Query 008001
Match_columns 582
No_of_seqs 91 out of 102
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 15:43:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tr8_A Conserved protein (MTH1 93.4 0.074 2.5E-06 46.5 4.5 38 112-149 62-99 (102)
2 2di0_A Activating signal coint 89.0 0.52 1.8E-05 39.2 4.9 40 542-581 11-51 (71)
3 2g3q_A Protein YBL047C; endocy 86.1 0.84 2.9E-05 33.2 4.1 38 544-582 4-41 (43)
4 1wiv_A UBP14, ubiquitin-specif 85.5 1.5 5.2E-05 35.9 5.8 38 111-149 25-62 (73)
5 2dak_A Ubiquitin carboxyl-term 84.6 1.1 3.8E-05 35.3 4.5 40 109-149 3-42 (63)
6 2dak_A Ubiquitin carboxyl-term 84.5 1.6 5.5E-05 34.4 5.3 38 543-581 8-45 (63)
7 2ekk_A UBA domain from E3 ubiq 84.4 2 7E-05 31.8 5.6 42 539-582 4-45 (47)
8 1vg5_A RSGI RUH-014, rhomboid 84.4 2.8 9.6E-05 34.6 6.9 40 542-582 27-66 (73)
9 1z96_A DNA-damage, UBA-domain 84.3 0.74 2.5E-05 32.4 3.0 33 115-148 4-36 (40)
10 2ooa_A E3 ubiquitin-protein li 84.0 0.88 3E-05 36.1 3.5 30 545-575 12-41 (52)
11 2cpw_A CBL-interacting protein 82.6 3.3 0.00011 33.0 6.5 39 543-582 18-57 (64)
12 1veg_A NEDD8 ultimate buster-1 81.6 5.3 0.00018 33.9 7.7 43 538-581 23-65 (83)
13 2ekk_A UBA domain from E3 ubiq 79.9 2.4 8.3E-05 31.4 4.6 37 111-149 5-41 (47)
14 2d9s_A CBL E3 ubiquitin protei 79.2 1.9 6.5E-05 34.3 3.9 30 545-575 10-39 (53)
15 1z96_A DNA-damage, UBA-domain 78.9 3 0.0001 29.2 4.6 36 545-581 5-40 (40)
16 1wji_A Tudor domain containing 77.8 2.8 9.5E-05 33.5 4.6 38 543-581 8-45 (63)
17 2dag_A Ubiquitin carboxyl-term 77.2 2.9 9.8E-05 34.3 4.6 38 111-149 5-43 (74)
18 1vek_A UBP14, ubiquitin-specif 76.6 4.7 0.00016 33.8 5.9 38 111-149 25-63 (84)
19 1wj7_A Hypothetical protein (R 74.3 4.2 0.00014 36.0 5.1 38 545-582 40-77 (104)
20 2g3q_A Protein YBL047C; endocy 73.7 2.2 7.5E-05 31.0 2.7 34 115-149 4-37 (43)
21 2dai_A Ubadc1, ubiquitin assoc 73.6 4 0.00014 34.3 4.7 35 114-149 28-62 (83)
22 1vg5_A RSGI RUH-014, rhomboid 72.7 5 0.00017 33.2 4.9 38 110-148 24-61 (73)
23 1vej_A Riken cDNA 4931431F19; 72.4 14 0.00046 30.7 7.5 44 538-582 24-67 (74)
24 2knz_A Ubiquilin-4; cytoplasm, 72.1 2.9 9.8E-05 32.1 3.2 32 117-149 13-45 (53)
25 1wji_A Tudor domain containing 71.9 3.8 0.00013 32.7 4.0 35 113-148 7-41 (63)
26 2dah_A Ubiquilin-3; UBA domain 71.5 9.6 0.00033 29.6 6.1 36 545-581 10-46 (54)
27 2crn_A Ubash3A protein; compac 70.6 3.4 0.00012 33.1 3.4 35 113-148 7-42 (64)
28 2jy5_A Ubiquilin-1; UBA, alter 70.6 5.4 0.00019 30.5 4.4 33 116-149 13-46 (52)
29 2dai_A Ubadc1, ubiquitin assoc 70.5 7.3 0.00025 32.7 5.6 40 541-581 26-65 (83)
30 1whc_A RSGI RUH-027, UBA/UBX 3 70.3 6.2 0.00021 31.4 4.8 39 542-581 7-46 (64)
31 1veg_A NEDD8 ultimate buster-1 70.0 8 0.00027 32.8 5.7 34 115-149 29-62 (83)
32 2cpw_A CBL-interacting protein 68.9 4.4 0.00015 32.3 3.7 35 114-149 18-53 (64)
33 1whc_A RSGI RUH-027, UBA/UBX 3 68.5 4.3 0.00015 32.3 3.6 37 112-149 6-43 (64)
34 2jy5_A Ubiquilin-1; UBA, alter 66.9 15 0.00051 28.0 6.2 42 540-582 9-50 (52)
35 1vek_A UBP14, ubiquitin-specif 65.6 16 0.00056 30.5 6.7 41 540-581 25-66 (84)
36 1ify_A HHR23A, UV excision rep 62.7 6.8 0.00023 29.5 3.5 37 544-581 8-44 (49)
37 2dag_A Ubiquitin carboxyl-term 61.7 16 0.00055 29.8 5.9 39 542-581 7-46 (74)
38 2dkl_A Trinucleotide repeat co 60.0 11 0.00038 31.8 4.7 42 540-582 17-58 (85)
39 1wj7_A Hypothetical protein (R 57.4 9.9 0.00034 33.6 4.1 34 116-149 40-73 (104)
40 1ify_A HHR23A, UV excision rep 56.4 6.3 0.00022 29.7 2.4 33 115-148 8-40 (49)
41 1wiv_A UBP14, ubiquitin-specif 54.3 19 0.00064 29.4 5.0 38 543-581 28-65 (73)
42 1wr1_B Ubiquitin-like protein 51.3 22 0.00077 28.0 4.9 42 539-581 13-54 (58)
43 2dzl_A Protein FAM100B; UBA-li 51.0 35 0.0012 27.4 6.0 41 541-581 10-54 (66)
44 2knz_A Ubiquilin-4; cytoplasm, 50.1 15 0.00053 28.0 3.7 40 540-581 8-48 (53)
45 1v92_A NSFL1 cofactor P47; 3-h 50.0 24 0.00082 25.4 4.6 37 545-581 6-42 (46)
46 2lbc_A Ubiquitin carboxyl-term 49.1 28 0.00096 30.3 5.7 41 540-581 74-114 (126)
47 1vej_A Riken cDNA 4931431F19; 48.5 27 0.00092 29.0 5.1 32 116-148 30-62 (74)
48 2lbc_A Ubiquitin carboxyl-term 47.3 19 0.00066 31.3 4.4 39 114-153 77-115 (126)
49 1wgn_A UBAP1, ubiquitin associ 46.6 16 0.00054 30.0 3.4 31 117-148 21-51 (63)
50 2lni_A Stress-induced-phosphop 46.4 57 0.002 24.6 6.5 60 334-401 15-77 (133)
51 2ooa_A E3 ubiquitin-protein li 44.8 12 0.00041 29.7 2.3 30 117-147 13-42 (52)
52 2xcb_A PCRH, regulatory protei 44.6 32 0.0011 27.9 5.1 63 341-412 24-89 (142)
53 2dal_A Protein KIAA0794; FAS a 41.8 36 0.0012 26.7 4.7 37 545-581 16-52 (62)
54 2vxg_A LD41624, GE-1, CG6181-P 41.7 41 0.0014 30.6 5.7 47 337-386 2-62 (139)
55 1tr8_A Conserved protein (MTH1 39.8 36 0.0012 29.6 4.8 37 541-577 62-98 (102)
56 2d9s_A CBL E3 ubiquitin protei 39.8 34 0.0012 27.2 4.2 31 116-147 10-40 (53)
57 2bwb_A Ubiquitin-like protein 36.9 56 0.0019 24.4 4.9 38 545-582 8-45 (46)
58 1dv0_A DNA repair protein HHR2 36.2 13 0.00043 28.0 1.2 38 544-582 4-41 (47)
59 2vgx_A Chaperone SYCD; alterna 35.2 55 0.0019 27.3 5.2 50 342-399 28-80 (148)
60 2crn_A Ubash3A protein; compac 34.4 63 0.0022 25.7 5.1 39 542-581 7-46 (64)
61 2dna_A Unnamed protein product 33.9 37 0.0013 27.8 3.7 31 117-148 21-52 (67)
62 2dkl_A Trinucleotide repeat co 33.8 31 0.0011 29.0 3.4 34 115-149 21-54 (85)
63 2bwb_A Ubiquitin-like protein 33.6 35 0.0012 25.5 3.3 32 116-148 8-40 (46)
64 2cp9_A EF-TS, EF-TSMT, elongat 32.5 56 0.0019 26.5 4.5 40 110-149 4-43 (64)
65 3mkr_A Coatomer subunit epsilo 32.3 63 0.0022 30.2 5.6 20 341-360 5-24 (291)
66 1wr1_B Ubiquitin-like protein 32.1 41 0.0014 26.5 3.6 32 116-148 18-50 (58)
67 4dbg_B Ring finger protein 31; 31.1 43 0.0015 31.8 4.1 37 118-154 60-101 (162)
68 1hh8_A P67PHOX, NCF-2, neutrop 28.9 1.3E+02 0.0046 25.0 6.6 59 335-401 6-64 (213)
69 2pm7_A Protein WEB1, protein t 27.6 47 0.0016 34.5 4.2 70 341-423 149-237 (399)
70 2dah_A Ubiquilin-3; UBA domain 26.9 83 0.0029 24.2 4.5 32 116-148 10-42 (54)
71 2dam_A ETEA protein; KIAA0887, 25.2 1.1E+02 0.0038 24.4 5.1 32 550-581 21-56 (67)
72 1yar_O Proteasome activator pr 24.8 88 0.003 30.6 5.2 51 30-80 29-92 (237)
73 1elw_A TPR1-domain of HOP; HOP 24.3 1.7E+02 0.0057 21.2 5.7 55 339-401 8-65 (118)
74 3u4t_A TPR repeat-containing p 24.2 2.6E+02 0.0088 24.0 7.7 60 343-412 11-73 (272)
75 3e46_A Ubiquitin-conjugating e 23.1 81 0.0028 31.0 4.7 37 545-582 216-252 (253)
76 2kc7_A BFR218_protein; tetratr 22.8 1.9E+02 0.0064 21.3 5.8 72 341-421 6-83 (99)
77 3gw4_A Uncharacterized protein 22.5 1.3E+02 0.0043 24.7 5.1 50 345-402 2-54 (203)
78 2dna_A Unnamed protein product 22.4 1.3E+02 0.0046 24.5 5.1 43 538-581 14-56 (67)
79 1etf_B REV peptide; complex (R 21.9 9.7 0.00033 26.5 -1.5 13 287-299 6-18 (26)
80 2j0p_A HEMS, hemin transport p 21.5 28 0.00095 36.0 1.1 91 72-175 136-241 (345)
81 1dv0_A DNA repair protein HHR2 21.4 31 0.0011 25.9 1.1 33 115-148 4-36 (47)
82 3ma5_A Tetratricopeptide repea 21.2 1.2E+02 0.0042 23.2 4.6 72 344-423 16-91 (100)
83 2xcb_A PCRH, regulatory protei 20.8 1.3E+02 0.0044 24.3 4.8 65 345-420 62-131 (142)
