Query 008002
Match_columns 582
No_of_seqs 97 out of 124
Neff 2.6
Searched_HMMs 46136
Date Thu Mar 28 18:10:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03109 ETHYLENE-INSENSITIVE3 100.0 9E-149 2E-153 1161.4 34.0 303 33-338 24-334 (599)
2 PF04873 EIN3: Ethylene insens 100.0 1E-115 2E-120 885.4 -0.1 346 49-427 1-354 (354)
3 PF11001 DUF2841: Protein of u 97.1 0.00096 2.1E-08 61.4 5.5 82 177-274 16-103 (126)
4 PF00843 Arena_nucleocap: Aren 47.4 13 0.00028 41.5 2.4 158 97-290 269-485 (533)
5 PHA02767 hypothetical protein; 35.5 29 0.00062 31.5 2.2 26 82-107 43-68 (101)
6 KOG3263 Nucleic acid binding p 32.3 26 0.00057 35.1 1.6 22 102-130 145-166 (196)
7 KOG4215 Hepatocyte nuclear fac 24.8 15 0.00032 40.3 -1.6 24 411-434 40-63 (432)
8 COG2091 Sfp Phosphopantetheiny 23.0 77 0.0017 31.9 3.1 40 90-130 41-80 (223)
9 PF07440 Caerin_1: Caerin 1 pr 22.8 38 0.00083 24.1 0.6 15 249-263 3-17 (24)
10 PF11831 Myb_Cef: pre-mRNA spl 19.0 3.2E+02 0.007 27.6 6.4 93 18-111 75-175 (231)
No 1
>PLN03109 ETHYLENE-INSENSITIVE3-like3 protein; Provisional
Probab=100.00 E-value=8.6e-149 Score=1161.38 Aligned_cols=303 Identities=63% Similarity=1.096 Sum_probs=284.3
Q ss_pred CCcCCCCCCccccCCHHHHHHhhhhhhHHHHHHhhhccCCccch--hhhccccHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 008002 33 PEATVEDDYTDEEMDVDELERRMWKDKMRLKRLKEQSRGKEGID--MAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVC 110 (582)
Q Consensus 33 ~~~~~e~~~sdeei~~~eLe~rmWkDr~~lkrlke~~~~~~~~~--~~k~~~~~e~~rrKkMsRAQdgiLkyMlKmMEvC 110 (582)
.++++|+|+||||||+||||||||||||+||||||++|..+..+ ..|+++++||||||||+|||||||||||||||||
T Consensus 24 c~~~~~~~~sdeei~~~el~rrmwkd~~~l~rlke~~~~~~~~~~e~~~~~~~~~~arrkkm~raqdgilkymlk~me~c 103 (599)
T PLN03109 24 CDNLTENDVSDEEIEAEDLERRMWKDRIKLKRIKERQKKLQQAALEKSKPKKISDQARRKKMSRAQDGILKYMLKLMEVC 103 (599)
T ss_pred cCCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999988755443 6788999999999999999999999999999999
Q ss_pred hhccceeeeccCCCccccCCCchhHHHhhhhccccccchhhhhhhcccCCCCCCCCCCCCCCCCcchhhhcchhhhhhHH
Q 008002 111 KAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQELQDTTLGSLL 190 (582)
Q Consensus 111 ~aqGFVYGiipekGkPvsGaSdnlR~WWKekV~FdrngPaAiaky~~~~~~~~~~~~~~~~~~~~h~L~~LqDtTLgsll 190 (582)
|||||||||||||||||||||||||+|||||||||||||||||||++||++++.++.... +++|+|+|||||||||||
T Consensus 104 ~a~gfvygiipekgkpvsg~sd~lr~wwk~~v~fd~~gp~ai~ky~~~~~~~~~~~~~~~--~~~~~l~~lqd~tLgsll 181 (599)
T PLN03109 104 KARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMGEAESSGN--NSQHSLQDLQDATLGSLL 181 (599)
T ss_pred hhcceeEEeccCCCCCCCCCchHHHHHHHHhcccccccHHHHHHhhhhcccccccccCCc--ccHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888765553 899999999999999999
Q ss_pred HHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCchhhhhhhhhhhhhhhhccCcCHHHHHHHH
Q 008002 191 SALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLV 270 (582)
