++|....+.. ....++. ..-|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccH
Confidence 33444566777777777766311000 1122345556668999999888887776 3434432 2345556678999
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcCCHHHHHHHHh
Q 007998 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC-NAVIDMYAKCGLLDKAFEVFD 269 (582)
Q Consensus 191 ~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~ 269 (582)
+.|..-|+++.+.+ ++...+++.++......+.++...-..+...... .+...-+ +.=+.+--+.++++..+....
T Consensus 1466 ~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999998876 5557788888887777777777666444443322 2222222 333444456666666655544
Q ss_pred cccCCCCHHHHHHH--HHHHHhCCC--hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH---------H
Q 007998 270 NIKCRKSLVTWNTM--VMAFAVHGD--GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF---------N 336 (582)
Q Consensus 270 ~~~~~~~~~~~~~l--i~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~---------~ 336 (582)
..+..+|.+. +....+..+ .-.-.+..+.+.+.-+. =+.+|+..|.+..+.++. +
T Consensus 1543 ----~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1543 ----DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred ----cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 2344445443 222222211 11111233333221111 122233222222221111 1
Q ss_pred HHhH--cCCccChhh------HH---hhhhHHhhcCCHHHHHH-HHHhCCCCC-----CHHHHHHHHHHHHhcCChHHHH
Q 007998 337 SMAN--CGVKPNMKH------YG---SVVDLLGRAGRLQEACD-IVKSVSMGT-----DMVLWQTLLGACQLYGDVEMAE 399 (582)
Q Consensus 337 ~~~~--~~~~~~~~~------~~---~li~~~~~~g~~~~A~~-~~~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~ 399 (582)
.+.+ .+..++..+ |. ..++-+.+....--|.+ .+.....+| -..+|-.....++..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 1111 222332221 11 11222222222222211 111111122 3568999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
...-.+.+..+ +..+.-.+......|+-..|..+++...+..
T Consensus 1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 98888877763 4688999999999999999999999887544
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.83 E-value=41 Score=38.25 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=53.8
Q ss_pred CCCHHH----HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh--
Q 007998 274 RKSLVT----WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM-- 347 (582)
Q Consensus 274 ~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-- 347 (582)
.|+... |.+...-+.+...+++|.-.|+..-+ .--.+.+|..+|+|.+|..+..++.. ..+.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHH
Confidence 455444 34444444556777777777665422 12356677778888888877776653 1121
Q ss_pred hhHHhhhhHHhhcCCHHHHHHHHHhCC
Q 007998 348 KHYGSVVDLLGRAGRLQEACDIVKSVS 374 (582)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 374 (582)
.+-..|+.-+...++.-+|-++..+..
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 222456677777788777777777663
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.54 E-value=23 Score=35.06 Aligned_cols=149 Identities=9% Similarity=0.018 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh--hh
Q 007998 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP---DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM--KH 349 (582)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 349 (582)
....+|..++..+.+.|.++.|...+.++...+..+ +......-....-..|+..+|...++......+..+. ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345567777888888888888888888776643111 1122222333445567777777777776662222211 11
Q ss_pred HHhhhhHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998 350 YGSVVDLLGRAGRLQEACDI-VKSVSMGTDMVLWQTLLGACQLY------GDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422 (582)
Q Consensus 350 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 422 (582)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111000000 00000000 00000000112222233333333 788889999999999999877777777766
Q ss_pred HHh
Q 007998 423 YAA 425 (582)
Q Consensus 423 ~~~ 425 (582)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
No 290
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.47 E-value=43 Score=38.05 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=27.8
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 007998 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221 (582)
Q Consensus 157 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~ 221 (582)
+++++|+.-+.++. ...|...+..--++|.+.+|+.++ +|+...+..+..+|+
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly---------~~~~e~~k~i~~~ya 946 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY---------KPDSEKQKVIYEAYA 946 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee---------ccCHHHHHHHHHHHH
Confidence 44555555555443 223444444444556666665553 566666665555543
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.13 E-value=0.9 Score=27.79 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMK 201 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~ 201 (582)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777776643
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.89 E-value=7.8 Score=34.18 Aligned_cols=56 Identities=18% Similarity=0.081 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRD------IASWNALIAGLAQGNLASEAVDLFKRM 200 (582)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 200 (582)
.+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|+.....+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455555555555555555555554321 223444455555555555555544444
No 293
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.56 E-value=9.8 Score=29.48 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007998 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202 (582)
Q Consensus 123 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 202 (582)
.-++|.-+-+.+...+-. ...+--.-+..+.+.|++++|..+.+.+..||...|-++-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 355666666666555422 33333344566788999999999999999999999988765 467777777778888888
Q ss_pred cCCCCCCHHHHHH
Q 007998 203 EGVFKPNEVTVLG 215 (582)
Q Consensus 203 ~g~~~pd~~t~~~ 215 (582)
.| .|...+|..
T Consensus 97 sg--~p~lq~Faa 107 (115)
T TIGR02508 97 SG--DPRLQTFVA 107 (115)
T ss_pred CC--CHHHHHHHH
Confidence 87 666666544
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.20 E-value=3.6 Score=35.19 Aligned_cols=68 Identities=19% Similarity=0.137 Sum_probs=33.3
Q ss_pred hcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998 359 RAGRLQEACDIVKSV-SMGTD---MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428 (582)
Q Consensus 359 ~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (582)
+.++.+++..++..+ -.+|. ..++... .+...|++.+|.++++.+.+..|..+..-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 445566666665555 22232 2222222 23455666666666666655555544444444444444443
No 295
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.92 E-value=11 Score=29.29 Aligned_cols=88 Identities=14% Similarity=0.213 Sum_probs=62.5
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998 225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304 (582)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 304 (582)
..++|..|-+.+...+-. ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-YPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-CchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 457777777776655422 33333444566788999999999999998 999999987754 46677777777787887
Q ss_pred hcCCCCCHHHHHH
Q 007998 305 RAGVKPDDVSYLA 317 (582)
Q Consensus 305 ~~g~~p~~~t~~~ 317 (582)
..| .|...+|..
T Consensus 96 ~sg-~p~lq~Faa 107 (115)
T TIGR02508 96 ASG-DPRLQTFVA 107 (115)
T ss_pred hCC-CHHHHHHHH
Confidence 765 555555543
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.64 E-value=5.6 Score=35.10 Aligned_cols=63 Identities=5% Similarity=-0.064 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998 74 NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDA--LTCSFALKACARVLALFETLQIHSHVLR 136 (582)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 136 (582)
..+..+...|.+.|+.++|++.|.++.+....|.. ..+..+++.+...+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 36778888888888888899888888876544433 3567777888888888888777766654
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.49 E-value=27 Score=33.39 Aligned_cols=18 Identities=11% Similarity=0.147 Sum_probs=11.2
Q ss_pred HHcCCCHHHHHHHHHHHh
Q 007998 322 CNHAGLVDDGVRLFNSMA 339 (582)
Q Consensus 322 ~~~~g~~~~a~~~~~~~~ 339 (582)
+.+.++++.|.+.|+...
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 445677777777666443
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.28 E-value=3.8 Score=34.43 Aligned_cols=51 Identities=16% Similarity=0.055 Sum_probs=26.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 392 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
.++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.+++....+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 445555555555555555555554445555555555555555555554443
No 299
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.17 E-value=36 Score=34.39 Aligned_cols=332 Identities=10% Similarity=0.018 Sum_probs=178.0
Q ss_pred CCHHHHHHHHhcCCC------------------CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCC----CCChhHHHH
Q 007998 56 NELAYAHALFRQINA------------------PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH----RSDALTCSF 113 (582)
Q Consensus 56 g~~~~A~~~f~~~~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~ 113 (582)
+.+..|.+.|..-.. +|.+-=+..+..+...|++.++..++++|...=. .-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 888888888765421 1112224566778889999999999999876433 367788888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH---cCCCCchHHHHHHHHHHHhcCC--------------------------------
Q 007998 114 ALKACARVLALFETLQIHSHVLR---HGFLADALLGTTLLDVYAKVGE-------------------------------- 158 (582)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~li~~y~~~g~-------------------------------- 158 (582)
++-.+++. .+-++.+ ..+-|| |--+|-.|.+.=.
T Consensus 173 ~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l 241 (549)
T PF07079_consen 173 AVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERL 241 (549)
T ss_pred HHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhc
Confidence 55544432 2222211 112222 1222333322211
Q ss_pred --HHHHHHHHhhc-CCCC-hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCCCHHHHHHHHHHHhccCCcHHHHH
Q 007998 159 --IVSAKKVFDEM-GVRD-IASWNALIAGLAQGNLASEAVDLFKRMKMEGV---FKPNEVTVLGALAACGHLGAWKEGDK 231 (582)
Q Consensus 159 --~~~A~~~f~~m-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~pd~~t~~~ll~a~~~~~~~~~a~~ 231 (582)
+-.+.+.++.- ..|+ ...-..|+..+.+ +.+++..+-+.+....+ .+-=..+|..++..+.+.++...|.+
T Consensus 242 ~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q 319 (549)
T PF07079_consen 242 PPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQ 319 (549)
T ss_pred cHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11111111111 0121 1122334444444 55666655555543322 01224578999999999999999999
Q ss_pred HHHHHHHcCCCCchhHHH-------HHHHHHHhcC----CHHHHHHHHhcccCCCCHHH---HHHHHH---HHHhCCC-h
Q 007998 232 IHEYIREERLDMNVVVCN-------AVIDMYAKCG----LLDKAFEVFDNIKCRKSLVT---WNTMVM---AFAVHGD-G 293 (582)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~-------~li~~y~~~g----~~~~A~~~~~~~~~~~~~~~---~~~li~---~~~~~g~-~ 293 (582)
.+.-+.-. +|+..+-. .+.++.+.-. ++.+=..+++... ..|+.. -.-|+. -+-+.|. -
T Consensus 320 ~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~q-s~DiDrqQLvh~L~~~Ak~lW~~g~~d 396 (549)
T PF07079_consen 320 YLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQ-SYDIDRQQLVHYLVFGAKHLWEIGQCD 396 (549)
T ss_pred HHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHH-hhcccHHHHHHHHHHHHHHHHhcCCcc
Confidence 99877664 44444332 2233333111 1222233333333 223221 111222 2334455 7
Q ss_pred hHHHHHHHHHHhcCCCCCH-HHHHHH----HHHHHc---CCCHHHHHHHHHHHhHcCCccC----hhhHHhhhhH--Hhh
Q 007998 294 PRALELFEQMGRAGVKPDD-VSYLAA----LCACNH---AGLVDDGVRLFNSMANCGVKPN----MKHYGSVVDL--LGR 359 (582)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~-~t~~~l----l~a~~~---~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~--~~~ 359 (582)
++|+.+++...+ +.|.. ..-+.+ =.+|.+ ...+.+-.++-+-+.+.|++|- .+.-|.|.++ +..
T Consensus 397 ekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 397 EKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred HHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 899999998886 34433 222222 223322 2334444444444445777763 4556666654 456
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998 360 AGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405 (582)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 405 (582)
.|++.++.-.-.-. .+.|++.+|+-+.-......++++|...+..+
T Consensus 475 qgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 78888876443322 56789999998888888889999998888755
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.00 E-value=8.6 Score=33.23 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=22.8
Q ss_pred hcCCHHHHHHHHhcccCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 257 KCGLLDKAFEVFDNIKCRKS---LVTWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 257 ~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
..|.+++.....+.+..+.+ ...-.+|.-+-.+.|++.+|.+.|..+.+
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44555555555544431111 12233344444455555555555555544
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.87 E-value=1.5 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 278 VTWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666667777777777777766665
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.08 E-value=8.1 Score=36.72 Aligned_cols=97 Identities=12% Similarity=0.210 Sum_probs=71.0
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCC--------CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC
Q 007998 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK--------SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311 (582)
Q Consensus 240 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 311 (582)
|.+....+...++..-....+++++...+-++...| ...+|-.++. .-++++++.++..=+..|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 444455555666666666778888888877665222 2333433333 3467789988888888999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998 312 DVSYLAALCACNHAGLVDDGVRLFNSMAN 340 (582)
Q Consensus 312 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 340 (582)
..|+..+++.+.+.+++.+|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999888877776
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.76 E-value=2.4 Score=26.48 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998 381 LWQTLLGACQLYGDVEMAEIASRKLVE 407 (582)
Q Consensus 381 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 407 (582)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455555555666666666666655554
No 304
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.35 E-value=33 Score=31.41 Aligned_cols=52 Identities=10% Similarity=-0.033 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHhC-----CCCCCHHHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 361 GRLQEACDIVKSV-----SMGTDMVLWQTLL---GACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 361 g~~~~A~~~~~~~-----~~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
.++++|+..|+.. +.+.+...-..++ ..-...+++.+|+.+|+++.....++
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555666655544 1122222223333 23356788999999999988765544
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.28 E-value=16 Score=38.09 Aligned_cols=165 Identities=12% Similarity=0.040 Sum_probs=94.5
Q ss_pred CChhHHHHHHHH-----HHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHH
Q 007998 71 PSTNDFNAVLRG-----LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL 145 (582)
Q Consensus 71 ~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 145 (582)
-++.+|..++.. ..-.|+++.|-.++.... ...-+.+...+.++|..++|+++ ..+||..
T Consensus 579 ~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~-------s~D~d~r- 643 (794)
T KOG0276|consen 579 LNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL-------STDPDQR- 643 (794)
T ss_pred cceEeEeeehHHHHHHHHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc-------CCChhhh-
Confidence 355555444332 233466666665544332 22334445555555555555442 2223221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC
Q 007998 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225 (582)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~ 225 (582)
-....+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+... |..++-.+...|+
T Consensus 644 ----Felal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~ 707 (794)
T KOG0276|consen 644 ----FELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGN 707 (794)
T ss_pred ----hhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCC
Confidence 12344667777777765443 3556788888888888888888877766543 3455666666677
Q ss_pred cHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc
Q 007998 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272 (582)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 272 (582)
.+....+-....+.|.. | .-..+|...|+++++.+++.+-.
T Consensus 708 ~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 708 AEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred hhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 66655555555665532 2 22345667888888888887654
No 306
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.24 E-value=39 Score=36.60 Aligned_cols=68 Identities=12% Similarity=-0.079 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh-------HHHHHHHHHHHHcCCCCch
Q 007998 74 NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL-------FETLQIHSHVLRHGFLADA 143 (582)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~ 143 (582)
..| ++|-.|.|.|++++|.++....... .......|...+..+....+- +....-+.+..+...+.|+
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 355 7888899999999999999665543 455566788888888765332 2444555555554433344
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.19 E-value=1.8 Score=26.04 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=11.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHH
Q 007998 244 NVVVCNAVIDMYAKCGLLDKAF 265 (582)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~ 265 (582)
+...|+.|...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555555555543
No 308
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.94 E-value=2.5 Score=40.46 Aligned_cols=109 Identities=10% Similarity=0.065 Sum_probs=74.6
Q ss_pred HHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChH
Q 007998 320 CACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVE 396 (582)
Q Consensus 320 ~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~ 396 (582)
+-|.++|.+++|+..|..... +.| +..++..-..+|.+..++..|+.-.... .+. .-...|.--..+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 458889999999999988776 335 7777777778899999988887655543 211 11234444445555678899
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHH
Q 007998 397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434 (582)
Q Consensus 397 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 434 (582)
+|.+-++.+++++|.+. -|-..|.+.....++.-
T Consensus 183 EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I 216 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNI----ELKKSLARINSLRERKI 216 (536)
T ss_pred HHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhH
Confidence 99999999999999753 34444555554444433
No 309
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.85 E-value=40 Score=31.96 Aligned_cols=59 Identities=10% Similarity=-0.108 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 382 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
++.....|...|.+.+|.++.++++.++|-+...+-.|.+.++..|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445788999999999999999999999999999999999999999888888887775
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.73 E-value=2.3 Score=24.88 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=15.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998 385 LLGACQLYGDVEMAEIASRKLVEMGSN 411 (582)
Q Consensus 385 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 411 (582)
+..++...|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344555566666666666666666553
No 311
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.52 E-value=71 Score=34.63 Aligned_cols=209 Identities=16% Similarity=0.103 Sum_probs=86.2
Q ss_pred HHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCc-------hHHHHHHHHHHhCCCCCChh--HHHHH
Q 007998 48 EFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKP-------TNAVLWYRQMLRGSHRSDAL--TCSFA 114 (582)
Q Consensus 48 ~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p~~~--~~~~l 114 (582)
++|=.+.| |.+++|.++..... .+....+-..+..|..+.+- ++...-|++..+.....|++ ..-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 67777778 99999999993322 33445677888888775332 35566677776654433554 22223
Q ss_pred HHHHHhcCC--------hHHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH
Q 007998 115 LKACARVLA--------LFETLQIHSHVLRHGFL-----ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181 (582)
Q Consensus 115 l~~~~~~~~--------~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 181 (582)
|..|-.... ++.=+.+.=.+++.... .+..++..|-+...+-| .+.|.. ..+...| .
