BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008003
(581 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 333 bits (855), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 175/367 (47%), Positives = 247/367 (67%), Gaps = 1/367 (0%)
Query: 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPG 246
PR PVVT+MGHVDHGKTSLL+ +R T + + EAGGITQH+GA+ V G ITFLDTPG
Sbjct: 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGM-ITFLDTPG 60
Query: 247 HAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXXXXXXXKCDKPAADP 306
HAAF++MR RGA TDIVVLVVAADDGVMPQT+E K DKP ADP
Sbjct: 61 HAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP 120
Query: 307 ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQA 366
+RVKN+L G+ E+WGG+ Q V VSA TG+D+L A+LLQAE++ LKA G A
Sbjct: 121 DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASG 180
Query: 367 YVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVE 426
V+E+ LDKGRGP+ T +V+ GTL G V+ G E+GR+RA+R+ +G+ +A P++PVE
Sbjct: 181 AVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVE 240
Query: 427 IEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRA 486
I GL G+P AGD++ VV E++AR ++ R+ KF + ++ + + + EN+ + +
Sbjct: 241 ILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVH 300
Query: 487 EMPVIVKADVQGTVQAVTDALKTLNSPQLFXXXXXXXXXXXTQSDVDLAQACGACIVGFN 546
E+ +++KADVQG+V+A++D+L L++ ++ T++D LA A A +VGFN
Sbjct: 301 EVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFN 360
Query: 547 VKSPPTS 553
V++ ++
Sbjct: 361 VRADASA 367
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 308 bits (790), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 179/420 (42%), Positives = 248/420 (59%), Gaps = 39/420 (9%)
Query: 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTP 245
+PR PVVT+MGHVDHGKT+LLD LR+T + A EAGGITQH+GAF+V + +G ITFLDTP
Sbjct: 1 IPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTP 60
Query: 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXXXXXXXKCDKPAAD 305
GHAAFSAMR RG VTDIV+LVVAADDGVM QT+E KCDK AD
Sbjct: 61 GHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEAD 120
Query: 306 PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQ 365
PE+VK +L A + ED+GG VQ V VSA+ + L A + AEM+ LKA G +
Sbjct: 121 PEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVE 180
Query: 366 AYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPV 425
V+E+ DKGRGP+TTAI++ GTL G +V G W ++R + D G++ ++A P+MPV
Sbjct: 181 GTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSMPV 240
Query: 426 EIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDR----VRKINEERTEN------ 475
I G + LP AGD+I+ V+SE RAR + RK + E+++ ++ I E+R E+
Sbjct: 241 GIIGWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRK 300
Query: 476 --------------------------LEPSEDVPKRAE-MPVIVKADVQGTVQAVTDALK 508
L+P E + + + +PVIVK DV G+V+A+ + +
Sbjct: 301 DREKYGTVHWKERSYIKYREKRQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMD 360
Query: 509 TLN-SPQLFXXXXXXXXXXXTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGIKTRL 567
T + S + +++DV+LA+ I GFNV + + Q A + G+K +L
Sbjct: 361 TYDASHECELDLVHFGVGDISENDVNLAETFHGVIYGFNVNA-GNVIQQLAAKKGVKIKL 419
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 119/178 (66%), Gaps = 1/178 (0%)
Query: 182 GTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITF 241
G+ ++ RPPVVT+MGHVDHGKT+LLDA+R + + +EAGGITQH+GA+ V ++ ITF
Sbjct: 1 GSHMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN-DKKITF 59
Query: 242 LDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXXXXXXXKCDK 301
LDTPGH AF+ MR RGA VTDIV+LVVAADDGVMPQT+E K DK
Sbjct: 60 LDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDK 119
Query: 302 PAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKAR 359
P A+P+RV +L L E+WGG ++SA K GLD L +LL +EM LKA
Sbjct: 120 PEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELKAN 177
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 119/255 (46%), Gaps = 52/255 (20%)
Query: 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS------------- 234
R P+V+V+GHVDHGKT+LLD +R +++ ++EAGGITQH+GA + M
Sbjct: 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKF 63
Query: 235 ----TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXX 290
T + F+DTPGH AF+ +RKRG A+ D+ +L+V ++G PQT E
Sbjct: 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT 123
Query: 291 XXXXXXXKCD----------KPAADP----------------ERVKNQLGAEGLELE--- 321
K D +P + + +L EG E E
Sbjct: 124 PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFD 183
Query: 322 ---DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMM---NLKARVDGPAQAYVVEARLDK 375
D+ +V ++ +SA+ G+ +L L+ A+ LK D PA+ ++E + +
Sbjct: 184 RVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEET 243
Query: 376 GRGPLTTAIVKAGTL 390
G G A++ G L
Sbjct: 244 GLGMTIDAVIYDGIL 258
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 121/255 (47%), Gaps = 52/255 (20%)
