Query 008002
Match_columns 582
No_of_seqs 97 out of 124
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 15:44:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wij_A Ethylene-insensitive3-l 100.0 1.2E-81 4.1E-86 566.0 1.6 138 168-306 2-139 (140)
2 3q7c_A Nucleoprotein; deddh ex 57.9 4.7 0.00016 39.9 2.4 70 221-290 60-170 (243)
3 3mwp_A Nucleoprotein; structur 41.9 11 0.00039 40.7 2.4 160 97-290 284-504 (577)
4 3h3g_B Parathyroid hormone-rel 33.0 18 0.0006 24.9 1.4 13 47-59 3-15 (24)
5 1g5h_A Mitochondrial DNA polym 16.8 28 0.00097 36.2 -0.1 40 103-143 24-78 (454)
6 2hg7_A Phage-like element PBSX 14.6 53 0.0018 29.2 1.1 53 132-193 44-96 (110)
7 3e8v_A Possible transglutamina 11.9 75 0.0026 26.9 1.2 13 119-131 7-19 (82)
8 2d42_A Non-toxic crystal prote 11.9 90 0.0031 31.2 1.9 12 107-118 14-25 (249)
9 1zei_A Insulin, B28Asp-X-MCR; 10.8 57 0.0019 25.5 0.1 13 106-118 15-27 (53)
10 2l58_A Activator of apoptosis 10.5 82 0.0028 22.9 0.8 11 49-59 21-32 (33)
No 1
>1wij_A Ethylene-insensitive3-like 3 protein; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.140.5.1
Probab=100.00 E-value=1.2e-81 Score=565.99 Aligned_cols=138 Identities=72% Similarity=1.246 Sum_probs=126.5
Q ss_pred CCCCCCCcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCchhhhhh
Q 008002 168 INAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAW 247 (582)
Q Consensus 168 ~~~~~~~~h~L~~LqDtTLgsllSaLmqhC~PPQrr~pLekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkphdLkKaw 247 (582)
+++.++++|+|+||||||||||||||||||+|||||||||||+||||||||+|+||+++|+|++|+ |||||||||||||
T Consensus 2 ~~~~~~~~h~L~~Lqd~TLgsllsaLmqhC~PPQR~~Plekg~~PPWWPtG~E~WW~~lGl~~~~~-PPYkkPhdLkKaw 80 (140)
T 1wij_A 2 SSGSSGSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQS-PPYRKPHDLKKMW 80 (140)
T ss_dssp ------CCCCSTTSCHHHHHHHHHHHSSSSSSCTTSCCTTTCCHHHHCCCSCCHHHHHHTCCTTCC-CCCCCGGGCCHHH
T ss_pred CccccccHHHHHHHHHHhHHHHHHHHHhhCCCchhcCCCCCCCCcCCCCCCCchhHHhcCCCCCCC-CCCCCchhhhHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred hhhhhhhhhhccCcCHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHHhhCCCC
Q 008002 248 KVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPES 306 (582)
Q Consensus 248 Kv~vLtavIKHmsPd~~kir~lVrqSkcLQdKmTakEs~~W~~vl~~Ee~l~~~l~p~~ 306 (582)
||+|||||||||||||+|||+|||||||||||||||||+||++||||||+++++++|++
T Consensus 81 KV~VLtAVIKHmsPd~~kir~lVrqSk~lqdKmTakEs~~W~~vl~~Ee~~~~~~~p~~ 139 (140)
T 1wij_A 81 KVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQSGPSS 139 (140)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTTCCSHHHHHHHHHHTTTTTCSCC-----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999975
No 2
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=57.91 E-value=4.7 Score=39.87 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=49.2
Q ss_pred ccccccCCCCCCCC------------CCCCCCchhhhhh-----------------hhhhhhhhhhccCcCH-------H
Q 008002 221 EWWPQLGLPKDQGA------------PPYKKPHDLKKAW-----------------KVGVLTAVIKHMSPDI-------A 264 (582)
Q Consensus 221 ~WW~~~g~~~~~gp------------PPYkkphdLkKaw-----------------Kv~vLtavIKHmsPd~-------~ 264 (582)
.|=.=.|-|.|++- -=||+|||.|-.= .-|+++|||+|+-++. +
T Consensus 60 tWiDIEG~p~DPVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aqPGL~S~vi~~LP~nMVlT~QGsD 139 (243)
T 3q7c_A 60 TWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQGSD 139 (243)
T ss_dssp CEEEEESCTTSCSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCTTHHHHHHHHSCTTCEEEESSHH
T ss_pred eEEecCCCCCCCeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeChH
Confidence 45555566666531 1399999987431 2379999999999986 8
Q ss_pred HHHHHHhh-----hcccccchhHHHHHHHHH
Q 008002 265 KIRKLVRQ-----SKCLQDKMTAKESATWLA 290 (582)
Q Consensus 265 kir~lVrq-----SkcLQdKmTakEs~~W~~ 290 (582)
-||+|.-. -|-+-=|||+.+|.....