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~Y---f 265 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLLY---F 265 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT--------H---H
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHHH---H
Confidence 332322111 11111111111111110 11223322222221111 122222 1122222 3
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHh---
Q 007998 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAK--- 257 (582)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~--- 257 (582)
..+.-.|+++.|++.+.+ ..+. +.|.+.+...+.-+.-.+-.+... ..+.... -.|..--+..||..|.+
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~-~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFN-RVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T--HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccC-cccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 344567888888888776 2233 566666666666554333222211 2222111 01111445667777776
Q ss_pred cCCHHHHHHHHhccc
Q 007998 258 CGLLDKAFEVFDNIK 272 (582)
Q Consensus 258 ~g~~~~A~~~~~~~~ 272 (582)
..+..+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 346777777776665
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.45 E-value=11 Score=33.74 Aligned_cols=72 Identities=14% Similarity=0.003 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCchHHHHHHHHHHHhcCCHHHH
Q 007998 90 TNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG---FLADALLGTTLLDVYAKVGEIVSA 162 (582)
Q Consensus 90 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A 162 (582)
++|...|-.+...+.--++.....+.. |-...+.+++++++-.+++.. -.+|+.++.+|++.|.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 355555555555443323333333333 333455666666665555421 234555666666666666665555
No 313
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.25 E-value=52 Score=35.16 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc-CCchHHHHHHHHHHhCCCc
Q 007998 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY-ERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~ 445 (582)
.+.+.|...++++-+.++ +.+...+...+.-. ++++.+.-.+..+.+.+..
T Consensus 378 r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 356667777777766662 22233333333211 6666666666666665554
No 314
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.61 E-value=4 Score=27.59 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=26.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416 (582)
Q Consensus 384 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 416 (582)
.+.-++.+.|+++.|.+..+.+++.+|+|..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455688999999999999999999999886543
No 315
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.39 E-value=1.4e+02 Score=37.12 Aligned_cols=355 Identities=8% Similarity=-0.035 Sum_probs=162.5
Q ss_pred HHhcCCC-CCHHHHHHHHhc----CCCCCh--hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 007998 49 FYALSPL-NELAYAHALFRQ----INAPST--NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121 (582)
Q Consensus 49 li~~y~~-g~~~~A~~~f~~----~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 121 (582)
|..+--+ +.+..|.-.|++ ..+.+. .-|-.+...|+.-++++....+...-. .+...+ .-|-.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHHHhh
Confidence 3334344 777777777777 222221 223444457888888877766665311 122222 233344566
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHH-HHHHHhCCChhHHHHHH
Q 007998 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR---DIASWNAL-IAGLAQGNLASEAVDLF 197 (582)
Q Consensus 122 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~l-i~~~~~~g~~~~A~~~~ 197 (582)
|++..|...|+.+.+.+. +....++.++..-...|.+..+....+..... ....|+++ +.+-.+.++++......
T Consensus 1463 g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 788888888888876642 22445555555444556666666655555322 22333333 23335666666655554
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhcc--CCcHHHHHHHHHHH--------HcCCC-CchhHHHHHHHHHHhcCCHHHHHH
Q 007998 198 KRMKMEGVFKPNEVTVLGALAACGHL--GAWKEGDKIHEYIR--------EERLD-MNVVVCNAVIDMYAKCGLLDKAFE 266 (582)
Q Consensus 198 ~~m~~~g~~~pd~~t~~~ll~a~~~~--~~~~~a~~~~~~~~--------~~~~~-~~~~~~~~li~~y~~~g~~~~A~~ 266 (582)
. ..+ ..+-.+. .+.....+. .+.-.-....+.+. ..+.. .-...|..++....-+.--.. .+
T Consensus 1542 ~---~~n--~e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~-~~ 1614 (2382)
T KOG0890|consen 1542 S---DRN--IEYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS-IE 1614 (2382)
T ss_pred h---ccc--ccchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4 111 0111111 011111111 11100001111111 11111 112344444444433322222 22
Q ss_pred HHhccc----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH-hcCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHH
Q 007998 267 VFDNIK----CRKSLVTWNTMVMAFAVHGDGPRALELFEQMG-RAGVKPD-----DVSYLAALCACNHAGLVDDGVRLFN 336 (582)
Q Consensus 267 ~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~ 336 (582)
...... ..-+..-|-.-+.--....+..+-+--+++.. .....|+ ..+|....+.+...|.++.|....-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 222221 01111223332221111111222222232221 1112222 2467777777888899988888777
Q ss_pred HHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-----C-----CCCCHHHHHHHHHH--------H-Hhc--CCh
Q 007998 337 SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-----S-----MGTDMVLWQTLLGA--------C-QLY--GDV 395 (582)
Q Consensus 337 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~-----~~p~~~~~~~ll~~--------~-~~~--g~~ 395 (582)
...+.+ .|. .+--....+-..|+-..|+.++++. + .++.+..-+.++.. | ... -..
T Consensus 1695 ~A~e~r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1695 NAKESR-LPE--IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred hhhhcc-cch--HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH
Confidence 666643 333 3445567777888888888887654 1 11112222222211 1 122 234
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHH
Q 007998 396 EMAEIASRKLVEMGSNNCGDFVLLS 420 (582)
Q Consensus 396 ~~a~~~~~~~~~~~p~~~~~~~~l~ 420 (582)
+..++.|.++.+..|.....|..++
T Consensus 1772 ~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHHHHHHcccccCceeeHH
Confidence 5566777777777775544444444
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.66 E-value=10 Score=29.20 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=36.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419 (582)
Q Consensus 370 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 419 (582)
+-.+..-|++.+..+.+.+|++.+++..|.++++-+...-..+...|-.+
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 33446678889999999999999999999999998775443333344433
No 317
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.93 E-value=1.9 Score=36.50 Aligned_cols=49 Identities=4% Similarity=-0.052 Sum_probs=21.8
Q ss_pred HHhcCCC-CCHHHHHHHHhcCC----CCChhHHHHHHHHHHcCCCchHHHHHHH
Q 007998 49 FYALSPL-NELAYAHALFRQIN----APSTNDFNAVLRGLAHSSKPTNAVLWYR 97 (582)
Q Consensus 49 li~~y~~-g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 97 (582)
+|+.|.+ +.++...+.++.+. ..+....+.++..|++.+..+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3444444 44444443333332 2234445555555555555455555444
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.92 E-value=2.2 Score=23.81 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHH
Q 007998 414 GDFVLLSNLYAAYERWDDVGRVRK 437 (582)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~a~~~~~ 437 (582)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777777654
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.73 E-value=41 Score=29.92 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=60.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHhHcCCccChhhHH-----hhhhHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 007998 319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG-----SVVDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQLY 392 (582)
Q Consensus 319 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~ 392 (582)
...+...+++++|...++..... |....+. .|.......|.+++|+..++...-+. ....-..-.+.+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 44567788888888888877752 2222222 34566778899999999998764211 111122233677888
Q ss_pred CChHHHHHHHHHHHHcCCC
Q 007998 393 GDVEMAEIASRKLVEMGSN 411 (582)
Q Consensus 393 g~~~~a~~~~~~~~~~~p~ 411 (582)
|+-++|...|++.++.++.
T Consensus 173 g~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 173 GDKQEARAAYEKALESDAS 191 (207)
T ss_pred CchHHHHHHHHHHHHccCC
Confidence 9999999999999888753
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.67 E-value=12 Score=29.16 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=33.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419 (582)
Q Consensus 370 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 419 (582)
+-.+..-|++.+..+.+.+|++.+++..|.++++-+...-.+....|-.+
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 33445678999999999999999999999999998877654333355444
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.16 E-value=4.3 Score=25.30 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998 278 VTWNTMVMAFAVHGDGPRALELFEQMG 304 (582)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 304 (582)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345666666666666666666666554
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.04 E-value=95 Score=33.75 Aligned_cols=151 Identities=14% Similarity=0.122 Sum_probs=81.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC---chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHH
Q 007998 117 ACARVLALFETLQIHSHVLRHGFLA---DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193 (582)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 193 (582)
.+.+.+.+++|..+..... |..| -..++...|+.+.-.|++++|-...-.|-..+..-|.-.+.-+...++....
T Consensus 365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 3444455566655443322 2222 2345667777777777777777777777666666676666666666655443
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc-------------------CCCCchhHHHHHHHH
Q 007998 194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE-------------------RLDMNVVVCNAVIDM 254 (582)
Q Consensus 194 ~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~li~~ 254 (582)
..+ +. .|..+.++..|..++..+.. .+. ..+++.+.+. ...-+...-..|+..
T Consensus 443 a~~---lP-t~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 443 APY---LP-TGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred hcc---CC-CCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence 222 11 11101234445555544443 111 1111111110 001123344558899
Q ss_pred HHhcCCHHHHHHHHhcccCCCCHH
Q 007998 255 YAKCGLLDKAFEVFDNIKCRKSLV 278 (582)
Q Consensus 255 y~~~g~~~~A~~~~~~~~~~~~~~ 278 (582)
|...+++.+|.+.+-... .+++.
T Consensus 515 Yl~d~~Y~~Al~~ylklk-~~~vf 537 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQ-DKDVF 537 (846)
T ss_pred HHHccChHHHHHHHHhcc-ChHHH
Confidence 999999999999998887 55543
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.97 E-value=14 Score=28.43 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 007998 91 NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150 (582)
Q Consensus 91 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 150 (582)
+..+-++.+....+.|++......++||.+.+|+..|..+++-+.... ..+..+|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 445555666666778888888888888888888888888888766322 11333555444
No 324
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.85 E-value=5.1 Score=23.57 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKME 203 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 203 (582)
.|..+...|.+.|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566666777777777777777776654
No 325
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.83 E-value=23 Score=29.30 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHH-cCCCCc-hhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 394 DVEMAEIASRKLVE-MGSNNC-GDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 394 ~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
+..+++.+++.+.+ -.|... .....|+-++.+.|+++.++++.+.+.+.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34556666666665 233322 23334555566666666666666655543
No 326
>PRK10941 hypothetical protein; Provisional
Probab=79.52 E-value=11 Score=35.79 Aligned_cols=63 Identities=17% Similarity=0.032 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 381 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
..+.|-.+|.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345666788999999999999999999999999888889999999999999999888776543
No 327
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.42 E-value=3.5 Score=23.21 Aligned_cols=29 Identities=24% Similarity=0.130 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998 382 WQTLLGACQLYGDVEMAEIASRKLVEMGS 410 (582)
Q Consensus 382 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 410 (582)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44445555555666666666666555544
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.39 E-value=0.81 Score=38.77 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=47.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHH
Q 007998 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193 (582)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 193 (582)
++..+.+.+.+....++++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444445556666666666666655455566777777777777766666666663322 2223445555556666666
Q ss_pred HHHHHHH
Q 007998 194 VDLFKRM 200 (582)
Q Consensus 194 ~~~~~~m 200 (582)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555554
No 329
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.35 E-value=42 Score=29.22 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=47.6
Q ss_pred HHHhcCCHHHHHHHHhccc-C--CCCHH-HHHHH--HHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 007998 254 MYAKCGLLDKAFEVFDNIK-C--RKSLV-TWNTM--VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL 327 (582)
Q Consensus 254 ~y~~~g~~~~A~~~~~~~~-~--~~~~~-~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 327 (582)
.....|+...|...|+++. . .|-+. -.-.| .-.+..+|.+++.....+.+-..+-+.-...--.|.-+-.+.|+
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 3455666666666666654 1 11111 00111 12345677777777766666544433333334445555667788
Q ss_pred HHHHHHHHHHHhH
Q 007998 328 VDDGVRLFNSMAN 340 (582)
Q Consensus 328 ~~~a~~~~~~~~~ 340 (582)
+..|.+.|..+..
T Consensus 183 ~a~A~~~F~qia~ 195 (221)
T COG4649 183 FAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHHHHc
Confidence 8888888877776
No 330
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.24 E-value=14 Score=28.82 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhh
Q 007998 295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVD 355 (582)
Q Consensus 295 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 355 (582)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+-+.. .| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556666666677889999999999999999999999999988877 44 22336666553
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.20 E-value=1.1e+02 Score=33.92 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=96.0
Q ss_pred HHhcCCHHHHHHHHhccc---CCCCH-------HHHHHHHHH-HHhCCChhHHHHHHHHHHhc----CCCCCHHHHHHHH
Q 007998 255 YAKCGLLDKAFEVFDNIK---CRKSL-------VTWNTMVMA-FAVHGDGPRALELFEQMGRA----GVKPDDVSYLAAL 319 (582)
Q Consensus 255 y~~~g~~~~A~~~~~~~~---~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll 319 (582)
.....++++|..+..+.. ..|+. ..|+++-.- ....|++++|+++-+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 334566777777666442 02221 245554332 23457777777777766553 1123334555566
Q ss_pred HHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhh-----hHHhhcCCHHH--HHHHHHhC-----CCCC----CHHHHH
Q 007998 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV-----DLLGRAGRLQE--ACDIVKSV-----SMGT----DMVLWQ 383 (582)
Q Consensus 320 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~--A~~~~~~~-----~~~p----~~~~~~ 383 (582)
.+..-.|++++|..+..+..+..-.-+..++..++ ..+...|.... .+..|... +-+| -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 66666778887777766665522123333332222 22344552222 22222211 1112 123334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC----CCCch---hHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccE
Q 007998 384 TLLGACQLYGDVEMAEIASRKLVEMG----SNNCG---DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSY 452 (582)
Q Consensus 384 ~ll~~~~~~g~~~~a~~~~~~~~~~~----p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 452 (582)
.++.++.+ ++.+..-.....+.+ |.... .+..|+.++...|+.++|.....++........++..|
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 44444433 455554444444432 22111 22366777778888888888877777554443333333
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.41 E-value=17 Score=32.38 Aligned_cols=72 Identities=13% Similarity=0.020 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-c-C-CccChhhHHhhhhHHhhcCCHHHH
Q 007998 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-C-G-VKPNMKHYGSVVDLLGRAGRLQEA 366 (582)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~-~-~~~~~~~~~~li~~~~~~g~~~~A 366 (582)
++|...|-++...+.--+......|...| ...+.+++..++....+ . + -.+|+..+.+|+..|-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34555555554444332322222222222 24455555555555544 1 1 134444555555555555554444
No 333
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.85 E-value=32 Score=27.11 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=57.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200 (582)
Q Consensus 121 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 200 (582)
....++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456788888888877763 344444455667888999999955555556788888877654 4788888888888888
Q ss_pred HHcCCCCCCHHHHH
Q 007998 201 KMEGVFKPNEVTVL 214 (582)
Q Consensus 201 ~~~g~~~pd~~t~~ 214 (582)
-..| .|....|.
T Consensus 96 a~~g--~~~~q~Fa 107 (116)
T PF09477_consen 96 ASSG--SPELQAFA 107 (116)
T ss_dssp CT-S--SHHHHHHH
T ss_pred HhCC--CHHHHHHH
Confidence 7666 45444443
No 334
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.77 E-value=15 Score=24.86 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 007998 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGY 491 (582)
Q Consensus 415 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 491 (582)
....++.++.+.|++++|.+..+.+.+.. |+...+......+...|+..|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e--------------------------P~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE--------------------------PDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------------------TS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC--------------------------CCcHHHHHHHHHHHHHHhccCC
Confidence 34578889999999999999999887643 4456666666667777777663
No 335
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=77.77 E-value=47 Score=28.88 Aligned_cols=132 Identities=11% Similarity=0.073 Sum_probs=88.6
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998 61 AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL 140 (582)
Q Consensus 61 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 140 (582)
.+.+.+.-..++...|..+|..+.+.|++. .+.+++..++-||+......+-.... ....+.++--+|.++= .
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL-~ 89 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL-G 89 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh-h
Confidence 344444444577779999999999999864 45566667788888777666544433 3455666666666541 1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007998 141 ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202 (582)
Q Consensus 141 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 202 (582)
..+..++..+...|++-+|.+.......-+...-..++.+..+.++..--..+|+-..+
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13455778889999999999999886555555556677777777776665555555544
No 336
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.43 E-value=9.9 Score=33.17 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC----chHHHHHHHHH
Q 007998 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER----WDDVGRVRKAM 439 (582)
Q Consensus 395 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 439 (582)
+++|+.-|++++.++|+...++..++++|...+. ..+|...|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5677788888889999999999999999987654 33444444443
No 337
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=76.26 E-value=55 Score=28.96 Aligned_cols=58 Identities=19% Similarity=0.364 Sum_probs=41.9
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcC--------------CCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007998 214 LGALAACGHLGAWKEGDKIHEYIREER--------------LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271 (582)
Q Consensus 214 ~~ll~a~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 271 (582)
.+++..|-+.-++.+++++++.+-+.. ..+--.+.|.-...+.++|.+|.|..++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 456667778888888888888776542 2234456677778888888888888888754
No 338
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.27 E-value=50 Score=27.97 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=26.8
Q ss_pred cCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCC
Q 007998 324 HAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374 (582)
Q Consensus 324 ~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 374 (582)
..++.+++..++..|.- +.-.+...++. .-.+.+.|++++|..+|++..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELL 71 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhh
Confidence 35666666666666655 22222233332 233556677777777777763
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.13 E-value=3.5 Score=24.09 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 415 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
++..++.+|.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46778999999999999999999988654
No 340
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.25 E-value=72 Score=29.33 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHhH--cCCccChhhHHhhhh---HHhhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHH--HHH-h
Q 007998 326 GLVDDGVRLFNSMAN--CGVKPNMKHYGSVVD---LLGRAGRLQEACDIVKSV---SMGTDMVLWQT---LLG--ACQ-L 391 (582)
Q Consensus 326 g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~--~~~-~ 391 (582)
.+++.|+..|+..-+ .|-+.+...--+++. .-+..+++.+|.++|+++ ....+..-|.. ++. .|. -
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 566667777776666 232233322233332 234678888899998876 22223333322 221 222 2
Q ss_pred cCChHHHHHHHHHHHHcCCC
Q 007998 392 YGDVEMAEIASRKLVEMGSN 411 (582)
Q Consensus 392 ~g~~~~a~~~~~~~~~~~p~ 411 (582)
..+.-.+...+++..+++|.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPA 227 (288)
T ss_pred cccHHHHHHHHHHHHhcCCc
Confidence 25777788888888899985
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.95 E-value=6.8 Score=23.09 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 414 GDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
.+|..++.+|...|++++|...+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998764
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.88 E-value=6.9 Score=21.74 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHh
Q 007998 249 NAVIDMYAKCGLLDKAFEVFD 269 (582)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~~~ 269 (582)
..+...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555566666666665554
No 343
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.76 E-value=1.2e+02 Score=31.48 Aligned_cols=165 Identities=9% Similarity=0.060 Sum_probs=88.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007998 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322 (582)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 322 (582)
|-...-++++.++...+.+-.+.+-.+|. ...+-..+..++..|.++ ..++-..+|+++.+.. -|.+.+..-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 44445556666666666666665555554 234555666677777766 4566667777666642 2344444434334
Q ss_pred HcCCCHHHHHHHHHHHhHcCCcc-----ChhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC
Q 007998 323 NHAGLVDDGVRLFNSMANCGVKP-----NMKHYGSVVDLLGRAGRLQEACDIVKSV----SMGTDMVLWQTLLGACQLYG 393 (582)
Q Consensus 323 ~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g 393 (582)
...++.+.+..+|.++...=++. -.+.|..|+..- ..+.+..+.+...+ +...-.+.+..+-.-|....
