Query 007998
Match_columns 582
No_of_seqs 675 out of 4377
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 15:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.3E-38 1.5E-42 338.2 37.9 426 3-443 86-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.9E-37 2.7E-41 328.3 28.8 416 51-483 61-543 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.6E-27 2.9E-31 236.2 42.6 370 51-428 7-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 6.9E-29 2.4E-33 256.9 23.6 178 145-323 28-221 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 4.4E-26 1.5E-30 230.9 42.8 355 79-442 5-368 (388)
6 4g26_A Pentatricopeptide repea 100.0 2.2E-28 7.6E-33 253.2 20.5 199 91-290 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 4E-23 1.4E-27 217.0 35.2 391 47-443 10-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.5E-22 5.1E-27 209.0 36.4 295 71-373 24-355 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 2E-22 6.7E-27 208.1 36.6 339 91-438 10-405 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.5E-22 5E-27 212.7 32.7 391 16-419 19-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.2E-20 4.3E-25 199.2 36.9 386 46-443 28-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 6.1E-20 2.1E-24 193.9 33.3 386 16-417 38-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.3E-18 4.5E-23 173.1 36.8 308 108-443 3-336 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1E-18 3.6E-23 173.8 35.2 315 72-426 2-353 (359)
15 3hym_B Cell division cycle pro 99.8 3.1E-18 1E-22 168.5 29.4 284 142-429 21-321 (330)
16 1b89_A Protein (clathrin heavy 99.8 3E-19 1E-23 176.4 20.8 342 56-436 17-366 (449)
17 3hym_B Cell division cycle pro 99.8 4.6E-17 1.6E-21 160.0 33.0 282 109-395 23-321 (330)
18 1fch_A Peroxisomal targeting s 99.8 9E-18 3.1E-22 168.1 25.6 279 155-437 37-354 (368)
19 2xm6_A Protein corresponding t 99.8 1.5E-15 5.3E-20 158.3 43.1 354 70-444 36-434 (490)
20 2ooe_A Cleavage stimulation fa 99.8 2.8E-16 9.5E-21 165.7 35.0 391 44-442 14-492 (530)
21 2xm6_A Protein corresponding t 99.8 9.3E-16 3.2E-20 160.0 38.5 351 56-425 57-452 (490)
22 4g1t_A Interferon-induced prot 99.8 2.7E-16 9.4E-21 163.1 33.3 369 72-453 50-470 (472)
23 4eqf_A PEX5-related protein; a 99.8 7.4E-18 2.5E-22 168.7 20.6 262 173-438 64-352 (365)
24 1fch_A Peroxisomal targeting s 99.8 6E-17 2E-21 162.1 25.4 285 86-406 38-357 (368)
25 4eqf_A PEX5-related protein; a 99.8 4.3E-17 1.5E-21 163.2 22.1 228 107-340 64-309 (365)
26 3cv0_A Peroxisome targeting si 99.7 1.2E-16 4.3E-21 156.7 23.1 258 176-438 23-311 (327)
27 2ooe_A Cleavage stimulation fa 99.7 5.3E-15 1.8E-19 155.9 36.4 365 71-443 11-455 (530)
28 3mkr_A Coatomer subunit epsilo 99.7 1.8E-15 6.1E-20 146.0 29.5 267 153-434 9-286 (291)
29 1b89_A Protein (clathrin heavy 99.7 7.9E-18 2.7E-22 166.4 12.3 280 120-434 15-303 (449)
30 4g1t_A Interferon-induced prot 99.7 1.9E-15 6.4E-20 156.8 28.6 366 40-420 48-471 (472)
31 3cv0_A Peroxisome targeting si 99.7 2.1E-15 7.2E-20 147.9 26.4 255 113-372 26-311 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 7.7E-16 2.6E-20 148.6 22.7 249 181-444 6-266 (291)
33 1xi4_A Clathrin heavy chain; a 99.7 6.9E-14 2.4E-18 153.6 39.9 368 19-437 964-1340(1630)
34 1xi4_A Clathrin heavy chain; a 99.7 6.5E-14 2.2E-18 153.8 37.3 377 4-434 988-1376(1630)
35 3spa_A Mtrpol, DNA-directed RN 99.7 3E-17 1E-21 174.6 11.0 129 241-369 123-258 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 9.7E-17 3.3E-21 170.8 9.3 152 139-291 123-286 (1134)
37 3uq3_A Heat shock protein STI1 99.6 3.3E-14 1.1E-18 134.1 22.1 220 211-442 6-236 (258)
38 2pl2_A Hypothetical conserved 99.6 3.6E-14 1.2E-18 130.6 20.2 195 242-439 2-211 (217)
39 3uq3_A Heat shock protein STI1 99.6 6.3E-14 2.1E-18 132.2 21.1 234 175-421 6-255 (258)
40 3u4t_A TPR repeat-containing p 99.6 8E-14 2.7E-18 132.9 21.5 249 146-426 6-268 (272)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.1E-14 2.1E-18 133.8 20.6 243 186-436 17-269 (275)
42 2h6f_A Protein farnesyltransfe 99.6 2.2E-13 7.6E-18 135.9 23.7 247 174-425 97-365 (382)
43 2pl2_A Hypothetical conserved 99.6 2.9E-13 9.8E-18 124.5 21.1 195 173-373 4-211 (217)
44 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-12 4.6E-17 122.8 25.4 207 174-416 37-246 (252)
45 1ouv_A Conserved hypothetical 99.5 3E-12 1E-16 122.1 27.5 224 173-443 5-252 (273)
46 2ho1_A Type 4 fimbrial biogene 99.5 8.7E-13 3E-17 124.1 22.7 199 245-444 37-240 (252)
47 1ouv_A Conserved hypothetical 99.5 3.3E-12 1.1E-16 121.9 27.0 226 142-412 5-255 (273)
48 2q7f_A YRRB protein; TPR, prot 99.5 2.9E-13 1E-17 126.4 18.9 173 248-422 60-236 (243)
49 3e4b_A ALGK; tetratricopeptide 99.5 1E-12 3.6E-17 135.0 24.5 299 17-340 17-350 (452)
50 2vq2_A PILW, putative fimbrial 99.5 2.7E-12 9.1E-17 118.1 24.6 201 215-417 13-220 (225)
51 2vq2_A PILW, putative fimbrial 99.5 1.6E-12 5.6E-17 119.6 22.9 200 243-443 6-212 (225)
52 3e4b_A ALGK; tetratricopeptide 99.5 6.2E-13 2.1E-17 136.7 21.1 344 79-444 9-389 (452)
53 2q7f_A YRRB protein; TPR, prot 99.5 5.8E-13 2E-17 124.4 18.8 199 243-443 21-223 (243)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 2E-12 6.8E-17 123.2 22.3 239 86-335 18-269 (275)
55 4a1s_A PINS, partner of inscut 99.5 2.5E-13 8.4E-18 138.0 16.7 262 179-442 53-372 (411)
56 3u4t_A TPR repeat-containing p 99.5 4.6E-12 1.6E-16 120.5 24.4 229 108-341 3-250 (272)
57 3sf4_A G-protein-signaling mod 99.5 9E-13 3.1E-17 133.2 20.5 265 175-441 10-335 (406)
58 3ro2_A PINS homolog, G-protein 99.5 9E-13 3.1E-17 129.2 19.3 264 177-442 8-332 (338)
59 2h6f_A Protein farnesyltransfe 99.5 1.3E-12 4.4E-17 130.4 20.4 229 210-443 97-349 (382)
60 3sf4_A G-protein-signaling mod 99.5 9.8E-13 3.3E-17 133.0 17.5 297 106-430 7-364 (406)
61 3vtx_A MAMA; tetratricopeptide 99.4 9.3E-12 3.2E-16 110.9 20.1 165 276-443 4-171 (184)
62 4abn_A Tetratricopeptide repea 99.4 1.2E-12 4.1E-17 135.4 15.8 211 190-438 84-317 (474)
63 2ond_A Cleavage stimulation fa 99.4 7.4E-11 2.5E-15 114.7 27.5 219 191-413 33-275 (308)
64 4a1s_A PINS, partner of inscut 99.4 5.5E-12 1.9E-16 127.9 18.7 132 279-410 225-374 (411)
65 3vtx_A MAMA; tetratricopeptide 99.4 1.4E-11 4.7E-16 109.8 18.2 168 244-413 4-175 (184)
66 3ulq_A Response regulator aspa 99.4 1.7E-11 5.8E-16 123.2 20.9 229 180-408 109-368 (383)
67 3ulq_A Response regulator aspa 99.4 9.2E-12 3.1E-16 125.2 18.5 225 216-441 109-367 (383)
68 3ro2_A PINS homolog, G-protein 99.4 1.3E-11 4.4E-16 120.8 19.1 97 314-410 225-334 (338)
69 4e6h_A MRNA 3'-END-processing 99.4 7.7E-10 2.6E-14 117.8 32.0 405 40-445 63-573 (679)
70 3nf1_A KLC 1, kinesin light ch 99.4 2.9E-12 9.8E-17 124.4 12.1 165 175-340 28-223 (311)
71 4e6h_A MRNA 3'-END-processing 99.4 3.6E-09 1.2E-13 112.7 36.6 398 3-413 68-575 (679)
72 2ond_A Cleavage stimulation fa 99.3 1.9E-10 6.6E-15 111.7 24.0 162 176-340 101-269 (308)
73 3nf1_A KLC 1, kinesin light ch 99.3 4E-12 1.4E-16 123.4 10.9 233 209-441 26-306 (311)
74 4gyw_A UDP-N-acetylglucosamine 99.3 3.9E-11 1.3E-15 129.3 19.2 163 276-441 8-173 (723)
75 1hz4_A MALT regulatory protein 99.3 2E-09 6.7E-14 107.6 29.6 261 180-441 20-321 (373)
76 3q15_A PSP28, response regulat 99.3 1.5E-10 5.1E-15 116.1 20.1 303 105-407 7-364 (378)
77 4abn_A Tetratricopeptide repea 99.3 9.1E-11 3.1E-15 121.3 18.6 209 158-373 83-318 (474)
78 3as5_A MAMA; tetratricopeptide 99.3 1.9E-10 6.4E-15 101.9 18.1 161 246-442 9-173 (186)
79 3q15_A PSP28, response regulat 99.3 2E-09 6.8E-14 107.8 27.7 300 140-441 7-364 (378)
80 3as5_A MAMA; tetratricopeptide 99.2 5.9E-10 2E-14 98.6 19.6 170 210-414 8-179 (186)
81 4i17_A Hypothetical protein; T 99.2 6.5E-10 2.2E-14 102.6 20.1 206 207-423 4-224 (228)
82 1hz4_A MALT regulatory protein 99.2 6.7E-09 2.3E-13 103.6 27.6 225 78-304 19-280 (373)
83 4i17_A Hypothetical protein; T 99.2 3.2E-10 1.1E-14 104.7 16.3 190 244-443 6-210 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.1 3.4E-09 1.2E-13 114.2 20.7 160 143-305 9-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.1 1.6E-09 5.3E-14 103.1 15.2 221 221-441 12-280 (283)
86 3qky_A Outer membrane assembly 99.0 1.9E-08 6.4E-13 94.9 20.5 205 244-488 14-247 (261)
87 3edt_B KLC 2, kinesin light ch 99.0 1.9E-09 6.4E-14 102.5 13.4 197 109-305 44-280 (283)
88 1qqe_A Vesicular transport pro 99.0 5.9E-09 2E-13 100.3 16.3 193 220-412 47-273 (292)
89 3mv2_B Coatomer subunit epsilo 99.0 3.8E-08 1.3E-12 93.2 20.9 57 249-305 104-164 (310)
90 3qky_A Outer membrane assembly 99.0 1.6E-08 5.4E-13 95.4 17.4 205 207-431 12-250 (261)
91 1qqe_A Vesicular transport pro 99.0 1.8E-08 6.2E-13 96.9 17.8 155 118-272 47-226 (292)
92 2yhc_A BAMD, UPF0169 lipoprote 99.0 5E-08 1.7E-12 89.7 20.0 183 245-446 4-217 (225)
93 2fo7_A Synthetic consensus TPR 99.0 1.5E-08 5E-13 84.1 14.9 129 279-441 3-131 (136)
94 4ga2_A E3 SUMO-protein ligase 99.0 9.7E-10 3.3E-14 94.2 7.4 141 285-428 5-149 (150)
95 2fo7_A Synthetic consensus TPR 98.9 4.7E-08 1.6E-12 80.9 16.4 127 176-305 3-131 (136)
96 3qou_A Protein YBBN; thioredox 98.9 3.3E-08 1.1E-12 94.7 16.9 173 263-440 104-282 (287)
97 3mv2_B Coatomer subunit epsilo 98.9 2.6E-07 8.8E-12 87.6 20.3 194 193-415 85-289 (310)
98 2pzi_A Probable serine/threoni 98.8 1.9E-07 6.4E-12 100.9 22.0 182 185-374 402-603 (681)
99 3urz_A Uncharacterized protein 98.8 9.6E-08 3.3E-12 86.6 16.4 24 180-203 10-33 (208)
100 3rjv_A Putative SEL1 repeat pr 98.8 2E-07 7E-12 84.7 18.5 163 274-444 15-199 (212)
101 3dra_A Protein farnesyltransfe 98.8 4.5E-06 1.5E-10 79.8 28.2 229 185-418 44-298 (306)
102 2ifu_A Gamma-SNAP; membrane fu 98.8 8.6E-08 3E-12 92.8 16.5 218 187-434 4-253 (307)
103 2vsy_A XCC0866; transferase, g 98.8 5.8E-08 2E-12 102.8 15.4 160 258-420 2-169 (568)
104 2r5s_A Uncharacterized protein 98.8 3.7E-08 1.3E-12 86.7 11.6 157 248-440 9-171 (176)
105 2vsy_A XCC0866; transferase, g 98.8 8.5E-08 2.9E-12 101.6 16.4 148 223-373 2-154 (568)
106 2uy1_A Cleavage stimulation fa 98.8 2.2E-05 7.4E-10 81.0 33.8 182 56-239 28-242 (493)
107 2pzi_A Probable serine/threoni 98.8 1.2E-07 4E-12 102.5 17.5 169 119-292 402-583 (681)
108 3gyz_A Chaperone protein IPGC; 98.7 3.9E-08 1.3E-12 83.8 9.8 97 347-443 36-134 (151)
109 2r5s_A Uncharacterized protein 98.7 3.2E-07 1.1E-11 80.6 15.9 155 146-304 9-171 (176)
110 3urz_A Uncharacterized protein 98.7 5.1E-07 1.8E-11 81.7 17.7 137 177-319 57-197 (208)
111 3qou_A Protein YBBN; thioredox 98.7 5.7E-07 2E-11 86.0 18.8 156 144-303 118-281 (287)
112 4gco_A Protein STI-1; structur 98.7 1.1E-07 3.7E-12 78.5 11.7 108 314-422 15-124 (126)
113 2vgx_A Chaperone SYCD; alterna 98.7 5.1E-08 1.7E-12 83.1 9.3 98 346-443 20-119 (148)
114 4ga2_A E3 SUMO-protein ligase 98.7 9.3E-08 3.2E-12 81.6 11.0 108 153-263 7-117 (150)
115 3rjv_A Putative SEL1 repeat pr 98.7 9.7E-07 3.3E-11 80.2 18.4 160 173-342 17-198 (212)
116 3u3w_A Transcriptional activat 98.7 1.1E-06 3.7E-11 84.3 19.4 158 283-440 81-264 (293)
117 3dra_A Protein farnesyltransfe 98.7 2.3E-05 7.9E-10 74.8 28.2 215 85-305 45-286 (306)
118 2ifu_A Gamma-SNAP; membrane fu 98.7 2.5E-07 8.5E-12 89.5 14.7 163 121-305 4-183 (307)
119 2uy1_A Cleavage stimulation fa 98.7 3E-06 1E-10 87.4 23.4 336 58-439 11-380 (493)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.3E-07 1.8E-11 81.7 15.5 123 318-444 12-152 (213)
121 2yhc_A BAMD, UPF0169 lipoprote 98.6 1.8E-06 6.1E-11 79.2 18.7 59 145-203 6-70 (225)
122 2qfc_A PLCR protein; TPR, HTH, 98.6 1.1E-06 3.7E-11 84.4 17.7 162 279-440 77-264 (293)
123 2c2l_A CHIP, carboxy terminus 98.6 1.7E-07 5.9E-12 89.3 11.9 192 244-442 3-199 (281)
124 4gco_A Protein STI-1; structur 98.6 2.2E-07 7.4E-12 76.6 10.5 101 343-443 8-111 (126)
125 1na0_A Designed protein CTPR3; 98.6 1E-06 3.4E-11 71.6 14.0 114 313-427 10-125 (125)
126 1a17_A Serine/threonine protei 98.6 9.9E-07 3.4E-11 76.1 14.2 126 314-440 15-144 (166)
127 2xcb_A PCRH, regulatory protei 98.6 4.2E-07 1.4E-11 76.6 11.3 97 347-443 18-116 (142)
128 3u3w_A Transcriptional activat 98.6 1.3E-05 4.4E-10 76.7 22.7 193 207-408 43-266 (293)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.7E-06 9.3E-11 76.9 17.0 142 146-306 9-150 (213)
130 2vyi_A SGTA protein; chaperone 98.5 1.1E-06 3.7E-11 72.1 13.1 117 313-430 13-131 (131)
131 1p5q_A FKBP52, FK506-binding p 98.5 5.7E-07 1.9E-11 88.1 12.6 94 347-440 196-292 (336)
132 2lni_A Stress-induced-phosphop 98.5 1.1E-06 3.7E-11 72.6 12.5 114 314-428 18-133 (133)
133 4f3v_A ESX-1 secretion system 98.5 4E-06 1.4E-10 78.4 17.2 99 321-421 144-249 (282)
134 2e2e_A Formate-dependent nitri 98.5 4.7E-07 1.6E-11 79.5 9.7 119 325-444 23-146 (177)
135 3q7a_A Farnesyltransferase alp 98.5 0.00011 3.6E-09 71.1 26.8 182 176-362 56-257 (349)
136 2kck_A TPR repeat; tetratricop 98.5 1.7E-06 5.6E-11 68.9 11.9 99 346-444 5-108 (112)
137 3gw4_A Uncharacterized protein 98.5 9.8E-07 3.3E-11 79.1 11.4 82 156-237 5-93 (203)
138 3upv_A Heat shock protein STI1 98.5 8.7E-07 3E-11 72.8 10.1 96 348-443 5-102 (126)
139 2qfc_A PLCR protein; TPR, HTH, 98.5 1E-05 3.5E-10 77.4 19.1 126 176-303 77-222 (293)
140 1a17_A Serine/threonine protei 98.4 6E-06 2.1E-10 71.0 15.5 94 175-271 14-107 (166)
141 4f3v_A ESX-1 secretion system 98.4 3.8E-06 1.3E-10 78.5 14.8 183 257-443 18-238 (282)
142 3gw4_A Uncharacterized protein 98.4 1.5E-06 5E-11 77.9 11.7 150 257-407 4-175 (203)
143 1hxi_A PEX5, peroxisome target 98.4 6.9E-07 2.4E-11 73.0 8.4 94 350-443 20-115 (121)
144 3q7a_A Farnesyltransferase alp 98.4 0.00022 7.6E-09 68.8 26.8 181 76-261 57-258 (349)
145 2e2e_A Formate-dependent nitri 98.4 2.3E-06 7.8E-11 75.0 11.8 127 288-416 21-152 (177)
146 3dss_A Geranylgeranyl transfer 98.4 7.3E-05 2.5E-09 71.9 23.0 192 227-422 91-318 (331)
147 2vgx_A Chaperone SYCD; alterna 98.4 1.4E-06 4.7E-11 74.1 9.9 107 309-416 17-126 (148)
148 3gyz_A Chaperone protein IPGC; 98.4 1.9E-06 6.5E-11 73.3 10.5 94 174-270 36-129 (151)
149 1na0_A Designed protein CTPR3; 98.4 1.2E-05 4.1E-10 65.0 14.9 60 176-237 11-70 (125)
150 3sz7_A HSC70 cochaperone (SGT) 98.4 1.6E-06 5.6E-11 74.9 10.0 95 348-442 12-108 (164)
151 3q49_B STIP1 homology and U bo 98.3 4.2E-06 1.4E-10 69.5 11.7 98 346-443 8-107 (137)
152 1elw_A TPR1-domain of HOP; HOP 98.3 8E-06 2.7E-10 65.4 13.0 107 315-422 7-115 (118)
153 2c2l_A CHIP, carboxy terminus 98.3 1.8E-06 6E-11 82.3 10.4 49 290-340 148-198 (281)
154 2vyi_A SGTA protein; chaperone 98.3 1.2E-05 4E-10 65.7 14.2 92 176-270 14-105 (131)
155 2fbn_A 70 kDa peptidylprolyl i 98.3 3.6E-06 1.2E-10 75.3 11.8 170 253-442 12-186 (198)
156 3upv_A Heat shock protein STI1 98.3 4.3E-06 1.5E-10 68.5 11.2 109 314-423 6-122 (126)
157 2xcb_A PCRH, regulatory protei 98.3 2.7E-06 9.3E-11 71.6 9.9 106 314-420 20-127 (142)
158 1elw_A TPR1-domain of HOP; HOP 98.3 5.4E-06 1.8E-10 66.4 11.3 97 347-443 4-102 (118)
159 2lni_A Stress-induced-phosphop 98.3 1.3E-05 4.3E-10 65.9 13.7 95 174-271 16-110 (133)
160 3sz7_A HSC70 cochaperone (SGT) 98.3 5.6E-06 1.9E-10 71.5 11.9 107 313-420 12-120 (164)
161 4gcn_A Protein STI-1; structur 98.3 2.1E-06 7E-11 70.8 8.2 93 349-441 10-111 (127)
162 2dba_A Smooth muscle cell asso 98.3 7.6E-06 2.6E-10 68.8 11.9 91 350-440 31-126 (148)
163 3dss_A Geranylgeranyl transfer 98.3 0.00016 5.5E-09 69.5 22.1 181 261-443 90-305 (331)
164 2dba_A Smooth muscle cell asso 98.2 1.9E-05 6.5E-10 66.3 13.7 109 314-424 30-144 (148)
165 3q49_B STIP1 homology and U bo 98.2 9.6E-06 3.3E-10 67.3 10.5 99 312-411 9-109 (137)
166 1p5q_A FKBP52, FK506-binding p 98.2 2.1E-05 7.2E-10 76.9 14.3 31 174-204 147-177 (336)
167 2fbn_A 70 kDa peptidylprolyl i 98.2 3.3E-06 1.1E-10 75.6 7.5 118 150-270 11-147 (198)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.1E-05 3.9E-10 82.4 12.3 94 347-440 317-413 (457)
169 3rkv_A Putative peptidylprolyl 98.1 1.4E-05 4.7E-10 68.8 10.8 66 378-443 62-127 (162)
170 1wao_1 Serine/threonine protei 98.1 5.3E-06 1.8E-10 85.3 9.2 116 321-437 15-134 (477)
171 2hr2_A Hypothetical protein; a 98.1 9.9E-06 3.4E-10 68.4 9.0 64 379-442 57-131 (159)
172 3k9i_A BH0479 protein; putativ 98.1 2.8E-06 9.5E-11 68.7 5.4 83 360-442 3-90 (117)
173 1wao_1 Serine/threonine protei 98.1 2.5E-05 8.5E-10 80.3 13.6 118 251-371 12-134 (477)
174 2xev_A YBGF; tetratricopeptide 98.1 8.7E-06 3E-10 66.7 8.4 90 353-442 8-105 (129)
175 1elr_A TPR2A-domain of HOP; HO 98.1 4.6E-05 1.6E-09 62.1 12.4 45 379-424 79-123 (131)
176 1ihg_A Cyclophilin 40; ppiase 98.1 2.2E-05 7.7E-10 77.7 12.2 136 278-434 224-362 (370)
177 2kck_A TPR repeat; tetratricop 98.1 1.7E-05 6E-10 62.7 9.4 95 317-412 11-110 (112)
178 4gcn_A Protein STI-1; structur 98.1 3.5E-05 1.2E-09 63.2 11.1 61 176-238 10-70 (127)
179 4b4t_Q 26S proteasome regulato 98.1 8.7E-05 3E-09 75.1 16.5 161 213-373 58-242 (434)
180 4b4t_Q 26S proteasome regulato 98.0 6.1E-05 2.1E-09 76.3 15.2 161 280-440 58-243 (434)
181 1elr_A TPR2A-domain of HOP; HO 98.0 1.7E-05 5.7E-10 64.9 9.0 95 348-442 5-108 (131)
182 1hxi_A PEX5, peroxisome target 98.0 1.6E-05 5.3E-10 64.7 8.6 96 316-412 21-118 (121)
183 3k9i_A BH0479 protein; putativ 98.0 5E-06 1.7E-10 67.2 5.4 92 325-416 3-98 (117)
184 3ro3_A PINS homolog, G-protein 98.0 3.1E-05 1.1E-09 65.8 10.6 135 279-441 11-157 (164)
185 2xev_A YBGF; tetratricopeptide 98.0 9E-05 3.1E-09 60.5 12.9 101 319-420 9-117 (129)
186 3rkv_A Putative peptidylprolyl 98.0 2E-05 7E-10 67.7 9.0 76 347-422 63-141 (162)
187 1dce_A Protein (RAB geranylger 98.0 0.00048 1.6E-08 72.1 20.4 169 261-431 45-244 (567)
188 3n71_A Histone lysine methyltr 98.0 5.1E-05 1.7E-09 77.6 12.5 125 321-445 318-467 (490)
189 2if4_A ATFKBP42; FKBP-like, al 97.9 2.4E-05 8.1E-10 76.6 9.5 148 278-444 180-330 (338)
190 3ro3_A PINS homolog, G-protein 97.9 4.9E-05 1.7E-09 64.6 10.5 136 245-408 9-158 (164)
191 2if4_A ATFKBP42; FKBP-like, al 97.9 1.1E-05 3.7E-10 79.0 6.4 115 314-444 181-295 (338)
192 2l6j_A TPR repeat-containing p 97.9 2.6E-05 9E-10 61.8 6.6 92 346-437 3-102 (111)
193 2hr2_A Hypothetical protein; a 97.8 3.6E-05 1.2E-09 64.9 7.1 68 349-416 59-139 (159)
194 2kat_A Uncharacterized protein 97.8 6.2E-05 2.1E-09 60.3 8.0 78 365-442 3-82 (115)
195 3ma5_A Tetratricopeptide repea 97.8 0.0001 3.5E-09 57.4 9.0 65 378-442 6-70 (100)
196 1na3_A Designed protein CTPR2; 97.8 0.00012 4E-09 55.5 8.7 81 347-427 9-91 (91)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00027 9.3E-09 72.1 12.8 135 174-332 268-405 (457)
198 1zu2_A Mitochondrial import re 97.7 2.3E-05 7.8E-10 66.0 3.7 88 357-444 12-122 (158)
199 1ihg_A Cyclophilin 40; ppiase 97.6 0.00044 1.5E-08 68.3 12.1 117 146-265 226-361 (370)
200 3bee_A Putative YFRE protein; 97.6 0.00049 1.7E-08 52.6 9.6 69 377-445 4-75 (93)
201 2l6j_A TPR repeat-containing p 97.5 0.0004 1.4E-08 54.7 8.6 68 377-444 2-69 (111)
202 1klx_A Cysteine rich protein B 97.5 0.0022 7.4E-08 53.2 13.3 110 189-307 10-127 (138)
203 3n71_A Histone lysine methyltr 97.5 0.00065 2.2E-08 69.4 11.9 123 286-408 318-464 (490)
204 1klx_A Cysteine rich protein B 97.4 0.002 6.7E-08 53.5 11.9 89 353-443 31-127 (138)
205 3qwp_A SET and MYND domain-con 97.4 0.0007 2.4E-08 68.1 10.4 116 354-487 294-427 (429)
206 1zu2_A Mitochondrial import re 97.2 0.00028 9.7E-09 59.3 4.9 51 363-413 62-125 (158)
207 1dce_A Protein (RAB geranylger 97.2 0.018 6.1E-07 60.2 19.8 170 87-261 43-242 (567)
208 2kat_A Uncharacterized protein 97.2 0.00091 3.1E-08 53.2 7.6 79 331-410 4-84 (115)
209 1na3_A Designed protein CTPR2; 97.2 0.0034 1.2E-07 47.0 10.5 79 175-256 10-88 (91)
210 3qww_A SET and MYND domain-con 97.0 0.0038 1.3E-07 62.6 11.3 90 325-414 311-422 (433)
211 3qwp_A SET and MYND domain-con 96.9 0.0077 2.6E-07 60.5 13.1 99 319-417 294-414 (429)
212 3qww_A SET and MYND domain-con 96.9 0.0012 4.1E-08 66.3 7.0 83 359-441 310-410 (433)
213 3ma5_A Tetratricopeptide repea 96.9 0.0037 1.3E-07 48.3 8.2 64 276-340 6-69 (100)
214 2kc7_A BFR218_protein; tetratr 96.8 0.0059 2E-07 46.7 8.9 64 353-416 6-72 (99)
215 1pc2_A Mitochondria fission pr 96.8 0.003 1E-07 52.4 7.4 104 363-492 14-124 (152)
216 2kc7_A BFR218_protein; tetratr 96.8 0.0031 1.1E-07 48.4 7.0 60 385-444 6-66 (99)
217 3ly7_A Transcriptional activat 96.8 0.034 1.2E-06 53.6 15.1 65 378-443 276-340 (372)
218 3mkq_A Coatomer beta'-subunit; 96.7 0.056 1.9E-06 59.2 18.5 131 214-374 633-763 (814)
219 3mkq_A Coatomer beta'-subunit; 96.6 0.14 4.9E-06 55.9 21.0 155 82-272 608-763 (814)
220 1wy6_A Hypothetical protein ST 96.6 0.22 7.4E-06 39.8 15.8 140 287-445 17-157 (172)
221 3ly7_A Transcriptional activat 96.5 0.08 2.8E-06 51.0 15.5 150 171-350 191-346 (372)
222 3mkq_B Coatomer subunit alpha; 96.2 0.31 1.1E-05 41.4 15.8 129 253-405 13-141 (177)
223 3u64_A Protein TP_0956; tetrat 96.0 0.024 8.3E-07 52.4 8.8 87 363-449 179-276 (301)
224 1pc2_A Mitochondria fission pr 95.9 0.028 9.6E-07 46.6 8.2 88 329-417 15-109 (152)
225 3bee_A Putative YFRE protein; 95.9 0.031 1E-06 42.4 7.9 69 344-412 3-76 (93)
226 2v5f_A Prolyl 4-hydroxylase su 95.9 0.05 1.7E-06 42.2 9.2 69 351-419 9-86 (104)
227 1qsa_A Protein (soluble lytic 95.9 2.1 7.2E-05 44.7 26.4 251 145-407 74-347 (618)
228 1wy6_A Hypothetical protein ST 95.0 0.86 2.9E-05 36.5 13.2 85 155-242 73-157 (172)
229 3u64_A Protein TP_0956; tetrat 94.7 1.9 6.4E-05 39.9 16.8 113 258-373 134-266 (301)
230 3lvg_A Clathrin heavy chain 1; 94.4 3.1E-05 1.1E-09 76.0 -16.3 263 142-434 53-325 (624)
231 3mkq_B Coatomer subunit alpha; 94.2 2.1 7.3E-05 36.2 15.0 123 56-200 19-141 (177)
232 1nzn_A CGI-135 protein, fissio 94.1 0.22 7.6E-06 39.6 8.0 91 324-415 13-110 (126)
233 1nzn_A CGI-135 protein, fissio 94.1 0.49 1.7E-05 37.7 10.0 84 292-377 16-105 (126)
234 1y8m_A FIS1; mitochondria, unk 93.8 2.1 7.3E-05 34.6 13.4 104 363-492 22-130 (144)
235 2v5f_A Prolyl 4-hydroxylase su 93.7 0.28 9.7E-06 37.7 8.1 66 378-443 4-76 (104)
236 4gns_B Protein CSD3, chitin bi 93.6 0.2 7E-06 53.3 9.3 54 387-440 345-398 (754)
237 3lvg_A Clathrin heavy chain 1; 93.4 0.00052 1.8E-08 67.5 -9.8 257 56-337 39-316 (624)
238 4h7y_A Dual specificity protei 91.8 1.4 4.6E-05 36.2 9.6 96 69-166 9-117 (161)
239 4h7y_A Dual specificity protei 91.4 1.3 4.3E-05 36.3 9.0 54 361-415 74-130 (161)
240 4ady_A RPN2, 26S proteasome re 90.0 24 0.00082 38.5 20.0 304 77-388 343-670 (963)
241 2p58_C Putative type III secre 89.9 4.5 0.00016 30.2 9.9 89 121-215 20-108 (116)
242 2uwj_G Type III export protein 89.4 4.2 0.00015 30.3 9.4 88 122-215 20-107 (115)
243 3o48_A Mitochondria fission 1 88.9 4.1 0.00014 32.5 9.9 67 376-442 37-107 (134)
244 2wpv_A GET4, UPF0363 protein Y 88.4 16 0.00056 34.1 18.0 168 246-441 34-216 (312)
245 2ff4_A Probable regulatory pro 87.0 1.8 6E-05 42.5 8.4 68 381-448 173-245 (388)
246 4ady_A RPN2, 26S proteasome re 86.5 41 0.0014 36.7 22.2 119 184-305 500-622 (963)
247 2uwj_G Type III export protein 86.1 8.9 0.00031 28.6 11.0 88 224-317 20-107 (115)
248 2p58_C Putative type III secre 85.7 9.5 0.00032 28.6 11.6 89 223-317 20-108 (116)
249 2wpv_A GET4, UPF0363 protein Y 85.6 23 0.0008 33.1 21.4 168 145-340 35-216 (312)
250 4fhn_B Nucleoporin NUP120; pro 83.9 25 0.00085 39.9 17.0 163 148-329 817-988 (1139)
251 1v54_E Cytochrome C oxidase po 83.6 7 0.00024 29.4 8.0 51 370-420 36-86 (109)
252 3lpz_A GET4 (YOR164C homolog); 83.3 31 0.0011 32.6 21.0 167 247-441 37-215 (336)
253 4gns_B Protein CSD3, chitin bi 82.7 21 0.00072 38.0 14.6 53 374-427 608-660 (754)
254 2ff4_A Probable regulatory pro 82.4 5.7 0.0002 38.8 9.8 58 178-237 175-232 (388)
255 3lpz_A GET4 (YOR164C homolog); 82.3 34 0.0012 32.3 24.0 168 145-340 37-215 (336)
256 3ffl_A Anaphase-promoting comp 81.6 9.2 0.00032 31.9 9.0 22 353-374 128-149 (167)
257 1v54_E Cytochrome C oxidase po 80.8 9.4 0.00032 28.7 7.8 62 292-355 25-87 (109)
258 1y8m_A FIS1; mitochondria, unk 79.8 22 0.00074 28.8 10.4 36 380-415 78-113 (144)
259 3ffl_A Anaphase-promoting comp 79.4 15 0.00052 30.6 9.6 114 146-272 23-149 (167)
260 4b4t_P 26S proteasome regulato 78.6 55 0.0019 32.4 20.8 95 279-373 139-244 (445)
261 4b4t_P 26S proteasome regulato 77.4 59 0.002 32.2 18.8 150 87-236 30-203 (445)
262 3o48_A Mitochondria fission 1 76.3 27 0.00094 27.8 9.9 71 345-415 38-114 (134)
263 3esl_A Checkpoint serine/threo 76.2 37 0.0013 29.2 13.9 103 364-492 61-169 (202)
264 4fhn_B Nucleoporin NUP120; pro 76.0 90 0.0031 35.3 18.2 167 112-297 816-991 (1139)
265 2y69_E Cytochrome C oxidase su 73.5 18 0.00063 28.8 8.0 56 365-420 74-129 (152)
266 2y69_E Cytochrome C oxidase su 71.6 34 0.0012 27.3 9.1 72 293-375 69-141 (152)
267 1zbp_A Hypothetical protein VP 68.8 69 0.0023 29.1 12.4 119 287-413 7-134 (273)
268 3ltj_A Alpharep-4; protein eng 67.1 58 0.002 27.6 20.9 60 243-304 119-178 (201)
269 4a1g_A Mitotic checkpoint seri 66.4 42 0.0014 27.5 9.2 80 364-446 52-134 (152)
270 3ltm_A Alpha-REP4; protein eng 65.4 65 0.0022 27.6 19.9 61 243-305 124-184 (211)
271 2wvi_A Mitotic checkpoint seri 63.2 57 0.0019 27.1 9.6 80 364-446 47-129 (164)
272 4b4t_R RPN7, 26S proteasome re 62.1 51 0.0018 32.4 11.0 57 247-303 133-194 (429)
273 2qx5_A Nucleoporin NIC96; mRNA 61.8 99 0.0034 32.3 13.3 22 357-378 548-569 (661)
274 1zbp_A Hypothetical protein VP 60.8 19 0.00065 32.7 6.7 59 355-413 5-65 (273)
275 3ltm_A Alpha-REP4; protein eng 59.6 82 0.0028 26.8 19.8 161 64-238 24-184 (211)
276 2nsz_A Programmed cell death p 57.7 53 0.0018 26.0 8.3 60 146-205 10-74 (129)
277 4b4t_R RPN7, 26S proteasome re 52.8 1.4E+02 0.0047 29.3 12.3 32 410-443 344-375 (429)
278 1wdy_A 2-5A-dependent ribonucl 52.8 39 0.0013 30.4 8.0 106 56-170 16-129 (285)
279 1qsa_A Protein (soluble lytic 51.9 2.2E+02 0.0076 29.5 31.9 227 189-433 229-470 (618)
280 3mv2_A Coatomer subunit alpha; 51.7 64 0.0022 30.1 8.8 58 371-442 197-256 (325)
281 1wdy_A 2-5A-dependent ribonucl 49.3 56 0.0019 29.2 8.5 19 150-168 43-61 (285)
282 2ion_A PDCD4, programmed cell 48.9 50 0.0017 27.0 7.0 60 146-205 12-76 (152)
283 3esl_A Checkpoint serine/threo 47.1 1.4E+02 0.0047 25.7 10.6 67 176-243 82-148 (202)
284 2l0z_A Glycoprotein G2; zinc-b 46.5 7.3 0.00025 23.3 1.0 17 565-581 12-29 (42)
285 3bqo_A Telomeric repeat-bindin 45.2 1E+02 0.0034 26.4 8.1 62 362-423 93-161 (211)
286 2nsz_A Programmed cell death p 44.3 1.1E+02 0.0039 24.0 8.5 64 248-312 10-78 (129)
287 3ygs_P Procaspase 9; apoptosis 41.8 45 0.0015 24.8 5.1 61 25-92 26-87 (97)
288 2k0q_A Putative uncharacterize 41.3 9.3 0.00032 26.1 1.1 22 558-579 8-29 (74)
289 1n11_A Ankyrin; clathrin, BAND 40.3 1.5E+02 0.0051 28.8 10.5 14 56-69 25-38 (437)
290 4aez_C MAD3, mitotic spindle c 39.7 81 0.0028 27.7 7.1 79 364-445 101-182 (223)
291 1oyz_A Hypothetical protein YI 38.4 2.2E+02 0.0074 25.4 24.6 48 242-290 139-186 (280)
292 2ion_A PDCD4, programmed cell 37.5 1.1E+02 0.0036 25.0 7.2 63 248-311 12-79 (152)
293 1k1a_A B-cell lymphoma 3-encod 36.0 1.5E+02 0.0052 25.5 9.0 12 122-133 20-31 (241)
294 3ltj_A Alpharep-4; protein eng 35.8 1.9E+02 0.0066 24.1 21.2 164 60-237 15-178 (201)
295 2qx5_A Nucleoporin NIC96; mRNA 34.4 3.7E+02 0.013 28.1 12.3 20 256-275 549-568 (661)
296 3eu9_A Huntingtin-interacting 33.4 76 0.0026 27.4 6.4 206 230-445 22-239 (240)
297 3eiq_C Programmed cell death p 33.3 3.2E+02 0.011 25.9 16.4 24 249-272 221-244 (358)
298 2zu6_B Programmed cell death p 33.3 2.9E+02 0.01 25.5 16.0 24 249-272 170-193 (307)
299 3kea_A K1L; tropism, ANK repea 33.1 1.5E+02 0.005 26.9 8.5 13 56-68 42-54 (285)
300 1oyz_A Hypothetical protein YI 33.0 2.6E+02 0.009 24.8 25.0 48 71-122 35-82 (280)
301 2d2s_A Exocyst complex compone 32.4 1.6E+02 0.0055 26.0 8.1 24 78-101 23-46 (235)
302 2pk8_A Uncharacterized protein 31.8 27 0.00092 25.4 2.2 30 469-498 12-41 (103)
303 3txn_A 26S proteasome regulato 31.6 3.6E+02 0.012 26.0 24.4 277 47-342 23-344 (394)
304 2fe3_A Peroxide operon regulat 31.4 1.7E+02 0.0058 23.4 7.6 36 122-157 35-70 (145)
305 3txn_A 26S proteasome regulato 30.4 3.8E+02 0.013 25.8 29.2 214 215-444 104-345 (394)
306 3hra_A Ankyrin repeat family p 30.3 91 0.0031 26.1 6.2 55 48-107 8-66 (201)
307 2xig_A Ferric uptake regulatio 29.6 1.6E+02 0.0056 23.7 7.2 59 99-158 18-76 (150)
308 1mzb_A Ferric uptake regulatio 28.8 1.8E+02 0.0062 22.9 7.2 43 78-120 22-65 (136)
309 4b4t_S RPN3, 26S proteasome re 28.8 1E+02 0.0034 31.1 6.6 61 313-373 232-296 (523)
310 4a1g_A Mitotic checkpoint seri 28.0 2.4E+02 0.0084 22.9 9.7 53 191-243 82-134 (152)
311 4fke_A Aminopeptidase N; zinc 28.0 6.2E+02 0.021 27.6 16.0 86 250-340 691-786 (909)
312 1ug3_A EIF4GI, eukaryotic prot 27.4 2.1E+02 0.0071 26.9 8.5 26 147-172 15-40 (339)
313 2ko4_A Mediator of RNA polymer 26.7 96 0.0033 21.9 4.2 38 62-99 23-62 (81)
314 3qye_A TBC1 domain family memb 26.3 3.9E+02 0.013 24.7 10.7 130 88-225 164-309 (331)
315 4aez_C MAD3, mitotic spindle c 26.2 2.4E+02 0.0081 24.7 7.8 52 294-345 131-183 (223)
316 4b4t_S RPN3, 26S proteasome re 25.8 2.4E+02 0.0083 28.3 8.8 61 245-306 231-299 (523)
317 4ets_A Ferric uptake regulatio 25.7 1.4E+02 0.0049 24.5 6.2 57 101-158 26-84 (162)
318 3ygs_P Procaspase 9; apoptosis 25.4 92 0.0031 23.1 4.5 38 157-194 51-88 (97)
319 2lo3_A SAGA-associated factor 24.9 19 0.00063 21.8 0.3 12 538-549 16-27 (44)
320 3ljn_A Hypothetical protein; a 24.8 1.7E+02 0.0057 27.5 7.5 14 256-269 181-194 (364)
321 3kea_A K1L; tropism, ANK repea 24.3 1.9E+02 0.0067 26.0 7.6 179 255-448 38-223 (285)
322 2zu6_B Programmed cell death p 24.2 2E+02 0.0068 26.7 7.5 60 146-205 169-233 (307)
323 2fe3_A Peroxide operon regulat 24.0 2.1E+02 0.0073 22.8 6.9 37 224-260 35-71 (145)
324 2ijq_A Hypothetical protein; s 24.0 2.9E+02 0.0098 22.7 7.5 60 76-136 36-103 (161)
325 2b7e_A PRE-mRNA processing pro 23.4 65 0.0022 21.4 2.8 30 89-118 2-31 (59)
326 2wvi_A Mitotic checkpoint seri 23.2 3.2E+02 0.011 22.6 10.0 54 191-244 77-130 (164)
327 2d2s_A Exocyst complex compone 23.0 2.8E+02 0.0097 24.4 8.0 23 283-305 24-46 (235)
328 1ug3_A EIF4GI, eukaryotic prot 23.0 4.1E+02 0.014 24.8 9.7 23 77-99 15-37 (339)
329 1w3w_A Annexin A8; coagulation 22.9 4.6E+02 0.016 24.4 10.9 84 20-115 25-120 (327)
330 3hra_A Ankyrin repeat family p 22.7 1.8E+02 0.0063 24.0 6.7 151 84-244 13-172 (201)
331 4gq2_M Nucleoporin NUP120; bet 22.4 6E+02 0.021 27.8 12.2 127 149-291 816-950 (950)
332 2xig_A Ferric uptake regulatio 22.1 3E+02 0.01 22.0 7.5 13 328-340 42-54 (150)
333 4gq2_M Nucleoporin NUP120; bet 22.1 8E+02 0.027 26.8 13.9 128 114-259 816-950 (950)
334 2o03_A Probable zinc uptake re 21.6 1.6E+02 0.0054 23.1 5.5 46 78-123 15-60 (131)
335 3mwm_A ZUR, putative metal upt 21.4 1.4E+02 0.0049 23.7 5.3 47 77-123 17-63 (139)
336 1dm5_A Annexin XII E105K mutan 20.9 2.7E+02 0.0091 25.9 7.7 84 20-115 16-111 (315)
337 1bpo_A Protein (clathrin); cla 20.6 6.2E+02 0.021 25.0 12.7 46 224-272 343-388 (494)
338 3bqo_A Telomeric repeat-bindin 20.6 4E+02 0.014 22.8 11.7 45 159-203 94-146 (211)
339 2w57_A Ferric uptake regulatio 20.5 1.9E+02 0.0066 23.3 5.9 35 124-158 33-67 (150)
340 3eyy_A Putative iron uptake re 20.2 1.9E+02 0.0065 23.1 5.8 30 89-118 33-62 (145)
341 2yru_A Steroid receptor RNA ac 20.2 1.5E+02 0.0051 23.0 4.7 44 94-137 47-90 (118)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-38 Score=338.20 Aligned_cols=426 Identities=10% Similarity=-0.041 Sum_probs=374.9
Q ss_pred chHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcC--CCCChhHHHHH
Q 007998 3 NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQI--NAPSTNDFNAV 79 (582)
Q Consensus 3 ~~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~--~~~~~~~~~~l 79 (582)
.|..++.+|... ++.+.|..++..+++. .++ +.. ++.++..|.+ |++++|..+|+.+ .+++..+|+.+
T Consensus 86 ~~~~~~~~~~~~--g~~~~A~~~~~~~~~~--~p~--~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 156 (597)
T 2xpi_A 86 YLRLWRHDALMQ--QQYKCAAFVGEKVLDI--TGN--PND---AFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLA 156 (597)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHH--HCC--HHH---HHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHH
T ss_pred HHHHHHHHHHHc--cCchHHHHHHHHHHhh--CCC--chH---HHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHH
Confidence 356788888874 4699999999999854 345 544 3789999999 9999999999998 46899999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHhC---------------CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchH
Q 007998 80 LRGLAHSSKPTNAVLWYRQMLRG---------------SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADAL 144 (582)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 144 (582)
+..|.+.|++++|+++|+++... +.+++..+|+.++.++.+.|++++|.++|+.+++.++. +..