T Consensus 140 DIrkLld~hGRrDiKlIDV~lt~eqaR~FEd 170 (243)
T 3q7c_A 140 DIRKLLESQGRKDIKLIDIALSKTDSRKYEN 170 (243)
T ss_dssp HHHHHHHHTTCTTSEEEECCCCHHHHTTTHH
T ss_pred HHHHHHHhcCCccceEEEeecCHHHHHHHHH
Confidence 89999843 355556899998876643
No 3
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=41.89 E-value=11 Score=40.69 Aligned_cols=160 Identities=28% Similarity=0.416 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHhhccceeeecc----------------CCCccccCCCchh--HHHhhhhccccccchhhhhhhccc
Q 008002 97 DGILKYMLKMMEVCKAQGFVYGIIP----------------EKGKPVTGASDNL--REWWKDKVRFDRNGPAAIAKYQAD 158 (582)
Q Consensus 97 dgiLkyMlKmMEvC~aqGFVYGiip----------------ekGkPvsGaSdnl--R~WWKekV~FdrngPaAiaky~~~ 158 (582)
++|||-+|+ |=++-|-.-.-.| -.|=|-.||--.| |+|=---|-|+...+..-
T Consensus 284 ~~iiK~~L~---vK~~e~MFVs~~PG~RNPYENlLYKlCLSGeGWPYI~SRsqI~GRaWdNT~vdl~~~~~~~~------ 354 (577)
T 3mwp_A 284 DGILKSILK---VKKALGMFISDTPGERNPYENILYKICLSGDGWPYIASRTSITGRAWENTVVDLESDGKPQK------ 354 (577)
T ss_dssp HHHHHHHHH---HHHHHTCCCCSCCSSCCHHHHHHHHHHHCSSBCTTTSBCTTCCSCHHHHEEECC--------------
T ss_pred HHHHHHHHH---HHHhcCceecCCCCCCChHHHHHHHHhhCCCCCcceeeccccccccccCceEecCCCCCCCC------
Confidence 468887765 4455554434444 3567777776666 889888888887763221
Q ss_pred CCCCCCCCCCC--CCCCCcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCC--
Q 008002 159 NSVPGKNEGIN--AIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGA-- 234 (582)
Q Consensus 159 ~~~~~~~~~~~--~~~~~~h~L~~LqDtTLgsllSaLmqhC~PPQrr~pLekG~~PPWWPtG~E~WW~~~g~~~~~gp-- 234 (582)
.|..+++-. ...+ ...|.+.|-. +|...|+.-+|-- ..|=.-.|-|.|+.-
T Consensus 355 --~p~rnG~~~~~~~~~-l~~L~~~qe~----~~k~~~~~ldp~~------------------ttWiDIEG~p~DPVE~A 409 (577)
T 3mwp_A 355 --ADSNNSSKSLQSAGF-TAGLTYSQLM----TLKDAMLQLDPNA------------------KTWMDIEGRPEDPVEIA 409 (577)
T ss_dssp --------------------CCCHHHHH----HHHHHGGGSCTTS------------------CEEEEEESCTTSCSEEE
T ss_pred --CCccCcccccccCCc-ccCCCHHHHH----HHHHHHHhCCCCC------------------CeEEecCCCCCCCeEEE