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 44466666666666665522210 123444444322 23444444444433 22223444455555666677
Q ss_pred ChHHHHHHHHHHHHcCCCCc
Q 007998 394 DVEMAEIASRKLVEMGSNNC 413 (582)
Q Consensus 394 ~~~~a~~~~~~~~~~~p~~~ 413 (582)
++.+|++++..+++.+..|.
T Consensus 220 N~~eai~Ilk~il~~d~k~~ 239 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDV 239 (711)
T ss_pred CHHHHHHHHHHHhhhcchhh
Confidence 77777777777777665443
No 344
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.27 E-value=30 Score=33.09 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=69.2
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C--------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 007998 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-R--------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK 207 (582)
Q Consensus 137 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 207 (582)
.|.+....+...++..-....++++++..+-++.. + ...+|--++. .-++++++.++..=++-|+ -
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGi-F 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGI-F 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcc-c
Confidence 44454555556666666667778888777666542 1 2333333332 3367788888888888898 8
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC
Q 007998 208 PNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240 (582)
Q Consensus 208 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 240 (582)
||.+++..++..+.+.+++..|.++...|+...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888777553
No 345
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.26 E-value=1.9e+02 Score=33.23 Aligned_cols=258 Identities=9% Similarity=-0.075 Sum_probs=137.5
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC
Q 007998 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240 (582)
Q Consensus 161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 240 (582)
....+...+..+|...--..+..+.+.+. +++...+.+... .+|...-...+.++.+.+........+..+++.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~----D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~- 695 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG----DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS- 695 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC-
Confidence 33455556667777777777777777665 445555555553 334443344555554443211112233333332
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320 (582)
Q Consensus 241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (582)
+|..+-...++++...+.- ....+...+. .+|...-...+.++...+..+. +.... -.+|...-.....
T Consensus 696 --~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~-D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~ 764 (897)
T PRK13800 696 --PDPVVRAAALDVLRALRAG-DAALFAAALG-DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAK 764 (897)
T ss_pred --CCHHHHHHHHHHHHhhccC-CHHHHHHHhc-CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHH
Confidence 4666666666766654422 1234445555 7777766667777776655432 12222 2445555555566
Q ss_pred HHHcCCCHHH-HHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007998 321 ACNHAGLVDD-GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399 (582)
Q Consensus 321 a~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 399 (582)
++...+..+. +...+..+.. .++...-...+.++.+.|..+.+...+..+-..+|..+=...+.++...+. +++.
T Consensus 765 aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~ 840 (897)
T PRK13800 765 GLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAV 840 (897)
T ss_pred HHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchH
Confidence 6666554432 2344444443 456677777888888888765554444333224566565666677776665 3455
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
..+..+++ +| +...-...+.++.+.+.-..+...+....+
T Consensus 841 ~~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 841 PALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 55555543 23 344445555556554333455555555443
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.16 E-value=13 Score=35.81 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=61.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhc--
Q 007998 284 VMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA-- 360 (582)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 360 (582)
..-|.+.|.+++|+..|.+-.. +.| |.+++..-..+|.+...+..|+.=....+.. | ...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHHHHHHH
Confidence 4569999999999999998776 466 8899998899999999988887766666541 1 2345566654
Q ss_pred -----CCHHHHHHHHHhC-CCCCCH
Q 007998 361 -----GRLQEACDIVKSV-SMGTDM 379 (582)
Q Consensus 361 -----g~~~~A~~~~~~~-~~~p~~ 379 (582)
|...+|.+-++.. .++|+.
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4555555555443 556653
No 347
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.95 E-value=56 Score=34.29 Aligned_cols=103 Identities=23% Similarity=0.203 Sum_probs=66.5
Q ss_pred HHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 007998 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR 333 (582)
Q Consensus 254 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 333 (582)
...+.|+++.|.++..+.. +..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 646 lal~lgrl~iA~~la~e~~---s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN---SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc---chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3456788888877766554 667788888888888888888888876553 3445555666666654444
Q ss_pred HHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCC
Q 007998 334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374 (582)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 374 (582)
+-....+.| ..| .-.-+|...|+++++.+++.+-+
T Consensus 714 la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 714 LASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 444444444 122 22234666788888888877663
No 348
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.82 E-value=1e+02 Score=30.88 Aligned_cols=117 Identities=10% Similarity=0.063 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhH-cC--CccChhhHHhhhhHHhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHH-
Q 007998 313 VSYLAALCACNHAGLVDDGVRLFNSMAN-CG--VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM-GT-DMVLWQTLL- 386 (582)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll- 386 (582)
.|+..+-..|.+.|+.+.|.++.++..- .+ +.|.- .....- ...|. .+++. .+ |...|.++.
T Consensus 41 dtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F---~~~~~~-~~~g~--------~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 41 DTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSF---SPFRSN-LTSGN--------CRLDYRRPENRQFFLALFR 108 (360)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh---hhhhcc-cccCc--------cccCCccccchHHHHHHHH
Confidence 4666666677777777777777776653 11 00000 000000 00000 01111 12 555665554
Q ss_pred --HHHHhcCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHH-hcCCchHHHHHHHHHHh
Q 007998 387 --GACQLYGDVEMAEIASRKLVEMGSN-NCGDFVLLSNLYA-AYERWDDVGRVRKAMKN 441 (582)
Q Consensus 387 --~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 441 (582)
..+.+.|-+..|.+..+-++.++|. ||-.....++.|+ ++++++--.++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 5678899999999999999999998 8888888888886 77888888888887654
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.74 E-value=21 Score=36.03 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=55.2
Q ss_pred CCChhHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHH
Q 007998 290 HGDGPRAL-ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368 (582)
Q Consensus 290 ~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 368 (582)
.|+.-.|- +++.-+....-.|+.+...+.+ +.+.|+++.+.+.+..... -+.....+..+++....+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34444333 2333333333344444333322 3455666666555554443 112333444555555556666666666
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998 369 IVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411 (582)
Q Consensus 369 ~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 411 (582)
.-+-| +.+ .++.+...........|-++++...+++++.++|+
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 55544 111 13333333333344455566666666666665543
No 350
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.55 E-value=18 Score=33.20 Aligned_cols=81 Identities=12% Similarity=0.139 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998 361 GRLQEACDIVKS-VSMGTDM-VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438 (582)
Q Consensus 361 g~~~~A~~~~~~-~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 438 (582)
.+++.|..-+-+ +-+.|+. ..|..=+-.+.+..+++.+..--++++++.|+.......|+........+++|...+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 344555554433 3556655 33444555566677788888888888888887777777788888888888888887777
Q ss_pred HHh
Q 007998 439 MKN 441 (582)
Q Consensus 439 m~~ 441 (582)
..+
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 643
No 351
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=68.89 E-value=92 Score=28.31 Aligned_cols=160 Identities=13% Similarity=0.030 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC-CCCchhHHHHHH
Q 007998 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER-LDMNVVVCNAVI 252 (582)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li 252 (582)
...||-+.--+...|+++.|.+.|+...+.+ +....+...-.-++--.|++..|.+-+...-+.. -+|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4678888888888899999999998888775 3444444444444555678888876665554433 233233333222
Q ss_pred HHHHhcCCHHHHHHHH-hcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHc
Q 007998 253 DMYAKCGLLDKAFEVF-DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-------DVSYLAALCACNH 324 (582)
Q Consensus 253 ~~y~~~g~~~~A~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~a~~~ 324 (582)
. ..-++.+|..-+ ++.. ..|..-|..-|-.|.--.-.++ .+|+++... -.-+ ..||--+..-+..
T Consensus 177 E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISEE--TLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred H---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccHH--HHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhc
Confidence 2 233455665433 4444 5566666665555433222222 233443331 1111 1356666677777
Q ss_pred CCCHHHHHHHHHHHhHcC
Q 007998 325 AGLVDDGVRLFNSMANCG 342 (582)
Q Consensus 325 ~g~~~~a~~~~~~~~~~~ 342 (582)
.|++++|..+|+..+..+
T Consensus 250 ~G~~~~A~~LfKLaiann 267 (297)
T COG4785 250 LGDLDEATALFKLAVANN 267 (297)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 888888888888777643
No 352
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.89 E-value=1.7e+02 Score=31.35 Aligned_cols=274 Identities=14% Similarity=0.096 Sum_probs=143.3
Q ss_pred HHHHHHHHhhcCCC-ChhHHHHHHH----H-HHhCCChhHHHHHHHHHHH-------cCCCCCCHHHHHHHHHHHhccC-
Q 007998 159 IVSAKKVFDEMGVR-DIASWNALIA----G-LAQGNLASEAVDLFKRMKM-------EGVFKPNEVTVLGALAACGHLG- 224 (582)
Q Consensus 159 ~~~A~~~f~~m~~~-~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~~pd~~t~~~ll~a~~~~~- 224 (582)
...|.+.++..... ++..-..+.. + +....+.+.|+..|+...+ .|. +.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~----~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL----PPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC----CccccHHHHHHhcCCC
Confidence 45666666665433 3333222222 2 4455677888888887766 332 224445555555532
Q ss_pred ----CcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhcccCCCCHHHHHHHHHHHH----hCCChhH
Q 007998 225 ----AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK-CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA----VHGDGPR 295 (582)
Q Consensus 225 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~ 295 (582)
+.+.|..++....+.|.+ +....-..+..... ..+...|.++|......-.+.+.-.+...|. ...+.+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 456677777777777633 43333222222222 2356778888876542333333333333332 2346678
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhH-----Hhh--cCCHHHHHH
Q 007998 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL-----LGR--AGRLQEACD 368 (582)
Q Consensus 296 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~--~g~~~~A~~ 368 (582)
|..++++.-+.| .|-..--...+..+.. +.++.+...+..+.+.|.+--...-..+++. ..+ ..+.+.+..
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 888888887776 4443333333344444 6666666666666654432211111111111 111 224556666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc-C--CchHHHHHHHHHHh
Q 007998 369 IVKSVSMGTDMVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY-E--RWDDVGRVRKAMKN 441 (582)
Q Consensus 369 ~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~ 441 (582)
++.+....-+......|-..|.. ..+++.|...+.+..+.+ +.....++.++... | .+..|.++++...+
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 66665434455555555444432 235777777777776666 56666777777542 1 15677777766654
Q ss_pred C
Q 007998 442 R 442 (582)
Q Consensus 442 ~ 442 (582)
.
T Consensus 538 ~ 538 (552)
T KOG1550|consen 538 E 538 (552)
T ss_pred c
Confidence 3
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.87 E-value=53 Score=30.98 Aligned_cols=88 Identities=13% Similarity=0.012 Sum_probs=47.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--
Q 007998 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK-- 257 (582)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-- 257 (582)
=|.+++..++|.+++...-+-.+..- +..+.....-|-.|.+.+.+..+.++-...++..-.-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pE-klPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPE-KLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcc-cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 36677777777777766555443322 222333444444556666666666666655544322233345555555543
Q ss_pred ---cCCHHHHHHHH
Q 007998 258 ---CGLLDKAFEVF 268 (582)
Q Consensus 258 ---~g~~~~A~~~~ 268 (582)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 45666666555
No 354
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.16 E-value=1.1e+02 Score=29.10 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHc-C-CCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHH
Q 007998 293 GPRALELFEQMGR-AGVKPDDVSYLAALCACNH-A-GLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACD 368 (582)
Q Consensus 293 ~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~-~-g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 368 (582)
..+|+.+|+...- ..+--|......++..... . .....-.++.+.+.. ++-.++..+....+..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 1233344444444444333 1 122222233333333 4445566666666677777777777766
Q ss_pred HHHhC-C---CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007998 369 IVKSV-S---MGTDMVLWQTLLGACQLYGDVEMAEIA 401 (582)
Q Consensus 369 ~~~~~-~---~~p~~~~~~~ll~~~~~~g~~~~a~~~ 401 (582)
+++.. + ...|...|..+|..-...|+......+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 66654 1 122666666666666666665544333
No 355
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.56 E-value=16 Score=28.05 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
..+++.++.+|+|...-..++..+...|++++|.+.+-.+.++.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44555666677777777777777777777777777776666543
No 356
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=67.04 E-value=1.5e+02 Score=30.08 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=46.3
Q ss_pred HhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998 351 GSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409 (582)
Q Consensus 351 ~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 409 (582)
..|+.-|...|.+.+|...++++ |+--...++.+++.+.-+.|+-+....+++....-+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45778888999999999999987 444467888999999888888777777777666554
No 357
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=66.91 E-value=66 Score=33.52 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccc
Q 007998 249 NAVIDMYAKCGLLDKAFEVFDNIK 272 (582)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~~~~~~ 272 (582)
..|+.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 357778999999999999999887
No 358
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.73 E-value=1.2e+02 Score=28.75 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=46.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007998 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323 (582)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 323 (582)
++.....+...|.+.|++.+|+..|-.-. .++...+-.++.-....|...++ |...-..++ -|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 57778888899999999999998886665 44444443344333333333322 212222222 355
Q ss_pred cCCCHHHHHHHHHHHhH
Q 007998 324 HAGLVDDGVRLFNSMAN 340 (582)
Q Consensus 324 ~~g~~~~a~~~~~~~~~ 340 (582)
..+++..|...++...+
T Consensus 153 ~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTS 169 (260)
T ss_dssp HTTBHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 57888888877776665
No 359
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.36 E-value=40 Score=30.77 Aligned_cols=64 Identities=16% Similarity=0.036 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCCh-------HHHHHHHHHHHHcC--CC----CchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 380 VLWQTLLGACQLYGDV-------EMAEIASRKLVEMG--SN----NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 380 ~~~~~ll~~~~~~g~~-------~~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
..+--+...|+..|+. ..|.+.|++..+.+ |. .......++.++.+.|+.++|.+.|.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3445555667777764 44555555555543 22 23566688999999999999999999988544
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.06 E-value=17 Score=23.46 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=15.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 007998 114 ALKACARVLALFETLQIHSHVLRHG 138 (582)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~~g 138 (582)
+..+|...|+.+.|+++++.++..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666543
No 361
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.91 E-value=26 Score=31.64 Aligned_cols=63 Identities=17% Similarity=0.118 Sum_probs=49.5
Q ss_pred HhhhhHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998 351 GSVVDLLGRAGRLQEACDIVKS-VSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413 (582)
Q Consensus 351 ~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 413 (582)
+.-+..+.+.+++.+|+...++ ..-+| |...-..|+..++..|++++|..-++-.-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3445677788899999888764 45566 666667788899999999999999999888888653
No 362
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.81 E-value=1.1e+02 Score=30.85 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=35.3
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHH--cCCCHHHHHHHHHHHhH
Q 007998 286 AFAVHGDGPRALELFEQMGRAGVKPDDV--SYLAALCACN--HAGLVDDGVRLFNSMAN 340 (582)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 340 (582)
.+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344677888888888888876 555444 3444444444 35567788888887766
No 363
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.44 E-value=14 Score=21.13 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSN 421 (582)
Q Consensus 393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 421 (582)
|+.+.+..+|++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788888899988888877777766554
No 364
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.39 E-value=59 Score=25.91 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 279 TWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
-|..++..|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888889999999999999988876
No 365
>PRK12798 chemotaxis protein; Reviewed
Probab=64.28 E-value=1.7e+02 Score=29.61 Aligned_cols=179 Identities=17% Similarity=0.171 Sum_probs=102.3
Q ss_pred cCCHHHHHHHHhccc---CCCCHHHHHHHHHHH-HhCCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHcCCCHH
Q 007998 258 CGLLDKAFEVFDNIK---CRKSLVTWNTMVMAF-AVHGDGPRALELFEQMGRAGVKPDD----VSYLAALCACNHAGLVD 329 (582)
Q Consensus 258 ~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 329 (582)
.|+..+|.+.+..+. .++....+-+|+.+- ....++.+|+.+|+...-. .|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 567777777776664 234455566666553 3445677788888776542 3433 23333344556778887
Q ss_pred HHHHHHHHHhH-cCCccChhhHH-hhhhHHh---hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007998 330 DGVRLFNSMAN-CGVKPNMKHYG-SVVDLLG---RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRK 404 (582)
Q Consensus 330 ~a~~~~~~~~~-~~~~~~~~~~~-~li~~~~---~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 404 (582)
++..+-..... +.-.|-...|. .++..+. .....+.-.+++..|.-.--...|-.+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77666555544 33334332222 2222232 2334455556666664333466888888888999999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHh-----cCCchHHHHHHHHH
Q 007998 405 LVEMGSNNCGDFVLLSNLYAA-----YERWDDVGRVRKAM 439 (582)
Q Consensus 405 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m 439 (582)
++.+... ...-...+..|.. ....+++.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9988632 2222333333332 23455555555433
No 366
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.97 E-value=9.1 Score=31.49 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=25.3
Q ss_pred CCCchHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 007998 86 SSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118 (582)
Q Consensus 86 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 118 (582)
.|.-.+|-.+|++|++.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 46677899999999999999886 77777654
No 367
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.83 E-value=5.2 Score=38.49 Aligned_cols=114 Identities=14% Similarity=0.127 Sum_probs=49.0
Q ss_pred cCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHH
Q 007998 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMV-LWQTLLGACQLYGDVEMAEIA 401 (582)
Q Consensus 324 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 401 (582)
..|.++.|++.|...++.+ ++....|.--...+.+.++...|++-+... .+.||.. .|-.=-.+-+..|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3455555555555555422 233334444444455555555555444432 3333321 121112233344555555555
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998 402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439 (582)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 439 (582)
++...+++- ++.+-..|-...-+.+..++-...+++.