Query: 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGA--------------FVVGM 233
R P+V+V+GHVDHGKT+LLD +R +++ ++EAGGITQH+GA F+
Sbjct: 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFLKKF 63
Query: 234 S---TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXX 290
S T + F+DTPGH AF+ +RKRG A+ D+ +L+V ++G PQT E
Sbjct: 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRT 123
Query: 291 XXXXXXXKCD----------KPAADPERVKN----------------QLGAEGLELE--- 321
K D +P + ++ +L EG E E
Sbjct: 124 PFVVAANKIDRIHGWRVHEGRPFXETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFD 183
Query: 322 ---DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMM---NLKARVDGPAQAYVVEARLDK 375
D+ +V ++ +SA+ G+ +L L A+ LK D PA+ ++E + +
Sbjct: 184 RVTDFASQVSIIPISAITGEGIPELLTXLXGLAQQYLREQLKIEEDSPARGTILEVKEET 243
Query: 376 GRGPLTTAIVKAGTL 390
G G A++ G L
Sbjct: 244 GLGXTIDAVIYDGIL 258
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 97/227 (42%), Gaps = 30/227 (13%)
Query: 193 TVMGHVDHGKTSLLDALRQT---------------SLVAKEAGGITQHMGAFVVGMSTGA 237
+++ H+DHGK++L D + Q S+ + GIT + A V + A
Sbjct: 8 SIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT--IKAQSVTLDYKA 65
Query: 238 S------ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXX 291
S + F+DTPGH FS R A + +LVV A GV QTL
Sbjct: 66 SDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE 125
Query: 292 XXXXXXKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351
K D PAADPERV E+ED G V KTG+ +V L
Sbjct: 126 VVPVLNKIDLPAADPERVAE-------EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVR 178
Query: 352 EMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVV 398
++ + +GP QA ++++ D G ++ +K GTL G V V
Sbjct: 179 DIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKV 225
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 97/227 (42%), Gaps = 30/227 (13%)
Query: 193 TVMGHVDHGKTSLLDALRQT---------------SLVAKEAGGITQHMGAFVVGMSTGA 237
+++ H+DHGK++L D + Q S+ + GIT + A V + A
Sbjct: 8 SIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT--IKAQSVTLDYKA 65
Query: 238 S------ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXX 291
S + F+DTPGH FS R A + +LVV A GV QTL
Sbjct: 66 SDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE 125
Query: 292 XXXXXXKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351
K D PAADPERV E+ED G V KTG+ +V L
Sbjct: 126 VVPVLNKIDLPAADPERVAE-------EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVR 178
Query: 352 EMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVV 398
++ + +GP QA ++++ D G ++ +K GTL G V V
Sbjct: 179 DIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKV 225
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 32/174 (18%)
Query: 126 VVELAKQSGASITTLQDILVNVG-EKVDSEFEPLSIDVAELVVMELGFNVRRIHSSEGTE 184
V +L K+ A +T V G EKV+++F AE+ M ++ H S+
Sbjct: 242 VGQLLKEHNAEVTGFIRFEVGEGIEKVETDF------AAEVAAMS-----KQSHMSKEKF 290
Query: 185 ILPRPPV-VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAF-------VVGMSTG 236
+P V V +GHVDHGKT+L A+ T+++AK GG + G++
Sbjct: 291 ERTKPHVNVGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITIN 348
Query: 237 AS----------ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
S +D PGHA + GAA D +LVVAA DG MPQT E
Sbjct: 349 TSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 402
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 32/174 (18%)
Query: 126 VVELAKQSGASITTLQDILVNVG-EKVDSEFEPLSIDVAELVVMELGFNVRRIHSSEGTE 184
V +L K+ A +T V G EKV+++F AE+ M ++ H S+
Sbjct: 242 VGQLLKEHNAEVTGFIRFEVGEGIEKVETDF------AAEVAAMS-----KQSHMSKEKF 290
Query: 185 ILPRPPV-VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAF-------VVGMSTG 236
+P V V +GHVDHGKT+L A+ T+++AK GG + G++
Sbjct: 291 ERTKPHVNVGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITIN 348
Query: 237 AS----------ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
S +D PGHA + GAA D +LVVAA DG MPQT E
Sbjct: 349 TSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 402
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMG---AFVVGMSTGASITFLDTPGHA 248
V +GHVDHGKT+L A+ T+++AK GG + + + V + +D PGHA
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARGITINTSHVEYDTPTRHYAHVDCPGHA 71
Query: 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+ GAA D +LVVAA DG MPQT E
Sbjct: 72 DYVKNMITGAAQMDGAILVVAATDGPMPQTRE 103
>pdb|1Z9B|A Chain A, Solution Structure Of The C1-Subdomain Of Bacillus
Stearothermophilus Translation Initiation Factor If2
Length = 135
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 487 EMPVIVKADVQGTVQAVTDALKTLNSPQLFXXXXXXXXXXXTQSDVDLAQACGACIVGFN 546
E+ +IVKADVQG+V+A+ AL+ ++ + T+SD+ LA A A ++GFN
Sbjct: 41 ELNLIVKADVQGSVEALVAALQKIDVEGVRVKIIHAAVGAITESDISLATASNAIVIGFN 100
Query: 547 VKSPPTSVSQAATQAGIKTRL 567
V+ P + +AA + RL
Sbjct: 101 VR-PDANAKRAAESEKVDIRL 120
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAF-------VVGMSTGAS------ 238
V +GHVDHGKT+L A+ T+++AK GG + G++ S