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 235 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYE 235 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhH
Confidence 99999999999999999954221 22345789999999999999999999999999987633 333
Q ss_pred HH--------------------------------------HHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHH
Q 007998 145 LG--------------------------------------TTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGL 184 (582)
Q Consensus 145 ~~--------------------------------------~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~ 184 (582)
.+ +.++.+|.+.|++++|.++|+++.. ++..+|+.++.+|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 32 3336677789999999999999987 7999999999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 007998 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264 (582)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 264 (582)
.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.++|++++|
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999876 5688899999999999999999999999999764 45789999999999999999999
Q ss_pred HHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcC
Q 007998 265 FEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342 (582)
Q Consensus 265 ~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 342 (582)
.++|+++. .+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.++|+++.+..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999874 25678899999999999999999999999998753 4477899999999999999999999999999843
Q ss_pred CccChhhHHhhhhHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998 343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-------SMGTD--MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413 (582)
Q Consensus 343 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 413 (582)
+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++.+|+++
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 346789999999999999999999999887 45777 78999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-37 Score=328.33 Aligned_cols=416 Identities=7% Similarity=-0.058 Sum_probs=340.2
Q ss_pred hcCCC-CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007998 51 ALSPL-NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ 129 (582)
Q Consensus 51 ~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 129 (582)
..+.+ |.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 44556 8888999999999989999999999999999999999999999985 56788999999999999999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------------------ChhHHHHHHHHHHhCCCh
Q 007998 130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-------------------DIASWNALIAGLAQGNLA 190 (582)
Q Consensus 130 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~ 190 (582)
+++.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988654 678899999999999999999999999965433 488999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHH--------------------------------------HHHHhccCCcHHHHHH
Q 007998 191 SEAVDLFKRMKMEGVFKPNEVTVLGA--------------------------------------LAACGHLGAWKEGDKI 232 (582)
Q Consensus 191 ~~A~~~~~~m~~~g~~~pd~~t~~~l--------------------------------------l~a~~~~~~~~~a~~~ 232 (582)
++|+++|++|.+.+ +.+...+..+ +..|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999999875 3344443333 4556678899999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 007998 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310 (582)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 310 (582)
|+++.+. +++..+++.++.+|.+.|++++|.++|+++. .+.+..+|+.++.+|.+.|++++|..+|+++.+. .+.
T Consensus 295 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 371 (597)
T 2xpi_A 295 LSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPE 371 (597)
T ss_dssp HHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT
T ss_pred HHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Ccc
Confidence 9998876 5789999999999999999999999999885 3557889999999999999999999999999865 345
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 007998 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGA 388 (582)
Q Consensus 311 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~ 388 (582)
+..++..+...|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++ ... ++..+|..++.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 67899999999999999999999999998832 346789999999999999999999999987 333 478999999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC----CCccCC-cccEEEECCEEEEEE
Q 007998 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR----DVKKVP-GFSYIEVGGVIHKFF 463 (582)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-~~s~~~~~~~~~~~~ 463 (582)
|.+.|++++|.+.|+++++..|.++.+|..++.+|.+.|++++|.++++++.+. +..+.. ...|. .+.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~-------~l~ 523 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA-------NLG 523 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH-------HHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH-------HHH
Confidence 999999999999999999999999999999999999999999999999999765 333321 12222 112
Q ss_pred eCCCCCcchHHHHHHHHHHH
Q 007998 464 TSDKSHVKWREIYEKLDEIM 483 (582)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~l~ 483 (582)
..+..+++.+++...++++.
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 23455677888887666543
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.6e-27 Score=236.16 Aligned_cols=370 Identities=11% Similarity=0.012 Sum_probs=312.3
Q ss_pred hcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH
Q 007998 51 ALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126 (582)
Q Consensus 51 ~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 126 (582)
..+.+ |++++|.+.|+.+. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++...|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 33445 99999999888763 3466677788888899999999999999888753 3467789999999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 007998 127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG--VR-DIASWNALIAGLAQGNLASEAVDLFKRMKME 203 (582)
Q Consensus 127 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 203 (582)
|.+.++.+++.. +.+...+..+..+|.+.|++++|.+.|+++. .| +...+..+...+...|++++|++.|+++.+.
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999998875 3356678899999999999999999998874 23 5567888889999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHH
Q 007998 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWN 281 (582)
Q Consensus 204 g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~ 281 (582)
. +.+..++..+...+...|++++|...++++++... .+...+..+...|...|++++|...|++.. .+.+..+|.
T Consensus 165 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 165 Q--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 5 56788899999999999999999999999998753 367788889999999999999999998654 245678899
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhc
Q 007998 282 TMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360 (582)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 360 (582)
.+...|...|++++|+..|+++.+. .| +..++..+..++.+.|++++|...|+++.+.. +.+...+..+...|.+.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence 9999999999999999999999875 34 45688888999999999999999999998842 45678888999999999
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998 361 GRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428 (582)
Q Consensus 361 g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (582)
|++++|.+.++++ ...| +..+|..+...+.+.|++++|...++++++.+|+++.+|..++.++...|+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999886 4445 578899999999999999999999999999999999999999988877663
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.9e-29 Score=256.93 Aligned_cols=178 Identities=15% Similarity=0.142 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCC---------hhHHHHHHHHHHHcCCCCCCHH
Q 007998 145 LGTTLLDVYAKVGEIVSAKKVFDEMG----VRDIASWNALIAGLAQGNL---------ASEAVDLFKRMKMEGVFKPNEV 211 (582)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~~pd~~ 211 (582)
+++.+|++|++.|++++|.++|++|. .||..+||+||.+|++.+. .++|.++|++|...|+ .||..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~-~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV-VPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-CCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-CCCHH
Confidence 34445555555555555555555553 3455555555555544333 3445555555555554 55555
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc---CCCCHHHHHHHHHHHH
Q 007998 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK---CRKSLVTWNTMVMAFA 288 (582)
Q Consensus 212 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~ 288 (582)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|. ..||..+|++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555555555555555555443 3445555555555555
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007998 289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323 (582)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 323 (582)
+.|+.++|.++|++|.+.|..|+..||+.++..|.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555554444
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.4e-26 Score=230.94 Aligned_cols=355 Identities=14% Similarity=0.049 Sum_probs=312.2
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 007998 79 VLRGLAHSSKPTNAVLWYRQMLRGSHRSD-ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157 (582)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 157 (582)
+...+.+.|++++|++.++++.+. .|+ ...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677889999999999999875 344 4556666777889999999999999998875 557889999999999999
Q ss_pred CHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHH
Q 007998 158 EIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234 (582)
Q Consensus 158 ~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~ 234 (582)
++++|...|+++. ..+..+|..+...+.+.|++++|++.|.++.+.. +.+...+..+...+...|++++|.+.+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999874 3356789999999999999999999999999875 5566778888899999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-C
Q 007998 235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-D 311 (582)
Q Consensus 235 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~ 311 (582)
++++.. +.+...+..+...|.+.|++++|...|+++. .+.+...|..+...+...|++++|+..|++.... .| +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC
Confidence 999875 3367899999999999999999999999875 3556788999999999999999999999999875 45 4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 007998 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SM-GTDMVLWQTLLGAC 389 (582)
Q Consensus 312 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~ 389 (582)
..++..+..++...|++++|...|+++.+.+ +.+...|..+...|.+.|++++|.+.++++ .. +++..+|..+...+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 6788899999999999999999999999843 234678899999999999999999999987 22 34788999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
...|++++|...++++++..|+++.++..++.+|.+.|++++|...++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999864
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.2e-28 Score=253.16 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=165.8
Q ss_pred HHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC---------HH
Q 007998 91 NAVLWYRQMLRGSHRSDAL-TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE---------IV 160 (582)
Q Consensus 91 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~~ 160 (582)
.+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||++|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4455666666666655443 5777788888888888888888888888888888888888888876654 78
Q ss_pred HHHHHHhhcC----CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHH
Q 007998 161 SAKKVFDEMG----VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236 (582)
Q Consensus 161 ~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 236 (582)
.|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+ .||..||+++|.+|++.|++++|.++|++|
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999995 57999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc---CCCCHHHHHHHHHHHHhC
Q 007998 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK---CRKSLVTWNTMVMAFAVH 290 (582)
Q Consensus 237 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~ 290 (582)
.+.|+.||..+|++||++|++.|++++|.++|++|. ..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999996 689999999999988754
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4e-23 Score=217.01 Aligned_cols=391 Identities=8% Similarity=-0.097 Sum_probs=310.8
Q ss_pred HHHHhcCCC-CCHHHHHHHHhcCC--CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 007998 47 IEFYALSPL-NELAYAHALFRQIN--APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123 (582)
Q Consensus 47 ~~li~~y~~-g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 123 (582)
..+...|.+ |++++|...|+++. .||...|..+...+.+.|++++|+..|+++.+.++ .+..++..+..++...|+
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhh
Confidence 455566667 99999999998875 47888999999999999999999999999987642 255688888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHH-------------------------------------
Q 007998 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF------------------------------------- 166 (582)
Q Consensus 124 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f------------------------------------- 166 (582)
+++|.+.++.+.+.+. ++......++..+.+......+.+.+
T Consensus 89 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp HHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 9999999999988764 33344444444444332222222222
Q ss_pred -hhcC---------CC-ChhHHHHHHHHHHh---CCChhHHHHHHHHHHH-----cCCCC-------CCHHHHHHHHHHH
Q 007998 167 -DEMG---------VR-DIASWNALIAGLAQ---GNLASEAVDLFKRMKM-----EGVFK-------PNEVTVLGALAAC 220 (582)
Q Consensus 167 -~~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~~-------pd~~t~~~ll~a~ 220 (582)
.... .+ +...|......+.. .|++++|+..|+++.+ ....+ .+..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 1110 01 24455555555554 8999999999999988 31102 2345778888899
Q ss_pred hccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHH
Q 007998 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALE 298 (582)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 298 (582)
...|++++|...++.+.+.... ...+..+...|.+.|++++|...|+++. .+.+...|..+...|...|++++|+.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999988644 8889999999999999999999999765 24567889999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC----C
Q 007998 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV----S 374 (582)
Q Consensus 299 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 374 (582)
.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ +
T Consensus 326 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 326 DFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 999998853 2345688888999999999999999999999842 335678888999999999999999999876 3
Q ss_pred CCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 375 MGTD----MVLWQTLLGACQL---YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 375 ~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
..++ ...|..+...+.. .|++++|...++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 2233 4588999999999 9999999999999999999999999999999999999999999999988754
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.5e-22 Score=209.02 Aligned_cols=295 Identities=8% Similarity=0.004 Sum_probs=174.3
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 007998 71 PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150 (582)
Q Consensus 71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 150 (582)
.++..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++.+++.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 356678888888888888888888888887653 2356677778888888888888888888888775 33566777788
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC---Ch---hHHHHHHHH------------HHhCCChhHHHHHHHHHHHcCCCCCCHHH
Q 007998 151 DVYAKVGEIVSAKKVFDEMGVR---DI---ASWNALIAG------------LAQGNLASEAVDLFKRMKMEGVFKPNEVT 212 (582)
Q Consensus 151 ~~y~~~g~~~~A~~~f~~m~~~---~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~~pd~~t 212 (582)
.+|.+.|++++|.+.|+++... +. ..|..++.. +.+.|++++|+..|+++.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH
Confidence 8888888888888888776432 23 455555333 666666666666666666554 445556
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHH-------
Q 007998 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTM------- 283 (582)
Q Consensus 213 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~l------- 283 (582)
+..+..++...|++++|..+++++.+.. +.+..++..+..+|.+.|++++|...|+++. .+.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 6666666666666666666666665543 2245555566666666666666666665543 12233333333
Q ss_pred -----HHHHHhCCChhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhh
Q 007998 284 -----VMAFAVHGDGPRALELFEQMGRAGVKPD-----DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353 (582)
Q Consensus 284 -----i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (582)
+..+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...++++.+.. +.+...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 44444455555555555554442 222 1234444444444455555555444444321 1233444444
Q ss_pred hhHHhhcCCHHHHHHHHHhC
Q 007998 354 VDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 354 i~~~~~~g~~~~A~~~~~~~ 373 (582)
..+|...|++++|.+.++++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 44444444444444444443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2e-22 Score=208.14 Aligned_cols=339 Identities=12% Similarity=0.032 Sum_probs=276.2
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007998 91 NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG 170 (582)
Q Consensus 91 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (582)
.+...|....... +.+...+..+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444432 2356678888999999999999999999999875 4578899999999999999999999999874
Q ss_pred ---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCH---HHHHHH------------HHHHhccCCcHHHHHH
Q 007998 171 ---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE---VTVLGA------------LAACGHLGAWKEGDKI 232 (582)
Q Consensus 171 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~---~t~~~l------------l~a~~~~~~~~~a~~~ 232 (582)
..+..+|..+...|.+.|++++|++.|+++.+.. +.+. ..+..+ ...+...|++++|...
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3467899999999999999999999999998864 3344 555555 4448899999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 007998 233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310 (582)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 310 (582)
++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. .+.+..+|..++..|...|++++|+..|+++.+. .|
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p 242 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQ 242 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 99999875 3478899999999999999999999999874 2567899999999999999999999999999874 45
Q ss_pred CH-HHHHHH------------HHHHHcCCCHHHHHHHHHHHhHcCCccC-----hhhHHhhhhHHhhcCCHHHHHHHHHh
Q 007998 311 DD-VSYLAA------------LCACNHAGLVDDGVRLFNSMANCGVKPN-----MKHYGSVVDLLGRAGRLQEACDIVKS 372 (582)
Q Consensus 311 ~~-~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 372 (582)
+. ..+..+ ..+|.+.|++++|..+|+++.+. .|+ ..++..+..+|.+.|++++|.+.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44 334333 78899999999999999999983 233 45788999999999999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH------------HHHHhcC-----CchHHH
Q 007998 373 V-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS------------NLYAAYE-----RWDDVG 433 (582)
Q Consensus 373 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~ 433 (582)
+ ...| +...|..+..+|...|++++|...++++++++|+++..+..++ +.|...| +.+++.
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 6 4345 7899999999999999999999999999999999999999988 4455556 445556
Q ss_pred HHHHH
Q 007998 434 RVRKA 438 (582)
Q Consensus 434 ~~~~~ 438 (582)
+.+++
T Consensus 401 ~~y~~ 405 (450)
T 2y4t_A 401 KAYRK 405 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.5e-22 Score=212.69 Aligned_cols=391 Identities=9% Similarity=-0.100 Sum_probs=307.7
Q ss_pred ccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchH
Q 007998 16 AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTN 91 (582)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 91 (582)
.++.+.|...+..+++.. ++ +... ..+...|.+ |++++|...|+++. +.+..+|..+...+.+.|++++
T Consensus 19 ~g~~~~A~~~~~~al~~~--p~--~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--ED--PVFY---SNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--CC--HHHH---HHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHHHHHHhcC--cc--HHHH---HhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence 467888999999999876 35 5543 688899989 99999999999764 4577899999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----------------------------------
Q 007998 92 AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR----------------------------------- 136 (582)
Q Consensus 92 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------------------------------- 136 (582)
|+..|+++...+. ++......++..+........+.+.+..+..
T Consensus 92 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 9999999998764 3444444444444332222222222211100
Q ss_pred cCC---------CCchHHHHHHHHHHHh---cCCHHHHHHHHhhcCC----------------C-ChhHHHHHHHHHHhC
Q 007998 137 HGF---------LADALLGTTLLDVYAK---VGEIVSAKKVFDEMGV----------------R-DIASWNALIAGLAQG 187 (582)
Q Consensus 137 ~g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~f~~m~~----------------~-~~~~~~~li~~~~~~ 187 (582)
... +.+...+..+...+.. .|++++|...|+++.. + +..+|..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 000 1123444444444554 8999999999987644 2 356788999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007998 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267 (582)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 267 (582)
|++++|+..|+++.+.. |+..++..+..++...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...
T Consensus 251 ~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999885 338889999999999999999999999998875 33678899999999999999999999
Q ss_pred Hhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCc
Q 007998 268 FDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVK 344 (582)
Q Consensus 268 ~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~ 344 (582)
|++.. .+.+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+ ..-.
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 327 FDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 99764 24567889999999999999999999999998752 23456888889999999999999999999987 2222
Q ss_pred cC----hhhHHhhhhHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 345 PN----MKHYGSVVDLLGR---AGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 345 ~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 22 3478889999999 99999999999886 3334 68889999999999999999999999999999988776
Q ss_pred HHHH
Q 007998 416 FVLL 419 (582)
Q Consensus 416 ~~~l 419 (582)
+..+
T Consensus 486 ~~~~ 489 (514)
T 2gw1_A 486 LQAI 489 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.2e-20 Score=199.22 Aligned_cols=386 Identities=10% Similarity=-0.009 Sum_probs=278.9
Q ss_pred HHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 007998 46 IIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121 (582)
Q Consensus 46 ~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 121 (582)
|..+...|.+ |++++|...|+++. +.+...|..+...|.+.|++++|++.|+++.+.++ .+..++..+..++...
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHc
Confidence 3455555656 77777777777653 34666777777777777777777777777766532 2455666677777777
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----------------------------
Q 007998 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR----------------------------- 172 (582)
Q Consensus 122 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~----------------------------- 172 (582)
|++++|.+.++ .+... |+. .+..+..+...+....|...++++...
T Consensus 107 g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 77777777775 33221 111 111223333344444555555444221
Q ss_pred --------Chh---HHHHHHHHHHhC--------CChhHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHhccCCc
Q 007998 173 --------DIA---SWNALIAGLAQG--------NLASEAVDLFKRMKMEGVFKPNE-------VTVLGALAACGHLGAW 226 (582)
Q Consensus 173 --------~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~~pd~-------~t~~~ll~a~~~~~~~ 226 (582)
+.. .+..+...+... |++++|+.+|+++.+.. +.+. .++..+...+...|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 110 222333222222 47899999999998764 3333 3566777788889999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304 (582)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 304 (582)
++|...+..+.+.. |+...+..+...|...|++++|.+.|++.. .+.+..+|..+...|...|++++|+..|+++.
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999875 447888899999999999999999999764 35678899999999999999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCC---
Q 007998 305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV----SMGT--- 377 (582)
Q Consensus 305 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p--- 377 (582)
+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...|...|++++|.+.++++ +..+
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 853 2235678889999999999999999999999843 345678888999999999999999999876 1111
Q ss_pred -CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 378 -DMVLWQTLLGACQLY----------GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 378 -~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
....+..+...+... |++++|...++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 233345556677777 999999999999999999999999999999999999999999999988654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=6.1e-20 Score=193.89 Aligned_cols=386 Identities=8% Similarity=-0.045 Sum_probs=289.7
Q ss_pred ccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchH
Q 007998 16 AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTN 91 (582)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 91 (582)
.++.+.|...+..+++.... + +.. |..+...|.+ |++++|.+.|+++. +.+..+|..+...+...|++++
T Consensus 38 ~g~~~~A~~~~~~al~~~p~-~--~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDPN-E--PVF---YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCTT-C--HHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred hccHHHHHHHHHHHHhhCCC-C--cHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHH
Confidence 45677788888888886522 2 333 4788888988 99999999999864 4578899999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCchH---------------------
Q 007998 92 AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG------FLADAL--------------------- 144 (582)
Q Consensus 92 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~--------------------- 144 (582)
|+..|+.+ .. .|+.. ...+..+...+....|...++.++... ..|+..
T Consensus 112 A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 99999744 32 22221 112333344445567777777765431 111111
Q ss_pred ---------HHHHHHHHHHhc--------CCHHHHHHHHhhcCCC---C-------hhHHHHHHHHHHhCCChhHHHHHH
Q 007998 145 ---------LGTTLLDVYAKV--------GEIVSAKKVFDEMGVR---D-------IASWNALIAGLAQGNLASEAVDLF 197 (582)
Q Consensus 145 ---------~~~~li~~y~~~--------g~~~~A~~~f~~m~~~---~-------~~~~~~li~~~~~~g~~~~A~~~~ 197 (582)
....+...+... |++++|..+|+++... + ..+|..+...+...|++++|++.|
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 233333333322 4789999999988543 2 235777788899999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCC
Q 007998 198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRK 275 (582)
Q Consensus 198 ~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~ 275 (582)
++.... .|+..++..+...+...|++++|...+..+.+... .+..++..+...|...|++++|.+.|++.. .+.
T Consensus 267 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 267 QESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 999987 56688999999999999999999999999998763 368889999999999999999999999764 245
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCC-ccC----hhhH
Q 007998 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV-KPN----MKHY 350 (582)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~ 350 (582)
+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+++.+... .++ ...+
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 67899999999999999999999999998863 33456888889999999999999999999987321 111 1123
Q ss_pred HhhhhHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998 351 GSVVDLLGRA----------GRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417 (582)
Q Consensus 351 ~~li~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 417 (582)
..+...|.+. |++++|...+++. ...| +...|..+...+...|++++|...+++++++.|.++....
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3345667777 9999999999987 3334 6788999999999999999999999999999998765543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.3e-18 Score=173.12 Aligned_cols=308 Identities=12% Similarity=0.019 Sum_probs=193.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 007998 108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGL 184 (582)
Q Consensus 108 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~ 184 (582)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++.. ..+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4456666777777788888888887777764 3356677777777777777777777777653 23556777777777
Q ss_pred HhCCChhHHHHHHHHHHHcCCCC---CCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 007998 185 AQGNLASEAVDLFKRMKMEGVFK---PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261 (582)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~---pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 261 (582)
...|++++|+..|++..+.. + .+...+..+..... ...+..+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 77777777777777776552 2 23333333311000 00112234555566666
Q ss_pred HHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 007998 262 DKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339 (582)
Q Consensus 262 ~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 339 (582)
++|.+.|+++. .+.+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666665543 23445556666666666666666666666665531 2234455556666666666666666666665
Q ss_pred HcCCccChhhH------------HhhhhHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChHHHHHH
Q 007998 340 NCGVKPNMKHY------------GSVVDLLGRAGRLQEACDIVKSV-SMGTD-M----VLWQTLLGACQLYGDVEMAEIA 401 (582)
Q Consensus 340 ~~~~~~~~~~~------------~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~ 401 (582)
+.. +.+...+ ..+...+.+.|++++|.+.++++ ...|+ . ..|..+...+...|++++|...
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 521 1111111 12355677788888888887765 22232 2 2344566778888888888888
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888877643
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1e-18 Score=173.84 Aligned_cols=315 Identities=10% Similarity=0.003 Sum_probs=221.2
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 007998 72 STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD 151 (582)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 151 (582)
|+..|..+...+...|++++|+..|+++.+..+ .+..++..+...+...|++++|...++.+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 456788999999999999999999999988643 357788899999999999999999999999885 346788999999
Q ss_pred HHHhcCCHHHHHHHHhhcCCC------ChhHHHHH------------HHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHH
Q 007998 152 VYAKVGEIVSAKKVFDEMGVR------DIASWNAL------------IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV 213 (582)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~~------~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~ 213 (582)
+|.+.|++++|...|++.... +...|..+ ...+...|++++|++.|+++.+.. +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHH
Confidence 999999999999999988542 33444444 345556666666666666655543 3444455
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCCh
Q 007998 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293 (582)
Q Consensus 214 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (582)
..+...+...|++++|...++.+.+.. +.+..+|..+...|...|++
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK---------------------------------SDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC---------------------------------SCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 555555555555555555555554432 22344444444445555555
Q ss_pred hHHHHHHHHHHhcCCCCCH-HH------------HHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh----hhHHhhhhH
Q 007998 294 PRALELFEQMGRAGVKPDD-VS------------YLAALCACNHAGLVDDGVRLFNSMANCGVKPNM----KHYGSVVDL 356 (582)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~-~t------------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~ 356 (582)
++|+..|++..+. .|+. .. ...+...+.+.|++++|...++++.+.... +. ..+..+...
T Consensus 205 ~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 205 ELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHH
Confidence 5555555544442 1221 11 122355677788888888888888773211 22 234557778
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 007998 357 LGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426 (582)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 426 (582)
|...|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.....+..++...
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 88889999999888876 3334 7888999999999999999999999999999999988888877776543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.1e-18 Score=168.49 Aligned_cols=284 Identities=11% Similarity=-0.013 Sum_probs=177.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007998 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 218 (582)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~ 218 (582)
+..++..+...+...|++++|.++|+++. ..+...+..++..+...|++++|+.+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHH
Confidence 33444445555555555555555555542 1233444445555555566666666666655543 344555555555
Q ss_pred HHhccC-CcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhH
Q 007998 219 ACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPR 295 (582)
Q Consensus 219 a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~ 295 (582)
.+...| ++++|...++++.+.. +.+...+..+...|...|++++|.+.|++.. .+.+...|..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 666666 5666666666655543 2245556666666666666666666666543 13344556666666667777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcC--------CccChhhHHhhhhHHhhcCCHHHHH
Q 007998 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG--------VKPNMKHYGSVVDLLGRAGRLQEAC 367 (582)
Q Consensus 296 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~ 367 (582)
|+..|++..+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+...|.+.|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777666532 2234566666667777777777777777666511 1233456777777888888888888
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH-hcCCc
Q 007998 368 DIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA-AYERW 429 (582)
Q Consensus 368 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~ 429 (582)
+.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.++. ..|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 887765 2223 56778888888888899999999999998888888888888888873 44543
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=3e-19 Score=176.45 Aligned_cols=342 Identities=11% Similarity=0.018 Sum_probs=161.4
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998 56 NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135 (582)
Q Consensus 56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 135 (582)
|++++|...+++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++.+.
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999997664 9999999999999999999999763 577899999999999999999999888877
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 007998 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG 215 (582)
Q Consensus 136 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ 215 (582)
+. .+++.+.+.|+.+|.++|++++++++|+. |+..+|+.+...|...|++++|...|..+ ..|..
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~ 153 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGR 153 (449)
T ss_dssp ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------TCHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHH
Confidence 75 45678899999999999999999988864 67789999999999999999999999977 25899
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhH
Q 007998 216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295 (582)
Q Consensus 216 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (582)
+..++.++|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|.+++
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCHHH
Confidence 999999999999999999887 378999999999999999999988777654 333334468999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhHcCCcc------ChhhHHhhhhHHhhcCCHHHHH
Q 007998 296 ALELFEQMGRAGVKPDDVSYLAALCACNH--AGLVDDGVRLFNSMANCGVKP------NMKHYGSVVDLLGRAGRLQEAC 367 (582)
Q Consensus 296 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~ 367 (582)
|+.+++...... +-....|+-+.-++++ .+++.+..+.|..- -+++| +..+|..++-.|..-++++.|.
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 999999987543 2233455555555554 44555555555422 34555 4678999999999999999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 007998 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVR 436 (582)
Q Consensus 368 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 436 (582)
..+-+-+ |+..--..+.....+..+.+.--+...-.++..| ...+.|..++...=+...+.+++
T Consensus 303 ~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~ 366 (449)
T 1b89_A 303 ITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYF 366 (449)
T ss_dssp HHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred HHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHH
Confidence 8766553 1211112223333445555544444444444444 33444444444433444444433
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=4.6e-17 Score=160.05 Aligned_cols=282 Identities=9% Similarity=-0.054 Sum_probs=172.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHH
Q 007998 109 LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLA 185 (582)
Q Consensus 109 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~ 185 (582)
..+..+...+...|++++|.++++.+++.. +.+...+..++..+.+.|++++|...|+++. ..+...|..+...+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 334444444444455555555555544443 2223333444444455555555555554442 123445555555566
Q ss_pred hCC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 007998 186 QGN-LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264 (582)
Q Consensus 186 ~~g-~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 264 (582)
..| ++++|++.|++..... +.+...+..+...+...|++++|...++++.+.... +...+..+...|...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHH
Confidence 666 5666666666665543 344555666666666666666666666666655322 344555567777777777777
Q ss_pred HHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007998 265 FEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG--------VKPDDVSYLAALCACNHAGLVDDGVRL 334 (582)
Q Consensus 265 ~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~t~~~ll~a~~~~g~~~~a~~~ 334 (582)
.+.|++.. .+.+...|..+...|...|++++|+..|++..+.. .+.+..++..+..++...|++++|...
T Consensus 179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777553 23456677777777777888888887777776531 122345777788888888888888888
Q ss_pred HHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCCh
Q 007998 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGAC-QLYGDV 395 (582)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~~ 395 (582)
++++.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++ ...|+.
T Consensus 259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 88888733 235667778888888888888888888876 5555 566777777666 344543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=9e-18 Score=168.07 Aligned_cols=279 Identities=12% Similarity=-0.031 Sum_probs=209.3
Q ss_pred hcCCHHHHHH-HHhhcCC---C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCc
Q 007998 155 KVGEIVSAKK-VFDEMGV---R----DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW 226 (582)
Q Consensus 155 ~~g~~~~A~~-~f~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~ 226 (582)
-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCH
Confidence 3466777776 6664421 1 34557777777788888888888888877765 56677777777778888888
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC-CHHHHHH---------------HHHHHHh
Q 007998 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK-SLVTWNT---------------MVMAFAV 289 (582)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~-~~~~~~~---------------li~~~~~ 289 (582)
++|...++++++.. +.+..++..+...|.+.|++++|.+.|+++. ..| +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888888777765 3366777778888888888888888887654 122 2222221 1333348
Q ss_pred CCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHH
Q 007998 290 HGDGPRALELFEQMGRAGVK-PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368 (582)
Q Consensus 290 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 368 (582)
.|++++|+..|+++.+.... ++..++..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|.+
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999875321 147788889999999999999999999998842 3456788899999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------chhHHHHHHHHHhcCCchHHHHH
Q 007998 369 IVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN-----------CGDFVLLSNLYAAYERWDDVGRV 435 (582)
Q Consensus 369 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~ 435 (582)
.++++ ...| +...|..+...+...|++++|...++++++..|++ +.++..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99886 3334 68899999999999999999999999999998877 78999999999999999999998
Q ss_pred HH
Q 007998 436 RK 437 (582)
Q Consensus 436 ~~ 437 (582)
++
T Consensus 353 ~~ 354 (368)
T 1fch_A 353 DA 354 (368)
T ss_dssp HT
T ss_pred HH
Confidence 76
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.5e-15 Score=158.31 Aligned_cols=354 Identities=11% Similarity=0.017 Sum_probs=292.0
Q ss_pred CCChhHHHHHHHHHHc----CCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCC
Q 007998 70 APSTNDFNAVLRGLAH----SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR----VLALFETLQIHSHVLRHGFLA 141 (582)
Q Consensus 70 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 141 (582)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.++...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4577888888888887 889999999999998764 55677777788887 889999999999998876
Q ss_pred chHHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCCHHH
Q 007998 142 DALLGTTLLDVYAK----VGEIVSAKKVFDEMGVR-DIASWNALIAGLAQ----GNLASEAVDLFKRMKMEGVFKPNEVT 212 (582)
Q Consensus 142 ~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~pd~~t 212 (582)
++..+..|..+|.. .++.++|.+.|++.... +..++..+...|.. .+++++|++.|++..+.| +...
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a 185 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWS 185 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHH
Confidence 55667778888888 88999999999887543 67788888888887 789999999999988765 5677
Q ss_pred HHHHHHHHhc----cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcccCCCCHHHHHHHH
Q 007998 213 VLGALAACGH----LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK----CGLLDKAFEVFDNIKCRKSLVTWNTMV 284 (582)
Q Consensus 213 ~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~li 284 (582)
+..+...+.. .++.++|...+.+..+.+ +...+..+..+|.. .+++++|.+.|++.....+...+..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777776 789999999999998875 56778888888887 789999999999876356777888888
Q ss_pred HHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHhHcCCccChhhHHhhhh
Q 007998 285 MAFAV----HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA-----GLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355 (582)
Q Consensus 285 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 355 (582)
..|.. .++.++|+..|++..+.| +...+..+...+... +++++|...|++..+.+ +...+..|..
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 336 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGA 336 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 88888 899999999999998764 445666677777776 89999999999998854 3456667777
Q ss_pred HHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh---
Q 007998 356 LLGRAG---RLQEACDIVKSVSMGTDMVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA--- 425 (582)
Q Consensus 356 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 425 (582)
+|.+.| ++++|.+.|++.-...+...+..|...|.. .+++++|...++++.+.+ ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 887766 788999999877323578888999999988 899999999999998875 57789999999998
Q ss_pred -cCCchHHHHHHHHHHhCCC
Q 007998 426 -YERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 426 -~g~~~~a~~~~~~m~~~~~ 444 (582)
.+++++|...+++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999887663
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=2.8e-16 Score=165.69 Aligned_cols=391 Identities=8% Similarity=-0.010 Sum_probs=287.1
Q ss_pred chHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHH-
Q 007998 44 SKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC- 118 (582)
Q Consensus 44 ~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~- 118 (582)
..|..++.. .+ |++++|+.+|+++. +.+...|..++..+.+.|++++|..+|++++.. .|+...|...+...
T Consensus 14 ~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 14 DAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVR 90 (530)
T ss_dssp HHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHH
Confidence 346788884 55 99999999999874 346778999999999999999999999999885 36766777666533
Q ss_pred HhcCChHHHHH----HHHHHHHc-CCCC-chHHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CC---hhHHHH
Q 007998 119 ARVLALFETLQ----IHSHVLRH-GFLA-DALLGTTLLDVYAK---------VGEIVSAKKVFDEMGV-RD---IASWNA 179 (582)
Q Consensus 119 ~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~f~~m~~-~~---~~~~~~ 179 (582)
...|+.+.|++ +|+.++.. |..| +..+|...+....+ .|+++.|.++|++... |+ ...|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 34577766655 77777653 5433 46788888877665 7899999999998753 32 234443
Q ss_pred HHHHH-------------HhCCChhHHHHHHHHHH------HcC---CCCCCH--------HHHHHHHHHHhc----cCC
Q 007998 180 LIAGL-------------AQGNLASEAVDLFKRMK------MEG---VFKPNE--------VTVLGALAACGH----LGA 225 (582)
Q Consensus 180 li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~~pd~--------~t~~~ll~a~~~----~~~ 225 (582)
..... .+.+++..|..++.++. +.. + +|+. ..|...+..... .++
T Consensus 171 ~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~-~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 171 YNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV-PPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC-CCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC-CCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 32211 13456777877777632 221 2 4442 344444433222 123
Q ss_pred c----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhccc--C-CCCHHHHHHHH
Q 007998 226 W----KEGDKIHEYIREERLDMNVVVCNAVIDMYAK-------CGLLD-------KAFEVFDNIK--C-RKSLVTWNTMV 284 (582)
Q Consensus 226 ~----~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~--~-~~~~~~~~~li 284 (582)
. +.+..+|++.+... +.+..+|..++..+.+ .|+++ +|..+|++.. . +.+...|..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3 36778899888864 3468888888888876 79987 8999999765 1 34688999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhH-HhhcC
Q 007998 285 MAFAVHGDGPRALELFEQMGRAGVKPDD--VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL-LGRAG 361 (582)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g 361 (582)
..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|..+|++..+.. +.+...|...... +...|
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcC
Confidence 9999999999999999999984 5653 478888888889999999999999998732 1223333322222 34689
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch----hHHHHHHHHHhcCCchHHHHH
Q 007998 362 RLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG----DFVLLSNLYAAYERWDDVGRV 435 (582)
Q Consensus 362 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~ 435 (582)
++++|.++|++. ...| +...|..++..+...|+.++|..+|+++++..|.++. .+...+......|+.+.+..+
T Consensus 406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~ 485 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 485 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999976 3334 6889999999999999999999999999998876654 677778888889999999999
Q ss_pred HHHHHhC
Q 007998 436 RKAMKNR 442 (582)
Q Consensus 436 ~~~m~~~ 442 (582)
.+++.+.
T Consensus 486 ~~r~~~~ 492 (530)
T 2ooe_A 486 EKRRFTA 492 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=9.3e-16 Score=159.98 Aligned_cols=351 Identities=12% Similarity=0.027 Sum_probs=292.2
Q ss_pred CCHHHHHHHHhcCC-CCChhHHHHHHHHHHc----CCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChHH
Q 007998 56 NELAYAHALFRQIN-APSTNDFNAVLRGLAH----SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR----VLALFE 126 (582)
Q Consensus 56 g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~ 126 (582)
++++.|...|++.. ..+..++..|...|.. .+++++|+..|++..+.| +...+..+...+.. .+++++
T Consensus 57 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 89999999998754 3577889999999998 899999999999998865 56677777778877 789999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCChhHHHHHH
Q 007998 127 TLQIHSHVLRHGFLADALLGTTLLDVYAK----VGEIVSAKKVFDEMGV-RDIASWNALIAGLAQ----GNLASEAVDLF 197 (582)
Q Consensus 127 a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~ 197 (582)
|.+.++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|++.|
T Consensus 134 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 134 SVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWY 210 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 999999998886 56677888888988 8899999999988753 478889999999988 89999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHh
Q 007998 198 KRMKMEGVFKPNEVTVLGALAACGH----LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK----CGLLDKAFEVFD 269 (582)
Q Consensus 198 ~~m~~~g~~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~ 269 (582)
++..+.| +..++..+...+.. .++.++|..++++..+.+ +...+..+..+|.. .++.++|.+.|+
T Consensus 211 ~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 211 RKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 9998765 45667777777765 789999999999998865 56677788888888 899999999999
Q ss_pred cccCCCCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHhHc
Q 007998 270 NIKCRKSLVTWNTMVMAFAVH-----GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG---LVDDGVRLFNSMANC 341 (582)
Q Consensus 270 ~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~ 341 (582)
+.....+...+..+...|... +++++|+..|++..+.| +...+..+...+...| +.++|.++|++..+.
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 876355778888899999887 89999999999998865 4456667777777766 789999999999985
Q ss_pred CCccChhhHHhhhhHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC--
Q 007998 342 GVKPNMKHYGSVVDLLGR----AGRLQEACDIVKSVSMGTDMVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSN-- 411 (582)
Q Consensus 342 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~-- 411 (582)
.+...+..|..+|.. .+++++|.+.|++.-...+...+..|...|.. .+++++|...|+++.+.+|+
T Consensus 361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 356777788888888 89999999999987323468888889998988 89999999999999999954
Q ss_pred -CchhHHHHHHHHHh
Q 007998 412 -NCGDFVLLSNLYAA 425 (582)
Q Consensus 412 -~~~~~~~l~~~~~~ 425 (582)
++.....|+.++..
T Consensus 438 ~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 438 GTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHhcCHh
Confidence 66666666655543
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.7e-16 Score=163.11 Aligned_cols=369 Identities=10% Similarity=-0.040 Sum_probs=249.4
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHHHHHHHhC-----C--CCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----
Q 007998 72 STNDFNAVLRGLAHSSKPTNAVLWYRQMLRG-----S--HRS-DALTCSFALKACARVLALFETLQIHSHVLRHG----- 138 (582)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 138 (582)
....||.|...+...|++++|++.|++.++. + ..| ...+|..+..++...|++++|...++.+++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3557899999999999999999999887541 1 123 34578889999999999999999998886531
Q ss_pred -C-CCchHHHHHHHHHHHhc--CCHHHHHHHHhhcC---CCChhHHHHHHHH---HHhCCChhHHHHHHHHHHHcCCCCC
Q 007998 139 -F-LADALLGTTLLDVYAKV--GEIVSAKKVFDEMG---VRDIASWNALIAG---LAQGNLASEAVDLFKRMKMEGVFKP 208 (582)
Q Consensus 139 -~-~~~~~~~~~li~~y~~~--g~~~~A~~~f~~m~---~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~p 208 (582)
. .....+++.+..++.+. +++++|...|++.. ..+...+..+... +...++.++|++.|++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Cc
Confidence 1 11235566555555554 46899999998764 2355566655544 445688889999999988775 56
Q ss_pred CHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHH
Q 007998 209 NEVTVLGALAACGH----LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNT 282 (582)
Q Consensus 209 d~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 282 (582)
+..++..+...+.. .++.++|.+++++..+.. +.+..++..+...|.+.|++++|...|++.. .+.+..+|..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 67777766655544 467889999999988875 3467788899999999999999999998764 2456677777
Q ss_pred HHHHHHhC-------------------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCC
Q 007998 283 MVMAFAVH-------------------GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV 343 (582)
Q Consensus 283 li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 343 (582)
+...|... +..++|+..|++..+.. +.+..++..+...+...|++++|...|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 77666432 33567888888877642 22335677888899999999999999999988443
Q ss_pred ccCh--hhHHhhhh-HHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998 344 KPNM--KHYGSVVD-LLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419 (582)
Q Consensus 344 ~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 419 (582)
.+.. ..+..+.. .+...|++++|++.|++. .+.|+...+... .+.+..++++.++.+|+++.+|..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3322 12223332 235679999999999875 556664433322 3456678888899999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCccCCcccEE
Q 007998 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453 (582)
Q Consensus 420 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 453 (582)
+.+|...|++++|.+.+++..+.+...+...+|+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHCC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999988776555556664
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=7.4e-18 Score=168.73 Aligned_cols=262 Identities=9% Similarity=-0.056 Sum_probs=209.9
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252 (582)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 252 (582)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++++.. +.+...+..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 45568888888889999999999999988875 6678888888899999999999999999888875 33578888899
Q ss_pred HHHHhcCCHHHHHHHHhccc-CCCC-----------HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCC-CCHHHHHHHH
Q 007998 253 DMYAKCGLLDKAFEVFDNIK-CRKS-----------LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK-PDDVSYLAAL 319 (582)
Q Consensus 253 ~~y~~~g~~~~A~~~~~~~~-~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll 319 (582)
..|.+.|++++|.+.|+++. ..|+ ...+..+...+...|++++|+..|+++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999998764 1121 223445578889999999999999999885322 1577888999
Q ss_pred HHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007998 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEM 397 (582)
Q Consensus 320 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 397 (582)
..+...|++++|...|+++.+.. +.+...|..+..+|.+.|++++|.+.++++ ...| +..+|..+...|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998843 345778999999999999999999999876 3345 58899999999999999999
Q ss_pred HHHHHHHHHHcCCC------------CchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998 398 AEIASRKLVEMGSN------------NCGDFVLLSNLYAAYERWDDVGRVRKA 438 (582)
Q Consensus 398 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 438 (582)
|...+++++++.|+ +...+..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998875 367889999999999999988887653
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=6e-17 Score=162.08 Aligned_cols=285 Identities=11% Similarity=-0.006 Sum_probs=146.2
Q ss_pred CCCchHHHH-HHHHHHhCCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 007998 86 SSKPTNAVL-WYRQMLRGSH---RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS 161 (582)
Q Consensus 86 ~g~~~~A~~-~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 161 (582)
.|++++|++ .|++...... ..+...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 6665543211 1123456666666777777777777777777664 3355666677777777777777
Q ss_pred HHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHH---------------HHHHhcc
Q 007998 162 AKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA---------------LAACGHL 223 (582)
Q Consensus 162 A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~l---------------l~a~~~~ 223 (582)
|...|++.. ..+..+|..+...|...|++++|++.|+++.... +.+...+... +..+...