84 3zed_D Capsid protein VP3; vir 20.8 1E+02 0.0034 30.7 4.8 44 453-497 25-76 (242)
85 2x7l_M HIV REV; nuclear export 20.4 13 0.00043 33.6 -1.5 13 287-299 37-49 (115)
86 3q49_B STIP1 homology and U bo 20.1 1.6E+02 0.0054 22.7 5.0 54 340-401 14-70 (137)
No 1
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=93.39 E-value=0.074 Score=46.51 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=36.1
Q ss_pred CCCChhhHHHHHHHhccchhhHhHHHHhhhccHHHHHH
Q 008001 112 PPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 149 (582)
Q Consensus 112 ppF~EvdiQaLahaveltRq~AvdsLr~akGDl~~Afq 149 (582)
..+++.||.-+..-.+.||..|+.+|+-++||+..|..
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~ 99 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIM 99 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHH
Confidence 57999999999999999999999999999999999964
No 2
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=88.95 E-value=0.52 Score=39.23 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=35.0
Q ss_pred ccChhhHHHHHHHhc-CChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 542 VCDENAILKVMEFLA-LPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 542 ~~~e~ail~vmefla-lpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
+-=++.|-.|.|.+. |+.+=...+|..||+|+|.||+.||
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 334678888999874 9999999999999999999999987
No 3
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=86.13 E-value=0.84 Score=33.21 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=33.5
Q ss_pred ChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHhC
Q 008001 544 DENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 582 (582)
Q Consensus 544 ~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~~ 582 (582)
+|.+|-++|+ |-.||.+|+.-|...|||+|.-+.-||.
T Consensus 4 ~e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 4 KSLAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 5788889988 6799999999999999999998887763
No 4
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=85.46 E-value=1.5 Score=35.86 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=33.8
Q ss_pred CCCCChhhHHHHHHHhccchhhHhHHHHhhhccHHHHHH
Q 008001 111 APPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 149 (582)
Q Consensus 111 ~ppF~EvdiQaLahaveltRq~AvdsLr~akGDl~~Afq 149 (582)
.|..++..|+.|. ..+.+|+.|+.+||.++||+..|..
T Consensus 25 ~~~~~~~~v~~L~-~MGF~~~~a~~AL~~t~~nve~Ave 62 (73)
T 1wiv_A 25 TSDIDQSSVDTLL-SFGFAEDVARKALKASGGDIEKATD 62 (73)
T ss_dssp SCSSCHHHHHHHH-HHTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCCCHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHH
Confidence 5678999999997 5799999999999999999998853
No 5
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.63 E-value=1.1 Score=35.33 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=34.2
Q ss_pred cCCCCCChhhHHHHHHHhccchhhHhHHHHhhhccHHHHHH
Q 008001 109 YEAPPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 149 (582)
Q Consensus 109 ~e~ppF~EvdiQaLahaveltRq~AvdsLr~akGDl~~Afq 149 (582)
.+.+.+++..|+.|.. .+.+|..|+.+||.+.||+..|..
T Consensus 3 ~~~~~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e 42 (63)
T 2dak_A 3 SGSSGPPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD 42 (63)
T ss_dssp CCSCCCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3445678889999987 799999999999999999988853
No 6
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.46 E-value=1.6 Score=34.40 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=34.4
Q ss_pred cChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 543 CDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 543 ~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
.++..|-++|+ |-.||..|+.-|...+||+|..+.-||
T Consensus 8 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~ 45 (63)
T 2dak_A 8 PPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIF 45 (63)
T ss_dssp CCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57889999998 688999999999999999999888776
No 7
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.44 E-value=2 Score=31.83 Aligned_cols=42 Identities=12% Similarity=0.285 Sum_probs=36.1
Q ss_pred CccccChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHhC
Q 008001 539 ADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 582 (582)
Q Consensus 539 ~~~~~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~~ 582 (582)
++...++..|-++|+ |-.||..|+.-|... ||+|.-+.-||.
T Consensus 4 ~~~~~~~~~v~~L~~-MGF~~~~a~~AL~~~-~n~e~A~~~L~~ 45 (47)
T 2ekk_A 4 GSSGVNQQQLQQLMD-MGFTREHAMEALLNT-STMEQATEYLLT 45 (47)
T ss_dssp CCCSSCHHHHHHHHH-HHCCHHHHHHHHHHS-CSHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHH-cCCCHHHHHHHHHHc-CCHHHHHHHHHc
Confidence 356779999999999 789999999999998 599998887763
No 8
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=84.38 E-value=2.8 Score=34.64 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=35.0
Q ss_pred ccChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHhC
Q 008001 542 VCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 582 (582)
Q Consensus 542 ~~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~~ 582 (582)
.-.|..|-++|| |=.+|.+|+.-|...+||.|..+.-||.
T Consensus 27 ~~~ee~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 27 AASEEQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCCHHHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cccHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456788999998 5789999999999999999999988873
No 9
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=84.33 E-value=0.74 Score=32.43 Aligned_cols=33 Identities=27% Similarity=0.182 Sum_probs=29.0
Q ss_pred ChhhHHHHHHHhccchhhHhHHHHhhhccHHHHH
Q 008001 115 DEVDIQALAHAVKITRQGAVDSLRFARGDLFQAF 148 (582)
Q Consensus 115 ~EvdiQaLahaveltRq~AvdsLr~akGDl~~Af 148 (582)
.+..|+.|..- +.+|+.|+.+|+.+.||+..|.
T Consensus 4 ~~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~ 36 (40)
T 1z96_A 4 LNSKIAQLVSM-GFDPLEAAQALDAANGDLDVAA 36 (40)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHH
Confidence 35578888874 9999999999999999999886
No 10
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=83.97 E-value=0.88 Score=36.07 Aligned_cols=30 Identities=20% Similarity=0.188 Sum_probs=27.0
Q ss_pred hhhHHHHHHHhcCChhHHHHHHHHhcCCHHH
Q 008001 545 ENAILKVMEFLALPRADAIHLLAQYNGNAET 575 (582)
Q Consensus 545 e~ail~vmeflalpr~dai~ll~qy~g~~e~ 575 (582)
|..|-++|+ |-.+|.+||+.|++-+||+|-
T Consensus 12 ~~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~ 41 (52)
T 2ooa_A 12 DAKIAKLMG-EGYAFEEVKRALEIAQNNVEV 41 (52)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCCCHHH
Confidence 379999998 578999999999999999985
No 11
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.59 E-value=3.3 Score=32.98 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=34.7
Q ss_pred cChhhHHHHHHHhcCChhHHHHHHHHhcC-CHHHHHHHHhC
Q 008001 543 CDENAILKVMEFLALPRADAIHLLAQYNG-NAETVIQQIFA 582 (582)
Q Consensus 543 ~~e~ail~vmeflalpr~dai~ll~qy~g-~~e~viqq~~~ 582 (582)
.+|..|-++|+ |-.||..|+.-|...+| |+|.-+.-||.