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 71
Query: 239 ----ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+D PGHA + GAA D +LVVAA DG MPQT E
Sbjct: 72 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 117
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAF-------VVGMSTGAS------ 238
V +GHVDHGKT+L A+ T+++AK GG + G++ S
Sbjct: 15 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 72
Query: 239 ----ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+D PGHA + GAA D +LVVAA DG MPQT E
Sbjct: 73 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 118
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAF-------VVGMSTGAS------ 238
V +GHVDHGKT+L A+ T+++AK GG + G++ S
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 71
Query: 239 ----ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+D PGHA + GAA D +LVVAA DG MPQT E
Sbjct: 72 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 117
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAF-------VVGMSTGAS------ 238
V +GHVDHGKT+L A+ T+++AK GG + G++ S
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 71
Query: 239 ----ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+D PGHA + GAA D +LVVAA DG MPQT E
Sbjct: 72 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 117
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAF-------VVGMSTGAS------ 238
V +GHVDHGKT+L A+ T+++AK GG + G++ S
Sbjct: 15 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 72
Query: 239 ----ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+D PGHA + GAA D +LVVAA DG MPQT E
Sbjct: 73 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 118
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAF-------VVGMSTGAS------ 238
V +GHVDHGKT+L A+ T+++AK GG + G++ S
Sbjct: 6 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 63
Query: 239 ----ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+D PGHA + GAA D +LVVAA DG MPQT E
Sbjct: 64 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 109
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 52/108 (48%), Gaps = 23/108 (21%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAG------------------GITQHMGAFVVGM 233
V +GHVDHGKT+L A+ T ++A+ G GIT + A V
Sbjct: 6 VGTIGHVDHGKTTLTAAI--TKILAEGGGAKFKKYEEIDNAPEERARGIT--INAAHVEY 61
Query: 234 STGA-SITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
ST A D PGHA + G A D +LVVAA+DG MPQT E
Sbjct: 62 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTRE 109
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 31/232 (13%)
Query: 194 VMGHVDHGKTSLLDALRQTS---------------LVAKEAGGITQHMGAFVVGMSTGAS 238
++ HVDHGK++L D L + + L + GIT M A +
Sbjct: 11 IIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDG 70
Query: 239 ITF----LDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXXXX 294
T+ +DTPGH FS R A + +L++ A G+ QT+
Sbjct: 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIP 130
Query: 295 XXXKCDKPAADPERVKNQL-GAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM 353
K D P+AD +RVK Q+ GL+ E + + SA + G++++ A++ +
Sbjct: 131 VINKIDLPSADVDRVKKQIEEVLGLDPE------EAILASAKEGIGIEEILEAIV--NRI 182
Query: 354 MNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVV---GHEW 402
K P +A + ++ D RG + + G + G +++ G E+
Sbjct: 183 PPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEY 234
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 56/118 (47%), Gaps = 24/118 (20%)
Query: 183 TEILPRPPV-VTVMGHVDHGKTSLLDALRQTSLVAKEAG------------------GIT 223
T + +P V V +GHVDHGKT+L A+ T ++A+ G GIT
Sbjct: 7 TYVRDKPHVNVGTIGHVDHGKTTLTAAI--TKILAEGGGAKFKKYEEIDNAPEERARGIT 64
Query: 224 QHMGAFVVGMSTGA-SITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+ A V ST A D PGHA + G A D +LVVAA+DG PQT E
Sbjct: 65 --INAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTRE 120
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 22/173 (12%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMG---------AFVVGMSTGAS---- 238
+ V+GHVDHGKT+L+ A+ +K+ G ++G A+V S +
Sbjct: 11 IGVVGHVDHGKTTLVQAITGI-WTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDD 69
Query: 239 -------ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEXXXXXXXXXX 290
I+F+D PGH A GAA+ D +LVVAA++ PQT E
Sbjct: 70 EPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV 129
Query: 291 XXXXXXXKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343
+ E + + W V ++ VSA+ K +D L
Sbjct: 130 KNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSL 182
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 58/121 (47%), Gaps = 23/121 (19%)
Query: 180 SEGTEILPRPPV-VTVMGHVDHGKTSLLDALRQTSLVAKE-------------------A 219
++G I +P V V +GHVDHGKT+L AL T + A E A
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAAL--TYVTAAENPNVEVKDYGDIDKAPEERA 58
Query: 220 GGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTL 279
GIT + A V + + +D PGHA + GAA D +LVV+A DG MPQT
Sbjct: 59 RGITINT-AHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTR 117