Q Consensus 191 SaLmqhC~PPQrr~pLekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkphdLkKawKv~vLtavIKHmsPd~~kir~lV 270 (582)
|||||||+|||||||||||+||||||||+|+||++||+|++++ |||||||||||||||+|||||||||||||+|||+||
T Consensus 182 salmqhC~Ppqr~~plekg~~PPWWPtg~E~WW~~~g~~~~~~-pPykkphdLkK~wKv~vl~avikhmsPd~~kir~~v 260 (599)
T PLN03109 182 SSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLPKGQS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDFDKIRRHV 260 (599)
T ss_pred HHHHhhcCChhhcCCCCCCCCCCCCCCCCcchhhhcCCCCCCC-CCCCCchhhhhHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999865 999999999999999999999999999999999999
Q ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHHHhhCCCCCC------CcCCCCCCCCccccCCCCccccCCCCCCCc
Q 008002 271 RQSKCLQDKMTAKESATWLAIINQEEALARELYPESCT------VLSSSAGSGSLVINDCNEYDVEGAEDEPNF 338 (582)
Q Consensus 271 rqSkcLQdKmTakEs~~W~~vl~~Ee~l~~~l~p~~~~------~~s~~~~~~~~~~~~~~eYDVeg~e~~~~~ 338 (582)
|||||||||||||||+||++||+|||+|++++..++.. |.++.++....++|+++||||||+||.+.+
T Consensus 261 r~Sk~lqdkmtakEs~~W~~vl~~Ee~~~~~~s~DNGtS~ITe~P~g~~~~rk~~~~SSdsdYDVDg~eD~~gS 334 (599)
T PLN03109 261 RQSKCLQDKMTAKESLIWLGVLNREESLIRQPSSDNGTSGITETPRGGHEDRNKDAISSDSDYDVDGLEDAPGS 334 (599)
T ss_pred HhchhHHhhhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCCCccccCCCCCcCCCcccccccccCCCCC
Confidence 99999999999999999999999999999998877653 344555666778999999999999998865
No 2
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=100.00 E-value=1e-115 Score=885.38 Aligned_cols=346 Identities=45% Similarity=0.780 Sum_probs=95.9
Q ss_pred HHHHHhhhhhhHHHHHHhhhccC----Ccc-chhhhccccHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccceeeeccCC
Q 008002 49 DELERRMWKDKMRLKRLKEQSRG----KEG-IDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEK 123 (582)
Q Consensus 49 ~eLe~rmWkDr~~lkrlke~~~~----~~~-~~~~k~~~~~e~~rrKkMsRAQdgiLkyMlKmMEvC~aqGFVYGiipek 123 (582)
|||++|||||+|+|+||++++.. ++. +...|..+..||+|||+|+||||||||||+||||||||+||||||||++
T Consensus 1 EElkk~~~~dq~~~r~~~~r~~~~~~~~e~a~~~~k~~~~~eq~~kr~~s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~ 80 (354)
T PF04873_consen 1 EELKKRMWKDQMPVRRLHSRKLQLMEDQEPATGAKKSNKPNEQIRKRKMSRAQDGILKYMFPEMELCNAPGFVYTIISSS 80 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhhhccChhhcchHHHHhhcccccccccccccccccCCcHHHHHhhhhhhhhhHHHHhhccccccccCceeeecCCCCC
Confidence 79999999999999999998554 222 2333567889999999999999999999999999999999999999999
Q ss_pred CccccCCCchhHHHhhhhccccccchhhhhhhcccCCCCCCCCCCCC-CCCCcchhhhcchhhhhhHHHHhhhcCCCCcc
Q 008002 124 GKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINA-IGPTPHTLQELQDTTLGSLLSALMQHCDPPQR 202 (582)
Q Consensus 124 GkPvsGaSdnlR~WWKekV~FdrngPaAiaky~~~~~~~~~~~~~~~-~~~~~h~L~~LqDtTLgsllSaLmqhC~PPQr 202 (582)
||||+|+|||||+||||+|+||+|||+||+||++++.+.+...++.. .....|+|++|||||||||||||||||+||||
T Consensus 81 ~k~~~~~s~slr~wwke~v~~~~ng~~~vs~~~~~~l~ls~~~~lq~~rs~~~~sl~~vpDTd~gSLL~a~~q~~~~p~~ 160 (354)