T Consensus 18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 67889989988 68999999999999998 99998888773
No 12
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=81.64 E-value=5.3 Score=33.90 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=36.6
Q ss_pred CCccccChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 538 SADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 538 ~~~~~~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
.+...-+|..|-++|+. -.+|..|+..|...+||+|.-+.-||
T Consensus 23 ~~~~~~~ee~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~ 65 (83)
T 1veg_A 23 SRQASPSQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLA 65 (83)
T ss_dssp SSSCCCCHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33445578999999985 68999999999999999999988887
No 13
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.92 E-value=2.4 Score=31.42 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=31.6
Q ss_pred CCCCChhhHHHHHHHhccchhhHhHHHHhhhccHHHHHH
Q 008001 111 APPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 149 (582)
Q Consensus 111 ~ppF~EvdiQaLahaveltRq~AvdsLr~akGDl~~Afq 149 (582)
.|.+++..|+.|.. .+.+|..|+.+||.+ ||+..|..
T Consensus 5 ~~~~~~~~v~~L~~-MGF~~~~a~~AL~~~-~n~e~A~~ 41 (47)
T 2ekk_A 5 SSGVNQQQLQQLMD-MGFTREHAMEALLNT-STMEQATE 41 (47)
T ss_dssp CCSSCHHHHHHHHH-HHCCHHHHHHHHHHS-CSHHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCCHHHHHHHHHHc-CCHHHHHH
Confidence 35678888999986 799999999999999 69988863
No 14
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=79.23 E-value=1.9 Score=34.28 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=26.7
Q ss_pred hhhHHHHHHHhcCChhHHHHHHHHhcCCHHH
Q 008001 545 ENAILKVMEFLALPRADAIHLLAQYNGNAET 575 (582)
Q Consensus 545 e~ail~vmeflalpr~dai~ll~qy~g~~e~ 575 (582)
|..|-++|+ +-.+|.|||+.|++.+||+|.
T Consensus 10 e~~I~~L~~-lGF~r~~ai~AL~~a~nnve~ 39 (53)
T 2d9s_A 10 SSEIERLMS-QGYSYQDIQKALVIAHNNIEM 39 (53)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhcCCHHH
Confidence 466999998 578999999999999999986
No 15
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=78.89 E-value=3 Score=29.25 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=31.6
Q ss_pred hhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 545 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 545 e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
+.+|-++|+. -.+|..|++-|...|||.|.-+.-+|
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 5688889985 89999999999999999998887665
No 16
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=77.80 E-value=2.8 Score=33.48 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=33.8
Q ss_pred cChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 543 CDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 543 ~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
.|+.+|-++|+ |-.+|..|++-|...+||+|.-+.-||
T Consensus 8 ~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~ 45 (63)
T 1wji_A 8 VDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNVLL 45 (63)
T ss_dssp SCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 58899988887 678999999999999999998888776
No 17
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.17 E-value=2.9 Score=34.29 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=33.5
Q ss_pred CCCCChhhHHHHHHHhccchhhHhHHHHhhhc-cHHHHHH
Q 008001 111 APPFDEVDIQALAHAVKITRQGAVDSLRFARG-DLFQAFQ 149 (582)
Q Consensus 111 ~ppF~EvdiQaLahaveltRq~AvdsLr~akG-Dl~~Afq 149 (582)
.|.++|.-|+.|.. .+.+|..|+.+||+++| |+..|..
T Consensus 5 ~~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~e 43 (74)
T 2dag_A 5 SSGLDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMN 43 (74)
T ss_dssp CCSSCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHH
Confidence 45678999999987 79999999999999998 8988864
No 18
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=76.64 E-value=4.7 Score=33.82 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=33.6
Q ss_pred CCCCChhhHHHHHHHhccchhhHhHHHHhhh-ccHHHHHH
Q 008001 111 APPFDEVDIQALAHAVKITRQGAVDSLRFAR-GDLFQAFQ 149 (582)
Q Consensus 111 ~ppF~EvdiQaLahaveltRq~AvdsLr~ak-GDl~~Afq 149 (582)
.|.++|.-|+.|.. .+.+|..|+.+|++++ ||+..|..
T Consensus 25 ~~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~e 63 (84)
T 1vek_A 25 QPVANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMN 63 (84)
T ss_dssp CCCCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHH
Confidence 56779999999985 8999999999999997 79998864
No 19
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=74.26 E-value=4.2 Score=36.01 Aligned_cols=38 Identities=13% Similarity=0.352 Sum_probs=35.3
Q ss_pred hhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHhC
Q 008001 545 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 582 (582)
Q Consensus 545 e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~~ 582 (582)
|..|-+|||.--.++.+|+.-|.+.|||.+..|..||.
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 56799999999999999999999999999999999883
No 20
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=73.66 E-value=2.2 Score=30.97 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=29.2
Q ss_pred ChhhHHHHHHHhccchhhHhHHHHhhhccHHHHHH
Q 008001 115 DEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 149 (582)
Q Consensus 115 ~EvdiQaLahaveltRq~AvdsLr~akGDl~~Afq 149 (582)
+|..|+.|.. .+.+|..|+.+|+.+.||+..|..
T Consensus 4 ~e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~ 37 (43)
T 2g3q_A 4 KSLAVEELSG-MGFTEEEAHNALEKCNWDLEAATN 37 (43)
T ss_dssp HHHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHH
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHH
Confidence 4667888875 799999999999999999999863
No 21
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.62 E-value=4 Score=34.28 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=31.1
Q ss_pred CChhhHHHHHHHhccchhhHhHHHHhhhccHHHHHH
Q 008001 114 FDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 149 (582)
Q Consensus 114 F~EvdiQaLahaveltRq~AvdsLr~akGDl~~Afq 149 (582)
++|..|+.|.. .+.+|+.|+.+||++.||+..|..
T Consensus 28 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~e 62 (83)
T 2dai_A 28 VDEAALRQLTE-MGFPENRATKALQLNHMSVPQAME 62 (83)
T ss_dssp CCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHH
Confidence 46778999986 899999999999999999999864
No 22
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=72.70 E-value=5 Score=33.17 Aligned_cols=38 Identities=26% Similarity=0.177 Sum_probs=32.1
Q ss_pred CCCCCChhhHHHHHHHhccchhhHhHHHHhhhccHHHHH
Q 008001 110 EAPPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAF 148 (582)
Q Consensus 110 e~ppF~EvdiQaLahaveltRq~AvdsLr~akGDl~~Af 148 (582)
...+-.|..|+.|.. .+.+|+.|+.+||.+.||+..|.
T Consensus 24 ~~~~~~ee~I~~L~e-MGF~r~~a~~AL~~~~~nve~Av 61 (73)
T 1vg5_A 24 GRVAASEEQIQKLVA-MGFDRTQVEVALAAADDDLTVAV 61 (73)
T ss_dssp CCSCCCHHHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHH
T ss_pred cCCcccHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHH
Confidence 445556778998875 78999999999999999999885
No 23
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=72.38 E-value=14 Score=30.74 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=33.8
Q ss_pred CCccccChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHhC
Q 008001 538 SADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 582 (582)
Q Consensus 538 ~~~~~~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~~ 582 (582)
+++..| +..|-++||.=--.|..+|+-|...+||+|..|.-||.
T Consensus 24 ~pe~~y-e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 24 FTEGRY-QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp GTTTTS-HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CchHHH-HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 344455 55677777754356888899999999999999988873
No 24
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=72.13 E-value=2.9 Score=32.10 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=26.3
Q ss_pred hhHHHHHHHhcc-chhhHhHHHHhhhccHHHHHH
Q 008001 117 VDIQALAHAVKI-TRQGAVDSLRFARGDLFQAFQ 149 (582)
Q Consensus 117 vdiQaLahavel-tRq~AvdsLr~akGDl~~Afq 149 (582)
..|+.|. ..+. .|+.|+.+|+.+.||+..|..
T Consensus 13 ~~l~~L~-~MGF~~~~~~~~AL~~t~gnve~Ave 45 (53)
T 2knz_A 13 QQLEQLN-SMGFINREANLQALIATGGDINAAIE 45 (53)
T ss_dssp HHHHHHH-TTTCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 3476665 4677 999999999999999999853
No 25
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=71.91 E-value=3.8 Score=32.69 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=31.1
Q ss_pred CCChhhHHHHHHHhccchhhHhHHHHhhhccHHHHH
Q 008001 113 PFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAF 148 (582)
Q Consensus 113 pF~EvdiQaLahaveltRq~AvdsLr~akGDl~~Af 148 (582)
+++|..|+.|. ..+.+|..|+.+|+.+.||+..|.
