Query 008003
Match_columns 581
No_of_seqs 714 out of 4496
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 18:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1145 Mitochondrial translat 100.0 9.3E-80 2E-84 642.4 41.9 459 114-573 58-556 (683)
2 PRK05306 infB translation init 100.0 3.8E-72 8.3E-77 634.2 48.5 456 112-573 211-672 (787)
3 TIGR00487 IF-2 translation ini 100.0 2.7E-71 5.8E-76 614.8 48.3 454 115-573 3-470 (587)
4 COG0532 InfB Translation initi 100.0 1.1E-71 2.3E-76 589.7 40.0 384 186-573 2-391 (509)
5 CHL00189 infB translation init 100.0 1.5E-69 3.2E-74 607.9 46.7 454 112-573 154-627 (742)
6 TIGR00491 aIF-2 translation in 100.0 3.2E-56 6.9E-61 493.5 39.3 361 187-573 2-437 (590)
7 PRK04004 translation initiatio 100.0 7.7E-56 1.7E-60 492.4 39.8 362 186-573 3-439 (586)
8 PRK14845 translation initiatio 100.0 1.4E-51 3.1E-56 475.0 38.8 347 202-573 474-895 (1049)
9 COG0486 ThdF Predicted GTPase 100.0 3.1E-50 6.7E-55 421.3 14.8 285 15-352 67-376 (454)
10 TIGR00450 mnmE_trmE_thdF tRNA 100.0 2.8E-45 6.2E-50 396.0 18.8 281 15-351 57-359 (442)
11 PRK05291 trmE tRNA modificatio 100.0 1.4E-45 3E-50 400.5 14.4 280 15-351 65-369 (449)
12 KOG1144 Translation initiation 100.0 6.8E-40 1.5E-44 351.0 23.5 365 186-573 472-908 (1064)
13 KOG1191 Mitochondrial GTPase [ 100.0 3.9E-35 8.4E-40 306.2 12.6 272 41-356 151-454 (531)
14 TIGR00475 selB selenocysteine- 100.0 6.7E-30 1.4E-34 285.4 26.2 237 190-433 1-246 (581)
15 PRK12317 elongation factor 1-a 100.0 1.3E-29 2.9E-34 274.8 24.4 251 188-444 5-310 (425)
16 PRK10512 selenocysteinyl-tRNA- 100.0 2.8E-29 6.1E-34 281.2 27.3 246 190-443 1-259 (614)
17 TIGR01394 TypA_BipA GTP-bindin 100.0 6.3E-29 1.4E-33 277.1 26.5 251 190-444 2-288 (594)
18 COG5256 TEF1 Translation elong 100.0 1.2E-28 2.6E-33 254.3 24.5 254 187-446 5-318 (428)
19 PRK12736 elongation factor Tu; 100.0 1.1E-28 2.4E-33 264.6 24.9 252 186-444 9-297 (394)
20 PTZ00141 elongation factor 1- 100.0 1.8E-28 3.8E-33 266.1 24.9 251 187-443 5-317 (446)
21 PRK12735 elongation factor Tu; 100.0 1.7E-28 3.6E-33 263.3 24.1 251 187-444 10-299 (396)
22 TIGR00483 EF-1_alpha translati 100.0 2.5E-28 5.4E-33 264.8 25.1 252 187-444 5-312 (426)
23 PRK10218 GTP-binding protein; 100.0 4.4E-28 9.5E-33 270.1 27.0 252 187-442 3-290 (607)
24 TIGR01393 lepA GTP-binding pro 100.0 1E-27 2.3E-32 268.0 29.4 296 189-519 3-325 (595)
25 CHL00071 tufA elongation facto 100.0 4.6E-28 1E-32 261.0 25.2 252 187-444 10-307 (409)
26 PLN03127 Elongation factor Tu; 100.0 6.2E-28 1.4E-32 261.5 24.7 250 187-443 59-349 (447)
27 PRK00049 elongation factor Tu; 100.0 9.5E-28 2.1E-32 257.4 24.6 251 187-444 10-299 (396)
28 PLN00043 elongation factor 1-a 100.0 1.2E-27 2.6E-32 259.5 24.7 251 187-443 5-317 (447)
29 PLN03126 Elongation factor Tu; 100.0 1.5E-27 3.2E-32 259.9 25.5 251 187-444 79-376 (478)
30 TIGR00485 EF-Tu translation el 100.0 1.1E-27 2.4E-32 257.1 23.2 252 187-443 10-296 (394)
31 PRK05433 GTP-binding protein L 100.0 3.3E-27 7.1E-32 264.2 28.0 298 188-519 6-329 (600)
32 TIGR02034 CysN sulfate adenyly 100.0 9.7E-27 2.1E-31 250.4 25.0 250 190-445 1-301 (406)
33 PTZ00327 eukaryotic translatio 100.0 5.5E-27 1.2E-31 253.7 22.8 251 188-444 33-351 (460)
34 KOG0462 Elongation factor-type 99.9 2.6E-27 5.7E-32 249.4 18.2 249 187-442 58-330 (650)
35 COG1159 Era GTPase [General fu 99.9 1.6E-27 3.4E-32 237.9 14.9 247 187-450 4-286 (298)
36 COG1217 TypA Predicted membran 99.9 2.1E-26 4.6E-31 238.3 22.6 248 188-441 4-289 (603)
37 TIGR03680 eif2g_arch translati 99.9 3.6E-26 7.9E-31 246.1 22.9 251 188-444 3-313 (406)
38 PRK05124 cysN sulfate adenylyl 99.9 5.9E-26 1.3E-30 248.2 24.8 256 187-445 25-329 (474)
39 COG0481 LepA Membrane GTPase L 99.9 5.1E-26 1.1E-30 236.2 20.4 250 187-444 7-283 (603)
40 PRK00741 prfC peptide chain re 99.9 1.3E-24 2.7E-29 239.8 31.7 341 187-573 8-466 (526)
41 TIGR00484 EF-G translation elo 99.9 4.8E-25 1E-29 252.1 28.2 302 187-519 8-438 (689)
42 PRK04000 translation initiatio 99.9 2E-25 4.4E-30 240.3 23.5 253 187-445 7-319 (411)
43 PRK05506 bifunctional sulfate 99.9 1.8E-25 3.9E-30 253.4 24.0 253 188-445 23-325 (632)
44 PRK12739 elongation factor G; 99.9 8E-25 1.7E-29 250.1 27.9 300 187-517 6-435 (691)
45 COG3276 SelB Selenocysteine-sp 99.9 2.8E-25 6E-30 231.0 21.8 234 191-433 2-241 (447)
46 PRK00007 elongation factor G; 99.9 8.9E-25 1.9E-29 249.7 28.1 301 188-519 9-440 (693)
47 PRK15494 era GTPase Era; Provi 99.9 8.5E-26 1.8E-30 237.4 17.9 245 187-450 50-330 (339)
48 PRK13351 elongation factor G; 99.9 1.4E-24 3E-29 248.6 25.9 299 188-517 7-434 (687)
49 TIGR00503 prfC peptide chain r 99.9 5.9E-24 1.3E-28 234.5 27.5 301 187-520 9-426 (527)
50 COG2895 CysN GTPases - Sulfate 99.9 3.3E-24 7.1E-29 216.0 20.7 252 187-446 4-308 (431)
51 PRK12740 elongation factor G; 99.9 5.4E-24 1.2E-28 243.3 24.5 294 195-519 1-419 (668)
52 TIGR00436 era GTP-binding prot 99.9 2.7E-24 5.9E-29 219.5 16.9 233 191-442 2-270 (270)
53 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.7E-23 3.6E-28 196.7 17.3 162 190-351 1-165 (168)
54 KOG0458 Elongation factor 1 al 99.9 6E-23 1.3E-27 218.9 21.2 324 188-534 176-566 (603)
55 PRK00089 era GTPase Era; Revie 99.9 7.9E-24 1.7E-28 218.4 14.0 243 188-449 4-282 (292)
56 PF00009 GTP_EFTU: Elongation 99.9 7.4E-24 1.6E-28 204.6 11.9 162 188-350 2-185 (188)
57 COG0050 TufB GTPases - transla 99.9 6.2E-23 1.3E-27 202.1 17.0 251 188-445 11-298 (394)
58 COG0480 FusA Translation elong 99.9 4.8E-22 1E-26 223.2 25.6 313 186-529 7-457 (697)
59 PRK07560 elongation factor EF- 99.9 1.7E-22 3.8E-27 232.2 20.8 302 188-518 19-421 (731)
60 COG1160 Predicted GTPases [Gen 99.9 2.4E-22 5.2E-27 211.1 18.2 163 187-354 176-353 (444)
61 cd04171 SelB SelB subfamily. 99.9 3.7E-22 8E-27 186.4 16.9 156 191-349 2-163 (164)
62 TIGR03156 GTP_HflX GTP-binding 99.9 2.5E-22 5.4E-27 211.7 15.6 211 123-349 115-349 (351)
63 TIGR00490 aEF-2 translation el 99.9 6.6E-22 1.4E-26 226.8 20.2 303 188-519 18-422 (720)
64 PF11987 IF-2: Translation-ini 99.9 1.5E-23 3.2E-28 183.2 4.4 89 484-573 13-101 (108)
65 KOG0461 Selenocysteine-specifi 99.9 8.8E-22 1.9E-26 197.3 17.1 237 189-428 7-268 (522)
66 KOG0460 Mitochondrial translat 99.9 6.7E-22 1.4E-26 198.1 15.9 252 187-445 52-342 (449)
67 COG1160 Predicted GTPases [Gen 99.9 5.9E-22 1.3E-26 208.1 14.3 151 190-351 4-164 (444)
68 cd01889 SelB_euk SelB subfamil 99.9 2E-21 4.3E-26 188.1 15.2 162 190-351 1-185 (192)
69 cd01890 LepA LepA subfamily. 99.9 2E-21 4.3E-26 185.0 14.7 156 190-350 1-175 (179)
70 cd01884 EF_Tu EF-Tu subfamily. 99.9 3.3E-21 7.1E-26 187.3 15.8 147 190-341 3-172 (195)
71 PF02421 FeoB_N: Ferrous iron 99.9 5.6E-22 1.2E-26 184.5 9.4 147 190-347 1-156 (156)
72 COG5258 GTPBP1 GTPase [General 99.9 3.2E-20 7E-25 188.6 21.8 240 184-427 112-417 (527)
73 cd04120 Rab12 Rab12 subfamily. 99.9 5.4E-21 1.2E-25 186.9 15.1 155 191-351 2-162 (202)
74 cd01891 TypA_BipA TypA (tyrosi 99.9 6.4E-21 1.4E-25 184.9 15.3 157 189-346 2-176 (194)
75 cd04166 CysN_ATPS CysN_ATPS su 99.9 5E-21 1.1E-25 188.0 13.7 152 191-343 1-185 (208)
76 cd04124 RabL2 RabL2 subfamily. 99.8 1.7E-20 3.7E-25 176.2 16.0 153 190-351 1-157 (161)
77 COG4108 PrfC Peptide chain rel 99.8 2.2E-20 4.8E-25 193.0 18.1 253 187-441 10-379 (528)
78 cd01864 Rab19 Rab19 subfamily. 99.8 2.2E-20 4.8E-25 175.6 16.3 155 189-349 3-163 (165)
79 KOG0084 GTPase Rab1/YPT1, smal 99.8 1.1E-20 2.4E-25 177.2 13.5 155 188-351 8-171 (205)
80 cd04119 RJL RJL (RabJ-Like) su 99.8 2.9E-20 6.3E-25 174.0 16.1 152 190-350 1-165 (168)
81 cd01865 Rab3 Rab3 subfamily. 99.8 3.8E-20 8.2E-25 174.3 16.9 152 190-350 2-161 (165)
82 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 3.9E-20 8.4E-25 180.4 17.4 154 190-351 1-167 (201)
83 cd01867 Rab8_Rab10_Rab13_like 99.8 2.8E-20 6.2E-25 175.5 15.9 157 189-351 3-164 (167)
84 COG5257 GCD11 Translation init 99.8 5.7E-20 1.2E-24 183.3 17.6 235 188-427 9-296 (415)
85 cd04106 Rab23_lke Rab23-like s 99.8 4.6E-20 1E-24 172.3 16.1 154 190-349 1-160 (162)
86 cd04138 H_N_K_Ras_like H-Ras/N 99.8 2.3E-20 4.9E-25 173.7 13.6 152 190-349 2-159 (162)
87 cd04128 Spg1 Spg1p. Spg1p (se 99.8 3.5E-20 7.5E-25 178.2 15.2 159 190-351 1-165 (182)
88 cd01894 EngA1 EngA1 subfamily. 99.8 3.2E-20 7E-25 171.8 14.5 146 193-349 1-155 (157)
89 cd04149 Arf6 Arf6 subfamily. 99.8 2.9E-20 6.3E-25 176.3 14.4 155 187-349 7-167 (168)
90 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 3.4E-20 7.4E-25 174.4 14.8 156 190-351 3-163 (166)
91 cd01897 NOG NOG1 is a nucleola 99.8 5E-20 1.1E-24 173.3 15.7 152 190-350 1-166 (168)
92 PRK03003 GTP-binding protein D 99.8 3.8E-20 8.2E-25 203.3 17.2 162 188-354 210-384 (472)
93 cd00881 GTP_translation_factor 99.8 5.2E-20 1.1E-24 175.9 16.1 159 191-350 1-185 (189)
94 cd04122 Rab14 Rab14 subfamily. 99.8 4.8E-20 1E-24 173.6 15.6 152 190-350 3-162 (166)
95 cd01861 Rab6 Rab6 subfamily. 99.8 5.2E-20 1.1E-24 171.8 15.4 154 190-349 1-159 (161)
96 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3E-20 6.4E-25 174.7 13.5 156 191-349 1-166 (167)
97 cd04154 Arl2 Arl2 subfamily. 99.8 4E-20 8.6E-25 175.7 14.5 154 187-348 12-171 (173)
98 cd04121 Rab40 Rab40 subfamily. 99.8 1.2E-19 2.6E-24 175.6 18.0 154 188-351 5-166 (189)
99 cd04145 M_R_Ras_like M-Ras/R-R 99.8 5.3E-20 1.1E-24 172.1 14.9 153 190-350 3-162 (164)
100 cd04157 Arl6 Arl6 subfamily. 99.8 5.1E-20 1.1E-24 171.9 14.7 152 191-349 1-161 (162)
101 cd00877 Ran Ran (Ras-related n 99.8 5.9E-20 1.3E-24 173.7 15.3 154 190-351 1-158 (166)
102 cd01868 Rab11_like Rab11-like. 99.8 6.3E-20 1.4E-24 172.3 15.4 154 190-350 4-163 (165)
103 cd01883 EF1_alpha Eukaryotic e 99.8 3.1E-20 6.8E-25 183.8 14.0 151 191-342 1-195 (219)
104 cd04134 Rho3 Rho3 subfamily. 99.8 3.9E-20 8.5E-25 178.7 14.3 162 190-352 1-174 (189)
105 TIGR03594 GTPase_EngA ribosome 99.8 5.3E-20 1.2E-24 200.0 17.1 160 188-353 171-345 (429)
106 PLN00116 translation elongatio 99.8 3.8E-19 8.2E-24 207.0 25.1 303 188-519 18-520 (843)
107 cd04113 Rab4 Rab4 subfamily. 99.8 6.6E-20 1.4E-24 171.4 15.2 151 190-349 1-159 (161)
108 cd04127 Rab27A Rab27a subfamil 99.8 8.6E-20 1.9E-24 174.0 16.1 153 189-350 4-175 (180)
109 cd04136 Rap_like Rap-like subf 99.8 3E-20 6.6E-25 173.6 12.7 153 190-349 2-160 (163)
110 cd01866 Rab2 Rab2 subfamily. 99.8 1.2E-19 2.6E-24 171.6 16.8 153 190-351 5-165 (168)
111 cd01874 Cdc42 Cdc42 subfamily. 99.8 3.7E-20 8E-25 176.8 13.3 157 190-350 2-173 (175)
112 PRK03003 GTP-binding protein D 99.8 7.4E-20 1.6E-24 201.0 17.6 153 188-351 37-198 (472)
113 cd04150 Arf1_5_like Arf1-Arf5- 99.8 6.9E-20 1.5E-24 172.0 14.7 151 190-348 1-157 (159)
114 cd04175 Rap1 Rap1 subgroup. T 99.8 9E-20 1.9E-24 171.2 15.3 154 190-350 2-161 (164)
115 smart00173 RAS Ras subfamily o 99.8 5.4E-20 1.2E-24 172.4 13.6 155 190-351 1-161 (164)
116 cd04132 Rho4_like Rho4-like su 99.8 1.3E-19 2.8E-24 174.1 16.4 160 190-352 1-167 (187)
117 smart00177 ARF ARF-like small 99.8 1.1E-19 2.3E-24 173.5 15.6 155 188-350 12-172 (175)
118 cd04109 Rab28 Rab28 subfamily. 99.8 2.3E-19 5E-24 177.0 18.5 157 190-352 1-166 (215)
119 smart00175 RAB Rab subfamily o 99.8 1.7E-19 3.8E-24 168.5 16.6 152 190-351 1-161 (164)
120 cd04151 Arl1 Arl1 subfamily. 99.8 7.6E-20 1.6E-24 170.9 14.1 151 191-349 1-157 (158)
121 KOG0092 GTPase Rab5/YPT51 and 99.8 5.8E-20 1.3E-24 171.8 13.1 155 188-351 4-166 (200)
122 cd04140 ARHI_like ARHI subfami 99.8 7.8E-20 1.7E-24 172.2 14.2 154 190-350 2-163 (165)
123 cd04133 Rop_like Rop subfamily 99.8 9E-20 2E-24 174.4 14.8 161 190-351 2-172 (176)
124 cd01895 EngA2 EngA2 subfamily. 99.8 1.8E-19 4E-24 169.0 16.6 157 188-349 1-172 (174)
125 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 6.8E-20 1.5E-24 171.2 13.3 159 187-351 20-184 (221)
126 cd01875 RhoG RhoG subfamily. 99.8 8.1E-20 1.8E-24 176.9 14.4 163 188-351 2-176 (191)
127 PLN00223 ADP-ribosylation fact 99.8 1.8E-19 4E-24 173.0 16.5 155 188-350 16-176 (181)
128 KOG0394 Ras-related GTPase [Ge 99.8 4.3E-20 9.3E-25 170.9 11.4 162 187-351 7-177 (210)
129 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 1.5E-19 3.2E-24 172.0 15.5 154 189-350 2-162 (172)
130 PTZ00369 Ras-like protein; Pro 99.8 1.2E-19 2.5E-24 175.3 14.8 158 187-351 3-166 (189)
131 cd04144 Ras2 Ras2 subfamily. 99.8 1.2E-19 2.7E-24 175.3 15.0 153 191-351 1-162 (190)
132 cd04112 Rab26 Rab26 subfamily. 99.8 2.8E-19 6.1E-24 172.9 17.4 157 190-352 1-163 (191)
133 cd04116 Rab9 Rab9 subfamily. 99.8 2.3E-19 5E-24 169.4 16.4 153 189-349 5-168 (170)
134 cd01862 Rab7 Rab7 subfamily. 99.8 2.3E-19 5E-24 169.1 16.4 154 190-351 1-166 (172)
135 cd01879 FeoB Ferrous iron tran 99.8 7.6E-20 1.6E-24 169.8 12.6 147 194-351 1-156 (158)
136 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.9E-19 4E-24 173.1 15.7 160 188-351 2-169 (183)
137 cd04117 Rab15 Rab15 subfamily. 99.8 2E-19 4.3E-24 169.1 14.9 151 190-349 1-159 (161)
138 cd04135 Tc10 TC10 subfamily. 99.8 1.2E-19 2.6E-24 171.9 13.5 159 190-350 1-172 (174)
139 cd00879 Sar1 Sar1 subfamily. 99.8 1.8E-19 4E-24 173.5 14.9 159 187-349 17-188 (190)
140 cd01888 eIF2_gamma eIF2-gamma 99.8 1.6E-19 3.4E-24 176.7 14.6 157 190-349 1-196 (203)
141 PRK00093 GTP-binding protein D 99.8 3.1E-19 6.8E-24 194.3 18.2 161 187-352 171-344 (435)
142 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 3E-19 6.6E-24 169.6 15.7 156 191-351 2-164 (170)
143 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2E-19 4.4E-24 167.8 14.1 153 191-349 1-159 (160)
144 cd04114 Rab30 Rab30 subfamily. 99.8 4.2E-19 9E-24 167.2 16.3 152 189-349 7-166 (169)
145 KOG0465 Mitochondrial elongati 99.8 5.9E-19 1.3E-23 188.4 19.2 302 186-519 36-468 (721)
146 cd04164 trmE TrmE (MnmE, ThdF, 99.8 3.4E-19 7.3E-24 164.7 15.4 146 189-350 1-155 (157)
147 smart00174 RHO Rho (Ras homolo 99.8 2.2E-19 4.8E-24 170.1 14.4 158 192-350 1-170 (174)