T PF04873_consen 81 GKPVEGVSPSLRAWWKEEVEFDRNGPIQVSKYDPKDLVLSGERGLQTERSSESTSLSLVPDTDLGSLLSALMQHCTPPQR 160 (354)
T ss_dssp -------------------------------------------------------STTS-HHHHHHHHHHHSSSSSS-TT
T ss_pred CCccCCcCCcccchhhhhhhcCcccccccCCcchhhhcccCCCCcccccccccccccccCCcccccccccccccCCCCcc
Confidence 99999999999999999999999999999999999999887766643 57899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCchhhhhhhhhhhhhhhhccCcCHHHHHHHHhhhcccccchhH
Q 008002 203 RFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTA 282 (582)
Q Consensus 203 r~pLekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkphdLkKawKv~vLtavIKHmsPd~~kir~lVrqSkcLQdKmTa 282 (582)
||||++|++|||||||+|.||+++|+++++||||||+||||||||||+||+||||||+|+|.+||++|++|+|||+|||+
T Consensus 161 ~~~~~~~~~~Pwwp~gkE~~~~~~g~s~~~~~~~~k~p~~lkk~~k~~~L~~~ikH~~~~~~~me~seldtq~LQnK~Sk 240 (354)
T PF04873_consen 161 CFPLEKGIEPPWWPTGKELWWGELGCSKDTGPPPYKKPHDLKKAWKVSVLRAEIKHMSPTFDEMEESELDTQYLQNKMSK 240 (354)
T ss_dssp S--TTT--HHHH---S--HHHHHHT--TT--------GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--S
T ss_pred CcccccccCCCCCCCCccccccccCCcCCCCCCCccChHHhhhcccccchhhhhccCCcchHHHHHhhhhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCcCCCCCCCCccccCCCCccccCCCCCCCccccccCCcCcCCccchhhhhccCC
Q 008002 283 KESATWLAIINQEEALARELYPESCTVLSSSAGSGSLVINDCNEYDVEGAEDEPNFDVQECKPQNLISSSLGMERMRERL 362 (582)
Q Consensus 283 kEs~~W~~vl~~Ee~l~~~l~p~~~~~~s~~~~~~~~~~~~~~eYDVeg~e~~~~~~~~~~kp~~~~~~n~~~~~~~~~~ 362 (582)
+||.||+++++|||++++.++++ +.|...++..++++...+|||+|.++.....++.....
T Consensus 241 rqSfa~~s~~~qEEk~~~~v~a~---s~S~~kqsp~vt~e~~qeee~qG~~Es~i~~vq~~~~~---------------- 301 (354)
T PF04873_consen 241 RQSFAWFSNPGQEEKECRTVCAH---SRSLRKQSPKVTLECEQEEEVQGKEESKIKHVQAVSAT---------------- 301 (354)
T ss_dssp HHHHHHHHHHTTTTT-S---------------------------------------------------------------
T ss_pred hhhhhhhcccCchhhhccccCCC---cchhhccCCCccccccchhhccCccccccccccccccc----------------
Confidence 99999999999999999999998 23555566777778888999999887665544332211
Q ss_pred CCCCCCCCcccccccccccccccCCCCCCCcccc--cccccccCCCCCCCCCCCCCCCCCccCCccc
Q 008002 363 PNQQPPYAIKGEVVSNFDFVRKRKPSNDLSMKMD--QHIYTCEYLQCPYSDPRLGYRDRTSRDNHQL 427 (582)
Q Consensus 363 ~~~~~~~~~k~e~~~~~~f~~KRk~~~~~~~~~~--~~~ytc~~~qCP~s~~~~GF~Dr~sR~nHq~ 427 (582)
.+..++.||+...+...... ...|+|+++|||+++..+||.|++.|++|+|
T Consensus 302 --------------~~~~~v~Qrkrkpgd~a~~s~~~~srlCqssq~~gsE~eli~~Dkn~isqn~y 354 (354)
T PF04873_consen 302 --------------NGFPVVCQRKRKPGDYAKCSIKGVSRLCQSSQCPGSETELIFADKNGISQNPY 354 (354)
T ss_dssp -------------------------------------------------------------------
T ss_pred --------------cCCccccccCCCCCccccccccccccCCccccCCCcccccCcCCccccccCCC
Confidence 13445566662223333333 3489999999999999999999999999997
No 3
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast.