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777776553 3356677777777777777777777777777653 2222222111 1111244
Q ss_pred CCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303 (582)
Q Consensus 224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (582)
|++++|...++++++..... ++..+|..+...|...|++++|+..|+++
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTS-------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTS-------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCc-------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444432111 02444444455555555555555555544
Q ss_pred HhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-----
Q 007998 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT----- 377 (582)
Q Consensus 304 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----- 377 (582)
.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|.+.++++ ...|
T Consensus 244 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 244 LSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 4421 1123444444445555555555555555544421 123344444555555555555555555443 1001
Q ss_pred -------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998 378 -------DMVLWQTLLGACQLYGDVEMAEIASRKLV 406 (582)
Q Consensus 378 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 406 (582)
...+|..+..++...|++++|..++++.+
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 25566666666666677766666665443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=4.3e-17 Score=163.16 Aligned_cols=228 Identities=13% Similarity=0.048 Sum_probs=152.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 007998 107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAG 183 (582)
Q Consensus 107 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~ 183 (582)
+...+..+...+...|++++|.+.++.+++.. +.+..++..+..+|.+.|++++|...|++.. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34456667777777777777777777777764 3356677777777777777777777777653 3356778888888
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCC-----------HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC-chhHHHHH
Q 007998 184 LAQGNLASEAVDLFKRMKMEGVFKPN-----------EVTVLGALAACGHLGAWKEGDKIHEYIREERLDM-NVVVCNAV 251 (582)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~pd-----------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 251 (582)
|...|++++|++.|+++.+.. |+ ...+..+...+...|++++|..+++++++..... +..++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN---PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC---ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 888888888888888877652 22 1223334666777777777777777777664321 46677777
Q ss_pred HHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCH
Q 007998 252 IDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLV 328 (582)
Q Consensus 252 i~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 328 (582)
...|.+.|++++|.+.|++.. .+.+..+|+.+...|...|++++|+..|+++.+. .|+ ..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 777777777777777777653 2445667777777777777777777777777664 333 55666777777777777
Q ss_pred HHHHHHHHHHhH
Q 007998 329 DDGVRLFNSMAN 340 (582)
Q Consensus 329 ~~a~~~~~~~~~ 340 (582)
++|...|+++.+
T Consensus 298 ~~A~~~~~~al~ 309 (365)
T 4eqf_A 298 REAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777766
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1.2e-16 Score=156.68 Aligned_cols=258 Identities=10% Similarity=-0.059 Sum_probs=179.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 255 (582)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+...|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34445555555555555555555555543 3445555555555555555555555555555543 22445555555566
Q ss_pred HhcCCHHHHHHHHhccc-C-CCCHHHHHHH--------------HH-HHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 007998 256 AKCGLLDKAFEVFDNIK-C-RKSLVTWNTM--------------VM-AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA 318 (582)
Q Consensus 256 ~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 318 (582)
.+.|++++|.+.|+++. . +.+...+..+ .. .+...|++++|+..++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 66666666666555443 1 1122222222 22 3667788889999998888753 3356778888
Q ss_pred HHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 007998 319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVE 396 (582)
Q Consensus 319 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 396 (582)
...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 888889999999999999888743 345677888889999999999999999876 3334 6888999999999999999
Q ss_pred HHHHHHHHHHHcCCC------------CchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998 397 MAEIASRKLVEMGSN------------NCGDFVLLSNLYAAYERWDDVGRVRKA 438 (582)
Q Consensus 397 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 438 (582)
+|...++++++..|. ++..+..++.+|...|++++|..++++
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999998 688999999999999999999998864
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=5.3e-15 Score=155.89 Aligned_cols=365 Identities=10% Similarity=0.029 Sum_probs=270.0
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 007998 71 PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL 150 (582)
Q Consensus 71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 150 (582)
.|...|..++. +.+.|++++|..+|+++++.. +-+...|...+..+.+.|+++.|+++|+.+++.. |+...|...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 48889999998 478999999999999999863 3356678899999999999999999999999874 4677777777
Q ss_pred H-HHHhcCCHHHHHH----HHhhcC------CCChhHHHHHHHHHHh---------CCChhHHHHHHHHHHHcCCCCCCH
Q 007998 151 D-VYAKVGEIVSAKK----VFDEMG------VRDIASWNALIAGLAQ---------GNLASEAVDLFKRMKMEGVFKPNE 210 (582)
Q Consensus 151 ~-~y~~~g~~~~A~~----~f~~m~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~pd~ 210 (582)
. .....|+.+.|.+ +|++.. ..+...|...+....+ .|++++|..+|++.+.... .+..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~-~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM-INIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC-TTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh-hhHH
Confidence 5 3345677777665 666541 2356788888877655 6889999999999987421 2212
Q ss_pred HHHHHHHHH---H----------hccCCcHHHHHHHHHHH------HcC---CCCc--------hhHHHHHHHHHHhc--
Q 007998 211 VTVLGALAA---C----------GHLGAWKEGDKIHEYIR------EER---LDMN--------VVVCNAVIDMYAKC-- 258 (582)
Q Consensus 211 ~t~~~ll~a---~----------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~y~~~-- 258 (582)
..|...... . ...+++..|..++..+. +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 333322221 1 13455677777766532 111 2333 24555555443332
Q ss_pred --CCH----HHHHHHHhccc--CCCCHHHHHHHHHHHHh-------CCChh-------HHHHHHHHHHhcCCCCC-HHHH
Q 007998 259 --GLL----DKAFEVFDNIK--CRKSLVTWNTMVMAFAV-------HGDGP-------RALELFEQMGRAGVKPD-DVSY 315 (582)
Q Consensus 259 --g~~----~~A~~~~~~~~--~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~-~~t~ 315 (582)
++. +.|..+|++.. .+.+...|..++..+.+ .|+.+ +|..+|++..+. +.|+ ...+
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHH
Confidence 232 36777887654 25578899999888876 79987 999999999863 3454 6788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhHcCCccC--hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HH
Q 007998 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPN--MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGA-CQ 390 (582)
Q Consensus 316 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~ 390 (582)
..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++. ...| +...|...... +.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 88888999999999999999999983 454 257888899999999999999999987 3333 23333332222 34
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
..|+.++|..+|+++++..|+++..+..++..+.+.|+.++|+.++++.....
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 68999999999999999999999999999999999999999999999998764
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.8e-15 Score=145.95 Aligned_cols=267 Identities=12% Similarity=-0.002 Sum_probs=208.0
Q ss_pred HHhcCCHHHHHHHHhhcCCCCh----hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHH
Q 007998 153 YAKVGEIVSAKKVFDEMGVRDI----ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228 (582)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~ 228 (582)
....|++..|+..++.....+. .....+.++|...|++++|+..++. . - +|+..++..+...+...++.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~-~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-S-APELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-S-CHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-C-ChhHHHHHHHHHHHcCCCcHHH
Confidence 4457888888888877655432 3445667888888888888876654 2 2 6777788888888888888999
Q ss_pred HHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC
Q 007998 229 GDKIHEYIREERLDM-NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG 307 (582)
Q Consensus 229 a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 307 (582)
|.+.+++++..+..| +...+..+...|.+.|++++|.+.|++ +.+...+..++..|.+.|++++|++.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 999998888776444 566777788999999999999999998 467889999999999999999999999999886
Q ss_pred CCCCHHHH---HHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 007998 308 VKPDDVSY---LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLW 382 (582)
Q Consensus 308 ~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 382 (582)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.+++. ...| +..+|
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4664321 12334444568999999999999984 2457888999999999999999999999986 4445 78889
Q ss_pred HHHHHHHHhcCChHH-HHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHH
Q 007998 383 QTLLGACQLYGDVEM-AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434 (582)
Q Consensus 383 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 434 (582)
..++..+...|+.++ +.++++++++.+|+++.+. +...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 999999999999875 6789999999999887543 34455555555544
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=7.9e-18 Score=166.39 Aligned_cols=280 Identities=11% Similarity=0.101 Sum_probs=93.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHH
Q 007998 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR 199 (582)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 199 (582)
..|++++|.+.++++ +++.+|..|+.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 334556666655555 12235666666666666666666666442 4455666666666666666666665554
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHH
Q 007998 200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279 (582)
Q Consensus 200 m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 279 (582)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+. .
T Consensus 87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------n 150 (449)
T 1b89_A 87 ARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------N 150 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT------C
T ss_pred HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh------h
Confidence 4442 3345556666666666666666655553 2455566666666666666666666666553 5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhh
Q 007998 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359 (582)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 359 (582)
|..++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQD 219 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHH
Confidence 666666666666666666666665 1456666666666666666666433322 12222333346666666
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCC-----CCchhHHHHHHHHHhcCCch
Q 007998 360 AGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYG--DVEMAEIASRKLVEMGS-----NNCGDFVLLSNLYAAYERWD 430 (582)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~ 430 (582)
.|++++|..+++.. +.++ ....|.-|.-+|.+.+ +..+.++.|..-+...| .++..|..+...|...++|+
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 66666666666543 4333 4555555555555442 33333333332222223 34556666666666667766
Q ss_pred HHHH
Q 007998 431 DVGR 434 (582)
Q Consensus 431 ~a~~ 434 (582)
.|..
T Consensus 300 ~A~~ 303 (449)
T 1b89_A 300 NAII 303 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.9e-15 Score=156.81 Aligned_cols=366 Identities=11% Similarity=-0.047 Sum_probs=241.2
Q ss_pred cchhchHHHHHhcCCC-CCHHHHHHHHhcC------------CCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhC----
Q 007998 40 FPVRSKIIEFYALSPL-NELAYAHALFRQI------------NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG---- 102 (582)
Q Consensus 40 ~~~~~~~~~li~~y~~-g~~~~A~~~f~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 102 (582)
....+.||.|...|.. |+.++|.+.|++. .....++|+.+...|...|++++|...|++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 3333446888888888 9999999998763 1235678999999999999999999999887642
Q ss_pred -C-CCC-ChhHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCchHHHHHHHHH---HHhcCCHHHHHHHHhhc---CC
Q 007998 103 -S-HRS-DALTCSFALKACAR--VLALFETLQIHSHVLRHGFLADALLGTTLLDV---YAKVGEIVSAKKVFDEM---GV 171 (582)
Q Consensus 103 -g-~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---y~~~g~~~~A~~~f~~m---~~ 171 (582)
+ ..+ ...++.....++.. .+++++|++.|+.+++..+ .++..+..+..+ +...++.++|.+.|++. ..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 112 23455555555544 3578999999999998863 355556555555 44567778888887764 34
Q ss_pred CChhHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhH
Q 007998 172 RDIASWNALIAGLAQ----GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV 247 (582)
Q Consensus 172 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 247 (582)
.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...+...|++++|...+.++.+..+. +..+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 466677766655544 467889999999988876 677889999999999999999999999999987533 5677
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 007998 248 CNAVIDMYAKC-------------------GLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306 (582)
Q Consensus 248 ~~~li~~y~~~-------------------g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 306 (582)
+..+...|... +..+.|...|++.. .+.+..+|..+...|...|++++|+..|++..+.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 77777766532 23566777776543 2556778999999999999999999999999886
Q ss_pred CCCCCHH--HHHHHHH-HHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 007998 307 GVKPDDV--SYLAALC-ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVL 381 (582)
Q Consensus 307 g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 381 (582)
...|... .+..+.. ...+.|+.++|...|++..+ +.|+...... ....+.++++.. ...| +..+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHH
Confidence 4433321 2222322 34578999999999999987 3354332221 223334444432 2233 6778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998 382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420 (582)
Q Consensus 382 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 420 (582)
|..|...+...|++++|++.|+++++++|.+|.+...++
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999999999998877665543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=2.1e-15 Score=147.85 Aligned_cols=255 Identities=11% Similarity=-0.024 Sum_probs=138.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCC
Q 007998 113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNL 189 (582)
Q Consensus 113 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~ 189 (582)
.+...+...|++++|.++++.+++.. +.+...+..+...|.+.|++++|.+.|++.. ..+..+|..+...|...|+
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 33333444444444444444444432 1233344444444444444444444444432 2234455555555555555
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHH--------------HH-HHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 190 ASEAVDLFKRMKMEGVFKPNEVTVLGA--------------LA-ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254 (582)
Q Consensus 190 ~~~A~~~~~~m~~~g~~~pd~~t~~~l--------------l~-a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 254 (582)
+++|++.|+++.... +.+...+..+ .. .+...|++++|..+++++.+... .+...+..+...
T Consensus 105 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 181 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVL 181 (327)
T ss_dssp HHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 566665555555442 1122222211 12 25566677777777777766542 256666777777
Q ss_pred HHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 007998 255 YAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332 (582)
Q Consensus 255 y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 332 (582)
|.+.|++++|.+.|++.. .+.+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 777777777777776543 24456667777777777777777777777766642 223456666666777777777777
Q ss_pred HHHHHHhHcCCcc-----------ChhhHHhhhhHHhhcCCHHHHHHHHHh
Q 007998 333 RLFNSMANCGVKP-----------NMKHYGSVVDLLGRAGRLQEACDIVKS 372 (582)
Q Consensus 333 ~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 372 (582)
..++++.+..... +...+..+..+|.+.|++++|..++++
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777666521111 244555555556666666666555543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=7.7e-16 Score=148.56 Aligned_cols=249 Identities=11% Similarity=0.014 Sum_probs=203.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 007998 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNE--VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258 (582)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~m~~~g~~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 258 (582)
|+-....|+++.|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|.+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 34456789999999999876543 4443 3556778899999999999876644 2456778888999999999
Q ss_pred CCHHHHHHHHhccc-C--CC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007998 259 GLLDKAFEVFDNIK-C--RK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334 (582)
Q Consensus 259 g~~~~A~~~~~~~~-~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 334 (582)
|+.++|.+.++++. . .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999863 1 24 566778888999999999999999987 45677888899999999999999999
Q ss_pred HHHHhHcCCccChhh---HHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998 335 FNSMANCGVKPNMKH---YGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG 409 (582)
Q Consensus 335 ~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 409 (582)
|+++.+.. |+... ...++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++.+
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999843 54321 123445555669999999999987 223488999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCchH-HHHHHHHHHhCCC
Q 007998 410 SNNCGDFVLLSNLYAAYERWDD-VGRVRKAMKNRDV 444 (582)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~~ 444 (582)
|+++.++..++.++...|++++ +.++++++.+...
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999986 5788888876543
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=6.9e-14 Score=153.61 Aligned_cols=368 Identities=13% Similarity=0.052 Sum_probs=283.3
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC-CC-----ChhHHHHHHHHHHcCCCchH
Q 007998 19 HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN-AP-----STNDFNAVLRGLAHSSKPTN 91 (582)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~-~~-----~~~~~~~li~~~~~~g~~~~ 91 (582)
-..-|++..+.+.+.++...+|.-. ...+..|.. |.+.+|..+++++. .| +...-|.++....+. +..+
T Consensus 964 n~~RR~Lidqv~a~aL~e~~~PeeV---s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~R 1039 (1630)
T 1xi4_A 964 NPYRRPLIDQVVQTALSETQDPEEV---SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTR 1039 (1630)
T ss_pred cHHHHHHHHHHHHhhcccccCHHHh---HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Chhh
Confidence 4566777777777766543224433 477788888 99999999998875 22 234456677666665 5566
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007998 92 AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV 171 (582)
Q Consensus 92 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 171 (582)
..+...+... ....-+...|...|.+++|.++|++.. ......+.+ +-..+++++|.++.++..
T Consensus 1040 v~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn- 1103 (1630)
T 1xi4_A 1040 VMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN- 1103 (1630)
T ss_pred HHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC-
Confidence 6666665532 223446777888999999999998852 122222333 227889999999998774
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998 172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251 (582)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 251 (582)
+..+|..+..++...|++++|++.|.+. .|...|..++.+|.+.|+++++.+++....+.. ++..+.+.+
T Consensus 1104 -~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1104 -EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 4678999999999999999999999553 467788999999999999999999999887764 344445569
Q ss_pred HHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 007998 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331 (582)
Q Consensus 252 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 331 (582)
+.+|++.+++++..... . .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|
T Consensus 1174 afaYAKl~rleele~fI---~-~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI---N-GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHHHHhhcCHHHHHHHH---h-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 99999999998644443 4 667778888999999999999999999984 3789999999999999999
Q ss_pred HHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998 332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN 411 (582)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 411 (582)
.+.+++. .+..+|..+..++...|++..|......+ ..++..+..++..|...|.+++|+.+++..+.++|.
T Consensus 1241 IEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera 1312 (1630)
T 1xi4_A 1241 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERA 1312 (1630)
T ss_pred HHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh
Confidence 9999877 34578888888899999999999887754 345666779999999999999999999999999998
Q ss_pred CchhHHHHHHHHHhc--CCchHHHHHHH
Q 007998 412 NCGDFVLLSNLYAAY--ERWDDVGRVRK 437 (582)
Q Consensus 412 ~~~~~~~l~~~~~~~--g~~~~a~~~~~ 437 (582)
....|..|+.+|++. ++..++.+.|.
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888998888888765 45555555554
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=6.5e-14 Score=153.78 Aligned_cols=377 Identities=9% Similarity=0.062 Sum_probs=285.6
Q ss_pred hHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC---CCHHHHHHHHhcCCCCChhHHHHHH
Q 007998 4 LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL---NELAYAHALFRQINAPSTNDFNAVL 80 (582)
Q Consensus 4 ~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~---g~~~~A~~~f~~~~~~~~~~~~~li 80 (582)
.+...+++...+ .+..+.++.+.++..+-....++.+. |.|+..-.+ ++..+...-++. -+ ...+.
T Consensus 988 Vs~~vKaf~~ag--lp~EaieLLEKivl~~s~fs~n~~Lq---nlLi~tAIkaD~~Rv~eyI~kLd~---~d---~~eIA 1056 (1630)
T 1xi4_A 988 VSVTVKAFMTAD--LPNELIELLEKIVLDNSVFSEHRNLQ---NLLILTAIKADRTRVMEYINRLDN---YD---APDIA 1056 (1630)
T ss_pred hHHHHHHHHhCC--CHHHHHHHHHHHHcCCCcccccHHHH---HHHHHHHHHhChhhHHHHHHHhhh---cc---HHHHH
Confidence 455667777633 58889999999884322111125666 566655544 555555544442 22 45577
Q ss_pred HHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 007998 81 RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160 (582)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 160 (582)
..+...|.+++|..+|++.. . .....+.++. ..+++++|.++.+++ .++.+|..+..++.+.|+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 88889999999999999962 1 2222333333 668899999988765 35788999999999999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC
Q 007998 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240 (582)
Q Consensus 161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 240 (582)
+|.+.|.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.++.+|++.+++++...+. +
T Consensus 1123 EAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 999999774 678889999999999999999999999877653 33333445889999999888644442 2
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320 (582)
Q Consensus 241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (582)
.++...+..+.+.|...|++++|..+|.... .|..+...|.+.|++++|++.+++. .+..+|..+-.
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 3466677789999999999999999999864 8999999999999999999999986 35689999999
Q ss_pred HHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChH
Q 007998 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY--GDVE 396 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~ 396 (582)
+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.. +.+| ....|.-|...+.+. ++..
T Consensus 1259 acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 99999999998886653 3455667778999999999999999999875 5555 456776666666654 3556
Q ss_pred HHHHHHHHHHHcCC-----CCchhHHHHHHHHHhcCCchHHHH
Q 007998 397 MAEIASRKLVEMGS-----NNCGDFVLLSNLYAAYERWDDVGR 434 (582)
Q Consensus 397 ~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 434 (582)
++.+.|..-....| .+...|.-+...|.+.|+|+.|..
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66666665555444 466788899999999999999984
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=174.57 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=104.0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccc------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH
Q 007998 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK------CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS 314 (582)
Q Consensus 241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 314 (582)
...-..+||+||++|+++|++++|.++|++|. ..||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33346688888888888888888888887653 468888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHH
Q 007998 315 YLAALCACNHAGL-VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369 (582)
Q Consensus 315 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 369 (582)
|+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++....+.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 8888888888887 477888888888888888888888888877766544444444
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=9.7e-17 Score=170.75 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=126.9
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH
Q 007998 139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMG-------VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211 (582)
Q Consensus 139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~ 211 (582)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+ .||.+
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-TPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCcHH
Confidence 34456789999999999999999999997763 68999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhccCCc-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCC----CCHHHHHHHHHH
Q 007998 212 TVLGALAACGHLGAW-KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR----KSLVTWNTMVMA 286 (582)
Q Consensus 212 t~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~~li~~ 286 (582)
||+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ |.+.+-+.|...
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 999999999999985 789999999999999999999999998888776666666665555411 123333445555
Q ss_pred HHhCC
Q 007998 287 FAVHG 291 (582)
Q Consensus 287 ~~~~g 291 (582)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.3e-14 Score=134.11 Aligned_cols=220 Identities=9% Similarity=0.004 Sum_probs=165.2
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-----CCCC----HHHHH
Q 007998 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-----CRKS----LVTWN 281 (582)
Q Consensus 211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~----~~~~~ 281 (582)
..+..+...+...|++++|..+++++++.. .+...+..+...|...|++++|.+.|++.. ..++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 455556666666667777777776666665 456667777777777777777777776543 1112 46777
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcC
Q 007998 282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361 (582)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 361 (582)
.+...|...|++++|+..|++.... .|+.. .+...|++++|...++.+.... +.+...+..+...|...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 7888888888888888888888774 45532 3455677888888888887732 234567777888888889
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998 362 RLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439 (582)
Q Consensus 362 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 439 (582)
++++|.+.+++. ...| +..+|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999998888876 2233 67888889999999999999999999999999999999999999999999999999999887
Q ss_pred HhC
Q 007998 440 KNR 442 (582)
Q Consensus 440 ~~~ 442 (582)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=3.6e-14 Score=130.60 Aligned_cols=195 Identities=11% Similarity=-0.003 Sum_probs=146.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHH
Q 007998 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAA 318 (582)
Q Consensus 242 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 318 (582)
+++...+..+...+.+.|++++|...|++.. .+.+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 3456677777788888888888888887653 2446677888888888888888888888888774 343 4567777
Q ss_pred HHHHHcC-----------CCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 007998 319 LCACNHA-----------GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLL 386 (582)
Q Consensus 319 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 386 (582)
..++... |++++|...|++..+.. +-+...+..+..+|...|++++|++.|++. ....+...|..+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 7777777 99999999999988843 234677888888999999999999999876 1116888999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998 387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM 439 (582)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 439 (582)
..+...|++++|...++++++.+|+++..+..++.++...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=6.3e-14 Score=132.15 Aligned_cols=234 Identities=11% Similarity=0.001 Sum_probs=159.9
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC--Cc----hhHH
Q 007998 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD--MN----VVVC 248 (582)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 248 (582)
..|..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|...+..+++.... ++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 345566666666666666666666666553 44556666666666666666666666666553211 11 4666
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCC
Q 007998 249 NAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAG 326 (582)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 326 (582)
..+...|.+.|++++|...|++.. ..|+. ..+...|++++|+..++++... .|+ ...+..+...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence 677777777777777777777654 23332 3355566777888888777763 343 346667777777888
Q ss_pred CHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007998 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRK 404 (582)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 404 (582)
++++|...++++.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...+++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888888888887732 235667777888888888888888888766 3334 578888889999999999999999999
Q ss_pred HHHcC------CCCchhHHHHHH
Q 007998 405 LVEMG------SNNCGDFVLLSN 421 (582)
Q Consensus 405 ~~~~~------p~~~~~~~~l~~ 421 (582)
+++.. |.+...+..+..
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhChhhcCCCchHHHHHHHHH
Confidence 99988 766655555543
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=8e-14 Score=132.86 Aligned_cols=249 Identities=9% Similarity=-0.029 Sum_probs=131.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHH
Q 007998 146 GTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN--EVTVLGALAAC 220 (582)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd--~~t~~~ll~a~ 220 (582)
+......|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++..+.+. .|+ ..+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN-ATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-TTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHH
Confidence 3444555666666666666666542 12344566666666666666666666666655321 111 22355555556
Q ss_pred hccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHH
Q 007998 221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALE 298 (582)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 298 (582)
...|++++|...++.+.+... .+..++..+...|.+.|++++|.+.|++.. .+.+...|..+...+...+++++|+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555432 234555555556666666666666665543 12234444444412222335555555
Q ss_pred HHHHHHhcCCCCC-HHHHHHHHHHHHcCCC---HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCC
Q 007998 299 LFEQMGRAGVKPD-DVSYLAALCACNHAGL---VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS 374 (582)
Q Consensus 299 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 374 (582)
.|+++.+. .|+ ...+..+..++...|+ +++|...++++.+ +....+
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----------------------------~~~~~~ 213 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE----------------------------VCAPGG 213 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH----------------------------HHGGGG
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH----------------------------HHhccc
Confidence 55555543 222 2333333333333333 3333333333332 111111
Q ss_pred CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 007998 375 MG---TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426 (582)
Q Consensus 375 ~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 426 (582)
.. ....+|..+...|...|++++|...++++++++|+++.+...+.......
T Consensus 214 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 214 AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 00 01246777888889999999999999999999999988777666555443
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=6.1e-14 Score=133.77 Aligned_cols=243 Identities=11% Similarity=-0.031 Sum_probs=182.8
Q ss_pred hCCChhHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007998 186 QGNLASEAVDLFKRMKMEGVF--KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263 (582)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~--~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 263 (582)
..|++++|++.|+++.+.... +.+..++..+..++...|++++|...++++++... .+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888775310 11355677778888888888888888888887753 367788888888888889999
Q ss_pred HHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHc
Q 007998 264 AFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341 (582)
Q Consensus 264 A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 341 (582)
|.+.|++.. .+.+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888888764 2456788888999999999999999999998874 455554444555566779999999999888773
Q ss_pred CCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD-----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 342 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
. +++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++...
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 2 2333334 3677788888889999998876 33332 5788899999999999999999999999999977544
Q ss_pred HHHHHHHHHhcCCchHHHHHH
Q 007998 416 FVLLSNLYAAYERWDDVGRVR 436 (582)
Q Consensus 416 ~~~l~~~~~~~g~~~~a~~~~ 436 (582)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66777888888887765
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=2.2e-13 Score=135.93 Aligned_cols=247 Identities=12% Similarity=0.026 Sum_probs=193.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC-cHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA-WKEGDKIHEYIREERLDMNVVVCNAVI 252 (582)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 252 (582)
...|+.+...+.+.|++++|++.|++.+... +-+...|..+..++...|+ +++|...++++++.... +...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 4567788888888888888888888888775 5567788888888888886 88888888888887543 677888888
Q ss_pred HHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-CCCHH
Q 007998 253 DMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH-AGLVD 329 (582)
Q Consensus 253 ~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~ 329 (582)
.+|.+.|++++|+..|+++. .+.+...|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 88888888888888888664 35677888888888888899999999999888752 2245678888888887 55546
Q ss_pred HH-----HHHHHHHhHcCCccChhhHHhhhhHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--------
Q 007998 330 DG-----VRLFNSMANCGVKPNMKHYGSVVDLLGRAG--RLQEACDIVKSVSMGT-DMVLWQTLLGACQLYG-------- 393 (582)
Q Consensus 330 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g-------- 393 (582)
+| ...|++.++.. +-+...|..+..+|...| ++++|.+.++++...| +...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 66 47788887732 234567777888888877 6889998888774445 5778888888887764
Q ss_pred -ChHHHHHHHHHH-HHcCCCCchhHHHHHHHHHh
Q 007998 394 -DVEMAEIASRKL-VEMGSNNCGDFVLLSNLYAA 425 (582)
Q Consensus 394 -~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 425 (582)
.+++|.++++++ .+.+|.....|..++..+..
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 89999888888888776654
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=2.9e-13 Score=124.51 Aligned_cols=195 Identities=13% Similarity=0.033 Sum_probs=111.7
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI 252 (582)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 252 (582)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++.++... .+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 34455555666666666666666666665553 44555666666666666666666666666665542 2455555566
Q ss_pred HHHHhc-----------CCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007998 253 DMYAKC-----------GLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319 (582)
Q Consensus 253 ~~y~~~-----------g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 319 (582)
.+|.+. |++++|...|++.. .+.+...|..+...|...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 666665 67777777766543 23455666667777777777777777777776654 5556666666
Q ss_pred HHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 320 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 373 (582)
.++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|.+.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 67777777777777777766632 224455566666666677777776666554
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.3e-12 Score=122.79 Aligned_cols=207 Identities=9% Similarity=-0.051 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253 (582)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 253 (582)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence 3455555566666666666666666655543 3344444444444444445544444444444432
Q ss_pred HHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHH
Q 007998 254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGV 332 (582)
Q Consensus 254 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 332 (582)
+.+...|..+...|...|++++|++.|+++...+..|+. ..+..+...+...|++++|.
T Consensus 102 --------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 102 --------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 223444444555555555555555555555442223332 34555555566666666666
Q ss_pred HHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410 (582)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 410 (582)
..++++.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|++++|.+.++++.+..|
T Consensus 162 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 162 EYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 6666665522 223455566666666677777777666654 222 3566677777777778888888888888888877
Q ss_pred CCchhH
Q 007998 411 NNCGDF 416 (582)
Q Consensus 411 ~~~~~~ 416 (582)
+++...
T Consensus 241 ~~~~~~ 246 (252)
T 2ho1_A 241 GSLEYQ 246 (252)
T ss_dssp TSHHHH
T ss_pred CCHHHH
Confidence 765443
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=3e-12 Score=122.15 Aligned_cols=224 Identities=10% Similarity=-0.031 Sum_probs=119.1
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHcCCCCchhHH
Q 007998 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH----LGAWKEGDKIHEYIREERLDMNVVVC 248 (582)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 248 (582)
+..++..+...|...|++++|++.|++..+.+ +..++..+...+.. .+++++|...+++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44556666666666666666666666665532 23445555555555 666666666666665554 44555
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhcccCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998 249 NAVIDMYAK----CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV----HGDGPRALELFEQMGRAGVKPDDVSYLAALC 320 (582)
Q Consensus 249 ~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (582)
..+..+|.. .+++++|.+.|++.....+..++..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555555 55566666555544312344555555555555 555555555555555433 2333444444
Q ss_pred HHHc----CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 007998 321 ACNH----AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL----Y 392 (582)
Q Consensus 321 a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~ 392 (582)
.+.. .+++++|...|++..+. .+...+..+...+.. .
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~-----------------------------------~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL-----------------------------------KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHHHHHHTCSSC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-----------------------------------CCHHHHHHHHHHHHcCCCCC
Confidence 4444 45555555555554442 233444444444544 5
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 007998 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA----YERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 443 (582)
+++++|...++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.+
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555555555555555543 3445555555555 555555555555554433
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=8.7e-13 Score=124.08 Aligned_cols=199 Identities=9% Similarity=-0.038 Sum_probs=173.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007998 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC 322 (582)
Q Consensus 245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 322 (582)
...+..+...|...|++++|.+.|+++. .+.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 5677888889999999999999998764 35578889999999999999999999999998753 33567888889999
Q ss_pred HcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007998 323 NHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAE 399 (582)
Q Consensus 323 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 399 (582)
...|++++|..+++++.+.+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998733344 4577888999999999999999999876 3334 6888999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
..++++++..|.++..+..++.+|...|++++|.+.++++.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999987543
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=3.3e-12 Score=121.88 Aligned_cols=226 Identities=12% Similarity=-0.030 Sum_probs=184.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 007998 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-DIASWNALIAGLAQ----GNLASEAVDLFKRMKMEGVFKPNEVTVLGA 216 (582)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~pd~~t~~~l 216 (582)
+...+..+...|.+.|++++|...|++..++ +..++..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHHH
Confidence 5677888999999999999999999987654 67789999999999 999999999999998865 67788888
Q ss_pred HHHHhc----cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcccCCCCHHHHHHHHHHHH
Q 007998 217 LAACGH----LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK----CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA 288 (582)
Q Consensus 217 l~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~ 288 (582)
...+.. .+++++|...+++..+.+ +...+..+..+|.+ .+++++|.+.|++.....+...+..+...|.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 899988 999999999999999875 77888999999999 9999999999997652447788889999999
Q ss_pred h----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhc
Q 007998 289 V----HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH----AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA 360 (582)
Q Consensus 289 ~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 360 (582)
. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+.+
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------ 216 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE------------------ 216 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT------------------
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC------------------
Confidence 8 999999999999998864 45666667777777 777777777777776532
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCC
Q 007998 361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 361 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 412 (582)
+...+..+...+.. .+++++|.+.++++.+.+|++
T Consensus 217 -----------------~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 217 -----------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp -----------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred -----------------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 12334444555555 667777777777777777643
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=2.9e-13 Score=126.37 Aligned_cols=173 Identities=12% Similarity=0.045 Sum_probs=90.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 007998 248 CNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325 (582)
Q Consensus 248 ~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 325 (582)
+..+...|.+.|++++|.+.|++.. .+.+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 3333334444444444444443322 12234444444445555555555555555544431 22334444455555555
Q ss_pred CCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007998 326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASR 403 (582)
Q Consensus 326 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~ 403 (582)
|++++|..+++++.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++
T Consensus 139 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 55555555555555421 123445555556666666666666666554 112 246667777777777777777777777
Q ss_pred HHHHcCCCCchhHHHHHHH
Q 007998 404 KLVEMGSNNCGDFVLLSNL 422 (582)
Q Consensus 404 ~~~~~~p~~~~~~~~l~~~ 422 (582)
++++.+|+++..+..+..+
T Consensus 218 ~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 218 KAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHCTTCHHHHHHHTC-
T ss_pred HHHccCcchHHHHHHHHHH
Confidence 7777777776666555443
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=1e-12 Score=134.99 Aligned_cols=299 Identities=12% Similarity=0.046 Sum_probs=161.4
Q ss_pred cChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCH---HHHHHHHhcCCCCChhHHHHHHHHHHcCC-----
Q 007998 17 VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NEL---AYAHALFRQINAPSTNDFNAVLRGLAHSS----- 87 (582)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g----- 87 (582)
++.+.|.+.+..+.+.|- +... ..|..+|.. |+. ++|...|++..+.+...+..|...+...+
T Consensus 17 g~~~~A~~~~~~aa~~g~-----~~A~---~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELGY-----SEAQ---VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHTC-----CTGG---GTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred CCHHHHHHHHHHHHHCCC-----HHHH---HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 357778888888777652 2222 345556655 666 78888888776556667777777555554
Q ss_pred CchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcC----CHH
Q 007998 88 KPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE---TLQIHSHVLRHGFLADALLGTTLLDVYAKVG----EIV 160 (582)
Q Consensus 88 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~ 160 (582)
++++|+..|++..+.|.. ..+..+...+...+..+. +.+.+......| ++.....|..+|...+ +.+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 567888888888776532 255555666655443332 344444444444 3445566677777766 444
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc----CCcHHHHHHH
Q 007998 161 SAKKVFDEMGVRDIASWNALIAGLAQGN---LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL----GAWKEGDKIH 233 (582)
Q Consensus 161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~----~~~~~a~~~~ 233 (582)
.+..+++.....+..++..|...|.+.| ++++|++.|++..+.| +++...+..+...|... ++.++|...|
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 5555666666666667777777777777 7778888888777777 56666656666666544 5667777777
Q ss_pred HHHHHcCCCCchhHHHHHHHH-H--HhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHh
Q 007998 234 EYIREERLDMNVVVCNAVIDM-Y--AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG-----DGPRALELFEQMGR 305 (582)
Q Consensus 234 ~~~~~~~~~~~~~~~~~li~~-y--~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~ 305 (582)
+... . -+...+..|..+ | ...+++++|.+.|++.....+...+..|...|. .| ++++|+..|++..
T Consensus 241 ~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 241 EKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp HHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred HHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 6665 2 244555555555 3 345666666666665442335555555655555 33 5666666666554
Q ss_pred cCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHhH
Q 007998 306 AGVKPDDVSYLAALCACNH----AGLVDDGVRLFNSMAN 340 (582)
Q Consensus 306 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~ 340 (582)
.| +......+...|.. ..++++|...|++..+
T Consensus 315 ~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 315 GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 22 33334444444433 2255555555555554
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=2.7e-12 Score=118.09 Aligned_cols=201 Identities=11% Similarity=-0.034 Sum_probs=101.0
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhC-C
Q 007998 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVH-G 291 (582)
Q Consensus 215 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~-g 291 (582)
.+...+...|++++|...++.+++.. +.+...+..+...|...|++++|.+.|++.. .+.+..+|..+...|... |
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 91 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN 91 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC
Confidence 33333333344444444333333332 1123344444444444444444444444332 123444555555555555 5
Q ss_pred ChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHH
Q 007998 292 DGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370 (582)
Q Consensus 292 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 370 (582)
++++|+..|+++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 92 RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554222333 2345555555566666666666666655521 123445555556666666666666666
Q ss_pred HhC-CCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998 371 KSV-SMG--TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417 (582)
Q Consensus 371 ~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 417 (582)
+++ ... .+...|..+...+...|+.+.+...++.+.+..|+++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 171 KKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 554 111 24455555555666666677776666666666666654443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=1.6e-12 Score=119.56 Aligned_cols=200 Identities=11% Similarity=-0.029 Sum_probs=174.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320 (582)
Q Consensus 243 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (582)
.+...+..+...|...|++++|.+.|++.. .+.+...|..+...|...|++++|+..|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 356778889999999999999999999764 35578899999999999999999999999998753 335678888999
Q ss_pred HHHcC-CCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 007998 321 ACNHA-GLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVE 396 (582)
Q Consensus 321 a~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 396 (582)
.+... |++++|...++++.+.+..|+ ...+..+...|...|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 99999 999999999999998323343 577888999999999999999999876 3334 6888999999999999999
Q ss_pred HHHHHHHHHHHcCC-CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 397 MAEIASRKLVEMGS-NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 397 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
+|...++++++..| .++..+..+...+...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999999 999999999999999999999999999887644
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=6.2e-13 Score=136.71 Aligned_cols=344 Identities=10% Similarity=-0.014 Sum_probs=195.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 007998 79 VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL---FETLQIHSHVLRHGFLADALLGTTLLDVYAK 155 (582)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 155 (582)
+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|.+.++...+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4556667778888888888877655 223334444445556666 7777777777644 34445556554554
Q ss_pred cC-----CHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCCChhH---HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCc
Q 007998 156 VG-----EIVSAKKVFDEMGVR-DIASWNALIAGLAQGNLASE---AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW 226 (582)
Q Consensus 156 ~g-----~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~ 226 (582)
.| +.++|...|++...+ +..++..|...|...+..++ +.+.+.+....| ++.....+...+...+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCc
Confidence 44 667777777766433 44567777777776665433 444444444444 233444555566666654
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhccc--CCCCHHHHHHHHHHHHhC----CChhHHH
Q 007998 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG---LLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVH----GDGPRAL 297 (582)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~----g~~~~A~ 297 (582)
+++......+.+.-...+...+..|..+|.+.| +.++|.+.|++.. ..++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 444444333333222233446777777777777 7777777777553 234455556666666544 5777888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHH-H--HcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcC-----CHHHHHHH
Q 007998 298 ELFEQMGRAGVKPDDVSYLAALCA-C--NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG-----RLQEACDI 369 (582)
Q Consensus 298 ~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~ 369 (582)
..|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|..+|. .| ++++|.+.
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 8887776 33 23344444444 3 45778888888888777654 4455555666665 44 78888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHh
Q 007998 370 VKSVSMGTDMVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA----YERWDDVGRVRKAMKN 441 (582)
Q Consensus 370 ~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 441 (582)
|++.- ..+...+..|...|.. ..++++|...|++..+.+ ++.....|+.+|.. ..+.++|...+++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 87776 4567777777666655 337788888888776644 45677777777764 3467777777777776
Q ss_pred CCC
Q 007998 442 RDV 444 (582)
Q Consensus 442 ~~~ 444 (582)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 664
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=5.8e-13 Score=124.38 Aligned_cols=199 Identities=12% Similarity=0.090 Sum_probs=156.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320 (582)
Q Consensus 243 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (582)
.....+..+...|.+.|++++|...|++.. .+.+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 345677778888999999999999998764 24578889999999999999999999999998753 335678888999
Q ss_pred HHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007998 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMA 398 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 398 (582)
.+...|++++|..+++++.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999843 346678888999999999999999999886 3233 688899999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
...++++++..|.++..+..++.+|...|++++|...+++..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999988754
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=2e-12 Score=123.17 Aligned_cols=239 Identities=13% Similarity=-0.055 Sum_probs=139.8
Q ss_pred CCCchHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 007998 86 SSKPTNAVLWYRQMLRGSHRS---DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA 162 (582)
Q Consensus 86 ~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 162 (582)
.|++++|+..|+++.+..... +..++..+...+...|++++|.+.++.+++.. +.+..++..+..+|.+.|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 455666666666666542211 23455566666666677777777777666654 23556666677777777777777
Q ss_pred HHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc
Q 007998 163 KKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239 (582)
Q Consensus 163 ~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 239 (582)
.+.|++.. ..+..+|..+...|.+.|++++|++.|+++.+.. |+.......+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77776653 2356677777777777788888888887777653 33333333444445567777777777666665
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCC-------HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH
Q 007998 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS-------LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312 (582)
Q Consensus 240 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 312 (582)
. +++...+ .++..+...++.++|.+.++... ..+ ...|..+...|...|++++|+..|++.... .|+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADA-TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHC-CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHh-cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 3 2233333 35666666677777777776654 221 345666666666666666666666666653 3422
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Q 007998 313 VSYLAALCACNHAGLVDDGVRLF 335 (582)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~~~ 335 (582)
. .....++...|++++|.+.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 1 11122344445555554443
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=2.5e-13 Score=137.97 Aligned_cols=262 Identities=10% Similarity=-0.013 Sum_probs=159.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCCcHHHHHHHHHHHHc----CC-CCchhHHH
Q 007998 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE----VTVLGALAACGHLGAWKEGDKIHEYIREE----RL-DMNVVVCN 249 (582)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 249 (582)
.+...+...|++++|+..|++..+.. +.+. ..+..+...+...|++++|...+++.++. +. ......+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34445555555555555555555543 2222 24455555555556666665555555432 10 11234555
Q ss_pred HHHHHHHhcCCHHHHHHHHhccc-------C-CCCHHHHHHHHHHHHhCCC-----------------hhHHHHHHHHHH
Q 007998 250 AVIDMYAKCGLLDKAFEVFDNIK-------C-RKSLVTWNTMVMAFAVHGD-----------------GPRALELFEQMG 304 (582)
Q Consensus 250 ~li~~y~~~g~~~~A~~~~~~~~-------~-~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~ 304 (582)
.+...|...|++++|...|++.. . .....+|..+...|...|+ +++|+..+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 56666666666666666665432 0 1123356666666666666 666666666654
Q ss_pred hc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC-
Q 007998 305 RA----GVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV- 373 (582)
Q Consensus 305 ~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~- 373 (582)
+. +-.|. ..++..+...+...|++++|...+++..+ ..-.++ ...+..+...|...|++++|.+.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 31 11111 23566666677777777777777777765 111111 235666777788888888888777654
Q ss_pred ---CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------CchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 374 ---SMGT----DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN------NCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 374 ---~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
+... ...++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|...+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1111 2456777888888889999999999888876432 23477888999999999999999988776
Q ss_pred hC
Q 007998 441 NR 442 (582)
Q Consensus 441 ~~ 442 (582)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=4.6e-12 Score=120.53 Aligned_cols=229 Identities=8% Similarity=-0.108 Sum_probs=186.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHH
Q 007998 108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RD----IASWNALI 181 (582)
Q Consensus 108 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li 181 (582)
...+......+...|++++|.+.++.+++.. +.+..++..+...|.+.|++++|...|++... ++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456667778889999999999999999875 33566888899999999999999999988743 22 33589999
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHH-HHHHhcCC
Q 007998 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI-DMYAKCGL 260 (582)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~ 260 (582)
..|...|++++|++.|++..+.. +.+..++..+...+...|++++|...+++.++.. +.+...+..+. ..|. .++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~ 157 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKE 157 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999876 5677899999999999999999999999988773 34677777787 5554 569
Q ss_pred HHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHcCCCH
Q 007998 261 LDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGD---GPRALELFEQMGRAG-VKPD------DVSYLAALCACNHAGLV 328 (582)
Q Consensus 261 ~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~t~~~ll~a~~~~g~~ 328 (582)
+++|.+.|++.. .+.+...|..+...+...|+ +++|+..|++..+.. -.|+ ...|..+...+...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999999765 24567888889999988888 888999999987631 1233 14677777888888999
Q ss_pred HHHHHHHHHHhHc
Q 007998 329 DDGVRLFNSMANC 341 (582)
Q Consensus 329 ~~a~~~~~~~~~~ 341 (582)
++|...|+++.+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888873
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=9e-13 Score=133.22 Aligned_cols=265 Identities=12% Similarity=0.025 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCCcHHHHHHHHHHHHc----CCCC-ch
Q 007998 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN----EVTVLGALAACGHLGAWKEGDKIHEYIREE----RLDM-NV 245 (582)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 245 (582)
..+......+...|++++|+..|++..+.. +.+ ...+..+...+...|++++|...++++++. +..| ..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344445555555666666666665555543 223 234445555555566666666655554332 1111 13
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHHHHHHHhCCC--------------------hhHHH
Q 007998 246 VVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTMVMAFAVHGD--------------------GPRAL 297 (582)
Q Consensus 246 ~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 297 (582)
.++..+...|...|++++|...|++.. ..++ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 445556666666666666666665442 0011 2355666666666666 66666
Q ss_pred HHHHHHHhc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC----hhhHHhhhhHHhhcCCHHHHH
Q 007998 298 ELFEQMGRA----GVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN----MKHYGSVVDLLGRAGRLQEAC 367 (582)
Q Consensus 298 ~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~ 367 (582)
..+++.... +-.|. ..++..+...+...|++++|...+++..+ ..-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666655431 11111 23556666667777777777777776665 111111 235666677777777777777
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhHHHHHHHHHhcCCchHHH
Q 007998 368 DIVKSV----SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN------CGDFVLLSNLYAAYERWDDVG 433 (582)
Q Consensus 368 ~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~ 433 (582)
+.+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 776654 11111 4566677777788888888888888877764322 456777888888888888888
Q ss_pred HHHHHHHh
Q 007998 434 RVRKAMKN 441 (582)
Q Consensus 434 ~~~~~m~~ 441 (582)
..+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=9e-13 Score=129.16 Aligned_cols=264 Identities=13% Similarity=0.026 Sum_probs=176.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCCcHHHHHHHHHHHHc----CCCC-chhH
Q 007998 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN----EVTVLGALAACGHLGAWKEGDKIHEYIREE----RLDM-NVVV 247 (582)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 247 (582)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+.+.++. +..+ ...+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444555666677777777777766653 233 245556666666777777777766665432 1111 2455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHHHHHHHhCCC--------------------hhHHHHH
Q 007998 248 CNAVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTMVMAFAVHGD--------------------GPRALEL 299 (582)
Q Consensus 248 ~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 299 (582)
+..+...|...|++++|...|++.. ..++ ..++..+...|...|+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 6667777777777777777776543 0122 2366677777777777 7777777
Q ss_pred HHHHHhc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC----hhhHHhhhhHHhhcCCHHHHHHH
Q 007998 300 FEQMGRA----GVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN----MKHYGSVVDLLGRAGRLQEACDI 369 (582)
Q Consensus 300 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~ 369 (582)
+++.... +..|. ...+..+...+...|++++|...+++..+ ..-.++ ...+..+...|...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7765431 11121 23566777778888888888888888776 111111 23677778888888999999888
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhHHHHHHHHHhcCCchHHHHH
Q 007998 370 VKSV----SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN------CGDFVLLSNLYAAYERWDDVGRV 435 (582)
Q Consensus 370 ~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~ 435 (582)
+++. +..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8765 11112 5577788888999999999999999988865422 44778899999999999999999
Q ss_pred HHHHHhC
Q 007998 436 RKAMKNR 442 (582)
Q Consensus 436 ~~~m~~~ 442 (582)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9988754
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=1.3e-12 Score=130.36 Aligned_cols=229 Identities=12% Similarity=0.055 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhccc--CCCCHHHHHHHHHH
Q 007998 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL-LDKAFEVFDNIK--CRKSLVTWNTMVMA 286 (582)
Q Consensus 210 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~--~~~~~~~~~~li~~ 286 (582)
...|..+..++...|++++|...++++++... .+..+|+.+..+|.+.|+ +++|+..|++.. .+.+...|+.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 45677888888999999999999999999863 368899999999999997 999999999765 35688899999999
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhh-cCCHH
Q 007998 287 FAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR-AGRLQ 364 (582)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 364 (582)
+...|++++|+..|+++++. .| +...|..+..++...|++++|...|+++++.. +-+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999985 44 55788999999999999999999999999843 3467788889999998 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC--------
Q 007998 365 EA-----CDIVKSV-SMGT-DMVLWQTLLGACQLYG--DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE-------- 427 (582)
Q Consensus 365 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 427 (582)
+| ++.+++. ...| +...|..+...+...| ++++|.+.++++ +.+|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4667665 4455 6889999999998888 689999999998 889999999999999999875
Q ss_pred -CchHHHHHHHHH-HhCC
Q 007998 428 -RWDDVGRVRKAM-KNRD 443 (582)
Q Consensus 428 -~~~~a~~~~~~m-~~~~ 443 (582)
..++|.++++++ .+.+
T Consensus 332 ~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 258999999988 5543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=9.8e-13 Score=132.98 Aligned_cols=297 Identities=11% Similarity=-0.043 Sum_probs=177.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C----C
Q 007998 106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD---ALLGTTLLDVYAKVGEIVSAKKVFDEMGV-----R----D 173 (582)
Q Consensus 106 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~----~ 173 (582)
+....+......+...|++++|...++.+++...... ..++..+...|...|++++|...|++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444556666777788888888888888887743211 24566777777778888877777765421 1 2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCC--------------------cHHH
Q 007998 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN----EVTVLGALAACGHLGA--------------------WKEG 229 (582)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd----~~t~~~ll~a~~~~~~--------------------~~~a 229 (582)
..+|..+...|...|++++|+..+.+........++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 345666666777777777777777666543100011 2244444444444554 3333
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC-
Q 007998 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG- 307 (582)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 307 (582)
...+.+..+. +...... ....+|..+...|...|++++|+..|++..+..