Query: 280 E 280
E
Sbjct: 118 E 118
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 58/121 (47%), Gaps = 23/121 (19%)
Query: 180 SEGTEILPRPPV-VTVMGHVDHGKTSLLDALRQTSLVAKE-------------------A 219
++G I +P V V +GHVDHGKT+L AL T + A E A
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERA 58
Query: 220 GGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTL 279
GIT + A V + + +D PGHA + GAA D +LVV+A DG MPQT
Sbjct: 59 RGITINT-AHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTR 117
Query: 280 E 280
E
Sbjct: 118 E 118
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 58/121 (47%), Gaps = 23/121 (19%)
Query: 180 SEGTEILPRPPV-VTVMGHVDHGKTSLLDALRQTSLVAKE-------------------A 219
++G I +P V V +GHVDHGKT+L AL T + A E A
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERA 58
Query: 220 GGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTL 279
GIT + A V + + +D PGHA + GAA D +LVV+A DG MPQT
Sbjct: 59 RGITINT-AHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTR 117
Query: 280 E 280
E
Sbjct: 118 E 118
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 58/119 (48%), Gaps = 19/119 (15%)
Query: 180 SEGTEILPRPPV-VTVMGHVDHGKTSLLDAL------RQTSLVAKEAG-----------G 221
++G I +P V V +GHVDHGKT+L AL ++ K+ G G
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 222 ITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
IT + A V + + +D PGHA + GAA D +LVV+A DG MPQT E
Sbjct: 61 ITINT-AHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 31/232 (13%)
Query: 194 VMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASIT------------- 240
++ HVDHGK++L D L + + E Q + V G ++
Sbjct: 11 IIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQAVRXFYKAKDG 70
Query: 241 ------FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXXXX 294
+DTPGH FS R A + +L++ A G+ QT+
Sbjct: 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIP 130
Query: 295 XXXKCDKPAADPERVKNQL-GAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM 353
K D P+AD +RVK Q+ GL+ E + + SA + G++++ A++ +
Sbjct: 131 VINKIDLPSADVDRVKKQIEEVLGLDPE------EAILASAKEGIGIEEILEAIV--NRI 182
Query: 354 MNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVV---GHEW 402
K P +A + ++ D RG + + G + G + + G E+
Sbjct: 183 PPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIXLXSTGKEY 234
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 58/119 (48%), Gaps = 19/119 (15%)
Query: 180 SEGTEILPRPPV-VTVMGHVDHGKTSLLDAL------RQTSLVAKEAG-----------G 221
++G I +P V V +GHVDHGKT+L AL ++ K+ G G
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 222 ITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
IT + A V + + +D PGHA + GAA D +LVV+A DG MPQT E
Sbjct: 61 ITINT-AHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 22/108 (20%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKE-------------------AGGITQHMGAFVVG 232
V +GHVDHGKT+L AL T + A E A GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAAL--TYVTAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEY 70
Query: 233 MSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+ + +D PGHA + GAA D +LVV+A DG MPQT E
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 22/108 (20%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKE-------------------AGGITQHMGAFVVG 232
V +GHVDHGKT+L AL T + A E A GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEY 70
Query: 233 MSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+ + +D PGHA + GAA D +LVV+A DG MPQT E
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 22/108 (20%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKE-------------------AGGITQHMGAFVVG 232
V +GHVDHGKT+L AL T + A E A GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEY 70
Query: 233 MSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+ + +D PGHA + GAA D +LVV+A DG MPQT E
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 22/108 (20%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKE-------------------AGGITQHMGAFVVG 232
V +GHVDHGKT+L AL T + A E A GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEY 70
Query: 233 MSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+ + +D PGHA + GAA D +LVV+A DG MPQT E
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 22/108 (20%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKE-------------------AGGITQHMGAFVVG 232
V +GHVDHGKT+L AL T + A E A GIT + A V
Sbjct: 15 VGTIGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEY 71
Query: 233 MSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+ + +D PGHA + GAA D +LVV+A DG MPQT E
Sbjct: 72 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 119
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAG----GITQHMGAFV-----VGMSTGAS---- 238
+ V+ HVD GKT+L ++L S E G G T+ + + + TG +
Sbjct: 5 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 64
Query: 239 ----ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQT 278