Probab=97.07 E-value=0.00096 Score=61.43 Aligned_cols=82 Identities=24% Similarity=0.634 Sum_probs=65.7
Q ss_pred hhhhcchhhhhhHHHHhhhcCCC-CccCCCCCCC--CCCCCCCCCCCccccccCCCCCCCCCCCCCCchhhhhhhhhhhh
Q 008002 177 TLQELQDTTLGSLLSALMQHCDP-PQRRFPLEKG--VSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLT 253 (582)
Q Consensus 177 ~L~~LqDtTLgsllSaLmqhC~P-PQrr~pLekG--~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkphdLkKawKv~vLt 253 (582)
.+..||-+.--.+..|-..-=.| -|.+||-.+| ..|+|||.+ .++|-|.-|+|.-.|.+|+
T Consensus 16 ~F~~lqQ~~Ck~IAKawIK~IEPkKQ~~~PY~~g~~tkP~WWP~~----------------V~HkEPDHL~K~eRi~LLi 79 (126)
T PF11001_consen 16 AFKALQQVNCKQIAKAWIKVIEPKKQAKYPYNGGDKTKPPWWPED----------------VRHKEPDHLKKPERIRLLI 79 (126)
T ss_pred HHHHcChhHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC----------------CCcCCCCccCHHHHHHHHH
Confidence 35567777777777777766566 4899999999 599999954 6899999999999999999
Q ss_pred hhhhccCc---CHHHHHHHHhhhc
Q 008002 254 AVIKHMSP---DIAKIRKLVRQSK 274 (582)
Q Consensus 254 avIKHmsP---d~~kir~lVrqSk 274 (582)
.++..+.| ..++++.+.+.+.
T Consensus 80 hIlr~l~~~~~t~~kL~~a~~~~~ 103 (126)
T PF11001_consen 80 HILRNLRPHGITVDKLEEATQDVR 103 (126)
T ss_pred HHHHhccccCCcHHHHHHHHHHHH
Confidence 99998877 6677777766554
No 4
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=47.43 E-value=13 Score=41.55 Aligned_cols=158 Identities=27% Similarity=0.438 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHHhhccceeeeccC----------------CCccccCCCchh--HHHhhhhccccccchhhhhhhccc
Q 008002 97 DGILKYMLKMMEVCKAQGFVYGIIPE----------------KGKPVTGASDNL--REWWKDKVRFDRNGPAAIAKYQAD 158 (582)
Q Consensus 97 dgiLkyMlKmMEvC~aqGFVYGiipe----------------kGkPvsGaSdnl--R~WWKekV~FdrngPaAiaky~~~ 158 (582)
+.|||-+|+ |=++-|..-+..|- .|=|-.||--.| |+|=---|-|+...+..-
T Consensus 269 ~~iiK~~L~---vK~~e~MFv~~~pG~RNPYENlLYKlCLSGeGWPYI~SRSqI~GRAWDNT~VDl~~~p~~~~------ 339 (533)
T PF00843_consen 269 STIIKAVLK---VKRREGMFVSETPGQRNPYENLLYKLCLSGEGWPYIGSRSQIKGRAWDNTTVDLTGKPDSGP------ 339 (533)
T ss_dssp HHHHHHHHH---HHHHHT----SSSSS--HHHHHHHHHHH-SSB-TTTSBGTT--S-HHHHEEEE---------------
T ss_pred HHHHHHHHH---HHHhcCcccCCCCCCCCcHHHHHHHHhcCCCCCCceeecccccccccCCcEEeCCCCCCCCC------
Confidence 467777664 44555554455553 566777776666 889888888888765111
Q ss_pred CCCCCCCCCCCCCCCCcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCC----
Q 008002 159 NSVPGKNEGINAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGA---- 234 (582)
Q Consensus 159 ~~~~~~~~~~~~~~~~~h~L~~LqDtTLgsllSaLmqhC~PPQrr~pLekG~~PPWWPtG~E~WW~~~g~~~~~gp---- 234 (582)
..|.. +...+.+..|.+.|-.. |...|+.=+|-- ..|=.=.|-|.|+.-
T Consensus 340 -~~p~~----ng~~~~l~~Lt~~qe~~----lk~am~~Ldp~~------------------ttWiDIEG~p~DPVElAiy 392 (533)
