BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008001
(582 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium
discoideum GN=DDB_G0279265 PE=3 SV=2
Length = 228
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 349 GMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASH 408
G + +E +N ++ + NP L F L+Q + ++L+ G + AL+ A L P +
Sbjct: 81 GDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQDELAPQGEEN 140
Query: 409 PALLKPLKETLLALL 423
L+ L++T+ L+
Sbjct: 141 NKFLEELEKTISLLV 155
>sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog OS=Danio rerio
GN=gid8 PE=2 SV=1
Length = 228
Score = 36.6 bits (83), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 340 LGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACA 399
+ ++E+ KG EA+ IN++ + N L F L+Q ++L+ + AL A +
Sbjct: 68 IKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQS 127
Query: 400 HLGPLAASHPALLKPLKET--LLALLQPNE 427
L L ++ T LLA P E
Sbjct: 128 QLAEQGEESRECLTEMERTLALLAFDNPEE 157
>sp|Q9NWU2|GID8_HUMAN Glucose-induced degradation protein 8 homolog OS=Homo sapiens
GN=GID8 PE=1 SV=1
Length = 228
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 340 LGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACA 399
+ ++E+ KG EA+ IN++ + N L F L+Q ++L+ + AL A
Sbjct: 68 IKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQT 127
Query: 400 HLGPLAASHPALLKPLKET--LLALLQPNEDVLVKGFPLHTL 439
L L ++ T LLA P E G LHT+
Sbjct: 128 QLAEQGEESRECLTEMERTLALLAFDSPEESPF--GDLLHTM 167
>sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog OS=Gallus gallus
GN=GID8 PE=2 SV=1
Length = 228
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 340 LGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACA 399
+ ++E+ KG EA+ IN++ + N L F L+Q ++L+ + AL A
Sbjct: 68 IKIREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQT 127
Query: 400 HLGPLAASHPALLKPLKET--LLALLQPNE 427
L L ++ T LLA P E
Sbjct: 128 QLAEQGEESRECLTEMERTLALLAFDNPEE 157
>sp|P56744|DAT_ACIBA Diaminobutyrate--2-oxoglutarate aminotransferase OS=Acinetobacter
baumannii GN=dat PE=1 SV=1
Length = 445
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 421 ALLQPNEDVLVKGFPLHT--LATSLQVAIGRRLGIEEPQLMKILRATLHTHNEWFKLQMC 478
A++Q +D L G PLHT L T L+ A + L A L E + LQ C
Sbjct: 73 AVIQSIQDTLASGLPLHTLDLTTPLKDA-----------FTEALLAYLPGGKEEYCLQFC 121
Query: 479 ----KDRFESLLRIDLLKEVYTPFLATVAMSKSHADSTQGSSQITISSNARVSEDGSSPN 534
D E+ ++ L + YT + ++ S + T GS +T + +A+ + +G P
Sbjct: 122 GPSGADATEAAIK---LAKTYTGRSSVISFSGGYHGMTHGSLAMTGNLSAKNAVNGLMPG 178
>sp|P27357|TLP_WHEAT Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1
Length = 173
Score = 34.3 bits (77), Expect = 3.1, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 178 SGLSTPSGTQTISIPIKVD---KPESGCCSSRNCSLEMDCSISKNSDGETSVSNTIMDGS 234
S ++ P+GTQ I + SG C + +C ++ CS+S T TI GS
Sbjct: 52 SSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCGGQLSCSLSGRPPA-TLAEYTIGGGS 110
Query: 235 PENNTDVISIQGADVELRFTGGPTGSNEDCSTSGSHQPES 274
++ D+ I G ++ + F+ TG C P++
Sbjct: 111 TQDFYDISVIDGFNLAMDFSCS-TGDALQCRDPSCPPPQA 149
>sp|Q9D7M1|GID8_MOUSE Glucose-induced degradation protein 8 homolog OS=Mus musculus
GN=Gid8 PE=2 SV=1
Length = 228
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 340 LGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACA 399
+ ++E+ KG EA+ IN++ + N L F L+Q ++L+ + AL A
Sbjct: 68 IKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQT 127
Query: 400 HLGPLAASHPALLKPLKET--LLALLQPNE 427
L L ++ T LLA P E
Sbjct: 128 QLAEQGEESRECLTEMERTLALLAFDSPEE 157
>sp|Q32L52|GID8_BOVIN Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8
PE=2 SV=1
Length = 228
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%)
Query: 340 LGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACA 399
+ ++E+ KG EA+ IN++ + N L F L+Q ++L+ + AL A
Sbjct: 68 IKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQT 127
Query: 400 HLGPLAASHPALLKPLKETLLAL 422
L L ++ TL L
Sbjct: 128 QLAEQGEESRECLTEMERTLALL 150
>sp|P32937|PR1A_HORVU Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1
Length = 173
Score = 33.9 bits (76), Expect = 4.1, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 178 SGLSTPSGTQTISIPIKVD---KPESGCCSSRNCSLEMDCSISKNSDGETSVSNTIMDGS 234
S ++ P+GTQ I + SG C + +C ++ CS+S T TI GS
Sbjct: 52 SSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCGGQLSCSLSGQPPA-TLAEFTIGGGS 110
Query: 235 PENNTDVISIQGADVELRFTGGPTGSNEDCSTSGSHQPES 274
++ D+ I G ++ + F+ TG C P++
Sbjct: 111 TQDFYDISVIDGFNLAMDFSCS-TGDALQCRDPSCPPPQA 149
>sp|P32938|PR1C_HORVU Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1
Length = 173
Score = 33.5 bits (75), Expect = 4.5, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 178 SGLSTPSGTQTISIPIKVD---KPESGCCSSRNCSLEMDCSISKNSDGETSVSNTIMDGS 234
S ++ P+GTQ I + SG C + +C ++ CS+S T TI GS
Sbjct: 52 SSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCGGQLSCSLSGRPPA-TLAEFTIGGGS 110
Query: 235 PENNTDVISIQGADVELRFTGGPTGSNEDCSTSGSHQPES 274
++ D+ I G ++ + F+ TG C P++
Sbjct: 111 TQDFYDISVIDGFNLAMDFSCS-TGDALQCRDPSCPPPQA 149
>sp|Q5WFY0|MIAB_BACSK (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus clausii (strain KSM-K16) GN=miaB PE=3 SV=1
Length = 520
Score = 32.7 bits (73), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 143 DLFQAFQNELCQMRLDVSMLDELVREYCVYRGIVDSGLSTPSGTQTISIPIKVDKPESGC 202
DL F NE + D+ L E ++ Y I TP+ ++P+ V K
Sbjct: 377 DLIVGFPNETEEQFQDMLSLVEEIQFDAAYTYIYSPREGTPAARMEDNVPMSVKKERL-- 434
Query: 203 CSSRNCSLEMDCSISKNSDGETSVSNTIMDGSPENNTDVIS 243
+R +L D S +N D + + +++G + NTDV++
Sbjct: 435 --ARLNALVNDISNKRNLDYQDKIVEVLVEGESKKNTDVLA 473
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,267,786
Number of Sequences: 539616
Number of extensions: 8909274
Number of successful extensions: 23151
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 23089
Number of HSP's gapped (non-prelim): 78
length of query: 582
length of database: 191,569,459
effective HSP length: 123
effective length of query: 459
effective length of database: 125,196,691
effective search space: 57465281169
effective search space used: 57465281169
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)