+ +DTPGH F A R +V D +L+++A DGV QT
Sbjct: 65 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQT 108
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 26/178 (14%)
Query: 192 VTVMGHVDHGKTSLLDALR--QTSLVAKEA---GGITQHMG---------AFVVGMSTGA 237
+ V+GHVDHGKT+L+ A+ TS ++E G ++G A+V S +
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEAYVTEPSCKS 70
Query: 238 S-----------ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEXXXXX 285
I+F+D PGH A GAA+ D +LVVAA++ PQT E
Sbjct: 71 CGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL 130
Query: 286 XXXXXXXXXXXXKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343
+ E + + W V ++ VSA+ K +D L
Sbjct: 131 GIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSL 188
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 31/183 (16%)
Query: 192 VTVMGHVDHGKTSLLDALR--QTSLVAKEAG-GITQHMG----------------AFVVG 232
+ V+GHVDHGKT+L+ A+ TS ++E G+T +G A+V
Sbjct: 12 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 71
Query: 233 MSTGAS-----------ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLE 280
S + I+F+D PGH A GAA+ D +LVVAA++ PQT E
Sbjct: 72 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 131
Query: 281 XXXXXXXXXXXXXXXXXKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340
+ E + + W V ++ VSA+ K +
Sbjct: 132 HFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINI 191
Query: 341 DDL 343
D L
Sbjct: 192 DSL 194
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 31/183 (16%)
Query: 192 VTVMGHVDHGKTSLLDALR--QTSLVAKEAG-GITQHMG----------------AFVVG 232
+ V+GHVDHGKT+L+ A+ TS ++E G+T +G A+V
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70
Query: 233 MSTGAS-----------ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLE 280
S + I+F+D PGH A GAA+ D +LVVAA++ PQT E
Sbjct: 71 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 130
Query: 281 XXXXXXXXXXXXXXXXXKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340
+ E + + W V ++ VSA+ K +
Sbjct: 131 HFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINI 190
Query: 341 DDL 343
D L
Sbjct: 191 DSL 193
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 18/217 (8%)
Query: 194 VMGHVDHGKTSLLDALRQTS-------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPG 246
+ GH+DHGKT+L L + + L + GIT +G F IT +D PG
Sbjct: 24 IFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIG-FSAFKLENYRITLVDAPG 82
Query: 247 HAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXXXXXXXKCDKPAADP 306
HA A + D+ ++VV A +G QT E K D +
Sbjct: 83 HADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEE 142
Query: 307 ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE---VALLLQAEMM-NLKARVDG 362
+ + L+ ++ +SA G+D+L+ + L AE++ N ++
Sbjct: 143 IKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKM 202
Query: 363 PA-QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVV 398
P A+ + KG G + T + G + G + V
Sbjct: 203 PLDHAFPI-----KGAGTVVTGTINKGIVKVGDELKV 234
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKE-------------------AGGITQHMG 227
R V +GHVDHGKT+L AL T + A E A GIT +
Sbjct: 9 KRHVNVGTIGHVDHGKTTLTAAL--TYVAAAENRNVEVKDYGDIDKAREERARGITINT- 65
Query: 228 AFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
A V + + +D GHA + GAA D +LVV+A DG M QT E
Sbjct: 66 AHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTRE 118
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 26/115 (22%)
Query: 192 VTVMGHVDHGKTSLLDALR--QTSLVAKEAG-GITQHMG--------------------A 228
+ ++GHVDHGKT+L AL T ++E GIT +G
Sbjct: 14 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCSNCGRYSTSPIC 73
Query: 229 FVVGMSTGA--SITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLE 280
G T ++F+D+PGH A GA++ D +LV+AA++ PQT E
Sbjct: 74 PYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE 128
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 242 LDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+D PGHA + GAA D +LVVAA DG MPQT E
Sbjct: 21 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 59
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 242 LDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
+D PGHA + GAA D +LVVAA DG MPQT E
Sbjct: 21 VDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 59
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 26/115 (22%)
Query: 192 VTVMGHVDHGKTSLLDALR--QTSLVAKEAG-GITQHMG--------------------A 228
+ +GHVDHGKT+L AL T ++E GIT +G
Sbjct: 13 IGXVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72
Query: 229 FVVGMSTGA--SITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLE 280
G T ++F+D PGH A GA++ D +LV+AA++ PQT E
Sbjct: 73 PYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRPQTRE 127
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 26/115 (22%)
Query: 192 VTVMGHVDHGKTSLLDALR--QTSLVAKEAG-GITQHMG--------------------A 228
+ ++GHVDHGKT+L AL T ++E GIT +G
Sbjct: 13 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72