148 PRK04213 GTP-binding protein; 99.8 3.7E-19 8.1E-24 173.1 16.3 155 188-350 8-190 (201)
149 cd04110 Rab35 Rab35 subfamily. 99.8 4.2E-19 9.2E-24 172.9 16.6 157 189-351 6-166 (199)
150 PTZ00133 ADP-ribosylation fact 99.8 4.1E-19 8.8E-24 170.7 16.3 156 187-350 15-176 (182)
151 cd04142 RRP22 RRP22 subfamily. 99.8 1.7E-19 3.6E-24 175.8 13.6 156 190-351 1-173 (198)
152 cd01860 Rab5_related Rab5-rela 99.8 4.1E-19 8.8E-24 166.1 15.7 152 190-350 2-161 (163)
153 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2.6E-19 5.6E-24 170.5 14.6 153 189-349 15-173 (174)
154 PLN03071 GTP-binding nuclear p 99.8 2.7E-19 5.9E-24 177.1 15.2 156 187-351 11-171 (219)
155 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.9E-19 4.2E-24 167.7 13.3 151 191-349 1-157 (158)
156 KOG0078 GTP-binding protein SE 99.8 2.5E-19 5.5E-24 170.4 14.1 158 187-350 10-172 (207)
157 cd01898 Obg Obg subfamily. Th 99.8 3.1E-19 6.6E-24 168.1 14.6 152 191-349 2-168 (170)
158 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 3.7E-19 8.1E-24 171.1 15.4 162 188-350 4-178 (182)
159 cd04126 Rab20 Rab20 subfamily. 99.8 1.9E-19 4.1E-24 178.1 13.7 158 190-351 1-189 (220)
160 PTZ00416 elongation factor 2; 99.8 1.9E-18 4.1E-23 200.9 24.2 115 188-302 18-157 (836)
161 cd01863 Rab18 Rab18 subfamily. 99.8 3.9E-19 8.5E-24 166.0 15.1 151 190-349 1-159 (161)
162 TIGR03594 GTPase_EngA ribosome 99.8 3.1E-19 6.7E-24 194.0 16.5 150 191-351 1-159 (429)
163 cd04131 Rnd Rnd subfamily. Th 99.8 4.6E-19 1E-23 169.8 15.6 160 190-350 2-174 (178)
164 cd04158 ARD1 ARD1 subfamily. 99.8 3.3E-19 7.2E-24 168.8 14.5 153 191-350 1-159 (169)
165 cd04101 RabL4 RabL4 (Rab-like4 99.8 8.1E-19 1.8E-23 164.4 16.9 155 190-350 1-162 (164)
166 cd04125 RabA_like RabA-like su 99.8 6.7E-19 1.5E-23 169.6 16.7 153 190-351 1-161 (188)
167 cd01871 Rac1_like Rac1-like su 99.8 2.8E-19 6.1E-24 170.6 13.7 159 190-349 2-172 (174)
168 cd01878 HflX HflX subfamily. 99.8 5.9E-19 1.3E-23 172.2 15.8 150 188-349 40-202 (204)
169 PRK00093 GTP-binding protein D 99.8 4.9E-19 1.1E-23 192.9 16.7 149 190-349 2-159 (435)
170 cd04123 Rab21 Rab21 subfamily. 99.8 7.2E-19 1.6E-23 163.6 15.5 152 190-350 1-160 (162)
171 cd04161 Arl2l1_Arl13_like Arl2 99.8 6.6E-19 1.4E-23 166.7 15.3 154 191-349 1-166 (167)
172 cd04139 RalA_RalB RalA/RalB su 99.8 6E-19 1.3E-23 164.6 14.8 152 190-351 1-161 (164)
173 smart00178 SAR Sar1p-like memb 99.8 8.3E-19 1.8E-23 168.8 16.1 159 187-349 15-182 (184)
174 cd04165 GTPBP1_like GTPBP1-lik 99.8 5.1E-19 1.1E-23 175.6 15.0 158 191-349 1-220 (224)
175 cd04118 Rab24 Rab24 subfamily. 99.8 7.7E-19 1.7E-23 169.7 15.8 156 190-351 1-165 (193)
176 cd04159 Arl10_like Arl10-like 99.8 8.6E-19 1.9E-23 161.7 15.3 151 192-349 2-158 (159)
177 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 8E-19 1.7E-23 174.8 16.1 162 189-351 13-187 (232)
178 cd04176 Rap2 Rap2 subgroup. T 99.8 3.9E-19 8.4E-24 166.6 13.0 152 190-349 2-160 (163)
179 cd01870 RhoA_like RhoA-like su 99.8 4.7E-19 1E-23 168.0 13.4 158 190-350 2-173 (175)
180 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.4E-18 3.1E-23 164.4 16.5 154 189-350 2-167 (170)
181 PLN03110 Rab GTPase; Provision 99.8 1.5E-18 3.2E-23 171.5 16.9 156 188-351 11-173 (216)
182 cd04143 Rhes_like Rhes_like su 99.8 8.4E-19 1.8E-23 176.6 15.2 155 190-354 1-173 (247)
183 cd01892 Miro2 Miro2 subfamily. 99.8 6E-19 1.3E-23 167.3 13.3 159 187-351 2-165 (169)
184 cd01893 Miro1 Miro1 subfamily. 99.8 9.1E-19 2E-23 165.2 14.3 156 190-350 1-162 (166)
185 cd04177 RSR1 RSR1 subgroup. R 99.8 6.1E-19 1.3E-23 166.6 13.1 155 190-350 2-162 (168)
186 TIGR03598 GTPase_YsxC ribosome 99.8 1.3E-18 2.7E-23 166.6 15.4 150 186-341 15-179 (179)
187 cd00157 Rho Rho (Ras homology) 99.8 5.9E-19 1.3E-23 166.2 12.9 159 190-349 1-170 (171)
188 cd04168 TetM_like Tet(M)-like 99.8 1.1E-18 2.5E-23 174.6 15.4 159 191-350 1-233 (237)
189 cd00154 Rab Rab family. Rab G 99.8 1.6E-18 3.4E-23 159.7 15.2 150 190-348 1-158 (159)
190 smart00176 RAN Ran (Ras-relate 99.8 1.2E-18 2.6E-23 170.0 15.1 149 195-351 1-153 (200)
191 cd04111 Rab39 Rab39 subfamily. 99.8 1.6E-18 3.4E-23 170.7 15.9 156 190-351 3-165 (211)
192 PRK09518 bifunctional cytidyla 99.8 1E-18 2.3E-23 200.6 16.8 161 188-353 449-622 (712)
193 cd04155 Arl3 Arl3 subfamily. 99.8 1E-18 2.3E-23 165.3 13.7 155 187-349 12-172 (173)
194 KOG0098 GTPase Rab2, small G p 99.8 7.8E-19 1.7E-23 162.9 12.3 155 189-349 6-165 (216)
195 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 8.8E-19 1.9E-23 173.5 13.6 160 190-351 2-175 (222)
196 cd04137 RheB Rheb (Ras Homolog 99.8 1.5E-18 3.3E-23 165.5 14.7 159 190-355 2-166 (180)
197 cd04147 Ras_dva Ras-dva subfam 99.8 1.1E-18 2.4E-23 169.8 13.7 156 191-352 1-163 (198)
198 PRK12299 obgE GTPase CgtA; Rev 99.8 2.6E-18 5.6E-23 180.0 17.1 160 187-352 156-328 (335)
199 KOG1423 Ras-like GTPase ERA [C 99.8 1.8E-18 3.8E-23 172.0 14.7 242 184-439 67-374 (379)
200 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.6E-18 3.5E-23 163.5 14.0 151 192-348 2-162 (164)
201 PLN03118 Rab family protein; P 99.8 2.4E-18 5.2E-23 169.1 15.7 157 188-351 13-176 (211)
202 PRK09518 bifunctional cytidyla 99.8 2.1E-18 4.6E-23 198.0 17.6 153 188-351 274-435 (712)
203 cd04130 Wrch_1 Wrch-1 subfamil 99.8 2.4E-18 5.1E-23 163.4 14.9 158 190-349 1-171 (173)
204 PRK11058 GTPase HflX; Provisio 99.8 2.1E-18 4.6E-23 186.1 16.1 151 189-351 197-361 (426)
205 PLN03108 Rab family protein; P 99.8 4.2E-18 9.1E-23 167.5 16.1 154 189-351 6-167 (210)
206 TIGR00231 small_GTP small GTP- 99.8 2.6E-18 5.6E-23 157.4 13.6 150 190-348 2-160 (161)
207 cd01886 EF-G Elongation factor 99.8 2.8E-18 6.1E-23 174.8 14.1 140 191-335 1-158 (270)
208 PRK15467 ethanolamine utilizat 99.8 2.7E-18 5.9E-23 161.3 12.6 140 191-351 3-146 (158)
209 cd04146 RERG_RasL11_like RERG/ 99.8 2.1E-18 4.6E-23 162.1 11.9 153 191-350 1-162 (165)
210 KOG0459 Polypeptide release fa 99.8 4E-18 8.7E-23 174.6 13.8 260 182-446 72-392 (501)
211 TIGR02528 EutP ethanolamine ut 99.8 3.8E-18 8.2E-23 156.4 12.4 133 191-348 2-141 (142)
212 cd00876 Ras Ras family. The R 99.8 6.2E-18 1.4E-22 156.9 13.9 149 191-349 1-158 (160)
213 cd01881 Obg_like The Obg-like 99.8 4E-18 8.6E-23 161.1 12.7 150 194-349 1-174 (176)
214 PRK12298 obgE GTPase CgtA; Rev 99.8 7E-18 1.5E-22 180.0 15.9 160 188-352 158-333 (390)
215 cd03702 IF2_mtIF2_II This fami 99.8 6.3E-18 1.4E-22 144.1 12.2 93 365-457 2-94 (95)
216 cd04163 Era Era subfamily. Er 99.8 1.6E-17 3.4E-22 154.2 16.0 156 188-349 2-166 (168)
217 PF00025 Arf: ADP-ribosylation 99.8 1.3E-17 2.8E-22 159.3 15.3 157 187-350 12-174 (175)
218 PRK00454 engB GTP-binding prot 99.8 2.3E-17 5E-22 159.4 16.8 156 187-351 22-193 (196)
219 PF00071 Ras: Ras family; Int 99.8 7E-18 1.5E-22 157.7 12.6 152 191-351 1-160 (162)
220 cd01885 EF2 EF2 (for archaea a 99.7 6.1E-18 1.3E-22 167.4 12.1 113 190-302 1-138 (222)
221 cd04129 Rho2 Rho2 subfamily. 99.7 8.3E-18 1.8E-22 162.1 12.6 158 190-351 2-172 (187)
222 TIGR02729 Obg_CgtA Obg family 99.7 1.2E-17 2.5E-22 174.8 14.7 156 188-350 156-327 (329)
223 KOG0080 GTPase Rab18, small G 99.7 5.3E-18 1.1E-22 153.4 9.7 156 189-350 11-172 (209)
224 cd00880 Era_like Era (E. coli 99.7 2E-17 4.3E-22 151.6 13.8 154 194-350 1-162 (163)
225 cd04148 RGK RGK subfamily. Th 99.7 2.1E-17 4.5E-22 163.9 14.9 156 190-353 1-164 (221)
226 PRK12297 obgE GTPase CgtA; Rev 99.7 2.9E-17 6.3E-22 176.4 17.1 154 189-352 158-327 (424)
227 PRK12296 obgE GTPase CgtA; Rev 99.7 3.3E-17 7.3E-22 178.0 16.3 161 187-355 157-343 (500)
228 cd04103 Centaurin_gamma Centau 99.7 1.5E-17 3.2E-22 156.3 11.8 149 190-349 1-156 (158)
229 KOG0095 GTPase Rab30, small G 99.7 2.8E-17 6.1E-22 146.8 12.0 153 189-349 7-166 (213)
230 COG0218 Predicted GTPase [Gene 99.7 9.7E-17 2.1E-21 152.8 15.9 157 188-351 23-196 (200)
231 PRK09554 feoB ferrous iron tra 99.7 4.5E-17 9.8E-22 186.8 16.3 153 188-351 2-167 (772)
232 cd01873 RhoBTB RhoBTB subfamil 99.7 3.2E-17 7E-22 159.4 12.9 158 189-349 2-193 (195)
233 KOG0093 GTPase Rab3, small G p 99.7 2.7E-17 5.8E-22 146.8 11.1 153 190-351 22-182 (193)
234 cd04167 Snu114p Snu114p subfam 99.7 3.5E-17 7.5E-22 161.3 13.1 113 190-302 1-136 (213)
235 KOG0079 GTP-binding protein H- 99.7 3.9E-17 8.4E-22 145.9 11.3 153 190-352 9-169 (198)
236 KOG0087 GTPase Rab11/YPT3, sma 99.7 2.6E-17 5.7E-22 156.0 10.7 158 187-350 12-174 (222)
237 TIGR00437 feoB ferrous iron tr 99.7 4.8E-17 1E-21 182.4 13.2 145 196-351 1-154 (591)
238 cd04169 RF3 RF3 subfamily. Pe 99.7 1.3E-16 2.9E-21 162.4 14.3 117 189-306 2-140 (267)
239 KOG0086 GTPase Rab4, small G p 99.7 9.1E-17 2E-21 144.2 11.1 154 189-348 9-167 (214)
240 PTZ00132 GTP-binding nuclear p 99.7 4.6E-16 9.9E-21 153.3 17.1 156 187-351 7-167 (215)
241 cd03701 IF2_IF5B_II IF2_IF5B_I 99.7 2.2E-16 4.8E-21 135.1 12.0 93 365-457 2-94 (95)
242 cd00882 Ras_like_GTPase Ras-li 99.7 2E-16 4.4E-21 142.9 11.6 150 194-348 1-156 (157)
243 COG2229 Predicted GTPase [Gene 99.7 1E-15 2.2E-20 142.8 16.0 159 185-350 6-176 (187)
244 cd04170 EF-G_bact Elongation f 99.7 2.3E-16 5E-21 160.9 12.3 148 191-345 1-166 (268)
245 cd01876 YihA_EngB The YihA (En 99.7 1.2E-15 2.6E-20 142.0 15.7 152 192-349 2-168 (170)
246 cd01896 DRG The developmentall 99.7 6.8E-16 1.5E-20 154.2 14.5 150 191-354 2-228 (233)
247 cd04102 RabL3 RabL3 (Rab-like3 99.7 9.2E-16 2E-20 149.9 14.2 148 190-339 1-177 (202)
248 cd04105 SR_beta Signal recogni 99.7 1.6E-15 3.4E-20 148.5 14.6 159 190-349 1-202 (203)
249 KOG0075 GTP-binding ADP-ribosy 99.6 1.2E-15 2.7E-20 136.3 12.1 158 189-353 20-183 (186)
250 COG0370 FeoB Fe2+ transport sy 99.6 1.1E-15 2.3E-20 167.8 13.3 153 189-352 3-164 (653)
251 KOG0464 Elongation factor G [T 99.6 1.1E-16 2.4E-21 163.8 4.9 257 187-445 35-420 (753)
252 KOG0091 GTPase Rab39, small G 99.6 8.5E-16 1.8E-20 139.6 10.0 156 189-350 8-171 (213)
253 PF10662 PduV-EutP: Ethanolami 99.6 1.1E-15 2.3E-20 139.6 9.4 135 190-348 2-142 (143)
254 KOG0073 GTP-binding ADP-ribosy 99.6 6.8E-15 1.5E-19 134.1 14.4 156 188-350 15-176 (185)
255 KOG0463 GTP-binding protein GP 99.6 3.4E-15 7.3E-20 151.6 13.7 238 184-424 128-433 (641)
256 COG1100 GTPase SAR1 and relate 99.6 4.9E-15 1.1E-19 145.8 14.4 162 190-351 6-184 (219)
257 KOG0070 GTP-binding ADP-ribosy 99.6 5.4E-15 1.2E-19 138.2 11.2 158 186-351 14-177 (181)
258 KOG0083 GTPase Rab26/Rab37, sm 99.6 2E-15 4.4E-20 132.6 7.3 180 194-381 2-187 (192)
259 PF01926 MMR_HSR1: 50S ribosom 99.6 5.4E-15 1.2E-19 131.2 10.2 106 191-298 1-116 (116)
260 COG2262 HflX GTPases [General 99.6 9.8E-15 2.1E-19 151.8 13.3 155 186-352 189-356 (411)
261 KOG0097 GTPase Rab14, small G 99.6 8.2E-15 1.8E-19 129.9 10.4 148 189-345 11-166 (215)
262 KOG0395 Ras-related GTPase [Ge 99.6 1.9E-14 4.1E-19 139.8 13.4 159 188-353 2-166 (196)
263 COG1084 Predicted GTPase [Gene 99.6 1.7E-14 3.7E-19 145.9 13.0 158 184-350 163-334 (346)
264 KOG0081 GTPase Rab27, small G 99.6 3.4E-15 7.3E-20 135.0 6.7 151 190-349 10-178 (219)
265 KOG1489 Predicted GTP-binding 99.6 1.9E-14 4E-19 144.4 12.2 155 187-349 194-364 (366)
266 KOG0393 Ras-related small GTPa 99.6 1.1E-14 2.4E-19 139.3 9.9 160 188-351 3-178 (198)
267 KOG0088 GTPase Rab21, small G 99.6 3.2E-15 6.9E-20 135.1 5.7 156 188-349 12-172 (218)
268 cd04104 p47_IIGP_like p47 (47- 99.6 3.6E-14 7.7E-19 138.2 13.5 158 189-350 1-182 (197)
269 PLN00023 GTP-binding protein; 99.5 3.2E-14 7E-19 146.4 12.5 119 185-303 17-165 (334)
270 KOG1143 Predicted translation 99.5 1.5E-13 3.2E-18 139.7 14.0 238 189-427 167-471 (591)
271 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.9E-13 4.1E-18 132.8 14.2 160 190-353 1-185 (196)
272 COG1163 DRG Predicted GTPase [ 99.5 1E-13 2.3E-18 139.6 12.5 153 190-356 64-293 (365)
273 PRK09866 hypothetical protein; 99.5 4.3E-13 9.3E-18 146.9 15.7 113 237-351 230-352 (741)
274 PTZ00099 rab6; Provisional 99.5 3.6E-13 7.8E-18 128.8 13.2 129 214-351 5-141 (176)
275 PF08477 Miro: Miro-like prote 99.5 5.5E-14 1.2E-18 124.7 6.7 109 191-300 1-119 (119)
276 KOG0076 GTP-binding ADP-ribosy 99.4 2E-13 4.3E-18 125.8 8.1 161 188-352 16-187 (197)
277 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.2E-12 2.5E-17 130.3 14.2 144 186-340 36-184 (225)
278 cd01899 Ygr210 Ygr210 subfamil 99.4 8.5E-13 1.8E-17 137.3 13.2 81 192-272 1-111 (318)
279 COG3596 Predicted GTPase [Gene 99.4 4.9E-13 1.1E-17 132.5 10.2 165 186-350 36-220 (296)
280 KOG0466 Translation initiation 99.4 4E-13 8.7E-18 133.5 8.9 206 189-398 38-293 (466)
281 COG0536 Obg Predicted GTPase [ 99.4 1.4E-12 3E-17 132.7 12.8 158 190-354 160-335 (369)
282 KOG0071 GTP-binding ADP-ribosy 99.4 3.9E-12 8.4E-17 113.2 12.8 154 189-350 17-176 (180)
283 cd03703 aeIF5B_II aeIF5B_II: T 99.3 9.3E-12 2E-16 108.1 11.4 89 365-454 2-106 (110)
284 KOG0074 GTP-binding ADP-ribosy 99.3 5.2E-12 1.1E-16 112.5 8.2 156 187-349 15-176 (185)
285 KOG0090 Signal recognition par 99.3 1.7E-11 3.8E-16 116.9 11.9 157 188-349 37-236 (238)
286 PRK09602 translation-associate 99.3 2.4E-11 5.2E-16 130.2 14.5 82 190-271 2-113 (396)
287 PF09439 SRPRB: Signal recogni 99.3 5.8E-12 1.3E-16 120.0 7.8 114 188-306 2-129 (181)
288 KOG4252 GTP-binding protein [S 99.3 1.1E-12 2.4E-17 121.0 1.8 155 187-350 18-179 (246)
289 cd01850 CDC_Septin CDC/Septin. 99.3 3.2E-11 7E-16 123.5 12.4 112 190-303 5-157 (276)
290 KOG0467 Translation elongation 99.3 1.5E-11 3.3E-16 135.0 10.4 113 188-301 8-136 (887)
291 KOG0072 GTP-binding ADP-ribosy 99.2 2.8E-11 6E-16 108.3 9.2 156 188-351 17-178 (182)
292 PTZ00258 GTP-binding protein; 99.2 1.3E-10 2.8E-15 123.4 14.4 85 187-271 19-126 (390)
293 COG4917 EutP Ethanolamine util 99.2 3.2E-11 6.8E-16 105.7 7.5 137 190-349 2-143 (148)
294 KOG0468 U5 snRNP-specific prot 99.2 4.3E-11 9.3E-16 129.4 9.9 116 187-302 126-262 (971)
295 KOG1707 Predicted Ras related/ 99.2 2.4E-11 5.1E-16 130.7 7.5 151 186-347 6-170 (625)