T Consensus 205 l~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 205 LALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHH
Confidence 555555543 2222233333334444444444444433
No 368
>PRK10941 hypothetical protein; Provisional
Probab=63.35 E-value=53 Score=31.19 Aligned_cols=65 Identities=9% Similarity=-0.097 Sum_probs=47.9
Q ss_pred hhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998 352 SVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416 (582)
Q Consensus 352 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 416 (582)
.+-.+|.+.++++.|+.+.+.+ .+.| |+.-|..-.-.|.+.|.+..|..-++..++..|+++.+-
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4555677788888888887776 4444 556676666678888888888888888888888776543
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.49 E-value=23 Score=26.17 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=22.3
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHcCCCHHHHHHH
Q 007998 289 VHGDGPRALELFEQMGRAGVKPDD--VSYLAALCACNHAGLVDDGVRL 334 (582)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 334 (582)
...+.++|+..|+...+.-..|.. .++..++.+++..|.+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666555543222221 2455555555555555554443
No 370
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.40 E-value=96 Score=26.22 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC---------CCChhHHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 007998 147 TTLLDVYAKVGEIVSAKKVFDEMG---------VRDIASWNALIAGLAQGNL-ASEAVDLFKRMKMEGVFKPNEVTVLGA 216 (582)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~pd~~t~~~l 216 (582)
|.+++-.+..+++.....+++.+. ..+-.+|++++.+..+..- ---+..+|..|.+.+. ++++.-|..+
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~-~~t~~dy~~l 121 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDI-EFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 444444444444444444444442 2355678888888866655 3456778888888777 8888889999
Q ss_pred HHHHhccC
Q 007998 217 LAACGHLG 224 (582)
Q Consensus 217 l~a~~~~~ 224 (582)
+.+|.+..
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 88886653
No 371
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.32 E-value=1.2e+02 Score=30.97 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=87.0
Q ss_pred cCCCHHHHHH-HHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007998 324 HAGLVDDGVR-LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEI 400 (582)
Q Consensus 324 ~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 400 (582)
..|++-.|-+ ++.-+..+.-.|+.....+ ......|.++.+...+... -+-....+...++......|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4577666654 4444444444555443333 3466789999999988766 122355678889999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEE
Q 007998 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIE 454 (582)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 454 (582)
..+.|+..+-.++.....-+..-...|-++++.-.+++....+ ++....|+.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~ 430 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVN 430 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--Chhccccee
Confidence 9999998776666655544444556688999999998886544 334446663
No 372
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.93 E-value=52 Score=30.40 Aligned_cols=59 Identities=7% Similarity=-0.101 Sum_probs=49.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 385 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
+-..+...|++-++++.-.+++...|.|..+|..-+.+.+..=+.++|..-|....+..
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33455677899999999999999999999999999988888888888888888777654
No 373
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.26 E-value=61 Score=26.64 Aligned_cols=72 Identities=6% Similarity=-0.029 Sum_probs=45.9
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998 364 QEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG--SNNCGDFVLLSNLYAAYERWDDVGRVRKA 438 (582)
Q Consensus 364 ~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 438 (582)
+++...|... ..+.|......-+. |... ...+.++|+.|...+ ...+..|...+..+...|++++|.++++.
T Consensus 50 er~~~~f~~~~~Y~nD~RylkiWi~-ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 50 ERCIRKFKDDERYKNDERYLKIWIK-YADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHTTSGGGTT-HHHHHHHHH-HHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhhhHhhcCCHHHHHHHHH-HHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3344444433 23335444333332 2222 238889999988855 56678899999999999999999999874
No 374
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.83 E-value=1.1e+02 Score=27.53 Aligned_cols=58 Identities=12% Similarity=0.053 Sum_probs=33.4
Q ss_pred hHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 355 DLLGRAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
.++.+.+.++.|.+-..+. .+.|. .....--..+|-+...++.|++-|+++++.+|..
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 3444555555555443332 33342 1122222346667778888888888888888854
No 375
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.71 E-value=83 Score=24.93 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=56.4
Q ss_pred CCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303 (582)
Q Consensus 224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (582)
...++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.... .||...|-+|-. .+.|-.+++...+.++
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~-~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHC-YPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS---GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCC-CccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 457888888888887753 234444455667788999999954444555 889888877643 4678888888888887
Q ss_pred HhcCCCCCHHHHH
Q 007998 304 GRAGVKPDDVSYL 316 (582)
Q Consensus 304 ~~~g~~p~~~t~~ 316 (582)
...| .|....|.
T Consensus 96 a~~g-~~~~q~Fa 107 (116)
T PF09477_consen 96 ASSG-SPELQAFA 107 (116)
T ss_dssp CT-S-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7655 44444443
No 376
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.60 E-value=1.1e+02 Score=32.02 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=46.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHH-hcCCchHHHHHHHHHH-hCCCccCC
Q 007998 387 GACQLYGDVEMAEIASRKLVEMGSN-NCGDFVLLSNLYA-AYERWDDVGRVRKAMK-NRDVKKVP 448 (582)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~-~~~~~~~~ 448 (582)
....+.|-+.-|.+..+-+++++|. ||.....+++.|+ ++.+++--+++++... .+.+...|
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~P 414 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLP 414 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcC
Confidence 4456778888888888888888887 8888888888886 6677888888887774 34444444
No 377
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=60.32 E-value=3.1e+02 Score=31.46 Aligned_cols=259 Identities=16% Similarity=0.010 Sum_probs=141.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH-HHHHHHHhhcCCCChhHHHHHHHH
Q 007998 105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI-VSAKKVFDEMGVRDIASWNALIAG 183 (582)
Q Consensus 105 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m~~~~~~~~~~li~~ 183 (582)
.+|...-...+..+...+..+ +...+..+++ .+|..+-...+..+.+.+.. .....+...+..+|...-.+.+..
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHH
Confidence 456666666777777766543 4444444442 34555555565555554322 112222233334555554555555
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007998 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263 (582)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 263 (582)
+...+..+ .. .+-++.. .+|...-...+.++.+.+..+.. ...--+++..+-...+.++...+..+.
T Consensus 708 L~~~~~~~-~~-~l~~~L~----D~d~~VR~~Av~aL~~~~~~~~l-------~~~l~D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 708 LRALRAGD-AA-LFAAALG----DPDHRVRIEAVRALVSVDDVESV-------AGAATDENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred HHhhccCC-HH-HHHHHhc----CCCHHHHHHHHHHHhcccCcHHH-------HHHhcCCCHHHHHHHHHHHHHhccccc
Confidence 55443221 12 2322322 45655556666666666554321 122235567777777777777776443
Q ss_pred -HHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcC
Q 007998 264 -AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342 (582)
Q Consensus 264 -A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 342 (582)
+...+..+...+|...-.+.+.++...|..+.+...+..+.+ .+|...=...+.++...+.. ++...+..+.+
T Consensus 775 ~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~-- 848 (897)
T PRK13800 775 PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VAVPALVEALT-- 848 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-chHHHHHHHhc--
Confidence 333343432277888888888888888877665555555554 34555555567777776653 45555555554
Q ss_pred CccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007998 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387 (582)
Q Consensus 343 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 387 (582)
.|+...-...+.++++.+....+...+...-..+|..+-.....
T Consensus 849 -D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~ 892 (897)
T PRK13800 849 -DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARR 892 (897)
T ss_pred -CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 56666767777777775434456666655532455544433333
No 378
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.91 E-value=1e+02 Score=29.21 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=49.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhh--
Q 007998 284 VMAFAVHGDGPRALELFEQMGR--AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR-- 359 (582)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 359 (582)
|.+++..+++.+++...-+--+ +.++|...-...+ .|++.+....+.++-..-....-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 5667777777777665444332 2244443333323 467777777777766666652212233346666665543
Q ss_pred ---cCCHHHHHHHHHh
Q 007998 360 ---AGRLQEACDIVKS 372 (582)
Q Consensus 360 ---~g~~~~A~~~~~~ 372 (582)
.|.+++|+++...
T Consensus 168 LlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 168 LLPLGHFSEAEELVVG 183 (309)
T ss_pred HhccccHHHHHHHHhc
Confidence 6888888887743
No 379
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.78 E-value=26 Score=36.46 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=34.1
Q ss_pred hhhHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998 353 VVDLLGRAGRLQEACDIVKSV-SM-GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420 (582)
Q Consensus 353 li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 420 (582)
|...+.+.|...+|-.++.+. .+ ...+.++..+.+++.-..+++.|++.|+++++++|+++..-..|.
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 344444445555555544332 11 123344555555555556666666666666666665555444443
No 380
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.64 E-value=2.1e+02 Score=29.25 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=26.6
Q ss_pred HHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 007998 176 SWNALIAGLAQ---GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219 (582)
Q Consensus 176 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a 219 (582)
.+..+++++.+ .++.+.|+..+..|.+.|. .|....-..+..+
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~-d~~~i~rrl~~~a 274 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGE-DPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 34445555554 4778888888888888886 5554443333333
No 381
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.53 E-value=17 Score=36.74 Aligned_cols=82 Identities=11% Similarity=0.053 Sum_probs=46.9
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 007998 359 RAGRLQEACDIVKSV-SMGTDMVLW-QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVR 436 (582)
Q Consensus 359 ~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 436 (582)
..+.++.|..++.++ ..+||-..| ..=..++.+.+++..|..=+.++++++|.....|+.-+.++.+.+++.+|...+
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 444555555555443 444533322 222245566666666666666666666666666666666666666666666666
Q ss_pred HHHH
Q 007998 437 KAMK 440 (582)
Q Consensus 437 ~~m~ 440 (582)
+...
T Consensus 96 ~~~~ 99 (476)
T KOG0376|consen 96 EKVK 99 (476)
T ss_pred HHhh
Confidence 5443
No 382
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.14 E-value=67 Score=24.35 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHH
Q 007998 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194 (582)
Q Consensus 127 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 194 (582)
+.++++..++.|+- +..-...+-..-...|+.+.|+++++.++ +....|..++.++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44566666666643 22222222222224577778888888777 77777777777777777655443
No 383
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=58.84 E-value=2.7e+02 Score=30.25 Aligned_cols=187 Identities=10% Similarity=0.016 Sum_probs=91.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCch--HHHHHHHHHHH-hcCCHHHHHHHHhhcC----CCCh----
Q 007998 107 DALTCSFALKACARVLALFETLQIHSHVLR-HGFLADA--LLGTTLLDVYA-KVGEIVSAKKVFDEMG----VRDI---- 174 (582)
Q Consensus 107 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~--~~~~~li~~y~-~~g~~~~A~~~f~~m~----~~~~---- 174 (582)
+...|..+|. .|.+.++.+.+ ..++|.. .++-.+...|. ...+++.|+..+++.. +++.
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3445555554 35556666663 3334433 34555666655 6678888888887652 1111
Q ss_pred -hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC----CCHHHHHHH-HHHHhccCCcHHHHHHHHHHHHcC---CCCch
Q 007998 175 -ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK----PNEVTVLGA-LAACGHLGAWKEGDKIHEYIREER---LDMNV 245 (582)
Q Consensus 175 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----pd~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~---~~~~~ 245 (582)
..-..++..+.+.+... |...+++.++.-- . +-...|..+ +..+...++...|.+.++.+.... .+|..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~-~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE-TYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 12234455565555555 7777777655421 1 112222222 222222367777777776665432 23334
Q ss_pred hHHHHHHHHHH--hcCCHHHHHHHHhccc------------CCCCHHHHHHHHHH--HHhCCChhHHHHHHHHHH
Q 007998 246 VVCNAVIDMYA--KCGLLDKAFEVFDNIK------------CRKSLVTWNTMVMA--FAVHGDGPRALELFEQMG 304 (582)
Q Consensus 246 ~~~~~li~~y~--~~g~~~~A~~~~~~~~------------~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~ 304 (582)
.++-.++.+.. +.+..+++.+..+++. ..|-..+|..++.. +...|+++.+...++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444332 3344455555554431 01233445555443 344555556655555543
No 384
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.95 E-value=57 Score=27.46 Aligned_cols=64 Identities=17% Similarity=-0.018 Sum_probs=46.2
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428 (582)
Q Consensus 362 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (582)
.-+.|.++.+-|+ .....-.........|++..|.++.+.++..+|+|...-...+++|...|.
T Consensus 56 p~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 56 PEEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3456777777775 233344455566789999999999999999999998888888888876654
No 385
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.91 E-value=1.7e+02 Score=27.66 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=45.9
Q ss_pred ChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH-HHHHHHH
Q 007998 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV-LLSNLYA 424 (582)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~ 424 (582)
+......+...|.+.|++.+|+..|-.-. .|+...+..++.-....| .|.+...|. ..+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~---------------~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKG---------------YPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHT---------------SS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhc---------------CCcchhHHHHHHHHHHH
Confidence 45666677888888898888887775443 223333222333333233 233334443 3334466
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007998 425 AYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 425 ~~g~~~~a~~~~~~m~~~ 442 (582)
-.|+...|..+++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 788999999988877754
No 386
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.62 E-value=2e+02 Score=28.15 Aligned_cols=81 Identities=9% Similarity=-0.022 Sum_probs=43.6
Q ss_pred CChhHHHHHHHHHHcC---CC---------chHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998 71 PSTNDFNAVLRGLAHS---SK---------PTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG 138 (582)
Q Consensus 71 ~~~~~~~~li~~~~~~---g~---------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 138 (582)
.|+.+|-.++..--.. +. .+.-+.++++.++.++ -+.......|..+.+..+.+...+-++.++...
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3677777777532221 11 2344566666665532 234455556666666666666666666666653
Q ss_pred CCCchHHHHHHHHHH
Q 007998 139 FLADALLGTTLLDVY 153 (582)
Q Consensus 139 ~~~~~~~~~~li~~y 153 (582)
+.+..+|...|+..
T Consensus 96 -~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 96 -PGSPELWREYLDFR 109 (321)
T ss_pred -CCChHHHHHHHHHH
Confidence 22455555555443
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.44 E-value=21 Score=23.03 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=11.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 007998 180 LIAGLAQGNLASEAVDLFKRMKM 202 (582)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~m~~ 202 (582)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
No 388
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.18 E-value=2.5e+02 Score=29.08 Aligned_cols=91 Identities=9% Similarity=0.043 Sum_probs=56.8
Q ss_pred HHhhhhHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 007998 350 YGSVVDLLGRAGRLQEACDIVKSVS-M-GTDMVLWQTLLGACQ--LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425 (582)
Q Consensus 350 ~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (582)
-+.+++-+.+.|-..+|...+..+. . .|+...+..++..-. ..-+...+.+.++.+..--..++..+......-..
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELP 542 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhcc
Confidence 3456677777888888888887762 1 346667776664321 12236667777777766433566777666655556
Q ss_pred cCCchHHHHHHHHHH
Q 007998 426 YERWDDVGRVRKAMK 440 (582)
Q Consensus 426 ~g~~~~a~~~~~~m~ 440 (582)
.|+.+.+-.++.+..
T Consensus 543 ~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 543 LGRPENCGQIYWRAM 557 (568)
T ss_pred CCCcccccHHHHHHH
Confidence 777777666665543
No 389
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.50 E-value=95 Score=23.71 Aligned_cols=62 Identities=19% Similarity=0.096 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHhcCCc-hHHHHHHHHH
Q 007998 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN--NCGDFVLLSNLYAAYERW-DDVGRVRKAM 439 (582)
Q Consensus 378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~-~~a~~~~~~m 439 (582)
|...-..+...+...|+++.|.+.+-++++.+++ +...-..|+.++...|.- .-+.+.+.+|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 6677777888888899999999988888888764 456667788888777774 3455555544
No 390
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=54.40 E-value=57 Score=34.64 Aligned_cols=47 Identities=17% Similarity=0.036 Sum_probs=26.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCCH
Q 007998 282 TMVMAFAVHGDGPRALELFEQMGRA--GVKPDDVSYLAALCACNHAGLV 328 (582)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~ 328 (582)
+|..+|..+|++..+.++++..... |-+.=...|+..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666666777776666666666542 2111223455556666666654
No 391
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.45 E-value=3.8e+02 Score=30.31 Aligned_cols=208 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH---cCCCCCCHHHHHHHHHHHhccCCc--HHHHHHHHHHHHcCCCCchhHHHHH
Q 007998 177 WNALIAGLAQGNLASEAVDLFKRMKM---EGVFKPNEVTVLGALAACGHLGAW--KEGDKIHEYIREERLDMNVVVCNAV 251 (582)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~pd~~t~~~ll~a~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l 251 (582)
|..|+..|...|+.++|++++.+... ... .--...+-.++.-..+.+.. +...++-....+........+++..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d-~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTD-SFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccc-cchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Q ss_pred HHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC----
Q 007998 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL---- 327 (582)
Q Consensus 252 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 327 (582)
-.--+.+-..++....+..-. .+-++..++.+....-.++..-.+.++.-|...-+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~--------------------~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~ 645 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKE--------------------PKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQAS 645 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhC--------------------cchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccC
Q ss_pred -------------HHHHHHHHHHHhHcCCc------cChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007998 328 -------------VDDGVRLFNSMANCGVK------PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA 388 (582)
Q Consensus 328 -------------~~~a~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~ 388 (582)
.+.....++.-..+... |....|....-.++|.|+.++|+.++-..