T Consensus 167 ~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 167 VDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3333332221 1111100 012345556666666666666666666654320
Q ss_pred CCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC----C
Q 007998 308 VKPD----DVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV----S 374 (582)
Q Consensus 308 ~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 374 (582)
-.++ ..++..+...+...|++++|...+++..+ ..-.++ ...+..+...|...|++++|.+.+++. +
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 0111 12556666667777777777777776665 110111 345666777777888888887777654 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCchhHHHHHHHHHhcCCch
Q 007998 375 MGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGS------NNCGDFVLLSNLYAAYERWD 430 (582)
Q Consensus 375 ~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 430 (582)
..++ ..++..+...+...|++++|...++++++..+ ....++..++.+|...|+..
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1112 55777888899999999999999999888632 23457778888888888754
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=9.3e-12 Score=110.90 Aligned_cols=165 Identities=13% Similarity=0.093 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhh
Q 007998 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354 (582)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 354 (582)
+...|..+...|...|++++|++.|++..+. .| +...+..+..++.+.|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 4455666666666666666666666666653 33 33456666666666777777777666666522 22344555566
Q ss_pred hHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHH
Q 007998 355 DLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV 432 (582)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 432 (582)
..+...+++++|.+.+++. ...| +...|..+...+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6666777777777776654 2233 5677777888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCC
Q 007998 433 GRVRKAMKNRD 443 (582)
Q Consensus 433 ~~~~~~m~~~~ 443 (582)
.+.+++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 88888776643
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=1.2e-12 Score=135.42 Aligned_cols=211 Identities=9% Similarity=-0.025 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCc-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007998 190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW-KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF 268 (582)
Q Consensus 190 ~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 268 (582)
++++++.+.+..... +.+...+..+..++...|++ ++|...++++++..
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---------------------------- 133 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---------------------------- 133 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----------------------------
Confidence 445555555444332 33455555555555555555 55555555555443
Q ss_pred hcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHh
Q 007998 269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA---------GLVDDGVRLFNSMA 339 (582)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~ 339 (582)
+.+...|..+...|...|++++|+..|++..+. .|+...+..+..++... |++++|...|+++.
T Consensus 134 -----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al 206 (474)
T 4abn_A 134 -----PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206 (474)
T ss_dssp -----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 223445555555555555555555555555542 34445555555555555 66666666666666
Q ss_pred HcCCccChhhHHhhhhHHhhc--------CCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998 340 NCGVKPNMKHYGSVVDLLGRA--------GRLQEACDIVKSV-SMGT----DMVLWQTLLGACQLYGDVEMAEIASRKLV 406 (582)
Q Consensus 340 ~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 406 (582)
+.. +.+...|..+..+|... |++++|.+.|++. ...| +...|..+..++...|++++|...|++++
T Consensus 207 ~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 207 QMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 522 22345566666666666 7777777777765 3334 78889999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998 407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438 (582)
Q Consensus 407 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 438 (582)
+++|+++.++..++.++...|++++|.+.+++
T Consensus 286 ~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 286 ALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999876543
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=7.4e-11 Score=114.67 Aligned_cols=219 Identities=10% Similarity=0.032 Sum_probs=160.8
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-------ccCCc-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007998 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACG-------HLGAW-------KEGDKIHEYIREERLDMNVVVCNAVIDMYA 256 (582)
Q Consensus 191 ~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 256 (582)
++|+.+|++.+... +.+...|...+..+. +.|++ ++|..++++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67888888887764 566777777777665 34776 788888888887312335668888888888
Q ss_pred hcCCHHHHHHHHhccc-CCC-CHH-HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HcCCCHHHHH
Q 007998 257 KCGLLDKAFEVFDNIK-CRK-SLV-TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC-NHAGLVDDGV 332 (582)
Q Consensus 257 ~~g~~~~A~~~~~~~~-~~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 332 (582)
+.|++++|.++|++.. ..| +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888999988888764 234 333 78888888888888999999998888753 22334444333322 2368899999
Q ss_pred HHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-S---MGT--DMVLWQTLLGACQLYGDVEMAEIASRKLV 406 (582)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 406 (582)
.+|++..+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..++++++
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998888732 235677788888888888899888888876 2 344 46788888888888899999999999988
Q ss_pred HcCCCCc
Q 007998 407 EMGSNNC 413 (582)
Q Consensus 407 ~~~p~~~ 413 (582)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8888654
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=5.5e-12 Score=127.92 Aligned_cols=132 Identities=11% Similarity=0.011 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHhHc-C-Cc---cChh
Q 007998 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPD----DVSYLAALCACNHAGLVDDGVRLFNSMANC-G-VK---PNMK 348 (582)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~-~~---~~~~ 348 (582)
+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...+++.... . .. ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344444444444444444444444433100 001 124444555555555555555555555441 0 00 0134
Q ss_pred hHHhhhhHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998 349 HYGSVVDLLGRAGRLQEACDIVKSV-------SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS 410 (582)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 410 (582)
.+..+...|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666544 1111 244677788888888999999999999888765
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=1.4e-11 Score=109.78 Aligned_cols=168 Identities=12% Similarity=0.043 Sum_probs=135.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007998 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA 321 (582)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 321 (582)
+..+|..+...|.+.|++++|.+.|++.. .+.+..+|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56778888888888888888888888654 25577788888888888899999988888887752 2344566667777
Q ss_pred HHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007998 322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAE 399 (582)
Q Consensus 322 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 399 (582)
+...++++.+...+.+..+.. +.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 888899999999988888732 345677778888899999999999998876 3344 6888999999999999999999
Q ss_pred HHHHHHHHcCCCCc
Q 007998 400 IASRKLVEMGSNNC 413 (582)
Q Consensus 400 ~~~~~~~~~~p~~~ 413 (582)
..|+++++++|+++
T Consensus 162 ~~~~~al~~~p~~a 175 (184)
T 3vtx_A 162 KYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHTTHHHH
T ss_pred HHHHHHHhCCccCH
Confidence 99999999998653
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=1.7e-11 Score=123.23 Aligned_cols=229 Identities=10% Similarity=-0.008 Sum_probs=143.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC------CchhHHH
Q 007998 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKP----NEVTVLGALAACGHLGAWKEGDKIHEYIREERLD------MNVVVCN 249 (582)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~m~~~g~~~p----d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 249 (582)
....+...|++++|++.|++....-...+ ...++..+...+...|++++|...+.+.++.-.. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45556677888888888777765310012 2346667777777777777777777776643111 1134667
Q ss_pred HHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCC-HHHHH
Q 007998 250 AVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTMVMAFAVHGDGPRALELFEQMGRA----GVKPD-DVSYL 316 (582)
Q Consensus 250 ~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 316 (582)
.+...|...|++++|.+.|++.. ..++ ..++..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 77777888888888887777543 0112 236777777888888888888888777651 22233 35677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhH-cC---CccChhhHHhhhhHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 007998 317 AALCACNHAGLVDDGVRLFNSMAN-CG---VKPNMKHYGSVVDLLGRAGR---LQEACDIVKSVSMGTD-MVLWQTLLGA 388 (582)
Q Consensus 317 ~ll~a~~~~g~~~~a~~~~~~~~~-~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~ll~~ 388 (582)
.+...+...|++++|...+++..+ .. -+.....+..+...|...|+ +++|..++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 777778888888888888877766 11 11112234556666667776 6777777776644332 3345556666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 007998 389 CQLYGDVEMAEIASRKLVEM 408 (582)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~ 408 (582)
|...|++++|...++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 66667777777666666654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=9.2e-12 Score=125.20 Aligned_cols=225 Identities=7% Similarity=-0.026 Sum_probs=172.8
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC-----HHHHH
Q 007998 216 ALAACGHLGAWKEGDKIHEYIREE----RLDM-NVVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS-----LVTWN 281 (582)
Q Consensus 216 ll~a~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~-----~~~~~ 281 (582)
....+...|++++|...+.+..+. +-++ ...++..+...|...|++++|...|++.. ..++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999999864 2111 35788899999999999999999988653 1222 35788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCC-CCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHhHc----CC-ccChhhHH
Q 007998 282 TMVMAFAVHGDGPRALELFEQMGRAGV-KPDD----VSYLAALCACNHAGLVDDGVRLFNSMANC----GV-KPNMKHYG 351 (582)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 351 (582)
.+...|...|++++|+..|++..+... .++. .++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999875310 1222 47888899999999999999999998871 33 23356788
Q ss_pred hhhhHHhhcCCHHHHHHHHHhC-CC-----CC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998 352 SVVDLLGRAGRLQEACDIVKSV-SM-----GT-DMVLWQTLLGACQLYGD---VEMAEIASRKLVEMGSNNCGDFVLLSN 421 (582)
Q Consensus 352 ~li~~~~~~g~~~~A~~~~~~~-~~-----~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 421 (582)
.+...|.+.|++++|.+.+++. .. .| ....+..+...+...|+ +++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999998865 11 12 22335667778888888 77777777665 222344567889999
Q ss_pred HHHhcCCchHHHHHHHHHHh
Q 007998 422 LYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 422 ~~~~~g~~~~a~~~~~~m~~ 441 (582)
+|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=1.3e-11 Score=120.82 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC-------CCCC-CHH
Q 007998 314 SYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV-------SMGT-DMV 380 (582)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~ 380 (582)
++..+...+...|++++|...+++..+ ..-.++ ...+..+...|...|++++|.+.+++. +..+ ...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 344444444455555555555544443 100001 234445555556666666665555543 1001 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGS 410 (582)
Q Consensus 381 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 410 (582)
++..+...+...|++++|...+++++++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 666677777888888888888888877654
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=7.7e-10 Score=117.77 Aligned_cols=405 Identities=8% Similarity=-0.035 Sum_probs=274.2
Q ss_pred cchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCC---chHHHHHHHHHHhCC-CCCChhHH
Q 007998 40 FPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSK---PTNAVLWYRQMLRGS-HRSDALTC 111 (582)
Q Consensus 40 ~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~~~~ 111 (582)
|.-...|..+++...+ +.++.|+.+|+++. +.+...|...+..-.+.++ ++.+..+|++.+... ..|+...|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 3334557899998877 99999999999874 4567789999998888888 999999999998864 13777777
Q ss_pred HHHHHHHHhcCCh--------HHHHHHHHHHHH-cCC-CCc-hHHHHHHHHHHH---------hcCCHHHHHHHHhhcCC
Q 007998 112 SFALKACARVLAL--------FETLQIHSHVLR-HGF-LAD-ALLGTTLLDVYA---------KVGEIVSAKKVFDEMGV 171 (582)
Q Consensus 112 ~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~---------~~g~~~~A~~~f~~m~~ 171 (582)
..-+......++. +..+++|+.++. .|. .++ ..+|...+.... ..++++.++++|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7766655554443 345578887765 355 443 467887776544 23457889999988753
Q ss_pred -C--Ch-hHHH---HHHHHHH----------hCCChhHHHHHHHHHHHc--CCC---C-----------C-----C---H
Q 007998 172 -R--DI-ASWN---ALIAGLA----------QGNLASEAVDLFKRMKME--GVF---K-----------P-----N---E 210 (582)
Q Consensus 172 -~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~--g~~---~-----------p-----d---~ 210 (582)
| +. .+|. .+..... ...+++.|...+.++... ++. + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 2 11 2332 2222210 011233444555443211 110 1 1 1 1
Q ss_pred HHHHHHHHHHhccC-------CcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhccc--CCCCHHHH
Q 007998 211 VTVLGALAACGHLG-------AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF-EVFDNIK--CRKSLVTW 280 (582)
Q Consensus 211 ~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~--~~~~~~~~ 280 (582)
..|...+.---..+ ..+.+..+|++.+... +.+..+|...+..+.+.|+.++|. ++|++.. ++.+...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 22333333222221 1233556788887763 447788888888888999999996 9998764 45677788
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcC---------CCCC------------HHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 007998 281 NTMVMAFAVHGDGPRALELFEQMGRAG---------VKPD------------DVSYLAALCACNHAGLVDDGVRLFNSMA 339 (582)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 339 (582)
-..+...-+.|++++|.++|+++.... -.|+ ...|...+....+.|..+.|..+|.++.
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888999999999999999999988631 0142 2357777777778899999999999998
Q ss_pred HcCCccChhhHHhhhhHHhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---Cc
Q 007998 340 NCGVKPNMKHYGSVVDLLGRAG-RLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN---NC 413 (582)
Q Consensus 340 ~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~ 413 (582)
+....+....|...+.+-.+.+ +.+.|.++|+.. ....+...|...+......|+.+.|..+|++++...|+ ..
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 7411223344444444444444 589999999876 22236778888888888899999999999999998873 34
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
..+...+..-...|..+.+.++.+++.+.-..
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 56777777778899999999999999876543
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=2.9e-12 Score=124.35 Aligned_cols=165 Identities=10% Similarity=0.043 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHc-------CCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc------CC
Q 007998 175 ASWNALIAGLAQGNLASEAVDLFKRMKME-------GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE------RL 241 (582)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~ 241 (582)
.+|..+...|...|++++|+.+|+++.+. .. +....++..+...+...|++++|...+.++++. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44555555566666666666666555542 11 223344555555666666666666666655543 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHhccc-C---------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc----
Q 007998 242 -DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-C---------RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA---- 306 (582)
Q Consensus 242 -~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 306 (582)
+.....+..+...|...|++++|.+.|++.. . ......|..+...|...|++++|+..|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1124455566666666666666666665443 0 112345666666677777777777777766553
Q ss_pred --CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998 307 --GVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMAN 340 (582)
Q Consensus 307 --g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 340 (582)
+..|+. .++..+...+...|++++|..+++++.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112322 3566666677777777777777777665
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=3.6e-09 Score=112.67 Aligned_cols=398 Identities=7% Similarity=-0.028 Sum_probs=272.6
Q ss_pred chHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CC---HHHHHHHHhcCC--C---CCh
Q 007998 3 NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NE---LAYAHALFRQIN--A---PST 73 (582)
Q Consensus 3 ~~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~---~~~A~~~f~~~~--~---~~~ 73 (582)
+|..++..+-.. +++..++.++..+++.-.. . ..+ |..-+.+-.+ |+ ++.+..+|++.. . |++
T Consensus 68 ~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~-~--~~l---W~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 68 LYVKLLKHHVSL--KQWKQVYETFDKLHDRFPL-M--ANI---WCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTT-C--HHH---HHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred HHHHHHHHHHhc--CcHHHHHHHHHHHHHHCCC-C--HHH---HHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 566777777663 3589999999999876322 2 223 4566666556 77 999999999854 2 888
Q ss_pred hHHHHHHHHHHcCCCc----h----HHHHHHHHHHh-CCC-CCCh-hHHHHHHHHHH---------hcCChHHHHHHHHH
Q 007998 74 NDFNAVLRGLAHSSKP----T----NAVLWYRQMLR-GSH-RSDA-LTCSFALKACA---------RVLALFETLQIHSH 133 (582)
Q Consensus 74 ~~~~~li~~~~~~g~~----~----~A~~~~~~m~~-~g~-~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~ 133 (582)
..|...+....+.++. + ...++|+..+. .|. .|+. ..|...+.... ..++++.++.+|..
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 8999988776665543 2 34477877654 366 5654 46666655432 23457789999999
Q ss_pred HHHcCCCCchHHHHHHHHHHHh-------------cCCHHHHHHHHhhc-----------CC----------C--C----
Q 007998 134 VLRHGFLADALLGTTLLDVYAK-------------VGEIVSAKKVFDEM-----------GV----------R--D---- 173 (582)
Q Consensus 134 ~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~m-----------~~----------~--~---- 173 (582)
++......-..+|......-.. ..+++.|...+.++ +. | +
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 8864222222333222111111 11233455555431 10 0 0
Q ss_pred --hhHHHHHHHHHHhCC-------ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHH-HHHHHHHHcCCCC
Q 007998 174 --IASWNALIAGLAQGN-------LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD-KIHEYIREERLDM 243 (582)
Q Consensus 174 --~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~ 243 (582)
...|...+.---.++ ..+.+..+|++.+..- +-+...|...+.-+...|+.++|. .+++..+... +.
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~ 376 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PN 376 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CC
Confidence 245666665444433 1234567888888764 667888888888888889999996 9999998764 45
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcccC------------CCC------------HHHHHHHHHHHHhCCChhHHHHH
Q 007998 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKC------------RKS------------LVTWNTMVMAFAVHGDGPRALEL 299 (582)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------~~~------------~~~~~~li~~~~~~g~~~~A~~~ 299 (582)
+...+...+..+.+.|+++.|.++|+++.. .|+ ...|...+....+.|+.+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 677888899999999999999999997651 132 23688888888889999999999
Q ss_pred HHHHHhc-CCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC
Q 007998 300 FEQMGRA-GVKPDDVSYLAALCACNH-AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG 376 (582)
Q Consensus 300 ~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 376 (582)
|.+..+. +. +....|......-.+ .++.+.|.++|+...+. .+-+...+...++.....|+.+.|..+|++. ...
T Consensus 457 f~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 457 FGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999875 21 122333322222223 35699999999999983 2345566778888888999999999999986 323
Q ss_pred C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998 377 T----DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413 (582)
Q Consensus 377 p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 413 (582)
| ....|...+..-..+|+.+.+..+.+++.+..|+++
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 3 357899999999999999999999999999999764
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=1.9e-10 Score=111.73 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV-TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 254 (582)
.|..++..+.+.|++++|.++|++..+.. +.+.. .|..++..+.+.|++++|..+|++.++... .+...|......
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~ 177 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 44444444444444444444444444321 11121 344444444444444444444444444321 122333222222
Q ss_pred HH-hcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHcCCCH
Q 007998 255 YA-KCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPD--DVSYLAALCACNHAGLV 328 (582)
Q Consensus 255 y~-~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~ 328 (582)
.. ..|++++|.++|++.. .+.+...|..++..+.+.|+.++|..+|++..... +.|+ ...|..++....+.|+.
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 11 2355555555555432 12344555555555555566666666666655532 2332 33455555555555666
Q ss_pred HHHHHHHHHHhH
Q 007998 329 DDGVRLFNSMAN 340 (582)
Q Consensus 329 ~~a~~~~~~~~~ 340 (582)
+.|..+++++.+
T Consensus 258 ~~a~~~~~~a~~ 269 (308)
T 2ond_A 258 ASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666555
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=4e-12 Score=123.35 Aligned_cols=233 Identities=11% Similarity=0.078 Sum_probs=171.2
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-C-------
Q 007998 209 NEVTVLGALAACGHLGAWKEGDKIHEYIREE-------RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-C------- 273 (582)
Q Consensus 209 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~------- 273 (582)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...|++.. .
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888889999999999999999998874 233456788899999999999999999998654 0
Q ss_pred --CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc------CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHc---
Q 007998 274 --RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA------GVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANC--- 341 (582)
Q Consensus 274 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--- 341 (582)
.....+|..+...|...|++++|+..|+++.+. +-.|+. ..+..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 123457888999999999999999999998764 223433 56788888999999999999999999873
Q ss_pred ---CCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-C---------CCCC-------HHHHHHHHHHHHhcCChHHHHH
Q 007998 342 ---GVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-S---------MGTD-------MVLWQTLLGACQLYGDVEMAEI 400 (582)
Q Consensus 342 ---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~-------~~~~~~ll~~~~~~g~~~~a~~ 400 (582)
+..| ....+..+...|.+.|++++|.+.++++ . ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2123 3457788899999999999999998765 1 1111 1223333344556667777888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
.+++.....|..+.++..++.+|...|++++|...+++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888889999999999999999999999998764
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=3.9e-11 Score=129.26 Aligned_cols=163 Identities=11% Similarity=0.119 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhh
Q 007998 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV 354 (582)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 354 (582)
+..+|+.|...|.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|...|++.++.. +-+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567777777888888888888888877764 454 4577777778888888888888888877732 22456777788
Q ss_pred hHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHH
Q 007998 355 DLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV 432 (582)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 432 (582)
.+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..|+++++++|+++..+..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888888888888888765 4445 6788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 007998 433 GRVRKAMKN 441 (582)
Q Consensus 433 ~~~~~~m~~ 441 (582)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887653
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=2e-09 Score=107.56 Aligned_cols=261 Identities=15% Similarity=0.015 Sum_probs=164.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHhccCCcHHHHHHHHHHHHcCCC-Cc----hhHHHH
Q 007998 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV----TVLGALAACGHLGAWKEGDKIHEYIREERLD-MN----VVVCNA 250 (582)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 250 (582)
....+...|++++|...+++...... ..+.. ++..+...+...|++++|...+.+..+.... .+ ...+..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445566777777777766655432 22222 3444555566667777777777666542110 11 223455
Q ss_pred HHHHHHhcCCHHHHHHHHhccc------CC---C-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCC--C--CHHHHH
Q 007998 251 VIDMYAKCGLLDKAFEVFDNIK------CR---K-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK--P--DDVSYL 316 (582)
Q Consensus 251 li~~y~~~g~~~~A~~~~~~~~------~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~ 316 (582)
+...|...|++++|...|++.. .. | ....+..+...+...|++++|...+++....... | ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 6677777788887777776543 01 2 1235566777778888888888888877653211 1 124566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhHc-CCccChhhHH-----hhhhHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHH
Q 007998 317 AALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYG-----SVVDLLGRAGRLQEACDIVKSV-SMGTD-----MVLWQT 384 (582)
Q Consensus 317 ~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ 384 (582)
.+...+...|++++|...+++.... .-......+. ..+..+...|++++|...+++. ...|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 6777778888888888888887762 1111111111 2334467888888888888876 22221 335667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC-----C-chhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 385 LLGACQLYGDVEMAEIASRKLVEMGSN-----N-CGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 385 ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
+...+...|++++|...++++.+..+. + ...+..++.++...|+.++|...+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 778888889999999999988775321 1 23667788889999999999998887654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.5e-10 Score=116.07 Aligned_cols=303 Identities=9% Similarity=0.023 Sum_probs=148.4
Q ss_pred CCChhHHHHHHHHH--HhcCChHHHHHHHHHHHHcC--C--CCchHHHHHHHHHHH--hcCCHHHHH---------HHHh
Q 007998 105 RSDALTCSFALKAC--ARVLALFETLQIHSHVLRHG--F--LADALLGTTLLDVYA--KVGEIVSAK---------KVFD 167 (582)
Q Consensus 105 ~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~--~~g~~~~A~---------~~f~ 167 (582)
.|+...-..+-..+ ...+++++|.++.+.+.+.. . .++...|-.|+..-. -.+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34444444455555 57778888888887765531 1 222333333333210 011111111 3333
Q ss_pred hcC---CC-C-h---hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCCcHHHHHHHHH
Q 007998 168 EMG---VR-D-I---ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN----EVTVLGALAACGHLGAWKEGDKIHEY 235 (582)
Q Consensus 168 ~m~---~~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~ 235 (582)
.+. .+ + . ..|......+...|++++|+..|++....-...+| ..++..+..++...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 332 11 0 0 11223344456677777777777776543110122 23556666666677777777776666
Q ss_pred HHHcCC-----CC-chhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHHHHHHHhCCChhHHHHHHH
Q 007998 236 IREERL-----DM-NVVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTMVMAFAVHGDGPRALELFE 301 (582)
Q Consensus 236 ~~~~~~-----~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 301 (582)
.++... .+ ...+++.+...|...|++++|.+.|++.. ..++ ..+++.+...|...|++++|+..|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 654210 11 13455566666666666666666665432 0011 2345556666666666666666666
Q ss_pred HHHhc----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC---hhhHHhhhhHHhhcCC---HHHHHHHH
Q 007998 302 QMGRA----GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN---MKHYGSVVDLLGRAGR---LQEACDIV 370 (582)
Q Consensus 302 ~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~ 370 (582)
+..+. +.+....++..+...+.+.|++++|...+++..+ ..-.++ ...+..+...|...++ +++|...+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 65541 1111134555555666666666666666666655 211111 2233344444445555 55555555
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998 371 KSVSMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVE 407 (582)
Q Consensus 371 ~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 407 (582)
++.+..|+ ...+..+...|...|++++|...++++++
T Consensus 327 ~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55432222 22333444455555555555555555443
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=9.1e-11 Score=121.29 Aligned_cols=209 Identities=10% Similarity=-0.065 Sum_probs=166.9
Q ss_pred CHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCCh-hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHH
Q 007998 158 EIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLA-SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH 233 (582)
Q Consensus 158 ~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 233 (582)
.++++...+++.. ..+...|..+...|...|++ ++|++.|++..+.. +.+...+..+..++...|++++|...+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3667777776653 34678999999999999999 99999999999885 567889999999999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhc---------CCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhC--------CChh
Q 007998 234 EYIREERLDMNVVVCNAVIDMYAKC---------GLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVH--------GDGP 294 (582)
Q Consensus 234 ~~~~~~~~~~~~~~~~~li~~y~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~--------g~~~ 294 (582)
++.++.. |+...+..+...|... |++++|.+.|++.. .+.+...|..+..+|... |+++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9998864 5578888899999998 89999999988754 355678888888888888 8888
Q ss_pred HHHHHHHHHHhcCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHH
Q 007998 295 RALELFEQMGRAGVKP----DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370 (582)
Q Consensus 295 ~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 370 (582)
+|+..|++..+. .| +...+..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888774 44 56677788888888888888888888887732 224456666777777777777777766
Q ss_pred HhC
Q 007998 371 KSV 373 (582)
Q Consensus 371 ~~~ 373 (582)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=1.9e-10 Score=101.91 Aligned_cols=161 Identities=15% Similarity=0.046 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007998 246 VVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323 (582)
Q Consensus 246 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 323 (582)
..+..+...|...|++++|...|+++. .+.+...|..+...+...|++++|...++++.+. .|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~------------- 73 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--AP------------- 73 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC-------------
Confidence 344555555666666666666666543 1234445555555555555555555555555443 11
Q ss_pred cCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHH
Q 007998 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SM-GTDMVLWQTLLGACQLYGDVEMAEIA 401 (582)
Q Consensus 324 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~ 401 (582)
.+...+..+...|...|++++|.+.++++ .. +.+...|..+...+...|++++|...
T Consensus 74 ---------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 74 ---------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 22333444444445555555555555443 11 12455666666777777777777777
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
++++++..|.++..+..++.+|...|++++|...+++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777766543
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=2e-09 Score=107.82 Aligned_cols=300 Identities=10% Similarity=0.004 Sum_probs=180.1
Q ss_pred CCchHHHHHHHHHH--HhcCCHHHHHHHHhhcC-------C-CChhHHHHHHHH--HHhCCChhHHH---------HHHH
Q 007998 140 LADALLGTTLLDVY--AKVGEIVSAKKVFDEMG-------V-RDIASWNALIAG--LAQGNLASEAV---------DLFK 198 (582)
Q Consensus 140 ~~~~~~~~~li~~y--~~~g~~~~A~~~f~~m~-------~-~~~~~~~~li~~--~~~~g~~~~A~---------~~~~ 198 (582)
.|+..+-+.|-+.| .+.+++++|.++++++. + .++..|-.++.. ....+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45566666666666 77888888887776542 1 133334444332 11112222222 5555
Q ss_pred HHHHcCCCCCCH----HHHHHHHHHHhccCCcHHHHHHHHHHHHcC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHh
Q 007998 199 RMKMEGVFKPNE----VTVLGALAACGHLGAWKEGDKIHEYIREER--LD---MNVVVCNAVIDMYAKCGLLDKAFEVFD 269 (582)
Q Consensus 199 ~m~~~g~~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~ 269 (582)
.+..... +.+. ..+......+...|++++|...+.+..+.. .. ....++..+...|...|+++.|...++
T Consensus 87 ~i~~~~~-~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 87 TIETPQK-KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHGGGH-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccCC-CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 5543221 1111 123344556677888888888888776531 11 124567777888888888888877776
Q ss_pred ccc----CCC-----CHHHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHH
Q 007998 270 NIK----CRK-----SLVTWNTMVMAFAVHGDGPRALELFEQMGRA----GVKPD-DVSYLAALCACNHAGLVDDGVRLF 335 (582)
Q Consensus 270 ~~~----~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 335 (582)
+.. ..+ ...+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 542 111 1346777788888888888888888776652 11111 246677777888888888888888
Q ss_pred HHHhH-c---CCccChhhHHhhhhHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hHHHHHH
Q 007998 336 NSMAN-C---GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV----SM--GTD-MVLWQTLLGACQLYGD---VEMAEIA 401 (582)
Q Consensus 336 ~~~~~-~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~ 401 (582)
++..+ . +.+....++..+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +++|...
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 87776 1 22223566777778888888888888887754 11 122 3344445555566666 6666666
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 326 ~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6552 11133345666788888888888888888777643
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=5.9e-10 Score=98.61 Aligned_cols=170 Identities=13% Similarity=0.100 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHH
Q 007998 210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAF 287 (582)
Q Consensus 210 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~ 287 (582)
...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|++.. .+.+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567778888999999999999999887654 3467888999999999999999999999764 355778888899999
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHH
Q 007998 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367 (582)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 367 (582)
...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++++.+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------- 140 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR------------------------- 140 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------------------------
Confidence 99999999999999887752 3345566666666667777777777666665421
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998 368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414 (582)
Q Consensus 368 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 414 (582)
..+...|..+...+...|++++|...++++++..|+++.
T Consensus 141 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 141 --------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred --------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 124556666777777777777777777777777765543
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=6.5e-10 Score=102.63 Aligned_cols=206 Identities=8% Similarity=-0.004 Sum_probs=159.5
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-C-CCCHHHHHHHH
Q 007998 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-C-RKSLVTWNTMV 284 (582)
Q Consensus 207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~-~~~~~~~~~li 284 (582)
+.|+..+......+...|++++|...|++.++...+++...+..+...|.+.|++++|.+.|++.. . +.+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 457788899999999999999999999999998754677777779999999999999999999764 2 34567899999
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCC-H-------HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC---hhhHHhh
Q 007998 285 MAFAVHGDGPRALELFEQMGRAGVKPD-D-------VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN---MKHYGSV 353 (582)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 353 (582)
..|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+++.+. .|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 9999999999999999999875 343 3 35777778888999999999999999874 344 4667777
Q ss_pred hhHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 354 VDLLGRAGRLQEACDIVKSV-SM-GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423 (582)
Q Consensus 354 i~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (582)
..+|...|+. .++++ .. ..+...|.... ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777665543 22322 11 12344444443 33456789999999999999999988777776554
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=6.7e-09 Score=103.63 Aligned_cols=225 Identities=8% Similarity=-0.100 Sum_probs=121.6
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhCCCCCChh----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----hHHHHH
Q 007998 78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL----TCSFALKACARVLALFETLQIHSHVLRHGFL-AD----ALLGTT 148 (582)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~ 148 (582)
.+...+...|++++|...+++.+......+.. .+..+...+...|++++|.+.++..++.... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445567788888888888877654222222 3445556666778888888888777653211 11 123455
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC-------C---C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----CHHHH
Q 007998 149 LLDVYAKVGEIVSAKKVFDEMG-------V---R-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP----NEVTV 213 (582)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~-------~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p----d~~t~ 213 (582)
+...|...|++++|...+++.. . + ....+..+...+...|++++|...+++...... .. ...++
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 177 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS-SYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TSCGGGGHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-ccCcHHHHHHH
Confidence 6666777777777776665542 1 1 123445556666667777777777766654321 10 12345
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCCc--hhHHH----HHHHHHHhcCCHHHHHHHHhcccCCCC-------HHHH
Q 007998 214 LGALAACGHLGAWKEGDKIHEYIREERLDMN--VVVCN----AVIDMYAKCGLLDKAFEVFDNIKCRKS-------LVTW 280 (582)
Q Consensus 214 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~ 280 (582)
..+...+...|++++|...+++..+....++ ..... ..+..+...|++++|...+++.. .++ ...+
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA-KPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC-CCCCTTCGGGHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC-CCCCCcchhhHHHH
Confidence 5555566666666666666666554311111 11111 22233556666666666665543 111 1133
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q 007998 281 NTMVMAFAVHGDGPRALELFEQMG 304 (582)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m~ 304 (582)
..+...+...|++++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555555543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=3.2e-10 Score=104.73 Aligned_cols=190 Identities=11% Similarity=-0.031 Sum_probs=124.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccc--CC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHH
Q 007998 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAAL 319 (582)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 319 (582)
|+..+..+...|.+.|++++|...|++.. .+ ++...|..+..++...|++++|+..|++..+. .|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 45667777777778888888888877553 23 66666666777777888888888888777763 4543 4666777
Q ss_pred HHHHcCCCHHHHHHHHHHHhHcCCccCh-------hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 007998 320 CACNHAGLVDDGVRLFNSMANCGVKPNM-------KHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD---MVLWQTLLGA 388 (582)
Q Consensus 320 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~ 388 (582)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++. ...|+ ...|..+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 77777788888888887777622 1122 34566666677777777777777765 44554 3455555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
+.. .+...++++..+.+.++..|..+ .....+.+++|...+++..+..
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 543 34455566666665554444332 2334556799999999887654
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.11 E-value=3.4e-09 Score=114.20 Aligned_cols=160 Identities=10% Similarity=-0.017 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 007998 143 ALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219 (582)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a 219 (582)
...++.|..+|.+.|++++|++.|++.. ..+..+|+.+...|.+.|++++|++.|++.++.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 4456666666666666666666666542 2345566666666666667777776666666654 4456666666666
Q ss_pred HhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHH
Q 007998 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRAL 297 (582)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~ 297 (582)
+...|++++|.+.+++.++... -+...++.+..+|.+.|++++|++.|++.. .+.+...|..+...|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 7777777777777766666542 245666667777777777777777776543 2345566777777777777777777
Q ss_pred HHHHHHHh
Q 007998 298 ELFEQMGR 305 (582)
Q Consensus 298 ~~~~~m~~ 305 (582)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=1.6e-09 Score=103.11 Aligned_cols=221 Identities=11% Similarity=0.093 Sum_probs=156.2
Q ss_pred hccCCcHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-C---------CCCHHHHHHH
Q 007998 221 GHLGAWKEGDKIHEYIREE-------RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-C---------RKSLVTWNTM 283 (582)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~---------~~~~~~~~~l 283 (582)
...|++++|...+++.++. ..+....++..+...|...|++++|...|++.. . +....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4668888888888887652 222346788899999999999999999998654 0 1234578889
Q ss_pred HHHHHhCCChhHHHHHHHHHHhc------CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHc------CCcc-Chhh
Q 007998 284 VMAFAVHGDGPRALELFEQMGRA------GVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANC------GVKP-NMKH 349 (582)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~ 349 (582)
...|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+++++.+. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 11233 457888888999999999999999998873 1123 3567
Q ss_pred HHhhhhHHhhcCCHHHHHHHHHhC----------CCCC-CHHHHHHHHHHHHhcCChH------HHHHHHHHHHHcCCCC
Q 007998 350 YGSVVDLLGRAGRLQEACDIVKSV----------SMGT-DMVLWQTLLGACQLYGDVE------MAEIASRKLVEMGSNN 412 (582)
Q Consensus 350 ~~~li~~~~~~g~~~~A~~~~~~~----------~~~p-~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~p~~ 412 (582)
+..+...|.+.|++++|.+.+++. ...+ ....|..+.......+... .+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888899999999999999998765 1122 2333444444443333322 2222222222223445
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998 413 CGDFVLLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 413 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
+.++..++.+|...|++++|...+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66888999999999999999999998765
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=1.9e-08 Score=94.93 Aligned_cols=205 Identities=12% Similarity=0.018 Sum_probs=137.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC-C---HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCC-HHHHH
Q 007998 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK-S---LVTWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPD-DVSYL 316 (582)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 316 (582)
+...+..+...+.+.|++++|...|+++. ..| + ...+..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45666667777788888888888887664 122 3 55677777788888888888888888776421 122 23455
Q ss_pred HHHHHHHc--------CCCHHHHHHHHHHHhHcCCccCh-hhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007998 317 AALCACNH--------AGLVDDGVRLFNSMANCGVKPNM-KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG 387 (582)
Q Consensus 317 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 387 (582)
.+..++.. .|++++|...|+++.+.. |+. .....+.... .....+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~-------~~~~~~--------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIR-------ELRAKL--------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHH-------HHHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHH-------HHHHHH--------HHHHHHHHH
Confidence 56666666 777788888877777622 221 1111111110 000000 112466778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHHhc----------CCchHHHHHHHHHHhCCCccCCcccEEE
Q 007998 388 ACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLLSNLYAAY----------ERWDDVGRVRKAMKNRDVKKVPGFSYIE 454 (582)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 454 (582)
.+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++++.+....
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~--------- 227 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD--------- 227 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT---------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC---------
Confidence 8999999999999999999999974 45788999999877 8899999999998865432
Q ss_pred ECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 007998 455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKE 488 (582)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 488 (582)
++...++...+.++...+..
T Consensus 228 --------------~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 228 --------------SPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------CTHHHHHHHHHHHHHHHHHH
T ss_pred --------------ChHHHHHHHHHHHHHHHHHH
Confidence 34456777777777666554
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=1.9e-09 Score=102.53 Aligned_cols=197 Identities=12% Similarity=-0.026 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----------
Q 007998 109 LTCSFALKACARVLALFETLQIHSHVLRH------GF-LADALLGTTLLDVYAKVGEIVSAKKVFDEMGV---------- 171 (582)
Q Consensus 109 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---------- 171 (582)
.++..+...+...|++++|.+.+..+++. +- +....++..+...|...|++++|.+.|++...
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555555556666666666666655543 11 11234555566666666666666666554421
Q ss_pred C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc-----
Q 007998 172 R-DIASWNALIAGLAQGNLASEAVDLFKRMKME------GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE----- 239 (582)
Q Consensus 172 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----- 239 (582)
+ ...+|..+...|...|++++|++.|++..+. +..+....++..+..++...|++++|...++++++.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 1 2345666666666666666666666666543 110122345666666666677777777766666543
Q ss_pred --CCCC-chhHHHHHHHHHHhcCC------HHHHHHHHhccc-C-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 240 --RLDM-NVVVCNAVIDMYAKCGL------LDKAFEVFDNIK-C-RKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 240 --~~~~-~~~~~~~li~~y~~~g~------~~~A~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
...+ ....+..+...+...+. +..+...++... . +....++..+...|...|++++|..+|++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 12222223333322222 223333333332 0 11223455566666666666666666665543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=5.9e-09 Score=100.28 Aligned_cols=193 Identities=7% Similarity=-0.016 Sum_probs=101.3
Q ss_pred HhccCCcHHHHHHHHHHHHc----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHHHHH
Q 007998 220 CGHLGAWKEGDKIHEYIREE----RLDMN-VVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTMVMA 286 (582)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~ 286 (582)
+...|++++|...+.+..+. |..++ ..+++.+..+|.+.|++++|...|++.. ...+ ..+|+.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445555555555544432 11111 3455555556666666666655555432 0011 2356666666
Q ss_pred HHhC-CChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh------hhHHhhh
Q 007998 287 FAVH-GDGPRALELFEQMGRAGV-KPD----DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM------KHYGSVV 354 (582)
Q Consensus 287 ~~~~-g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li 354 (582)
|... |++++|+..|++..+... ..+ ..++..+...+...|++++|...|++..+....... ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 7664 777777777776654210 001 235666666777777777777777777663211111 1345556
Q ss_pred hHHhhcCCHHHHHHHHHhC-CCCCCH------HHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCC
Q 007998 355 DLLGRAGRLQEACDIVKSV-SMGTDM------VLWQTLLGACQ--LYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-~~~p~~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
.+|...|++++|...+++. .+.|+. ..+..++.++. ..+++++|...|+++..++|..