296 PRK13768 GTPase; Provisional 99.2 1.3E-10 2.9E-15 117.6 11.4 114 237-350 97-245 (253)
297 cd01853 Toc34_like Toc34-like 99.2 2.9E-10 6.4E-15 114.6 13.5 119 184-303 26-163 (249)
298 PRK09435 membrane ATPase/prote 99.2 2.4E-10 5.1E-15 119.4 13.0 111 235-352 147-260 (332)
299 KOG0096 GTPase Ran/TC4/GSP1 (n 99.2 1.8E-10 3.9E-15 107.9 10.8 154 189-351 10-168 (216)
300 KOG1532 GTPase XAB1, interacts 99.2 1.2E-10 2.6E-15 114.9 9.4 169 184-352 14-264 (366)
301 smart00053 DYNc Dynamin, GTPas 99.1 6.1E-10 1.3E-14 111.3 14.1 128 187-315 24-217 (240)
302 KOG0077 Vesicle coat complex C 99.1 2.2E-10 4.7E-15 105.1 8.8 159 186-348 17-189 (193)
303 TIGR02836 spore_IV_A stage IV 99.1 4.6E-10 1E-14 117.7 12.1 151 190-348 18-233 (492)
304 KOG0410 Predicted GTP binding 99.1 1.7E-10 3.8E-15 116.2 7.9 150 184-350 173-339 (410)
305 KOG3883 Ras family small GTPas 99.1 9.3E-10 2E-14 99.5 11.7 159 187-351 7-174 (198)
306 PF10396 TrmE_N: GTP-binding p 99.1 4.1E-11 8.8E-16 105.0 2.8 47 15-61 60-114 (114)
307 KOG1673 Ras GTPases [General f 99.1 5.6E-10 1.2E-14 101.1 9.9 169 189-358 20-192 (205)
308 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 1.6E-09 3.5E-14 107.7 13.0 158 191-349 1-173 (232)
309 TIGR00991 3a0901s02IAP34 GTP-b 99.1 2.1E-09 4.5E-14 110.4 13.8 116 187-303 36-167 (313)
310 TIGR00750 lao LAO/AO transport 99.0 1.8E-09 3.9E-14 112.1 12.4 111 235-352 125-238 (300)
311 PF00350 Dynamin_N: Dynamin fa 99.0 7E-10 1.5E-14 104.5 8.2 63 237-299 101-168 (168)
312 KOG1490 GTP-binding protein CR 99.0 8.8E-10 1.9E-14 116.7 9.6 159 182-345 161-334 (620)
313 KOG2486 Predicted GTPase [Gene 99.0 1.3E-09 2.7E-14 108.2 8.7 160 186-349 133-313 (320)
314 PF03029 ATP_bind_1: Conserved 99.0 1.4E-09 3E-14 109.1 7.9 113 238-350 92-235 (238)
315 TIGR00073 hypB hydrogenase acc 98.9 2.5E-09 5.4E-14 105.0 9.2 148 188-350 21-205 (207)
316 PF05049 IIGP: Interferon-indu 98.9 2.2E-09 4.7E-14 113.0 9.1 158 188-349 34-215 (376)
317 TIGR00101 ureG urease accessor 98.9 4.5E-09 9.7E-14 102.6 9.8 99 236-350 91-194 (199)
318 COG1703 ArgK Putative periplas 98.9 2.4E-09 5.2E-14 107.7 7.6 163 187-356 49-258 (323)
319 PF04548 AIG1: AIG1 family; I 98.9 4.4E-09 9.5E-14 103.7 8.8 159 190-352 1-186 (212)
320 cd01900 YchF YchF subfamily. 98.9 2.3E-09 5E-14 109.2 6.9 81 192-272 1-104 (274)
321 PRK09601 GTP-binding protein Y 98.9 3.6E-09 7.7E-14 111.4 8.3 82 190-271 3-107 (364)
322 PF03308 ArgK: ArgK protein; 98.9 3.6E-09 7.7E-14 105.2 7.2 156 188-354 28-232 (266)
323 COG0012 Predicted GTPase, prob 98.9 2.2E-08 4.8E-13 104.1 12.8 84 189-272 2-109 (372)
324 COG0378 HypB Ni2+-binding GTPa 98.8 5.6E-09 1.2E-13 99.3 6.7 77 263-350 120-199 (202)
325 KOG0469 Elongation factor 2 [T 98.8 8.2E-09 1.8E-13 108.9 8.0 114 188-301 18-162 (842)
326 KOG4423 GTP-binding protein-li 98.8 8.8E-10 1.9E-14 102.9 0.2 158 190-351 26-193 (229)
327 KOG1486 GTP-binding protein DR 98.7 8.2E-08 1.8E-12 93.9 11.3 83 189-272 62-151 (364)
328 PRK10463 hydrogenase nickel in 98.7 2.5E-08 5.3E-13 101.9 7.3 58 289-350 230-287 (290)
329 KOG3886 GTP-binding protein [S 98.7 4.3E-08 9.3E-13 94.9 7.3 149 189-337 4-164 (295)
330 TIGR00993 3a0901s04IAP86 chlor 98.7 1.8E-07 3.9E-12 103.7 12.5 116 186-303 115-250 (763)
331 COG5192 BMS1 GTP-binding prote 98.6 2.6E-07 5.6E-12 98.9 12.1 143 184-337 64-211 (1077)
332 cd01859 MJ1464 MJ1464. This f 98.6 1.4E-07 3.1E-12 88.0 8.9 93 251-351 3-95 (156)
333 cd04178 Nucleostemin_like Nucl 98.6 5.5E-08 1.2E-12 92.7 5.9 57 187-247 115-172 (172)
334 KOG1954 Endocytosis/signaling 98.6 3.6E-07 7.8E-12 93.8 11.7 122 188-312 57-232 (532)
335 cd01858 NGP_1 NGP-1. Autoanti 98.6 6.1E-08 1.3E-12 90.8 5.8 56 188-247 101-157 (157)
336 KOG1487 GTP-binding protein DR 98.5 5.2E-07 1.1E-11 88.8 8.4 82 191-273 61-149 (358)
337 cd01855 YqeH YqeH. YqeH is an 98.4 1.8E-07 3.8E-12 90.4 4.9 56 188-247 126-190 (190)
338 PF00735 Septin: Septin; Inte 98.4 7.4E-07 1.6E-11 91.5 9.3 112 190-303 5-156 (281)
339 cd01855 YqeH YqeH. YqeH is an 98.4 1.1E-06 2.3E-11 85.0 9.8 103 246-351 20-124 (190)
340 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 3.9E-07 8.5E-12 83.8 5.5 53 191-247 85-138 (141)
341 cd01849 YlqF_related_GTPase Yl 98.4 4.3E-07 9.2E-12 84.9 5.6 57 187-247 98-155 (155)
342 PRK09563 rbgA GTPase YlqF; Rev 98.4 5.7E-07 1.2E-11 92.8 6.6 58 186-247 118-176 (287)
343 cd01856 YlqF YlqF. Proteins o 98.4 2.9E-06 6.4E-11 80.6 10.8 98 244-351 2-100 (171)
344 KOG0448 Mitofusin 1 GTPase, in 98.3 3.2E-06 7E-11 93.2 11.1 119 185-304 105-276 (749)
345 TIGR00157 ribosome small subun 98.3 1.6E-06 3.4E-11 87.5 8.2 94 248-348 24-119 (245)
346 cd01856 YlqF YlqF. Proteins o 98.3 1E-06 2.2E-11 83.7 6.4 58 186-247 112-170 (171)
347 TIGR03596 GTPase_YlqF ribosome 98.3 8.4E-07 1.8E-11 91.1 5.9 57 187-247 116-173 (276)
348 cd01858 NGP_1 NGP-1. Autoanti 98.3 3.1E-06 6.7E-11 79.2 9.3 90 256-352 4-95 (157)
349 TIGR00092 GTP-binding protein 98.3 1.3E-06 2.9E-11 92.1 7.1 83 190-272 3-109 (368)
350 COG1161 Predicted GTPases [Gen 98.3 8.3E-07 1.8E-11 93.0 5.5 60 184-247 127-187 (322)
351 TIGR03597 GTPase_YqeH ribosome 98.2 6.8E-07 1.5E-11 95.2 3.8 57 189-249 154-216 (360)
352 KOG1491 Predicted GTP-binding 98.2 2.1E-06 4.5E-11 87.8 7.0 85 188-272 19-126 (391)
353 smart00010 small_GTPase Small 98.2 9E-07 1.9E-11 78.3 3.6 113 190-341 1-115 (124)
354 TIGR03596 GTPase_YlqF ribosome 98.2 4.7E-06 1E-10 85.6 9.2 97 245-351 5-102 (276)
355 COG5019 CDC3 Septin family pro 98.2 1.4E-05 3E-10 83.0 12.0 114 189-304 23-177 (373)
356 cd01849 YlqF_related_GTPase Yl 98.2 7.3E-06 1.6E-10 76.5 8.9 82 262-350 1-83 (155)
357 cd01851 GBP Guanylate-binding 98.1 4E-06 8.7E-11 83.4 6.6 84 189-272 7-103 (224)
358 PRK13796 GTPase YqeH; Provisio 98.1 2.7E-06 5.8E-11 90.8 5.5 56 189-248 160-221 (365)
359 PF03193 DUF258: Protein of un 98.1 6.2E-06 1.3E-10 77.4 7.0 59 189-251 35-101 (161)
360 PRK12289 GTPase RsgA; Reviewed 98.1 2.6E-06 5.6E-11 90.1 4.9 58 190-251 173-238 (352)
361 PRK12288 GTPase RsgA; Reviewed 98.1 3.3E-06 7.1E-11 89.3 5.3 58 190-251 206-271 (347)
362 PRK10416 signal recognition pa 98.1 2.5E-05 5.5E-10 81.7 11.8 145 187-345 112-303 (318)
363 PRK12289 GTPase RsgA; Reviewed 98.1 8.5E-06 1.9E-10 86.2 8.1 86 256-349 85-172 (352)
364 PRK09563 rbgA GTPase YlqF; Rev 98.1 1.2E-05 2.6E-10 83.1 8.6 99 244-352 7-106 (287)
365 cd03693 EF1_alpha_II EF1_alpha 98.1 3.3E-05 7.1E-10 65.7 9.7 82 361-444 2-89 (91)
366 TIGR00064 ftsY signal recognit 98.0 2.8E-05 6.2E-10 79.6 10.7 97 235-345 153-261 (272)
367 KOG1547 Septin CDC10 and relat 98.0 7.8E-05 1.7E-09 73.0 12.0 112 190-303 47-198 (336)
368 TIGR00157 ribosome small subun 98.0 6.6E-06 1.4E-10 83.0 4.8 57 190-251 121-185 (245)
369 PRK14974 cell division protein 98.0 1.2E-05 2.5E-10 84.6 6.7 97 235-345 221-323 (336)
370 cd03694 GTPBP_II Domain II of 98.0 4.7E-05 1E-09 64.2 9.1 66 365-432 2-73 (87)
371 cd01859 MJ1464 MJ1464. This f 98.0 1.1E-05 2.4E-10 75.2 5.7 56 188-247 100-156 (156)
372 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 2.1E-05 4.6E-10 72.2 7.3 78 254-339 5-84 (141)
373 cd03690 Tet_II Tet_II: This su 97.9 4.7E-05 1E-09 63.8 8.7 78 362-440 2-83 (85)
374 KOG2655 Septin family protein 97.9 5.3E-05 1.2E-09 79.3 10.8 114 190-304 22-173 (366)
375 TIGR01425 SRP54_euk signal rec 97.9 7.2E-05 1.6E-09 80.8 11.7 113 188-302 99-252 (429)
376 cd04092 mtEFG2_II_like mtEFG2_ 97.9 6.7E-05 1.5E-09 62.5 9.1 76 365-441 2-82 (83)
377 cd01854 YjeQ_engC YjeQ/EngC. 97.9 3.2E-05 6.9E-10 79.9 8.3 84 257-348 75-160 (287)
378 PRK00098 GTPase RsgA; Reviewed 97.9 3.7E-05 8E-10 79.8 8.2 85 257-348 77-163 (298)
379 KOG3905 Dynein light intermedi 97.9 0.00018 4E-09 73.2 12.7 162 182-351 45-289 (473)
380 TIGR03597 GTPase_YqeH ribosome 97.9 5.8E-05 1.3E-09 80.5 9.7 99 247-350 50-151 (360)
381 cd03698 eRF3_II_like eRF3_II_l 97.9 0.00011 2.3E-09 61.4 9.2 76 363-441 1-82 (83)
382 KOG1424 Predicted GTP-binding 97.8 1.6E-05 3.4E-10 85.4 4.6 55 189-247 314-369 (562)
383 KOG2485 Conserved ATP/GTP bind 97.8 2.7E-05 5.8E-10 79.2 5.3 61 186-247 140-206 (335)
384 KOG0447 Dynamin-like GTP bindi 97.8 0.00024 5.1E-09 76.6 12.4 137 187-323 306-516 (980)
385 COG1162 Predicted GTPases [Gen 97.8 2.4E-05 5.1E-10 80.0 4.7 61 188-252 163-231 (301)
386 cd03689 RF3_II RF3_II: this su 97.8 0.00018 3.9E-09 60.4 9.0 74 367-441 2-83 (85)
387 cd04088 EFG_mtEFG_II EFG_mtEFG 97.7 0.00017 3.8E-09 59.9 8.8 76 365-441 2-82 (83)
388 PRK00098 GTPase RsgA; Reviewed 97.7 3.2E-05 7E-10 80.3 5.0 59 188-250 163-229 (298)
389 cd03691 BipA_TypA_II BipA_TypA 97.7 0.00019 4.1E-09 60.1 8.7 76 365-441 2-85 (86)
390 KOG1707 Predicted Ras related/ 97.7 0.00024 5.2E-09 77.6 11.5 162 186-355 422-586 (625)
391 PRK14722 flhF flagellar biosyn 97.7 0.00014 2.9E-09 77.5 9.5 119 184-303 132-295 (374)
392 cd00066 G-alpha G protein alph 97.7 0.00016 3.5E-09 75.8 9.7 79 223-302 148-241 (317)
393 PRK12288 GTPase RsgA; Reviewed 97.7 0.00016 3.4E-09 76.6 9.6 86 258-349 118-205 (347)
394 cd03112 CobW_like The function 97.7 0.00016 3.4E-09 68.0 8.6 63 236-301 86-158 (158)
395 KOG0052 Translation elongation 97.7 4.7E-05 1E-09 79.8 5.1 115 188-303 6-156 (391)
396 cd03697 EFTU_II EFTU_II: Elong 97.7 0.00019 4.1E-09 60.4 7.8 75 365-441 2-84 (87)
397 cd03696 selB_II selB_II: this 97.7 0.00029 6.3E-09 58.7 8.8 75 365-441 2-82 (83)
398 smart00275 G_alpha G protein a 97.6 0.00029 6.3E-09 74.6 10.8 79 223-302 171-264 (342)
399 cd01854 YjeQ_engC YjeQ/EngC. 97.6 5.9E-05 1.3E-09 77.9 5.2 59 189-251 161-227 (287)
400 PF05783 DLIC: Dynein light in 97.6 0.00065 1.4E-08 74.5 13.2 86 186-274 22-114 (472)
401 PRK01889 GTPase RsgA; Reviewed 97.6 0.00024 5.3E-09 75.6 9.7 83 258-348 110-193 (356)
402 cd04089 eRF3_II eRF3_II: domai 97.5 0.00052 1.1E-08 57.0 8.9 75 363-441 1-81 (82)
403 cd04091 mtEFG1_II_like mtEFG1_ 97.5 0.00056 1.2E-08 56.7 8.9 74 365-441 2-80 (81)
404 PRK00771 signal recognition pa 97.5 0.00017 3.8E-09 78.4 7.3 113 187-302 93-245 (437)
405 KOG2484 GTPase [General functi 97.5 6.5E-05 1.4E-09 78.6 3.1 63 181-247 244-307 (435)
406 cd03699 lepA_II lepA_II: This 97.4 0.00098 2.1E-08 55.9 9.2 76 365-441 2-85 (86)
407 cd03114 ArgK-like The function 97.4 0.00044 9.5E-09 64.3 7.0 58 236-300 91-148 (148)
408 PRK13796 GTPase YqeH; Provisio 97.4 0.00077 1.7E-08 72.0 9.7 96 249-350 58-157 (365)
409 cd03695 CysN_NodQ_II CysN_NodQ 97.3 0.0011 2.3E-08 55.1 8.1 75 365-441 2-80 (81)
410 PF00448 SRP54: SRP54-type pro 97.3 0.00032 7E-09 68.3 5.6 94 235-343 82-182 (196)
411 PRK12727 flagellar biosynthesi 97.3 0.00092 2E-08 73.7 9.3 116 184-302 345-497 (559)
412 TIGR03348 VI_IcmF type VI secr 97.2 0.00046 1E-08 84.2 6.9 112 185-302 107-256 (1169)
413 COG1419 FlhF Flagellar GTP-bin 97.2 0.0034 7.4E-08 66.8 12.0 142 187-342 201-379 (407)
414 PF03144 GTP_EFTU_D2: Elongati 97.2 0.00046 9.9E-09 55.9 3.9 64 378-441 1-74 (74)
415 cd03115 SRP The signal recogni 97.1 0.0014 2.9E-08 62.2 7.6 66 235-303 81-153 (173)
416 PRK11537 putative GTP-binding 97.1 0.0043 9.3E-08 65.0 11.8 135 188-333 3-186 (318)
417 COG3640 CooC CO dehydrogenase 97.1 0.0012 2.7E-08 64.9 7.2 62 238-302 135-198 (255)
418 PRK14721 flhF flagellar biosyn 97.1 0.0014 2.9E-08 71.0 8.0 115 184-302 186-339 (420)
419 PRK11889 flhF flagellar biosyn 97.0 0.00072 1.6E-08 72.0 4.9 115 187-303 239-391 (436)
420 COG0523 Putative GTPases (G3E 97.0 0.0057 1.2E-07 64.1 11.1 146 190-345 2-194 (323)
421 PRK10867 signal recognition pa 97.0 0.0035 7.7E-08 68.2 9.8 65 235-302 182-253 (433)
422 PF09547 Spore_IV_A: Stage IV 96.9 0.0076 1.6E-07 64.3 10.7 150 190-347 18-232 (492)
423 cd04090 eEF2_II_snRNP Loc2 eEF 96.8 0.0048 1E-07 52.7 7.7 69 365-433 2-85 (94)
424 COG1618 Predicted nucleotide k 96.8 0.041 8.8E-07 51.4 14.1 137 187-350 3-174 (179)
425 cd01342 Translation_Factor_II_ 96.8 0.0087 1.9E-07 48.0 9.0 75 365-440 2-81 (83)
426 COG3523 IcmF Type VI protein s 96.8 0.0023 5.1E-08 76.5 7.4 114 184-303 120-270 (1188)
427 cd03692 mtIF2_IVc mtIF2_IVc: t 96.8 0.012 2.6E-07 49.1 9.6 73 366-440 3-82 (84)
428 PRK05703 flhF flagellar biosyn 96.8 0.0073 1.6E-07 65.8 10.4 115 186-302 218-370 (424)
429 cd03700 eEF2_snRNP_like_II EF2 96.8 0.0058 1.3E-07 52.0 7.6 74 366-440 3-91 (93)
430 PRK12724 flagellar biosynthesi 96.7 0.012 2.6E-07 63.5 11.4 109 188-302 222-372 (432)
431 cd04178 Nucleostemin_like Nucl 96.7 0.0034 7.4E-08 59.8 6.6 42 262-303 1-44 (172)
432 PRK13695 putative NTPase; Prov 96.7 0.0069 1.5E-07 57.5 8.2 76 256-349 92-170 (174)
433 PRK12726 flagellar biosynthesi 96.7 0.0053 1.1E-07 65.3 8.0 26 186-211 203-228 (407)
434 PRK12723 flagellar biosynthesi 96.6 0.0077 1.7E-07 64.7 9.2 114 187-302 172-325 (388)
435 KOG2423 Nucleolar GTPase [Gene 96.6 0.00074 1.6E-08 70.5 1.1 58 186-247 304-362 (572)
436 COG0552 FtsY Signal recognitio 96.6 0.0059 1.3E-07 63.3 7.6 25 187-211 137-161 (340)
437 TIGR00959 ffh signal recogniti 96.5 0.0055 1.2E-07 66.6 7.2 65 235-302 181-252 (428)
438 PRK06995 flhF flagellar biosyn 96.5 0.0046 1E-07 68.0 6.4 26 186-211 253-278 (484)
439 cd03110 Fer4_NifH_child This p 96.4 0.011 2.4E-07 56.2 8.0 67 235-303 91-157 (179)
440 TIGR02475 CobW cobalamin biosy 96.4 0.019 4E-07 60.9 10.3 25 187-211 2-26 (341)
441 PF14578 GTP_EFTU_D4: Elongati 96.4 0.019 4.1E-07 47.4 7.9 77 362-442 3-81 (81)
442 KOG0082 G-protein alpha subuni 96.4 0.0066 1.4E-07 63.8 6.6 80 222-302 181-275 (354)
443 PF02492 cobW: CobW/HypB/UreG, 96.4 0.0044 9.6E-08 59.3 4.9 111 190-303 1-155 (178)
444 PRK01889 GTPase RsgA; Reviewed 96.3 0.0035 7.7E-08 66.7 4.2 27 186-212 192-218 (356)
445 COG1162 Predicted GTPases [Gen 96.3 0.024 5.1E-07 58.4 9.9 87 257-349 76-164 (301)
446 PRK06731 flhF flagellar biosyn 96.3 0.021 4.5E-07 58.4 9.5 115 187-303 73-225 (270)
447 KOG3859 Septins (P-loop GTPase 96.2 0.0048 1E-07 61.9 4.3 114 189-304 42-191 (406)
448 KOG0705 GTPase-activating prot 96.2 0.0079 1.7E-07 65.4 6.1 155 189-352 30-189 (749)