T Consensus 646 ~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~--------------- 710 (877)
T KOG2063|consen 646 TDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHE--------------- 710 (877)
T ss_pred chhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHH---------------
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423 (582)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (582)
.++++.|........+.++.+...|..++.+|
T Consensus 711 ---L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 711 ---LDDIDAAESYCLPQYESDKTNKEIYLTLLRIY 742 (877)
T ss_pred ---hcchhHHHHHHHHhccCCCcccHHHHHHHHHH
No 392
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=53.30 E-value=1.3e+02 Score=25.04 Aligned_cols=71 Identities=13% Similarity=-0.038 Sum_probs=45.3
Q ss_pred ccChhhHHhhhhHHhhcCCHH---HHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998 344 KPNMKHYGSVVDLLGRAGRLQ---EACDIVKSV-S-MGT--DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414 (582)
Q Consensus 344 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 414 (582)
.++..+--.+..++.+..+.+ +...++++. + -.| +.....-|.-++.+.++++++.+..+.+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 344444445555666655444 344455544 2 223 2333444666889999999999999999999998754
No 393
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.23 E-value=51 Score=29.45 Aligned_cols=37 Identities=22% Similarity=0.089 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998 374 SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410 (582)
Q Consensus 374 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 410 (582)
...|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567888888888888888888888888888888877
No 394
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.56 E-value=52 Score=20.11 Aligned_cols=29 Identities=14% Similarity=-0.090 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCChHHHHHH--HHHHHHcCC
Q 007998 382 WQTLLGACQLYGDVEMAEIA--SRKLVEMGS 410 (582)
Q Consensus 382 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p 410 (582)
|-.+.-.+...|++++|+.+ ++-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44555556667777777777 335555554
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.93 E-value=2.2e+02 Score=27.23 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=21.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCC
Q 007998 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362 (582)
Q Consensus 318 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 362 (582)
..++|..+|.+.+|.++.++....+ +.+...+-.|+..|...|+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhcc
Confidence 3344555555555555555555422 2334444445555555554
No 396
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=51.84 E-value=88 Score=27.52 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 395 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
+++|...|+++.+.+|.| ..|..-+.+. ..|-.++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 677788888888899976 4555444443 3577778777776654
No 397
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=51.50 E-value=1.9e+02 Score=26.38 Aligned_cols=73 Identities=14% Similarity=0.053 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHc--CCccChhhHHhhhh
Q 007998 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANC--GVKPNMKHYGSVVD 355 (582)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~ 355 (582)
+..++.+.+.+...+++...++-.+. +|. ..+-..++..++-.|++++|..-++..-.. ...+....|..+|.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 44456667777777888777766654 343 344555666777788888887777666552 22333455555554
No 398
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=51.45 E-value=1.6e+02 Score=31.56 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 255 (582)
.|..-+.-+...++.. ....+.++..-. -.+.....-++..|.+.|-.+.+..+...+-..-. ...-|..-+..+
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p-~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~ 448 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVP-LDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF 448 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 3444444443333222 444444444432 34455566666777777777777666665433211 122344455556
Q ss_pred HhcCCHHHHHHHHhc
Q 007998 256 AKCGLLDKAFEVFDN 270 (582)
Q Consensus 256 ~~~g~~~~A~~~~~~ 270 (582)
.++|+......+-+.
T Consensus 449 ~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 449 IRAGDYSLVTRIADR 463 (566)
T ss_dssp H--------------
T ss_pred HHCCCHHHHHHHHHH
Confidence 666666655554443
No 399
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.03 E-value=1.3e+02 Score=24.75 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=44.8
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHhcCCchHHHHHHH
Q 007998 364 QEACDIVKSV-SMGTDMV---LWQTLLGACQLYGDVEMAEIASRKLVEMG--SNNCGDFVLLSNLYAAYERWDDVGRVRK 437 (582)
Q Consensus 364 ~~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 437 (582)
+++.+.|... ..+.|+. .|-..+..| +...++|..|.+.+ ..-+..|...+..+...|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444455444 3334544 344444332 33677888888765 4567788899999999999999999886
No 400
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=50.94 E-value=3.1e+02 Score=28.57 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=114.1
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252 (582)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 252 (582)
|....-+++..+.++..++-...+..+|..-| .+...|..++..|... ..++-..+++++++..+. |++....|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 44456678888888888888888999998875 4778888889888887 667778888888888765 666667778
Q ss_pred HHHHhcCCHHHHHHHHhccc---CC--CCH---HHHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHH
Q 007998 253 DMYAKCGLLDKAFEVFDNIK---CR--KSL---VTWNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDDVSYLAALCACN 323 (582)
Q Consensus 253 ~~y~~~g~~~~A~~~~~~~~---~~--~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~ 323 (582)
+.|-+ ++.+.+...|.+.. .+ .+. ..|..++..- ..+.+..+.+..+... .|..--.+.+--+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 87777 88888888887654 11 111 2566555421 3456666666666654 344444455666667788
Q ss_pred cCCCHHHHHHHHHHHhHc
Q 007998 324 HAGLVDDGVRLFNSMANC 341 (582)
Q Consensus 324 ~~g~~~~a~~~~~~~~~~ 341 (582)
...++++|.+++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 888999999999877763
No 401
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.69 E-value=1.2e+02 Score=24.11 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKM 202 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 202 (582)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999998876
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.58 E-value=51 Score=25.36 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=35.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCC----C-----chhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 390 QLYGDVEMAEIASRKLVEMGSN----N-----CGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
.+.|++..|.+.+.+..+.... . ..+...++..+...|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567888887777776654321 1 12345677778889999999999887764
No 403
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.57 E-value=2.6e+02 Score=30.51 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=22.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 386 LGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 386 l~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
+.+-.-.+++.+|.++.+.|.++.|+.
T Consensus 373 ~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 373 FEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hhhhhhccCHHHHHHHHHHHhccCCce
Confidence 445556789999999999999999864
No 404
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.57 E-value=91 Score=25.53 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=35.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417 (582)
Q Consensus 370 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 417 (582)
+-.+.+-|++.+...-+.+|++.+|+..|.++|+-+...-++....|-
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~ 122 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYP 122 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHH
Confidence 334466789999999999999999999999999988765443333343
No 405
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.22 E-value=37 Score=25.12 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=27.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhH---HHHHHHHHhcCCchHHHHH
Q 007998 391 LYGDVEMAEIASRKLVEMGSNNCGDF---VLLSNLYAAYERWDDVGRV 435 (582)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~p~~~~~~---~~l~~~~~~~g~~~~a~~~ 435 (582)
...+.+.|+..++++++..++.+.-| -.|..+|..-|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777665544433 3455666677777666554
No 406
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.85 E-value=2.9e+02 Score=27.86 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccc--C---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc---------CCCCCH
Q 007998 247 VCNAVIDMYAKCGLLDKAFEVFDNIK--C---RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA---------GVKPDD 312 (582)
Q Consensus 247 ~~~~li~~y~~~g~~~~A~~~~~~~~--~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~ 312 (582)
.+.-+.+-|..||+++.|.+.|.+.. + +.-+..|-.+|..-.-.|+|........+.... .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 45567788999999999999998865 1 122335666666666677777777666665542 123333
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhH-c-C----Ccc-ChhhHHhhhhHHhhcCCHHHHHHHHHhCCC----CCCHHH
Q 007998 313 VSYLAALCACNHAGLVDDGVRLFNSMAN-C-G----VKP-NMKHYGSVVDLLGRAGRLQEACDIVKSVSM----GTDMVL 381 (582)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~-~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~~~~ 381 (582)
..+..+...+. +.++.|.+.|-.... . . +.| |..+|. .+.+++--++-+--..+.....+ +-++..
T Consensus 232 ~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 232 KCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 44444443333 366666666554443 1 1 112 333343 23333333333333333333221 123445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 007998 382 WQTLLGACQLYGDVEMAEIASRKLV 406 (582)
Q Consensus 382 ~~~ll~~~~~~g~~~~a~~~~~~~~ 406 (582)
+..+..-|. +++..-.++++++.
T Consensus 309 r~il~~fy~--sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 309 REILFKFYS--SKYASCLELLREIK 331 (466)
T ss_pred HHHHHHHhh--hhHHHHHHHHHHhc
Confidence 555544443 34666666665543
No 407
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=49.83 E-value=1.6e+02 Score=24.92 Aligned_cols=77 Identities=9% Similarity=0.192 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccc--------CCCCHHHHHHHHHHHHhCCC-hhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007998 249 NAVIDMYAKCGLLDKAFEVFDNIK--------CRKSLVTWNTMVMAFAVHGD-GPRALELFEQMGRAGVKPDDVSYLAAL 319 (582)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~~~~~~--------~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll 319 (582)
|.++.-....+++.....+++.+. ...+..+|.+++.+.++..- ---+..+|+-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444554444444432 12344556666666644443 233455666666655666666666666
Q ss_pred HHHHcC
Q 007998 320 CACNHA 325 (582)
Q Consensus 320 ~a~~~~ 325 (582)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 666543
No 408
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=49.42 E-value=32 Score=32.74 Aligned_cols=48 Identities=8% Similarity=0.045 Sum_probs=32.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 007998 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK 437 (582)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 437 (582)
.+.|+.++|..+|+.++.+.|.++.....++.......+.-+|.+++-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 456677777777777777777777766666666666566666665554
No 409
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.23 E-value=3.9e+02 Score=29.24 Aligned_cols=93 Identities=6% Similarity=-0.246 Sum_probs=54.0
Q ss_pred hHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCchhHHHHHHHHHhcCCchH
Q 007998 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG---SNNCGDFVLLSNLYAAYERWDD 431 (582)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~ 431 (582)
..+...|+..+|...+..+-...+......+.......|..+.+.....+....+ -.-|..|......+++.-..+.
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~ 494 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQ 494 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCH
Confidence 4456678888887777665223455556666666678888888887776543321 0123456666666666556666
Q ss_pred HHHHHHHHHhCCCccC
Q 007998 432 VGRVRKAMKNRDVKKV 447 (582)
Q Consensus 432 a~~~~~~m~~~~~~~~ 447 (582)
+.-.--...+.+..+.
T Consensus 495 ~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 495 SYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 5533222335555443
No 410
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=48.88 E-value=3.5e+02 Score=28.64 Aligned_cols=363 Identities=10% Similarity=-0.051 Sum_probs=188.2
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHH-cCCCchHH
Q 007998 18 SHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLA-HSSKPTNA 92 (582)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~-~~g~~~~A 92 (582)
++..++.+...++. .- |.+.+-|-.....=.+ |..+.+.++|++-. +.++..|...+.-+. ..|+++..
T Consensus 60 ~~~~~r~~y~~fL~----ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~l 133 (577)
T KOG1258|consen 60 DVDALREVYDIFLS----KY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETL 133 (577)
T ss_pred HHHHHHHHHHHHHh----hC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHH
Confidence 35556666665542 23 4554434444444445 88888888888753 356667777766544 45777777
Q ss_pred HHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-----cCCHHHHHHH
Q 007998 93 VLWYRQMLRG-SHRS-DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK-----VGEIVSAKKV 165 (582)
Q Consensus 93 ~~~~~~m~~~-g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-----~g~~~~A~~~ 165 (582)
.+.|+..... |..- ....|...|.--...++.....++++.+++.-...=...+.......-. ....+++.++
T Consensus 134 r~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 134 RDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred HHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 7777777653 3221 2234555555556667777777777777654211000001111000000 0111111111
Q ss_pred -----------------------HhhcCCCC---hhHHH-------HHHHHHHhCCChhHHHHHHHHHHHcC---C---C
Q 007998 166 -----------------------FDEMGVRD---IASWN-------ALIAGLAQGNLASEAVDLFKRMKMEG---V---F 206 (582)
Q Consensus 166 -----------------------f~~m~~~~---~~~~~-------~li~~~~~~g~~~~A~~~~~~m~~~g---~---~ 206 (582)
.+....+. ...-+ ..-..|..+-...+....|+.-.... + -
T Consensus 214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~ 293 (577)
T KOG1258|consen 214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLD 293 (577)
T ss_pred hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCccc
Confidence 11111110 00111 11112222223333333333333221 1 1
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-----CCCCHHHHH
Q 007998 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-----CRKSLVTWN 281 (582)
Q Consensus 207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 281 (582)
+++..+|..-+.--...|+.+.+.-.++...-.- ..-...|--.+.-....|+.+-|..++..-. ..|......
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 2334577777777778888888888887765321 1123344444444555588888887776443 123333333
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHcCCCHHHHHH---HHHHHhHcCCccChhhHHhhhhH-
Q 007998 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS-YLAALCACNHAGLVDDGVR---LFNSMANCGVKPNMKHYGSVVDL- 356 (582)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~---~~~~~~~~~~~~~~~~~~~li~~- 356 (582)
+.+ .-..|+++.|..+++...+. . |+..- -..-+..-.+.|+.+.+.. ++..... | .-+......+.--
T Consensus 373 a~f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~ 446 (577)
T KOG1258|consen 373 ARF--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKF 446 (577)
T ss_pred HHH--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHH
Confidence 322 23468999999999999886 3 66532 2222334456777777763 3332222 1 1222222222221
Q ss_pred ----HhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 007998 357 ----LGRAGRLQEACDIVKSV-SM-GTDMVLWQTLLGACQLYG 393 (582)
Q Consensus 357 ----~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g 393 (582)
+.-.++.+.|..++.++ +. .++...|..++..+..++
T Consensus 447 ~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 447 ARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 33468889999999888 33 447888888888877665
No 411
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=48.53 E-value=1.3e+02 Score=27.08 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH-HHHHHHHhcCCchHHHHHHHHHHh
Q 007998 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV-LLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
.....++..|...||++.|.++|.-+++..+-|....- .=+.++.+.+.-....+.++.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 35567778888888888888888888877655544333 333445555555444466666643
No 412
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=48.25 E-value=4.4e+02 Score=29.53 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=47.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCCH----H---HHHHHHH-HHhccCCcHHHHHHHHHHHHc----CCCCchhHHHHH
Q 007998 184 LAQGNLASEAVDLFKRMKMEGVFKPNE----V---TVLGALA-ACGHLGAWKEGDKIHEYIREE----RLDMNVVVCNAV 251 (582)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~pd~----~---t~~~ll~-a~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 251 (582)
.....++.+|..+..+....-. .|+. . .+..+-. .....|+++.+.++-+..... -..+....+..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456777788777777654321 2221 1 2222211 223456777777776665543 223345566666
Q ss_pred HHHHHhcCCHHHHHHHHhcc
Q 007998 252 IDMYAKCGLLDKAFEVFDNI 271 (582)
Q Consensus 252 i~~y~~~g~~~~A~~~~~~~ 271 (582)
..+..-.|++++|..+....
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 504 GEAAHIRGELTQALALMQQA 523 (894)
T ss_pred hHHHHHhchHHHHHHHHHHH
Confidence 66777777777777666543
No 413
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.50 E-value=1.4e+02 Score=31.47 Aligned_cols=133 Identities=19% Similarity=0.133 Sum_probs=88.3
Q ss_pred CCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHhHcCCccChhhHHhh--hhHHhh-cCCHHHHHHHHHhC-CCCC--CH
Q 007998 308 VKPDDVSYLAALCACNHAG--LVDDGVRLFNSMANCGVKPNMKHYGSV--VDLLGR-AGRLQEACDIVKSV-SMGT--DM 379 (582)
Q Consensus 308 ~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~-~g~~~~A~~~~~~~-~~~p--~~ 379 (582)
-.|+..|...++.-....- .-+-|-.++..|.. |+...|.+| ...|-| .|+...|...+... ...| ..
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~ 642 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD 642 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc
Confidence 4567766665554433222 23345555555543 333333322 334444 68888888877655 3334 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
+....|.....+.|-...|-.++.+.+.+.-..|-++..++++|....+.+.|.+.|+...++..