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 6666777777777777665 333421 12334444443 3455666666666666665543
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=3.8e-08 Score=93.23 Aligned_cols=57 Identities=14% Similarity=0.045 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccc-CC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 249 NAVIDMYAKCGLLDKAFEVFDNIK-CR---KSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
..+..+|...|++++|++++.+.. .. -+...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345555555555555555555442 11 1333444455555555555555555555544
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=1.6e-08 Score=95.40 Aligned_cols=205 Identities=9% Similarity=-0.017 Sum_probs=145.5
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC----CHHH
Q 007998 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN--VVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK----SLVT 279 (582)
Q Consensus 207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~----~~~~ 279 (582)
+.+...+......+.+.|++++|...|+.+++...... ...+..+..+|.+.|++++|...|++.. ..| ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45677888888999999999999999999998753311 6778889999999999999999999875 122 2456
Q ss_pred HHHHHHHHHh--------CCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhH
Q 007998 280 WNTMVMAFAV--------HGDGPRALELFEQMGRAGVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY 350 (582)
Q Consensus 280 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 350 (582)
+..+..++.. .|++++|+..|++..+. .|+.. ....+ ..+..+.. -....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~----~~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRA----KLARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHH----HHHHHH
Confidence 7788888988 99999999999999885 34432 11111 11111111 001124
Q ss_pred HhhhhHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCch-
Q 007998 351 GSVVDLLGRAGRLQEACDIVKSV----SMGT-DMVLWQTLLGACQLY----------GDVEMAEIASRKLVEMGSNNCG- 414 (582)
Q Consensus 351 ~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~- 414 (582)
..+...|.+.|++++|...|+++ |..+ ....+..+..++... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 45677888889999998888776 3222 245677777777755 8899999999999999998753
Q ss_pred --hHHHHHHHHHhcCCchH
Q 007998 415 --DFVLLSNLYAAYERWDD 431 (582)
Q Consensus 415 --~~~~l~~~~~~~g~~~~ 431 (582)
+...+..++...+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 34455555555544433
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=1.8e-08 Score=96.86 Aligned_cols=155 Identities=8% Similarity=-0.106 Sum_probs=77.2
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCCCc-hHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHH
Q 007998 118 CARVLALFETLQIHSHVLRH----GFLAD-ALLGTTLLDVYAKVGEIVSAKKVFDEMGV-----RD----IASWNALIAG 183 (582)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~ 183 (582)
+...|++++|.+.+..+++. |-+++ ..+++.+..+|.+.|++++|...|++... .+ ..+|+.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555544432 11111 23455555555555555555555544321 01 2345556666
Q ss_pred HHhC-CChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCch------hHHHHHH
Q 007998 184 LAQG-NLASEAVDLFKRMKMEGVFKPN----EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV------VVCNAVI 252 (582)
Q Consensus 184 ~~~~-g~~~~A~~~~~~m~~~g~~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li 252 (582)
|... |++++|+..|++..+...-..+ ..++..+...+...|++++|...++++.+....... ..+..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6664 6666666666665543100001 234555566666666666666666666654322211 1344555
Q ss_pred HHHHhcCCHHHHHHHHhccc
Q 007998 253 DMYAKCGLLDKAFEVFDNIK 272 (582)
Q Consensus 253 ~~y~~~g~~~~A~~~~~~~~ 272 (582)
.+|...|++++|...|++..
T Consensus 207 ~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55666666666666666543
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.97 E-value=5e-08 Score=89.73 Aligned_cols=183 Identities=11% Similarity=0.027 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH----HHH
Q 007998 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS----LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD----VSY 315 (582)
Q Consensus 245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~ 315 (582)
...+..+...+.+.|++++|...|+++. ..|+ ...+..+..+|.+.|++++|+..|++..+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 4455567777888899999998888765 1232 346777888888889999999998888874 3332 133
Q ss_pred HHHHHHHHc------------------CCCHHHHHHHHHHHhHcCCccCh-hhHHhhhhHHhhcCCHHHHHHHHHhCCCC
Q 007998 316 LAALCACNH------------------AGLVDDGVRLFNSMANCGVKPNM-KHYGSVVDLLGRAGRLQEACDIVKSVSMG 376 (582)
Q Consensus 316 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 376 (582)
..+..++.. .|++++|...|+++++. .|+. ..+.++. +.+......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l~~~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RLVFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HHHHHHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HHHHHHHHH---------
Confidence 333334432 34555555555555541 1221 1111100 000000000
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007998 377 TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC---GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK 446 (582)
Q Consensus 377 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 446 (582)
......+...+...|+++.|...|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01113455678899999999999999999999875 568899999999999999999999998876543
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=1.5e-08 Score=84.08 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHh
Q 007998 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358 (582)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 358 (582)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence 34555555566666666666666555432 1233444444445555555555555555544421
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA 438 (582)
Q Consensus 359 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 438 (582)
+.+...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|...+++
T Consensus 66 -----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 66 -----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp -----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -----------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 123445555556666666666666666666666666666666666666666666666666666
Q ss_pred HHh
Q 007998 439 MKN 441 (582)
Q Consensus 439 m~~ 441 (582)
+.+
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=9.7e-10 Score=94.16 Aligned_cols=141 Identities=8% Similarity=-0.062 Sum_probs=98.4
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCH
Q 007998 285 MAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363 (582)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 363 (582)
..+...|++++|+..+.+.... .|+. ..+..+...|.+.|++++|.+.|++.++.. +-+...|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3344456666666666665442 3332 344556666777777777777777777632 23456677777777778888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998 364 QEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIA-SRKLVEMGSNNCGDFVLLSNLYAAYER 428 (582)
Q Consensus 364 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (582)
++|...|++. ...| +...|..+...+...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888777765 4445 577888888889999988766654 589999999999999988888887774
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=4.7e-08 Score=80.92 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 255 (582)
+|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 45666666777777777777777776654 4455666666666666677777777766666554 22445555666666
Q ss_pred HhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 256 AKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 256 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
.+.|++++|.+.|+++. .+.+...|..+...+...|++++|...|+++..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666543 133455566666666666666666666666554
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.91 E-value=3.3e-08 Score=94.72 Aligned_cols=173 Identities=10% Similarity=-0.028 Sum_probs=130.1
Q ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHc
Q 007998 263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANC 341 (582)
Q Consensus 263 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 341 (582)
...+.+.... +.+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++++...
T Consensus 104 ~l~~~l~~~l-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 104 AIRALLDXVL-PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444444544 555666777777788888888888888888774 44 3456777777888888888888888887763
Q ss_pred CCccChhhHHh-hhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chhH
Q 007998 342 GVKPNMKHYGS-VVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN--CGDF 416 (582)
Q Consensus 342 ~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~ 416 (582)
.|+...... ....+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ ...+
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 344332222 222356677777788877765 3344 68889999999999999999999999999999987 7899
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHH
Q 007998 417 VLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 417 ~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
..++.+|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999988887643
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.85 E-value=2.6e-07 Score=87.55 Aligned_cols=194 Identities=8% Similarity=0.032 Sum_probs=123.0
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007998 193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL-DMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271 (582)
Q Consensus 193 A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 271 (582)
|+..|++....+ +++..++..+..++...|++++|.+++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677777777665 46666667777888888888888888888766653 236777888889999999999999999887
Q ss_pred c-CCC-----CHHHHHHHHHHH--HhCC--ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHc
Q 007998 272 K-CRK-----SLVTWNTMVMAF--AVHG--DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC 341 (582)
Q Consensus 272 ~-~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 341 (582)
. ..| +..+...++.++ ...| ++.+|+.+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6 244 244455555552 2233 788888888888654 455333344444677777777777777655431
Q ss_pred CCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 342 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
.|+. ++-+- + ...|+.+...++......|+ .|.++++++.+..|+++..
T Consensus 241 --~p~~-------------~~k~~-------~-~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 241 --YYSV-------------EQKEN-------A-VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp --HHHT-------------TTCHH-------H-HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred --cccc-------------ccccc-------C-CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 0000 00000 0 01134444445444444555 6677777777777776543
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=1.9e-07 Score=100.92 Aligned_cols=182 Identities=10% Similarity=0.027 Sum_probs=148.2
Q ss_pred HhCCChhHHHHHHHHHH--------HcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007998 185 AQGNLASEAVDLFKRMK--------MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256 (582)
Q Consensus 185 ~~~g~~~~A~~~~~~m~--------~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 256 (582)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|...++++++... .+...+..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHH
Confidence 77899999999999998 443 55667888889999999999999999999998753 36788899999999
Q ss_pred hcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHH
Q 007998 257 KCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVR 333 (582)
Q Consensus 257 ~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 333 (582)
+.|++++|.+.|++.. .+.+...|..+..+|.+.|++++ ++.|++..+. .| +...+..+..++.+.|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999764 24577889999999999999999 9999999875 44 45688889999999999999999
Q ss_pred HHHHHhHcCCccC-hhhHHhhhhHHhhcC--------CHHHHHHHHHhCC
Q 007998 334 LFNSMANCGVKPN-MKHYGSVVDLLGRAG--------RLQEACDIVKSVS 374 (582)
Q Consensus 334 ~~~~~~~~~~~~~-~~~~~~li~~~~~~g--------~~~~A~~~~~~~~ 374 (582)
.|+++.+. .|+ ...+..+..+|...+ ++++|.+.+..+.
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 99988863 454 456666777776544 4777788887774
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=9.6e-08 Score=86.60 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=14.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc
Q 007998 180 LIAGLAQGNLASEAVDLFKRMKME 203 (582)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~m~~~ 203 (582)
....+.+.|++++|+..|++....
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~ 33 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL 33 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344455666666666666666554
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.83 E-value=2e-07 Score=84.70 Aligned_cols=163 Identities=9% Similarity=-0.090 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHhHcCCccChhh
Q 007998 274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG----LVDDGVRLFNSMANCGVKPNMKH 349 (582)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~~~~~ 349 (582)
..++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..+.| +...
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a 87 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSG 87 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3455556666666666666666666666665543 33444445555555 4 6667777776665533 3444
Q ss_pred HHhhhhHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhHH
Q 007998 350 YGSVVDLLGR----AGRLQEACDIVKSV-SMGTD---MVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSNNCGDFV 417 (582)
Q Consensus 350 ~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 417 (582)
+..|..+|.. .+++++|.+.|++. ...|+ +..+..|...|.. .+++++|...|++..+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 5555555655 66777777777765 33332 6677777777776 77888888888888887 55667788
Q ss_pred HHHHHHHhc-C-----CchHHHHHHHHHHhCCC
Q 007998 418 LLSNLYAAY-E-----RWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 418 ~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 444 (582)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888888754 3 78888888888776653
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.82 E-value=4.5e-06 Score=79.80 Aligned_cols=229 Identities=8% Similarity=-0.008 Sum_probs=156.4
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC--CcHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc
Q 007998 185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG--AWKEGDKIHEYIREERLDMNVVVCNAVIDMY----AKC 258 (582)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~ 258 (582)
.+....++|++++++++... +-+...|+.-..++...+ +++++...++.++....+ +..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 33444568888888888775 555666777777777777 888888888888887544 556666555555 455
Q ss_pred ---CCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChh--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC----
Q 007998 259 ---GLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGP--RALELFEQMGRAGVKPDDVSYLAALCACNHAGL---- 327 (582)
Q Consensus 259 ---g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 327 (582)
++++++.++++.+. .+++..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.-.....+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 67888888888765 4667888888888888888888 8889888888764 2355666665555666655
Q ss_pred --HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChHHHH
Q 007998 328 --VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE-ACDIVKSV-SM----GTDMVLWQTLLGACQLYGDVEMAE 399 (582)
Q Consensus 328 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~ 399 (582)
++++.+.++.++... +-|...|+-+-..+.+.|+..+ +.++.+++ .. ..+...+..+...+.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 777777777777632 3455666666666666666433 44455544 11 236667777777777777777777
Q ss_pred HHHHHHHH-cCCCCchhHHH
Q 007998 400 IASRKLVE-MGSNNCGDFVL 418 (582)
Q Consensus 400 ~~~~~~~~-~~p~~~~~~~~ 418 (582)
++++.+.+ .+|.....+..
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHH
Confidence 77777775 57765554443
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=8.6e-08 Score=92.79 Aligned_cols=218 Identities=14% Similarity=0.044 Sum_probs=142.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007998 187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH-LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265 (582)
Q Consensus 187 ~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 265 (582)
.|++++|.+++++..+.. +.. +.. .++++.|...|.++ ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 456777777777765542 211 111 35666666665543 45667778888877
Q ss_pred HHHhccc----CCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhcC---CCCC--HHHHHHHHHHHHcCCCHHHHH
Q 007998 266 EVFDNIK----CRKS----LVTWNTMVMAFAVHGDGPRALELFEQMGRAG---VKPD--DVSYLAALCACNHAGLVDDGV 332 (582)
Q Consensus 266 ~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~ 332 (582)
..|.+.. ...+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 7776543 0111 3467778888888888888888888765421 1122 2467777778877 9999999
Q ss_pred HHHHHHhH-c---CCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHH
Q 007998 333 RLFNSMAN-C---GVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV----SMGTD----MVLWQTLLGACQLYGDVEMAE 399 (582)
Q Consensus 333 ~~~~~~~~-~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~ 399 (582)
..|++..+ . +-.+ ...++..+...|.+.|++++|.+.|++. +..++ ...+..+...+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99988876 2 1111 1356777888899999999999888765 11122 235666667777889999999
Q ss_pred HHHHHHHHcCCCCchh-----HHHHHHHHHhcCCchHHHH
Q 007998 400 IASRKLVEMGSNNCGD-----FVLLSNLYAAYERWDDVGR 434 (582)
Q Consensus 400 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 434 (582)
..+++.+ ..|....+ ...++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 88864432 33455555 5666655554
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=5.8e-08 Score=102.85 Aligned_cols=160 Identities=12% Similarity=0.034 Sum_probs=125.3
Q ss_pred cCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHH
Q 007998 258 CGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRL 334 (582)
Q Consensus 258 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 334 (582)
.|++++|.+.|++.. .+.+...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999998765 2446788999999999999999999999999875 44 467888899999999999999999
Q ss_pred HHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcC
Q 007998 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY---GDVEMAEIASRKLVEMG 409 (582)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 409 (582)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99999843 335678888999999999999999999886 3344 678899999999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 007998 410 SNNCGDFVLLS 420 (582)
Q Consensus 410 p~~~~~~~~l~ 420 (582)
|.+...|..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=3.7e-08 Score=86.70 Aligned_cols=157 Identities=9% Similarity=-0.010 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 007998 248 CNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA 325 (582)
Q Consensus 248 ~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 325 (582)
...+...+.+.|++++|...|++.. .+.+...|..+...|...|++++|+..|++.... .|+...+ .+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~---- 81 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAK---- 81 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHH----
Confidence 3344555556666666666665543 1234455555555566666666666655555432 2222111 11100
Q ss_pred CCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 007998 326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASR 403 (582)
Q Consensus 326 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 403 (582)
+. +...+...+|.+.+++. ...| +...+..+...+...|++++|...++
T Consensus 82 ----------------------------~~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 82 ----------------------------LE-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp ----------------------------HH-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------------------HH-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 00 01111112344455443 2344 57888888889999999999999999
Q ss_pred HHHHcCCCC--chhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 404 KLVEMGSNN--CGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 404 ~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 999999864 5588899999999999999998888654
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=8.5e-08 Score=101.57 Aligned_cols=148 Identities=10% Similarity=-0.081 Sum_probs=107.8
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 007998 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELF 300 (582)
Q Consensus 223 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 300 (582)
.|++++|...++++++.. +.+...+..+...|.+.|++++|.+.|++.. .+.+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478889999999888764 3357888899999999999999999998764 2446788999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhc---CCHHHHHHHHHhC
Q 007998 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA---GRLQEACDIVKSV 373 (582)
Q Consensus 301 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 373 (582)
++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...|... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9988752 2345688888899999999999999999998843 23567778888899999 9999999998876
No 106
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.78 E-value=2.2e-05 Score=80.98 Aligned_cols=182 Identities=9% Similarity=-0.081 Sum_probs=103.1
Q ss_pred CCHHHHHHHHhcCC--CCChhHHHHHHHHHHcCCC-chHHHHHHHHHHhC-CCCC-ChhHHHHHHHHHH----hcCChHH
Q 007998 56 NELAYAHALFRQIN--APSTNDFNAVLRGLAHSSK-PTNAVLWYRQMLRG-SHRS-DALTCSFALKACA----RVLALFE 126 (582)
Q Consensus 56 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~~~~~ll~~~~----~~~~~~~ 126 (582)
|+++.++.+|++.. .|++..|...+....+.++ .+....+|+..+.. |..| +...|..-+..+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 67889999998854 4799999988887776653 45567788877654 4333 4456666555433 2456888
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHh-------------cCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCC
Q 007998 127 TLQIHSHVLRHGFLADALLGTTLLDVYAK-------------VGEIVSAKKVFDEMG----VRDIASWNALIAGLAQGNL 189 (582)
Q Consensus 127 a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~ 189 (582)
++.+|+.+++.....-..+|......-.. .+.+..|+.+++.+. ..+...|...+.--..++.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 99999999874222112233322221111 111222333332221 1133455554443222211
Q ss_pred -------hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc
Q 007998 190 -------ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239 (582)
Q Consensus 190 -------~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 239 (582)
.+.+..+|++++... +.+...|...+.-+.+.|+.+.|..++++.+..
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 234566777766653 455666666666666777777777777777776
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=1.2e-07 Score=102.47 Aligned_cols=169 Identities=10% Similarity=-0.026 Sum_probs=109.6
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhC
Q 007998 119 ARVLALFETLQIHSHVL--------RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQG 187 (582)
Q Consensus 119 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~ 187 (582)
...|++++|.+.++.++ +.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|+.+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677777777777776 332 3345566667777777777777777777654 23566777777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007998 188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV 267 (582)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 267 (582)
|++++|++.|++..+.. +.+...+..+..++.+.|++++ .+.++++++.... +...+..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777664 4456667777777777777777 7777777766432 556666777777777777777777
Q ss_pred Hhccc-CCC-CHHHHHHHHHHHHhCCC
Q 007998 268 FDNIK-CRK-SLVTWNTMVMAFAVHGD 292 (582)
Q Consensus 268 ~~~~~-~~~-~~~~~~~li~~~~~~g~ 292 (582)
|++.. ..| +...|..+..++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 77654 223 24455555555544443
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.74 E-value=3.9e-08 Score=83.84 Aligned_cols=97 Identities=11% Similarity=-0.002 Sum_probs=85.1
Q ss_pred hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456667777888889999999888876 3445 78899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 007998 425 AYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 425 ~~g~~~~a~~~~~~m~~~~ 443 (582)
..|++++|...+++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999888754
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=3.2e-07 Score=80.64 Aligned_cols=155 Identities=14% Similarity=0.002 Sum_probs=98.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-Hh
Q 007998 146 GTTLLDVYAKVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA-CG 221 (582)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a-~~ 221 (582)
...+...+.+.|++++|...|++... .+...|..+...+.+.|++++|+..|++..... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHHH
Confidence 44556667777777777777777653 356677777777777888888888777776553 344333222111 11
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC---HHHHHHHHHHHHhCCChhHHH
Q 007998 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS---LVTWNTMVMAFAVHGDGPRAL 297 (582)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~---~~~~~~li~~~~~~g~~~~A~ 297 (582)
..+....+...+++.++... .+...+..+...|.+.|++++|...|+++. ..|+ ...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233345666777666542 256677777777777777777777777654 2232 446777777777777777777
Q ss_pred HHHHHHH
Q 007998 298 ELFEQMG 304 (582)
Q Consensus 298 ~~~~~m~ 304 (582)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.73 E-value=5.1e-07 Score=81.74 Aligned_cols=137 Identities=9% Similarity=-0.044 Sum_probs=98.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007998 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA 256 (582)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 256 (582)
++.+...|.+.|++++|+..|++..+.. |.+...+..+..++...|++++|...++++++..+ .+...+..+...|.
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3457777888888888888888888775 56777888888888888888888888888888753 35777778888776
Q ss_pred hcCC--HHHHHHHHhcccCCCCHH--HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007998 257 KCGL--LDKAFEVFDNIKCRKSLV--TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319 (582)
Q Consensus 257 ~~g~--~~~A~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 319 (582)
..|+ .+.+...|.... .|+.. .|..+..++...|++++|+..|++..+ ..|+......+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 6554 455677777766 55543 344456667778899999999999886 467765544433
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=5.7e-07 Score=85.99 Aligned_cols=156 Identities=12% Similarity=-0.003 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHH-HHHHHH
Q 007998 144 LLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV-LGALAA 219 (582)
Q Consensus 144 ~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~-~~ll~a 219 (582)
..+..+...+.+.|++++|...|++.. ..+...+..+...+.+.|++++|+..|++.... .|+.... ......
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHHHHH
Confidence 333444444444444444444444432 123344444444445555555555554444333 2222211 111122
Q ss_pred HhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC---HHHHHHHHHHHHhCCChhH
Q 007998 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS---LVTWNTMVMAFAVHGDGPR 295 (582)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~---~~~~~~li~~~~~~g~~~~ 295 (582)
+...++.+.|...+++.++.. +.+...+..+...|...|++++|...|.++. ..|+ ...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 334444444444454444443 1234445555555555555555555555443 1121 3445555555555555555
Q ss_pred HHHHHHHH
Q 007998 296 ALELFEQM 303 (582)
Q Consensus 296 A~~~~~~m 303 (582)
|...|++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=1.1e-07 Score=78.46 Aligned_cols=108 Identities=12% Similarity=0.013 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007998 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQL 391 (582)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 391 (582)
.+......+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555556666666666666666666522 234455556666666666666666666654 2233 56677777888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422 (582)
Q Consensus 392 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 422 (582)
.|++++|.+.|+++++++|+++.++..|.++
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8888888888888888888887777666554
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.70 E-value=5.1e-08 Score=83.06 Aligned_cols=98 Identities=9% Similarity=-0.018 Sum_probs=84.4
Q ss_pred ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 346 NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423 (582)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (582)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4456666778888899999999988876 3344 7888999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 007998 424 AAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 424 ~~~g~~~~a~~~~~~m~~~~ 443 (582)
...|++++|...+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999887643
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.70 E-value=9.3e-08 Score=81.63 Aligned_cols=108 Identities=4% Similarity=-0.204 Sum_probs=48.3
Q ss_pred HHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHH
Q 007998 153 YAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG 229 (582)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a 229 (582)
+...|++++|...|...... +...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHH
Confidence 33444444444444444322 12233444444555555555555555544443 33444444444444444444444
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007998 230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263 (582)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 263 (582)
...++..++.... +..++..+...|.+.|+.++
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHH
Confidence 4444444443211 33444444444444444433
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=9.7e-07 Score=80.18 Aligned_cols=160 Identities=9% Similarity=-0.001 Sum_probs=89.1
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC----CcHHHHHHHHHHHHcCCCCchhHH
Q 007998 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG----AWKEGDKIHEYIREERLDMNVVVC 248 (582)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 248 (582)
+..++..+...|...+++++|++.|++..+.| ++..+..+...+.. + +.++|...+++..+.| +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44555555555555556666666666555443 23444445555554 4 5666666666665543 44455
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhcccCCCC----HHHHHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007998 249 NAVIDMYAK----CGLLDKAFEVFDNIKCRKS----LVTWNTMVMAFAV----HGDGPRALELFEQMGRAGVKPDDVSYL 316 (582)
Q Consensus 249 ~~li~~y~~----~g~~~~A~~~~~~~~~~~~----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 316 (582)
..|..+|.. .+++++|.+.|++.....+ ..++..|...|.. .+++++|+..|++..+. .++...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 556666655 5666666666665541222 4566666666666 56667777777766654 12233444
Q ss_pred HHHHHHHcC-C-----CHHHHHHHHHHHhHcC
Q 007998 317 AALCACNHA-G-----LVDDGVRLFNSMANCG 342 (582)
Q Consensus 317 ~ll~a~~~~-g-----~~~~a~~~~~~~~~~~ 342 (582)
.+...|... | ++++|...|+...+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 454455432 2 6677777776666644
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=1.1e-06 Score=84.31 Aligned_cols=158 Identities=9% Similarity=0.004 Sum_probs=108.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcC-CCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHHhHcCC-ccC----hhhHHh
Q 007998 283 MVMAFAVHGDGPRALELFEQMGRAG-VKPDDV----SYLAALCACNHAGLVDDGVRLFNSMANCGV-KPN----MKHYGS 352 (582)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ 352 (582)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...|+++.+... .++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677777777777777776532 122221 223355556666777888888877776211 222 225677
Q ss_pred hhhHHhhcCCHHHHHHHHHhC-------CCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhHH
Q 007998 353 VVDLLGRAGRLQEACDIVKSV-------SMG-T-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN------CGDFV 417 (582)
Q Consensus 353 li~~~~~~g~~~~A~~~~~~~-------~~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 417 (582)
+...|...|++++|.+.++++ +.. + ...+|..+...|...|++++|...++++++..+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777788888888887777654 111 1 23477888899999999999999999998865322 56889
Q ss_pred HHHHHHHhcCC-chHHHHHHHHHH
Q 007998 418 LLSNLYAAYER-WDDVGRVRKAMK 440 (582)
Q Consensus 418 ~l~~~~~~~g~-~~~a~~~~~~m~ 440 (582)
.++.+|.+.|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 599999888765
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.68 E-value=2.3e-05 Score=74.82 Aligned_cols=215 Identities=6% Similarity=-0.056 Sum_probs=132.8
Q ss_pred cCCCchHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCchHHHHHHHHHH----Hhc-
Q 007998 85 HSSKPTNAVLWYRQMLRGSHRSDAL-TCSFALKACARVL--ALFETLQIHSHVLRHGFLADALLGTTLLDVY----AKV- 156 (582)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~- 156 (582)
.....++|+++++.++.. .|+.. .|+.--..+...+ +++++++.++.++...+. +..+|+.--.++ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 334446888888888874 44443 4666666666777 888888888888887533 445555444444 444
Q ss_pred --CCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChh--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC----
Q 007998 157 --GEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLAS--EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA---- 225 (582)
Q Consensus 157 --g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~---- 225 (582)
++++++.++++++. .+|-.+|+--...+.+.|.++ ++++.++++.+.. +-|...|+.......+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchh
Confidence 67777777777664 346667777777777777777 7777777777765 4566667666666655554
Q ss_pred --cHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH-HHHHHhccc--C---CCCHHHHHHHHHHHHhCCChhHHH
Q 007998 226 --WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK-AFEVFDNIK--C---RKSLVTWNTMVMAFAVHGDGPRAL 297 (582)
Q Consensus 226 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~~~--~---~~~~~~~~~li~~~~~~g~~~~A~ 297 (582)
++++.+.+..++...+. |...|+-+-..+.+.|+..+ +..+.+++. . .++...+..+...|.+.|+.++|+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 56666666666665432 56666666666666665333 333444332 0 224455555555555555666666
Q ss_pred HHHHHHHh
Q 007998 298 ELFEQMGR 305 (582)
Q Consensus 298 ~~~~~m~~ 305 (582)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655543
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=2.5e-07 Score=89.53 Aligned_cols=163 Identities=8% Similarity=-0.064 Sum_probs=81.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200 (582)
Q Consensus 121 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 200 (582)
.|++++|.+++++..+.... . .+...++++.|...|++. ...|...|++++|.+.|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 35566666666666553211 0 011135666666665542 45566677777777777665
Q ss_pred HHcCCC--CC--CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCC---CC--chhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007998 201 KMEGVF--KP--NEVTVLGALAACGHLGAWKEGDKIHEYIREERL---DM--NVVVCNAVIDMYAKCGLLDKAFEVFDNI 271 (582)
Q Consensus 201 ~~~g~~--~p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~ 271 (582)
.....- .+ -..+|..+..++...|++++|...+++.++.-. .+ ...+++.+...|.+ |++++|...|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 432100 01 123555566666666666666666665543210 01 12344455555555 5555555555543
Q ss_pred c----CCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 272 K----CRKS----LVTWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 272 ~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
. ...+ ..+++.+...|...|++++|+..|++..+
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 0000 23444555555555555555555555443
No 119
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=3e-06 Score=87.43 Aligned_cols=336 Identities=8% Similarity=-0.046 Sum_probs=185.0
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 007998 58 LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA-LFETLQIHSHVLR 136 (582)
Q Consensus 58 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~ 136 (582)
++.|+.+|++.. ..+-. |+++.+..+|++.+.. .|+...|..-++...+.++ .+....+|+.++.
T Consensus 11 i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~ 76 (493)
T 2uy1_A 11 LSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLG 76 (493)
T ss_dssp -CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHH
T ss_pred hHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 666666666542 11111 7888999999988874 4677788777776665553 3556777777776
Q ss_pred c-CCC-CchHHHHHHHHHHH----hcCCHHHHHHHHhhcCC-C--Ch-hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 007998 137 H-GFL-ADALLGTTLLDVYA----KVGEIVSAKKVFDEMGV-R--DI-ASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206 (582)
Q Consensus 137 ~-g~~-~~~~~~~~li~~y~----~~g~~~~A~~~f~~m~~-~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 206 (582)
. |.. .+..+|...+..+. ..++++.+.++|++... | +. ..|...... .+......+.++..+.
T Consensus 77 ~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~------ 149 (493)
T 2uy1_A 77 QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT------ 149 (493)
T ss_dssp HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH------
T ss_pred HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH------
Confidence 4 432 35567777666544 24567778888877632 2 11 122222111 1111111122211111
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--C-----HHHHHHHHhccc--CCCCH
Q 007998 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG--L-----LDKAFEVFDNIK--CRKSL 277 (582)
Q Consensus 207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~-----~~~A~~~~~~~~--~~~~~ 277 (582)
.+.+..|+.++..+...-...+...|...++.-...+ - .+.+..+|++.. .+.+.
T Consensus 150 ----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~ 213 (493)
T 2uy1_A 150 ----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE 213 (493)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred ----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH
Confidence 1123334444444332100113335555554432221 1 234556776654 34567
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-c---C-----C---cc
Q 007998 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-C---G-----V---KP 345 (582)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~---~-----~---~~ 345 (582)
..|-..+.-+.+.|+.++|..+|++.... |+...+.. +|......++ +++.+.+ . . . ..
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHHTC----------CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHHHHHhhccchhhhhcccc
Confidence 77888888888888888888888888876 44432211 1221111111 1222222 1 0 0 01
Q ss_pred ChhhHHhhhhHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMG-TDMVLWQTLLGACQL-YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423 (582)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (582)
....|...++.+.+.+.++.|.++|++.... .+..+|......-.. .++.+.|..+|+.+++..|+++..+...++..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1245666677777778888999998877211 234445432222222 23688999999999888887777667777777
Q ss_pred HhcCCchHHHHHHHHH
Q 007998 424 AAYERWDDVGRVRKAM 439 (582)
Q Consensus 424 ~~~g~~~~a~~~~~~m 439 (582)
.+.|+.+.|+.++++.
T Consensus 365 ~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 365 LRIGDEENARALFKRL 380 (493)
T ss_dssp HHHTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8888889999888876
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=5.3e-07 Score=81.68 Aligned_cols=123 Identities=9% Similarity=-0.007 Sum_probs=84.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 007998 318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDV 395 (582)
Q Consensus 318 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 395 (582)
+...+...|++++|...|++.. .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 3444455566666665555542 344555556666666666666666666554 2222 566777788888888888
Q ss_pred HHHHHHHHHHHHcCCCCc----------------hhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 396 EMAEIASRKLVEMGSNNC----------------GDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 396 ~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
++|...++++++..|.+. ..+..++.+|...|++++|...+++..+...
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 888888888888777766 7888888888888888888888888876543
No 121
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.64 E-value=1.8e-06 Score=79.20 Aligned_cols=59 Identities=10% Similarity=-0.133 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 007998 145 LGTTLLDVYAKVGEIVSAKKVFDEMGV--RD----IASWNALIAGLAQGNLASEAVDLFKRMKME 203 (582)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 203 (582)
.+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|++.|++..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344455566667777777777766532 21 235666666777777777777777776655
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=1.1e-06 Score=84.36 Aligned_cols=162 Identities=8% Similarity=-0.022 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CH----HHHHHHHHHHHcCCCHHHHHHHHHHHhHcC---CccC--hh
Q 007998 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DD----VSYLAALCACNHAGLVDDGVRLFNSMANCG---VKPN--MK 348 (582)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~--~~ 348 (582)
.+...+..+...|++++|++.+.+..+..... +. ..+..+...+...|++++|...+++..+.. ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34445556666777777777776665532111 11 122334445566777777777777766511 1111 34
Q ss_pred hHHhhhhHHhhcCCHHHHHHHHHhC-------CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------Cc
Q 007998 349 HYGSVVDLLGRAGRLQEACDIVKSV-------SMGT--DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN------NC 413 (582)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 413 (582)
.|+.+...|...|++++|.+.+++. +..+ ...++..+...|...|++++|...++++++..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6667777777788888777777654 2111 1257888889999999999999999998876431 15
Q ss_pred hhHHHHHHHHHhcCCchHH-HHHHHHHH
Q 007998 414 GDFVLLSNLYAAYERWDDV-GRVRKAMK 440 (582)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 440 (582)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77677654
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=1.7e-07 Score=89.32 Aligned_cols=192 Identities=7% Similarity=-0.046 Sum_probs=120.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHH
Q 007998 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALC 320 (582)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 320 (582)
+...+..+...|.+.|++++|...|++.. .+.+...|..+...|...|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34556666677777777777777777543 2346677777777777777777887777777663 34 3456677777
Q ss_pred HHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007998 321 ACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 399 (582)
++...|++++|...|++..+.. |+ ...+...+....+..+...... .......++......+ ..+ ..|+.++|.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 7778888888888887777621 21 1112222222222111111111 2222323344443333 222 268899999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 007998 400 IASRKLVEMGSNNCGDFVLLSNLYAAY-ERWDDVGRVRKAMKNR 442 (582)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 442 (582)
+.++++++++|++......+...+.+. +++++|.++|....+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998777777777777766 7789999999887653
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=2.2e-07 Score=76.63 Aligned_cols=101 Identities=10% Similarity=0.120 Sum_probs=89.7
Q ss_pred CccC-hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998 343 VKPN-MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419 (582)
Q Consensus 343 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 419 (582)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 356677888999999999999999986 4445 788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCC
Q 007998 420 SNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 420 ~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
+.+|...|++++|.+.+++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999887654
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=1e-06 Score=71.64 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 007998 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SM-GTDMVLWQTLLGACQ 390 (582)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~ 390 (582)
..+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|...++++ .. ..+..+|..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344445555555566666666665555521 223445555666666666666666666654 11 236677888888899
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 007998 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427 (582)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (582)
..|++++|...++++++..|.++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999988888888888776554
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.58 E-value=9.9e-07 Score=76.08 Aligned_cols=126 Identities=7% Similarity=0.001 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007998 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQL 391 (582)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 391 (582)
.+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444555556666666666666665522 224555666666677777777777776654 2223 57788888889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHH--HHhcCCchHHHHHHHHHH
Q 007998 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNL--YAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 392 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 440 (582)
.|++++|...++++++.+|.++..+..+..+ +...|++++|...++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999888777544444 778899999999888664
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.57 E-value=4.2e-07 Score=76.62 Aligned_cols=97 Identities=13% Similarity=-0.031 Sum_probs=82.1
Q ss_pred hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345556677788888899998888876 3344 78888889999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 007998 425 AYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 425 ~~g~~~~a~~~~~~m~~~~ 443 (582)
..|++++|...+++..+..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887543
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=1.3e-05 Score=76.75 Aligned_cols=193 Identities=12% Similarity=-0.061 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhH---HHHHHHHHHhcCCHHHHHHHHhcccC-C---CCH--
Q 007998 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV---CNAVIDMYAKCGLLDKAFEVFDNIKC-R---KSL-- 277 (582)
Q Consensus 207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~~~~-~---~~~-- 277 (582)
.|+..++..+...+.-.- + .+.......+... +...+..+...|++++|...+++... . ++.
T Consensus 43 ~~~~~~l~~i~~~l~~~~--~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~ 113 (293)
T 3u3w_A 43 YPSMDILQGIAAKLQIPI--I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ 113 (293)
T ss_dssp CCCHHHHHHHHHHHTCCT--H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCHHHHHHHHHHhCcCH--H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH
Confidence 677777766666553221 1 1122212222222 23346778889999999999987651 1 121
Q ss_pred --HHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHhH--c---CCcc
Q 007998 278 --VTWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPD----DVSYLAALCACNHAGLVDDGVRLFNSMAN--C---GVKP 345 (582)
Q Consensus 278 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~--~---~~~~ 345 (582)
..+..+...+...|++++|+..|++..+... .++ ..+++.+..+|...|++++|..+|+++.+ . +..+
T Consensus 114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (293)
T 3u3w_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh
Confidence 1333466677778899999999999987322 223 23688888999999999999999999885 1 2222
Q ss_pred C-hhhHHhhhhHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc
Q 007998 346 N-MKHYGSVVDLLGRAGRLQEACDIVKSV-------SMGTD-MVLWQTLLGACQLYGD-VEMAEIASRKLVEM 408 (582)
Q Consensus 346 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~ 408 (582)
. ..++..+...|.+.|++++|.+.+++. +..+. ..+|..+..++...|+ +++|.+.+++++++
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 2 346778889999999999999988765 22222 6788889999999995 69999999998764
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=2.7e-06 Score=76.91 Aligned_cols=142 Identities=11% Similarity=-0.080 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC
Q 007998 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225 (582)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~ 225 (582)
+..+...|.+.|++++|...|++...++...|..+...|.+.|++++|++.|++..... +.+...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHccc
Confidence 44556667777777777777777776677777777777777777777777777777664 4556666677777777777
Q ss_pred cHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
+++|...++...+.........+ ...|. ... +.....|..+...|...|++++|+..|++..+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~-------~~~~~---------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDY-------KILGL---------QFK-LFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEEC-------GGGTB---------CCE-EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCccHHHH-------HHhcc---------ccC-ccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777766664322110000 00000 000 11235666677777777777777777777766
Q ss_pred c
Q 007998 306 A 306 (582)
Q Consensus 306 ~ 306 (582)
.
T Consensus 150 ~ 150 (213)
T 1hh8_A 150 M 150 (213)
T ss_dssp T
T ss_pred c
Confidence 3
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=1.1e-06 Score=72.10 Aligned_cols=117 Identities=9% Similarity=-0.046 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007998 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQ 390 (582)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 390 (582)
..+..+...+...|++++|...+++..... +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 344555555666666666666666665522 224455566666667777777777776654 2223 5778888888999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCch
Q 007998 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430 (582)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (582)
..|++++|...++++++.+|.++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999889999999998888753
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=5.7e-07 Score=88.15 Aligned_cols=94 Identities=12% Similarity=-0.009 Sum_probs=79.9
Q ss_pred hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356777888888888888888888776 3334 68889999999999999999999999999999999999999999999
Q ss_pred hcCCchHH-HHHHHHHH
Q 007998 425 AYERWDDV-GRVRKAMK 440 (582)
Q Consensus 425 ~~g~~~~a-~~~~~~m~ 440 (582)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44566553
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=1.1e-06 Score=72.56 Aligned_cols=114 Identities=11% Similarity=-0.005 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007998 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQL 391 (582)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 391 (582)
.+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 33344444444444444444444444311 113344444555555555555555555543 1122 56778888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER 428 (582)
Q Consensus 392 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (582)
.|++++|...++++++.+|.+...+..++.++...|+
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999888888888888877664
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=4e-06 Score=78.38 Aligned_cols=99 Identities=12% Similarity=-0.096 Sum_probs=54.2
Q ss_pred HHHcCCCHHHHHHHHHHHhHcCCccC--hhhHHhhhhHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcC
Q 007998 321 ACNHAGLVDDGVRLFNSMANCGVKPN--MKHYGSVVDLLGRAGRLQEACDIVKSV---SMGTD--MVLWQTLLGACQLYG 393 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g 393 (582)
.+.+.+++++|+..|+...... .|. ...+..+..++.+.|++++|++.|++. +..|. ...+.....++...|
T Consensus 144 l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC
Confidence 4445555555555554333311 111 123344555566666666666666554 11132 234555666677777
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998 394 DVEMAEIASRKLVEMGSNNCGDFVLLSN 421 (582)
Q Consensus 394 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 421 (582)
+.++|...|+++...+|+ +.....|.+
T Consensus 223 r~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 223 NESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp CHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 777788888877777776 555555543
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=4.7e-07 Score=79.47 Aligned_cols=119 Identities=7% Similarity=0.050 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--HHHH
Q 007998 325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGA-CQLYGDV--EMAE 399 (582)
Q Consensus 325 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~~a~ 399 (582)
.|++++|...++...+.. +.+...+..+...|...|++++|.+.|++. ...| +...|..+... +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 455555555555555422 223455555666666666666666666554 2222 55666666666 6677777 8888
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
..++++++.+|.++..+..++.+|...|++++|...+++..+...
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 888888888888888888888888888888888888887776543
No 135
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=0.00011 Score=71.10 Aligned_cols=182 Identities=9% Similarity=0.017 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDM 254 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 254 (582)
.++.+-....+.+..++|++++++++... +-+...|+.--.++...+ .++++..+++.++....+ +..+|+.-...
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wl 132 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 34444444455566678888888888775 556666777777777777 488888888888877544 67777777777
Q ss_pred HHhc-C-CHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChh--------HHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007998 255 YAKC-G-LLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGP--------RALELFEQMGRAGVKPDDVSYLAALCAC 322 (582)
Q Consensus 255 y~~~-g-~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 322 (582)
+.+. + ++++++++++++. .+.|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 6666 6 7788888888775 3456677776666655555555 7888888887753 23556666666666
Q ss_pred HcCCC-------HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCC
Q 007998 323 NHAGL-------VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR 362 (582)
Q Consensus 323 ~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 362 (582)
.+.+. ++++.+++++++... +-|...|+-+-..+.+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 66654 566666666666522 2344555554444544443
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.47 E-value=1.7e-06 Score=68.85 Aligned_cols=99 Identities=13% Similarity=0.028 Sum_probs=85.0
Q ss_pred ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CchhHHHHHH
Q 007998 346 NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN--NCGDFVLLSN 421 (582)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 421 (582)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4556777888888899999999888876 2233 6788888999999999999999999999999999 8999999999
Q ss_pred HHHhc-CCchHHHHHHHHHHhCCC
Q 007998 422 LYAAY-ERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 422 ~~~~~-g~~~~a~~~~~~m~~~~~ 444 (582)
+|... |++++|.+.++...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998887654
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=9.8e-07 Score=79.09 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=34.8
Q ss_pred cCCHHHHHH---HHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCCCHHHHHHHHHHHhccCCcHH
Q 007998 156 VGEIVSAKK---VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME----GVFKPNEVTVLGALAACGHLGAWKE 228 (582)
Q Consensus 156 ~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~pd~~t~~~ll~a~~~~~~~~~ 228 (582)
.|++++|.+ .+..-+.....+++.+...|...|++++|+..|++.... +..+....++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 444555555 333322223344555555555555555555555554431 1001112234444444444455555
Q ss_pred HHHHHHHHH
Q 007998 229 GDKIHEYIR 237 (582)
Q Consensus 229 a~~~~~~~~ 237 (582)
|...+.+.+
T Consensus 85 A~~~~~~al 93 (203)
T 3gw4_A 85 ARRCFLEER 93 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444433
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=8.7e-07 Score=72.79 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=77.4
Q ss_pred hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 007998 348 KHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425 (582)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (582)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555666777788888888887765 3334 678888888888899999999999999999999888899999999999
Q ss_pred cCCchHHHHHHHHHHhCC
Q 007998 426 YERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 426 ~g~~~~a~~~~~~m~~~~ 443 (582)
.|++++|...+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 999999999888877543
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=1e-05 Score=77.44 Aligned_cols=126 Identities=12% Similarity=0.062 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH------HHHHHHHHHhccCCcHHHHHHHHHHHHcCCC---Cc--
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV------TVLGALAACGHLGAWKEGDKIHEYIREERLD---MN-- 244 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~------t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~---~~-- 244 (582)
.+...+..+...|++++|++.+.+..+... .+.. .+..+...+...|++++|...+.+..+.... +.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEE--YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcccc--CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 444556677778888888888777766532 2221 1222333344445555555555544432111 00
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS-----LVTWNTMVMAFAVHGDGPRALELFEQM 303 (582)
Q Consensus 245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (582)
..+++.+...|...|++++|...|++.. ..++ ..+|+.+...|...|++++|+..+++.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 2244444445555555555544444321 0111 124444444444444444444444444
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.44 E-value=6e-06 Score=71.02 Aligned_cols=94 Identities=6% Similarity=-0.054 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254 (582)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 254 (582)
..|..+...+...|++++|+..|.+..+.. +.+..++..+..++...|++++|...+.+.++.. +.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345555666666666666666666665553 3445555555555555566666666555555543 2234444455555
Q ss_pred HHhcCCHHHHHHHHhcc
Q 007998 255 YAKCGLLDKAFEVFDNI 271 (582)
Q Consensus 255 y~~~g~~~~A~~~~~~~ 271 (582)
|.+.|++++|...|++.