449 cd02036 MinD Bacterial cell di 96.1 0.026 5.7E-07 53.2 8.8 64 238-303 64-128 (179)
450 cd03688 eIF2_gamma_II eIF2_gam 96.1 0.029 6.2E-07 49.1 7.8 67 360-427 2-90 (113)
451 PRK14723 flhF flagellar biosyn 96.1 0.028 6.1E-07 64.9 10.0 25 187-211 183-207 (767)
452 cd02038 FleN-like FleN is a me 96.0 0.019 4E-07 52.6 6.7 103 193-301 4-109 (139)
453 cd02042 ParA ParA and ParB of 96.0 0.023 5E-07 48.8 6.9 71 192-272 2-73 (104)
454 KOG0780 Signal recognition par 96.0 0.017 3.6E-07 60.8 6.8 65 235-302 182-253 (483)
455 cd01983 Fer4_NifH The Fer4_Nif 95.9 0.024 5.3E-07 47.0 6.6 72 192-276 2-74 (99)
456 COG0194 Gmk Guanylate kinase [ 95.9 0.0046 1E-07 59.0 2.2 61 188-254 3-63 (191)
457 PRK14738 gmk guanylate kinase; 95.8 0.019 4.1E-07 56.3 6.6 27 186-212 10-36 (206)
458 PF00503 G-alpha: G-protein al 95.7 0.013 2.8E-07 63.3 5.3 80 223-302 222-316 (389)
459 PF13401 AAA_22: AAA domain; P 95.6 0.0065 1.4E-07 54.2 2.2 27 188-214 3-29 (131)
460 cd03111 CpaE_like This protein 95.6 0.036 7.8E-07 48.3 6.6 97 195-298 6-106 (106)
461 TIGR03499 FlhF flagellar biosy 95.6 0.023 4.9E-07 58.6 6.1 26 186-211 191-216 (282)
462 KOG0446 Vacuolar sorting prote 95.6 0.0056 1.2E-07 69.9 1.8 118 187-304 27-214 (657)
463 PF13555 AAA_29: P-loop contai 95.5 0.011 2.3E-07 46.4 2.7 23 188-210 22-44 (62)
464 TIGR03263 guanyl_kin guanylate 95.4 0.033 7.3E-07 52.8 6.2 54 190-246 2-56 (180)
465 KOG3887 Predicted small GTPase 95.4 0.058 1.3E-06 53.4 7.7 111 189-304 27-150 (347)
466 cd00071 GMPK Guanosine monopho 95.3 0.014 2.9E-07 53.5 3.1 51 192-245 2-54 (137)
467 KOG1533 Predicted GTPase [Gene 95.2 0.015 3.2E-07 57.4 3.0 66 237-302 97-176 (290)
468 PF06858 NOG1: Nucleolar GTP-b 95.2 0.035 7.6E-07 42.7 4.4 42 259-300 12-58 (58)
469 PRK14737 gmk guanylate kinase; 95.1 0.015 3.2E-07 56.2 2.8 53 188-243 3-56 (186)
470 cd02037 MRP-like MRP (Multiple 95.0 0.071 1.5E-06 50.3 7.2 67 235-301 66-133 (169)
471 PRK10751 molybdopterin-guanine 95.0 0.12 2.6E-06 49.3 8.5 26 187-212 4-29 (173)
472 PF03266 NTPase_1: NTPase; In 95.0 0.043 9.4E-07 52.1 5.5 22 191-212 1-22 (168)
473 PF13207 AAA_17: AAA domain; P 94.9 0.015 3.3E-07 51.3 2.2 22 191-212 1-22 (121)
474 COG0541 Ffh Signal recognition 94.9 0.057 1.2E-06 57.9 6.6 65 235-302 181-252 (451)
475 PF05621 TniB: Bacterial TniB 94.7 0.087 1.9E-06 54.4 7.4 100 186-298 58-189 (302)
476 COG3840 ThiQ ABC-type thiamine 94.7 0.021 4.7E-07 54.4 2.6 28 186-213 22-49 (231)
477 COG1116 TauB ABC-type nitrate/ 94.7 0.021 4.6E-07 57.0 2.7 27 186-212 26-52 (248)
478 COG1136 SalX ABC-type antimicr 94.7 0.021 4.5E-07 56.6 2.6 28 186-213 28-55 (226)
479 smart00072 GuKc Guanylate kina 94.6 0.11 2.3E-06 49.9 7.4 25 189-213 2-26 (184)
480 PF00005 ABC_tran: ABC transpo 94.6 0.026 5.5E-07 51.0 2.8 28 187-214 9-36 (137)
481 cd00009 AAA The AAA+ (ATPases 94.5 0.074 1.6E-06 47.2 5.7 27 188-214 18-44 (151)
482 TIGR00235 udk uridine kinase. 94.1 0.029 6.2E-07 54.9 2.3 27 186-212 3-29 (207)
483 PLN03046 D-glycerate 3-kinase; 94.0 0.066 1.4E-06 57.7 4.8 25 187-211 210-234 (460)
484 cd02019 NK Nucleoside/nucleoti 94.0 0.033 7.1E-07 44.5 2.0 21 192-212 2-22 (69)
485 PRK08233 hypothetical protein; 94.0 0.036 7.8E-07 52.5 2.6 25 188-212 2-26 (182)
486 PRK05480 uridine/cytidine kina 93.9 0.037 8E-07 54.1 2.6 27 186-212 3-29 (209)
487 COG1161 Predicted GTPases [Gen 93.9 0.14 3.1E-06 53.7 7.1 99 241-349 14-114 (322)
488 KOG0781 Signal recognition par 93.9 0.065 1.4E-06 57.8 4.3 118 186-303 375-544 (587)
489 COG1126 GlnQ ABC-type polar am 93.8 0.043 9.2E-07 53.8 2.7 27 186-212 25-51 (240)
490 smart00382 AAA ATPases associa 93.8 0.045 9.7E-07 48.1 2.7 26 189-214 2-27 (148)
491 PRK14530 adenylate kinase; Pro 93.8 0.04 8.7E-07 54.2 2.6 25 188-212 2-26 (215)
492 cd03238 ABC_UvrA The excision 93.7 0.044 9.6E-07 52.4 2.7 26 185-210 17-42 (176)
493 cd03264 ABC_drug_resistance_li 93.7 0.04 8.6E-07 53.9 2.3 25 187-212 24-48 (211)
494 PF03205 MobB: Molybdopterin g 93.7 0.04 8.7E-07 50.7 2.2 24 190-213 1-24 (140)
495 PF13521 AAA_28: AAA domain; P 93.6 0.031 6.6E-07 52.4 1.4 22 191-212 1-22 (163)
496 PRK07261 topology modulation p 93.6 0.041 8.9E-07 52.3 2.2 22 191-212 2-23 (171)
497 cd03222 ABC_RNaseL_inhibitor T 93.6 0.045 9.7E-07 52.5 2.4 29 185-213 21-49 (177)
498 TIGR02322 phosphon_PhnN phosph 93.6 0.045 9.7E-07 52.0 2.4 23 190-212 2-24 (179)
499 PF08433 KTI12: Chromatin asso 93.6 0.2 4.4E-06 51.3 7.3 103 190-301 2-109 (270)
500 TIGR00960 3a0501s02 Type II (G 93.6 0.048 1E-06 53.5 2.7 28 186-213 26-53 (216)
No 1
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-80 Score=642.40 Aligned_cols=459 Identities=52% Similarity=0.786 Sum_probs=403.5
Q ss_pred CCcccccchhhHHHHHHHHhcCCHHHHHHHHHHcccccccC--CCCCCh----hHHHHHHHHhCCcee------------
Q 008003 114 QDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSE--FEPLSI----DVAELVVMELGFNVR------------ 175 (581)
Q Consensus 114 ~~~~i~~~~~~a~~~l~g~l~~~~~~l~~~L~~~~~~ie~~--~~~~~~----d~~~~i~~~~~~~~~------------ 175 (581)
.++.+.++.++++.+|+..++..+..+.+.|+.++...... +..++. |..+.+..+++...-
T Consensus 58 ~~~~~~v~~~m~~~kla~~~~~~~~~v~e~l~sv~~a~~~~~~~~~ld~~~I~ev~~~~~~~~~~~~~~~~~~~e~~~~~ 137 (683)
T KOG1145|consen 58 KKKNFSVWNYMTAAKLAAALKCSVDEVQEALLSVGFAYNLAIADSNLDTKGILEVVELILMKYRFVLLPAETSVEEKAAD 137 (683)
T ss_pred cCccccccccccHHHHhhhhcCCHHHHHHHHHhccccccccccccccchHHHHHHHHHHhhccccccCChhhhhhhhhhh
Confidence 44677889999999999999999999999999987733211 122222 222233333321100
Q ss_pred --eecCCcCCCCCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHH
Q 008003 176 --RIHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM 253 (581)
Q Consensus 176 --~l~~~~~~~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~ 253 (581)
...+.....+.+|+|.|.||||++|||||||++|++..+...+.+|+|++++.+.+.+++|..++|+|||||..|..|
T Consensus 138 ~~~~~~a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aM 217 (683)
T KOG1145|consen 138 VAPQPEADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAM 217 (683)
T ss_pred cccCCccCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHH
Confidence 011244556778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEe
Q 008003 254 RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 254 ~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iS 333 (581)
+.+++..+|+++||+.+++|+++||.+.+.+++..++|+|+++||||.++++++++++++...++..+.+|++++++|+|
T Consensus 218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiS 297 (683)
T KOG1145|consen 218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPIS 297 (683)
T ss_pred HhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccceEEEEEcccC
Q 008003 334 AVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVG 413 (581)
Q Consensus 334 Aktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~kVk~i~~~~g 413 (581)
|++|+|++.|.+++..+++.++.+++|..|+.++|+|+..++++|.++|.+|.+|||++|+.+++|..|+|||.|.+.+|
T Consensus 298 Al~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~~w~KVr~l~D~nG 377 (683)
T KOG1145|consen 298 ALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGKSWCKVRALFDHNG 377 (683)
T ss_pred cccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEechhhhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHh----hhh-------hh---hccCCC--
Q 008003 414 KSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVR----KIN-------EE---RTENLE-- 477 (581)
Q Consensus 414 ~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~----~~~-------~~---~~~~~~-- 477 (581)
+++.+|+||++++|.||+++|.+||.+..|+++.+|+++.+.|....+.++.. .+. +. ++....
T Consensus 378 k~i~~A~Ps~pv~V~GwkdlP~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~ 457 (683)
T KOG1145|consen 378 KPIDEATPSQPVEVLGWKDLPIAGDEVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENI 457 (683)
T ss_pred CCccccCCCCceEeecccCCCCCCceEEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 99999999999999999999999999999999999999999998775443310 000 00 000000
Q ss_pred ----CCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeEEEeccCccchhhhhhhhccCCEEEEecCCCChhH
Q 008003 478 ----PSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTS 553 (581)
Q Consensus 478 ----~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i~~~~vG~it~~Dv~~A~~~~~~I~~Fnv~~~~~~ 553 (581)
+-......+.+|+|||+|++||+|||.++|+.|++++|+++++++|||++|++|+++|+++.|+|++|||+.++..
T Consensus 458 ~~~~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~~daiI~~FnV~~~~~~ 537 (683)
T KOG1145|consen 458 GRKTRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQASDAIIYGFNVKASPSV 537 (683)
T ss_pred ccceecccccCCcceEEEEEecccchHHHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHhcCcEEEEEecCCChHH
Confidence 0011123467999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHcCceEEEeeeecc
Q 008003 554 VSQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 554 ~~~~a~~~~v~i~~~~ii~~ 573 (581)
++.|.+.||+|++|||||-
T Consensus 538 -~~~a~~~gVkI~~~nVIY~ 556 (683)
T KOG1145|consen 538 -KQLAAAKGVKIRLYNVIYR 556 (683)
T ss_pred -HHHHhccCceEeehhHHHH
Confidence 9999999999999999994
No 2
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=3.8e-72 Score=634.16 Aligned_cols=456 Identities=48% Similarity=0.765 Sum_probs=411.3
Q ss_pred cCCCcccccchhhHHHHHHHHhcCCHHHHHHHHHHcccccccCCCCCChhHHHHHHHHhCCceeeecC---CcCCCCCCC
Q 008003 112 SSQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVAELVVMELGFNVRRIHS---SEGTEILPR 188 (581)
Q Consensus 112 ~~~~~~i~~~~~~a~~~l~g~l~~~~~~l~~~L~~~~~~ie~~~~~~~~d~~~~i~~~~~~~~~~l~~---~~~~~~~~~ 188 (581)
....++|.|++.+++.+|+..++....++++.|+.++.++ +.++.++.|..+.++++++..+..... .....+..|
T Consensus 211 ~~~~~~i~i~~~itv~ela~~~~~~~~~ii~~l~~~g~~~-~~n~~l~~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~R 289 (787)
T PRK05306 211 EKIPREVVIPETITVAELAEKMAVKAAEVIKKLFKLGVMA-TINQSLDQETAELLAEEFGHEVKLVSLLEDDDEEDLVPR 289 (787)
T ss_pred cccceeEEcCCCcCHHHHHHHHCCCHHHHHHHHHHcCCee-cCCCccCHHHHHHHHHHcCCEEEEccccccccccccccC
Confidence 5567889999999999999999999999999999999988 899999999999999999987766443 234567889
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
+++|+|+||+|||||||+++|++..+..++.+|+|+++..+.+.+ ++..++|||||||++|..++.+++..+|++||||
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVV 368 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET-NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVV 368 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE-CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEE
Confidence 999999999999999999999998888888899999999999988 6899999999999999999999999999999999
Q ss_pred eccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHH
Q 008003 269 AADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALL 348 (581)
Q Consensus 269 Da~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~ 348 (581)
|+++|..+++.+++.++...++|+||++||+|+.+.+.+++...+...+...+.+++.++++++||++|.|+++|+++|.
T Consensus 369 dAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 369 AADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred ECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhh
Confidence 99999999999999999889999999999999987666667666666665566677778999999999999999999998
Q ss_pred HHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccceEEEEEcccCCcccccCCCCcEEEe
Q 008003 349 LQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIE 428 (581)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~i~ 428 (581)
...+..+...+++.++.++|++++.+++.|.+++++|.+|+|+.||.|++|+.+++|+.|.+.+++.+++|+||+++.|.
T Consensus 449 ~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~~~gkVr~m~~~~~~~v~~A~pGd~V~I~ 528 (787)
T PRK05306 449 LQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYGRVRAMVDDNGKRVKEAGPSTPVEIL 528 (787)
T ss_pred hhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECCcEEEEEEEECCCCCCCCEEcCCCeEEEe
Confidence 87777777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC--CCC-CCCCcccCEEEEecCcccHHHHHH
Q 008003 429 GLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEP--SED-VPKRAEMPVIVKADVQGTVQAVTD 505 (581)
Q Consensus 429 gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~iiikad~~Gs~eAi~~ 505 (581)
||.++|.+||+|+++.++.+|++++++|++..++.+.. .....++++ ..+ .++.+.+|+|||||++||+|||.+
T Consensus 529 gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~ 605 (787)
T PRK05306 529 GLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLA---RQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKD 605 (787)
T ss_pred CCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhh---hccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHH
Confidence 99999999999999999999999999999877765432 111222322 111 123457999999999999999999
Q ss_pred HHHhcCCCceEeeEEEeccCccchhhhhhhhccCCEEEEecCCCChhHHHHHHHHcCceEEEeeeecc
Q 008003 506 ALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 506 ~l~~~~~~~~~~~i~~~~vG~it~~Dv~~A~~~~~~I~~Fnv~~~~~~~~~~a~~~~v~i~~~~ii~~ 573 (581)
+|.++.+++++++|++++||+||++||.+|++++|+||||||++++++ +++|++.||+|++|+|||-
T Consensus 606 ~l~~l~~~~v~~~i~~~~vG~it~~Dv~la~~~~a~ii~Fnv~~~~~~-~~~a~~~~v~i~~~~iIY~ 672 (787)
T PRK05306 606 SLEKLSTDEVKVNIIHSGVGAITESDVTLAAASNAIIIGFNVRPDAKA-RKLAEQEGVDIRYYSIIYD 672 (787)
T ss_pred HHHhhcccCCceEEEeeccCCCCHHHHHHHHhcCCEEEEEcCCCCHHH-HHHHHHcCCEEEEeChHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999994
No 3
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=2.7e-71 Score=614.79 Aligned_cols=454 Identities=47% Similarity=0.729 Sum_probs=403.1
Q ss_pred CcccccchhhHHHHHHHHhcCCHHHHHHHHHHcccccccCCCCCChhHHHHHHHHhCCceeeecC-----------CcCC
Q 008003 115 DKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVAELVVMELGFNVRRIHS-----------SEGT 183 (581)
Q Consensus 115 ~~~i~~~~~~a~~~l~g~l~~~~~~l~~~L~~~~~~ie~~~~~~~~d~~~~i~~~~~~~~~~l~~-----------~~~~ 183 (581)
++.|.+++.+++.+|+..++....++++.|+.++.++ +.++.++.|..+.++++++..+..... ....