T Consensus 7 ~~~~~~I~~L~-~MGF~~~~a~~AL~~~~~nve~A~ 41 (63)
T 1wji_A 7 GVDEKALKHIT-EMGFSKEASRQALMDNGNNLEAAL 41 (63)
T ss_dssp SSCHHHHHHHH-TTTCCHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHH
Confidence 46888898887 589999999999999999998884
No 26
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=71.54 E-value=9.6 Score=29.55 Aligned_cols=36 Identities=6% Similarity=0.256 Sum_probs=28.9
Q ss_pred hhhHHHHHHHhcCChhH-HHHHHHHhcCCHHHHHHHHh
Q 008001 545 ENAILKVMEFLALPRAD-AIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 545 e~ail~vmeflalpr~d-ai~ll~qy~g~~e~viqq~~ 581 (582)
+..|-+++|. =..+.+ +|+.|...|||+|..|.-||
T Consensus 10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~ 46 (54)
T 2dah_A 10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLR 46 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5677777776 455555 69999999999999998887
No 27
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=70.61 E-value=3.4 Score=33.07 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=31.4
Q ss_pred CCChhhHHHHHHHhccchhhHhHHHHhhhc-cHHHHH
Q 008001 113 PFDEVDIQALAHAVKITRQGAVDSLRFARG-DLFQAF 148 (582)
Q Consensus 113 pF~EvdiQaLahaveltRq~AvdsLr~akG-Dl~~Af 148 (582)
+.+|..||.|.. .+.+|..|+.+|+++++ |+..|+
T Consensus 7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~ 42 (64)
T 2crn_A 7 GSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEAL 42 (64)
T ss_dssp CCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence 457888999997 89999999999999998 998886
No 28
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=70.55 E-value=5.4 Score=30.50 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=27.9
Q ss_pred hhhHHHHHHHhcc-chhhHhHHHHhhhccHHHHHH
Q 008001 116 EVDIQALAHAVKI-TRQGAVDSLRFARGDLFQAFQ 149 (582)
Q Consensus 116 EvdiQaLahavel-tRq~AvdsLr~akGDl~~Afq 149 (582)
+..|+.|. ..+. .|+.++.+|+.+.||+..|..
T Consensus 13 ~~~l~~L~-~MGF~~~~~~~~AL~~t~gn~e~A~e 46 (52)
T 2jy5_A 13 QQQLEQLS-AMGFLNREANLQALIATGGDINAAIE 46 (52)
T ss_dssp HHHHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 45788876 4678 999999999999999999853
No 29
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.52 E-value=7.3 Score=32.68 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=35.9
Q ss_pred cccChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 541 FVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 541 ~~~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
...++..|-++|+ |-.||..|+.-|...|||+|.-+.-||
T Consensus 26 ~~~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~ 65 (83)
T 2dai_A 26 ERVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLI 65 (83)
T ss_dssp SSCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3578999999999 789999999999999999999888776
No 30
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=70.28 E-value=6.2 Score=31.38 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=34.8
Q ss_pred ccChhhHHHHHHHhcCChhHHHHHHHHh-cCCHHHHHHHHh
Q 008001 542 VCDENAILKVMEFLALPRADAIHLLAQY-NGNAETVIQQIF 581 (582)
Q Consensus 542 ~~~e~ail~vmeflalpr~dai~ll~qy-~g~~e~viqq~~ 581 (582)
..|+..|-++|+ |-.||..|+.-|... |||+|.-+.-||
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl 46 (64)
T 1whc_A 7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLM 46 (64)
T ss_dssp CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 568899999998 789999999999999 799999888776
No 31
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=69.99 E-value=8 Score=32.80 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=30.4
Q ss_pred ChhhHHHHHHHhccchhhHhHHHHhhhccHHHHHH
Q 008001 115 DEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 149 (582)
Q Consensus 115 ~EvdiQaLahaveltRq~AvdsLr~akGDl~~Afq 149 (582)
+|..||.|.. .+.+|..|+.+||.+.||+..|..
T Consensus 29 ~ee~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e 62 (83)
T 1veg_A 29 SQESINQLVY-MGFDTVVAEAALRVFGGNVQLAAQ 62 (83)
T ss_dssp CHHHHHHHHH-HSCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 6888999985 699999999999999999998854
No 32
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=68.86 E-value=4.4 Score=32.31 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=31.2
Q ss_pred CChhhHHHHHHHhccchhhHhHHHHhhhc-cHHHHHH
Q 008001 114 FDEVDIQALAHAVKITRQGAVDSLRFARG-DLFQAFQ 149 (582)
Q Consensus 114 F~EvdiQaLahaveltRq~AvdsLr~akG-Dl~~Afq 149 (582)
.+|..|+.|.. .+.+|+.|+.+||.+.| |+..|..
T Consensus 18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~e 53 (64)
T 2cpw_A 18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTACD 53 (64)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 56778999986 89999999999999999 9999874
No 33
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=68.49 E-value=4.3 Score=32.31 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCCChhhHHHHHHHhccchhhHhHHHHhh-hccHHHHHH
Q 008001 112 PPFDEVDIQALAHAVKITRQGAVDSLRFA-RGDLFQAFQ 149 (582)
Q Consensus 112 ppF~EvdiQaLahaveltRq~AvdsLr~a-kGDl~~Afq 149 (582)
+.++|..|+.|.. .+.+|..|+.+||.+ .||+..|..
T Consensus 6 ~~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~e 43 (64)
T 1whc_A 6 SGAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAMD 43 (64)
T ss_dssp CCCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 3567888999985 899999999999999 599988853
No 34
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=66.95 E-value=15 Score=28.03 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=33.7
Q ss_pred ccccChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHhC
Q 008001 540 DFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 582 (582)
Q Consensus 540 ~~~~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~~ 582 (582)
+..| +..|-++||.=--+|..+|..|...+||+|..+.-||.
T Consensus 9 ~~~~-~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 9 EVRF-QQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp TTTT-HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hhHH-HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4344 66788888754339999999999999999999988874
No 35
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=65.59 E-value=16 Score=30.52 Aligned_cols=41 Identities=7% Similarity=0.212 Sum_probs=35.8
Q ss_pred ccccChhhHHHHHHHhcCChhHHHHHHHHhc-CCHHHHHHHHh
Q 008001 540 DFVCDENAILKVMEFLALPRADAIHLLAQYN-GNAETVIQQIF 581 (582)
Q Consensus 540 ~~~~~e~ail~vmeflalpr~dai~ll~qy~-g~~e~viqq~~ 581 (582)
....++.+|-++|+ |-.||..|+..|...+ ||+|.-+.-||
T Consensus 25 ~~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~ 66 (84)
T 1vek_A 25 QPVANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLL 66 (84)
T ss_dssp CCCCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45779999999999 7899999999998884 89998887776
No 36
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=62.65 E-value=6.8 Score=29.54 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=31.7
Q ss_pred ChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 544 DENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 544 ~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
+|..|-++||. -.+|..|+.-|...+||+|..+.-||
T Consensus 8 ~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~ 44 (49)
T 1ify_A 8 YETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLL 44 (49)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 56778777775 57999999999999999999888776
No 37
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.73 E-value=16 Score=29.83 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=34.8
Q ss_pred ccChhhHHHHHHHhcCChhHHHHHHHHhcC-CHHHHHHHHh
Q 008001 542 VCDENAILKVMEFLALPRADAIHLLAQYNG-NAETVIQQIF 581 (582)
Q Consensus 542 ~~~e~ail~vmeflalpr~dai~ll~qy~g-~~e~viqq~~ 581 (582)
..||..|-++|+ |-.||..|+..|...+| |+|.-+.-||
T Consensus 7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~ 46 (74)
T 2dag_A 7 GLDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVM 46 (74)
T ss_dssp SSCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 568999999999 78999999999999998 7998888776
No 38
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=60.01 E-value=11 Score=31.79 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=35.8
Q ss_pred ccccChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHhC
Q 008001 540 DFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 582 (582)
Q Consensus 540 ~~~~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~~ 582 (582)
+.-.|+.+|-++|+ |-.||..|+..|...+||+|.-+.-||.
T Consensus 17 ~~~~n~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 17 EAWIMSRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred ccccCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33457889999988 6899999999999999999999888773
No 39
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=57.40 E-value=9.9 Score=33.64 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=31.6
Q ss_pred hhhHHHHHHHhccchhhHhHHHHhhhccHHHHHH
Q 008001 116 EVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 149 (582)
Q Consensus 116 EvdiQaLahaveltRq~AvdsLr~akGDl~~Afq 149 (582)
|.+|+.|+.-.+.++..|+.+|..+.||+-.|..
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~ 73 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAIN 73 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHH
Confidence 6789999999999999999999999999999954
No 40
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=56.36 E-value=6.3 Score=29.74 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=28.1
Q ss_pred ChhhHHHHHHHhccchhhHhHHHHhhhccHHHHH
Q 008001 115 DEVDIQALAHAVKITRQGAVDSLRFARGDLFQAF 148 (582)
Q Consensus 115 ~EvdiQaLahaveltRq~AvdsLr~akGDl~~Af 148 (582)
+|..||.|. ..+.+|+.|+.+||.+.||+..|.