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 34455666667777788899999999998877888999999999999999999999988776543
No 414
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.36 E-value=1.4e+02 Score=24.58 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 007998 91 NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150 (582)
Q Consensus 91 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 150 (582)
+..+-++.+...++.|++......+++|.+.+|+..|..+++-+...- .+...+|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 344555566667788999999999999999999999999998776442 22233455443
No 415
>PHA02875 ankyrin repeat protein; Provisional
Probab=47.05 E-value=2.1e+02 Score=29.09 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=35.9
Q ss_pred HHHHHHhCCCCCChhH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchH--HHHHHHHHHHhcCCHHHHHHHHhhc
Q 007998 95 WYRQMLRGSHRSDALT--CSFALKACARVLALFETLQIHSHVLRHGFLADAL--LGTTLLDVYAKVGEIVSAKKVFDEM 169 (582)
Q Consensus 95 ~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~m 169 (582)
+++.+.+.|..|+... -.+.+..++..|+.+ +.+.+++.|..|+.. .....+...++.|+.+.+..+++.-
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 3444455666665432 234445555666665 334455556544322 1122344555667777666666543
No 416
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.85 E-value=60 Score=28.98 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=15.4
Q ss_pred ccChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998 344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 344 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 373 (582)
.|+...|..++..+...|+.++|.+..+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555555555555554444
No 417
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.61 E-value=2.2e+02 Score=25.54 Aligned_cols=87 Identities=17% Similarity=0.031 Sum_probs=48.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCch----HHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH--HHHHHHHHHhCCC
Q 007998 116 KACARVLALFETLQIHSHVLRHGFLADA----LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS--WNALIAGLAQGNL 189 (582)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~ 189 (582)
..+...++++.|..-+...+... .|. .+--.|.......|..++|.+.++....++-.+ ...-...+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t--~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQT--KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccc--hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 44556677777777666665431 121 112234455566677777777766665553222 2222345666677
Q ss_pred hhHHHHHHHHHHHcC
Q 007998 190 ASEAVDLFKRMKMEG 204 (582)
Q Consensus 190 ~~~A~~~~~~m~~~g 204 (582)
-++|..-|.+.++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777666666553
No 418
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.30 E-value=80 Score=23.93 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHH
Q 007998 22 IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNA 92 (582)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 92 (582)
...+....+..|+-.+ ... +.+-..-.. |+.+.|+++++.++ +....|..+++++-..|.-.-|
T Consensus 21 ~~~v~d~ll~~~ilT~--~d~----e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTE--EDR----NRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCH--HHH----HHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4566677777776554 222 233333234 78888888888888 7777888888888777765444
No 419
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.21 E-value=40 Score=30.79 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=41.6
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 356 LLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
+....++.+.|.+++.+. ..-| ....|--+...--+.|+++.|.+.+++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345667777777777765 3334 56777777777778888888888888888887765
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.60 E-value=83 Score=24.15 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=20.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998 384 TLLGACQLYGDVEMAEIASRKLVEMG 409 (582)
Q Consensus 384 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 409 (582)
.+.......|++++|...+++++++-
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34556678899999999999988754
No 421
>PF15469 Sec5: Exocyst complex component Sec5
Probab=44.62 E-value=2.2e+02 Score=25.05 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=42.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhH-cCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007998 317 AALCACNHAGLVDDGVRLFNSMAN-CGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD 394 (582)
Q Consensus 317 ~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 394 (582)
.-|.-|.+.|+++.+...|.++.. .+-.. ....+.. -+.++..+.+++. ...|..|...- ..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---------v~~eve~ii~~~r----~~l~~~L~~~~---~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---------VWSEVEKIIEEFR----EKLWEKLLSPP---SS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHHH----HHHHHHHhCCC---CC
Confidence 455667777888888887777766 22111 2222211 1222333322221 11222222211 45
Q ss_pred hHHHHHHHHHHHHcCCCCchhHH
Q 007998 395 VEMAEIASRKLVEMGSNNCGDFV 417 (582)
Q Consensus 395 ~~~a~~~~~~~~~~~p~~~~~~~ 417 (582)
.+...++.+.+++++|++..++.
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHH
Confidence 67777778888888875434443
No 422
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=44.05 E-value=47 Score=30.35 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=51.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
....++.+.+.+++.+++++-|.....+..++....+.|+++.|.+.+++..+.+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 356789999999999999999999999999999999999999999999988775543
No 423
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=44.05 E-value=3.7e+02 Score=27.47 Aligned_cols=121 Identities=10% Similarity=0.005 Sum_probs=58.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007998 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322 (582)
Q Consensus 243 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 322 (582)
++..+-..-+.++...+..+..-.+-.... .+|...-..-+.+....|. ++|......... .|+......+....
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~-d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~l 233 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLR-DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLL 233 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHc-CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHH
Confidence 445555555555555555433333332333 5566655566666666666 555555554322 22222222222222
Q ss_pred HcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCC
Q 007998 323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374 (582)
Q Consensus 323 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 374 (582)
...|. +++...+..+.+. +. +-...+.++++.|+...+.-+++.|.
T Consensus 234 al~~~-~~a~~~L~~ll~d---~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 234 AVAGG-PDAQAWLRELLQA---AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HhCCc-hhHHHHHHHHhcC---hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 22222 2444444444431 22 34455666777777666666666664
No 424
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.58 E-value=37 Score=37.23 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=60.2
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHH
Q 007998 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369 (582)
Q Consensus 290 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 369 (582)
+.++++.+.+.+...--| .++|..+.+.|-.+-|+.+.+.=. + -......+|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~---------t---RF~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDER---------T---RFELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcc---------h---heeeehhcCCHHHHHHH
Confidence 455666665554432211 123444455666666655433211 1 12334578888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007998 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408 (582)
Q Consensus 370 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 408 (582)
-+++. |..+|..|......+|+.+.|+..|++....
T Consensus 666 akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 666 AKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred HHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 88775 6778999998888889998888888876554
No 425
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=42.80 E-value=2.5e+02 Score=25.25 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHh
Q 007998 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMA 339 (582)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 339 (582)
...+.++..+...|+++.|-+.|.-+.+.. ..|.. .|..=+..+.+.+.-....++++.|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 346677788888888888888888887742 33433 23333334444443333334444443
No 426
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.33 E-value=3.3e+02 Score=26.41 Aligned_cols=80 Identities=13% Similarity=-0.029 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 007998 226 WKEGDKIHEYIREERL----DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301 (582)
Q Consensus 226 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (582)
.+.+.+.+......+. ..+......+.....+.|..+.-..+++.....++......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 3444555555544311 223444444444455555544444444443323344445555555555555555555555
Q ss_pred HHHh
Q 007998 302 QMGR 305 (582)
Q Consensus 302 ~m~~ 305 (582)
....
T Consensus 226 ~~l~ 229 (324)
T PF11838_consen 226 LLLS 229 (324)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 5554
No 427
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.06 E-value=1.3e+02 Score=26.53 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=21.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 385 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
.+..|.+.|.+++|.+++++..+ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 34567788888888888888877 6655433
No 428
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.81 E-value=50 Score=31.58 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG 215 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ 215 (582)
-||..|....+.|++++|+.++++..+.|. .--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~-~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGS-TSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-chHHHHHHH
Confidence 467889999999999999999999999887 444444443
No 429
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.41 E-value=31 Score=28.50 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=24.6
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007998 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322 (582)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 322 (582)
.-|.-.+|..+|++|++.|-+||. |+.|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667899999999999999985 55666544
No 430
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.34 E-value=2.6e+02 Score=24.95 Aligned_cols=58 Identities=5% Similarity=0.194 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhHcCCc--------------cChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998 316 LAALCACNHAGLVDDGVRLFNSMANCGVK--------------PNMKHYGSVVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 316 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 373 (582)
.+++..|.+..++.+++++++.|.+..+. +.-...|.-...+.+.|.+|.|..++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 45566778888899999999888774332 22234555666777888888888877754
No 431
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.34 E-value=2.9e+02 Score=25.57 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHH
Q 007998 150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229 (582)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a 229 (582)
+..|.+.-++.-|...++++.+| +.+--++++ |.+..+.+---++.+-...+++ +-+...+..++-..
T Consensus 137 MEiyS~ttRFalaCN~s~KIiEP-IQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv-~yt~dgLeaiifta--------- 204 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIEP-IQSRCAILR-YSKLSDQQILKRLLEVAKAEKV-NYTDDGLEAIIFTA--------- 204 (333)
T ss_pred HHHHcccchhhhhhcchhhhhhh-HHhhhHhhh-hcccCHHHHHHHHHHHHHHhCC-CCCcchHHHhhhhc---------
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCC
Q 007998 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK 309 (582)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 309 (582)
+-|..-.-.-+++....-.+-.+..+|.-.. .|.+.....|+..+. .+++++|.+++.++-+.|..
T Consensus 205 ------------~GDMRQalNnLQst~~g~g~Vn~enVfKv~d-~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgys 270 (333)
T KOG0991|consen 205 ------------QGDMRQALNNLQSTVNGFGLVNQENVFKVCD-EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYS 270 (333)
T ss_pred ------------cchHHHHHHHHHHHhccccccchhhhhhccC-CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCC
Q ss_pred CCHHHHHHH
Q 007998 310 PDDVSYLAA 318 (582)
Q Consensus 310 p~~~t~~~l 318 (582)
|....-+.+
T Consensus 271 p~Dii~~~F 279 (333)
T KOG0991|consen 271 PEDIITTLF 279 (333)
T ss_pred HHHHHHHHH
No 432
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.52 E-value=3.6e+02 Score=26.30 Aligned_cols=113 Identities=13% Similarity=0.037 Sum_probs=53.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHh
Q 007998 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDV---SYLAALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLG 358 (582)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 358 (582)
+..+-.+.|+..+|.+.|+++.+. .|-.. .-..++.+|....-+.....++-+.-+-..+.. ...|++ ++
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTa---AL- 354 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTA---AL- 354 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHH---HH-
Confidence 344445667888888888777654 23111 223456666665555555444443333111111 122221 11
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414 (582)
Q Consensus 359 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 414 (582)
-++..+-++. .||..+-..|-.+ -..|.+...++.+.+|.-|.
T Consensus 355 -----LK~RAVa~kF--spd~asrRGLS~A------E~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 355 -----LKTRAVSEKF--SPETASRRGLSTA------EINAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred -----HHHHHHHhhc--CchhhhhccccHH------HHHHHHHHHHHhhcCCCCcH
Confidence 1222222322 3554443333222 23466777788888886543
No 433
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.07 E-value=2.6e+02 Score=25.63 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=9.2
Q ss_pred hhcCCHHHHHHHHHh
Q 007998 358 GRAGRLQEACDIVKS 372 (582)
Q Consensus 358 ~~~g~~~~A~~~~~~ 372 (582)
.|.|..++|+++.+.
T Consensus 114 iR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 114 IREGKTEEALEFAQT 128 (228)
T ss_pred HHhhhHHHHHHHHHH
Confidence 455666666666654
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=39.91 E-value=4e+02 Score=26.66 Aligned_cols=89 Identities=13% Similarity=0.010 Sum_probs=51.2
Q ss_pred HHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHh-hcCCHHHHHHHHHhCCC---------CCCHHHHHHHHHHH
Q 007998 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG-RAGRLQEACDIVKSVSM---------GTDMVLWQTLLGAC 389 (582)
Q Consensus 320 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~---------~p~~~~~~~ll~~~ 389 (582)
..+.+.|-+..|.++.+-+...+..-|......+|+.|+ ++++++--.++.+.... -|+ ..|...+ ++
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aL-A~ 188 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIAL-AY 188 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHH-HH
Confidence 355667777777777777766443334444555566654 56666666666665421 122 2233333 33
Q ss_pred HhcCCh---------------HHHHHHHHHHHHcCC
Q 007998 390 QLYGDV---------------EMAEIASRKLVEMGS 410 (582)
Q Consensus 390 ~~~g~~---------------~~a~~~~~~~~~~~p 410 (582)
...++. +.|...+.+++..-|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 334444 788888888888876
No 435
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.69 E-value=1.7e+02 Score=24.77 Aligned_cols=45 Identities=20% Similarity=0.074 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 007998 77 NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121 (582)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 121 (582)
..++..+.+.+++-.|.++++++.+.++..+..|.-..|+.+...
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 344444444444455555555555544444444444444444333
No 436
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=39.44 E-value=13 Score=26.27 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=16.4
Q ss_pred ceEEEecCCccccccCCccCC
Q 007998 558 REIIVRDRVRFHRFKDGACSC 578 (582)
Q Consensus 558 ~~~~~~~~~~~h~f~~g~csc 578 (582)
..|=+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 356688999999999998654
No 437
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=38.66 E-value=78 Score=32.13 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=28.3
Q ss_pred CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 374 SMGTD--MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 374 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
.+.|. ..++++-+..+.+++|+..|..+.+++++++|..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 44552 4566777888899999999999999999999854
No 438
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.66 E-value=4.2e+02 Score=29.70 Aligned_cols=133 Identities=12% Similarity=0.118 Sum_probs=90.2
Q ss_pred HHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 007998 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332 (582)
Q Consensus 253 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 332 (582)
.....||+++.|.+.-.++. |...|..|+..-...|+.+-|+..|++... |..|--.|.-.|+.++-.
T Consensus 651 ~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 34567899999998887776 677899999999999999999999988664 223333456678888777
Q ss_pred HHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409 (582)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 409 (582)
++-+.+.. ..|... ....-.-.|+.++=.++++..+..|- .|- ....+|.-+.|+++.++.-...
T Consensus 719 Km~~iae~---r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 719 KMMKIAEI---RNDATG---QFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHHHh---hhhhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcccc
Confidence 66655543 222211 11112235788888889988865432 221 1245788889999988877643
No 439
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.12 E-value=4.4e+02 Score=26.61 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=35.8
Q ss_pred HHHcCCCchHHHHHHHHHHhCCCCCChh--HHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 007998 82 GLAHSSKPTNAVLWYRQMLRGSHRSDAL--TCSFALKACA--RVLALFETLQIHSHVLRH 137 (582)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 137 (582)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344778888999999888876 555444 3444444443 345677788777776654
No 440
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.82 E-value=66 Score=30.79 Aligned_cols=45 Identities=18% Similarity=0.389 Sum_probs=33.4
Q ss_pred CCHHH-HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007998 275 KSLVT-WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319 (582)
Q Consensus 275 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 319 (582)
||..+ |+..|..-.+.||+++|+.++++..+.|+.--..||...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 45544 5688888888999999999999988888765555665443
No 441
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.66 E-value=1.3e+02 Score=22.72 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHH
Q 007998 22 IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNA 92 (582)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 92 (582)
...|..+++..|+-.. ... . ..-+. .+.+.|.++++.+|.+...+|.++..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vlt~--~~~-----e--~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVFTP--DMI-----E--EIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCCCH--HHH-----H--HHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3457778887776554 222 1 22234 6788899999999999999999999998887765443
No 442
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.52 E-value=1.7e+02 Score=25.48 Aligned_cols=45 Identities=16% Similarity=0.003 Sum_probs=21.6
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 007998 78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122 (582)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 122 (582)
+++..+....+.-.|.++++.+.+.++.++..|.-..|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 444444444444455555555555554444444444444444443
No 443
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.99 E-value=1.9e+02 Score=27.13 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=12.1
Q ss_pred HHHHHHhCCChhHHHHHHHHH
Q 007998 180 LIAGLAQGNLASEAVDLFKRM 200 (582)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~m 200 (582)
|..-|.+.|++++|+++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 445555666666666666555
No 444
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.87 E-value=1.1e+02 Score=23.49 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCC
Q 007998 22 IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAVLRGLAHSSK 88 (582)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 88 (582)
...|...+++.|+-.+ ... -...+. .+.+.+.++++.+|.+...+|..+..++-..+.
T Consensus 22 ~~~v~~~L~~~gvlt~--~~~-------~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDILTD--SMA-------ESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCCCH--HHH-------HHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 3457777777776654 222 122334 677889999999999899999999988866554
No 445
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.54 E-value=4.2e+02 Score=25.66 Aligned_cols=82 Identities=17% Similarity=-0.021 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhHc-CC---ccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007998 328 VDDGVRLFNSMANC-GV---KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASR 403 (582)
Q Consensus 328 ~~~a~~~~~~~~~~-~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 403 (582)
.+.+.+.|+..... .- ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56778888888773 21 335555566667777777766655555555445578888889999988889999999999
Q ss_pred HHHHcC
Q 007998 404 KLVEMG 409 (582)
Q Consensus 404 ~~~~~~ 409 (582)
.++.-+
T Consensus 226 ~~l~~~ 231 (324)
T PF11838_consen 226 LLLSND 231 (324)
T ss_dssp HHHCTS
T ss_pred HHcCCc
Confidence 988843
No 446
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.20 E-value=3.6e+02 Score=24.82 Aligned_cols=96 Identities=21% Similarity=0.116 Sum_probs=46.4
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHH
Q 007998 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368 (582)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 368 (582)
.++++++|++.+-+- .+.|+... .++.++...|+.+.|..+++.+.... .+......++.. ..++.+.||..
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHH
Confidence 445566666555221 12222221 35555555667776666666543211 111222222222 45567777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc
Q 007998 369 IVKSVSMGTDMVLWQTLLGACQLY 392 (582)
Q Consensus 369 ~~~~~~~~p~~~~~~~ll~~~~~~ 392 (582)
+.+..+..-....|..++..|...
T Consensus 162 ~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 162 FQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHhCchhhhHHHHHHHHHHHHHH
Confidence 666654222244666666665543
No 447
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.71 E-value=4e+02 Score=25.18 Aligned_cols=217 Identities=14% Similarity=0.188 Sum_probs=104.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHH---cCCC-CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHH----cC-CCCchhHHH
Q 007998 179 ALIAGLAQGNLASEAVDLFKRMKM---EGVF-KPNEVTVLGALAACGHLGAWKEGDKIHEYIRE----ER-LDMNVVVCN 249 (582)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~m~~---~g~~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~ 249 (582)
-+|..+.+.|++++.++.|.+|+. ..+. .-+..+.++++.-.+...+.+.-..+++.-++ .. -..-..+-+
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 345555566666666666555532 1110 12334455555555545554444444443221 11 011112223
Q ss_pred HHHHHHHhcCCHHHHHHHHhccc--CC-----C-------CHHHHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCCHHH
Q 007998 250 AVIDMYAKCGLLDKAFEVFDNIK--CR-----K-------SLVTWNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDDVS 314 (582)
Q Consensus 250 ~li~~y~~~g~~~~A~~~~~~~~--~~-----~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t 314 (582)
-|...|...|.+..-.+++.++. ++ . -...|..=|..|....+-.+-..+|++... ...-|....