T Consensus 3 ~~~~~~~~~~~v~~la~~~~~~~~~~~~~l~~~g~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (587)
T TIGR00487 3 PSVIVIGGTLTVSELANKMNIKVSDIIKKLMLLGVMV-TINQVLDKETAELVAEEFGVKVEVRVTLEETEAEEQDEDSGD 81 (587)
T ss_pred ceEEEeCCCeEHHHHHHHHCcCHHHHHHHHHHCCCEe-cCCcCcCHHHHHHHHHHhCCceEEeccchhhhhhcccccccc
Confidence 4678899999999999999999999999999999988 899999999999999999977643211 1133
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccE
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDI 263 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDi 263 (581)
.+..++++|+++||+|||||||+++|++..+...+.+|+|+++..+.+.++++..++|||||||++|..++.+++..+|+
T Consensus 82 ~~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 82 LLVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCE
Confidence 46678999999999999999999999999888888899999999988887444599999999999999999999999999
Q ss_pred EEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 264 VVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 264 vllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
+++|+|++++..+++.+++.++...++|+|+++||+|+.+.+.++....+...+.....|++..+++++||++|+|+++|
T Consensus 162 aILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eL 241 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDEL 241 (587)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHH
Confidence 99999999999999999999988889999999999999876777777777666665566777789999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccceEEEEEcccCCcccccCCCC
Q 008003 344 EVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAM 423 (581)
Q Consensus 344 l~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~ 423 (581)
+++|..+.+...+..+++.|+.++|++++.+++.|.+++++|.+|+|++||.|++|+.+++||+|.+.+|+.+++|.||+
T Consensus 242 l~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~~~kVr~l~~~~g~~v~~a~~g~ 321 (587)
T TIGR00487 242 LDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAAYGRVRAMIDENGKSVKEAGPSK 321 (587)
T ss_pred HHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCCccEEEEEECCCCCCCCEECCCC
Confidence 99998877777777778899999999999999999999999999999999999999999999999998999999999999
Q ss_pred cEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC--CCC-CCCCcccCEEEEecCcccH
Q 008003 424 PVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEP--SED-VPKRAEMPVIVKADVQGTV 500 (581)
Q Consensus 424 ~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~iiikad~~Gs~ 500 (581)
++.|.||.++|.+||.|++++++++|++++++|++..++...+ .....++++ ... ..+.+.+|+|||||++||+
T Consensus 322 ~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~ 398 (587)
T TIGR00487 322 PVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALS---RSVKVTLDNLFEQIKEGELKELNIILKADVQGSL 398 (587)
T ss_pred EEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhh---hccccchhHhhhhhhccCCceEEEEEEeCCcchH
Confidence 9999999999999999999999999999999998766554321 111112221 111 1245789999999999999
Q ss_pred HHHHHHHHhcCCCceEeeEEEeccCccchhhhhhhhccCCEEEEecCCCChhHHHHHHHHcCceEEEeeeecc
Q 008003 501 QAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 501 eAi~~~l~~~~~~~~~~~i~~~~vG~it~~Dv~~A~~~~~~I~~Fnv~~~~~~~~~~a~~~~v~i~~~~ii~~ 573 (581)
|||.++|+++++++++++|++++||+||++||.+|++++|+|+||||++++++ +++|++.||+|++|+|||-
T Consensus 399 eal~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~Fnv~~~~~~-~~~a~~~~v~i~~~~iIY~ 470 (587)
T TIGR00487 399 EAIKNSLEKLNNEEVKVKVIHSGVGGITETDISLASASNAIIIGFNVRPDATA-KNVAEAENVDIRYYSVIYK 470 (587)
T ss_pred HHHHHHHHhhcccCCeEEEEEeecCCCchhhHHHHHhcCCEEEEEecCCCHHH-HHHHHHcCCeEEEeChHHH
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999994
No 4
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-71 Score=589.70 Aligned_cols=384 Identities=51% Similarity=0.788 Sum_probs=357.1
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec--CCeEEEEEeCCCcchhhHHHhhccccccE
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDI 263 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~--~g~~i~liDTpG~~~~~~~~~~~~~~aDi 263 (581)
..|+|.|++|||++|||||||+.+++.++...+.+|+|++++.+.+.++ +...++|+|||||+.|..|+.+++.-+|+
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 3588999999999999999999999999999999999999999999986 34799999999999999999999999999
Q ss_pred EEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 264 VVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 264 vllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
++||+|+++|+++||.+.+++++..++|++|++||+|+++.+++....++.++++..+.|++++.++|+||++|+|+++|
T Consensus 82 aILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eL 161 (509)
T COG0532 82 AILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDEL 161 (509)
T ss_pred EEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccceEEEEEcccCCcccccCCCC
Q 008003 344 EVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAM 423 (581)
Q Consensus 344 l~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~ 423 (581)
++.|..+++..+.+.+++.++.++|+|+..++|+|.++++++++|+|+.||.|++|+.+|+|+.|.+..+.+++.++|+.
T Consensus 162 L~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps~ 241 (509)
T COG0532 162 LELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSK 241 (509)
T ss_pred HHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC--CCC--CCCCcccCEEEEecCccc
Q 008003 424 PVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEP--SED--VPKRAEMPVIVKADVQGT 499 (581)
Q Consensus 424 ~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~iiikad~~Gs 499 (581)
++.+.|++++|.+|+.+.+++++..|++++++|...++.... ......++++ +.+ ..+.+.+|+|||||++||
T Consensus 242 ~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GS 318 (509)
T COG0532 242 PVEILGLSEVPAAGDVFIVVKDEKKARAIAELRVVLLREAEL---ASKKKGELEELIAEIKIRGELKELNVILKADTQGS 318 (509)
T ss_pred CeEEeccccccccCceEEecCChHHHhhhhhHhhhhhhhhhh---hhHHHHHHHHHHHhhhccCCcceecEEEEEcccch
Confidence 999999999999999999999999999999999865211110 0001111111 111 235678999999999999
Q ss_pred HHHHHHHHHhcCCCceEeeEEEeccCccchhhhhhhhccCCEEEEecCCCChhHHHHHHHHcCceEEEeeeecc
Q 008003 500 VQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 500 ~eAi~~~l~~~~~~~~~~~i~~~~vG~it~~Dv~~A~~~~~~I~~Fnv~~~~~~~~~~a~~~~v~i~~~~ii~~ 573 (581)
+|||..+|+++..++++++|++++||+||++||.+|++++++|+||||++.+.+ +++|++.||+|++|+|||-
T Consensus 319 lEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~as~avIigFnV~~~~~a-~~~ae~~~V~I~~~~iIY~ 391 (509)
T COG0532 319 LEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASDAVIIGFNVRVDPEA-RRLAESEGVKIRYYDVIYK 391 (509)
T ss_pred HHHHHHHHHhcCCCceEEEEEEeecCCCChhhHHHHHhcCCEEEEEecCCCHHH-HHHHHhcCCcEEEcchHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999994
No 5
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=1.5e-69 Score=607.95 Aligned_cols=454 Identities=37% Similarity=0.595 Sum_probs=399.3
Q ss_pred cCCCcccccchhhHHHHHHHHhcCCHHHHHHHHHHcccccccCCCCCChhHHHHHHHHhCCceeeecC------------
Q 008003 112 SSQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVAELVVMELGFNVRRIHS------------ 179 (581)
Q Consensus 112 ~~~~~~i~~~~~~a~~~l~g~l~~~~~~l~~~L~~~~~~ie~~~~~~~~d~~~~i~~~~~~~~~~l~~------------ 179 (581)
....++|.+++.+++.+|+..++....++++.|+.+|.++ +.++.++.|.++.++.+++..+.....
T Consensus 154 ~~~~~~i~~~~~~tv~~la~~~~~~~~~ii~~l~~~g~~~-~~n~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (742)
T CHL00189 154 NNKPKSISIHSPLTIQELSTLLCIPETEIIKSLFLKGISV-TVNQIIDISIISQVADDFGINIISEEKNNINEKTSNLDN 232 (742)
T ss_pred cCCCeeEEeCCCcCHHHHHHHHCcCHHHHHHHHHHcCcCc-cCCCccCHHHHHHHHHHcCCeEEEeccchhhhhhhcccc
Confidence 3456789999999999999999999999999999999988 899999999999999999976643211
Q ss_pred C--cCCCCCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec---CCeEEEEEeCCCcchhhHHH
Q 008003 180 S--EGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS---TGASITFLDTPGHAAFSAMR 254 (581)
Q Consensus 180 ~--~~~~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~---~g~~i~liDTpG~~~~~~~~ 254 (581)
. ....+..++++|+|+||+|||||||+++|++..+...+.+|+|+++..+.+.+. .+..++|||||||+.|..++
T Consensus 233 ~~~~~~~l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr 312 (742)
T CHL00189 233 TSAFTENSINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMR 312 (742)
T ss_pred cccchhhhcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHH
Confidence 0 023356789999999999999999999999988888888999999887776653 35899999999999999999
Q ss_pred hhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEec
Q 008003 255 KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 255 ~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSA 334 (581)
.+++..+|++|+|||++++..+++.+++..+...++|+|+|+||+|+...+.+.+...+...+.....+++.++++++||
T Consensus 313 ~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 313 SRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred HHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 99999999999999999999999999999998889999999999999876656666666555444455666789999999
Q ss_pred cCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccceEEEEEcccCC
Q 008003 335 VKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGK 414 (581)
Q Consensus 335 ktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~kVk~i~~~~g~ 414 (581)
++|.|+++|+++|....+......++..++.++|+++..+++.|.+++++|.+|+|+.||.|++|+.+|+|+.|.+.++.
T Consensus 393 ktG~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~~~gkVr~m~~~~~~ 472 (742)
T CHL00189 393 SQGTNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGTSYAKIRGMINSLGN 472 (742)
T ss_pred CCCCCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECCcceEEEEEEcCCCc
Confidence 99999999999999887777777778889999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC---CCCCCCCcccCEE
Q 008003 415 STDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEP---SEDVPKRAEMPVI 491 (581)
Q Consensus 415 ~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ii 491 (581)
.+++|.||+++.|.||.+.|.+||.|.+++++.+|+++++.|.+..+..... ..++++ .....+.+.+|+|
T Consensus 473 ~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i 546 (742)
T CHL00189 473 KINLATPSSVVEIWGLSSVPATGEHFQVFNSEKEAKLKIIKNKENNKKDTTK------RITLSTTKTINKKDNKKQINLI 546 (742)
T ss_pred CccEEcCCCceEecCcccCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhhc------ccchHHHHHHhhhcCCceeeEE
Confidence 9999999999999999999999999999999999999999887665432211 111111 0111356789999
Q ss_pred EEecCcccHHHHHHHHHhcCCCceEeeEEEeccCccchhhhhhhhccCCEEEEecCCCChhHHHHHHHHcCceEEEeeee
Q 008003 492 VKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGIKTRLLGLL 571 (581)
Q Consensus 492 ikad~~Gs~eAi~~~l~~~~~~~~~~~i~~~~vG~it~~Dv~~A~~~~~~I~~Fnv~~~~~~~~~~a~~~~v~i~~~~ii 571 (581)
||||++||+|||.++|.++++++|+++|++++||+||++||.+|++++|+|+||||++++++ +++|++.||+|++|+||
T Consensus 547 iKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~it~~Dv~lA~~~~a~ii~Fnv~~~~~~-~~~a~~~~v~i~~~~iI 625 (742)
T CHL00189 547 IKTDTQGSIEAIINSISQIPQKKVQLNILYASLGEVTETDVEFASTTNAEILAFNTNLAPGA-KKAARKLNIIIKEYQVI 625 (742)
T ss_pred EEeCCcchHHHHHHHHHhcCCCcEEEEEEEeecCCCCHHHHHHHHhcCCEEEEeeCCCCHHH-HHHHHHcCCEEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cc
Q 008003 572 RP 573 (581)
Q Consensus 572 ~~ 573 (581)
|-
T Consensus 626 Y~ 627 (742)
T CHL00189 626 YD 627 (742)
T ss_pred HH
Confidence 94
No 6
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=3.2e-56 Score=493.51 Aligned_cols=361 Identities=34% Similarity=0.510 Sum_probs=296.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC-----------------eEEEEEeCCCcch
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG-----------------ASITFLDTPGHAA 249 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g-----------------~~i~liDTpG~~~ 249 (581)
.|+|.|+++||+|||||||+|+|++..+...+.+|+|++++...+..+.. ..++|||||||+.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 46889999999999999999999999888777888999888777654211 1389999999999
Q ss_pred hhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCC-C--------------hhhHH----
Q 008003 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAA-D--------------PERVK---- 310 (581)
Q Consensus 250 ~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~-~--------------~~~~~---- 310 (581)
|..++.++++.+|++++|+|++++..+++.+.+..+...++|+++++||+|+... . ...+.
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~ 161 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLD 161 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999998888889999999999999631 1 01111
Q ss_pred -------hhhhhccchhh------hcCCcceEEEEeccCCCChhhHHHHHHHHHHH---hhcccccCCCcceEEEEEEee
Q 008003 311 -------NQLGAEGLELE------DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM---MNLKARVDGPAQAYVVEARLD 374 (581)
Q Consensus 311 -------~~l~~~~~~~~------~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~---~~~~~~~~~~~~~~V~e~~~~ 374 (581)
..+.+.++..+ .+++.++++++||++|+|+++|+++|..+.+. ...+.+++.|+.++|++++.+
T Consensus 162 ~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~ 241 (590)
T TIGR00491 162 TKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEE 241 (590)
T ss_pred HHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEc
Confidence 12333344332 46778999999999999999999999765542 245667788999999999999
Q ss_pred cCCCcEEEEEEeccEEeeCcEEEEccccc----eEEEEEccc-----------CCcccccCCCCcEE--EeccCCCCCCC
Q 008003 375 KGRGPLTTAIVKAGTLVCGQHVVVGHEWG----RIRAIRDMV-----------GKSTDKARPAMPVE--IEGLKGLPMAG 437 (581)
Q Consensus 375 ~~~G~v~~~~V~~GtLk~gd~i~~g~~~~----kVk~i~~~~-----------g~~v~~a~~~~~v~--i~gl~~~~~~G 437 (581)
+|.|++++++|++|+|++||.|++|+.+| +||+|++.+ +..++++.|+..+. +.||.+ +.+|
T Consensus 242 ~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~-~~aG 320 (590)
T TIGR00491 242 TGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD-VMAG 320 (590)
T ss_pred CCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC-CCCC
Confidence 99999999999999999999999998764 999999775 35778877766554 468887 5899
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEe
Q 008003 438 DDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFV 517 (581)
Q Consensus 438 d~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~ 517 (581)
+.|.++.++.. .+.|++..++.+. .. .+.+.+++|||||++||+|||.++|.+++ +
T Consensus 321 ~~~~~~~~e~~----~~~~~~~~~~~~~--------~~-------~~~~~~~vivkad~~Gs~EAl~~~l~~~~-----i 376 (590)
T TIGR00491 321 SPIRVVTDEEI----EKVKEEILKEVEE--------IK-------IDTDEEGVVVKADTLGSLEALVNELRDMG-----V 376 (590)
T ss_pred CEEEEcCcHHH----HHHHHHHHHHhhh--------cc-------cccccccEEEEecCcchHHHHHHHHHhCC-----C
Confidence 99988876642 1222222222111 01 13467999999999999999999999886 7
Q ss_pred eEEEeccCccchhhhhhhhccC------CEEEEecCCCChhHHHHHHHHcCceEEEeeeecc
Q 008003 518 NVVHVGVGSVTQSDVDLAQACG------ACIVGFNVKSPPTSVSQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 518 ~i~~~~vG~it~~Dv~~A~~~~------~~I~~Fnv~~~~~~~~~~a~~~~v~i~~~~ii~~ 573 (581)
+|++++||+||++||.+|++++ |+|+||||++++++ +++|+++||+|++|+|||-
T Consensus 377 ~i~~~~vG~it~~Dv~~A~~~~~~~~~~a~Il~Fnv~~~~~a-~~~A~~~~v~i~~~~iIY~ 437 (590)
T TIGR00491 377 PIKKADIGDVSKRDVVEAGIAKQEDRVYGAIIAFNVKVLPGA-EQELKKYDIKLFSDNIIYR 437 (590)
T ss_pred cEEEecCCCCcHhHHHHHhhcccCCCCceEEEEecCCCCHHH-HHHHHHcCCEEEEeCcHHH
Confidence 8999999999999999999985 99999999999999 9999999999999999994
No 7
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=7.7e-56 Score=492.41 Aligned_cols=362 Identities=36% Similarity=0.537 Sum_probs=299.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-----Ce------------EEEEEeCCCcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-----GA------------SITFLDTPGHA 248 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-----g~------------~i~liDTpG~~ 248 (581)
..|+|.|+++||+|||||||+|+|.+..+...+.+++|++++...+..+. +. .++|||||||+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 46889999999999999999999998887777888899988776554320 10 27899999999
Q ss_pred hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCC-CCh--------------hh-----
Q 008003 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA-ADP--------------ER----- 308 (581)
Q Consensus 249 ~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~-~~~--------------~~----- 308 (581)
+|..++.+++..+|++++|+|++++..+++.+.+..+...++|+++++||+|+.. +.. ..
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f 162 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQEL 162 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999999999988888999999999999852 210 00
Q ss_pred ------HHhhhhhccchh------hhcCCcceEEEEeccCCCChhhHHHHHHHHHH--H-hhcccccCCCcceEEEEEEe
Q 008003 309 ------VKNQLGAEGLEL------EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE--M-MNLKARVDGPAQAYVVEARL 373 (581)
Q Consensus 309 ------~~~~l~~~~~~~------~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~--~-~~~~~~~~~~~~~~V~e~~~ 373 (581)
+...+...++.. .+++++++++++||++|+|+++|++.+....+ + .....+++.|+.++|++++.
T Consensus 163 ~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~ 242 (586)
T PRK04004 163 EEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKE 242 (586)
T ss_pred HHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEE
Confidence 112233333332 24567889999999999999999999875443 2 23456678899999999999
Q ss_pred ecCCCcEEEEEEeccEEeeCcEEEEccccc----eEEEEEcc-----------cCCcccccCCCCcEEEe--ccCCCCCC
Q 008003 374 DKGRGPLTTAIVKAGTLVCGQHVVVGHEWG----RIRAIRDM-----------VGKSTDKARPAMPVEIE--GLKGLPMA 436 (581)
Q Consensus 374 ~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~----kVk~i~~~-----------~g~~v~~a~~~~~v~i~--gl~~~~~~ 436 (581)
+++.|++++++|.+|+|++||.|++++.++ +||+|.+. .++.++++.|+.++.|. ||.++ .+
T Consensus 243 ~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~-~~ 321 (586)
T PRK04004 243 ERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDA-LA 321 (586)
T ss_pred eCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCcccc-CC
Confidence 999999999999999999999999988775 99999875 56889999999999986 99998 89
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceE
Q 008003 437 GDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLF 516 (581)
Q Consensus 437 Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~ 516 (581)
|+.|.++.++. +.+ .+.+..++... .....+.+|+|||||++||+|||.++|+++.