T Consensus 8 ~~~~i~~L~-~MGF~~~~a~~AL~~~~~n~e~A~ 40 (49)
T 1ify_A 8 YETMLTEIM-SMGYERERVVAALRASYNNPHRAV 40 (49)
T ss_dssp HHHHHHHHH-HTTCCHHHHHHHHHTTTSCSHHHH
T ss_pred CHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHH
Confidence 456677775 568999999999999999999885
No 41
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=54.27 E-value=19 Score=29.39 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=33.2
Q ss_pred cChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 543 CDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 543 ~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
.++..|-++|| |-.+|..|+.-|...+||+|.-+.-||
T Consensus 28 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~ 65 (73)
T 1wiv_A 28 IDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATDWVF 65 (73)
T ss_dssp SCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 57888988877 467999999999999999999888776
No 42
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=51.27 E-value=22 Score=27.99 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=32.0
Q ss_pred CccccChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 539 ADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 539 ~~~~~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
++..| +..|-+++|.=--.|..+|+-|...+||+|..|.-||
T Consensus 13 pe~~~-~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~ 54 (58)
T 1wr1_B 13 PEERY-EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL 54 (58)
T ss_dssp HHHHT-HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hHHHH-HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34455 5567777775334577889999999999999998877
No 43
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.00 E-value=35 Score=27.41 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=34.4
Q ss_pred cccCh----hhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 541 FVCDE----NAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 541 ~~~~e----~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
+.+++ ..|-..|++-....+-|++.|..+++|.|.-|...|
T Consensus 10 ~~m~~~~~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff 54 (66)
T 2dzl_A 10 VNMDELRHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFF 54 (66)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHhhcCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45555 568888888888999999999999999999888766
No 44
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=50.11 E-value=15 Score=28.01 Aligned_cols=40 Identities=10% Similarity=0.307 Sum_probs=32.1
Q ss_pred ccccChhhHHHHHHHhcC-ChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 540 DFVCDENAILKVMEFLAL-PRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 540 ~~~~~e~ail~vmeflal-pr~dai~ll~qy~g~~e~viqq~~ 581 (582)
+.-| +..|-++||. -. +|..|+..|...|||+|..|.-||
T Consensus 8 e~~~-~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~ 48 (53)
T 2knz_A 8 EVRF-QQQLEQLNSM-GFINREANLQALIATGGDINAAIERLL 48 (53)
T ss_dssp HHHH-HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHH-HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4344 5567777774 45 999999999999999999998876
No 45
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=50.02 E-value=24 Score=25.41 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=31.6
Q ss_pred hhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 545 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 545 e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
+..|...|++-......|+++|...++|.|.-|.-.|
T Consensus 6 ~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3567788888888999999999999999999887665
No 46
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=49.10 E-value=28 Score=30.29 Aligned_cols=41 Identities=27% Similarity=0.350 Sum_probs=35.9
Q ss_pred ccccChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 540 DFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 540 ~~~~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
+...+|..|-.+|+ |-.+|..|+..|...+||+|.-+.-||
T Consensus 74 ~~~~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~ 114 (126)
T 2lbc_A 74 DNQPPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWIF 114 (126)
T ss_dssp CCCCCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCcCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34468899999999 689999999999999999999888776
No 47
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=48.47 E-value=27 Score=28.96 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=26.7
Q ss_pred hhhHHHHHHHhcc-chhhHhHHHHhhhccHHHHH
Q 008001 116 EVDIQALAHAVKI-TRQGAVDSLRFARGDLFQAF 148 (582)
Q Consensus 116 EvdiQaLahavel-tRq~AvdsLr~akGDl~~Af 148 (582)
|..|+.|.. .+. .|+.++.+|+.+.||+..|.
T Consensus 30 e~qi~qL~e-MGF~dr~~~~~AL~~t~Gnve~Av 62 (74)
T 1vej_A 30 QQELEELKA-LGFANRDANLQALVATDGDIHAAI 62 (74)
T ss_dssp HHHHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHH
Confidence 567888875 566 58999999999999999885
No 48
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=47.28 E-value=19 Score=31.34 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=33.3
Q ss_pred CChhhHHHHHHHhccchhhHhHHHHhhhccHHHHHHHhhh
Q 008001 114 FDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQNELC 153 (582)
Q Consensus 114 F~EvdiQaLahaveltRq~AvdsLr~akGDl~~AfqnEL~ 153 (582)
.+|.-|+.|.. .+.+|..|+.+|+.+.||+..|..-=+.
T Consensus 77 ~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 77 PPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp CCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 57888999976 7999999999999999999999754333
No 49
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.61 E-value=16 Score=30.00 Aligned_cols=31 Identities=3% Similarity=0.101 Sum_probs=25.7
Q ss_pred hhHHHHHHHhccchhhHhHHHHhhhccHHHHH
Q 008001 117 VDIQALAHAVKITRQGAVDSLRFARGDLFQAF 148 (582)
Q Consensus 117 vdiQaLahaveltRq~AvdsLr~akGDl~~Af 148 (582)
..|..|. +.+.|++-|.-+||.+.||+.+|-
T Consensus 21 e~V~~Lv-sMGFs~~qA~kALKat~~NvErAa 51 (63)
T 1wgn_A 21 QCVETVV-NMGYSYECVLRAMKKKGENIEQIL 51 (63)
T ss_dssp HHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence 3455554 788999999999999999999984
No 50
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=46.36 E-value=57 Score=24.59 Aligned_cols=60 Identities=12% Similarity=0.000 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhc---cCCCccccCcccchhhhHHHHHHHHhcCChhHHHHHHHhhc
Q 008001 334 ENYEIVLGMKELAGKGMAAEAVEEINA---MDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHL 401 (582)
Q Consensus 334 DsIE~R~~IReAIq~G~IqeAIelVNe---LdPeILDtNP~L~FhLQQqqLIELIR~GdieeALeFAq~~L 401 (582)
........-......|+.++|+...++ ++|+ ++..++.+=.. +...|+.++|+++.+.-+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~----~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK----DAKLYSNRAAC----YTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----CHHHHHHHHHH----HTTTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHH----HHHhccHHHHHHHHHHHH
Confidence 334445556667899999999998765 5554 34444433322 467899999988766544
No 51
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=44.79 E-value=12 Score=29.68 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=25.3
Q ss_pred hhHHHHHHHhccchhhHhHHHHhhhccHHHH
Q 008001 117 VDIQALAHAVKITRQGAVDSLRFARGDLFQA 147 (582)
Q Consensus 117 vdiQaLahaveltRq~AvdsLr~akGDl~~A 147 (582)
.-|+.|. +.+-+|+.|+.+|+.|.||+-.|
T Consensus 13 ~~Ia~Lm-~mGFsr~~ai~AL~~a~nnve~A 42 (52)
T 2ooa_A 13 AKIAKLM-GEGYAFEEVKRALEIAQNNVEVA 42 (52)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHhCCCHHHH
Confidence 4577765 57899999999999999998766
No 52
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=44.65 E-value=32 Score=27.87 Aligned_cols=63 Identities=16% Similarity=0.025 Sum_probs=38.7
Q ss_pred HHHHHHhcCCHHHHHHHHhc---cCCCccccCcccchhhhHHHHHHHHhcCChhHHHHHHHhhcCcccccCccch
Q 008001 341 GMKELAGKGMAAEAVEEINA---MDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHPALL 412 (582)
Q Consensus 341 ~IReAIq~G~IqeAIelVNe---LdPeILDtNP~L~FhLQQqqLIELIR~GdieeALeFAq~~LaPrae~nP~fL 412 (582)
.-....+.|+.++|+..... ++|. |+..+|.|=.+ +.+.|+.++|++.-+.-+. ...+||..+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~----~~~~g~~~~A~~~~~~al~-~~p~~~~~~ 89 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHY----DARYFLGLGAC----RQSLGLYEQALQSYSYGAL-MDINEPRFP 89 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHH----HHHTTCHHHHHHHHHHHHH-HCTTCTHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCc----cHHHHHHHHHH----HHHHhhHHHHHHHHHHHHh-cCCCCcHHH
Confidence 34556788888888887654 5673 56666655433 3467888888877665432 223445443
No 53
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.75 E-value=36 Score=26.74 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=31.7
Q ss_pred hhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 545 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 545 e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
++.|...|++-......|+++|...++|.|.-|+-.|
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3467788888888899999999999999999887665
No 54
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=41.68 E-value=41 Score=30.58 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-------------HhccCCCc-cccCcccchhhhHHHHHHHHh
Q 008001 337 EIVLGMKELAGKGMAAEAVEE-------------INAMDADF-FVQNPMLLFQLKQVEFLKLVS 386 (582)
Q Consensus 337 E~R~~IReAIq~G~IqeAIel-------------VNeLdPeI-LDtNP~L~FhLQQqqLIELIR 386 (582)
+.+.+|.++++.|++++|+.. ...+||.. |-.+|. .|.|.=|+-||.