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 45666666677666666666553 11 0 123566667777777777677777776543 223344333
Q ss_pred HHHHHHHHH-----cCCCHHHHHH-HHHHHhHcCC--ccCh---hhHHhhhhHHhhcCCHHHHHHHHHh--C-CC--CCC
Q 007998 315 YLAALCACN-----HAGLVDDGVR-LFNSMANCGV--KPNM---KHYGSVVDLLGRAGRLQEACDIVKS--V-SM--GTD 378 (582)
Q Consensus 315 ~~~ll~a~~-----~~g~~~~a~~-~~~~~~~~~~--~~~~---~~~~~li~~~~~~g~~~~A~~~~~~--~-~~--~p~ 378 (582)
..+++-|. +.|.+++|.. +|+....++- .|.. .-|..|..++.+.|- .-|+. . |. .|.
T Consensus 230 -mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPE 303 (440)
T KOG1464|consen 230 -MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPE 303 (440)
T ss_pred -HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHH
Confidence 34455553 4677776654 4444433321 2222 224445555555441 11111 1 33 345
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHH
Q 007998 379 MVLWQTLLGACQLYGDVEMAEIAS 402 (582)
Q Consensus 379 ~~~~~~ll~~~~~~g~~~~a~~~~ 402 (582)
......|+.+|..+ +..+-++++
T Consensus 304 IlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 304 ILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred HHHHHHHHHHHhcc-cHHHHHHHH
Confidence 56667788887654 444433333
No 448
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.66 E-value=4.5e+02 Score=25.72 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccc-------CCCCHHHHHHHH-HHHHhCCChhHHHHHHHHHHhcCCCCCH----
Q 007998 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK-------CRKSLVTWNTMV-MAFAVHGDGPRALELFEQMGRAGVKPDD---- 312 (582)
Q Consensus 245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~---- 312 (582)
....-.....|++.|+.+.|.+.+.+.- .+-|++.+..-+ -.|..+.-..+-++..+.+.+.|-..+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 3455566778888999888888887542 234555444322 3344444456666666777777765544
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998 313 VSYLAALCACNHAGLVDDGVRLFNSMAN 340 (582)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 340 (582)
.+|-.+- |....++.+|-.+|-....
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 3454442 4455677777777766654
No 449
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.50 E-value=4.2e+02 Score=25.35 Aligned_cols=160 Identities=13% Similarity=0.051 Sum_probs=85.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHcCCCHHHHHHHHHHHhH----cCCccChhhHH
Q 007998 283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDV-------SYLAALCACNHAGLVDDGVRLFNSMAN----CGVKPNMKHYG 351 (582)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 351 (582)
+..-..+.+++++|+..+.+....|+..|.. |...+...|...|+...-.+......+ ..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3444566788899999999988888776653 455666777777776554444333322 11112233444
Q ss_pred hhhhHHhh-cCCHHHHHHHHHhC---CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHH----HcC--CCCchhH
Q 007998 352 SVVDLLGR-AGRLQEACDIVKSV---SMGTD-----MVLWQTLLGACQLYGDVEMAEIASRKLV----EMG--SNNCGDF 416 (582)
Q Consensus 352 ~li~~~~~-~g~~~~A~~~~~~~---~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~--p~~~~~~ 416 (582)
.|++.+-. ...++...++.... ..+.. ...=.-++..+.+.|.+.+|+....-++ +.+ |.-...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 45554432 23344444433322 00000 1111335566777777777776554433 332 3344556
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 417 VLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 417 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
..=+.+|....+...+..-+...+..
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 66666676666666666655544443
No 450
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.41 E-value=5e+02 Score=26.16 Aligned_cols=28 Identities=14% Similarity=-0.174 Sum_probs=17.3
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCH
Q 007998 285 MAFAVHGDGPRALELFEQMGRAGVKPDD 312 (582)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 312 (582)
..+.+.+++..|.++|+++....+.|+.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhh
Confidence 3455667777777777777765444443
No 451
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.24 E-value=1.4e+02 Score=19.63 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=16.9
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 007998 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL 217 (582)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll 217 (582)
.+.|-..++..++++|.+.|+ ..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~-~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGF-RISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCc-ccCHHHHHHHH
Confidence 344555555555555555555 55554444443
No 452
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.47 E-value=83 Score=22.02 Aligned_cols=19 Identities=37% Similarity=0.307 Sum_probs=7.2
Q ss_pred HHHHHhCCChhHHHHHHHH
Q 007998 181 IAGLAQGNLASEAVDLFKR 199 (582)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~ 199 (582)
|.+|.+.|++++|.+..++
T Consensus 30 I~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3334444444444443333
No 453
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.43 E-value=1.2e+02 Score=29.55 Aligned_cols=84 Identities=11% Similarity=0.107 Sum_probs=59.2
Q ss_pred hHHhhcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998 355 DLLGRAGRLQEACDIVKSV----SMGT--DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428 (582)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (582)
.-|.+..++..|...|.+- .-.| +.+.|+.-..+-...||+..++.-..+++..+|.+...|..=+.++....+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 4466677777777777543 1123 456666666666777888888888888888999888888887777777777
Q ss_pred chHHHHHHHH
Q 007998 429 WDDVGRVRKA 438 (582)
Q Consensus 429 ~~~a~~~~~~ 438 (582)
+++|....+.
T Consensus 169 ~~~a~nw~ee 178 (390)
T KOG0551|consen 169 FAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHhh
Confidence 6666655443
No 454
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.25 E-value=1.4e+02 Score=20.98 Aligned_cols=34 Identities=3% Similarity=-0.079 Sum_probs=18.6
Q ss_pred cCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 007998 85 HSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC 118 (582)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 118 (582)
..|++=+|-++++.+-.....|....+..+|+..
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A 44 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLA 44 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHH
Confidence 4566777777777765543333445555555544
No 455
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.20 E-value=2.7e+02 Score=22.80 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHH
Q 007998 192 EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234 (582)
Q Consensus 192 ~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~ 234 (582)
.+.++|..|...|+..--+..|..-...+...|++++|.+++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665533334445555555555555555555554
No 456
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.86 E-value=2.3e+02 Score=27.48 Aligned_cols=146 Identities=13% Similarity=0.076 Sum_probs=70.5
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 007998 78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157 (582)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 157 (582)
.++...-+..++.+-++.-...++- .|.-.+-..++ +=-...-+.+|+.++.++++.+- .+|+. -+.+...|
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeI--N~eCA~AyvLL-AEEEa~Ti~~AE~l~k~ALka~e----~~yr~-sqq~qh~~ 260 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEI--NNECATAYVLL-AEEEATTIVDAERLFKQALKAGE----TIYRQ-SQQCQHQS 260 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhc--CchhhhHHHhh-hhhhhhhHHHHHHHHHHHHHHHH----HHHhh-HHHHhhhc
Confidence 4455555566666656555555553 23222211111 11233346677888888777641 11220 01111222
Q ss_pred CHHHHHHHHhhcCCC--ChhHHH--HHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH---HHHHHHHHHhccCCcHHHH
Q 007998 158 EIVSAKKVFDEMGVR--DIASWN--ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV---TVLGALAACGHLGAWKEGD 230 (582)
Q Consensus 158 ~~~~A~~~f~~m~~~--~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~---t~~~ll~a~~~~~~~~~a~ 230 (582)
...+ .+..+ ++.+|- -+.-+..+.|+..+|.+.|+.+.+. .|-.. ....++.+|.....+....
T Consensus 261 ~~~d------a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke---~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 261 PQHE------AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE---FPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred cchh------hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22233 333332 2333344667788888888777655 23221 2345667777766666666
Q ss_pred HHHHHHHHcC
Q 007998 231 KIHEYIREER 240 (582)
Q Consensus 231 ~~~~~~~~~~ 240 (582)
.++.+.-+..
T Consensus 332 avLakYDdis 341 (556)
T KOG3807|consen 332 AVLAKYDDIS 341 (556)
T ss_pred HHHHhhcccc
Confidence 6665554443
No 457
>PHA02875 ankyrin repeat protein; Provisional
Probab=32.80 E-value=5.4e+02 Score=26.07 Aligned_cols=13 Identities=31% Similarity=0.225 Sum_probs=7.8
Q ss_pred CCHHHHHHHHhcC
Q 007998 56 NELAYAHALFRQI 68 (582)
Q Consensus 56 g~~~~A~~~f~~~ 68 (582)
|+.+-+..+++.-
T Consensus 13 g~~~iv~~Ll~~g 25 (413)
T PHA02875 13 GELDIARRLLDIG 25 (413)
T ss_pred CCHHHHHHHHHCC
Confidence 6666666666543
No 458
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.74 E-value=5.9e+02 Score=26.49 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=97.6
Q ss_pred HHHHhCCChhHHHHHHHHHHhcC-CCCC--H-----HHHHHHHH-HHHcCCCHHHHHHHHHHHhH--cCCccChhhHHhh
Q 007998 285 MAFAVHGDGPRALELFEQMGRAG-VKPD--D-----VSYLAALC-ACNHAGLVDDGVRLFNSMAN--CGVKPNMKHYGSV 353 (582)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~-----~t~~~ll~-a~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l 353 (582)
.+-.-.|++.+|++-..+|.+.- -.|. . .....++. -|...+.++.|+.-|....+ .....-...-..+
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 33455799999999999998732 2333 1 11223333 34567889999998888776 2222222333445
Q ss_pred hhHHhhcCCHHHHHHHHHhCCCCCCHHHHH------H--HHHH--HHhcCChHHHHHHHHHHHHcCC-C-----CchhHH
Q 007998 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQ------T--LLGA--CQLYGDVEMAEIASRKLVEMGS-N-----NCGDFV 417 (582)
Q Consensus 354 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~------~--ll~~--~~~~g~~~~a~~~~~~~~~~~p-~-----~~~~~~ 417 (582)
.-.|.+.|+-+.-.++++.++ .|+..++. + ++.+ ....+++.+|...+++.++... . ..-..+
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 667999999888888888884 12222211 1 1122 2467899999999999888641 1 233556
Q ss_pred HHHHHHHhcCCchHHHHHHH
Q 007998 418 LLSNLYAAYERWDDVGRVRK 437 (582)
Q Consensus 418 ~l~~~~~~~g~~~~a~~~~~ 437 (582)
.|+......|+..++.....
T Consensus 490 LLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHhcchHHHHhccc
Confidence 78888888999888876544
No 459
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=32.56 E-value=2.2e+02 Score=21.56 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 007998 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM 169 (582)
Q Consensus 129 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 169 (582)
++|+.....|+..|+.+|..+++...-+=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56666666676667777776666665555555555665555
No 460
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.90 E-value=1.2e+02 Score=21.18 Aligned_cols=22 Identities=5% Similarity=0.188 Sum_probs=9.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHh
Q 007998 318 ALCACNHAGLVDDGVRLFNSMA 339 (582)
Q Consensus 318 ll~a~~~~g~~~~a~~~~~~~~ 339 (582)
++.++...|++++|.++.+.+.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444444444444433
No 461
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=31.72 E-value=1.7e+02 Score=27.65 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=48.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 384 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
.+=.++.+.++++.|....++.+.++|.++.-..--+-+|.+.|...-|..-++...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 33456778889999999999999999998877888888899999999888888765544
No 462
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=31.16 E-value=1.6e+02 Score=27.19 Aligned_cols=20 Identities=5% Similarity=0.137 Sum_probs=13.4
Q ss_pred cCChHHHHHHHHHHHHcCCC
Q 007998 392 YGDVEMAEIASRKLVEMGSN 411 (582)
Q Consensus 392 ~g~~~~a~~~~~~~~~~~p~ 411 (582)
.++.+.|...++++.+++|.
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDK 210 (230)
T ss_pred cccHHHHHHHHHHHHHhCCC
Confidence 34566777777777777763
No 463
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=31.13 E-value=2.8e+02 Score=22.83 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=31.6
Q ss_pred hhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHH
Q 007998 348 KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQ-TLLGACQLYGDVEMAEIASRK 404 (582)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~ 404 (582)
.+..++..++.-.|..++|.+++...+--++-...| .++..|....+.++..++-++
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344455666666777777777776664333333332 355666666655555544443
No 464
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.78 E-value=2.2e+02 Score=21.46 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHH
Q 007998 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193 (582)
Q Consensus 129 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 193 (582)
.+++.+.+.|+-. ....-..-+...+.+.|.++++.++.+...+|.++..++...|...-|
T Consensus 20 ~v~~~L~~~~Vlt----~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFT----PDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCC----HHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4556666665321 112222333455677888888888888888888888887777655443
No 465
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=30.01 E-value=5.1e+02 Score=24.90 Aligned_cols=111 Identities=12% Similarity=0.175 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHhc-cC-CcHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007998 190 ASEAVDLFKRMKM-EGVFKPNEVTVLGALAACGH-LG-AWKEGDKIHEYIRE-ERLDMNVVVCNAVIDMYAKCGLLDKAF 265 (582)
Q Consensus 190 ~~~A~~~~~~m~~-~g~~~pd~~t~~~ll~a~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~ 265 (582)
..+|+.+|+.... ..+ --|......+++.... .+ ....-.++.+.+.. .+-.++..+...+++.+++.+++..-.
T Consensus 144 Vv~aL~L~~~~~~~~~I-i~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESI-IFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHhhccCcccce-eeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 4455555553221 122 3444555555544433 11 22222233333332 233556666666777777777777777
Q ss_pred HHHhccc----CCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 007998 266 EVFDNIK----CRKSLVTWNTMVMAFAVHGDGPRALELFE 301 (582)
Q Consensus 266 ~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (582)
++++... ...|...|..+|..-..+|+..-...+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 7766443 13466677777777777777654444433
No 466
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.86 E-value=4.5e+02 Score=26.63 Aligned_cols=61 Identities=25% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007998 211 VTVLGALAACGHLGAWKEGDKIHEYIREE--RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271 (582)
Q Consensus 211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 271 (582)
.++..+++...-+|+.....++.+.+.+. |-.|...+-.-+.-+|.-.|++.+|.++|-.+
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677755555555555432 33333222234566777777888888877654
No 467
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=29.37 E-value=94 Score=29.85 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=20.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFV 417 (582)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 417 (582)
+..+++++.+..+|.+.++++|++|..+.
T Consensus 152 ~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 152 LFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34566777777777777777777766554
No 468
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.29 E-value=3e+02 Score=23.25 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=14.7
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 007998 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG 259 (582)
Q Consensus 223 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 259 (582)
.+..-.|..+++.+.+.+...+..+...-++.+...|
T Consensus 33 ~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 33 ADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3333444444444444443333333223334444443
No 469
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.11 E-value=5e+02 Score=24.57 Aligned_cols=186 Identities=13% Similarity=0.151 Sum_probs=121.0
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHhccCCcHHHHHHHHHHHH---cCC--CCchhHHHHHHHHHHh
Q 007998 186 QGNLASEAVDLFKRMKMEGVFKPN---EVTVLGALAACGHLGAWKEGDKIHEYIRE---ERL--DMNVVVCNAVIDMYAK 257 (582)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~li~~y~~ 257 (582)
+..++++|+.-|.+.++... ... ...+-.++....+++++++....+.+++. ..+ .-+....|++++.-+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEg-EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEG-EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred cccCHHHHHHHHHHHHhccc-ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 44578999999999876532 222 34566778889999999999988888753 211 1234567788887777
Q ss_pred cCCHHHHHHHHhcc----cCCCCHHHH----HHHHHHHHhCCChhHHHHHHHHHHhcCC----CCCH-------HHHHHH
Q 007998 258 CGLLDKAFEVFDNI----KCRKSLVTW----NTMVMAFAVHGDGPRALELFEQMGRAGV----KPDD-------VSYLAA 318 (582)
Q Consensus 258 ~g~~~~A~~~~~~~----~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~-------~t~~~l 318 (582)
..+.+--..+|+.- ...++...| +.|...|...+++.+-.++++++...-- .-|. ..|..=
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 77776666666532 222343333 4577888888899888889888876411 1111 245566
Q ss_pred HHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHH----hhhhHHhhcCCHHHHH-HHHHh
Q 007998 319 LCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYG----SVVDLLGRAGRLQEAC-DIVKS 372 (582)
Q Consensus 319 l~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~----~li~~~~~~g~~~~A~-~~~~~ 372 (582)
+..|....+-..-..++++... ..--|.+.... |=..+..+.|++++|- ++|+.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 6777778888888888888776 44445544332 2234556788888875 34443
No 470
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=29.09 E-value=6.1e+02 Score=25.53 Aligned_cols=98 Identities=19% Similarity=0.197 Sum_probs=70.7
Q ss_pred hhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHH------------HHHHHHhcCChHHHHHHHHHHHHcCCCC-------
Q 007998 352 SVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT------------LLGACQLYGDVEMAEIASRKLVEMGSNN------- 412 (582)
Q Consensus 352 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~------------ll~~~~~~g~~~~a~~~~~~~~~~~p~~------- 412 (582)
.|...+-.+|++++|.+++.+.+++ ||.+ -++.|...+|+-.|.-+-+++...--++
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 4666777899999999999988643 3332 2366888899999988888876643222
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEE
Q 007998 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453 (582)
Q Consensus 413 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 453 (582)
...|..+.....+.+.+-++-+.++..-+.|-.+...--|+
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~ 252 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWI 252 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhh
Confidence 24677888888888999999999998877665554333354
No 471
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.86 E-value=3.7e+02 Score=25.11 Aligned_cols=54 Identities=22% Similarity=0.179 Sum_probs=30.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHh----cC-CCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 007998 282 TMVMAFAVHGDGPRALELFEQMGR----AG-VKPDDVSYLAALCACNHAGLVDDGVRLF 335 (582)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 335 (582)
.|..-|...|++++|.++|+.+.. .| ..+...+...++.+..+.|+.+....+-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 355667777777777777777632 22 1223334455555566666666555443
No 472
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=28.42 E-value=8.6e+02 Score=27.10 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=27.1
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 007998 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326 (582)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 326 (582)
+.++++.|+..+.+|.+.|..|....-..++.+....|
T Consensus 270 rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 46788999999999999888887655554544444444
No 473
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.34 E-value=3.4e+02 Score=29.23 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=48.3
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHH------HHHHHHhcccCCCCHHHHHHHHHH
Q 007998 215 GALAACGHLGAWKEGDKIHEYIREER--LDMNVVVCNAVIDMYAKCGLLD------KAFEVFDNIKCRKSLVTWNTMVMA 286 (582)
Q Consensus 215 ~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~------~A~~~~~~~~~~~~~~~~~~li~~ 286 (582)
+++.+|...|++-.+.++++.....+ -+.-...+|..++-..+.|.++ .|.+.+++....-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 77888888888888888888777542 2223556777777777777643 445555544445666677666655
Q ss_pred HH
Q 007998 287 FA 288 (582)
Q Consensus 287 ~~ 288 (582)
-.