T Consensus 322 g~~~~v~~~~~-~~~---~~~~~~~~~~~---------------~~~~~~~~~vivkad~~Gs~EAi~~~l~~~~----- 377 (586)
T PRK04004 322 GSPLRVVRDED-VEE---VKEEVEEEIEE---------------IRIETDEEGVVVKADTLGSLEALVNELREEG----- 377 (586)
T ss_pred CCeEEEeCcHH-HHH---HHHHHHHHHHh---------------ccccccccCEEEEeCCccHHHHHHHHHHhCC-----
Confidence 99999998843 333 23222222110 0013467999999999999999999999874
Q ss_pred eeEEEeccCccchhhhhhhhcc------CCEEEEecCCCChhHHHHHHHHcCceEEEeeeecc
Q 008003 517 VNVVHVGVGSVTQSDVDLAQAC------GACIVGFNVKSPPTSVSQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 517 ~~i~~~~vG~it~~Dv~~A~~~------~~~I~~Fnv~~~~~~~~~~a~~~~v~i~~~~ii~~ 573 (581)
++|++++||+||++||.+|+++ +|+|+||||++++++ +++|++.||+|++|+|||-
T Consensus 378 i~i~~~~vG~it~~Dv~lA~~~~~~~~~~a~Il~FnV~~~~~a-~~~A~~~~V~I~~~~iIY~ 439 (586)
T PRK04004 378 IPIRKADVGDISKRDVIEASTVAEKDPLYGVILAFNVKVLPDA-EEEAEKSDVKIFTGDVIYQ 439 (586)
T ss_pred CCEEEeccCCCCHHHHHHHHhhhccCCCceEEEEecCCCCHHH-HHHHHHcCCeEEEeChHHH
Confidence 8999999999999999999999 999999999999999 9999999999999999993
No 8
>PRK14845 translation initiation factor IF-2; Provisional
Probab=100.00 E-value=1.4e-51 Score=474.98 Aligned_cols=347 Identities=32% Similarity=0.489 Sum_probs=294.2
Q ss_pred cchHhhhhhcccccccccCceeEeeeeEEEeecCCe-----------------EEEEEeCCCcchhhHHHhhccccccEE
Q 008003 202 KTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGA-----------------SITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 202 KSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~-----------------~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
|||||++|++.++...+.+|+|++++.+.+.++.+. .+.|||||||+.|..++.+++..+|++
T Consensus 474 KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDiv 553 (1049)
T PRK14845 474 NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLA 553 (1049)
T ss_pred cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEE
Confidence 999999999999999999999999999998874211 289999999999999999999999999
Q ss_pred EEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC-CCCh--------------hhHHhh-----------hhhccc
Q 008003 265 VLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP-AADP--------------ERVKNQ-----------LGAEGL 318 (581)
Q Consensus 265 llVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~-~~~~--------------~~~~~~-----------l~~~~~ 318 (581)
++|+|++++..+++.+++..+...++|+++|+||+|+. ++.. ++...+ +.+.++
T Consensus 554 lLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~ 633 (1049)
T PRK14845 554 VLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGF 633 (1049)
T ss_pred EEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCc
Confidence 99999999999999999999888899999999999995 3321 111111 233333
Q ss_pred h------hhhcCCcceEEEEeccCCCChhhHHHHHHHHHHH---hhcccccCCCcceEEEEEEeecCCCcEEEEEEeccE
Q 008003 319 E------LEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM---MNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGT 389 (581)
Q Consensus 319 ~------~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~---~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~Gt 389 (581)
. ..++++.++++++||+||+||++|+++|..+++. ..+..+++.++.++|+|++.++|.|++++++|.+|+
T Consensus 634 ~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~ 713 (1049)
T PRK14845 634 DADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGT 713 (1049)
T ss_pred chhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEcCE
Confidence 2 2456788999999999999999999998766542 235566788899999999999999999999999999
Q ss_pred EeeCcEEEEccc----cceEEEEEcc-----------cCCcccccCCCCcEEEe--ccCCCCCCCCeEEEeCCHHHHHHH
Q 008003 390 LVCGQHVVVGHE----WGRIRAIRDM-----------VGKSTDKARPAMPVEIE--GLKGLPMAGDDIIVVDSEERARML 452 (581)
Q Consensus 390 Lk~gd~i~~g~~----~~kVk~i~~~-----------~g~~v~~a~~~~~v~i~--gl~~~~~~Gd~~~~v~~~~~a~~~ 452 (581)
|++||.|++|+. +++||+|++. .+..++++.|+++|.|. ||.++ .+|+.|.++.++.+++++
T Consensus 714 Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~-~aG~~~~v~~~e~~~~~~ 792 (1049)
T PRK14845 714 LRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV-LAGSPIRIVPTKEKIEKA 792 (1049)
T ss_pred EecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcccc-CCCCeEEEeCCHHHHHHH
Confidence 999999999876 8999999853 35689999999999996 89887 999999999999887664
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeEEEeccCccchhhh
Q 008003 453 SSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDV 532 (581)
Q Consensus 453 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i~~~~vG~it~~Dv 532 (581)
|++..++.... ..+.+.+|+|||||++||+|||.++|+++. ++|++++||+||++||
T Consensus 793 ---~~~~~~~~~~~---------------~~~~~~~~vivKaDt~GSlEAl~~~L~~~~-----i~i~~~~vG~it~~DV 849 (1049)
T PRK14845 793 ---KEEVMKEVEEA---------------KIETDKEGILIKADTLGSLEALANELRKAG-----IPIKKAEVGDITKKDV 849 (1049)
T ss_pred ---HHHHHHHHhhh---------------ccCcceeeEEEEecccchHHHHHHHHHhCC-----CCEEEeeCCCCCHHHH
Confidence 33332222110 013567999999999999999999999875 7999999999999999
Q ss_pred hhhhc------cCCEEEEecCCCChhHHHHHHHHcCceEEEeeeecc
Q 008003 533 DLAQA------CGACIVGFNVKSPPTSVSQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 533 ~~A~~------~~~~I~~Fnv~~~~~~~~~~a~~~~v~i~~~~ii~~ 573 (581)
.+|++ .+|+|+||||++++++ +++|++.||+|++|+|||-
T Consensus 850 ~~A~~~~~~~~~~a~Il~FnV~v~~~a-~~~A~~~~V~I~~~~IIY~ 895 (1049)
T PRK14845 850 IEALSYKQENPLYGVILGFNVKVLPEA-QEEAEKYGVKIFVDNIIYK 895 (1049)
T ss_pred HHHHhhhccCCCCcEEEEecCCCCHHH-HHHHHHcCCeEEEeChHHH
Confidence 99998 5899999999999999 9999999999999999994
No 9
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=100.00 E-value=3.1e-50 Score=421.29 Aligned_cols=285 Identities=19% Similarity=0.217 Sum_probs=231.8
Q ss_pred ceeccCCCCCcccc-----ccchHHhhhhh---ccCCccccCCCchhhhHhhcCccccchhhhhhhhhhhhccccccccc
Q 008003 15 VVASKSLKYAPSSI-----TTSAESSCSCL---QGLRYHDVSMKVSLIRCFHASPELLARRRDEDSFGLKTARRESNKGK 86 (581)
Q Consensus 15 ~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~r~a~~Geft~raf~ngk~dl~~~q~e~~~~li~a~~~~~~~~ 86 (581)
.+|+.|++|++..+ ||++.++...| ...|+|+|+|||||+|||+||||||+ |||||+|||.|
T Consensus 67 l~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~GaR~AepGEFs~RAFLNgK~DLt--qAEai~dLI~A-------- 136 (454)
T COG0486 67 LYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKLGARLAEPGEFSKRAFLNGKLDLT--QAEAIADLIDA-------- 136 (454)
T ss_pred EEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHcCCeecCCCcchHHHHhcCCccHH--HHHHHHHHHhC--------
Confidence 35778888888554 78887777765 45789999999999999999999999 99999999999
Q ss_pred cccccCCCCCcccccCCCCCCcccccCCCcccccchhhHHHHHHHHhcCCHHHHHHHHHHcccccccCCCCCChhHHHH-
Q 008003 87 FRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVAEL- 165 (581)
Q Consensus 87 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~l~g~l~~~~~~l~~~L~~~~~~ie~~~~~~~~d~~~~- 165 (581)
+|+.|+ ++|+++|+|.++..+..|++.|+++.+++|...|+.++|....
T Consensus 137 ---~te~a~---------------------------r~A~~~l~G~ls~~i~~lr~~li~~~a~vEa~IDfpeedi~~~~ 186 (454)
T COG0486 137 ---KTEQAA---------------------------RIALRQLQGALSQLINELREALLELLAQVEANIDFPEEDIEELV 186 (454)
T ss_pred ---CCHHHH---------------------------HHHHHHcCCcHHHHHHHHHHHHHHHHHHheEeCCCCcccccchh
Confidence 999999 9999999999999999999999999999996666655543222
Q ss_pred ---HHHHhCC---cee-eecCCcCCCCCCCCCEEEEEccCCCCcchHhhhhhcc-cccccccCceeEeeeeEEEeecCCe
Q 008003 166 ---VVMELGF---NVR-RIHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQT-SLVAKEAGGITQHMGAFVVGMSTGA 237 (581)
Q Consensus 166 ---i~~~~~~---~~~-~l~~~~~~~~~~~~~~V~IvG~~n~GKSSLln~L~~~-~~~~~~~~g~T~d~~~~~~~~~~g~ 237 (581)
+...+.. .+. .+.....+..+++|.+++|+|.||+|||||+|+|.++ +.++++.||||||+....+.+ +|+
T Consensus 187 ~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-~G~ 265 (454)
T COG0486 187 LEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NGI 265 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-CCE
Confidence 2222221 122 2455888999999999999999999999999999986 568999999999999999999 999
Q ss_pred EEEEEeCCCcchhhHHHh--------hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhH
Q 008003 238 SITFLDTPGHAAFSAMRK--------RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV 309 (581)
Q Consensus 238 ~i~liDTpG~~~~~~~~~--------~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~ 309 (581)
++.++||+|.++.....+ ..+..||++++|+|++.+...++...+. ....+.|+++|+||+||........
T Consensus 266 pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~ 344 (454)
T COG0486 266 PVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELES 344 (454)
T ss_pred EEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccch
Confidence 999999999876554332 4678999999999999977777766666 4456789999999999975432111
Q ss_pred HhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHHH
Q 008003 310 KNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 310 ~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~ 352 (581)
. ......+++.+||++|+|++.|.+.|.....
T Consensus 345 ~-----------~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 345 E-----------KLANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred h-----------hccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 0 1122347899999999999999999987654
No 10
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=100.00 E-value=2.8e-45 Score=395.98 Aligned_cols=281 Identities=18% Similarity=0.152 Sum_probs=219.5
Q ss_pred ceeccCCCCCccc-----cccchHHhhhhhc---cCCccccCCCchhhhHhhcCccccchhhhhhhhhhhhccccccccc
Q 008003 15 VVASKSLKYAPSS-----ITTSAESSCSCLQ---GLRYHDVSMKVSLIRCFHASPELLARRRDEDSFGLKTARRESNKGK 86 (581)
Q Consensus 15 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~r~a~~Geft~raf~ngk~dl~~~q~e~~~~li~a~~~~~~~~ 86 (581)
+.++.|++|++.. +||+..+...+|+ ..|+|+|+|||||||||+||||||+ |||||+|||+|
T Consensus 57 ~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~g~R~A~pGEFT~RAflNGk~DL~--qaEav~dlI~a-------- 126 (442)
T TIGR00450 57 FKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKSGARLAQPGEFTQRAFLNGKMDLT--QAEAINELILA-------- 126 (442)
T ss_pred EEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHcCCeEcCCchhhHHHHhcCCccHH--HHHHHHHHHhC--------
Confidence 4678889998854 4888888888764 5699999999999999999999999 99999999999
Q ss_pred cccccCCCCCcccccCCCCCCcccccCCCcccccchhhHHHHHHHHhcCCHHHHHHHHHHcccccccCCCCCChhH-HHH
Q 008003 87 FRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDV-AEL 165 (581)
Q Consensus 87 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~l~g~l~~~~~~l~~~L~~~~~~ie~~~~~~~~d~-~~~ 165 (581)
+|+.|+ ++|+++|+|.++..+..|++.|+++.+.+|...|+.++|. ...
T Consensus 127 ---~t~~~~---------------------------~~A~~~l~G~ls~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~ 176 (442)
T TIGR00450 127 ---PNNKVK---------------------------DIALNKLAGELDQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQDS 176 (442)
T ss_pred ---CCHHHH---------------------------HHHHHhcCcHHHHHHHHHHHHHHHHHHHeeEECCcCCCCccHHH
Confidence 999999 9999999999999999999999999999996666655442 112
Q ss_pred HHHHhCC---ceee-ecCCcCCCCCCCCCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeEEE
Q 008003 166 VVMELGF---NVRR-IHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGASIT 240 (581)
Q Consensus 166 i~~~~~~---~~~~-l~~~~~~~~~~~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~i~ 240 (581)
+...+.. .+.. +... ..+..+.+++|+++|+||+|||||+|+|.+.. ..++..+|+|+|+....+.+ +|.++.
T Consensus 177 ~~~~l~~~~~~l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~-~g~~v~ 254 (442)
T TIGR00450 177 LNQLLLSIIAELKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL-NGILIK 254 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE-CCEEEE
Confidence 2211111 1111 2223 44677889999999999999999999999875 35678899999999888888 889999
Q ss_pred EEeCCCcchhhHH--------HhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhh
Q 008003 241 FLDTPGHAAFSAM--------RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQ 312 (581)
Q Consensus 241 liDTpG~~~~~~~--------~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~ 312 (581)
+|||||++++... ...+++.+|++++|+|++++...+.. .+..+...++|+|+|+||+|+...+. ..
T Consensus 255 l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~----~~ 329 (442)
T TIGR00450 255 LLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL----EF 329 (442)
T ss_pred EeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch----hh
Confidence 9999998655432 23577899999999999987655444 44555556889999999999964311 11
Q ss_pred hhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 313 LGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 313 l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
+. ..+ ..+++++||++ .|++++++.|....
T Consensus 330 ~~------~~~--~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 330 FV------SSK--VLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred hh------hhc--CCceEEEEEec-CCHHHHHHHHHHHH
Confidence 11 011 23689999998 69999999887644
No 11
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=100.00 E-value=1.4e-45 Score=400.47 Aligned_cols=280 Identities=20% Similarity=0.219 Sum_probs=221.3
Q ss_pred ceeccCCCCCccc-----cccchHHhhhhh---ccCCccccCCCchhhhHhhcCccccchhhhhhhhhhhhccccccccc
Q 008003 15 VVASKSLKYAPSS-----ITTSAESSCSCL---QGLRYHDVSMKVSLIRCFHASPELLARRRDEDSFGLKTARRESNKGK 86 (581)
Q Consensus 15 ~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~r~a~~Geft~raf~ngk~dl~~~q~e~~~~li~a~~~~~~~~ 86 (581)
..|+.|++|++.. +||+..+...++ ...|+|+|+|||||||||+||||||+ |||||.|||+|
T Consensus 65 ~~f~~P~S~TGEd~vEi~~HG~~~v~~~il~~l~~~g~r~A~pGEFt~RAflngk~dL~--qaEai~~li~a-------- 134 (449)
T PRK05291 65 LYFPAPNSFTGEDVVEIQCHGGPAVLNLILELLLALGARLAEPGEFTKRAFLNGKLDLT--QAEAIADLIDA-------- 134 (449)
T ss_pred EEecCCCCccCCcEEEEECCCCHHHHHHHHHHHHHcCCEEccCccchHHHHhcCCcCHH--HHHHHHHHHhC--------
Confidence 4578888888854 488888887776 45699999999999999999999999 99999999999
Q ss_pred cccccCCCCCcccccCCCCCCcccccCCCcccccchhhHHHHHHHHhcCCHHHHHHHHHHcccccccCCCCCChhHH---
Q 008003 87 FRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVA--- 163 (581)
Q Consensus 87 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~l~g~l~~~~~~l~~~L~~~~~~ie~~~~~~~~d~~--- 163 (581)
+|+.|+ ++|+++|+|.++..+..|++.|.++.+.+|...++.+++..
T Consensus 135 ---~t~~~~---------------------------~~al~~l~G~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~ 184 (449)
T PRK05291 135 ---KTEAAA---------------------------RLALRQLQGALSKLINELREELLELLALVEAAIDFPEEDIEFLS 184 (449)
T ss_pred ---CCHHHH---------------------------HHHHHhcCcHHHHHHHHHHHHHHHHHHHheEEccCCCCCccccc
Confidence 999999 99999999999999999999999999999865566554421
Q ss_pred -HHHHHH---hCCceee-ecCCcCCCCCCCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCe
Q 008003 164 -ELVVME---LGFNVRR-IHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGA 237 (581)
Q Consensus 164 -~~i~~~---~~~~~~~-l~~~~~~~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~ 237 (581)
+.+... +...+.. +...+.++..+++++|+++|+||+|||||+|+|.+... .+++.+|+|+|+....+.+ +|.
T Consensus 185 ~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~ 263 (449)
T PRK05291 185 DEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL-DGI 263 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE-CCe
Confidence 112111 1111222 12234556677889999999999999999999998764 5678899999999888888 789
Q ss_pred EEEEEeCCCcchhhHH--------HhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhH
Q 008003 238 SITFLDTPGHAAFSAM--------RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV 309 (581)
Q Consensus 238 ~i~liDTpG~~~~~~~--------~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~ 309 (581)
++.+|||||++++... ....+..+|++++|+|++++...+....+.. ..++|+++|+||+|+.......
T Consensus 264 ~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~- 340 (449)
T PRK05291 264 PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE- 340 (449)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh-
Confidence 9999999998765432 2246789999999999998766555555544 4578999999999996432111
Q ss_pred HhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 310 KNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 310 ~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
.....+++++||++|.|+++|+++|....
T Consensus 341 -------------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 341 -------------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred -------------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 01124789999999999999999998754
No 12
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-40 Score=351.04 Aligned_cols=365 Identities=30% Similarity=0.473 Sum_probs=283.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-----------------CeEEEEEeCCCcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-----------------GASITFLDTPGHA 248 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-----------------g~~i~liDTpG~~ 248 (581)
.-|.|.+||+||++.|||-|++.|++.++..++.+|+|+.++...+...+ -.-+.+||||||+
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 45789999999999999999999999999999999999999988876520 1258899999999
Q ss_pred hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC-CCC--h----------------h--
Q 008003 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP-AAD--P----------------E-- 307 (581)
Q Consensus 249 ~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~-~~~--~----------------~-- 307 (581)
.|..++.++.+.||++|+|+|+..|+.+|+++.++.++..+.|+||++||+|.. +|. + .
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF 631 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEF 631 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999984 221 0 0
Q ss_pred -----hHHhhhhhccchh------hhcCCcceEEEEeccCCCChhhHHHHHHHHHHH-hhcccccCCCcceEEEEEEeec
Q 008003 308 -----RVKNQLGAEGLEL------EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM-MNLKARVDGPAQAYVVEARLDK 375 (581)
Q Consensus 308 -----~~~~~l~~~~~~~------~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~-~~~~~~~~~~~~~~V~e~~~~~ 375 (581)
.+..++.+.++.. .+.+..+.++|+||.+|+||.+|+-+|..+... +..+........+.|+++...+
T Consensus 632 ~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvie 711 (1064)
T KOG1144|consen 632 KERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIE 711 (1064)
T ss_pred HHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeec
Confidence 0111122222221 234456789999999999999999999876542 2223334456789999999999
Q ss_pred CCCcEEEEEEeccEEeeCcEEEEccccc----eEEEEEccc--------CC--cccccCCCCcEEEe--ccCCCCCCCCe
Q 008003 376 GRGPLTTAIVKAGTLVCGQHVVVGHEWG----RIRAIRDMV--------GK--STDKARPAMPVEIE--GLKGLPMAGDD 439 (581)
Q Consensus 376 ~~G~v~~~~V~~GtLk~gd~i~~g~~~~----kVk~i~~~~--------g~--~v~~a~~~~~v~i~--gl~~~~~~Gd~ 439 (581)
|.|+.+.+++.+|.|+.||.|++.+..| .||.++..+ +. ..+++.+..-+.|. +|... ++|..
T Consensus 712 G~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEka-iaG~~ 790 (1064)
T KOG1144|consen 712 GHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKA-IAGTR 790 (1064)
T ss_pred CCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHH-hcCCe
Confidence 9999999999999999999998744433 456655432 22 23344555555554 33333 78999
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeE
Q 008003 440 IIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV 519 (581)
Q Consensus 440 ~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i 519 (581)
+.++..+..-..+ +.+.++..... ++ . .+...-+++|-|.+.||||||+++|.. +++++
T Consensus 791 l~VvgpeDd~e~l---k~~~m~dl~~~-l~----------~--Id~sgeGv~vqastlgslealleflk~-----~kIPv 849 (1064)
T KOG1144|consen 791 LLVVGPEDDIEEL---KEEAMEDLESV-LS----------R--IDKSGEGVYVQASTLGSLEALLEFLKT-----VKIPV 849 (1064)
T ss_pred eEEeCCcccHHHH---HHHHHHHHHHH-HH----------H--hhccCCceEEEecccchHHHHHHHHhh-----cCccc
Confidence 9888665544333 22222322110 00 0 134567899999999999999999976 56999
Q ss_pred EEeccCccchhhhhhhhcc------CCEEEEecCCCChhHHHHHHHHcCceEEEeeeecc
Q 008003 520 VHVGVGSVTQSDVDLAQAC------GACIVGFNVKSPPTSVSQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 520 ~~~~vG~it~~Dv~~A~~~------~~~I~~Fnv~~~~~~~~~~a~~~~v~i~~~~ii~~ 573 (581)
...|+|||...||+.|+++ .|+||+|+|++..+| +.+|.+.||+|+..+|||-
T Consensus 850 ~gi~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA-~e~Ad~~gVkIF~adiIYh 908 (1064)
T KOG1144|consen 850 SGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREA-RELADEMGVKIFCADIIYH 908 (1064)
T ss_pred ccccccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHH-HHHHHhhCceeeehhHHHH
Confidence 9999999999999999986 699999999999999 9999999999999999994
No 13
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-35 Score=306.23 Aligned_cols=272 Identities=21% Similarity=0.188 Sum_probs=199.2
Q ss_pred cCCccccCCCchhhhHhhcCccccchhhhhhhhhhhhccccccccccccccCCCCCcccccCCCCCCcccccCCCccccc
Q 008003 41 GLRYHDVSMKVSLIRCFHASPELLARRRDEDSFGLKTARRESNKGKFRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDI 120 (581)
Q Consensus 41 ~~~~r~a~~Geft~raf~ngk~dl~~~q~e~~~~li~a~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 120 (581)
..|+|+|+|||||+|||+|||+||+ |+|++.|||.| +|+.|+
T Consensus 151 ~~~ir~a~~geft~Raf~ngk~~Lt--q~eg~~~lI~a-----------~t~~q~------------------------- 192 (531)
T KOG1191|consen 151 IPGIRLAEPGEFTRRAFLNGKLDLT--QAEGIIDLIVA-----------ETESQR------------------------- 192 (531)
T ss_pred CCCccccCchhhhhhhhhccccchh--hhcChhhhhhh-----------hhHhhh-------------------------
Confidence 5789999999999999999999999 99999999999 999999
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHcccccccCCCCCChhHHHH------HHH--HhC-CceeeecCCcCCCCCCCCCE
Q 008003 121 FEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVAEL------VVM--ELG-FNVRRIHSSEGTEILPRPPV 191 (581)
Q Consensus 121 ~~~~a~~~l~g~l~~~~~~l~~~L~~~~~~ie~~~~~~~~d~~~~------i~~--~~~-~~~~~l~~~~~~~~~~~~~~ 191 (581)
..|+.++.|......-.|++.|+...+.++...++.++...+. ... .+. .....+...+..+.++.++.