Query: 229 FVVGMSTGA--SITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLE 280
G T ++F+D PGH A GA++ D +LV+AA++ PQT E
Sbjct: 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE 127
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 26/115 (22%)
Query: 192 VTVMGHVDHGKTSLLDALR--QTSLVAKEAG-GITQHMG--------------------A 228
+ ++GHVDHGKT+L AL T ++E GIT +G
Sbjct: 13 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72
Query: 229 FVVGMSTGA--SITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLE 280
G T ++F+D PGH A GA++ D +LV+AA++ PQT E
Sbjct: 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE 127
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 32/118 (27%)
Query: 192 VTVMGHVDHGKTSLLDAL------RQTSLVAKEAGGITQHMG--------AFVVGMSTGA 237
+ ++GHVDHGKTSL AL R + + + GI+ +G G T
Sbjct: 11 IGMVGHVDHGKTSLTKALTGVWTDRHSEELRR---GISIRLGYADCEIRKCPQCGTYTTK 67
Query: 238 S--------------ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLE 280
++F+D+PGH A GA++ D +LV+AA++ PQT E
Sbjct: 68 PRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE 125
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 228 AFVVGMSTGAS---ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXX 284
AF GM+ I +DTPGH F+ +R V D V+V A GV PQ+
Sbjct: 70 AFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ 129
Query: 285 XXXXXXXXXXXXXKCDKPAADPERVKNQ----LGAEGLEL-------EDWGGKVQVVEVS 333
K D+ A+ +V NQ LGA + L E + G V +V++
Sbjct: 130 ANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMK 189
Query: 334 AVKKTGLD 341
A+ D
Sbjct: 190 AINWNDAD 197
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 228 AFVVGMSTGAS---ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXX 284
AF GM+ I +DTPGH F+ +R V D V+V A GV PQ+
Sbjct: 69 AFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ 128
Query: 285 XXXXXXXXXXXXXKCDKPAADPERVKNQ----LGAEGLEL-------EDWGGKVQVVEVS 333
K D+ A+ +V NQ LGA + L E + G V +V++
Sbjct: 129 ANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMK 188
Query: 334 AVKKTGLD 341
A+ D
Sbjct: 189 AINWNDAD 196
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 31/118 (26%)
Query: 192 VTVMGHVDHGKTSLLDALRQTS--LVAKEAG--------------GITQHMGAF------ 229
++V+ HVDHGK++L D+L Q + + A +AG GIT A
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 230 -------VVGMSTGAS--ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQT 278
+ + G S I +D+PGH FS+ VTD ++VV +GV QT
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQT 139
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 31/118 (26%)
Query: 192 VTVMGHVDHGKTSLLDALRQTS--LVAKEAG--------------GITQHMGAF------ 229
++V+ HVDHGK++L D+L Q + + A +AG GIT A
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 230 -------VVGMSTGAS--ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQT 278
+ + G S I +D+PGH FS+ VTD ++VV +GV QT
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQT 139
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQT 278
G + +DTPGH F+ +R V D V V+ A GV PQT
Sbjct: 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQT 116
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQT 278
G + +DTPGH F+ +R V D V V+ A GV PQT
Sbjct: 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQT 116
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 21/108 (19%)
Query: 194 VMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVV-----------GMSTGAS---- 238
++ H D GKT+L + L + AG I A G+S S
Sbjct: 18 IISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTSVXQF 77
Query: 239 ------ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
I LDTPGHA F+ R D + V+ A GV P+T++
Sbjct: 78 PYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIK 125
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 32/113 (28%)
Query: 192 VTVMGHVDHGKTSLLDAL------------RQTSLVAKEAG------------------- 220
+ V+GHVDHGK++L+ L ++ AK+ G
Sbjct: 9 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER 68
Query: 221 GITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG 273
G+T ++ F+ + T +D PGH F GA+ D +LVV+A G
Sbjct: 69 GVTINL-TFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG 120
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 13/115 (11%)
Query: 192 VTVMGHVDHGKTSLLD-ALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250
+ + H+D GKT+ + L T +A H I +DTPGH F
Sbjct: 10 IGIAAHIDAGKTTTTERILYYTGRIAVTTCFWKDH------------RINIIDTPGHVDF 57
Query: 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXXXXXXXKCDKPAAD 305
+ +R V D ++V + GV PQ+ K DK AD
Sbjct: 58 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD 112
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVV---------GMSTGASIT-- 240
+ + H+D GKT+ + + + + G + H GA + G++ A++T
Sbjct: 15 IVIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITITAAVTTC 72
Query: 241 --------FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXX 292
+DTPGH F+ +R V D ++V + GV PQ+