T Consensus 2 ~~~~~I~~Ll~~g~~eeAf~~aL~ssd~~lv~~lc~~~dp~~~~~~~~~---~Lsq~vLLSLiq 62 (139)
T 2vxg_A 2 AMGDSIKQLLMAGQINKAFHQALLANDLGLVEFTLRHTDSNQAFAPEGC---RLEQKVLLSLIQ 62 (139)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHSCHHHHTC-------CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHhCcHHHHHHHHHcCCHHHhcCCCCC---CccHHHHHHHHH
Confidence 356779999999999999876 56677774 544433 466777777765
No 55
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=39.83 E-value=36 Score=29.65 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=33.3
Q ss_pred cccChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHH
Q 008001 541 FVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVI 577 (582)
Q Consensus 541 ~~~~e~ail~vmeflalpr~dai~ll~qy~g~~e~vi 577 (582)
.-.++.+|-.||+=.-.+|+.|++-|...|||.=+-|
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai 98 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGGDLAEAI 98 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHH
Confidence 4688999999999999999999999999999975544
No 56
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.80 E-value=34 Score=27.22 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=26.1
Q ss_pred hhhHHHHHHHhccchhhHhHHHHhhhccHHHH
Q 008001 116 EVDIQALAHAVKITRQGAVDSLRFARGDLFQA 147 (582)
Q Consensus 116 EvdiQaLahaveltRq~AvdsLr~akGDl~~A 147 (582)
|.-|..|. ..+-+|+.|+.+|+.|.||+..|
T Consensus 10 e~~I~~L~-~lGF~r~~ai~AL~~a~nnve~A 40 (53)
T 2d9s_A 10 SSEIERLM-SQGYSYQDIQKALVIAHNNIEMA 40 (53)
T ss_dssp HHHHHHHH-HHTCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHhcCCHHHH
Confidence 35587775 57899999999999999998766
No 57
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=36.88 E-value=56 Score=24.42 Aligned_cols=38 Identities=8% Similarity=0.197 Sum_probs=29.1
Q ss_pred hhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHhC
Q 008001 545 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 582 (582)
Q Consensus 545 e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~~ 582 (582)
+..|-++|+.=--.|..+|+-|...+||+|..+.-||+
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 45666666643235777899999999999999988874
No 58
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=36.19 E-value=13 Score=28.02 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=31.6
Q ss_pred ChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHhC
Q 008001 544 DENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 582 (582)
Q Consensus 544 ~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~~ 582 (582)
++.+|-++++. -.||..||+-|...+||.|.-..-||+
T Consensus 4 e~eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 4 EKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp CHHHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 56777777654 689999999999999999988877763
No 59
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=35.17 E-value=55 Score=27.29 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=29.4
Q ss_pred HHHHHhcCCHHHHHHHHhc---cCCCccccCcccchhhhHHHHHHHHhcCChhHHHHHHHh
Q 008001 342 MKELAGKGMAAEAVEEINA---MDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACA 399 (582)
Q Consensus 342 IReAIq~G~IqeAIelVNe---LdPeILDtNP~L~FhLQQqqLIELIR~GdieeALeFAq~ 399 (582)
-......|+.++|+...+. ++|. |+..+|.|=.+ +.+.|+.++|++.-+.
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~----~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVLDHY----DSRFFLGLGAC----RQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHH----HHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHcCcc----cHHHHHHHHHH----HHHHhhHHHHHHHHHH
Confidence 3455677777777776553 4663 45555544332 2456777777766554
No 60
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.37 E-value=63 Score=25.69 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=32.8
Q ss_pred ccChhhHHHHHHHhcCChhHHHHHHHHhcC-CHHHHHHHHh
Q 008001 542 VCDENAILKVMEFLALPRADAIHLLAQYNG-NAETVIQQIF 581 (582)
Q Consensus 542 ~~~e~ail~vmeflalpr~dai~ll~qy~g-~~e~viqq~~ 581 (582)
..||..|-++|| |-.||..|++-|..-++ |+|.-+.-||
T Consensus 7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~ 46 (64)
T 2crn_A 7 GSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLH 46 (64)
T ss_dssp CCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 347889999999 89999999999998766 8998776665
No 61
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.88 E-value=37 Score=27.79 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=23.4
Q ss_pred hhHHHHHHHhccc-hhhHhHHHHhhhccHHHHH
Q 008001 117 VDIQALAHAVKIT-RQGAVDSLRFARGDLFQAF 148 (582)
Q Consensus 117 vdiQaLahavelt-Rq~AvdsLr~akGDl~~Af 148 (582)
..|+.|. +.+.+ ||..+.+||.+.||+..|.
T Consensus 21 ~ql~qL~-~MGF~d~~an~~AL~at~Gnve~Av 52 (67)
T 2dna_A 21 KEMECLQ-AMGFVNYNANLQALIATDGDTNAAI 52 (67)
T ss_dssp HHHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHH
Confidence 3566665 56755 5555999999999999885
No 62
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.81 E-value=31 Score=29.03 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=29.0
Q ss_pred ChhhHHHHHHHhccchhhHhHHHHhhhccHHHHHH
Q 008001 115 DEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 149 (582)
Q Consensus 115 ~EvdiQaLahaveltRq~AvdsLr~akGDl~~Afq 149 (582)
++.-|+.|.. .+.+|+.|+.+|+.+.||+..|..
T Consensus 21 n~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~e 54 (85)
T 2dkl_A 21 MSRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMS 54 (85)
T ss_dssp HHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4666777775 789999999999999999999974
No 63
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=33.57 E-value=35 Score=25.52 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.6
Q ss_pred hhhHHHHHHHhccc-hhhHhHHHHhhhccHHHHH
Q 008001 116 EVDIQALAHAVKIT-RQGAVDSLRFARGDLFQAF 148 (582)
Q Consensus 116 EvdiQaLahavelt-Rq~AvdsLr~akGDl~~Af 148 (582)
|..|+.|. ..+.+ |+.++.+|+.+.||+..|.
T Consensus 8 ~~~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Av 40 (46)
T 2bwb_A 8 EHQLRQLN-DMGFFDFDRNVAALRRSGGSVQGAL 40 (46)
T ss_dssp HHHHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHH
Confidence 45677776 45764 8888999999999999884
No 64
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=32.53 E-value=56 Score=26.53 Aligned_cols=40 Identities=18% Similarity=0.052 Sum_probs=36.5
Q ss_pred CCCCCChhhHHHHHHHhccchhhHhHHHHhhhccHHHHHH
Q 008001 110 EAPPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 149 (582)
Q Consensus 110 e~ppF~EvdiQaLahaveltRq~AvdsLr~akGDl~~Afq 149 (582)
..+.++..+|..|..--..+-.++-.+|--+.||+.+|+.
T Consensus 4 ~~~~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~ 43 (64)
T 2cp9_A 4 GSSGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEI 43 (64)
T ss_dssp SSSCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CcccCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4567788999999999999999999999999999999984
No 65
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=32.33 E-value=63 Score=30.17 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHhc
Q 008001 341 GMKELAGKGMAAEAVEEINA 360 (582)
Q Consensus 341 ~IReAIq~G~IqeAIelVNe 360 (582)
.||++...|+.++||..+++
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~ 24 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQR 24 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555554433
No 66
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=32.15 E-value=41 Score=26.47 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=25.8
Q ss_pred hhhHHHHHHHhcc-chhhHhHHHHhhhccHHHHH
Q 008001 116 EVDIQALAHAVKI-TRQGAVDSLRFARGDLFQAF 148 (582)
Q Consensus 116 EvdiQaLahavel-tRq~AvdsLr~akGDl~~Af 148 (582)
|..|+.|.. .+. .|+.++.+|+.+.||+..|.