T Consensus 193 --~~Al~~v~g~~~~l~~~~r~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~ 270 (531)
T KOG1191|consen 193 --RAALDEVAGEALALCFGWRKILIEALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNKADEIERLQSGLQ 270 (531)
T ss_pred --hhhhhhhcchhHHhhhhHHHHHHHHHhccceeechhhcCchhhccchhhhhHHHHHHHHHHHHHHhhhhHHHhhcCCe
Confidence 9999999999977777799999988887764333332211111 000 000 11112334667778889999
Q ss_pred EEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-h-------hHH-Hhhccccc
Q 008003 192 VTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-F-------SAM-RKRGAAVT 261 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-~-------~~~-~~~~~~~a 261 (581)
|+|+|+||+|||||+|+|.+++ .++++.+|||+|.....+.. +|+++.|.||||.++ . .-+ ....+..|
T Consensus 271 iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~a 349 (531)
T KOG1191|consen 271 IAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESNDGIEALGIERARKRIERA 349 (531)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-CCeEEEEEeccccccccCChhHHHhHHHHHHHHhhc
Confidence 9999999999999999998865 57899999999999999998 999999999999765 1 112 23567899
Q ss_pred cEEEEEEeccCCCChhHHHHHHHHhh------------cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcce-
Q 008003 262 DIVVLVVAADDGVMPQTLEAIAHANA------------ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQ- 328 (581)
Q Consensus 262 DivllVvDa~~g~~~~~~~~i~~~~~------------~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~- 328 (581)
|++++|+|+..+...++......+.. ...|+|++.||+|+...-.+.....+. +.....++..+
T Consensus 350 dvi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~---~~~~~~~~~~~i 426 (531)
T KOG1191|consen 350 DVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV---YPSAEGRSVFPI 426 (531)
T ss_pred CEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee---ccccccCcccce
Confidence 99999999977666666554444332 235789999999996431111100000 00011112234
Q ss_pred EEEEeccCCCChhhHHHHHHHHHHHhhc
Q 008003 329 VVEVSAVKKTGLDDLEVALLLQAEMMNL 356 (581)
Q Consensus 329 ii~iSAktg~gI~eLl~~L~~~~~~~~~ 356 (581)
..++||+|++|++.|.++|....+....
T Consensus 427 ~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 427 VVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred EEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 4559999999999999999886654433
No 14
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=6.7e-30 Score=285.38 Aligned_cols=237 Identities=27% Similarity=0.402 Sum_probs=195.6
Q ss_pred CEEEEEccCCCCcchHhhhhhcc---cccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT---SLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~---~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.+|+++|++|||||||+++|.+. .+.....+|+|.++....+.+ ++..+.|||||||+.|..++..++..+|++++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 37999999999999999999974 344455789999999888887 66999999999999999999999999999999
Q ss_pred EEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcC--CcceEEEEeccCCCChhh
Q 008003 267 VVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADP-ERVKNQLGAEGLELEDWG--GKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 267 VvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~--~~~~ii~iSAktg~gI~e 342 (581)
|+|++++..+++.+++..+...++| +|+|+||+|+.+.+. +.....+... +...+ ...+++++||++|+|+++
T Consensus 80 VVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~---l~~~~~~~~~~ii~vSA~tG~GI~e 156 (581)
T TIGR00475 80 VVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQI---LNSYIFLKNAKIFKTSAKTGQGIGE 156 (581)
T ss_pred EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHH---HHHhCCCCCCcEEEEeCCCCCCchh
Confidence 9999999999999999888888999 999999999974321 1112222111 11111 246899999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccC
Q 008003 343 LEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKAR 420 (581)
Q Consensus 343 Ll~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~ 420 (581)
+++.|....+...... .+.|+..+|.+++..+|.|++++|.+.+|++++||.|.+.+ ...+|++|.. +++.+++|.
T Consensus 157 L~~~L~~l~~~~~~~~-~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~-~~~~v~~a~ 234 (581)
T TIGR00475 157 LKKELKNLLESLDIKR-IQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQA-QNQDVEIAY 234 (581)
T ss_pred HHHHHHHHHHhCCCcC-cCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEE-CCccCCEEE
Confidence 9999987766554332 46788999999999999999999999999999999999975 4578999985 789999999
Q ss_pred CCCcEEEeccCCC
Q 008003 421 PAMPVEIEGLKGL 433 (581)
Q Consensus 421 ~~~~v~i~gl~~~ 433 (581)
||+++.| .+.++
T Consensus 235 aG~rval-~L~~i 246 (581)
T TIGR00475 235 AGQRIAL-NLMDV 246 (581)
T ss_pred CCCEEEE-EeCCC
Confidence 9999987 45443
No 15
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=1.3e-29 Score=274.75 Aligned_cols=251 Identities=28% Similarity=0.345 Sum_probs=193.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-------------------------------cccccCceeEeeeeEEEeecCC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-------------------------------VAKEAGGITQHMGAFVVGMSTG 236 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-------------------------------~~~~~~g~T~d~~~~~~~~~~g 236 (581)
..++|+++||+|+|||||+++|+.... .....+|+|+|.....+.+ ++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~ 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DK 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CC
Confidence 457899999999999999999974311 1122589999999999887 88
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccC--CCChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCChhhHHhhh
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD--GVMPQTLEAIAHANAANV-PIVVAINKCDKPAADPERVKNQL 313 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~--g~~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~~~~~~~~l 313 (581)
+.++|||||||++|...+..++..+|++++|+|+++ +...++.+++..+...+. |+++++||+|+.+.+.+.+....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999888888999999999999998 888888888888777776 59999999999754333222111
Q ss_pred hhccchhhhcC---CcceEEEEeccCCCChhh------------HHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCC
Q 008003 314 GAEGLELEDWG---GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRG 378 (581)
Q Consensus 314 ~~~~~~~~~~~---~~~~ii~iSAktg~gI~e------------Ll~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G 378 (581)
.+....+...+ ..++++++||++|+|+++ |+++|.. +..+....+.|+..+|.+++..++.|
T Consensus 164 ~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~---~~~~~~~~~~p~r~~i~~~~~~~g~G 240 (425)
T PRK12317 164 EEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN---LKPPEKPTDKPLRIPIQDVYSISGVG 240 (425)
T ss_pred HHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc---CCCCccccCCCcEEEEEEEEeeCCCe
Confidence 11111111121 136899999999999987 4454432 22223345678999999999999999
Q ss_pred cEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEEeccCCCC----CCCCeEEEeC
Q 008003 379 PLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP----MAGDDIIVVD 444 (581)
Q Consensus 379 ~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~----~~Gd~~~~v~ 444 (581)
++++|.|.+|++++||.|.+++ ...+|++|.. +++.++.|.||+++.+ .+.+++ ..|+.++...
T Consensus 241 ~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~-~~~~~~~a~aG~~v~i-~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 241 TVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEM-HHEELPQAEPGDNIGF-NVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred EEEEEEEeeccEecCCEEEECCCCCeEEEEEEEE-CCcccCEECCCCeEEE-EECCCCHHHccCccEecCCC
Confidence 9999999999999999999964 4678999985 6789999999999977 333332 4688877543
No 16
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.97 E-value=2.8e-29 Score=281.20 Aligned_cols=246 Identities=27% Similarity=0.403 Sum_probs=197.2
Q ss_pred CEEEEEccCCCCcchHhhhhhcc---cccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT---SLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~---~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
..|+++||+|||||||+++|.+. ........|+|.+.....+..+++..+.|||||||++|...+..++..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 36899999999999999999874 344455679999998777766567889999999999999999999999999999
Q ss_pred EEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcC-CcceEEEEeccCCCChhhH
Q 008003 267 VVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAAD-PERVKNQLGAEGLELEDWG-GKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 267 VvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~-~~~~ii~iSAktg~gI~eL 343 (581)
|+|+++++.+++.+++..+...++| +|+|+||+|+.+.. .+.....+.+ .+...+ ...+++++||++|+|+++|
T Consensus 81 VVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~---~l~~~~~~~~~ii~VSA~tG~gI~~L 157 (614)
T PRK10512 81 VVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKA---VLREYGFAEAKLFVTAATEGRGIDAL 157 (614)
T ss_pred EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHH---HHHhcCCCCCcEEEEeCCCCCCCHHH
Confidence 9999999999999999988888888 57999999996421 1112222221 111111 2468999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCC
Q 008003 344 EVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARP 421 (581)
Q Consensus 344 l~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~ 421 (581)
+++|.... ....+.+.|+..+|.+++..+|.|++++|.+.+|++++||.|.+.+ ...+||+|.. ++..+++|.|
T Consensus 158 ~~~L~~~~---~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~-~~~~v~~a~a 233 (614)
T PRK10512 158 REHLLQLP---EREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHA-QNQPTEQAQA 233 (614)
T ss_pred HHHHHHhh---ccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEec-CCcCCCEEeC
Confidence 99997643 2233356788999999999999999999999999999999999854 4568999985 7889999999
Q ss_pred CCcEEEeccCC-C----CCCCCeEEEe
Q 008003 422 AMPVEIEGLKG-L----PMAGDDIIVV 443 (581)
Q Consensus 422 ~~~v~i~gl~~-~----~~~Gd~~~~v 443 (581)
|+++.+ ++.+ + -..|++++..
T Consensus 234 G~rval-~l~g~~~~~~i~rGdvl~~~ 259 (614)
T PRK10512 234 GQRIAL-NIAGDAEKEQINRGDWLLAD 259 (614)
T ss_pred CCeEEE-EecCCCChhhCCCcCEEeCC
Confidence 999977 3332 2 2578988854
No 17
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.97 E-value=6.3e-29 Score=277.13 Aligned_cols=251 Identities=30% Similarity=0.383 Sum_probs=203.0
Q ss_pred CEEEEEccCCCCcchHhhhhhccc--cc--------------ccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHH
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTS--LV--------------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM 253 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~--~~--------------~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~ 253 (581)
.+|+|+||+|||||||+++|+... +. .....|+|.......+.+ +++.++|||||||.+|...
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFGGE 80 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHHHH
Confidence 589999999999999999997531 10 123468898888888888 8899999999999999999
Q ss_pred HhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchh--hhcCCcceEEE
Q 008003 254 RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLEL--EDWGGKVQVVE 331 (581)
Q Consensus 254 ~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~--~~~~~~~~ii~ 331 (581)
+.++++.+|++++|+|+.+|...++..++..+...++|+|+|+||+|+.+.+...+...+...-..+ ......+|+++
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~ 160 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVY 160 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEe
Confidence 9999999999999999999999999999999999999999999999997655544433332221100 00112468999
Q ss_pred EeccCCC----------ChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc
Q 008003 332 VSAVKKT----------GLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE 401 (581)
Q Consensus 332 iSAktg~----------gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~ 401 (581)
+||++|. |++.|++.|.... +.+..+++.|+.++|..++.+++.|.++.++|.+|+|+.||.|.+.+.
T Consensus 161 ~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l--P~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~ 238 (594)
T TIGR01394 161 ASGRAGWASLDLDDPSDNMAPLFDAIVRHV--PAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKR 238 (594)
T ss_pred chhhcCcccccCcccccCHHHHHHHHHHhC--CCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecC
Confidence 9999996 7999999987643 334445678999999999999999999999999999999999998654
Q ss_pred -----cceEEEEEc---ccCCcccccCCCCcEEEeccCCCCCCCCeEEEeC
Q 008003 402 -----WGRIRAIRD---MVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVD 444 (581)
Q Consensus 402 -----~~kVk~i~~---~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~ 444 (581)
..+|+.|.. .+...+++|.+|+.+.+.|+.++ ..||+++...
T Consensus 239 ~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i-~~Gdtl~~~~ 288 (594)
T TIGR01394 239 DGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI-NIGETIADPE 288 (594)
T ss_pred CCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc-CCCCEEeCCC
Confidence 357777764 45578999999999999999886 6799997544
No 18
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.2e-28 Score=254.27 Aligned_cols=254 Identities=26% Similarity=0.321 Sum_probs=206.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc-------------------------------cccccccCceeEeeeeEEEeecC
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT-------------------------------SLVAKEAGGITQHMGAFVVGMST 235 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~-------------------------------~~~~~~~~g~T~d~~~~~~~~~~ 235 (581)
+...+++++||+++|||||+.+|+.+ +.......|+|.++....+++ +
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~ 83 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-D 83 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-C
Confidence 34578999999999999999999431 011223579999999999998 7
Q ss_pred CeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCC-------CChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChh
Q 008003 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-------VMPQTLEAIAHANAANVP-IVVAINKCDKPAADPE 307 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g-------~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~ 307 (581)
.+.++++|+|||++|...+..++++||++|||+|++.+ ...|+++++-.+...++. +||++||||+.+++.+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence 88999999999999999999999999999999999997 789999999999988987 9999999999999888
Q ss_pred hHHhhhhhccchhhhcC---CcceEEEEeccCCCChhh------------HHHHHHHHHHHhhcccccCCCcceEEEEEE
Q 008003 308 RVKNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVEAR 372 (581)
Q Consensus 308 ~~~~~l~~~~~~~~~~~---~~~~ii~iSAktg~gI~e------------Ll~~L~~~~~~~~~~~~~~~~~~~~V~e~~ 372 (581)
++.+...+.....+..+ .+++|+||||.+|+|+.+ |+++|.. ...+..+.+.|+..+|.+++
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd~---~~~p~~~~d~Plr~pI~~v~ 240 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQ---LEPPERPLDKPLRLPIQDVY 240 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHhc---cCCCCCCCCCCeEeEeeeEE
Confidence 77665554444333443 257899999999999864 5666652 22233347889999999999
Q ss_pred eecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEEeccCCCC----CCCCeEEEeCCH
Q 008003 373 LDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP----MAGDDIIVVDSE 446 (581)
Q Consensus 373 ~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~----~~Gd~~~~v~~~ 446 (581)
...+.|++..|+|.+|.|++||.|++.+ ..+.|+++.. +.+++..+.||+.+.+ .+.+++ ..||++....+.
T Consensus 241 ~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~-~~~~~~~a~~GD~i~~-~vrgv~~~dI~~Gdv~~~~~n~ 318 (428)
T COG5256 241 SISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEM-HHEEISQAEPGDNVGF-NVRGVEKNDIRRGDVIGHSDNP 318 (428)
T ss_pred EecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeee-cccccccCCCCCeEEE-EecCCchhccCCccEeccCCCC
Confidence 9999999999999999999999999965 4678999986 5888999999999865 333322 478877655553
No 19
>PRK12736 elongation factor Tu; Reviewed
Probab=99.96 E-value=1.1e-28 Score=264.59 Aligned_cols=252 Identities=27% Similarity=0.316 Sum_probs=195.2
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc-------c---------cccccCceeEeeeeEEEeecCCeEEEEEeCCCcch
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS-------L---------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~-------~---------~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~ 249 (581)
.+...+|+++||+|+|||||+++|++.. . .....+|+|.+.....+.. ++..++|+|||||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence 3456899999999999999999997521 0 1223679999998777765 678999999999999
Q ss_pred hhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcC--
Q 008003 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADP--ERVKNQLGAEGLELEDWG-- 324 (581)
Q Consensus 250 ~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~-- 324 (581)
|...+..++..+|++++|+|+++|...++.+++..+...++| +|+++||+|+.+... +.+..++... +...+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~---l~~~~~~ 164 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVREL---LSEYDFP 164 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHH---HHHhCCC
Confidence 999999999999999999999999999999999999989999 678999999963211 1111122211 11111
Q ss_pred -CcceEEEEeccCCC--------ChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcE
Q 008003 325 -GKVQVVEVSAVKKT--------GLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQH 395 (581)
Q Consensus 325 -~~~~ii~iSAktg~--------gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~ 395 (581)
..++++++||++|. ++++|++.|.... +.+..+.+.|+..+|.+++..++.|++++|+|.+|+|+.||.
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l--p~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~ 242 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI--PTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDE 242 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC--CCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCE
Confidence 24689999999983 5677777776542 223344577899999999999999999999999999999999
Q ss_pred EEEcc----ccceEEEEEcccCCcccccCCCCcEEE--eccCCC-CCCCCeEEEeC
Q 008003 396 VVVGH----EWGRIRAIRDMVGKSTDKARPAMPVEI--EGLKGL-PMAGDDIIVVD 444 (581)
Q Consensus 396 i~~g~----~~~kVk~i~~~~g~~v~~a~~~~~v~i--~gl~~~-~~~Gd~~~~v~ 444 (581)
|++.+ ...+|++|.. +++.+++|.||+++.+ .+++.. -..|++++...
T Consensus 243 v~i~p~~~~~~~~V~sI~~-~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 243 VEIVGIKETQKTVVTGVEM-FRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred EEEecCCCCeEEEEEEEEE-CCEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 98843 3468999975 6889999999999966 454321 14788887654
No 20
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.96 E-value=1.8e-28 Score=266.10 Aligned_cols=251 Identities=25% Similarity=0.259 Sum_probs=197.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc-------------------------------ccccccCceeEeeeeEEEeecC
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS-------------------------------LVAKEAGGITQHMGAFVVGMST 235 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~-------------------------------~~~~~~~g~T~d~~~~~~~~~~ 235 (581)
....+|+++||+++|||||+.+|+... .......|+|.+.....+.+ +
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~ 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-C
Confidence 345789999999999999999996410 01123568999998888887 8
Q ss_pred CeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCC-------ChhHHHHHHHHhhcCCC-EEEEEeCCCCC--CCC
Q 008003 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-------MPQTLEAIAHANAANVP-IVVAINKCDKP--AAD 305 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-------~~~~~~~i~~~~~~~~p-iIvViNK~Dl~--~~~ 305 (581)
++.++|+|||||++|...+..++..+|++++|+|+++|. ..|+.+++..+...++| +|+++||+|.. +++
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~ 163 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYS 163 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhh
Confidence 899999999999999999999999999999999999987 47999999999999998 67999999953 334
Q ss_pred hhhHHhhhhhccchhhhcC---CcceEEEEeccCCCChhh------------HHHHHHHHHHHhhcccccCCCcceEEEE
Q 008003 306 PERVKNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVE 370 (581)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~---~~~~ii~iSAktg~gI~e------------Ll~~L~~~~~~~~~~~~~~~~~~~~V~e 370 (581)
.+++.....+....+...+ ..++++|+||.+|+|+.+ |+++|... ..+....+.|+..+|.+
T Consensus 164 ~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~---~~~~~~~~~p~r~~I~~ 240 (446)
T PTZ00141 164 QERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL---EPPKRPVDKPLRLPLQD 240 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC---CCCCcCCCCCeEEEEEE
Confidence 3443333333222222222 257999999999999964 66666432 22333456789999999
Q ss_pred EEeecCCCcEEEEEEeccEEeeCcEEEEccc--cceEEEEEcccCCcccccCCCCcEEEeccCCCC----CCCCeEEEe
Q 008003 371 ARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP----MAGDDIIVV 443 (581)
Q Consensus 371 ~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~----~~Gd~~~~v 443 (581)
++..++.|++++|.|.+|+|++||.|.+.+. ..+|++|.. +++.++.|.||+++.+ .|.++. ..|++++..
T Consensus 241 v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~-~~~~~~~a~aG~~v~i-~L~~i~~~~v~rG~vl~~~ 317 (446)
T PTZ00141 241 VYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEM-HHEQLAEAVPGDNVGF-NVKNVSVKDIKRGYVASDS 317 (446)
T ss_pred EEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEe-cCcccCEECCCCEEEE-EECCCCHHHcCCceEEecC
Confidence 9999999999999999999999999999754 568999975 6789999999999987 555432 368888764
No 21
>PRK12735 elongation factor Tu; Reviewed
Probab=99.96 E-value=1.7e-28 Score=263.34 Aligned_cols=251 Identities=27% Similarity=0.333 Sum_probs=194.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc-------cc---------cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT-------SL---------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~-------~~---------~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~ 250 (581)
+...+|+++||+|+|||||+++|++. ++ .....+|+|.+.....+.. ++..++|+|||||++|
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHADY 88 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHHH
Confidence 45578999999999999999999752 11 1223679999988777765 6789999999999999
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEE-EEEeCCCCCCCCh--hhHHhhhhhccchhhhcC---
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV-VAINKCDKPAADP--ERVKNQLGAEGLELEDWG--- 324 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piI-vViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~--- 324 (581)
...+..++..+|++++|+|+.++...++.+++..+...++|.+ +++||+|+.+... +....++... +..++
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~---l~~~~~~~ 165 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL---LSKYDFPG 165 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH---HHHcCCCc
Confidence 9999999999999999999999999999999999888899955 6899999964211 1111122111 12221
Q ss_pred CcceEEEEeccCCC----------ChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCc
Q 008003 325 GKVQVVEVSAVKKT----------GLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQ 394 (581)
Q Consensus 325 ~~~~ii~iSAktg~----------gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd 394 (581)
..++++++||++|. ++.+|+++|..... .+..+.+.|+..+|.+++..++.|++++|+|.+|++++||
T Consensus 166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~--~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd 243 (396)
T PRK12735 166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP--EPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGD 243 (396)
T ss_pred CceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC--CCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCC
Confidence 24789999999994 57778888765422 2334467789999999999999999999999999999999
Q ss_pred EEEEcc----ccceEEEEEcccCCcccccCCCCcEEE--eccCCC-CCCCCeEEEeC
Q 008003 395 HVVVGH----EWGRIRAIRDMVGKSTDKARPAMPVEI--EGLKGL-PMAGDDIIVVD 444 (581)
Q Consensus 395 ~i~~g~----~~~kVk~i~~~~g~~v~~a~~~~~v~i--~gl~~~-~~~Gd~~~~v~ 444 (581)
.|.+.+ ...+|++|.. +++.+++|.||+++.+ .|++.. -..|++++...