Confidence 233333211 1111 3444444443 4455566656532 234445566655431
Q ss_pred ----------CCCCCCchhhhhh-----------------hhhhhhhhhhccCcCH-------HHHHHHHhh-----hcc
Q 008002 235 ----------PPYKKPHDLKKAW-----------------KVGVLTAVIKHMSPDI-------AKIRKLVRQ-----SKC 275 (582)
Q Consensus 235 ----------PPYkkphdLkKaw-----------------Kv~vLtavIKHmsPd~-------~kir~lVrq-----Skc 275 (582)
-=||+|||.|-.= .-|+++|||+|+-++. +-||+|.-. -|-
T Consensus 410 iyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqPGL~S~vi~~LP~~mV~T~QGsdDI~kLld~hGR~DiK~ 489 (577)
T 3mwp_A 410 LYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKL 489 (577)
T ss_dssp EEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCTTHHHHHHHHSCTTCEEEESSHHHHHHHHHHTTCTTCEE
T ss_pred EeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCccceE
Confidence 1399999987431 2378999999999886 889998843 355
Q ss_pred cccchhHHHHHHHHH
Q 008002 276 LQDKMTAKESATWLA 290 (582)
Q Consensus 276 LQdKmTakEs~~W~~ 290 (582)
+-=|||+.+|.....
T Consensus 490 iDV~lt~eqaR~fEd 504 (577)
T 3mwp_A 490 IDIALSKTDSRKYEN 504 (577)
T ss_dssp EECCCCHHHHTTTHH
T ss_pred EEeecCHHHHHHHHH
Confidence 566899998876643
No 4
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=32.96 E-value=18 Score=24.94 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=10.3
Q ss_pred CHHHHHHhhhhhh
Q 008002 47 DVDELERRMWKDK 59 (582)
Q Consensus 47 ~~~eLe~rmWkDr 59 (582)
.+.||+||||-..
T Consensus 3 s~Q~~rRr~wL~~ 15 (24)
T 3h3g_B 3 SIQDLRRRFFLHH 15 (26)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4789999999644
No 5
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=16.82 E-value=28 Score=36.15 Aligned_cols=40 Identities=23% Similarity=0.637 Sum_probs=26.8
Q ss_pred HHHHHHHHhhccceee---eccCCCccccCCC-----------chhHH-Hhhhhcc
Q 008002 103 MLKMMEVCKAQGFVYG---IIPEKGKPVTGAS-----------DNLRE-WWKDKVR 143 (582)
Q Consensus 103 MlKmMEvC~aqGFVYG---iipekGkPvsGaS-----------dnlR~-WWKekV~ 143 (582)
|-|+++.|+.+|||+. |-|-+ -+|+|.- .||.. ||++.+.