T Consensus 18 ~~qi~~L~~-MGF~d~~~~~~AL~~~~gnve~Av 50 (58)
T 1wr1_B 18 EHQLRQLND-MGFFDFDRNVAALRRSGGSVQGAL 50 (58)
T ss_dssp HHHHHHHHH-HTCCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHH
Confidence 446777764 566 48899999999999999884
No 67
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=31.11 E-value=43 Score=31.77 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=31.1
Q ss_pred hHHHHHHHhc-----cchhhHhHHHHhhhccHHHHHHHhhhc
Q 008001 118 DIQALAHAVK-----ITRQGAVDSLRFARGDLFQAFQNELCQ 154 (582)
Q Consensus 118 diQaLahave-----ltRq~AvdsLr~akGDl~~AfqnEL~r 154 (582)
-||+||-.++ +|+++|-+|++-++||+-.|+..=+++
T Consensus 60 ~V~~la~~~~~~~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~ 101 (162)
T 4dbg_B 60 MVAELAGQQDPGLGAFSCQEARRAWLDRHGNLDEAVEECVRT 101 (162)
T ss_dssp HHHHHHHHHCGGGCCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHHccCChHHHHHHHHHH
Confidence 4788887774 899999999999999999999865543
No 68
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=28.92 E-value=1.3e+02 Score=25.02 Aligned_cols=59 Identities=10% Similarity=0.016 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhccCCCccccCcccchhhhHHHHHHHHhcCChhHHHHHHHhhc
Q 008001 335 NYEIVLGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHL 401 (582)
Q Consensus 335 sIE~R~~IReAIq~G~IqeAIelVNeLdPeILDtNP~L~FhLQQqqLIELIR~GdieeALeFAq~~L 401 (582)
.+..-..-......|+.++|++...+.- +.++..+|.+=.. +.+.|+.++|++.-+.-+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~----~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCM----YTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHH----HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHH----HHHcCCHHHHHHHHHHHH
Confidence 3444444556678999999999998872 4466665554433 457899999988776644
No 69
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=27.57 E-value=47 Score=34.52 Aligned_cols=70 Identities=11% Similarity=-0.046 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHH-------------HHhccCCCcc-ccCcccchhhh-----HHHHHHHHhcCChhHHHHHHHhhc
Q 008001 341 GMKELAGKGMAAEAVE-------------EINAMDADFF-VQNPMLLFQLK-----QVEFLKLVSCGDHSGALRVACAHL 401 (582)
Q Consensus 341 ~IReAIq~G~IqeAIe-------------lVNeLdPeIL-DtNP~L~FhLQ-----QqqLIELIR~GdieeALeFAq~~L 401 (582)
.|++++-.|++++||+ +....+|+++ +.=..=||.-+ .+++|-.|-.||+++.+.=
T Consensus 149 ~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d~V~~----- 223 (399)
T 2pm7_A 149 TISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDDLVEN----- 223 (399)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHHHHHH-----
T ss_pred HHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHHHHhc-----
Confidence 4556666666665555 4677899999 77666777654 3477888889999986541
Q ss_pred CcccccCccchhhHHHHHHHhc
Q 008001 402 GPLAASHPALLKPLKETLLALL 423 (582)
Q Consensus 402 aPrae~nP~fL~eLErTMALLA 423 (582)
.=|+.=++||++|+
T Consensus 224 --------~~l~~WkE~La~i~ 237 (399)
T 2pm7_A 224 --------LDVSQWKFISKAIQ 237 (399)
T ss_dssp --------BCGGGHHHHHHHHH
T ss_pred --------CChhhHHHHHHHHH
Confidence 12889999999987
No 70
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.89 E-value=83 Score=24.24 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.5
Q ss_pred hhhHHHHHHHhccch-hhHhHHHHhhhccHHHHH
Q 008001 116 EVDIQALAHAVKITR-QGAVDSLRFARGDLFQAF 148 (582)
Q Consensus 116 EvdiQaLahaveltR-q~AvdsLr~akGDl~~Af 148 (582)
+..|+.|. ..+.++ |.++.+|+.+.||+..|-
T Consensus 10 ~~~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Av 42 (54)
T 2dah_A 10 QVQLEQLR-SMGFLNREANLQALIATGGDVDAAV 42 (54)
T ss_dssp HHHHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHH
Confidence 56688776 558866 456999999999999884
No 71
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.20 E-value=1.1e+02 Score=24.39 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=25.2
Q ss_pred HHHHHhcC----ChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 550 KVMEFLAL----PRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 550 ~vmeflal----pr~dai~ll~qy~g~~e~viqq~~ 581 (582)
+|-+|.++ ....|+++|..+|+|.|.-|+..|
T Consensus 21 ~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 21 KLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45555554 457899999999999999988766
No 72
>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Trypanosoma brucei} SCOP: a.24.8.1 PDB: 1ya7_O 1yau_O 1fnt_c 3jse_O 3jrm_O 3jtl_O 1z7q_c 3ipm_O
Probab=24.77 E-value=88 Score=30.59 Aligned_cols=51 Identities=27% Similarity=0.440 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccC-----------c--hhHHHHHHHHHHhhhhhccc
Q 008001 30 PVAIEWAERRRFEIAGLMSSVLRAHLHAYD-----------P--VFAMTLRYLISIHKEFCFHQ 80 (582)
Q Consensus 30 pva~ews~~rR~~lA~~~ss~lra~l~a~d-----------P--~~Sm~lRyLisiH~~~c~~~ 80 (582)
-|.+||+.+.=.+|+++-+..--|+..... | +++|.-+|---.|+.||--.
T Consensus 29 avvEeWas~~l~~~e~~A~~A~~a~~~i~~~~Yt~d~AE~vP~~v~~~L~~~Q~~~h~iY~~AE 92 (237)
T 1yar_O 29 AVIEEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAE 92 (237)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCCCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhhcCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 578999999999999988765555554432 4 89999999999999999654
No 73
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=24.33 E-value=1.7e+02 Score=21.24 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhc---cCCCccccCcccchhhhHHHHHHHHhcCChhHHHHHHHhhc
Q 008001 339 VLGMKELAGKGMAAEAVEEINA---MDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHL 401 (582)
Q Consensus 339 R~~IReAIq~G~IqeAIelVNe---LdPeILDtNP~L~FhLQQqqLIELIR~GdieeALeFAq~~L 401 (582)
..........|+.++|+...+. ++|. ++..++.+=+. +.+.|+.++|++..+.-+
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~----~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH----NHVLYSNRSAA----YAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHH----HHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC----cHHHHHHHHHH----HHhhccHHHHHHHHHHHH
Confidence 3445667789999999988665 4554 45555544433 345799999987766543
No 74
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=24.16 E-value=2.6e+02 Score=24.04 Aligned_cols=60 Identities=13% Similarity=-0.009 Sum_probs=43.3
Q ss_pred HHHHhcCCHHHHHHHHhc---cCCCccccCcccchhhhHHHHHHHHhcCChhHHHHHHHhhcCcccccCccch
Q 008001 343 KELAGKGMAAEAVEEINA---MDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHPALL 412 (582)
Q Consensus 343 ReAIq~G~IqeAIelVNe---LdPeILDtNP~L~FhLQQqqLIELIR~GdieeALeFAq~~LaPrae~nP~fL 412 (582)
.-....|+.++|+...++ ++|+ ++..++.|-. -+.+.|+.++|++..+.-+. .. .++.+.
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~l~~----~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~ 73 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYN----SPYIYNRRAV----CYYELAKYDLAQKDIETYFS-KV-NATKAK 73 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCC----CSTTHHHHHH----HHHHTTCHHHHHHHHHHHHT-TS-CTTTCC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCC----cHHHHHHHHH----HHHHHhhHHHHHHHHHHHHh-cc-CchhHH
Confidence 456789999999998665 4664 4555655544 35578999999999888777 33 677663
No 75
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=23.15 E-value=81 Score=31.04 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=30.6
Q ss_pred hhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHhC
Q 008001 545 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 582 (582)
Q Consensus 545 e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~~ 582 (582)
++.|-++.| +-.+|.+||..|..+|+|.|..+++||+
T Consensus 216 ~~~v~~l~~-mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCA-AGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 445555555 4889999999999999999999999983
No 76
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=22.81 E-value=1.9e+02 Score=21.27 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHhc---cCCCccccCcc-cchhhhHHHHHHHHhcCChhHHHHHHHhhcCcccccCccch--hh
Q 008001 341 GMKELAGKGMAAEAVEEINA---MDADFFVQNPM-LLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHPALL--KP 414 (582)
Q Consensus 341 ~IReAIq~G~IqeAIelVNe---LdPeILDtNP~-L~FhLQQqqLIELIR~GdieeALeFAq~~LaPrae~nP~fL--~e 414 (582)
.-...+..|+.++|+...++ ++|+ ++. .+|.+=.. +...|+.++|++.-+.-+. ...+++..+ ..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~lg~~----~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV----GKDEAYYLMGNA----YRKLGDWQKALNNYQSAIE-LNPDSPALQARKM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS----THHHHHHHHHHH----HHHHTCHHHHHHHHHHHHH-HCTTSTHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC----cHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHh-cCCCcHHHHHHHH
Confidence 34556789999999988664 5664 344 55554433 3467999999888776543 233455544 55
Q ss_pred HHHHHHH
Q 008001 415 LKETLLA 421 (582)
Q Consensus 415 LErTMAL 421 (582)
+++++..
T Consensus 77 ~~~a~~~ 83 (99)
T 2kc7_A 77 VMDILNF 83 (99)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666554
No 77
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=22.50 E-value=1.3e+02 Score=24.73 Aligned_cols=50 Identities=12% Similarity=-0.186 Sum_probs=28.2
Q ss_pred HHhcCCHHHHHH---HHhccCCCccccCcccchhhhHHHHHHHHhcCChhHHHHHHHhhcC
Q 008001 345 LAGKGMAAEAVE---EINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLG 402 (582)
Q Consensus 345 AIq~G~IqeAIe---lVNeLdPeILDtNP~L~FhLQQqqLIELIR~GdieeALeFAq~~La 402 (582)
++..|++++|.+ .+.. +|..........=.-+...|+.++|+++.+.-+.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp -----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 578899999999 6644 3322222222222334568999999888877655
No 78
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.35 E-value=1.3e+02 Score=24.51 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=30.2
Q ss_pred CCccccChhhHHHHHHHhcCChhHHHHHHHHhcCCHHHHHHHHh
Q 008001 538 SADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 581 (582)
Q Consensus 538 ~~~~~~~e~ail~vmeflalpr~dai~ll~qy~g~~e~viqq~~ 581 (582)
+++.-| +..|-.+++.=--.|...|+-|..-+||+|..|.-||
T Consensus 14 ~pe~~y-~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~ 56 (67)
T 2dna_A 14 APEVRF-SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLK 56 (67)
T ss_dssp CHHHHT-HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ChHHHH-HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 334445 4556555543325566669999999999999998887
No 79
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=21.85 E-value=9.7 Score=26.53 Aligned_cols=13 Identities=69% Similarity=1.365 Sum_probs=10.4
Q ss_pred ccccccccccccc
Q 008001 287 ERNKRKRWRERQD 299 (582)
Q Consensus 287 ~~~kr~Rwrgr~~ 299 (582)
.+|+|.|||.|+.