Sbjct: 73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 293 XXXXXKCDKPAAD 305
K DK AD
Sbjct: 133 IAFANKMDKTGAD 145
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 24/168 (14%)
Query: 192 VTVMGHVDHGKTSLLDALRQT--SLVAKEAGGITQHMGAF-VVGMSTGASITFLDTPGHA 248
V ++G + GK++LL+ L T S+++ +AG T M V + A I FLDTPG
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAG--TTRMRVLGVKNIPNEAQIIFLDTPGIY 69
Query: 249 ----------AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXX-XXXXXXXXXX 297
+ + K+ D+++ ++ A +G P+ E
Sbjct: 70 EPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVIN 129
Query: 298 KCDK--PAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343
K DK PA + + +++ + EL ++V +SA+K LD+L
Sbjct: 130 KIDKIGPAKNVLPLIDEIHKKHPEL------TEIVPISALKGANLDEL 171
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 25/145 (17%)
Query: 194 VMGHVDHGKTSLLDALRQTSLVAKEAG-----GITQHMGAFVVGMST--GASIT------ 240
++ H D GKT++ + + + AG G QH + + M G SIT
Sbjct: 18 IISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF 77
Query: 241 --------FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXX 292
LDTPGH FS R D ++V+ A GV +T +
Sbjct: 78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI 137
Query: 293 XXXXXKCDKPAADP----ERVKNQL 313
K D+ DP + V+N+L
Sbjct: 138 LTFMNKLDRDIRDPMELLDEVENEL 162
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 25/145 (17%)
Query: 194 VMGHVDHGKTSLLDALRQTSLVAKEAG-----GITQHMGAFVVGMST--GASIT------ 240
++ H D GKT++ + + + AG G QH + + M G SIT
Sbjct: 18 IISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF 77
Query: 241 --------FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXX 292
LDTPGH FS R D ++V+ A GV +T +
Sbjct: 78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI 137
Query: 293 XXXXXKCDKPAADP----ERVKNQL 313
K D+ DP + V+N+L
Sbjct: 138 LTFMNKLDRDIRDPMELLDEVENEL 162
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 24/168 (14%)
Query: 192 VTVMGHVDHGKTSLLDALRQT--SLVAKEAGGITQHMGAF-VVGMSTGASITFLDTPGHA 248
V ++G + GK++LL+ L T S+++ +AG T M V + A I FLDTPG
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAG--TTRMRVLGVKNIPNEAQIIFLDTPGIY 70
Query: 249 ----------AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXX-XXXXXXXXXX 297
+ + K+ D+++ ++ A +G P+ E
Sbjct: 71 EPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVIN 130
Query: 298 KCDK--PAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343
K DK PA + + +++ + EL ++V +SA+K LD+L
Sbjct: 131 KIDKIGPAKNVLPLIDEIHKKHPEL------TEIVPISALKGANLDEL 172
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVV---------GMSTGASIT-- 240
+ + H+D GKT+ + + + + G + H GA + G++ A++T
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITITAAVTTC 72
Query: 241 --------FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXX 292
+DTPGH F+ +R V D ++V + GV PQ+
Sbjct: 73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 293 XXXXXKCDKPAAD 305
K DK AD
Sbjct: 133 IAFANKMDKTGAD 145
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVV---------GMSTGASIT-- 240
+ + H+D GKT+ + + + + G + H GA + G++ A++T
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITITAAVTTC 72
Query: 241 --------FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXX 292
+DTPGH F+ +R V D ++V + GV PQ+
Sbjct: 73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 293 XXXXXKCDKPAAD 305
K DK AD
Sbjct: 133 IAFANKMDKTGAD 145
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVV---------GMSTGASIT-- 240
+ + H+D GKT+ + + + + G + H GA + G++ A++T
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITITAAVTTC 72
Query: 241 --------FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXX 292
+DTPGH F+ +R V D ++V + GV PQ+
Sbjct: 73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 293 XXXXXKCDKPAAD 305
K DK AD
Sbjct: 133 IAFANKMDKTGAD 145
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVV---------GMSTGASIT-- 240
+ + H+D GKT+ + + + + G + H GA + G++ A++T
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITITAAVTTC 72
Query: 241 --------FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXX 292
+DTPGH F+ +R V D ++V + GV PQ+
Sbjct: 73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 293 XXXXXKCDKPAAD 305
K DK AD
Sbjct: 133 IAFANKMDKTGAD 145
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 37/180 (20%)
Query: 192 VTVMGHVDHGKTSLLD------------------ALRQTSLVAKEAGGITQHMGAFVV-- 231
+ + HVD GKT+ + A +V ++ GIT A
Sbjct: 16 IGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFW 75
Query: 232 ----GMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXX 287
G + +DTPGH F+ +R V D V+V GV PQ+
Sbjct: 76 KGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK 135
Query: 288 XXXXXXXXXXKCDKPAAD----PERVKNQLG--------AEGLELEDWGGKVQVVEVSAV 335
K D+ A+ E++K +LG A G E E++ G+V ++++ A+
Sbjct: 136 YGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVPVQLAIGAE-ENFVGQVDLIKMKAI 194
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQT 278