T Consensus 91 ~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 91 NMALGKFRAALRDYETV 107 (166)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHH
Confidence 55555555555555443
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=3.8e-06 Score=78.51 Aligned_cols=183 Identities=10% Similarity=-0.030 Sum_probs=134.2
Q ss_pred hcCCHHHHHHHHhccc--CCCCHHHHHHH-------HHHHHhCCChhHHHHHHHHHHhcCCCCCH---------------
Q 007998 257 KCGLLDKAFEVFDNIK--CRKSLVTWNTM-------VMAFAVHGDGPRALELFEQMGRAGVKPDD--------------- 312 (582)
Q Consensus 257 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 312 (582)
..++.+.|.+.|.+.. .+.....|+.+ ...+...++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4678888888887664 24556778777 4555555556666666655443 22221
Q ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCH----HH
Q 007998 313 -------VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM----VL 381 (582)
Q Consensus 313 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~~ 381 (582)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.....|+. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 123345567788999999999998887633 43335555667899999999999999977433433 36
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC--CC-CchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 382 WQTLLGACQLYGDVEMAEIASRKLVEMG--SN-NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 382 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
+..+..++...|++++|+..|++..... |. .+.....++.++.+.|+.++|...|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7788899999999999999999998543 43 44577899999999999999999999998754
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=1.5e-06 Score=77.93 Aligned_cols=150 Identities=13% Similarity=-0.005 Sum_probs=69.3
Q ss_pred hcCCHHHHHH---HHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHcCCCH
Q 007998 257 KCGLLDKAFE---VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA----GVKPD-DVSYLAALCACNHAGLV 328 (582)
Q Consensus 257 ~~g~~~~A~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~ 328 (582)
..|++++|.+ .+..-+ .....++..+...|...|++++|+..+++.... +..|. ..++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 3556666666 333222 234455666666666666666666666665441 11111 23455555556666666
Q ss_pred HHHHHHHHHHhHc-CCcc-C----hhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCC
Q 007998 329 DDGVRLFNSMANC-GVKP-N----MKHYGSVVDLLGRAGRLQEACDIVKSV----SMGTD----MVLWQTLLGACQLYGD 394 (582)
Q Consensus 329 ~~a~~~~~~~~~~-~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~ 394 (582)
++|...+++..+. .-.+ + ...+..+...+...|++++|.+.+++. +..++ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666555541 1011 1 123344444455555555555444432 00011 1223444444555555
Q ss_pred hHHHHHHHHHHHH
Q 007998 395 VEMAEIASRKLVE 407 (582)
Q Consensus 395 ~~~a~~~~~~~~~ 407 (582)
+++|...++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.42 E-value=6.9e-07 Score=72.96 Aligned_cols=94 Identities=12% Similarity=-0.068 Sum_probs=81.9
Q ss_pred HHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 007998 350 YGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427 (582)
Q Consensus 350 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (582)
+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445667788999999999999876 3345 78889999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCC
Q 007998 428 RWDDVGRVRKAMKNRD 443 (582)
Q Consensus 428 ~~~~a~~~~~~m~~~~ 443 (582)
++++|...+++..+..
T Consensus 100 ~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 100 NANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999887654
No 144
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=0.00022 Score=68.85 Aligned_cols=181 Identities=10% Similarity=-0.029 Sum_probs=130.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 007998 76 FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL-ALFETLQIHSHVLRHGFLADALLGTTLLDVYA 154 (582)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 154 (582)
|+.+-......+..++|+++++.++..++. +...|+.--..+...+ .++++++.++.+++..+ .+..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 344444445556667899999999885432 3345666666666777 59999999999998764 46677877777777
Q ss_pred hc-C-CHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChh--------HHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 007998 155 KV-G-EIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLAS--------EAVDLFKRMKMEGVFKPNEVTVLGALAACG 221 (582)
Q Consensus 155 ~~-g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~ 221 (582)
+. + +.+++.++++++.+. |-.+|+--...+.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 76 6 888999999888654 5677777666666666666 8999999998876 568888888888887
Q ss_pred ccCC-------cHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 007998 222 HLGA-------WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261 (582)
Q Consensus 222 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 261 (582)
+.+. ++++.+.....+...+ -|...|+-+-..+.+.|+.
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred hccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence 7775 5677777777777653 3677777666666666653
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=2.3e-06 Score=75.00 Aligned_cols=127 Identities=9% Similarity=0.082 Sum_probs=93.8
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhH-HhhcCCH--H
Q 007998 288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL-LGRAGRL--Q 364 (582)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 364 (582)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34677788888888877642 3355677778888888888888888888888732 2345666777777 7788888 8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998 365 EACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416 (582)
Q Consensus 365 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 416 (582)
+|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 998888876 3334 577888888999999999999999999999999876543
No 146
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=7.3e-05 Score=71.87 Aligned_cols=192 Identities=10% Similarity=-0.001 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--HHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCC-hhHHHHHHH
Q 007998 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL--LDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGD-GPRALELFE 301 (582)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~--~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 301 (582)
+++..+++.++....+ +..+|+.-...+.+.|+ ++++..+++++. .+.|..+|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4445555555544322 44455544444444442 455555555443 24455555555555555555 355555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhc-------
Q 007998 302 QMGRAGVKPDDVSYLAALCACNHA--------------GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA------- 360 (582)
Q Consensus 302 ~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 360 (582)
++.+.. +-|...|+.....+.+. +.++++.+++....... +-|...|+-+--.+.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccc
Confidence 555542 22333443333332222 23445555555555421 12333333222222222
Q ss_pred ----CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998 361 ----GRLQEACDIVKSV-SMGTDMVLWQTLLGA-----CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422 (582)
Q Consensus 361 ----g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 422 (582)
+.++++++.++++ ...||. .|..+..+ ....+..++....+.++.+++|...+-|..+...
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3456666666655 334442 33322111 1134566677777777777777666555554433
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.39 E-value=1.4e-06 Score=74.07 Aligned_cols=107 Identities=11% Similarity=0.017 Sum_probs=78.3
Q ss_pred CCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 007998 309 KPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTL 385 (582)
Q Consensus 309 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 385 (582)
.|+. ..+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4433 345556667777777777777777777632 235566677777788888888888887765 3334 56778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416 (582)
Q Consensus 386 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 416 (582)
..++...|++++|...|++++++.|+++...
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 8899999999999999999999988776553
No 148
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.38 E-value=1.9e-06 Score=73.28 Aligned_cols=94 Identities=11% Similarity=-0.024 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253 (582)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 253 (582)
...|..+...+.+.|++++|+..|++..... |.+...|..+..++...|++++|...|++.++..+. +...+..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 3445555555556666666666666555553 344455555555555555555555555555544321 3334444444
Q ss_pred HHHhcCCHHHHHHHHhc
Q 007998 254 MYAKCGLLDKAFEVFDN 270 (582)
Q Consensus 254 ~y~~~g~~~~A~~~~~~ 270 (582)
+|.+.|++++|...|++
T Consensus 113 ~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 44444444444444443
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.37 E-value=1.2e-05 Score=65.01 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 237 (582)
.|..+...+...|++++|++.|+++.... +.+..++..+...+...|++++|..+++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444444444444444444444444332 2233333333333444444444444444333
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.37 E-value=1.6e-06 Score=74.95 Aligned_cols=95 Identities=9% Similarity=0.011 Sum_probs=55.9
Q ss_pred hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 007998 348 KHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425 (582)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (582)
..+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444455555555555555555543 2223 455566666666666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHHhC
Q 007998 426 YERWDDVGRVRKAMKNR 442 (582)
Q Consensus 426 ~g~~~~a~~~~~~m~~~ 442 (582)
.|++++|...+++..+.
T Consensus 92 ~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 66666666666665543
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=4.2e-06 Score=69.55 Aligned_cols=98 Identities=11% Similarity=0.036 Sum_probs=79.6
Q ss_pred ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 346 NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423 (582)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (582)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566667777777788888888777765 2233 5778888888889999999999999999999999889999999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 007998 424 AAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 424 ~~~g~~~~a~~~~~~m~~~~ 443 (582)
...|++++|...+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 99999999999998877543
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=8e-06 Score=65.39 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 007998 315 YLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY 392 (582)
Q Consensus 315 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 392 (582)
+..+...+...|++++|...|+...... +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3344444445555555555555554421 123344444555555555555555555543 1222 455666666777777
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998 393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422 (582)
Q Consensus 393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 422 (582)
|++++|...++++++.+|+++..+..+..+
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777666665555544
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.34 E-value=1.8e-06 Score=82.28 Aligned_cols=49 Identities=18% Similarity=0.134 Sum_probs=22.9
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHcC-CCHHHHHHHHHHHhH
Q 007998 290 HGDGPRALELFEQMGRAGVKPDDVSYLAALC-ACNHA-GLVDDGVRLFNSMAN 340 (582)
Q Consensus 290 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~-g~~~~a~~~~~~~~~ 340 (582)
.|+.++|++.+++..+ ..|+......-+. .+.+. +.++++.++|..+.+
T Consensus 148 ~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4555666666555544 2444432222222 22222 445566666665554
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.33 E-value=1.2e-05 Score=65.72 Aligned_cols=92 Identities=11% Similarity=-0.043 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 255 (582)
.|..+...+...|++++|++.|++..... +.+...+..+..++...|++++|...+....+.. +.+...+..+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34444445555555555555555554442 3344444444444455555555555555444432 11234444444444
Q ss_pred HhcCCHHHHHHHHhc
Q 007998 256 AKCGLLDKAFEVFDN 270 (582)
Q Consensus 256 ~~~g~~~~A~~~~~~ 270 (582)
.+.|++++|...|++
T Consensus 91 ~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHH
Confidence 444444444444443
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=3.6e-06 Score=75.35 Aligned_cols=170 Identities=10% Similarity=-0.020 Sum_probs=98.6
Q ss_pred HHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH
Q 007998 253 DMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD 330 (582)
Q Consensus 253 ~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 330 (582)
......|+++++.+.++.-. .......|..+...+...|++++|+..|++..+. .|+...+... ....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH
Confidence 33444555666655555332 0123445666666777777777777777776653 1211100000 0000
Q ss_pred HHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007998 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408 (582)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 408 (582)
-. . ......+..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...|++++++
T Consensus 82 ~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 82 KK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 00 0 001245666777778888888888887765 2233 6788888999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHH-HHHHHHHhC
Q 007998 409 GSNNCGDFVLLSNLYAAYERWDDVG-RVRKAMKNR 442 (582)
Q Consensus 409 ~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 442 (582)
+|.++..+..+..++...++.+++. ..++.|...
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999888877776 555555443
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=4.3e-06 Score=68.53 Aligned_cols=109 Identities=9% Similarity=-0.086 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007998 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQL 391 (582)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 391 (582)
.+......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444455555666666666666555522 223455566666666666666666666654 2233 56778888888888
Q ss_pred cCChHHHHHHHHHHHHcC------CCCchhHHHHHHHH
Q 007998 392 YGDVEMAEIASRKLVEMG------SNNCGDFVLLSNLY 423 (582)
Q Consensus 392 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 423 (582)
.|++++|...++++++++ |.++.....+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888 76666666555544
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.31 E-value=2.7e-06 Score=71.55 Aligned_cols=106 Identities=13% Similarity=0.044 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007998 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQL 391 (582)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 391 (582)
.+..+...+.+.|++++|...|+.+.... +.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34445556666777777777777666632 234556666677777777777777777665 2233 56677778888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998 392 YGDVEMAEIASRKLVEMGSNNCGDFVLLS 420 (582)
Q Consensus 392 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 420 (582)
.|++++|...+++++++.|+++.......
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 89999999999999988887766554433
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=5.4e-06 Score=66.43 Aligned_cols=97 Identities=12% Similarity=0.136 Sum_probs=86.6
Q ss_pred hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455667888899999999999999986 3334 78889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 007998 425 AYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 425 ~~g~~~~a~~~~~~m~~~~ 443 (582)
..|++++|...+++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999887654
No 159
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.30 E-value=1.3e-05 Score=65.92 Aligned_cols=95 Identities=9% Similarity=-0.085 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253 (582)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 253 (582)
...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...++++.+... .+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 3455555555666666666666666555443 33455555555555555555555555555555432 23444555555
Q ss_pred HHHhcCCHHHHHHHHhcc
Q 007998 254 MYAKCGLLDKAFEVFDNI 271 (582)
Q Consensus 254 ~y~~~g~~~~A~~~~~~~ 271 (582)
+|.+.|++++|.+.|++.
T Consensus 93 ~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 555555555555555543
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=5.6e-06 Score=71.47 Aligned_cols=107 Identities=14% Similarity=0.033 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007998 313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQ 390 (582)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 390 (582)
..+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345555556666666666666666666532 224556666777777777777777777665 3334 5788889999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420 (582)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 420 (582)
..|++++|...|+++++++|+++..+....
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999998887655444
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.28 E-value=2.1e-06 Score=70.77 Aligned_cols=93 Identities=6% Similarity=-0.025 Sum_probs=65.1
Q ss_pred hHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-------hhHHHH
Q 007998 349 HYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC-------GDFVLL 419 (582)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l 419 (582)
.+..+...|.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|++. .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445566666777777777777654 3334 567777777788888888888888888887776543 256667
Q ss_pred HHHHHhcCCchHHHHHHHHHHh
Q 007998 420 SNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 420 ~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7777788888888888776654
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=7.6e-06 Score=68.81 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=43.1
Q ss_pred HHhhhhHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 350 YGSVVDLLGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 350 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHH
Confidence 333444444444444444444433 22333 3444444444555555555555555555555544445555555555
Q ss_pred hcCCchHHHHHHHHHH
Q 007998 425 AYERWDDVGRVRKAMK 440 (582)
Q Consensus 425 ~~g~~~~a~~~~~~m~ 440 (582)
..|++++|...+++..
T Consensus 111 ~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555554444
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.26 E-value=0.00016 Score=69.49 Aligned_cols=181 Identities=13% Similarity=0.078 Sum_probs=132.7
Q ss_pred HHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-HHHHHHHH
Q 007998 261 LDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGD--GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL-VDDGVRLF 335 (582)
Q Consensus 261 ~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 335 (582)
++++..+++.+. .+.+..+|+.-...+...|+ +++++.+++++.+.. +-|...|+.-.....+.|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777654 36788999998888888884 899999999999864 3356677777777777887 69999999
Q ss_pred HHHhHcCCccChhhHHhhhhHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 007998 336 NSMANCGVKPNMKHYGSVVDLLGRA--------------GRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY------- 392 (582)
Q Consensus 336 ~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------- 392 (582)
+.+++.. +-|...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 9999844 34566666555555444 4588899888876 3345 788888666555544
Q ss_pred ----CChHHHHHHHHHHHHcCCCCchhHHHHHHH---HHhcCCchHHHHHHHHHHhCC
Q 007998 393 ----GDVEMAEIASRKLVEMGSNNCGDFVLLSNL---YAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 393 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~ 443 (582)
+.++++++.++++++.+|++.-.+..++.. ....|..+++...++++++.+
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 457899999999999999885555444332 224577788888888887644
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.9e-05 Score=66.30 Aligned_cols=109 Identities=9% Similarity=-0.035 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007998 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLG 387 (582)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 387 (582)
.+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|.+.+++. ...| +...|..+..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 3344444444444444444444444431 122 344445555566666666666666544 2223 5677778888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
++...|++++|...++++++.+|+++..+..+..+..
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888899999999999999999988777766665543
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.19 E-value=9.6e-06 Score=67.32 Aligned_cols=99 Identities=4% Similarity=-0.128 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007998 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGAC 389 (582)
Q Consensus 312 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 389 (582)
...+..+...+...|++++|...|+...... +.+...+..+..+|...|++++|...+++. ...| +...|..+..++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3445555555555556666665555555522 223455555666666666666666666554 2223 566777788888
Q ss_pred HhcCChHHHHHHHHHHHHcCCC
Q 007998 390 QLYGDVEMAEIASRKLVEMGSN 411 (582)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~p~ 411 (582)
...|++++|...++++++..|+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888887765
No 166
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.18 E-value=2.1e-05 Score=76.90 Aligned_cols=31 Identities=6% Similarity=-0.186 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 007998 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEG 204 (582)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 204 (582)
...|..+...|.+.|++++|+..|++.....
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~ 177 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL 177 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3456666666777777777777777766553
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.16 E-value=3.3e-06 Score=75.60 Aligned_cols=118 Identities=12% Similarity=-0.050 Sum_probs=58.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCH----------------
Q 007998 150 LDVYAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE---------------- 210 (582)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~---------------- 210 (582)
+......|+++.+.+.++..... ....|..+...+.+.|++++|+..|++..... +.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHH
Confidence 33444556666666666543221 34567777788888888888888888887653 1121
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 007998 211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN 270 (582)
Q Consensus 211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 270 (582)
..+..+..++...|++++|...++..++.. +.+...+..+..+|...|++++|.+.|++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 344444444445555555555555444442 12334444444444444444444444443
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.16 E-value=1.1e-05 Score=82.44 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=75.4
Q ss_pred hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++++|++..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456777888888889999998888876 3334 68889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHH-HHHHHH
Q 007998 425 AYERWDDVGR-VRKAMK 440 (582)
Q Consensus 425 ~~g~~~~a~~-~~~~m~ 440 (582)
..|+++++.+ .++.|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999988764 455554
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.14 E-value=1.4e-05 Score=68.79 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
+...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 356788888888999999999999999999999999999999999999999999999998877643
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=5.3e-06 Score=85.33 Aligned_cols=116 Identities=8% Similarity=0.012 Sum_probs=80.8
Q ss_pred HHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007998 321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMA 398 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 398 (582)
.+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445666666766666666632 223566666777777777777777777655 3334 577788888888888888999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHH--HHhcCCchHHHHHHH
Q 007998 399 EIASRKLVEMGSNNCGDFVLLSNL--YAAYERWDDVGRVRK 437 (582)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 437 (582)
++.++++++.+|+++..+..++.+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998888888888888888777 778888888888876
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.12 E-value=9.9e-06 Score=68.36 Aligned_cols=64 Identities=9% Similarity=-0.078 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCchhH----HHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEM-------GSNNCGDF----VLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 379 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
...|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|...|++..+.
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 348999999999999999999999999999 99999999 99999999999999999999988653
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.11 E-value=2.8e-06 Score=68.73 Aligned_cols=83 Identities=13% Similarity=0.044 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHH
Q 007998 360 AGRLQEACDIVKSV-SM---GT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434 (582)
Q Consensus 360 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 434 (582)
.|++++|++.|++. .. .| +...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666654 33 23 355666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 007998 435 VRKAMKNR 442 (582)
Q Consensus 435 ~~~~m~~~ 442 (582)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766543
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.10 E-value=2.5e-05 Score=80.30 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=69.0
Q ss_pred HHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCC
Q 007998 251 VIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGL 327 (582)
Q Consensus 251 li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 327 (582)
+...|.+.|++++|.+.|++.. .+.+..+|..+..+|.+.|++++|++.+++..+. .| +...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 3344566777777777776543 2345667777777777777777777777777664 33 34566666667777777
Q ss_pred HHHHHHHHHHHhHcCCccChhhHHhhhhH--HhhcCCHHHHHHHHH
Q 007998 328 VDDGVRLFNSMANCGVKPNMKHYGSVVDL--LGRAGRLQEACDIVK 371 (582)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 371 (582)
+++|.+.|+++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777776622 1122233333333 566666666666666
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=8.7e-06 Score=66.75 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=60.1
Q ss_pred hhhHHhhcCCHHHHHHHHHhC-CCCC-CH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHH
Q 007998 353 VVDLLGRAGRLQEACDIVKSV-SMGT-DM---VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLLSNLYA 424 (582)
Q Consensus 353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 424 (582)
+...+.+.|++++|.+.|++. ...| +. ..+..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444556666666666666654 1122 12 456666677777777777777777777777776 566777777777
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007998 425 AYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 425 ~~g~~~~a~~~~~~m~~~ 442 (582)
..|++++|...++...+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777776654
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.08 E-value=4.6e-05 Score=62.10 Aligned_cols=45 Identities=4% Similarity=-0.221 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 379 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
..+|..+...+...|++++|...++++++..| ++.....+..+..
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 55666777777888888888888888888777 5555555555443
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=2.2e-05 Score=77.68 Aligned_cols=136 Identities=11% Similarity=0.004 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhH
Q 007998 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDL 356 (582)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 356 (582)
..|..+...+.+.|++++|+..|++..+. .|+.. ..... +...+ ..| +...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHH--HHHHHHHHHHHHHHH
Confidence 34666666777777777777777766541 01000 00000 11111 122 35677788888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHH
Q 007998 357 LGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR 434 (582)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 434 (582)
|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 5555 688899999999999999999999999999999999999999999988888777754
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.07 E-value=1.7e-05 Score=62.70 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=52.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhc
Q 007998 317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT---DMVLWQTLLGACQLY 392 (582)
Q Consensus 317 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~ 392 (582)
.+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 33444444455555555555444421 123344444555555555555555555543 2222 456667777777777
Q ss_pred -CChHHHHHHHHHHHHcCCCC
Q 007998 393 -GDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 393 -g~~~~a~~~~~~~~~~~p~~ 412 (582)
|++++|.+.++++++..|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 90 EGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp SSCSHHHHHHHHHHGGGCCCC
T ss_pred hCCHHHHHHHHHHHhhcccCC
Confidence 77777777777777777654
No 178
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.05 E-value=3.5e-05 Score=63.21 Aligned_cols=61 Identities=11% Similarity=-0.117 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 238 (582)
+|..+...+.+.|++++|++.|++.++.. |.+...|..+..++...|++++|...+.+.++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455555555566666666665555543 34445555555555555555555555555443
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=8.7e-05 Score=75.11 Aligned_cols=161 Identities=11% Similarity=-0.047 Sum_probs=87.5
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCC-Cch----hHHHHHHHHHHhcCCHHHHHHHHhccc-------CCC-CHHH
Q 007998 213 VLGALAACGHLGAWKEGDKIHEYIREERLD-MNV----VVCNAVIDMYAKCGLLDKAFEVFDNIK-------CRK-SLVT 279 (582)
Q Consensus 213 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~-~~~~ 279 (582)
+..+...|...|++++|.+.+..+.+.-.. ++. .+.+.+...+...|+.+.|.+++.... ..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 444555555555555555555544331100 111 122223333344555666665555432 111 1345
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhc--CC--CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhH--cCCc-c-C--hh
Q 007998 280 WNTMVMAFAVHGDGPRALELFEQMGRA--GV--KPD-DVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVK-P-N--MK 348 (582)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~--~~~~-~-~--~~ 348 (582)
+..+...|...|++++|..++++.... +. .|. ...+..++..|...|++++|..++++... ..+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777766542 11 122 23566777777888888888888777665 1111 1 1 24
Q ss_pred hHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998 349 HYGSVVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~~~~~~ 373 (582)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5566667777788888887665443
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=6.1e-05 Score=76.28 Aligned_cols=161 Identities=4% Similarity=-0.146 Sum_probs=90.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhc-CCCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHHhH----cCCccC-hhh
Q 007998 280 WNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDDV----SYLAALCACNHAGLVDDGVRLFNSMAN----CGVKPN-MKH 349 (582)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~ 349 (582)
+..++..|...|++++|.+.+.++... +..++.. ..+.+-..+...|+++.+..+++.... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445556666666666666666555431 1111111 122222233345666666666666554 111111 345
Q ss_pred HHhhhhHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCC----ch
Q 007998 350 YGSVVDLLGRAGRLQEACDIVKSV-------SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG---SNN----CG 414 (582)
Q Consensus 350 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 414 (582)
+..|...|...|++++|.+++++. ..+| ...++..++..|...|++++|...+++++... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556677777777777777776644 1122 24466677777777888888888877776643 211 23
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 415 DFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 415 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
.+..++..+...|++++|...+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566666777778888777666553
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.04 E-value=1.7e-05 Score=64.86 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=79.0
Q ss_pred hhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-------chhHHH
Q 007998 348 KHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN-------CGDFVL 418 (582)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 418 (582)
..+..+...+...|++++|...+++. ... .+...|..+...+...|++++|...++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44556677777888888888888765 222 367788888899999999999999999999988765 778999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 007998 419 LSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 419 l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
++.+|...|++++|...+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=1.6e-05 Score=64.74 Aligned_cols=96 Identities=7% Similarity=-0.026 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 007998 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYG 393 (582)
Q Consensus 316 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 393 (582)
..+...+.+.|++++|...|+++.+.. +.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334455666677777777777666632 224556666666777777777777777665 3334 5667777777888888
Q ss_pred ChHHHHHHHHHHHHcCCCC
Q 007998 394 DVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 394 ~~~~a~~~~~~~~~~~p~~ 412 (582)
++++|...++++++.+|.+
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 8888888888888877754
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=5e-06 Score=67.19 Aligned_cols=92 Identities=14% Similarity=0.043 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHhHcC--CccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 007998 325 AGLVDDGVRLFNSMANCG--VKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEI 400 (582)
Q Consensus 325 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 400 (582)
.|++++|...|++..+.+ -+.+...+..+..+|.+.|++++|.+.|++. ...| +...+..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355566666666666522 1123455666666777777777777777665 2233 56777788888888888888888
Q ss_pred HHHHHHHcCCCCchhH
Q 007998 401 ASRKLVEMGSNNCGDF 416 (582)
Q Consensus 401 ~~~~~~~~~p~~~~~~ 416 (582)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888888776543
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.02 E-value=3.1e-05 Score=65.79 Aligned_cols=135 Identities=14% Similarity=0.053 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhh
Q 007998 279 TWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPDD----VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV 353 (582)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (582)
++..+...|...|++++|+..+++..+... .++. .++..+...+...|++++|...+++..+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------ 78 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL------------ 78 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 455566666666666666666666554210 0111 23444444445555555555555444430
Q ss_pred hhHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCchhHHHHHHHHHhc
Q 007998 354 VDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS------NNCGDFVLLSNLYAAY 426 (582)
Q Consensus 354 i~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~ 426 (582)
....+..+ ....+..+...+...|++++|...+++.++..+ .....+..++.+|...
T Consensus 79 ----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 79 ----------------ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp ----------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 00001000 134555666677777777777777777766421 1234667788888888
Q ss_pred CCchHHHHHHHHHHh
Q 007998 427 ERWDDVGRVRKAMKN 441 (582)
Q Consensus 427 g~~~~a~~~~~~m~~ 441 (582)
|++++|.+.+++..+
T Consensus 143 g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 888888888876653
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.01 E-value=9e-05 Score=60.51 Aligned_cols=101 Identities=13% Similarity=-0.073 Sum_probs=64.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHhHcCCccCh---hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-C---HHHHHHHHHHHH
Q 007998 319 LCACNHAGLVDDGVRLFNSMANCGVKPNM---KHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-D---MVLWQTLLGACQ 390 (582)
Q Consensus 319 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~---~~~~~~ll~~~~ 390 (582)
...+...|++++|...|+.+.+... .+. ..+..+..+|.+.|++++|.+.+++. ...| + ...+..+..++.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3445556666666666666665221 111 34555666667777777777776654 2223 2 556777778888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420 (582)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 420 (582)
..|++++|...++++++..|+++.......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 889999999999999998887765544333
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.00 E-value=2e-05 Score=67.70 Aligned_cols=76 Identities=13% Similarity=-0.009 Sum_probs=60.8
Q ss_pred hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hhHHHHHHH
Q 007998 347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC-GDFVLLSNL 422 (582)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 422 (582)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456777888888899999998888776 3344 688899999999999999999999999999999887 444444433
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00048 Score=72.13 Aligned_cols=169 Identities=10% Similarity=0.010 Sum_probs=123.9
Q ss_pred HHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCC----------hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC--
Q 007998 261 LDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGD----------GPRALELFEQMGRAGVKPDDVSYLAALCACNHAG-- 326 (582)
Q Consensus 261 ~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 326 (582)
.++|.+.++.+. .+.+..+|+.--..+...|+ ++++++.++++.+.. +-+...|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 456677776554 24455667766666666665 788888888887752 224456766666777777
Q ss_pred CHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 007998 327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG-RLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY----------- 392 (582)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----------- 392 (582)
+++++...++++.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 6688888888888743 345566666666666777 788888888877 4455 788888877776653
Q ss_pred ---CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchH
Q 007998 393 ---GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDD 431 (582)
Q Consensus 393 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 431 (582)
+.++++.+.+++++..+|++..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888655
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=5.1e-05 Score=77.65 Aligned_cols=125 Identities=10% Similarity=0.017 Sum_probs=96.5
Q ss_pred HHHcCCCHHHHHHHHHHHhH-cC--Ccc----ChhhHHhhhhHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 007998 321 ACNHAGLVDDGVRLFNSMAN-CG--VKP----NMKHYGSVVDLLGRAGRLQEACDIVKSV---------SMGTD-MVLWQ 383 (582)
Q Consensus 321 a~~~~g~~~~a~~~~~~~~~-~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 383 (582)
.+...|++++|+.++++..+ .. +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578888888888887776 21 112 2456788888888999999998887654 33454 46788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH-----cCCCCch---hHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 384 TLLGACQLYGDVEMAEIASRKLVE-----MGSNNCG---DFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 384 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
.|...|...|++++|+.+++++++ ++|+.|. ....|..++...+++++|..++.++++.-.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999887 4676654 4457888889999999999999999875433
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.95 E-value=2.4e-05 Score=76.55 Aligned_cols=148 Identities=13% Similarity=-0.038 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHH
Q 007998 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357 (582)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 357 (582)
..|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34566666777778888888888777653 344332 122233333322211 12556667777
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH-hcCCchHHHH
Q 007998 358 GRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA-AYERWDDVGR 434 (582)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a~~ 434 (582)
.+.|++++|++.+++. ...| +...|..+..++...|++++|...|+++++++|+++..+..|..+.. ..+..+.+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777765 3334 56777777788888888888888888888888877777777777643 4456677777
Q ss_pred HHHHHHhCCC
Q 007998 435 VRKAMKNRDV 444 (582)
Q Consensus 435 ~~~~m~~~~~ 444 (582)
.+++|.....
T Consensus 321 ~~~~~l~~~p 330 (338)
T 2if4_A 321 MYKGIFKGKD 330 (338)
T ss_dssp ----------
T ss_pred HHHHhhCCCC
Confidence 7777765443
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.94 E-value=4.9e-05 Score=64.56 Aligned_cols=136 Identities=10% Similarity=-0.016 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCC----
Q 007998 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPD---- 311 (582)
Q Consensus 245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 311 (582)
..++..+...|...|++++|...|++.. ..++ ..++..+...|...|++++|+..+++..+... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4577888999999999999999998754 0122 14788899999999999999999999765210 111
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 007998 312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQ 390 (582)
Q Consensus 312 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 390 (582)
...+..+...+...|++++|...+++..+. .++.+..+ ....+..+...+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI----------------------------AQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------------------------HHHccchHhHHHHHHHHHHHHH
Confidence 235566666777778888887777766541 00011000 1234455556666
Q ss_pred hcCChHHHHHHHHHHHHc
Q 007998 391 LYGDVEMAEIASRKLVEM 408 (582)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~ 408 (582)
..|++++|.+.+++.++.
T Consensus 141 ~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 666777777666666554
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=1.1e-05 Score=79.00 Aligned_cols=115 Identities=7% Similarity=-0.066 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007998 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393 (582)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 393 (582)
.+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..++.+.|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHHcC
Confidence 4556677788899999999999998873 233221 223344555544432 137888899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 394 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+...
T Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999998876543
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=2.6e-05 Score=61.76 Aligned_cols=92 Identities=12% Similarity=-0.060 Sum_probs=74.0
Q ss_pred ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhHH
Q 007998 346 NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN------CGDFV 417 (582)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 417 (582)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3455666777888888888888888765 3334 67888899999999999999999999999999988 77788
Q ss_pred HHHHHHHhcCCchHHHHHHH
Q 007998 418 LLSNLYAAYERWDDVGRVRK 437 (582)
Q Consensus 418 ~l~~~~~~~g~~~~a~~~~~ 437 (582)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777765543
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.82 E-value=3.6e-05 Score=64.93 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=48.2
Q ss_pred hHHhhhhHHhhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 349 HYGSVVDLLGRAGRLQEACDIVKSV--------SMGTD-MVLW----QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4444444455555555554444432 33674 5678 889999999999999999999999999987654
Q ss_pred H
Q 007998 416 F 416 (582)
Q Consensus 416 ~ 416 (582)
+
T Consensus 139 ~ 139 (159)
T 2hr2_A 139 T 139 (159)
T ss_dssp C
T ss_pred H
Confidence 4
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.80 E-value=6.2e-05 Score=60.29 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=65.9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 365 EACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 365 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
+|.+.|++. ...| +...|..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555544 3344 67888899999999999999999999999999999999999999999999999999999987653
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.79 E-value=0.0001 Score=57.40 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
+...|..+...+...|++++|+..|+++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999987653
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.76 E-value=0.00012 Score=55.47 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=62.9
Q ss_pred hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566667777778888887777765 2233 67778888888899999999999999999999988888888888876
Q ss_pred hcC
Q 007998 425 AYE 427 (582)
Q Consensus 425 ~~g 427 (582)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.69 E-value=0.00027 Score=72.13 Aligned_cols=135 Identities=14% Similarity=-0.026 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998 174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID 253 (582)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 253 (582)
...|..+...|.+.|++++|+..|++.++.. +.+.. + ..+...+ .. ......|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-~-----------~~~~~~~----~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYG-L-----------SEKESKA----SE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCS-C-----------CHHHHHH----HH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--ccccc-C-----------ChHHHHH----HH----HHHHHHHHHHHH
Confidence 4467778888888888888888888887653 11200 0 0000000 00 001334455555
Q ss_pred HHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHH
Q 007998 254 MYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDD 330 (582)
Q Consensus 254 ~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 330 (582)
+|.+.|++++|+..|++.. .+.+...|..+..+|...|++++|+..|++..+. .|+. ..+..+..++.+.++.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555432 1334555555555566666666666666655542 3333 244444445555555554
Q ss_pred HH
Q 007998 331 GV 332 (582)
Q Consensus 331 a~ 332 (582)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.68 E-value=2.3e-05 Score=66.00 Aligned_cols=88 Identities=8% Similarity=0.048 Sum_probs=70.2
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998 357 LGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGD----------VEMAEIASRKLVEMGSNNCGDFVLLSNLYA 424 (582)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (582)
..|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34556777777777765 3344 67777777777766655 469999999999999999999999999999
Q ss_pred hcC-----------CchHHHHHHHHHHhCCC
Q 007998 425 AYE-----------RWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 425 ~~g-----------~~~~a~~~~~~m~~~~~ 444 (582)
..| ++++|.+.|++..+.+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 875 89999999999887654
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.58 E-value=0.00044 Score=68.31 Aligned_cols=117 Identities=9% Similarity=-0.070 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-------------------CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 007998 146 GTTLLDVYAKVGEIVSAKKVFDEMGV-------------------RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206 (582)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 206 (582)
+..+...|.+.|++++|.+.|++... .+...|+.+...|.+.|++++|++.+++.++..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--
Confidence 44455556666666666665554422 123455555566666666666666666655543
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007998 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF 265 (582)
Q Consensus 207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 265 (582)
+.+...+..+..++...|++++|...++++++... .+...+..+...+.+.++.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555666666666666655555432 13444445555555554444443
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.58 E-value=0.00049 Score=52.58 Aligned_cols=69 Identities=6% Similarity=-0.008 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 377 TDMVLWQTLLGACQLYGD---VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 377 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
+|+..|..+..++...++ .++|..+++++++.+|+++.+...++..+...|++++|...|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 478888888888865555 799999999999999999999999999999999999999999999987654
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.0004 Score=54.67 Aligned_cols=68 Identities=6% Similarity=-0.105 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 377 TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 377 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
++...|..+...+...|++++|...++++++.+|.++..+..++.+|...|++++|...+++..+...
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 35677888999999999999999999999999999999999999999999999999999999887543
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.48 E-value=0.0022 Score=53.19 Aligned_cols=110 Identities=12% Similarity=-0.026 Sum_probs=60.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHH
Q 007998 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK----CGLLDKA 264 (582)
Q Consensus 189 ~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A 264 (582)
++++|++.|++..+.| .|+.. +...|...+..++|.+.+++..+.| +...+..|..+|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4566666666666655 34433 4444555555566666666665553 44555555555555 5556666
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhcC
Q 007998 265 FEVFDNIKCRKSLVTWNTMVMAFAV----HGDGPRALELFEQMGRAG 307 (582)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 307 (582)
.+.|++.....+..++..|...|.. .++.++|+..|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6665544323445555555555555 555555555555555543
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.48 E-value=0.00065 Score=69.42 Aligned_cols=123 Identities=8% Similarity=-0.110 Sum_probs=83.4
Q ss_pred HHHhCCChhHHHHHHHHHHhc---CCCCC---H-HHHHHHHHHHHcCCCHHHHHHHHHHHhH-----cCC-ccC-hhhHH
Q 007998 286 AFAVHGDGPRALELFEQMGRA---GVKPD---D-VSYLAALCACNHAGLVDDGVRLFNSMAN-----CGV-KPN-MKHYG 351 (582)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m~~~---g~~p~---~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~~-~~~-~~~~~ 351 (582)
.+...|++++|+.++++.++. -+.|+ . .+++.|..+|...|++++|..++++.++ .|. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888776542 12232 2 4677788888888888888888877765 121 122 35677
Q ss_pred hhhhHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007998 352 SVVDLLGRAGRLQEACDIVKSV---------SMGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEM 408 (582)
Q Consensus 352 ~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 408 (582)
.|..+|...|++++|+.++++. +..|+.. +.+.+-.++...+.++.|+.+++++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888877654 3344433 3344556667888899999999888763
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.39 E-value=0.002 Score=53.47 Aligned_cols=89 Identities=8% Similarity=-0.116 Sum_probs=46.3
Q ss_pred hhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh---
Q 007998 353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA--- 425 (582)
Q Consensus 353 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 425 (582)
|..+|...+.+++|.+.|++.-...+...+..|...|.. .+++++|.+.|++..+.+ ++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCC
Confidence 333444444444455444443112244444455555544 455666666666665542 44555666666665
Q ss_pred -cCCchHHHHHHHHHHhCC
Q 007998 426 -YERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 426 -~g~~~~a~~~~~~m~~~~ 443 (582)
.+++++|...+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 566666666666555544
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.37 E-value=0.0007 Score=68.08 Aligned_cols=116 Identities=11% Similarity=0.131 Sum_probs=84.7
Q ss_pred hhHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCC---chh
Q 007998 354 VDLLGRAGRLQEACDIVKSV---------SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVE-----MGSNN---CGD 415 (582)
Q Consensus 354 i~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~ 415 (582)
+.-+.+.|++++|++++++. +..| -..+++.|..+|...|++++|+.+++++++ ++|+. ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677888888777644 1122 245788889999999999999999999886 34554 457
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 007998 416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK 487 (582)
Q Consensus 416 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 487 (582)
+..|+.+|..+|++++|..++++..+--.. .=...||...++...|.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999887642110 011368999999888888777665
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.24 E-value=0.00028 Score=59.30 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=37.3
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCc
Q 007998 363 LQEACDIVKSV-SMGT-DMVLWQTLLGACQLY-----------GDVEMAEIASRKLVEMGSNNC 413 (582)
Q Consensus 363 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 413 (582)
+++|+..|++. .+.| +...|..+..+|... |++++|++.|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 34666666654 4444 456677777777665 589999999999999999874
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.24 E-value=0.018 Score=60.16 Aligned_cols=170 Identities=8% Similarity=-0.083 Sum_probs=110.3
Q ss_pred CCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 007998 87 SKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA----------LFETLQIHSHVLRHGFLADALLGTTLLDVYAKV 156 (582)
Q Consensus 87 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 156 (582)
...++|++.++++....+. +...|+.--.++...++ ++++.+.++.+++..+ -+..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 3345778888888875332 33345555555555555 7888888888887753 3666777777777777
Q ss_pred C--CHHHHHHHHhhcC---CCChhHHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc-------
Q 007998 157 G--EIVSAKKVFDEMG---VRDIASWNALIAGLAQGN-LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL------- 223 (582)
Q Consensus 157 g--~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~------- 223 (582)
| +++++.+.++++. .+|-.+|+.-...+.+.| .++++++.++++.+.. +-|...|.....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccccc
Confidence 7 6688888887764 446677877777777777 7788888888887765 55667776666665543
Q ss_pred -------CCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 007998 224 -------GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL 261 (582)
Q Consensus 224 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 261 (582)
+.++++.+.+..++...+ -|...|+-+-..+.+.++.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCc
Confidence 334556666666655542 2455555555555555543
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.21 E-value=0.00091 Score=53.24 Aligned_cols=79 Identities=16% Similarity=0.079 Sum_probs=47.7
Q ss_pred HHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007998 331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEM 408 (582)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 408 (582)
+...|++..+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444444421 223445555666666666666666666554 2223 4666777777777777888888888777777
Q ss_pred CC
Q 007998 409 GS 410 (582)
Q Consensus 409 ~p 410 (582)
.|
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 65
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.20 E-value=0.0034 Score=47.01 Aligned_cols=79 Identities=13% Similarity=0.036 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM 254 (582)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 254 (582)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 344455555555555555555555555443 33444555555555555555555555555554431 133444444444
Q ss_pred HH
Q 007998 255 YA 256 (582)
Q Consensus 255 y~ 256 (582)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.99 E-value=0.0038 Score=62.62 Aligned_cols=90 Identities=8% Similarity=0.022 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHhH-cC--CccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 007998 325 AGLVDDGVRLFNSMAN-CG--VKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV---------SMGTD-MVLWQTLLG 387 (582)
Q Consensus 325 ~g~~~~a~~~~~~~~~-~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~ 387 (582)
.|++++|..++++..+ .. +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566666666666554 11 1121 245556666666666666666665543 23343 345666777
Q ss_pred HHHhcCChHHHHHHHHHHHH-----cCCCCch
Q 007998 388 ACQLYGDVEMAEIASRKLVE-----MGSNNCG 414 (582)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~ 414 (582)
.|..+|++++|+.+++++++ ++|+.|.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 77777777777777777665 3555543
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.0077 Score=60.45 Aligned_cols=99 Identities=11% Similarity=-0.087 Sum_probs=72.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHhH-cC--CccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 007998 319 LCACNHAGLVDDGVRLFNSMAN-CG--VKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV---------SMGTD-MVL 381 (582)
Q Consensus 319 l~a~~~~g~~~~a~~~~~~~~~-~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 381 (582)
+..+.+.|++++|..++++..+ .. +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4455667888888888888776 21 2222 356777888888888888888887654 33453 457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCchhHH
Q 007998 382 WQTLLGACQLYGDVEMAEIASRKLVE-----MGSNNCGDFV 417 (582)
Q Consensus 382 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 417 (582)
++.|...|...|++++|+.+++++++ ++|+.|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88899999999999999999999887 4787765443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.0012 Score=66.28 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=67.3
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCC---chhHHHHH
Q 007998 359 RAGRLQEACDIVKSV---------SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVE-----MGSNN---CGDFVLLS 420 (582)
Q Consensus 359 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~ 420 (582)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+. ..+|..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346788888887654 23343 46789999999999999999999999887 35554 45788999
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 007998 421 NLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 421 ~~~~~~g~~~~a~~~~~~m~~ 441 (582)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.89 E-value=0.0037 Score=48.26 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998 276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340 (582)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 340 (582)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555555555555432 11223455555555555555555555555554
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.83 E-value=0.0059 Score=46.73 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=51.9
Q ss_pred hhhHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998 353 VVDLLGRAGRLQEACDIVKSV-SMGT-DMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416 (582)
Q Consensus 353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 416 (582)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...|+++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 445677888888888888876 3344 566 888888899999999999999999999999887766
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.83 E-value=0.003 Score=52.44 Aligned_cols=104 Identities=10% Similarity=-0.020 Sum_probs=71.5
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcC-C-CCchhHHHHHHHHHhcCCchHHHHH
Q 007998 363 LQEACDIVKSV--SMGTDMVLWQTLLGACQLYG---DVEMAEIASRKLVEMG-S-NNCGDFVLLSNLYAAYERWDDVGRV 435 (582)
Q Consensus 363 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~ 435 (582)
+..+.+.|.+. .-.++..+.-.+..++.+.+ +.+++..+++++.+.+ | .+...+..|+-+|.+.|++++|++.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444433 12357777777777787777 5668888888888887 6 4566777888888888888888888
Q ss_pred HHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 007998 436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYA 492 (582)
Q Consensus 436 ~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 492 (582)
++.+.+.. |+...+......+...+++.|.+
T Consensus 94 ~~~lL~ie--------------------------P~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 94 VRGLLQTE--------------------------PQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp HHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcC--------------------------CCCHHHHHHHHHHHHHHHHhhHH
Confidence 88877643 33445656555666777777764
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.79 E-value=0.0031 Score=48.37 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=54.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCch-hHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998 385 LLGACQLYGDVEMAEIASRKLVEMGSNNCG-DFVLLSNLYAAYERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 385 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 444 (582)
....+...|++++|...++++++.+|.++. .+..++.+|...|++++|...+++..+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 455678899999999999999999999999 999999999999999999999999887553
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.75 E-value=0.034 Score=53.60 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
++.+|..+...+...|+++.|...++++++++| +...|..++.++.-.|++++|...+++....+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 455555555555555666666666666666654 34455566666666666666666665555443
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.66 E-value=0.056 Score=59.22 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=78.2
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCCh
Q 007998 214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293 (582)
Q Consensus 214 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (582)
..++..+.+.|..+.|.++.+. . ..-......+|++++|.++.+.+. +...|..+...+.+.|++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~~---~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDES---AEMKWRALGDASLQRFNF 697 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhhC---cHhHHHHHHHHHHHcCCH
Confidence 5555555666666666554321 1 111334566788888888877665 567888888888888888
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 373 (582)
+.|.+.|.++.. |..+...+...|+.+...++-+.....| .++.-..+|.+.|++++|.+++.++
T Consensus 698 ~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 698 KLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 888888887643 2234444444666665555544444332 1223334455667777776666655
Q ss_pred C
Q 007998 374 S 374 (582)
Q Consensus 374 ~ 374 (582)
+
T Consensus 763 ~ 763 (814)
T 3mkq_A 763 Q 763 (814)
T ss_dssp T
T ss_pred C
Confidence 4
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.56 E-value=0.14 Score=55.94 Aligned_cols=155 Identities=13% Similarity=0.086 Sum_probs=99.9
Q ss_pred HHHcCCCchHHHH-HHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 007998 82 GLAHSSKPTNAVL-WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV 160 (582)
Q Consensus 82 ~~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 160 (582)
.....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+. +. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHH
Confidence 3345778888876 44221 1123346777777888888888765421 11 1134567789999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC
Q 007998 161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240 (582)
Q Consensus 161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 240 (582)
.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-+.....|
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999987764 567899999999999999999999998742 2334444444666666555555544443
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccc
Q 007998 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272 (582)
Q Consensus 241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 272 (582)
. ++.-..+|.+.|++++|.+++.++.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 2334445666777777777666554
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.55 E-value=0.22 Score=39.84 Aligned_cols=140 Identities=9% Similarity=0.077 Sum_probs=99.8
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHH
Q 007998 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQE 365 (582)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~ 365 (582)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+-..++++..-+ +++ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34467777888888777653 2445566666555555555555555555544 332 24566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 366 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
....+-.++. +.......+.....+|+-+.-.+++..++..++.+|.....++++|.+.|+..+|..++++.=++|++
T Consensus 80 Vi~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 6666666542 45556677788899999999999999987777778999999999999999999999999999998875
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.45 E-value=0.08 Score=51.04 Aligned_cols=150 Identities=7% Similarity=-0.008 Sum_probs=82.6
Q ss_pred CCChhHHHHHHHHHH--hCCC---hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCch
Q 007998 171 VRDIASWNALIAGLA--QGNL---ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV 245 (582)
Q Consensus 171 ~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 245 (582)
..+..+|...+++.. ..+. ..+|+.+|++.++.. |-....+..+.-++.. ....+.. +.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~-------------~~~~~~~-~~ 254 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIV-------------RHSQHPL-DE 254 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-------------HHHHSCC-CH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-------------HhccCCC-ch
Confidence 446777777776543 2232 467888888888774 3344555554444430 0011100 00
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 007998 246 VVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH 324 (582)
Q Consensus 246 ~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 324 (582)
..... +..+.+....+. .+.+..+|.++...+...|++++|+..++++...+ |+...|..+...+.-
T Consensus 255 ~~~~~----------l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 255 KQLAA----------LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEM 322 (372)
T ss_dssp HHHHH----------HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred hhHHH----------HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Confidence 00000 112222111111 24566677766666666677777777777777753 666666666667777
Q ss_pred CCCHHHHHHHHHHHhHcCCccChhhH
Q 007998 325 AGLVDDGVRLFNSMANCGVKPNMKHY 350 (582)
Q Consensus 325 ~g~~~~a~~~~~~~~~~~~~~~~~~~ 350 (582)
.|++++|...|++.... .|...+|
T Consensus 323 ~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CCCHHHHHHHHHHHHhc--CCCcChH
Confidence 77777777777777763 3444443
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.31 Score=41.43 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=85.3
Q ss_pred HHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 007998 253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332 (582)
Q Consensus 253 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 332 (582)
+...++|+++.|.++-+.+. +...|..|.......|+++-|.+.|.+... |..+.-.|...|+.+.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN---DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHhC---CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 44567888888888877765 677888888888888888888888887643 233444455567776665
Q ss_pred HHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998 333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL 405 (582)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 405 (582)
++-+.....| -++.-...+.-.|+++++.+++.+.+.-|... -....+|-.+.|.++.+++
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 5555444433 23344455667888899988888876433222 1223466677777776654
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.99 E-value=0.024 Score=52.40 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=68.8
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHhc-CCchH
Q 007998 363 LQEACDIVKSV-SMGTD---MVLWQTLLGACQL-----YGDVEMAEIASRKLVEMGSNN-CGDFVLLSNLYAAY-ERWDD 431 (582)
Q Consensus 363 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 431 (582)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ..+++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555554 44565 5678888888877 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 007998 432 VGRVRKAMKNRDVKKVPG 449 (582)
Q Consensus 432 a~~~~~~m~~~~~~~~~~ 449 (582)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877664443
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.94 E-value=0.028 Score=46.62 Aligned_cols=88 Identities=14% Similarity=-0.021 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhHcCCccChhhHHhhhhHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHHHHHH
Q 007998 329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG---RLQEACDIVKSV-SMG-T--DMVLWQTLLGACQLYGDVEMAEIA 401 (582)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~ 401 (582)
..+++.|.+..+.+. ++..+.-.+..++.+.+ +++++..++++. ... | +...+..|.-+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344455555444332 45555555566666666 444666666654 212 3 345666777888999999999999
Q ss_pred HHHHHHcCCCCchhHH
Q 007998 402 SRKLVEMGSNNCGDFV 417 (582)
Q Consensus 402 ~~~~~~~~p~~~~~~~ 417 (582)
++++++.+|++..+..