T Consensus 24 ~~~~~~l~krrgf~~~s~eiy~g~-~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~ 78 (454)
T 1g5h_A 24 REALVDLCRRRHFLSGTPQQLSTA-ALLSGCHARFGPLGVELRKNLASQWWSSMVV 78 (454)
T ss_dssp -CHHHHHHHHTTSBCCCGGGGSHH-HHHHCCSCCBCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCccccchhcccC-CCCCcceeeeCchHHHHHHHHHHHHHHHHhh
Confidence 6789999999999763 22211 3677755 47877 8887554
No 6
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=14.65 E-value=53 Score=29.21 Aligned_cols=53 Identities=23% Similarity=0.420 Sum_probs=11.2
Q ss_pred chhHHHhhhhccccccchhhhhhhcccCCCCCCCCCCCCCCCCcchhhhcchhhhhhHHHHh
Q 008002 132 DNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQELQDTTLGSLLSAL 193 (582)
Q Consensus 132 dnlR~WWKekV~FdrngPaAiaky~~~~~~~~~~~~~~~~~~~~h~L~~LqDtTLgsllSaL 193 (582)
.-|++||++-..=-+--|---..|.|.. .+..--.-.-|.+ ++.|||+=||+|
T Consensus 44 ~eL~~wwee~q~np~yepP~q~~~laqe--------ls~eklarkqlee-ln~~Lg~Els~i 96 (110)
T 2hg7_A 44 AELETWWEELQKNPPYEPPDQVELLAQE--------LSQEKLARKQLEE-LNKTLGNELSDI 96 (110)
T ss_dssp HHHHHHHHHHHHSCCCC---------------------------------------------
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHH--------HHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4699999986543333333222333311 1111111122444 456899988876
No 7
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=11.94 E-value=75 Score=26.88 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=10.9
Q ss_pred eccCCCccccCCC
Q 008002 119 IIPEKGKPVTGAS 131 (582)
Q Consensus 119 iipekGkPvsGaS 131 (582)
|+.++||||+||.
T Consensus 7 V~d~~GkPV~gA~ 19 (82)
T 3e8v_A 7 VTDAEGQPVADAT 19 (82)
T ss_dssp EECTTSCBCTTCE
T ss_pred EEcCCCCCCCCCE
Confidence 6778999999984
No 8
>2d42_A Non-toxic crystal protein; parasporin, bacterial toxin, beta-pore-forming toxin, parasporal inclusion, hinge-bending motion; 2.07A {Bacillus thuringiensis}
Probab=11.85 E-value=90 Score=31.17 Aligned_cols=12 Identities=25% Similarity=0.750 Sum_probs=6.2
Q ss_pred HHHHhhccceee
Q 008002 107 MEVCKAQGFVYG 118 (582)
Q Consensus 107 MEvC~aqGFVYG 118 (582)
||+|+|+|+-||
T Consensus 14 ~~~~~~~~~ty~ 25 (249)
T 2d42_A 14 MQYANSHQYTYG 25 (249)
T ss_dssp HHHHHHTTCEEE
T ss_pred HHHhhhccceec
Confidence 455555555554
No 9
>1zei_A Insulin, B28Asp-X-MCR; hormone, metabolic role, chemical activity, insulin mutant, cross-LINK, glucose metabolism, diabetes; 1.90A {Sus scrofa} SCOP: g.1.1.1 PDB: 6ins_E 1sju_A 2jzq_A
Probab=10.80 E-value=57 Score=25.46 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=10.6
Q ss_pred HHHHHhhccceee
Q 008002 106 MMEVCKAQGFVYG 118 (582)
Q Consensus 106 mMEvC~aqGFVYG 118 (582)
|--||..+||.|.
T Consensus 15 L~~vC~~rgf~~~ 27 (53)
T 1zei_A 15 LYLVCGERGFFYT 27 (53)
T ss_dssp HHHHHGGGCEEEE
T ss_pred HHHHHcccCeecC
Confidence 4468999999986
No 10
>2l58_A Activator of apoptosis harakiri; BCL-2, BH3-only, intrinsically disorder protein; NMR {Synthetic}
Probab=10.49 E-value=82 Score=22.86 Aligned_cols=11 Identities=55% Similarity=1.235 Sum_probs=7.1
Q ss_pred HHHH-Hhhhhhh
Q 008002 49 DELE-RRMWKDK 59 (582)
Q Consensus 49 ~eLe-~rmWkDr 59 (582)
|||. |-|||.|
T Consensus 21 del~~rtmwrrr 32 (33)
T 2l58_A 21 DELHQRTMWRRR 32 (33)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhc
Confidence 4564 4599865
Done!