G + +DTPGH + +R V D V V+ A GV PQT
Sbjct: 74 GHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQT 116
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQT 278
G + +DTPGH + +R V D V V+ A GV PQT
Sbjct: 74 GHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQT 116
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 239 ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE 280
T LD PGH +F GA+ D+ VLV++A G E
Sbjct: 97 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFE 138
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 243 DTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQT 278
DTPGH ++ GA+ D+ +++V A GV QT
Sbjct: 110 DTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQT 145
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 21/133 (15%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVV---------GMSTGASIT-- 240
+ + H+D GKT+ + + + + G + H GA + G++ A++T
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITITAAVTTC 72
Query: 241 --------FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXX 292
+D PGH F+ +R V D ++V + GV PQ+
Sbjct: 73 FWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 293 XXXXXKCDKPAAD 305
K DK AD
Sbjct: 133 IAFANKMDKTGAD 145
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 21/133 (15%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVV---------GMSTGASIT-- 240
+ + H+D GKT+ + + + + G + H GA + G++ A++T
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITITAAVTTC 72
Query: 241 --------FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXXX 292
+D PGH F+ +R V D ++V + GV PQ+
Sbjct: 73 FWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 293 XXXXXKCDKPAAD 305
K DK AD
Sbjct: 133 IAFANKMDKTGAD 145
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 32/113 (28%)
Query: 192 VTVMGHVDHGKTSLLDAL----------------RQTSLVAKEAG--------------- 220
+ V+GHVDHGK++L+ L Q KE+
Sbjct: 9 LVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERER 68
Query: 221 GITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG 273
GIT + F+ + T +D PGH F GA+ D +LVV+A G
Sbjct: 69 GITIDL-TFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKG 120
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 23/134 (17%)
Query: 192 VTVMGHVDHGKTSLLD-ALRQTSLVAKEAGGITQHMGAFVV---------GMSTGASIT- 240
+ + H+D GKT+ + L T + K A H GA + G++ A++T
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIA---EVHEGAATMDFMEQERERGITITAAVTT 71
Query: 241 ---------FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEXXXXXXXXXXX 291
+D PGH F+ +R V D ++V + GV PQ+
Sbjct: 72 CFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131
Query: 292 XXXXXXKCDKPAAD 305
K DK AD
Sbjct: 132 RIAFANKMDKTGAD 145
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 32/113 (28%)
Query: 192 VTVMGHVDHGKTSLLDAL----------------RQTSLVAKEAG--------------- 220
+ V+GHVDHGK++L+ L Q KE+
Sbjct: 12 LVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERER 71
Query: 221 GITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG 273
GIT + F+ + T +D PGH F GA+ D +LVV+A G
Sbjct: 72 GITIDL-TFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKG 123
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 30/112 (26%)
Query: 192 VTVMGHVDHGKTSLL-DALRQTSLV-----------AKEAGGITQHMGAFVVGMS----T 235
+ +GHVD GK++L + L T +V AKEAG + ++ + S
Sbjct: 46 IVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREK 105
Query: 236 GASI--------------TFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG 273
G ++ + LD PGH + GA+ DI VLV++A G
Sbjct: 106 GKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGG 221
V +GHVDHGKT+L A+ T+++AK GG
Sbjct: 7 VGTIGHVDHGKTTLTAAI--TTVLAKTYGG 34
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 21/106 (19%)
Query: 194 VMGHVDHGKTSLLDALRQTSLVAKEAGGI-----TQHMGAFVVGMST--GASIT------ 240
++ H D GKT+L + L + AG + +H + + M G S+T
Sbjct: 36 IISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF 95
Query: 241 --------FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQT 278
LDTPGH FS R D ++V+ A GV QT
Sbjct: 96 PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT 141
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-- 249
V +G D GKT L L T IT + V + G S+T +D PGH +
Sbjct: 10 VLFVGLCDSGKTLLFVRLL-TGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 68
Query: 250 FSAMRKRGAAVTDIVVLVVAA 270
F + + ++ +V +V +A
Sbjct: 69 FQLLDRFKSSARAVVFVVDSA 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,715,510
Number of Sequences: 62578
Number of extensions: 498817
Number of successful extensions: 1573
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1411
Number of HSP's gapped (non-prelim): 118
length of query: 581
length of database: 14,973,337
effective HSP length: 104
effective length of query: 477
effective length of database: 8,465,225
effective search space: 4037912325
effective search space used: 4037912325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)