T PF00843_consen 340 -PPPVR----NGGNPRLSGLTESQEMQ----LKDAMEKLDPNA------------------TTWIDIEGPPNDPVELAIY 392 (533)
T ss_dssp -----------------SSS-HHHHHH----HHHHHCCS-TTS-------------------EEEEEESETTSESEEEEE
T ss_pred -CCccC----CCCCCCCCCCCHHHHHH----HHHHHHhCCCCC------------------CeeEecCCCCCCCeEEEEe
Confidence 11222 11223334555555544 444555555532 234444455555421
Q ss_pred --------CCCCCCchhhhhh-----------------hhhhhhhhhhccCcCH-------HHHHHHHh-----hhcccc
Q 008002 235 --------PPYKKPHDLKKAW-----------------KVGVLTAVIKHMSPDI-------AKIRKLVR-----QSKCLQ 277 (582)
Q Consensus 235 --------PPYkkphdLkKaw-----------------Kv~vLtavIKHmsPd~-------~kir~lVr-----qSkcLQ 277 (582)
-=||+|||.|-.= .-|+++|||+|+-++. +-||+|.- .-|-+-
T Consensus 393 QP~sg~YiHcyR~P~D~K~FK~~SKysHGillkDl~~aqPGL~S~vi~~LP~~MVlT~QGsDDIrkLld~hGRrDiKlvD 472 (533)
T PF00843_consen 393 QPSSGNYIHCYREPHDEKQFKNQSKYSHGILLKDLENAQPGLTSAVIELLPKNMVLTCQGSDDIRKLLDMHGRRDIKLVD 472 (533)
T ss_dssp ETTTTEEEEEE---S-HHHHHHHHHHTT-B-GGGCTTB-TTHHHHHHHHS-TT-EEEESSHHHHHHHHHCTT-TTSEEEE
T ss_pred ccCCCcEEEEecCCcchhhhcccccccccccHHHHhhhccchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCCcceEEE
Confidence 1399999987431 2479999999999886 88999873 335555
Q ss_pred cchhHHHHHHHHH
Q 008002 278 DKMTAKESATWLA 290 (582)
Q Consensus 278 dKmTakEs~~W~~ 290 (582)
=|||+.+|.....
T Consensus 473 V~lt~eqaR~FEd 485 (533)
T PF00843_consen 473 VKLTSEQARKFED 485 (533)
T ss_dssp ----HHHHTTTHH
T ss_pred eecCHHHHHHHHH
Confidence 6899998876543
No 5
>PHA02767 hypothetical protein; Provisional
Probab=35.51 E-value=29 Score=31.46 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=21.8
Q ss_pred ccHHHHHHhhhhhhhhhHHHHHHHHH
Q 008002 82 QSQEQARRKKMSRAQDGILKYMLKMM 107 (582)
Q Consensus 82 ~~~e~~rrKkMsRAQdgiLkyMlKmM 107 (582)
|.+=-.|.|.|..|-|.||||+||..
T Consensus 43 QIk~~~k~~~~EK~~~~I~kYl~~TF 68 (101)
T PHA02767 43 QIKINMKKKEYEKAGMSILKYLVHTF 68 (101)
T ss_pred EEEehhhHHHHHHHHHHHHHHHHHHc
Confidence 44456889999999999999999864
No 6
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=32.30 E-value=26 Score=35.08 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhccceeeeccCCCccccCC
Q 008002 102 YMLKMMEVCKAQGFVYGIIPEKGKPVTGA 130 (582)
Q Consensus 102 yMlKmMEvC~aqGFVYGiipekGkPvsGa 130 (582)
-|+|||. |+ |+=--|||+|.|+
T Consensus 145 EMmk~MG------f~-gFDtTkgkkv~g~ 166 (196)
T KOG3263|consen 145 EMMKIMG------FS-GFDTTKGKKVGGS 166 (196)
T ss_pred HHHHHhC------cC-cccCCCCccccCc
Confidence 5888885 55 6678999999886
No 7
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=24.77 E-value=15 Score=40.30 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=21.5
Q ss_pred CCCCCCCCCCccCCcccccccCCC
Q 008002 411 DPRLGYRDRTSRDNHQLTCPYKSG 434 (582)
Q Consensus 411 ~~~~GF~Dr~sR~nHq~~c~yr~~ 434 (582)
+.+-||--|+.|.||+|+|.|...