T Consensus 94 ~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHhcCCCCHHHHH
Confidence 9999999998865443
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.93 E-value=0.031 Score=42.37 Aligned_cols=69 Identities=7% Similarity=-0.026 Sum_probs=51.7
Q ss_pred ccChhhHHhhhhHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998 344 KPNMKHYGSVVDLLGRAGR---LQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN 412 (582)
Q Consensus 344 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 412 (582)
+.+...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...++++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3456666667776654444 68888888876 4445 67777778888899999999999999999998873
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.89 E-value=0.05 Score=42.16 Aligned_cols=69 Identities=13% Similarity=0.024 Sum_probs=48.7
Q ss_pred HhhhhHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998 351 GSVVDLLGRAGRLQEACDIVKSV-----S----MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419 (582)
Q Consensus 351 ~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 419 (582)
-.|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...+++++++.|+++.+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34455555555555555555433 0 123567888899999999999999999999999999887665444
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.87 E-value=2.1 Score=44.68 Aligned_cols=251 Identities=9% Similarity=-0.011 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 007998 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 224 (582)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~ 224 (582)
.-+.-+..+.+.+++......+.. +..+...--....+....|+..+|......+-..| ...+.....++..+.+.|
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHCC
Confidence 344455566667777777765555 33344433444555666677666666666665555 333344445555555444
Q ss_pred CcHHH--HHHHHHHHHcC-----------CCCch-hHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHH---HHHHHHHH
Q 007998 225 AWKEG--DKIHEYIREER-----------LDMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT---WNTMVMAF 287 (582)
Q Consensus 225 ~~~~a--~~~~~~~~~~~-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~---~~~li~~~ 287 (582)
.+... .+=+..+...| ++++. .....++..+.+ ...+....... .++... +..-+.-+
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~--~~~~~~~~~~~~~~~rl 225 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT--GATDFTRQMAAVAFASV 225 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS--CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc--CCChhhHHHHHHHHHHH
Confidence 33221 11111111111 11111 122222222221 12222222221 222221 11112223
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCH
Q 007998 288 AVHGDGPRALELFEQMGRAGVKPDDVSY----LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL 363 (582)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 363 (582)
++ .+.+.|..+|....... ..+.... ..+.......+...++...+....... ++.....-.+..-.+.|++
T Consensus 226 ar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 226 AR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp HH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCH
T ss_pred Hh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCH
Confidence 33 37788888888876543 2233222 222223333442445555555544422 3332233344444577899
Q ss_pred HHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998 364 QEACDIVKSVSMGT-D-MVLWQTLLGACQLYGDVEMAEIASRKLVE 407 (582)
Q Consensus 364 ~~A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 407 (582)
+.|...|+.|+..+ + ..-.-=+..+....|+.++|..+|+++.+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999885433 2 22122234466778899999998888864
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.04 E-value=0.86 Score=36.46 Aligned_cols=85 Identities=7% Similarity=-0.046 Sum_probs=63.3
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHH
Q 007998 155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE 234 (582)
Q Consensus 155 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~ 234 (582)
.||++......+-.+.. +....+..+......|+-++-.+++..+.... +|++.....+.+||.+.|+..++.+++.
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~--~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC--CCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 45555555555554432 33455666788888999999999988865443 7889999999999999999999999999
Q ss_pred HHHHcCCC
Q 007998 235 YIREERLD 242 (582)
Q Consensus 235 ~~~~~~~~ 242 (582)
++-+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 98888854
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.73 E-value=1.9 Score=39.92 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=67.1
Q ss_pred cCCHHHHHHHHhcccCCCCH--HHHHHHHHH-HHhC--CC------hhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHH
Q 007998 258 CGLLDKAFEVFDNIKCRKSL--VTWNTMVMA-FAVH--GD------GPRALELFEQMGRAGVKPD---DVSYLAALCACN 323 (582)
Q Consensus 258 ~g~~~~A~~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~ 323 (582)
.|+..+-.+.+.+.. +.|+ ..|..++.+ +... |. ...|...+++..+ +.|+ ...|..+...|.
T Consensus 134 ~~~~~~~~~~l~~~~-~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 134 SGDEQRLHKVLSRCT-RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp SSCHHHHHHHHTTCC-GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcC-ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 344444455555554 4443 357666553 3332 32 2456666666665 3566 356777777777
Q ss_pred cC-----CCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhc-CCHHHHHHHHHhC
Q 007998 324 HA-----GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA-GRLQEACDIVKSV 373 (582)
Q Consensus 324 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 373 (582)
.. |+.++|.+.|++.++.+..-+..++....+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 73 78888888888877733222355666666777663 7777777777654
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.39 E-value=3.1e-05 Score=75.99 Aligned_cols=263 Identities=11% Similarity=0.105 Sum_probs=162.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 007998 142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 221 (582)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~ 221 (582)
.+.+|..|..++.+.+++.+|.+.|- ...|+..|..+|....+.|.+++-+..+.-.++.. -++..=+.++-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHH
Confidence 34567777777777777777776653 34455667777777777788877777766554442 22233346677777
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 007998 222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301 (582)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (582)
+.+++.+-.+++ -.||..-...+.+-+...|.++.|.-+|..++ -|..|...+.+.|++.+|.+.-+
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is------N~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC------CCTTTSSSSSSCSGGGSSTTTTT
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766544333 23555555667777777777777777777665 13334444555666665554332
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCH
Q 007998 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDM 379 (582)
Q Consensus 302 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~ 379 (582)
+ .-+..||-.+-.+|...+.+..|...--.++ ...+....++..|-+.|.+++-+.+++.- +.+ ...
T Consensus 195 K------Ans~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHm 263 (624)
T 3lvg_A 195 K------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLERAHM 263 (624)
T ss_dssp T------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCH
T ss_pred h------cCChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhH
Confidence 2 2345678888888888888776654433333 22233446788888889998888888864 433 477
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH-cC-CC------CchhHHHHHHHHHhcCCchHHHH
Q 007998 380 VLWQTLLGACQLYGDVEMAEIASRKLVE-MG-SN------NCGDFVLLSNLYAAYERWDDVGR 434 (582)
Q Consensus 380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~-p~------~~~~~~~l~~~~~~~g~~~~a~~ 434 (582)
.+++-|.-.|++. ++++-.+.++.... ++ |. ....|.-+.-.|.+-..|+.|..
T Consensus 264 GmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 264 GMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 8888888888776 34544444443221 12 21 24456667777777777776653
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.25 E-value=2.1 Score=36.25 Aligned_cols=123 Identities=9% Similarity=-0.007 Sum_probs=83.2
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998 56 NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135 (582)
Q Consensus 56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 135 (582)
|+++.|..+.+.+ .+...|..|.....+.|+++-|.+.|.+... |..+.-.|...|+.+.-..+-+...
T Consensus 19 g~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 19 GNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp TCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8899998888776 4677899999999999999999999988743 4555555666778777666655555
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200 (582)
Q Consensus 136 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 200 (582)
..| . ++.....+.-.|+++++.++|.+....+.. .......|..+.|.++..++
T Consensus 88 ~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 88 TRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 554 2 344444566678888888888765442211 11122356666677776655
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.06 E-value=0.22 Score=39.63 Aligned_cols=91 Identities=13% Similarity=-0.037 Sum_probs=50.0
Q ss_pred cCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChH
Q 007998 324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE---ACDIVKSV-SMG-T--DMVLWQTLLGACQLYGDVE 396 (582)
Q Consensus 324 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~ 396 (582)
....+..+.+.|......|. ++..+--.+..++.+.....+ +..++++. ... | .......|.-++.+.|+++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 33445555555555554332 555554455566666665554 56666654 222 2 2223344555666777777
Q ss_pred HHHHHHHHHHHcCCCCchh
Q 007998 397 MAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 397 ~a~~~~~~~~~~~p~~~~~ 415 (582)
+|.+.++.+++.+|+|..+
T Consensus 92 ~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCCCHHH
Confidence 7777777777777766443
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.06 E-value=0.49 Score=37.66 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHhHcCCcc--ChhhHHhhhhHHhhcCCHHHH
Q 007998 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD---GVRLFNSMANCGVKP--NMKHYGSVVDLLGRAGRLQEA 366 (582)
Q Consensus 292 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 366 (582)
....+.+-|.+....|. |+..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444555555544443 555554455556666665554 777777766632 12 223333455667777777777
Q ss_pred HHHHHhC-CCCC
Q 007998 367 CDIVKSV-SMGT 377 (582)
Q Consensus 367 ~~~~~~~-~~~p 377 (582)
.+.++.+ ..+|
T Consensus 94 ~~~~~~lL~~eP 105 (126)
T 1nzn_A 94 LKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 7777765 3344
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.82 E-value=2.1 Score=34.65 Aligned_cols=104 Identities=8% Similarity=-0.079 Sum_probs=68.7
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-chhHHHHHHHHHhcCCchHHHHHHH
Q 007998 363 LQEACDIVKSV-SMGTDMVLWQTLLGACQLYGD---VEMAEIASRKLVEMGSNN-CGDFVLLSNLYAAYERWDDVGRVRK 437 (582)
Q Consensus 363 ~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 437 (582)
+....+-|.+- ...|+..+--.+..++.+..+ ..+++.+++.+...+|.+ ......|+-++.+.|++++|++..+
T Consensus 22 L~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 22 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp HHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444433 334666665566666666554 457888888888877743 4456678888889999999998888
Q ss_pred HHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 007998 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYA 492 (582)
Q Consensus 438 ~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 492 (582)
.+.+.. |....+...-..+..+|...|++
T Consensus 102 ~lL~~e--------------------------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 102 TLFEHE--------------------------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp HHHHTC--------------------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHhcC--------------------------CCcHHHHHHHHHHHHHHHHhchh
Confidence 887654 33445555555566777777764
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.70 E-value=0.28 Score=37.71 Aligned_cols=66 Identities=12% Similarity=-0.077 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG-------SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
+..-...|...+...|+++.|..-++++++.. +..+..+..|+.+|.+.|++++|...+++..+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44556678888999999999999999998852 3456788999999999999999999999887643
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.2 Score=53.30 Aligned_cols=54 Identities=17% Similarity=0.090 Sum_probs=50.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
.-|...|+++.|+++.+++...-|.+-.++..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 456788999999999999999999999999999999999999999999998874
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.43 E-value=0.00052 Score=67.52 Aligned_cols=257 Identities=13% Similarity=0.111 Sum_probs=159.1
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998 56 NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135 (582)
Q Consensus 56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 135 (582)
++++.|...-++...| ..|..|..+....+...+|++.|-+. -|+..|..++.++.+.|.+++-...+..+.
T Consensus 39 ~~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 39 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CCSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred cccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4555555555555444 46888999998888888888776432 255678888999989999888888776665
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC-----------
Q 007998 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG----------- 204 (582)
Q Consensus 136 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------- 204 (582)
+. ..++.+=+.|+-+|++.+++.+-++++. .||+.-...+..-|...|.++.|.-+|..+-.-.
T Consensus 111 k~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 111 KK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp TT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred HH--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 55 3355667788999999988777655443 2444444455555666666666555554431100
Q ss_pred --------CCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CC
Q 007998 205 --------VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CR 274 (582)
Q Consensus 205 --------~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~ 274 (582)
-...++.||-.+-.+|...+.+..|...--.++-.. .-...++..|-+.|.+++-+.+++.-. .+
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglEr 260 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLER 260 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTT
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Confidence 002345678888888888887776654443333211 112245666788888888888887533 25
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007998 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS 337 (582)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 337 (582)
.-...++-|.-.|++- ++++-.+.++..-. +.| .-.++++|.+...|.++.-++..
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHhc
Confidence 5677788887777765 34554444433211 111 12356677777777666655543
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.82 E-value=1.4 Score=36.16 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=51.4
Q ss_pred CCCChhHHHHHHHHHHcCCCc------hHHHHHHHHHHhCCCCCChh----HHHHHHHHH---HhcCChHHHHHHHHHHH
Q 007998 69 NAPSTNDFNAVLRGLAHSSKP------TNAVLWYRQMLRGSHRSDAL----TCSFALKAC---ARVLALFETLQIHSHVL 135 (582)
Q Consensus 69 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~---~~~~~~~~a~~~~~~~~ 135 (582)
.+.|..+|-..+...-+.|++ ++.+++|++.... ++|+.. .|..+.--| ...+++++|+++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356788888888888888888 7777888877664 555431 122222111 12355666666666665
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 007998 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVF 166 (582)
Q Consensus 136 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 166 (582)
+.+-.. ..+|......=.+.|++..|++++
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkIL 117 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLL 117 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 542121 333433333333444444444443
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.42 E-value=1.3 Score=36.34 Aligned_cols=54 Identities=15% Similarity=0.045 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 361 GRLQEACDIVKSV---SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 361 g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
++.++|.++|+.+ ..+- ..+|-....--.++|++..|.+++.+.+.+.|.+...
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 4555555555544 1111 6677777777788999999999999999998865443
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.99 E-value=24 Score=38.53 Aligned_cols=304 Identities=13% Similarity=0.044 Sum_probs=158.3
Q ss_pred HHHHHHHHcCCCchHH-HHH-HHHHHhCCCCCChhHHHHHH-HHHHhcCChHHHHHHHHHHHHcC--CCCchHHHHHHHH
Q 007998 77 NAVLRGLAHSSKPTNA-VLW-YRQMLRGSHRSDALTCSFAL-KACARVLALFETLQIHSHVLRHG--FLADALLGTTLLD 151 (582)
Q Consensus 77 ~~li~~~~~~g~~~~A-~~~-~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~ 151 (582)
.++..++...|-..+. +.. ..++-+. + +..-+..+. -+....|+.++++++++..+..+ -.+.......+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 4567788888865544 221 2333332 1 222232222 34567788888888776655421 1222233334444
Q ss_pred HHHhcCCHHHHHHHHhhcC-CCC----------hhHHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCCHH--HHHHHH
Q 007998 152 VYAKVGEIVSAKKVFDEMG-VRD----------IASWNALIAGLAQGNL-ASEAVDLFKRMKMEGVFKPNEV--TVLGAL 217 (582)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~-~~~----------~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~pd~~--t~~~ll 217 (582)
+...+|..+++..++.... ..+ +..-.++.-|.+-.|. -+++.+.+..+.... .+... .-.++.
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALG 497 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND--SATSGEAAALGMG 497 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHh
Confidence 5556666666766554432 112 1223334444444443 346677777776543 21111 222334
Q ss_pred HHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHH-HHH---HHHHHHHhCCCh
Q 007998 218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV-TWN---TMVMAFAVHGDG 293 (582)
Q Consensus 218 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~---~li~~~~~~g~~ 293 (582)
..+...|+.+....++..+.+.. ..++.-..++.-++.-.|+.+.+..+.+.+....+.. -|. ++..+|+-.|+.
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 44567778777777777776542 2122222333333446788888887777765223332 333 344567778887
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCH-HHHHHHHHh
Q 007998 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL-QEACDIVKS 372 (582)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~ 372 (582)
....+++..+.+. ...+......+.-++...|+.+.+.++++.+.+.+ .|.+..-.++.-+....|.. .+|.+.+..
T Consensus 577 ~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 6666688888764 12222222222234445666666777777666633 45554444444444444443 577778877
Q ss_pred CCCCCCHHHHHHHHHH
Q 007998 373 VSMGTDMVLWQTLLGA 388 (582)
Q Consensus 373 ~~~~p~~~~~~~ll~~ 388 (582)
+...+|..+-..-+.+
T Consensus 655 L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 655 LTKDPVDFVRQAAMIA 670 (963)
T ss_dssp HHTCSSHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHH
Confidence 7445555444333333
No 241
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.87 E-value=4.5 Score=30.24 Aligned_cols=89 Identities=18% Similarity=0.141 Sum_probs=66.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 200 (582)
Q Consensus 121 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 200 (582)
...-++|.-+-+.+...+- ...+--.-+..+.+.|++++|..+.+....||...|-++-.. +.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3456788888888777653 444444445667899999999999999999999999887654 678888888888788
Q ss_pred HHcCCCCCCHHHHHH
Q 007998 201 KMEGVFKPNEVTVLG 215 (582)
Q Consensus 201 ~~~g~~~pd~~t~~~ 215 (582)
...| .|....|..
T Consensus 96 a~sg--~p~~q~Fa~ 108 (116)
T 2p58_C 96 ARSQ--DPRIQTFVN 108 (116)
T ss_dssp TTCC--CHHHHHHHH
T ss_pred HhCC--CHHHHHHHH
Confidence 7777 565555543
No 242
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.42 E-value=4.2 Score=30.34 Aligned_cols=88 Identities=16% Similarity=0.074 Sum_probs=67.2
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK 201 (582)
Q Consensus 122 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 201 (582)
..-++|.-+-+.+...+- ...+--.-+..+.+.|++++|..+.+....||...|-++-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456788888887777653 44444444566789999999999999999999999988765 47888888888888888
Q ss_pred HcCCCCCCHHHHHH
Q 007998 202 MEGVFKPNEVTVLG 215 (582)
Q Consensus 202 ~~g~~~pd~~t~~~ 215 (582)
..| .|....|..
T Consensus 96 ~sg--~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS--DPALADFAA 107 (115)
T ss_dssp TCS--SHHHHHHHH
T ss_pred hCC--CHHHHHHHH
Confidence 877 566555543
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.86 E-value=4.1 Score=32.51 Aligned_cols=67 Identities=4% Similarity=-0.107 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCC-CchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 376 GTDMVLWQTLLGACQLYGD---VEMAEIASRKLVEMGSN-NCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 376 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+|. ....+..|+-++.+.|++++|++..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3555555455555555543 45677777777777763 3445667777788888888888887777654
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.43 E-value=16 Score=34.14 Aligned_cols=168 Identities=14% Similarity=0.097 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHH----HHHHHHhcCCCCCHHHHHHHHHH
Q 007998 246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE----LFEQMGRAGVKPDDVSYLAALCA 321 (582)
Q Consensus 246 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~t~~~ll~a 321 (582)
..|.++..=|.+.+++++|.+++..-. ..+.++|+...|-+ +.+-..+.++++|......++..
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456667777888899999988875433 23455666655544 34455556788888777777766
Q ss_pred HHcCCCHH-HHHHHHHHHhH----cC--CccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--
Q 007998 322 CNHAGLVD-DGVRLFNSMAN----CG--VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY-- 392 (582)
Q Consensus 322 ~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~-- 392 (582)
+.....-+ .=.++.+.+++ .| ..-+......+...|.+.|++.+|+..|- .+..-|...+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcC
Confidence 65422111 12334444443 22 12356667778888889999999988776 32112455666666555443
Q ss_pred -CChHHHHHHHHHHHHcCCCCchhHH-HHHHHHHhcCCchHHHHHHHHHHh
Q 007998 393 -GDVEMAEIASRKLVEMGSNNCGDFV-LLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 393 -g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
|...++ ..|. ..+--|.-.|+...|..+++...+
T Consensus 181 ~~~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 181 DIEDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCCHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCCcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333322 2222 222235567889999998887653
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.02 E-value=1.8 Score=42.54 Aligned_cols=68 Identities=13% Similarity=0.009 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCccCC
Q 007998 381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK-----NRDVKKVP 448 (582)
Q Consensus 381 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~ 448 (582)
....++.++...|+++++...++++...+|-+...+..|..+|.+.|+..+|.+.|+... +.|+.|.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 345567778889999999999999999999999999999999999999999999888764 35777655
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.50 E-value=41 Score=36.72 Aligned_cols=119 Identities=10% Similarity=0.049 Sum_probs=49.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHH--HHHHHHHhcCCH
Q 007998 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN--AVIDMYAKCGLL 261 (582)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~y~~~g~~ 261 (582)
|.-.|+.+-...++..+.+.. ..+..-+..+.-++...|+.+.+..+.+.+... ..|...... ++.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCH
Confidence 334455554555555444321 111112222222333556666666665555543 122222221 223345555665
Q ss_pred HHHHHHHhcccCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 262 DKAFEVFDNIKCRKS--LVTWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 262 ~~A~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
....+++..+...++ +...-.+.-++...|+.+.+.++++.+.+
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 555555555431222 22222222233345555555555554444
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.07 E-value=8.9 Score=28.65 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=66.3
Q ss_pred CCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303 (582)
Q Consensus 224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (582)
...++|..|-+.+...+. ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|-. .+.|..+++...+.++
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 457888888888877653 34444444566789999999999999998 999999987754 4778888888888888
Q ss_pred HhcCCCCCHHHHHH
Q 007998 304 GRAGVKPDDVSYLA 317 (582)
Q Consensus 304 ~~~g~~p~~~t~~~ 317 (582)
..+| .|....|..
T Consensus 95 a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 95 GGSS-DPALADFAA 107 (115)
T ss_dssp HTCS-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7765 555555543
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.68 E-value=9.5 Score=28.57 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=66.0
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 007998 223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ 302 (582)
Q Consensus 223 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (582)
....++|..|-+.+...+. ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|-. .+.|..+++...+.+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3467888888888877653 34444444566789999999999999998 999999988754 467888888888878
Q ss_pred HHhcCCCCCHHHHHH
Q 007998 303 MGRAGVKPDDVSYLA 317 (582)
Q Consensus 303 m~~~g~~p~~~t~~~ 317 (582)
+..+| .|....|..
T Consensus 95 la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 95 LARSQ-DPRIQTFVN 108 (116)
T ss_dssp HTTCC-CHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 77765 555555543
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.64 E-value=23 Score=33.07 Aligned_cols=168 Identities=8% Similarity=0.040 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHH----HHHHHHcCCCCCCHHHHHHHHHHH
Q 007998 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL----FKRMKMEGVFKPNEVTVLGALAAC 220 (582)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~pd~~t~~~ll~a~ 220 (582)
.+.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.++ ++|......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~-~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEV-KVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHH
Confidence 4566667788889999998876442 3445667777666554 444556677 88888888887777
Q ss_pred hccCCcH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhC---
Q 007998 221 GHLGAWK-EGDKIHEYIR----EER--LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH--- 290 (582)
Q Consensus 221 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~--- 290 (582)
.....-+ .=.++...++ +.| ..-++.....+...|.+.|++.+|+..|-.-. ..|...+..|+.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCC
Confidence 6543211 1234444444 332 22367888899999999999999999886332 23455666655544443
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998 291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340 (582)
Q Consensus 291 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 340 (582)
|...++-- ..-..++ -|...+++..|..+|+...+
T Consensus 182 ~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 43333211 1112222 34457888888888887664
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.89 E-value=25 Score=39.90 Aligned_cols=163 Identities=11% Similarity=0.018 Sum_probs=92.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcH
Q 007998 148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK 227 (582)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~ 227 (582)
.++..+.+.+..+.|.++..-.+ .+...--.+...|...|++++|.+.|.+.- .|+ ..+... .....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~-~~~~~l----------~~~~~ 883 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVL-YSHTSQ----------FAVLR 883 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSC-TTCCCS----------CSSHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhh-cccchh----------hhhhc
Confidence 35555666677777766554443 344444556677888888888888887652 122 111000 00000
Q ss_pred HHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--C-CCC--H--HHHHHHHHHHHhCCChhHHHH
Q 007998 228 EGDKIHEYIREER--LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--C-RKS--L--VTWNTMVMAFAVHGDGPRALE 298 (582)
Q Consensus 228 ~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~--~--~~~~~li~~~~~~g~~~~A~~ 298 (582)
. ...+.... ...-..-|..++..+.+.|.++.+.++-.... . ..+ . ..|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 11111111 11123456677778888888877776554221 1 122 1 258889999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCCHH
Q 007998 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVD 329 (582)
Q Consensus 299 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 329 (582)
.+-.+.....+ ...+..++...+..|..+
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 88877654333 345566666666655544
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.59 E-value=7 Score=29.40 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=38.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420 (582)
Q Consensus 370 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 420 (582)
+-.+..-|++.+..+.+.+|++.+++..|.++++-+...-.+....|-.++
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 334466789999999999999999999999999988776543444555443
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.28 E-value=31 Score=32.55 Aligned_cols=167 Identities=13% Similarity=0.092 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHH----HHHHHhcCCCCCHHHHHHHHHHH
Q 007998 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL----FEQMGRAGVKPDDVSYLAALCAC 322 (582)
Q Consensus 247 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~ 322 (582)
.|.++..=|.+.+++++|.+++..-. ..+.++|+..-|-++ .+-..+.++++|..+...++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45566777888999999988775433 234455665544433 35555667888887777777766
Q ss_pred HcCCCHH-HHHHHHHHHhH----cC--CccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 007998 323 NHAGLVD-DGVRLFNSMAN----CG--VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV 395 (582)
Q Consensus 323 ~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 395 (582)
.....-+ .=.++.+++++ .| ..-+......+...|.+.+++.+|+..|- .+..+++..+..++.-+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-
Confidence 6544311 11334444443 22 22355666778889999999999998884 3434445677666655544433
Q ss_pred HHHHHHHHHHHHcCCCCchhHH-HHHHHHHhcCCchHHHHHHHHHHh
Q 007998 396 EMAEIASRKLVEMGSNNCGDFV-LLSNLYAAYERWDDVGRVRKAMKN 441 (582)
Q Consensus 396 ~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 441 (582)
|.....|. ..+--|.-.++...|..+++...+
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22233333 233345677888999888776654
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.72 E-value=21 Score=38.03 Aligned_cols=53 Identities=13% Similarity=-0.074 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 007998 374 SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE 427 (582)
Q Consensus 374 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (582)
..+.+..-|..|.....+.+++++|.+.|+..+... -++.+...|+.+|.+.+
T Consensus 608 ~~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 608 DEKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred hcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence 445678889999998888999999999999998754 47788889999998766
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.40 E-value=5.7 Score=38.81 Aligned_cols=58 Identities=10% Similarity=-0.046 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHH
Q 007998 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237 (582)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 237 (582)
..++..+...|++.+|+..+..+.... +.+...+..+|.++.+.|+..+|.+.|+...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555666666666666666665554 4566666666666666666666666666543
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.33 E-value=34 Score=32.30 Aligned_cols=168 Identities=11% Similarity=0.049 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCCHHHHHHHHHHH
Q 007998 145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF----KRMKMEGVFKPNEVTVLGALAAC 220 (582)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~~pd~~t~~~ll~a~ 220 (582)
.+.++..=|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.++ ++|..+...++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~-~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQ-RVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHH
Confidence 445566668889999999887643 234456667766655544 55556777 88888888888777
Q ss_pred hccCCcH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCCh
Q 007998 221 GHLGAWK-EGDKIHEYIR----EER--LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG 293 (582)
Q Consensus 221 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (582)
.....-+ .=..+.+.++ +.| ..-|+.....+...|.+.+++.+|+..|-.-. .+++..+..|+.-+...+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~-~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGT-KESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSC-TTHHHHHHHHHHHHHHTSCG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcC-CchHHHHHHHHHHHHHhcCC
Confidence 7665422 1233444443 333 33467788889999999999999999985322 33446776666555444432
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998 294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN 340 (582)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 340 (582)
.++ |.+.-..++ -|...+++..|..+++...+
T Consensus 184 ~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 222 222222333 35557888888887766654
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.62 E-value=9.2 Score=31.87 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=11.7
Q ss_pred hhhHHhhcCCHHHHHHHHHhCC
Q 007998 353 VVDLLGRAGRLQEACDIVKSVS 374 (582)
Q Consensus 353 li~~~~~~g~~~~A~~~~~~~~ 374 (582)
+..+|.+.+++++|+.+++.+|
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHCCHHHHHHHHhcCC
Confidence 4444555555555555555553
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.81 E-value=9.4 Score=28.73 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhh
Q 007998 292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVD 355 (582)
Q Consensus 292 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 355 (582)
+.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+-++. .| +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3446667777777778899999999999999999999999999998887 43 33456666653
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.76 E-value=22 Score=28.76 Aligned_cols=36 Identities=25% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
....-|.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 344456678999999999999999999999988544
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.42 E-value=15 Score=30.58 Aligned_cols=114 Identities=10% Similarity=-0.019 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC-----CCCh-------hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-CHHH
Q 007998 146 GTTLLDVYAKVGEIVSAKKVFDEMG-----VRDI-------ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP-NEVT 212 (582)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p-d~~t 212 (582)
+-.-+..+...|.++.|+-+.+.+. .+++ .+...+..++...|++..|...|++.++..-.-+ +..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344556666777777776655532 2332 1445556667777777777777777543211011 1111
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc
Q 007998 213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272 (582)
Q Consensus 213 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 272 (582)
.+++.. ...... ......+..+---+..+|.+.|+.++|+.+++.++
T Consensus 103 ~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111100 000000 01122344555557778888888888888888776
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.60 E-value=55 Score=32.43 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhc--CCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHhH--cCC--ccC--h
Q 007998 279 TWNTMVMAFAVHGDGPRALELFEQMGRA--GVKPDD---VSYLAALCACNHAGLVDDGVRLFNSMAN--CGV--KPN--M 347 (582)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~--~~~--~~~--~ 347 (582)
....|...|...|++.+|..++.++... |..+.. ..+...+..|...+++..|..++.++.. ... .|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888999999999999988653 222221 3566677889999999999999998753 222 222 3
Q ss_pred hhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998 348 KHYGSVVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~~~~~~ 373 (582)
..|.+++..+...+++.+|.+.|.+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46778888889999999998877665
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.39 E-value=59 Score=32.18 Aligned_cols=150 Identities=11% Similarity=0.045 Sum_probs=69.4
Q ss_pred CCchHHHHHHHHHHh-----CCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCchHH--HHHHHHHHHhcCC
Q 007998 87 SKPTNAVLWYRQMLR-----GSHRSDALTCSFALKACARVLALFETLQIHSHVLR-HGFLADALL--GTTLLDVYAKVGE 158 (582)
Q Consensus 87 g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~--~~~li~~y~~~g~ 158 (582)
|++.+|++.+..+.+ .+..........++..|...++++...+.+..+.+ +|..+...+ -+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 455666665554432 12233445566677777777777776665555443 232221111 1112222222222
Q ss_pred H--HHHHHHHhhcCC---C-------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhc
Q 007998 159 I--VSAKKVFDEMGV---R-------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE----VTVLGALAACGH 222 (582)
Q Consensus 159 ~--~~A~~~f~~m~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~----~t~~~ll~a~~~ 222 (582)
. +.-..+.+.... . .......|...|-..|++.+|.+++..+...-....+. ..+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 1 122222222211 1 11223456666777777777777777765431101111 233444445555
Q ss_pred cCCcHHHHHHHHHH
Q 007998 223 LGAWKEGDKIHEYI 236 (582)
Q Consensus 223 ~~~~~~a~~~~~~~ 236 (582)
.+++..|..+...+
T Consensus 190 ~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 190 KGDYSQATVLSRKI 203 (445)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555544
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.28 E-value=27 Score=27.78 Aligned_cols=71 Identities=15% Similarity=0.059 Sum_probs=41.8
Q ss_pred cChhhHHhhhhHHhhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998 345 PNMKHYGSVVDLLGRAGRLQ---EACDIVKSV-SMGT--DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415 (582)
Q Consensus 345 ~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 415 (582)
|+..+--.+..++.+....+ ++..++++. ...| ....+--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 33333333444444444332 344444443 1123 24455566678888899999999999999988887544
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.16 E-value=37 Score=29.24 Aligned_cols=103 Identities=9% Similarity=0.144 Sum_probs=69.5
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHhcCCchHHHHHHH
Q 007998 364 QEACDIVKSV-SMGTDMV---LWQTLLGACQLYGDVEMAEIASRKLVEMG--SNNCGDFVLLSNLYAAYERWDDVGRVRK 437 (582)
Q Consensus 364 ~~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 437 (582)
+++...|... ..+-|+. .|-.++..| ..++...+..+|..|...+ ..-+..|...+..+...|++.+|..+++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444 3344654 344444433 2455778999999998865 5667889999999999999999999999
Q ss_pred HHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 007998 438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYA 492 (582)
Q Consensus 438 ~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 492 (582)
.=.+++-.| .+.......+...+|...+++
T Consensus 140 ~GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 140 LGAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCC
Confidence 887776543 334444555666777777763
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.03 E-value=90 Score=35.33 Aligned_cols=167 Identities=11% Similarity=0.037 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCC
Q 007998 112 SFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGN 188 (582)
Q Consensus 112 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g 188 (582)
..++..+...+..+.+.++... .+.++...-.+..+|..+|++++|...|.+.... +... ..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l----------~~ 880 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ----------FA 880 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS----------CS
T ss_pred HHHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh----------hh
Confidence 3455556666777666654433 2334444445667899999999999999887432 0000 00
Q ss_pred ChhHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHH
Q 007998 189 LASEAVDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN----VVVCNAVIDMYAKCGLLDK 263 (582)
Q Consensus 189 ~~~~A~~~~~~m~~~g~-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~ 263 (582)
...+ +..+..... ...-..-|..++..+.+.+.++.+.++-...++.....+ ...|..+.+.+...|++++
T Consensus 881 ~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0000 111111110 022234466677777777777777777766665432222 2367778888888899998
Q ss_pred HHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHH
Q 007998 264 AFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRAL 297 (582)
Q Consensus 264 A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~ 297 (582)
|...+-.++ ...-......++...+..|+.+.-+
T Consensus 957 Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 957 AHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp GGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 888887775 1223445667777777777765443
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.47 E-value=18 Score=28.79 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=41.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998 365 EACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS 420 (582)
Q Consensus 365 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 420 (582)
+++.-+-.+..-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|-.++
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 33444444567799999999999999999999999999998876543444565443
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.63 E-value=34 Score=27.28 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHH
Q 007998 293 GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVK 371 (582)
Q Consensus 293 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 371 (582)
.-+..+-++.+....+.|+.......|.+|-+.+++..|.++|+-++. .| +...+|..+++ +-...++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq---------ElkPtl~ 137 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ---------ELRPTLN 137 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH---------HHhhHHH
Confidence 335666677777778899999999999999999999999999998887 43 34556766653 4455556
Q ss_pred hCCC
Q 007998 372 SVSM 375 (582)
Q Consensus 372 ~~~~ 375 (582)
++++
T Consensus 138 ELGI 141 (152)
T 2y69_E 138 ELGI 141 (152)
T ss_dssp HHTC
T ss_pred HhCC
Confidence 5543
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.75 E-value=69 Score=29.07 Aligned_cols=119 Identities=13% Similarity=0.043 Sum_probs=57.9
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcC--CccChhhHHhhhhHHhhcCCHH
Q 007998 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG--VKPNMKHYGSVVDLLGRAGRLQ 364 (582)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~ 364 (582)
..+.|+.++|++....-++.. +-|...=..++..+|-.|+++.|.+-++...+.. ..|....|..+|.+ +
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a-------E 78 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-------A 78 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------H
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------H
Confidence 445666677776666655541 2234444455566666777777777666666521 11222233333322 1
Q ss_pred HHH-HHHHhC--CCCC-CHHHHHH-HHHHH--HhcCChHHHHHHHHHHHHcCCCCc
Q 007998 365 EAC-DIVKSV--SMGT-DMVLWQT-LLGAC--QLYGDVEMAEIASRKLVEMGSNNC 413 (582)
Q Consensus 365 ~A~-~~~~~~--~~~p-~~~~~~~-ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~ 413 (582)
... ++|..- |.-+ .+.-|.. |+.+. ...|+.+.|.++-.++.+.-|..+
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 111 223211 1000 1222433 33333 345777777777777777666544
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=67.12 E-value=58 Score=27.61 Aligned_cols=60 Identities=13% Similarity=0.040 Sum_probs=26.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304 (582)
Q Consensus 243 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 304 (582)
++..+-...+.++.+.|+.+....+...+. .++...-...+.++...|. .++...+..+.
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 344444445555555554333333333333 4444444444444444443 23444444443
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.37 E-value=42 Score=27.49 Aligned_cols=80 Identities=8% Similarity=-0.049 Sum_probs=51.9
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 364 QEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG--SNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 364 ~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
+.+.+.|... ..+.|+.....-+.-.... +.+..+|..|...+ ...+..|...+..+...|++.+|..+++.=.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555444 3344555433333222222 33788888888754 5567788899999999999999999998877
Q ss_pred hCCCcc
Q 007998 441 NRDVKK 446 (582)
Q Consensus 441 ~~~~~~ 446 (582)
+++-.|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 766543
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.42 E-value=65 Score=27.56 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=26.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998 243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 243 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
++..+-...+.++.+.|..+....+...+. .++...-...+.++.+.+. .++...+.++.+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 344444444555555544333223333333 4454444444455544443 334444444433
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.16 E-value=57 Score=27.07 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=52.9
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 364 QEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG--SNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 364 ~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
+.+...|..- ..+.|+.....-+..-...+ ....+|..|...+ ..-+..|...+..+...|++.+|.++++.=.
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLCN---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHCS---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444443 33446554443332222223 3677888888755 5567788999999999999999999999888
Q ss_pred hCCCcc
Q 007998 441 NRDVKK 446 (582)
Q Consensus 441 ~~~~~~ 446 (582)
+++-.|
T Consensus 124 ~~~A~P 129 (164)
T 2wvi_A 124 QQKAEP 129 (164)
T ss_dssp HTTCBS
T ss_pred HcCCCc
Confidence 776553
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.11 E-value=51 Score=32.43 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccc-----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998 247 VCNAVIDMYAKCGLLDKAFEVFDNIK-----CRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303 (582)
Q Consensus 247 ~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (582)
+...+.+.|.++|+++.|.+.|.++. ...-...+-.+|..+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34455666666666666666665554 1112233444455555555555555555444
No 273
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=61.85 E-value=99 Score=32.33 Aligned_cols=22 Identities=14% Similarity=-0.040 Sum_probs=18.0
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC
Q 007998 357 LGRAGRLQEACDIVKSVSMGTD 378 (582)
Q Consensus 357 ~~~~g~~~~A~~~~~~~~~~p~ 378 (582)
+...|+++.|++.++++++-|.
T Consensus 548 ~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 3678999999999999877663
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=60.82 E-value=19 Score=32.69 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=47.0
Q ss_pred hHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998 355 DLLGRAGRLQEACDIVKS-VSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC 413 (582)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 413 (582)
..+.+.|.+++|++.+.. +.-.| |...-..|+..++-.|++++|.+-++...+++|...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 446788999999887764 44455 677777788899999999999999999999998643
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.64 E-value=82 Score=26.84 Aligned_cols=161 Identities=15% Similarity=0.059 Sum_probs=78.6
Q ss_pred HHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998 64 LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143 (582)
Q Consensus 64 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 143 (582)
+.+.+..+|...-...+..+.+.|.. .+...+..+.. .+|...-...+.++...++.+.. ..+..++ -.++.
T Consensus 24 L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l---~~~~~ 95 (211)
T 3ltm_A 24 YIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKAL---KDEDG 95 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHT---TCSSH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHH---cCCCH
Confidence 33344445555555555555555543 34444444443 23555555555666665553322 2222222 13455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Q 007998 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 223 (582)
Q Consensus 144 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~ 223 (582)
.+....+.++.+.|+.+....+.+.+..++...-...+.++.+.|..+ ++..+..+.. .+|...-...+.++.+.