T Consensus 6 RRnRRRRWR~Rq~ 18 (26)
T 1etf_B 6 RRNRRRRWRERQR 18 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 4689999999854
No 80
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM, iron, trans ION transport, proteobacteria, iron transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica} SCOP: e.62.1.1 PDB: 2j0r_A*
Probab=21.53 E-value=28 Score=35.95 Aligned_cols=91 Identities=21% Similarity=0.165 Sum_probs=52.5
Q ss_pred HhhhhhcccCCCCCccchhhhhcccCCCCCCCCcccccCCCCC---------------ChhhHHHHHHHhccchhhHhHH
Q 008001 72 IHKEFCFHQGVPSPISDLTDRLLLEERDPPATPQESLYEAPPF---------------DEVDIQALAHAVKITRQGAVDS 136 (582)
Q Consensus 72 iH~~~c~~~G~~spisdL~~rlL~~eRDPp~~p~e~~~e~ppF---------------~EvdiQaLahaveltRq~Avds 136 (582)
|||.|+.+.-=-.-..+|.+++..+.+++..+.|...-+.+.- |-++.-.|+...++||+.|+..
T Consensus 136 vhKIyl~~~s~~~a~~~lv~~f~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~~W~~m~D~hqF~~ll~~~~vsR~qa~r~ 215 (345)
T 2j0p_A 136 LHKVYVTEQTDMPAWEALLAQFITTENPELQLEPLSAPEVTEPTATDEAVDAEWRAMTDVHEFFQLLKRNNLTRQQAFRA 215 (345)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHBCSCCCCCCCCC----------CCHHHHHHHHHHCSSGGGHHHHHHHTTCCHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCccccCCCCCCcccCCchhHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHh
Confidence 7899998883223567788888884332222222111111112 2367778888999999987654
Q ss_pred HHhhhccHHHHHHHhhhccccCHHHHHHHHHHHHhhhcc
Q 008001 137 LRFARGDLFQAFQNELCQMRLDVSMLDELVREYCVYRGI 175 (582)
Q Consensus 137 Lr~akGDl~~AfqnEL~rmrln~~lldeLv~eYc~yRGi 175 (582)
+ ..|+ .-+||...|..| ++.+.-.|+
T Consensus 216 ~---~~~~---------a~~v~~~al~~l-L~~aa~~~~ 241 (345)
T 2j0p_A 216 V---GNDL---------AYQVDNSSLTQL-LNIAQQEQN 241 (345)
T ss_dssp S---CTTT---------EEEECTTHHHHH-HHHHHHHCC
T ss_pred C---CHhH---------eeecCHHHHHHH-HHHHHhcCC
Confidence 4 3332 246777777655 455666664
No 81
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=21.39 E-value=31 Score=25.86 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=26.8
Q ss_pred ChhhHHHHHHHhccchhhHhHHHHhhhccHHHHH
Q 008001 115 DEVDIQALAHAVKITRQGAVDSLRFARGDLFQAF 148 (582)
Q Consensus 115 ~EvdiQaLahaveltRq~AvdsLr~akGDl~~Af 148 (582)
++.-|+.|. +.+.+|+.|+.+|..+.||+..|-
T Consensus 4 e~eaI~rL~-~mGF~~~~a~~Al~a~~~n~e~A~ 36 (47)
T 1dv0_A 4 EKEAIERLK-ALGFPESLVIQAYFACEKNENLAA 36 (47)
T ss_dssp CHHHHTTTT-TTTCCHHHHHHHHTTTTSCHHHHH
T ss_pred hHHHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence 344566664 678999999999999999999884
No 82
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=21.18 E-value=1.2e+02 Score=23.22 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=47.3
Q ss_pred HHHhcCCHHHHHHHHh---ccCCCccccCcccchhhhHHHHHHHHhcCChhHHHHHHHhhcCcc-cccCccchhhHHHHH
Q 008001 344 ELAGKGMAAEAVEEIN---AMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPL-AASHPALLKPLKETL 419 (582)
Q Consensus 344 eAIq~G~IqeAIelVN---eLdPeILDtNP~L~FhLQQqqLIELIR~GdieeALeFAq~~LaPr-ae~nP~fL~eLErTM 419 (582)
-....|+.++||..+. +++|+ ++..||.|=+. +...|+.++|++.-+.-+.-. ...+.....+|+..+
T Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~----~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELVETDPD----YVGTYYHLGKL----YERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAK 87 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT----CTHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHH----HHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence 4567899999998754 56776 45566665443 356899999988877655321 234556666777666
Q ss_pred HHhc
Q 008001 420 LALL 423 (582)
Q Consensus 420 ALLA 423 (582)
.-+.
T Consensus 88 ~~~~ 91 (100)
T 3ma5_A 88 LKAE 91 (100)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 6544
No 83
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=20.80 E-value=1.3e+02 Score=24.26 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=42.4
Q ss_pred HHhcCCHHHHHHHHh---ccCCCccccCcccchhhhHHHHHHHHhcCChhHHHHHHHhh--cCcccccCccchhhHHHHH
Q 008001 345 LAGKGMAAEAVEEIN---AMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAH--LGPLAASHPALLKPLKETL 419 (582)
Q Consensus 345 AIq~G~IqeAIelVN---eLdPeILDtNP~L~FhLQQqqLIELIR~GdieeALeFAq~~--LaPrae~nP~fL~eLErTM 419 (582)
..+.|+.++|+.... +++|+ |+..||.|=.. +...|+.++|++.-+.- +.| .+|+...-.+++.
T Consensus 62 ~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~----~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 62 RQSLGLYEQALQSYSYGALMDIN----EPRFPFHAAEC----HLQLGDLDGAESGFYSARALAA---AQPAHEALAARAG 130 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT----CTHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHH---TCGGGHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC----CcHHHHHHHHH----HHHcCCHHHHHHHHHHHHHhCC---CCcchHHHHHHHH
Confidence 457899999987754 57774 67777776544 45689999998876653 334 4454444444443
Q ss_pred H
Q 008001 420 L 420 (582)
Q Consensus 420 A 420 (582)
.
T Consensus 131 ~ 131 (142)
T 2xcb_A 131 A 131 (142)
T ss_dssp H
T ss_pred H
Confidence 3
No 84
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=20.79 E-value=1e+02 Score=30.74 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=36.2
Q ss_pred CCCchHHHHHHHHHHhhh--------hhhhhhcccchhchhhhhhcccccCcc
Q 008001 453 IEEPQLMKILRATLHTHN--------EWFKLQMCKDRFESLLRIDLLKEVYTP 497 (582)
Q Consensus 453 ~~EPKL~~LLKLlLWAQ~--------Ew~KlqmckDrFe~ll~id~LKe~~~p 497 (582)
.+.|.+.+|++++.|.-. +|-|.+--++||-.+| -+..|+..+|
T Consensus 25 ~kDp~~~KlL~v~~W~~knGl~D~mynfs~~Dp~g~Km~r~i-st~P~~a~kp 76 (242)
T 3zed_D 25 VKDAEVFKLLKLMSWTRKNDLTDHMYEWSKEDPDAIKFGRLV-STPPKHQEKP 76 (242)
T ss_pred ccCHHHHHHHHHHHHHhccCHHHHHHHHHhhCccHHHHHHHh-cCCccccCCC
Confidence 478999999999999864 7999999999999998 4556655443
No 85
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=20.41 E-value=13 Score=33.62 Aligned_cols=13 Identities=69% Similarity=1.365 Sum_probs=10.6
Q ss_pred ccccccccccccc
Q 008001 287 ERNKRKRWRERQD 299 (582)
Q Consensus 287 ~~~kr~Rwrgr~~ 299 (582)
.||+|+|||.|+.
T Consensus 37 RRNRRRRWR~RQr 49 (115)
T 2x7l_M 37 RRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHH
Confidence 4789999999943
No 86
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=20.07 E-value=1.6e+02 Score=22.68 Aligned_cols=54 Identities=11% Similarity=-0.097 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCHHHHHHHHh---ccCCCccccCcccchhhhHHHHHHHHhcCChhHHHHHHHhhc
Q 008001 340 LGMKELAGKGMAAEAVEEIN---AMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHL 401 (582)
Q Consensus 340 ~~IReAIq~G~IqeAIelVN---eLdPeILDtNP~L~FhLQQqqLIELIR~GdieeALeFAq~~L 401 (582)
..-......|+.++|+...+ +++|. ++..|+.+=.+ +...|+.++|++..+.-+
T Consensus 14 ~~g~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~l~~~----~~~~~~~~~A~~~~~~al 70 (137)
T 3q49_B 14 EQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALC----YLKMQQPEQALADCRRAL 70 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHH----HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhCcC----cHHHHHHHHHH----HHHhcCHHHHHHHHHHHH
Confidence 34445567788888877654 35664 34444444322 345777777777665543
Done!