T Consensus 40 dGCKGFFRRSVrk~~~YtCRF~k~ 63 (432)
T KOG4215|consen 40 DGCKGFFRRSVRKNHQYTCRFNKQ 63 (432)
T ss_pred CcchHHHHHHHHhcceeeeecccc
Confidence 568999999999999999999843
No 8
>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism]
Probab=23.03 E-value=77 Score=31.95 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=31.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhccceeeeccCCCccccCC
Q 008002 90 KKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGA 130 (582)
Q Consensus 90 KkMsRAQdgiLkyMlKmMEvC~aqGFVYGiipekGkPvsGa 130 (582)
+.|-.|.+++|++.|+.|.-|..+.-=|+ +-+.|||.=-.
T Consensus 41 r~r~l~~~~~lr~lls~~l~~~~~~~~~~-~~~~GKP~~~~ 80 (223)
T COG2091 41 RERFLASRLLLRALLSIALGLDPELLQIS-YGERGKPYLPD 80 (223)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccceee-ECCCCCccccC
Confidence 67889999999999999999987763333 23899996433
No 9
>PF07440 Caerin_1: Caerin 1 protein; InterPro: IPR010000 This family consists of several caerin 1 proteins from Litoria species, Australian tree frogs. The caerin 1 peptides are among the most powerful of the broad-spectrum antibiotic amphibian peptides []. These peptides are excreted from amphibian skin, and can interact with and disrupt bacterial membranes, leading to the permeabilisation of the cell membrane. Caerin 1.1 forms a helix-bend-helix sturcture, where both helices are required for activity, as well as the bend region for flexibility.; GO: 0005576 extracellular region
Probab=22.77 E-value=38 Score=24.14 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=12.8
Q ss_pred hhhhhhhhhccCcCH
Q 008002 249 VGVLTAVIKHMSPDI 263 (582)
Q Consensus 249 v~vLtavIKHmsPd~ 263 (582)
.+||.+|.||+.|..
T Consensus 3 ~~vlgsvakhvlphv 17 (24)
T PF07440_consen 3 FSVLGSVAKHVLPHV 17 (24)
T ss_pred HHHHHHHHHHhcccc
Confidence 579999999999865
No 10
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=18.98 E-value=3.2e+02 Score=27.57 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=44.9
Q ss_pred CCCcCCccccCCCCCCCcCCCCCCccccCCHHHHHHhhhhhhHHHHHHhhhccCCcc-chhhhccccHHHHHH-------
Q 008002 18 SAPLGDADMAVQPSEPEATVEDDYTDEEMDVDELERRMWKDKMRLKRLKEQSRGKEG-IDMAKQRQSQEQARR------- 89 (582)
Q Consensus 18 s~~~geg~~~~~~~~~~~~~e~~~sdeei~~~eLe~rmWkDr~~lkrlke~~~~~~~-~~~~k~~~~~e~~rr------- 89 (582)
|+|--+-++..|+.+.+.. ++...+-+.|..|.++|.=+-+-.-++.+-+++.+.- -+.+.+.......-|
T Consensus 75 P~P~Nd~EI~lPe~e~~e~-~~~~~~~eeDaad~d~r~~~~~~~~e~~e~~rRSqvvQR~LPRP~~v~~~~L~~~~~~~~ 153 (231)
T PF11831_consen 75 PKPKNDYEIVLPEEEEEED-EEAEEEMEEDAADRDARERAEREEEEEKELKRRSQVVQRGLPRPSEVNESILRPAENPAL 153 (231)
T ss_pred CCCCCeeeeecCCcccccc-cccccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCCcccHHHHHhhcccCC
Confidence 4554455555555443321 1111233668888888865433333322222222110 001111111122222
Q ss_pred hhhhhhhhhHHHHHHHHHHHHh
Q 008002 90 KKMSRAQDGILKYMLKMMEVCK 111 (582)
Q Consensus 90 KkMsRAQdgiLkyMlKmMEvC~ 111 (582)
....+|++=|.+-|+.||.-=.
T Consensus 154 ~~~~~ae~lI~~Em~~Ll~~D~ 175 (231)
T PF11831_consen 154 TELDEAEELIKQEMATLLKHDA 175 (231)
T ss_pred cchHHHHHHHHHHHHHHHHhHh
Confidence 3456889999999999997543
Done!