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 43
No 474
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.32 E-value=4.7e+02 Score=24.05 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007998 258 CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337 (582)
Q Consensus 258 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 337 (582)
.+++++|.+.+-.-...|+-. .-++.++...|+.+.|+.+++.+.-....+ .....++.+ ...+.+.+|..+-+.
T Consensus 91 ~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred hHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 345555555553322111111 125555555666666666666543221111 112222222 334566666655544
Q ss_pred Hh
Q 007998 338 MA 339 (582)
Q Consensus 338 ~~ 339 (582)
..
T Consensus 166 ~~ 167 (226)
T PF13934_consen 166 YP 167 (226)
T ss_pred Cc
Confidence 43
No 475
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=28.22 E-value=65 Score=23.86 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=18.8
Q ss_pred cchHHHHHHHHHHHHHHHHcCcccCCcc
Q 007998 470 VKWREIYEKLDEIMFKIKEYGYAAGTSC 497 (582)
Q Consensus 470 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~ 497 (582)
+...++.+.+++...+++..|+.||-.-
T Consensus 5 ~~li~il~~ie~~inELk~dG~ePDivL 32 (85)
T PF08967_consen 5 GDLIRILELIEEKINELKEDGFEPDIVL 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----EEE
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 3456778888888999999999999654
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.12 E-value=1.6e+02 Score=23.52 Aligned_cols=48 Identities=17% Similarity=0.049 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChH
Q 007998 78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125 (582)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 125 (582)
.++..+...+.+-.|-++++.+.+.++.++..|.-..|+.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 345555556666778888888877777777777766677776666543
No 477
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.92 E-value=2.5e+02 Score=24.46 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=32.3
Q ss_pred HhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHH
Q 007998 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ 364 (582)
Q Consensus 304 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 364 (582)
...|++++..-. .++.........-.|.++++.+.+.+...+..|.-.-++.+.+.|-+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344555554332 334444444555567777777776555555444434456666666543
No 478
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.60 E-value=6.6e+02 Score=25.46 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007998 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGV------RDIASWNALIAGLAQGNLASEAVDLFKRMKM 202 (582)
Q Consensus 144 ~~~~~li~~y~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 202 (582)
..+.-+.+-|..||+++.|.+.+.+... .-+..|-.+|..-.-.|+|........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4566788889999999999999988532 1234577777777777888877777766654
No 479
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=27.04 E-value=3.1e+02 Score=28.60 Aligned_cols=88 Identities=11% Similarity=0.168 Sum_probs=57.8
Q ss_pred hhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------CchhHHH
Q 007998 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN--------NCGDFVL 418 (582)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~~ 418 (582)
+..|-..+.-|+..+++++|.++.+..+ +...|.+|......+.+..-++..|..+.+.+.- -+..-..
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~ 649 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQ 649 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHH
Confidence 3445666777888899999999888765 5678888888878888877777777666554310 0111223
Q ss_pred HHHHHHhcCCchHHHHHHH
Q 007998 419 LSNLYAAYERWDDVGRVRK 437 (582)
Q Consensus 419 l~~~~~~~g~~~~a~~~~~ 437 (582)
++....-.|+..+|.-++.
T Consensus 650 mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 650 MAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHhccchhhhHHHH
Confidence 4444445677777776654
No 480
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.96 E-value=5.5e+02 Score=24.92 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340 (582)
Q Consensus 297 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 340 (582)
.++|+.|.+.++.|.-..|..+.-.+++.=.+.....+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 45677777777888777776666666666677777777777775
No 481
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.78 E-value=7e+02 Score=25.49 Aligned_cols=236 Identities=16% Similarity=0.088 Sum_probs=142.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 007998 78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157 (582)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 157 (582)
.-|+++...| ..++..+....... ++...+.....++....+......+.+ .+ -.++..+....+..+.+.+
T Consensus 43 AhLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~-~L---~d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 43 AHVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLA-VL---QAGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHH-Hh---cCCCHHHHHHHHHHHhcCC
Confidence 3477777777 56777777776432 233344444444433322222222222 22 2446667888899999988
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHH
Q 007998 158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237 (582)
Q Consensus 158 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 237 (582)
+......+...+...+...-.+.+.++...+. .+.+.+....+ .+|...-...+.++...+..+..-. +..+.
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~----d~d~~Vra~A~raLG~l~~~~a~~~-L~~al 187 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT----HEDALVRAAALRALGELPRRLSEST-LRLYL 187 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc----CCCHHHHHHHHHHHHhhccccchHH-HHHHH
Confidence 88877777777776776665566666665442 23344444443 4566677777777777776544333 33332
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-ccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007998 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN-IKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL 316 (582)
Q Consensus 238 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 316 (582)
...|..+-..-+.+....|. .+|...... .. .++....-.+...+...| .+++...+..+.+. |+ +-.
T Consensus 188 ---~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~-~~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d---~~--vr~ 256 (410)
T TIGR02270 188 ---RDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV-LEGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA---AA--TRR 256 (410)
T ss_pred ---cCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh-ccCccHHHHHHHHHHhCC-chhHHHHHHHHhcC---hh--hHH
Confidence 24577777777888888888 666666655 33 556555555555554443 34777777777653 22 555
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHh
Q 007998 317 AALCACNHAGLVDDGVRLFNSMA 339 (582)
Q Consensus 317 ~ll~a~~~~g~~~~a~~~~~~~~ 339 (582)
..+.++.+.|+......+.+.|.
T Consensus 257 ~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 257 EALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHHHHcCCcchHHHHHHHhc
Confidence 67778888888877666666554
No 482
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.67 E-value=3.5e+02 Score=27.47 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 147 TTLLDVYAKVGEIVSAKKVFDEMGV-----------RDIASWNALIAGLAQGNLASEAVDLFKRM 200 (582)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 200 (582)
..|+..++-.||+..|.++++.+.- -.+.++.-+.-+|.-.+++.+|++.|...
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666555421 12334444555555555556665555554
No 483
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.51 E-value=5.6e+02 Score=24.32 Aligned_cols=32 Identities=22% Similarity=0.068 Sum_probs=19.1
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 007998 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427 (582)
Q Consensus 393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (582)
.+.++|...|++.-+.+. ......+. .+...|
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 367777777777777765 34444444 444444
No 484
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.51 E-value=7.4e+02 Score=25.65 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=6.5
Q ss_pred HHHHHHHHHhCCC
Q 007998 432 VGRVRKAMKNRDV 444 (582)
Q Consensus 432 a~~~~~~m~~~~~ 444 (582)
..+=.+.|+...+
T Consensus 367 C~~ei~~mk~~~i 379 (480)
T PHA03100 367 CEKEIERMKEIKL 379 (480)
T ss_pred HHHHHHHHHhcEE
Confidence 3444555655444
No 485
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.28 E-value=8e+02 Score=25.98 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=12.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q 007998 179 ALIAGLAQGNLASEAVDLFKRM 200 (582)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~m 200 (582)
.++.-|.+.++.++|+.++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3445556666666666665555
No 486
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.17 E-value=4.8e+02 Score=23.38 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=25.0
Q ss_pred HHhcCCHHHHHHHHhccc-----CCCCHHHHHHHHH-HHHhCCC--hhHHHHHHHHHHh
Q 007998 255 YAKCGLLDKAFEVFDNIK-----CRKSLVTWNTMVM-AFAVHGD--GPRALELFEQMGR 305 (582)
Q Consensus 255 y~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~ 305 (582)
....|++++|..-++++. .+.-...|+.+.. +++.++. +-+|.-++.-...
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 344566776666666553 1122334444443 4555443 4455555554443
No 487
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.85 E-value=1.4e+02 Score=21.20 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=27.4
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 007998 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221 (582)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~ 221 (582)
+....++-++..+++..-.++++..+.+..+.| ..+..+|.--.+.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g--~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG--SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 344556666666666666666777777777666 345555554444443
No 488
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.57 E-value=3.7e+02 Score=28.86 Aligned_cols=83 Identities=11% Similarity=0.034 Sum_probs=52.4
Q ss_pred hcCCHHHHHHHHH-hCCCCC-C------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCch
Q 007998 359 RAGRLQEACDIVK-SVSMGT-D------MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430 (582)
Q Consensus 359 ~~g~~~~A~~~~~-~~~~~p-~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (582)
+..++..+.+.|+ .|.+-| | ....+.|--.|....+++.|.++++++.+.+|.++-.-.....+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 4555666666654 232222 1 2234555555666677777777777777777777766666777777777777
Q ss_pred HHHHHHHHHHh
Q 007998 431 DVGRVRKAMKN 441 (582)
Q Consensus 431 ~a~~~~~~m~~ 441 (582)
+|..+......
T Consensus 446 ~AL~~~~~~~s 456 (872)
T KOG4814|consen 446 EALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHh
Confidence 77777666553
No 489
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.48 E-value=3.4e+02 Score=26.14 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007998 147 TTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM 202 (582)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 202 (582)
-.++..+.+..++....+.+..+. .+..-...+......|++.+|+++..+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345566666666666666666552 234445567777889999999998887754
No 490
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=25.28 E-value=7.1e+02 Score=25.07 Aligned_cols=134 Identities=10% Similarity=0.121 Sum_probs=69.3
Q ss_pred cCChHHHHHHHHHHHH-----cCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHH
Q 007998 121 VLALFETLQIHSHVLR-----HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195 (582)
Q Consensus 121 ~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 195 (582)
.++++.|.+-+-...+ .+...+..+...+++.|...++|+.--+.. ....-+.|+...|+.
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~ 90 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQ 90 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHH
Confidence 4556665554333322 223444556667777777777766533321 122345667766654
Q ss_pred HH--HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccC
Q 007998 196 LF--KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKC 273 (582)
Q Consensus 196 ~~--~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 273 (582)
-. +-|.-..- .||..|-..++..+...- ++ ++|-++. -...-..|...+-.+|++++|..++.+++
T Consensus 91 ~Mvq~~~~y~~~-~~d~~~k~~li~tLr~Vt---eg-kIyvEvE------RarlTk~L~~ike~~Gdi~~Aa~il~el~- 158 (439)
T KOG1498|consen 91 SMVQQAMTYIDG-TPDLETKIKLIETLRTVT---EG-KIYVEVE------RARLTKMLAKIKEEQGDIAEAADILCELQ- 158 (439)
T ss_pred HHHHHHHHhccC-CCCchhHHHHHHHHHHhh---cC-ceEEeeh------HHHHHHHHHHHHHHcCCHHHHHHHHHhcc-
Confidence 32 22222222 566666555555432110 00 0110100 12334567788889999999999998877
Q ss_pred CCCHHHHHHH
Q 007998 274 RKSLVTWNTM 283 (582)
Q Consensus 274 ~~~~~~~~~l 283 (582)
+.||.+|
T Consensus 159 ---VETygsm 165 (439)
T KOG1498|consen 159 ---VETYGSM 165 (439)
T ss_pred ---hhhhhhh
Confidence 4455443
No 491
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=25.23 E-value=3.8e+02 Score=21.91 Aligned_cols=61 Identities=10% Similarity=0.052 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCch----hHHHHHHHHHhcCCchHHHHHHHH
Q 007998 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVE-------MGSNNCG----DFVLLSNLYAAYERWDDVGRVRKA 438 (582)
Q Consensus 378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 438 (582)
|...+..|..++...|++++++...++.+. ++.+.-. +...-+.++...|+.++|.+.|+.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 344555666677777777766665555543 3333222 223445567788999999888874
No 492
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.10 E-value=7.3e+02 Score=25.63 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=25.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 007998 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238 (582)
Q Consensus 189 ~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 238 (582)
..++-+++++.+.+.| .+| ....-+++|.+.+++++|...+++-++
T Consensus 69 ~~~e~i~lL~~l~~~g--~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG--GAD--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred cHHHHHHHHHHHHHcc--CCC--ccceeeecccccccHHHHHHHHHhhhh
Confidence 3556666666666655 334 223345566666666666666655544
No 493
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=24.58 E-value=6.3e+02 Score=24.87 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=15.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHh-----cCCCCCH
Q 007998 283 MVMAFAVHGDGPRALELFEQMGR-----AGVKPDD 312 (582)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~ 312 (582)
+...+...|+..++.+++.+..+ .|++|+.
T Consensus 121 ~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 121 IARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 33444455555555555555444 3455543
No 494
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.39 E-value=3.8e+02 Score=25.78 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=30.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 251 VIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 251 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
++..+.+.+++.+..+.+..+. .+..-...+..+...|++..|+++..+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~---~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK---TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4455555555555555555554 333344456666677777777777776654
No 495
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=24.36 E-value=4.7e+02 Score=25.09 Aligned_cols=94 Identities=6% Similarity=0.118 Sum_probs=53.3
Q ss_pred cChhhHHhhhhHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCC--
Q 007998 345 PNMKHYGSVVDLLGRAGRLQEACDIVKSV-------SMGTDMVLWQTLLG---ACQLYGDVEMAEIASRKLVEMGSNN-- 412 (582)
Q Consensus 345 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~p~~-- 412 (582)
-..+.+..+.+-|++.++.+.+.+..++. +.+-|+. -+.++ .|....-.++-++..+.+.+.+.+-
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~--l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeR 190 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF--LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWER 190 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH--HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHh
Confidence 34566777888899999988888877643 3333432 22222 2333334566677777777776531
Q ss_pred chhHHHHHHHH-HhcCCchHHHHHHHHHH
Q 007998 413 CGDFVLLSNLY-AAYERWDDVGRVRKAMK 440 (582)
Q Consensus 413 ~~~~~~l~~~~-~~~g~~~~a~~~~~~m~ 440 (582)
..-|-..-.+| ....++.+|..++-...
T Consensus 191 rNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 191 RNRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 11222222222 34556777777766544
No 496
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=24.18 E-value=7.9e+02 Score=25.96 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=47.6
Q ss_pred HcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHH
Q 007998 202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD-MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTW 280 (582)
Q Consensus 202 ~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 280 (582)
+.|+ ..+......+... ..|++..+...++++...+-. ....+. +.+.+++ . ..+....
T Consensus 202 ~egi-~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~-------------~~V~~ll---g-~~~~~~i 261 (507)
T PRK06645 202 QENL-KTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISP-------------QVINQML---G-LVDSSVI 261 (507)
T ss_pred HcCC-CCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCH-------------HHHHHHH---C-CCCHHHH
Confidence 4455 5666655555543 346777777766665432110 000111 1111111 1 2233333
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH
Q 007998 281 NTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV 313 (582)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 313 (582)
-.|+.+. ..|+.++|+.+++++...|..|...
T Consensus 262 f~L~~ai-~~~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 262 IEFVEYI-IHRETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 3344433 3588999999999999988877643
No 497
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=24.11 E-value=1.6e+02 Score=21.48 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=23.7
Q ss_pred CHHHHHHHHhcCC---CCChhHHHHHHHHHHcCC
Q 007998 57 ELAYAHALFRQIN---APSTNDFNAVLRGLAHSS 87 (582)
Q Consensus 57 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 87 (582)
+.+.|++++.... ++++..||++...+.++.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 5677888887775 467888999988877654
No 498
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.98 E-value=3.6e+02 Score=23.90 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=18.6
Q ss_pred hhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 007998 354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385 (582)
Q Consensus 354 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 385 (582)
+-.|.+.|.+++|.+++++.--.|+......-
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~k 149 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMK 149 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHH
Confidence 34566777777777777766224544444333
No 499
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=23.44 E-value=65 Score=24.79 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.4
Q ss_pred ccCCCchhhHHHHhhhhCceEEEecCCccccccCCc
Q 007998 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGA 575 (582)
Q Consensus 540 ~~~~~~h~~~~~~s~~~~~~~~~~~~~~~h~f~~g~ 575 (582)
+-|.+--+|.++-.......||-...++ |+|+||.
T Consensus 51 g~~~tR~eAv~~gq~Ll~~gii~HV~~~-h~F~D~~ 85 (93)
T cd04440 51 GDCRTREEAVILGVGLCNNGFMHHVLEK-SEFKDEP 85 (93)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEecCCC-cCcCCcC
Confidence 4455667888888888889998777665 7999984
No 500
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.41 E-value=1.8e+02 Score=17.39 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHH
Q 007998 394 DVEMAEIASRKLVEMGSNNCGDFVL 418 (582)
Q Consensus 394 ~~~~a~~~~~~~~~~~p~~~~~~~~ 418 (582)
.++.|..+|++.+...| ++.++..
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHH
Confidence 45677777777777766 3444443
Done!