T Consensus 96 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 96 WVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHh
Confidence 666666666666666554445555555555555555555555555432 3444444432 34555555555555555
Q ss_pred CCcHHHHHHHHHHHH
Q 007998 224 GAWKEGDKIHEYIRE 238 (582)
Q Consensus 224 ~~~~~a~~~~~~~~~ 238 (582)
+. ..+...+..+.+
T Consensus 171 ~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 171 GG-ERVRAAMEKLAE 184 (211)
T ss_dssp CS-HHHHHHHHHHHH
T ss_pred Cc-hhHHHHHHHHHh
Confidence 54 333334444443
No 276
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.72 E-value=53 Score=25.97 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCC--hhHHHHHHHHHHHcCC
Q 007998 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRD---IASWNALIAGLAQGNL--ASEAVDLFKRMKMEGV 205 (582)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 205 (582)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+.+..++..+...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4567778888888888888888887652 2344445555555432 3567778888877776
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.83 E-value=1.4e+02 Score=29.32 Aligned_cols=32 Identities=3% Similarity=-0.079 Sum_probs=19.6
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998 410 SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD 443 (582)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 443 (582)
|-....+..++..+.- ..+++.+.+..|...|
T Consensus 344 ~Ys~I~l~~mA~~l~~--s~~~~E~~L~~lI~~g 375 (429)
T 4b4t_R 344 SYKTLSLKSMASAFGV--SVAFLDNDLGKFIPNK 375 (429)
T ss_dssp TCSEEEHHHHHHHHTS--CHHHHHHHHHHHHHHT
T ss_pred HhceeeHHHHHHHhCc--CHHHHHHHHHHHHHcC
Confidence 4455566666666632 3567777777777443
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.81 E-value=39 Score=30.38 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=50.7
Q ss_pred CCHHHHHHHHhcCCCCCh----hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhH--HHHHHHHHHhcCChHHHHH
Q 007998 56 NELAYAHALFRQINAPST----NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALT--CSFALKACARVLALFETLQ 129 (582)
Q Consensus 56 g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~ 129 (582)
|+++....+++.-...+. .-++.| ...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 16 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L-~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---- 86 (285)
T 1wdy_A 16 EDVDLVQQLLEGGANVNFQEEEGGWTPL-HNAVQMSRE----DIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK---- 86 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTTCCCHH-HHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH----
T ss_pred CCHHHHHHHHHcCCCcccccCCCCCcHH-HHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH----
Confidence 777777777776543322 123333 333445554 34444555555443211 112233334455554
Q ss_pred HHHHHHHcCCCCchH--HHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007998 130 IHSHVLRHGFLADAL--LGTTLLDVYAKVGEIVSAKKVFDEMG 170 (582)
Q Consensus 130 ~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (582)
+.+.+++.|..++.. ...+.+...+..|+.+-...+++.-.
T Consensus 87 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 334445555444321 11223444556677777766666543
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=51.86 E-value=2.2e+02 Score=29.45 Aligned_cols=227 Identities=9% Similarity=-0.107 Sum_probs=119.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHH----HHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 007998 189 LASEAVDLFKRMKMEGVFKPNEVTVLG----ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA 264 (582)
Q Consensus 189 ~~~~A~~~~~~m~~~g~~~pd~~t~~~----ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 264 (582)
+.+.|...|......+ ..+...... +.......+...++...+........ +.....-.+..-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ--QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc--CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHH
Confidence 7788888888886654 233332222 22233344435566666666544332 322333344445567999999
Q ss_pred HHHHhcccCCC-CHHH-HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcC
Q 007998 265 FEVFDNIKCRK-SLVT-WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG 342 (582)
Q Consensus 265 ~~~~~~~~~~~-~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 342 (582)
...|+.|...+ +..- .-=+..++...|+.++|..+|.++... . +|-.++. -.+.|..-. +....
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~~~~-------~~~~~ 370 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGEEYE-------LKIDK 370 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTCCCC-------CCCCC
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCCCCC-------CCCCC
Confidence 99999987211 2122 222455677889999999999988642 2 3333332 222332100 00000
Q ss_pred CccC-hh-----hHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc
Q 007998 343 VKPN-MK-----HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS---NNC 413 (582)
Q Consensus 343 ~~~~-~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~~ 413 (582)
+.+. .. .-..-+..+...|...+|...+.......+......+.......|..+.+.....+....+. .-|
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P 450 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC
Confidence 0110 00 01122455778899999988776652223444444555555677888877766544322210 013
Q ss_pred hhHHHHHHHHHhcCCchHHH
Q 007998 414 GDFVLLSNLYAAYERWDDVG 433 (582)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~a~ 433 (582)
..|..++.-+++.-.++...
T Consensus 451 ~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 451 LAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp CTTHHHHHHHHTTSSSCHHH
T ss_pred cchHHHHHHHHHHcCCCHHH
Confidence 34555666666555555543
No 280
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=51.75 E-value=64 Score=30.10 Aligned_cols=58 Identities=7% Similarity=0.051 Sum_probs=42.3
Q ss_pred HhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998 371 KSVSMGT--DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442 (582)
Q Consensus 371 ~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 442 (582)
-..++.| -..+.+.-+..+.+++|+..|..+.+++++++|... ..++|.++...-.+.
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 3335565 355677888889999999999999999999998432 235567776665543
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.31 E-value=56 Score=29.25 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=8.7
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 007998 150 LDVYAKVGEIVSAKKVFDE 168 (582)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~ 168 (582)
+...+..|+.+-+..+++.
T Consensus 43 L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 43 LHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3334444555444444443
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.89 E-value=50 Score=27.02 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCC--hhHHHHHHHHHHHcCC
Q 007998 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRD---IASWNALIAGLAQGNL--ASEAVDLFKRMKMEGV 205 (582)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 205 (582)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4567777888888888888888887652 2344444555554322 3456777777777776
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.14 E-value=1.4e+02 Score=25.70 Aligned_cols=67 Identities=16% Similarity=0.029 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC
Q 007998 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243 (582)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 243 (582)
.|-..+..+ ..+...++.++|..|...|+-.--+..|......+...|++.+|.+++..-++.+-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344444433 2344667788888888777634445566666677777777777777777777766555
No 284
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=46.49 E-value=7.3 Score=23.34 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=12.5
Q ss_pred CCccccc-cCCccCCCCC
Q 007998 565 RVRFHRF-KDGACSCKDY 581 (582)
Q Consensus 565 ~~~~h~f-~~g~csc~~~ 581 (582)
|-.-|+. .+|.|||+-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 4445665 6899999976
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=45.21 E-value=1e+02 Score=26.37 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=37.5
Q ss_pred CHHHHHHHHHhCCCCCCHH--H-----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998 362 RLQEACDIVKSVSMGTDMV--L-----WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY 423 (582)
Q Consensus 362 ~~~~A~~~~~~~~~~p~~~--~-----~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (582)
-++.|+.+++.+...-|.. . --..+..|.+.|.+++|.+++++..+..+.+...-.-|..+-
T Consensus 93 PLESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 93 PLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3677888888884433311 1 123346789999999999999998887766655444444443
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.30 E-value=1.1e+02 Score=23.96 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcccCCCC---HHHHHHHHHHHHhCCC--hhHHHHHHHHHHhcCCCCCH
Q 007998 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKS---LVTWNTMVMAFAVHGD--GPRALELFEQMGRAGVKPDD 312 (582)
Q Consensus 248 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 312 (582)
.+.++.=|...|+.++|.+.++++. .|. ......+..++-+.++ .+....++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~-~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT-CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567788888899999999999887 552 2334444445554432 35567777777766654433
No 287
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=41.80 E-value=45 Score=24.83 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHH
Q 007998 25 LQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNA 92 (582)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 92 (582)
|...++..|+-.+ ... .-|..... ...+.|+++++.++.+...+|..++.++...|+..-|
T Consensus 26 vld~L~~~~vlt~--~~~-----e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 26 LWDVLLSRELFRP--HMI-----EDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp THHHHHHTTSSCH--HHH-----HHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHcCCCCH--HHH-----HHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 5566666665543 222 22333323 5788899999999988888999999998776765544
No 288
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=41.30 E-value=9.3 Score=26.13 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=17.7
Q ss_pred ceEEEecCCccccccCCccCCC
Q 007998 558 REIIVRDRVRFHRFKDGACSCK 579 (582)
Q Consensus 558 ~~~~~~~~~~~h~f~~g~csc~ 579 (582)
..|=+.|.+..|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4566889999999999986543
No 289
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=40.26 E-value=1.5e+02 Score=28.77 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=9.1
Q ss_pred CCHHHHHHHHhcCC
Q 007998 56 NELAYAHALFRQIN 69 (582)
Q Consensus 56 g~~~~A~~~f~~~~ 69 (582)
|+++-+..+++.-.
T Consensus 25 g~~~~v~~Ll~~g~ 38 (437)
T 1n11_A 25 GHLPIVKNLLQRGA 38 (437)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCC
Confidence 67777776666543
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.68 E-value=81 Score=27.66 Aligned_cols=79 Identities=9% Similarity=0.013 Sum_probs=52.3
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998 364 QEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG--SNNCGDFVLLSNLYAAYERWDDVGRVRKAMK 440 (582)
Q Consensus 364 ~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 440 (582)
+++...|... ..+-|......-+.. ... .+....+|..|...+ ..-+..|...+..+...|++.+|..+|+.=.
T Consensus 101 Erc~~~F~~~~rYknD~RyLklWl~Y-a~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 101 ERCTREFVRNPLYKDDVRYLRIWMQY-VNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHH-HTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHH-HHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444 334465433333322 121 246778888888765 5567789999999999999999999999777
Q ss_pred hCCCc
Q 007998 441 NRDVK 445 (582)
Q Consensus 441 ~~~~~ 445 (582)
+++-.
T Consensus 178 ~~~A~ 182 (223)
T 4aez_C 178 RMKAK 182 (223)
T ss_dssp HHTCB
T ss_pred HcCCc
Confidence 66554
No 291
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=38.38 E-value=2.2e+02 Score=25.44 Aligned_cols=48 Identities=13% Similarity=-0.053 Sum_probs=19.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhC
Q 007998 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH 290 (582)
Q Consensus 242 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (582)
.++..+-...+.+..+.|+.+..-.+...+. .++...-...+.++...
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLK-DPNGDVRNWAAFAININ 186 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHT-CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhh
Confidence 3455555555555555554332222333333 44444433344444433
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.55 E-value=1.1e+02 Score=25.05 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcccCCCC---HHHHHHHHHHHHhCCC--hhHHHHHHHHHHhcCCCCC
Q 007998 248 CNAVIDMYAKCGLLDKAFEVFDNIKCRKS---LVTWNTMVMAFAVHGD--GPRALELFEQMGRAGVKPD 311 (582)
Q Consensus 248 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 311 (582)
.+.++.=|...|+.++|.+.++++. .|. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~-~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT-CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567888888899999999999887 553 2334444455554322 3456677777776665443
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.98 E-value=1.5e+02 Score=25.47 Aligned_cols=12 Identities=8% Similarity=-0.139 Sum_probs=4.8
Q ss_pred CChHHHHHHHHH
Q 007998 122 LALFETLQIHSH 133 (582)
Q Consensus 122 ~~~~~a~~~~~~ 133 (582)
|+.+..+.+++.
T Consensus 20 g~~~~v~~Ll~~ 31 (241)
T 1k1a_A 20 GNLPAVHRLVNL 31 (241)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444444443333
No 294
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=35.79 E-value=1.9e+02 Score=24.11 Aligned_cols=164 Identities=14% Similarity=0.064 Sum_probs=83.9
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998 60 YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF 139 (582)
Q Consensus 60 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 139 (582)
.--.+++.+..+|...-...+..+.+.+.. .+...+.++.. .+|...-...+.++...++.+....+. .++.
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~--- 86 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK--- 86 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---
Confidence 334445555566666666666666666553 33444444443 345555555566666666543222222 2222
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 007998 140 LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219 (582)
Q Consensus 140 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a 219 (582)
.++..+....+.++.+.++.+....+.+.+..+|...-...+.++.+.+.. ++...+..+.. .++...-...+.+
T Consensus 87 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----d~~~~vr~~A~~a 161 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK----DEDGWVRQSAADA 161 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT----CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc----CCCHHHHHHHHHH
Confidence 356666666677777777655555555555555655555555555555543 33444444432 3455555555555
Q ss_pred HhccCCcHHHHHHHHHHH
Q 007998 220 CGHLGAWKEGDKIHEYIR 237 (582)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~ 237 (582)
+.+.|. ..+...+..+.
T Consensus 162 L~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 162 LGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp HHHHCS-HHHHHHHHHHH
T ss_pred HHHhCc-hhHHHHHHHHH
Confidence 555554 23344444444
No 295
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.45 E-value=3.7e+02 Score=28.07 Aligned_cols=20 Identities=0% Similarity=-0.114 Sum_probs=14.4
Q ss_pred HhcCCHHHHHHHHhcccCCC
Q 007998 256 AKCGLLDKAFEVFDNIKCRK 275 (582)
Q Consensus 256 ~~~g~~~~A~~~~~~~~~~~ 275 (582)
...|+++.|.+.++++..-|
T Consensus 549 ~~~g~~~~AL~~i~~L~llP 568 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLP 568 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSC
T ss_pred HHcCCHHHHHHHHHhCCCCC
Confidence 56788888888888775333
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.38 E-value=76 Score=27.42 Aligned_cols=206 Identities=9% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCchhHHH--HHHHHHHhcCCHHHHHHHHhccc---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998 230 DKIHEYIREERLDMNVVVCN--AVIDMYAKCGLLDKAFEVFDNIK---CRKSLVTWNTMVMAFAVHGDGPRALELFEQMG 304 (582)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~--~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 304 (582)
.++++.+++.|..++..... +.+...++.|+.+-+..+++.-. ...+...++.+..+..... .++++.+.
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~-----~~~v~~Ll 96 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH-----LSMVVQLM 96 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC-----HHHHHHHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC-----HHHHHHHH
Q ss_pred hcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHH--hhhhHHhhcCCHHHHHHHHHhCCCCCCHH
Q 007998 305 RAGVKPDDVSYL--AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG--SVVDLLGRAGRLQEACDIVKSVSMGTDMV 380 (582)
Q Consensus 305 ~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~p~~~ 380 (582)
+.|..|+..... ..+...+..|+.+ +++.+.+.|..++..... ..+...+..+...+..+++.+.+..++..
T Consensus 97 ~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~ 172 (240)
T 3eu9_A 97 KYGADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172 (240)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCC
T ss_pred HcCCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchh
Q ss_pred HH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998 381 LW---QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445 (582)
Q Consensus 381 ~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 445 (582)
.- .+.+......|+.+.+..+++.-...+..+......+-.+ .+.|+.+-+..+++...+.+..
T Consensus 173 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA-KQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHH-HHTTCHHHHHHHHHHC------
T ss_pred hccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHcCcHHHHHHHHHhhhccCcC
No 297
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=33.31 E-value=3.2e+02 Score=25.92 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccc
Q 007998 249 NAVIDMYAKCGLLDKAFEVFDNIK 272 (582)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~~~~~~ 272 (582)
+.++.=|...|+.++|.+.++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 445555555556666666655555
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.27 E-value=2.9e+02 Score=25.49 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccc
Q 007998 249 NAVIDMYAKCGLLDKAFEVFDNIK 272 (582)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~~~~~~ 272 (582)
+.++.=|...|+.++|.+.++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 345555666666666666666665
No 299
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.05 E-value=1.5e+02 Score=26.87 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=8.3
Q ss_pred CCHHHHHHHHhcC
Q 007998 56 NELAYAHALFRQI 68 (582)
Q Consensus 56 g~~~~A~~~f~~~ 68 (582)
|+.+-+..+++.-
T Consensus 42 g~~~~v~~Ll~~g 54 (285)
T 3kea_A 42 NNVRLVCTLLNAG 54 (285)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CCHHHHHHHHhCC
Confidence 6776666666653
No 300
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.02 E-value=2.6e+02 Score=24.84 Aligned_cols=48 Identities=8% Similarity=-0.032 Sum_probs=20.0
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 007998 71 PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122 (582)
Q Consensus 71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 122 (582)
+|...-...+.++.+.|. ..++..+..+... ++...-...+.+++..+
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCSD---KNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHcC---CCHHHHHHHHHHHHHhc
Confidence 343333333344444442 3344444444432 34444444444555444
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.40 E-value=1.6e+02 Score=26.02 Aligned_cols=24 Identities=8% Similarity=-0.186 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHh
Q 007998 78 AVLRGLAHSSKPTNAVLWYRQMLR 101 (582)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~ 101 (582)
--++.+....++++|++++++...
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 446677778888888888887653
No 302
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=31.80 E-value=27 Score=25.43 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=25.2
Q ss_pred CcchHHHHHHHHHHHHHHHHcCcccCCccc
Q 007998 469 HVKWREIYEKLDEIMFKIKEYGYAAGTSCV 498 (582)
Q Consensus 469 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 498 (582)
.++..+++..+++...+++..|+.||...+
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 356788899999999999999999997543
No 303
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=31.57 E-value=3.6e+02 Score=25.97 Aligned_cols=277 Identities=8% Similarity=-0.023 Sum_probs=146.1
Q ss_pred HHHHhcCCC-CCHHHHHHHHhcCCC--------CChhHHHHHHHHHHcCCC-chHHHHHHHHHHhCCCCCChhHHH----
Q 007998 47 IEFYALSPL-NELAYAHALFRQINA--------PSTNDFNAVLRGLAHSSK-PTNAVLWYRQMLRGSHRSDALTCS---- 112 (582)
Q Consensus 47 ~~li~~y~~-g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~---- 112 (582)
..|...|.+ |+.++...++....+ +....-..||..+....+ .+.-.++..+..+..- -+..+|.
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 477788888 888888888876642 123345677777766433 3333344444332210 1223341
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHHcCCCCc-----hHHHHHHHHHHHhcCCHHHHHHHHhhcC--------CCChhH-
Q 007998 113 --FALKACARVLALFETLQIHSHVLRHGFLAD-----ALLGTTLLDVYAKVGEIVSAKKVFDEMG--------VRDIAS- 176 (582)
Q Consensus 113 --~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~y~~~g~~~~A~~~f~~m~--------~~~~~~- 176 (582)
.+...+...|++.+|.+++..+.+.--..| ..++-.-+.+|...+++.++...+.... .|.+..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 467778888999999888888776321211 2456667788888899888887775542 121111
Q ss_pred -HHHHHHHHH-hCCChhHHHHHHHHHHHcCC--CCCC---HHHHHHHHHHHhccCCcHHHHHHHH-HHHHcCCCCchhHH
Q 007998 177 -WNALIAGLA-QGNLASEAVDLFKRMKMEGV--FKPN---EVTVLGALAACGHLGAWKEGDKIHE-YIREERLDMNVVVC 248 (582)
Q Consensus 177 -~~~li~~~~-~~g~~~~A~~~~~~m~~~g~--~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~ 248 (582)
.-.-...+. ..++|.+|...|-+....-- -.|. ...|..+..... ++..+...+.. .....-..|+...+
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~~~pei~~l 259 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITYSGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTTCSHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhccccccccCCccHHHH
Confidence 111123345 78899999888876643210 0121 123333322222 22222222222 11111134566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC----CCC-CHHHHHHHHHH
Q 007998 249 NAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG----VKP-DDVSYLAALCA 321 (582)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~t~~~ll~a 321 (582)
..++.+|. .+++.+-..+++... ...|...... ...+++.+...+ +.| ...++..+...
T Consensus 260 ~~L~~a~~-~~dl~~f~~iL~~~~~~l~~D~~l~~h-------------~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 260 KSVAEASH-KRSLADFQAALKEYKKELAEDVIVQAH-------------LGTLYDTMLEQNLCRIIEPYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHSTTTTTTSHHHHHH-------------HHHHHHHHHHHHHHHHHTTCSEEEHHHHHHH
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHHHhcChHHHHH-------------HHHHHHHHHHHHHHHHhHhhceeeHHHHHHH
Confidence 66777654 556766666665443 1334432111 112222222211 122 33455555554
Q ss_pred HHcCCCHHHHHHHHHHHhHcC
Q 007998 322 CNHAGLVDDGVRLFNSMANCG 342 (582)
Q Consensus 322 ~~~~g~~~~a~~~~~~~~~~~ 342 (582)
+. . ..++++..+.+|+..|
T Consensus 326 l~-l-s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 326 IQ-L-PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HT-C-CHHHHHHHHHHHHHTT
T ss_pred HC-c-CHHHHHHHHHHHHHCC
Confidence 43 2 6889999999999854
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.35 E-value=1.7e+02 Score=23.40 Aligned_cols=36 Identities=14% Similarity=-0.065 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 007998 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG 157 (582)
Q Consensus 122 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 157 (582)
+..-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333345555555544443333333222334444444
No 305
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=30.42 E-value=3.8e+02 Score=25.84 Aligned_cols=214 Identities=14% Similarity=0.066 Sum_probs=105.9
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHcCCCC-----chhHHHHHHHHHHhcCCHHHHHHHHhccc-----CCCCHHHHH---
Q 007998 215 GALAACGHLGAWKEGDKIHEYIREERLDM-----NVVVCNAVIDMYAKCGLLDKAFEVFDNIK-----CRKSLVTWN--- 281 (582)
Q Consensus 215 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~--- 281 (582)
-++..|...|++.+|.+++..+.+.--.. -..++..-+.+|...+++.++...+.... ..+++..-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 34555666666666666666555421111 13445556667777777777777665442 112222211
Q ss_pred -HHHHHHH-hCCChhHHHHHHHHHHhc--CC-CCC---HHHHHHHHHHHHcCCCHHHHHHHHH-HH-hHcCCccChhhHH
Q 007998 282 -TMVMAFA-VHGDGPRALELFEQMGRA--GV-KPD---DVSYLAALCACNHAGLVDDGVRLFN-SM-ANCGVKPNMKHYG 351 (582)
Q Consensus 282 -~li~~~~-~~g~~~~A~~~~~~m~~~--g~-~p~---~~t~~~ll~a~~~~g~~~~a~~~~~-~~-~~~~~~~~~~~~~ 351 (582)
.-...+. ..+++..|...|-+..+. .. .|. ...|.. +.+.......+ -..++. .. ..+ ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~aLl~~~r~e-l~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCKIMLGQSDD-VNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHTTCGGG-HHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHHHHcCCHHH-HHHHhcccccccc-CCccHHHHH
Confidence 1122345 677888887777665421 00 121 123322 22222222212 112221 11 112 246666666
Q ss_pred hhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 007998 352 SVVDLLGRAGRLQEACDIVKSV--SMGTDMVLW---QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY 426 (582)
Q Consensus 352 ~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 426 (582)
.++.+| +.+++.+..++++.. .+..|.... ..|.... -...+.++ ..|-....+..++..+.-
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I--------r~~~L~~i--~~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM--------LEQNLCRI--IEPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH--------HHHHHHHH--HTTCSEEEHHHHHHHHTC-
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--------HHHHHHHH--hHhhceeeHHHHHHHHCc-
Confidence 666665 456777777777765 233455431 1111111 11112222 246555666677766643
Q ss_pred CCchHHHHHHHHHHhCCC
Q 007998 427 ERWDDVGRVRKAMKNRDV 444 (582)
Q Consensus 427 g~~~~a~~~~~~m~~~~~ 444 (582)
..++++...-+|...|.
T Consensus 329 -s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 -PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -CHHHHHHHHHHHHHTTS
T ss_pred -CHHHHHHHHHHHHHCCC
Confidence 57889999999986654
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.34 E-value=91 Score=26.08 Aligned_cols=55 Identities=4% Similarity=0.100 Sum_probs=26.2
Q ss_pred HHHhcCCCCCHHHHHHHHhcCC----CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC
Q 007998 48 EFYALSPLNELAYAHALFRQIN----APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSD 107 (582)
Q Consensus 48 ~li~~y~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 107 (582)
.|..+...|+.+....+++.-. .+|..-++.|..+. +.|+ .++++.+.+.|..++
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~----~~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNND----IEIAKALIDRGADIN 66 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH-HHTC----HHHHHHHHHTTCCTT
T ss_pred HHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH-HcCC----HHHHHHHHHcCCCCC
Confidence 3444433377777777776543 22333344444333 3344 334444445555443
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.62 E-value=1.6e+02 Score=23.68 Aligned_cols=59 Identities=7% Similarity=-0.023 Sum_probs=25.3
Q ss_pred HHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 007998 99 MLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158 (582)
Q Consensus 99 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 158 (582)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344455433322 22333444444444555666666555444343333333455555543
No 308
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.83 E-value=1.8e+02 Score=22.91 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=18.9
Q ss_pred HHHHHHHcCC-CchHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 007998 78 AVLRGLAHSS-KPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120 (582)
Q Consensus 78 ~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 120 (582)
.++..+...+ .+-.|.++++.+.+.++..+..|....|+.+..
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 3444444433 444455555555544444444444444444433
No 309
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.79 E-value=1e+02 Score=31.07 Aligned_cols=61 Identities=10% Similarity=0.016 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccCh--hhH-HhhhhHHhhcCCHHHHHHHHHhC
Q 007998 313 VSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNM--KHY-GSVVDLLGRAGRLQEACDIVKSV 373 (582)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~--~~~-~~li~~~~~~g~~~~A~~~~~~~ 373 (582)
..++.+++-|.+.+.++.|..+..+..- ..-.++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5678888888888999999888887753 1111111 112 13445666788888888877654
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.96 E-value=2.4e+02 Score=22.88 Aligned_cols=53 Identities=8% Similarity=0.046 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC
Q 007998 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243 (582)
Q Consensus 191 ~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 243 (582)
+++.++|..|...|+-.--+..|......+...|++.+|.+++..-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34778888888777644455667777777777788888888888777776666
No 311
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.96 E-value=6.2e+02 Score=27.57 Aligned_cols=86 Identities=17% Similarity=0.005 Sum_probs=39.9
Q ss_pred HHHHHHHhcCC---HHHHHHHHhccc-------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007998 250 AVIDMYAKCGL---LDKAFEVFDNIK-------CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319 (582)
Q Consensus 250 ~li~~y~~~g~---~~~A~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 319 (582)
.++...++.|. .+.|.+.|+... ..||.. ......-.+.|..++-..++++.... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 34455555554 345666665432 123322 11222223445544444455554442 1222334455
Q ss_pred HHHHcCCCHHHHHHHHHHHhH
Q 007998 320 CACNHAGLVDDGVRLFNSMAN 340 (582)
Q Consensus 320 ~a~~~~g~~~~a~~~~~~~~~ 340 (582)
.+++...+.+...++++....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTC
T ss_pred HHhCCCCCHHHHHHHHHHHhC
Confidence 566666666666666655544
No 312
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.44 E-value=2.1e+02 Score=26.93 Aligned_cols=26 Identities=12% Similarity=0.365 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC
Q 007998 147 TTLLDVYAKVGEIVSAKKVFDEMGVR 172 (582)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~~ 172 (582)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34555555556666666666665544
No 313
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=26.72 E-value=96 Score=21.87 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=27.9
Q ss_pred HHHHhcCC--CCChhHHHHHHHHHHcCCCchHHHHHHHHH
Q 007998 62 HALFRQIN--APSTNDFNAVLRGLAHSSKPTNAVLWYRQM 99 (582)
Q Consensus 62 ~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 99 (582)
..+++++| +|++.+|+-+...+-+..-..+++.+.+++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45788887 689999988887766666666777776655
No 314
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=26.26 E-value=3.9e+02 Score=24.73 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=77.2
Q ss_pred CchHHHHHHHHHHhC-C----CCCChhHHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 007998 88 KPTNAVLWYRQMLRG-S----HRSDALTCSF---ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159 (582)
Q Consensus 88 ~~~~A~~~~~~m~~~-g----~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 159 (582)
+-++|..+|..+... + ..|+...... .+..+.+.-+ -+++..+.+.|+.|..++..-++..+++.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456889999887653 2 2344322222 1222222222 25778888899999989999999999998889
Q ss_pred HHHHHHHhhcC--CCChhHHHH--HHH----HHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC
Q 007998 160 VSAKKVFDEMG--VRDIASWNA--LIA----GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA 225 (582)
Q Consensus 160 ~~A~~~f~~m~--~~~~~~~~~--li~----~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~ 225 (582)
+.+.+++|.+- ......+-+ ++. ...+..++++.+.++..... ..+......++.-......
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p----~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP----NLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT----CCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC----CCCHHHHHHHHHHHHhCCc
Confidence 99999998774 223332222 221 12334577777777766421 2344555555554444443
No 315
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.16 E-value=2.4e+02 Score=24.67 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc
Q 007998 294 PRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKP 345 (582)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 345 (582)
+++..+|..|...|+--.. ..|......+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4666777777776654443 345555556666777777777777776655455
No 316
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.81 E-value=2.4e+02 Score=28.33 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCH-H------HHH-HHHHHHHhCCChhHHHHHHHHHHhc
Q 007998 245 VVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL-V------TWN-TMVMAFAVHGDGPRALELFEQMGRA 306 (582)
Q Consensus 245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~------~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 306 (582)
..++|.+++.|...+.++.|..+..+.. -|.. . .|. -+...++-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5678888999999999999999998876 3321 1 222 2345567788999998888887764
No 317
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.70 E-value=1.4e+02 Score=24.48 Aligned_cols=57 Identities=7% Similarity=0.004 Sum_probs=27.8
Q ss_pred hCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCC
Q 007998 101 RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH--GFLADALLGTTLLDVYAKVGE 158 (582)
Q Consensus 101 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~ 158 (582)
+.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|----++.+.+.|-
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 345554432 233444555545555566666666555 444343332233455555553
No 318
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.43 E-value=92 Score=23.06 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=29.7
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHH
Q 007998 157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAV 194 (582)
Q Consensus 157 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 194 (582)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767665553
No 319
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=24.89 E-value=19 Score=21.81 Aligned_cols=12 Identities=25% Similarity=0.902 Sum_probs=9.7
Q ss_pred ccccCCCchhhH
Q 007998 538 NLRICRDCHDVI 549 (582)
Q Consensus 538 ~l~~~~~~h~~~ 549 (582)
+.|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 789999998643
No 320
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.80 E-value=1.7e+02 Score=27.51 Aligned_cols=14 Identities=7% Similarity=-0.111 Sum_probs=7.0
Q ss_pred HhcCCHHHHHHHHh
Q 007998 256 AKCGLLDKAFEVFD 269 (582)
Q Consensus 256 ~~~g~~~~A~~~~~ 269 (582)
+..|+.+-+..+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455555555554
No 321
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.26 E-value=1.9e+02 Score=25.98 Aligned_cols=179 Identities=9% Similarity=0.005 Sum_probs=82.7
Q ss_pred HHhcCCHHHHHHHHhcccCCCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHcCCCHHH
Q 007998 255 YAKCGLLDKAFEVFDNIKCRKSLV-TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD---VSYLAALCACNHAGLVDD 330 (582)
Q Consensus 255 y~~~g~~~~A~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~ 330 (582)
.+..|+.+-+..+++.-. .++.. -++. +...+..|+.+-+ +.+.+.|..|+. .-.+.+.. .+..|+.+-
T Consensus 38 A~~~g~~~~v~~Ll~~g~-~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~~~ 110 (285)
T 3kea_A 38 AIADNNVRLVCTLLNAGA-LKNLLENEFP-LHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYY-AVDSGNMQT 110 (285)
T ss_dssp HHHTTCHHHHHHHHHTTG-GGSCCTTCCH-HHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHH
T ss_pred HHHcCCHHHHHHHHhCCC-CCCCCCCCCH-HHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHH-HHHcCCHHH
Confidence 344566666666555322 11111 1222 2223445555433 333444554442 12223333 344566654
Q ss_pred HHHHHHHHhHcCCccChh---hHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998 331 GVRLFNSMANCGVKPNMK---HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE 407 (582)
Q Consensus 331 a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 407 (582)
+..+++ .|..++.. -+...+..-+..|+.+-+.-+++.-....+...-.+.+......|+.+.+..+++.-..
T Consensus 111 v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad 186 (285)
T 3kea_A 111 VKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS 186 (285)
T ss_dssp HHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCC
Confidence 444433 34444322 22334455566777776666666543222321223444455677888888888877666
Q ss_pred cCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 007998 408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP 448 (582)
Q Consensus 408 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 448 (582)
.+..+.......+..-...|+. ++.+.+.+.|..+..
T Consensus 187 ~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 187 TNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp TCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred CCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 5533322111111111234443 455556667765443
No 322
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.20 E-value=2e+02 Score=26.68 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCC--hhHHHHHHHHHHHcCC
Q 007998 146 GTTLLDVYAKVGEIVSAKKVFDEMGVRD---IASWNALIAGLAQGNL--ASEAVDLFKRMKMEGV 205 (582)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 205 (582)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+...+++..+...|+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 4567788888888888888888887662 2334444444444333 3456677788877776
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.98 E-value=2.1e+02 Score=22.79 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=17.3
Q ss_pred CCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 007998 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL 260 (582)
Q Consensus 224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 260 (582)
+..-.|.++++.+.+.+...+..+...-++.+...|-
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3344455555555544444444444444444554443
No 324
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.95 E-value=2.9e+02 Score=22.72 Aligned_cols=60 Identities=8% Similarity=-0.099 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCC--ChhHHHHHHH-HH-----HhcCChHHHHHHHHHHHH
Q 007998 76 FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS--DALTCSFALK-AC-----ARVLALFETLQIHSHVLR 136 (582)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~~~~ 136 (582)
|..-+..|- .|++-+|.++|+..-.....| +...|..||+ .. .+.|+...|..++.....
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333444443 489999999999998765555 5567777777 32 246888888888888765
No 325
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.35 E-value=65 Score=21.42 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 007998 89 PTNAVLWYRQMLRGSHRSDALTCSFALKAC 118 (582)
Q Consensus 89 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 118 (582)
.++|.+.|.+|++..-.+...||..+++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 468888998888654444557888888877
No 326
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.24 E-value=3.2e+02 Score=22.55 Aligned_cols=54 Identities=9% Similarity=0.121 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc
Q 007998 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN 244 (582)
Q Consensus 191 ~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 244 (582)
+.+.++|..|...|+-.--+..|......+-..|++.+|.+++..-++.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 336678888888877444556677777777777888888888887777776664
No 327
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=23.05 E-value=2.8e+02 Score=24.39 Aligned_cols=23 Identities=9% Similarity=-0.136 Sum_probs=14.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHh
Q 007998 283 MVMAFAVHGDGPRALELFEQMGR 305 (582)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~ 305 (582)
-+..+....++++|..++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566667777777777766543
No 328
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.03 E-value=4.1e+02 Score=24.81 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCCchHHHHHHHHH
Q 007998 77 NAVLRGLAHSSKPTNAVLWYRQM 99 (582)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~m 99 (582)
+.++.-|...|+.++|...++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 45555555556666666665555
No 329
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=22.88 E-value=4.6e+02 Score=24.37 Aligned_cols=84 Identities=10% Similarity=-0.027 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC---CCHHHHHHHHhcCCCCChh---------HHHHHHHHHHcCC
Q 007998 20 IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL---NELAYAHALFRQINAPSTN---------DFNAVLRGLAHSS 87 (582)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~---g~~~~A~~~f~~~~~~~~~---------~~~~li~~~~~~g 87 (582)
..|.+++..+. |+..| . ..||+..+. .+.....+.|..+-..|.. .|..++-++...-
T Consensus 25 ~DA~~L~kA~k--G~Gtd-----E---~~lieIL~~Rs~~q~~~I~~aY~~~yg~~L~~dlkse~sG~f~~ll~~l~~~~ 94 (327)
T 1w3w_A 25 PDAETLYKAMK--GIGTN-----E---QAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYPP 94 (327)
T ss_dssp HHHHHHHHHHS--SSSCC-----H---HHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHhc--CCCCC-----H---HHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCCcHHHHHHHhcCCH
Confidence 46777777774 44444 1 356665555 4455555556555433322 2445555555544
Q ss_pred CchHHHHHHHHHHhCCCCCChhHHHHHH
Q 007998 88 KPTNAVLWYRQMLRGSHRSDALTCSFAL 115 (582)
Q Consensus 88 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll 115 (582)
--.+|..+.+.|.. ...|..++..++
T Consensus 95 ~~~DA~~L~~A~~g--~Gtde~~lieIL 120 (327)
T 1w3w_A 95 YRYEAKELHDAMKG--LGTKEGVIIEIL 120 (327)
T ss_dssp THHHHHHHHHHHHS--SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--cCCCHHHHHHHH
Confidence 34566666666653 334554444443
No 330
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.68 E-value=1.8e+02 Score=24.05 Aligned_cols=151 Identities=11% Similarity=-0.009 Sum_probs=67.4
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHH--HHHHHHHHHhcCCHHH
Q 007998 84 AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL--GTTLLDVYAKVGEIVS 161 (582)
Q Consensus 84 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~ 161 (582)
+..|+.+....++..-...--.+|..-.+. +...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-
T Consensus 13 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 87 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87 (201)
T ss_dssp HHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 445666655555432210000122222333 33344556655 4444555665544321 1233445567788888
Q ss_pred HHHHHhhcC----CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC-C--CCCCHHHHHHHHHHHhccCCcHHHHHHHH
Q 007998 162 AKKVFDEMG----VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG-V--FKPNEVTVLGALAACGHLGAWKEGDKIHE 234 (582)
Q Consensus 162 A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~--~~pd~~t~~~ll~a~~~~~~~~~a~~~~~ 234 (582)
+..+++.-. .+|..-++.+ ...++.|+.+-+.. +.+.| . -..|..-.+.+..++........-.++.+
T Consensus 88 ~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 88 LAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKL----LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHH----HHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred HHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHH----HHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 888875432 1222222222 23345566544333 33333 1 01222223333333332222333356666
Q ss_pred HHHHcCCCCc
Q 007998 235 YIREERLDMN 244 (582)
Q Consensus 235 ~~~~~~~~~~ 244 (582)
.+++.|..++
T Consensus 163 ~Ll~~ga~~~ 172 (201)
T 3hra_A 163 LLMENGADQS 172 (201)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHCCCCCC
Confidence 6677776554
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.37 E-value=6e+02 Score=27.83 Aligned_cols=127 Identities=10% Similarity=-0.032 Sum_probs=69.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHH
Q 007998 149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228 (582)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~ 228 (582)
++.-+...|..+-|.++..-.+. +...--.+..+|...|++++|.+.|.+.- .|+ ..+..... ..+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl-~~~~~~~~----------~~~~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVL-YSHTSQFA----------VLRE 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTT-CSSCCSCG----------GGHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhc-ccCccccc----------chhh
Confidence 55666677888877776655544 54444567788899999999999998763 333 21110000 0000
Q ss_pred HHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhccc---CCCCH----HHHHHHHHHHHhCC
Q 007998 229 GDKIHEYIREERL-DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK---CRKSL----VTWNTMVMAFAVHG 291 (582)
Q Consensus 229 a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~----~~~~~li~~~~~~g 291 (582)
...++. .... .....-|..++..+-+.+.++.+.++-+... ...|. ..|+.+..+.+..|
T Consensus 883 ~~~ll~---~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAE---KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHH---HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccC---cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111111 1110 1123366778888888888877766554221 12232 35666776665443
No 332
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.12 E-value=3e+02 Score=22.02 Aligned_cols=13 Identities=8% Similarity=-0.049 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhH
Q 007998 328 VDDGVRLFNSMAN 340 (582)
Q Consensus 328 ~~~a~~~~~~~~~ 340 (582)
.-.|.++++.+.+
T Consensus 42 ~~sa~ei~~~l~~ 54 (150)
T 2xig_A 42 HLSPEEITHSIRQ 54 (150)
T ss_dssp CBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3344444444444
No 333
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.06 E-value=8e+02 Score=26.83 Aligned_cols=128 Identities=9% Similarity=0.068 Sum_probs=67.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCCh
Q 007998 114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLA 190 (582)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~ 190 (582)
++..|...+..+.+.++... .+.++..--.+..+|..+|+.++|...|++.... +....+ ..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~----------~~ 880 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA----------VL 880 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCG----------GG
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccccc----------ch
Confidence 55666677777766553322 3445544445778899999999999999987521 000000 00
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcC
Q 007998 191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN----VVVCNAVIDMYAKCG 259 (582)
Q Consensus 191 ~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g 259 (582)
.....++.... .. .....-|..++..+-+.+.++.+.++-+..++.--..| ...++.+..+++..|
T Consensus 881 ~~~~~ll~~~e-~~--~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 881 REFQEIAEKYH-HQ--NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHTT-TC--SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhccCccc-cc--chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01111111110 00 11223456666666677777777766666665322222 235555555555443
No 334
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.58 E-value=1.6e+02 Score=23.07 Aligned_cols=46 Identities=15% Similarity=-0.031 Sum_probs=30.1
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 007998 78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123 (582)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 123 (582)
.++..+...+.+-.|.++++.+.+.++..+..|.-..|+.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4555565566667777777777777666666666666666665554
No 335
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.40 E-value=1.4e+02 Score=23.67 Aligned_cols=47 Identities=15% Similarity=-0.021 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 007998 77 NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA 123 (582)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 123 (582)
..++..+...+.+-.|.++++.+.+.++..+..|.-..|..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34556666666666777777777776666666666666666655553
No 336
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=20.85 E-value=2.7e+02 Score=25.89 Aligned_cols=84 Identities=10% Similarity=-0.026 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC---CCHHHHHHHHhcCCCCChh---------HHHHHHHHHHcCC
Q 007998 20 IHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL---NELAYAHALFRQINAPSTN---------DFNAVLRGLAHSS 87 (582)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~---g~~~~A~~~f~~~~~~~~~---------~~~~li~~~~~~g 87 (582)
..|.+++..+. |+..| - .+||+..+. .+.....+.|..+-..|.. .|..++-+++..-
T Consensus 16 ~DA~~L~~A~k--G~Gtd--e------~~lieIL~~rs~~q~~~I~~~Y~~~yg~~L~~dl~se~sG~f~~ll~~l~~~~ 85 (315)
T 1dm5_A 16 EDAETLRKAMK--GIGTD--E------KSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRKP 85 (315)
T ss_dssp HHHHHHHHHHS--SSSCC--H------HHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhc--CCCCC--H------HHHHHHHhcCCHHHHHHHHHHHHHHHCCCHHHHHHhhcCccHHHHHHHHccCh
Confidence 45777777773 44444 1 244454444 4455555556555433322 3555665665544
Q ss_pred CchHHHHHHHHHHhCCCCCChhHHHHHH
Q 007998 88 KPTNAVLWYRQMLRGSHRSDALTCSFAL 115 (582)
Q Consensus 88 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll 115 (582)
...+|..+.+.|...| .|..++..++
T Consensus 86 ~~~dA~~L~~A~kg~G--tde~~lieIL 111 (315)
T 1dm5_A 86 DEFLAEQLHAAMKGLG--TDKNALIDIL 111 (315)
T ss_dssp HHHHHHHHHHHHHSSS--CCHHHHHHHH
T ss_pred hHHHHHHHHHHhhcCC--CchhhhhhhH
Confidence 4456666666664433 3544444333
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.60 E-value=6.2e+02 Score=24.99 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc
Q 007998 224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272 (582)
Q Consensus 224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 272 (582)
.+.+.|.++ +.+.|++--...|..-.+.+...|++++|-++--..+
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 444444433 2334444444445555556666666666666655443
No 338
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.58 E-value=4e+02 Score=22.76 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCC-Chh-------HHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 007998 159 IVSAKKVFDEMGVR-DIA-------SWNALIAGLAQGNLASEAVDLFKRMKME 203 (582)
Q Consensus 159 ~~~A~~~f~~m~~~-~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 203 (582)
++.|..+++.+... |.. .--..+..|.++|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 67889999988643 211 1223346788999999999999996544
No 339
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.45 E-value=1.9e+02 Score=23.28 Aligned_cols=35 Identities=9% Similarity=0.082 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 007998 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE 158 (582)
Q Consensus 124 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 158 (582)
.-.|.++++.+.+.+...+..|.---++.+...|-
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 33455555555554433333333333444444443
No 340
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.24 E-value=1.9e+02 Score=23.14 Aligned_cols=30 Identities=7% Similarity=-0.095 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 007998 89 PTNAVLWYRQMLRGSHRSDALTCSFALKAC 118 (582)
Q Consensus 89 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 118 (582)
.-.|.++++.+.+.++..+..|.-..|..+
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L 62 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELL 62 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHH
Confidence 334444444444444333443333333333
No 341
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.16 E-value=1.5e+02 Score=22.97 Aligned_cols=44 Identities=14% Similarity=-0.065 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007998 94 LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH 137 (582)
Q Consensus 94 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 137 (582)
-+|+.+....+.|+...-..-+..+...++++.|.++|..+...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 34555555556555444444444556778999999999888764
Done!