T Consensus 244 ~v~i~p~~~~~~~~VksI~~-~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 244 EVEIVGIKETQKTTVTGVEM-FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred EEEEecCCCCeEEEEEEEEE-CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 999864 3457999974 6889999999999977 343321 14788887654
No 22
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=2.5e-28 Score=264.77 Aligned_cols=252 Identities=26% Similarity=0.334 Sum_probs=192.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc--c-----------------------------cccccCceeEeeeeEEEeecC
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS--L-----------------------------VAKEAGGITQHMGAFVVGMST 235 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~--~-----------------------------~~~~~~g~T~d~~~~~~~~~~ 235 (581)
....+|+++||+|+|||||+++|+... + ......|+|.|.....+.+ +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-D 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-C
Confidence 456789999999999999999997421 0 0123469999999988887 7
Q ss_pred CeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCC---CChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCChhhHHh
Q 008003 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG---VMPQTLEAIAHANAANV-PIVVAINKCDKPAADPERVKN 311 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g---~~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~~~~~~~ 311 (581)
+..++|||||||++|...+..++..+|++++|+|++++ ...++.+++..+...+. |+|+|+||+|+.+.+.+.+..
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 89999999999999998888889999999999999998 66777777666655554 589999999997544333222
Q ss_pred hhhhccchhhhcC---CcceEEEEeccCCCChhh------------HHHHHHHHHHHhhcccccCCCcceEEEEEEeecC
Q 008003 312 QLGAEGLELEDWG---GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVEARLDKG 376 (581)
Q Consensus 312 ~l~~~~~~~~~~~---~~~~ii~iSAktg~gI~e------------Ll~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~ 376 (581)
...+....+...+ ..++++++||++|.|+++ |+++|.. ...+....+.|+..+|.+++..+|
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~---~~~~~~~~~~p~r~~i~~v~~~~g 240 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA---LEPPEKPTDKPLRIPIQDVYSITG 240 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc---CCCCCCccCCCcEEEEEEEEecCC
Confidence 1111111111221 246899999999999986 6666543 223333456789999999999999
Q ss_pred CCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEEeccCCCC----CCCCeEEEeC
Q 008003 377 RGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP----MAGDDIIVVD 444 (581)
Q Consensus 377 ~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~----~~Gd~~~~v~ 444 (581)
.|++++|+|.+|+++.||.|.+++ ...+|++|.. +++.+++|.||+++.+ .+.+++ ..|+.++...
T Consensus 241 ~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~-~~~~~~~a~aG~~v~i-~l~~i~~~~i~rG~vl~~~~ 312 (426)
T TIGR00483 241 VGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEM-HHEQIEQAEPGDNIGF-NVRGVSKKDIRRGDVCGHPD 312 (426)
T ss_pred CeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEE-CCcccCEEcCCCEEEE-EECCCChhhcccceEEecCC
Confidence 999999999999999999999965 4678999974 6788999999999987 444432 3688877543
No 23
>PRK10218 GTP-binding protein; Provisional
Probab=99.96 E-value=4.4e-28 Score=270.10 Aligned_cols=252 Identities=29% Similarity=0.332 Sum_probs=202.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc--cc--------------ccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS--LV--------------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~--~~--------------~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~ 250 (581)
.+..+|+|+||+|||||||+++|+... +. .....|+|.......+.+ ++..++|||||||.+|
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df 81 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADF 81 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchh
Confidence 356789999999999999999998621 11 122468888888888887 8899999999999999
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccch--hhhcCCcce
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLE--LEDWGGKVQ 328 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 328 (581)
...+..+++.+|++|+|+|+.++...++..++..+...++|.|+++||+|+.+.+.+.....+...-.. ......++|
T Consensus 82 ~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P 161 (607)
T PRK10218 82 GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP 161 (607)
T ss_pred HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence 999999999999999999999999999999999888899999999999999876665544444332111 111113478
Q ss_pred EEEEeccCCC----------ChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEE
Q 008003 329 VVEVSAVKKT----------GLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVV 398 (581)
Q Consensus 329 ii~iSAktg~----------gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~ 398 (581)
++++||++|. |+..|++.|.... +.+..+++.|+.++|..++.+++.|.+++++|.+|+|+.||.|.+
T Consensus 162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i--P~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~ 239 (607)
T PRK10218 162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV--PAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTI 239 (607)
T ss_pred EEEeEhhcCcccCCccccccchHHHHHHHHHhC--CCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEE
Confidence 9999999998 5788888876643 333445678999999999999999999999999999999999988
Q ss_pred ccc-----cceEEEE---EcccCCcccccCCCCcEEEeccCCCCCCCCeEEE
Q 008003 399 GHE-----WGRIRAI---RDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIV 442 (581)
Q Consensus 399 g~~-----~~kVk~i---~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~ 442 (581)
.+. ..+|..| .+.+...+++|.+|+.+.+.|+.++ ..||+++.
T Consensus 240 ~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GdTl~~ 290 (607)
T PRK10218 240 IDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL-NISDTVCD 290 (607)
T ss_pred ecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc-ccCcEEec
Confidence 543 2455554 4556778999999999999999886 68888864
No 24
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.96 E-value=1e-27 Score=267.99 Aligned_cols=296 Identities=25% Similarity=0.306 Sum_probs=220.6
Q ss_pred CCEEEEEccCCCCcchHhhhhhccccc---------------ccccCceeEeeeeEEEeec----CCeEEEEEeCCCcch
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLV---------------AKEAGGITQHMGAFVVGMS----TGASITFLDTPGHAA 249 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~---------------~~~~~g~T~d~~~~~~~~~----~g~~i~liDTpG~~~ 249 (581)
..+|+|+||+|||||||+++|+..... .....|+|.+.....+.+. ..+.++|||||||.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 468999999999999999999764210 1123578877666555442 237899999999999
Q ss_pred hhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cchhhhcCCcce
Q 008003 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GLELEDWGGKVQ 328 (581)
Q Consensus 250 ~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 328 (581)
|...+.++++.+|++|+|+|++++...++...+..+...++|+++|+||+|+.+.+.+.....+... +. ...+
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~------~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGL------DASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCC------Ccce
Confidence 9999999999999999999999999999988887777788999999999999755443333333221 11 1125
Q ss_pred EEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc--cceEE
Q 008003 329 VVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIR 406 (581)
Q Consensus 329 ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~kVk 406 (581)
++++||++|.|+++|+++|... ++.+..+++.|+.++|++++.+++.|.+++++|.+|+|+.||.|.+.+. ..+|+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~--lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~ 234 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKR--VPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVD 234 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHh--CCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEe
Confidence 8999999999999999999764 3445556788999999999999999999999999999999999988543 34566
Q ss_pred EEE--cccCCcccccCCCCcEEEe-ccCCCC--CCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCC
Q 008003 407 AIR--DMVGKSTDKARPAMPVEIE-GLKGLP--MAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSED 481 (581)
Q Consensus 407 ~i~--~~~g~~v~~a~~~~~v~i~-gl~~~~--~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (581)
.+. ..+...+.++.+|+.+.+. |+++.. ..||+++...+.. .. .+. ..
T Consensus 235 ~i~~~~~~~~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~--~~-----------------------~l~--~~ 287 (595)
T TIGR01393 235 EVGVFTPKLTKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPA--KE-----------------------PLP--GF 287 (595)
T ss_pred EEEEecCCceECCEEcCCCEEEEeccccccCccCCCCEEECCCCcc--cc-----------------------CCC--CC
Confidence 653 2333678899999977664 554321 5899997644321 00 000 00
Q ss_pred CCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeE
Q 008003 482 VPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV 519 (581)
Q Consensus 482 ~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i 519 (581)
..-.+.+..-+.+...+..+.|.++|.++.-++..+.+
T Consensus 288 ~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~ 325 (595)
T TIGR01393 288 KEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTY 325 (595)
T ss_pred cCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEE
Confidence 01234455667888899999999999999987766654
No 25
>CHL00071 tufA elongation factor Tu
Probab=99.96 E-value=4.6e-28 Score=260.99 Aligned_cols=252 Identities=27% Similarity=0.289 Sum_probs=192.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc----------------ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS----------------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~----------------~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~ 250 (581)
....+|+++||+|+|||||+|+|++.. ......+|+|.+.....+.. ++..+.|+|||||++|
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY 88 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHHH
Confidence 345789999999999999999998641 11223489999998877766 7789999999999999
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhhHHhhhh-hccchhhhcC---C
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQLG-AEGLELEDWG---G 325 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~~~~~l~-~~~~~~~~~~---~ 325 (581)
...+.+++..+|++++|+|+..+...++.+++..+...++| +|+++||+|+.+.. ...+.+. +....+...+ .
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~--~~~~~~~~~l~~~l~~~~~~~~ 166 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE--ELLELVELEVRELLSKYDFPGD 166 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH--HHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999989999 77899999997432 1111111 1111122211 2
Q ss_pred cceEEEEeccCCCCh------------------hhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEec
Q 008003 326 KVQVVEVSAVKKTGL------------------DDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKA 387 (581)
Q Consensus 326 ~~~ii~iSAktg~gI------------------~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~ 387 (581)
.++++++||++|.|+ ..|+++|.... +.+..+.+.|+..+|.+++..++.|++++|+|.+
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~--~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~s 244 (409)
T CHL00071 167 DIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI--PTPERDTDKPFLMAIEDVFSITGRGTVATGRIER 244 (409)
T ss_pred cceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC--CCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEec
Confidence 479999999999743 45555554322 1223345678999999999999999999999999
Q ss_pred cEEeeCcEEEEcc----ccceEEEEEcccCCcccccCCCCcEEEe--ccCCC-CCCCCeEEEeC
Q 008003 388 GTLVCGQHVVVGH----EWGRIRAIRDMVGKSTDKARPAMPVEIE--GLKGL-PMAGDDIIVVD 444 (581)
Q Consensus 388 GtLk~gd~i~~g~----~~~kVk~i~~~~g~~v~~a~~~~~v~i~--gl~~~-~~~Gd~~~~v~ 444 (581)
|+++.||.|.+.+ ...+|++|.. +++.+++|.||+.+.+. ++... -..|+.++...
T Consensus 245 G~l~~Gd~v~i~p~~~~~~~~VksI~~-~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 245 GTVKVGDTVEIVGLRETKTTTVTGLEM-FQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred CEEeeCCEEEEeeCCCCcEEEEEEEEE-cCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 9999999998632 3468999975 66789999999999663 44321 14788887654
No 26
>PLN03127 Elongation factor Tu; Provisional
Probab=99.96 E-value=6.2e-28 Score=261.47 Aligned_cols=250 Identities=28% Similarity=0.322 Sum_probs=192.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc------c----------ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT------S----------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~------~----------~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~ 250 (581)
+..++|+++||+|+|||||+++|.+. . ......+|+|++.....+.. ++..++|+|||||++|
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHADY 137 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccch
Confidence 45688999999999999999999631 1 11233489999998888876 7789999999999999
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhhHHhhhh-hccchhh--hc-CC
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQLG-AEGLELE--DW-GG 325 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~~~~~l~-~~~~~~~--~~-~~ 325 (581)
...+..++..+|++++|+|+.++...++.+++..+...++| +|+++||+|+.+. +...+.+. +....+. .+ ..
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~--~~~~~~i~~~i~~~l~~~~~~~~ 215 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDD--EELLELVEMELRELLSFYKFPGD 215 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCH--HHHHHHHHHHHHHHHHHhCCCCC
Confidence 99888888999999999999999999999999999999999 5789999999742 11111111 1111111 11 23
Q ss_pred cceEEEEecc---CCCC-------hhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcE
Q 008003 326 KVQVVEVSAV---KKTG-------LDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQH 395 (581)
Q Consensus 326 ~~~ii~iSAk---tg~g-------I~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~ 395 (581)
.+|++++||. +|.| +.+|+++|.... +.+....+.|+..+|.+++..+|.|++++|+|.+|.+++||.
T Consensus 216 ~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l--p~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~ 293 (447)
T PLN03127 216 EIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI--PEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 293 (447)
T ss_pred cceEEEeccceeecCCCcccccchHHHHHHHHHHhC--CCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCE
Confidence 5789999886 5555 667777776542 223344567889999999999999999999999999999999
Q ss_pred EEEcc------ccceEEEEEcccCCcccccCCCCcEEEeccCCCC----CCCCeEEEe
Q 008003 396 VVVGH------EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP----MAGDDIIVV 443 (581)
Q Consensus 396 i~~g~------~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~----~~Gd~~~~v 443 (581)
|.+.+ ...+|++|.. +++.+.+|.||+++.+ .+.++. ..|++++..
T Consensus 294 v~i~p~~~~g~~~~~VksI~~-~~~~v~~a~aGd~v~l-~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 294 VEIVGLRPGGPLKTTVTGVEM-FKKILDQGQAGDNVGL-LLRGLKREDVQRGQVICKP 349 (447)
T ss_pred EEEcccCCCCcEEEEEEEEEE-ECcEeCEEcCCCEEEE-EeCCCCHHHCCCccEEecC
Confidence 97742 3568999974 6788999999999977 334321 478888865
No 27
>PRK00049 elongation factor Tu; Reviewed
Probab=99.96 E-value=9.5e-28 Score=257.43 Aligned_cols=251 Identities=27% Similarity=0.338 Sum_probs=193.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc----------------ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS----------------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~----------------~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~ 250 (581)
+...+|+++||+|+|||||+++|++.. ......+|+|.+.....+.. ++..++|+|||||.+|
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHADY 88 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHHH
Confidence 455789999999999999999997621 01223679999998777765 7789999999999999
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEE-EEEeCCCCCCCCh--hhHHhhhhhccchhhhc---C
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV-VAINKCDKPAADP--ERVKNQLGAEGLELEDW---G 324 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piI-vViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~---~ 324 (581)
...+..++..+|++++|+|+.++...++.+++..+...++|.+ +++||+|+.+... +....++.. .+... .
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~---~l~~~~~~~ 165 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRE---LLSKYDFPG 165 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHH---HHHhcCCCc
Confidence 9999899999999999999999999999999999998999975 6899999964211 111112211 11111 2
Q ss_pred CcceEEEEeccCCC----------ChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCc
Q 008003 325 GKVQVVEVSAVKKT----------GLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQ 394 (581)
Q Consensus 325 ~~~~ii~iSAktg~----------gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd 394 (581)
..++++++||++|. |+..|+++|..... .+....+.|+..+|.++|..+|.|++++|.|.+|++++||
T Consensus 166 ~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~--~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd 243 (396)
T PRK00049 166 DDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP--TPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGE 243 (396)
T ss_pred cCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC--CCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCC
Confidence 35799999999985 46677777765322 2233456789999999999999999999999999999999
Q ss_pred EEEEcc----ccceEEEEEcccCCcccccCCCCcEEE--eccCCC-CCCCCeEEEeC
Q 008003 395 HVVVGH----EWGRIRAIRDMVGKSTDKARPAMPVEI--EGLKGL-PMAGDDIIVVD 444 (581)
Q Consensus 395 ~i~~g~----~~~kVk~i~~~~g~~v~~a~~~~~v~i--~gl~~~-~~~Gd~~~~v~ 444 (581)
.|.+.+ ...+|++|.. +++.+..|.+|+++.+ .++... -..|+.++...
T Consensus 244 ~v~i~p~~~~~~~~VksI~~-~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 244 EVEIVGIRDTQKTTVTGVEM-FRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred EEEEeecCCCceEEEEEEEE-CCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 998743 4568999974 6789999999999977 333211 14788887644
No 28
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.96 E-value=1.2e-27 Score=259.53 Aligned_cols=251 Identities=23% Similarity=0.255 Sum_probs=194.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc-------------------------------ccccccCceeEeeeeEEEeecC
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS-------------------------------LVAKEAGGITQHMGAFVVGMST 235 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~-------------------------------~~~~~~~g~T~d~~~~~~~~~~ 235 (581)
+...+|+++||+++|||||+.+|+... .......|+|.+.....+.+ +
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-T 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-C
Confidence 445789999999999999999985310 01123468999998888887 7
Q ss_pred CeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCC-------hhHHHHHHHHhhcCCC-EEEEEeCCCCCC--CC
Q 008003 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVM-------PQTLEAIAHANAANVP-IVVAINKCDKPA--AD 305 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~-------~~~~~~i~~~~~~~~p-iIvViNK~Dl~~--~~ 305 (581)
++.++|+|||||++|...+..++..+|++|+|+|+++|.. .++.+++..+...++| +|+++||+|+.. ++
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~ 163 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYS 163 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhh
Confidence 8999999999999999999999999999999999998742 6899999998889996 788999999862 22
Q ss_pred hhhHHhhhhhccchhhhcC---CcceEEEEeccCCCChhh------------HHHHHHHHHHHhhcccccCCCcceEEEE
Q 008003 306 PERVKNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVE 370 (581)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~---~~~~ii~iSAktg~gI~e------------Ll~~L~~~~~~~~~~~~~~~~~~~~V~e 370 (581)
..++.....+....+...+ ..++++|+||++|+|+.+ |+++|.. +..+....+.|+..+|.+
T Consensus 164 ~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~---i~~p~~~~~~plr~~I~~ 240 (447)
T PLN00043 164 KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ---INEPKRPSDKPLRLPLQD 240 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh---cCCCccccCCCcEEEEEE
Confidence 2233222222222222222 246899999999999864 5555543 233344567889999999
Q ss_pred EEeecCCCcEEEEEEeccEEeeCcEEEEccc--cceEEEEEcccCCcccccCCCCcEEEeccCCCC----CCCCeEEEe
Q 008003 371 ARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP----MAGDDIIVV 443 (581)
Q Consensus 371 ~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~----~~Gd~~~~v 443 (581)
++..++.|++++|+|.+|++++||.|.+++. ..+|++|.. +++.+.+|.||+.+.+ .|.+.. ..|++++..
T Consensus 241 v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~-~~~~v~~a~aGd~v~i-~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 241 VYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEM-HHESLQEALPGDNVGF-NVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred EEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEE-CCeEeCEecCCCeEEE-EECCCCHhhCCCccEEccC
Confidence 9999999999999999999999999999764 568999974 6889999999999977 444431 478888764
No 29
>PLN03126 Elongation factor Tu; Provisional
Probab=99.96 E-value=1.5e-27 Score=259.87 Aligned_cols=251 Identities=27% Similarity=0.296 Sum_probs=193.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc----------------ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS----------------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~----------------~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~ 250 (581)
+..++|+++||+|+|||||+++|+... .......|+|.+.....+.+ ++..++|+|||||++|
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~f 157 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADY 157 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHHH
Confidence 456789999999999999999998521 12234579999998888877 7889999999999999
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhhHHhhhh-hccchhhhc---CC
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQLG-AEGLELEDW---GG 325 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~~~~~l~-~~~~~~~~~---~~ 325 (581)
...+..++..+|++++|+|+.+|...++.+++..+...++| +|+++||+|+.+. ++..+.+. +....+... ..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~i~~~i~~~l~~~g~~~~ 235 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD--EELLELVELEVRELLSSYEFPGD 235 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCH--HHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999999999999999999999999999999 7889999999742 22111111 111112221 13
Q ss_pred cceEEEEeccCCCCh------------------hhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEec
Q 008003 326 KVQVVEVSAVKKTGL------------------DDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKA 387 (581)
Q Consensus 326 ~~~ii~iSAktg~gI------------------~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~ 387 (581)
.++++++||.+|.++ ..|++.|.... ..+..+.+.|+..+|.++|..++.|++++|.|.+
T Consensus 236 ~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~--~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~s 313 (478)
T PLN03126 236 DIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYI--PIPQRQTDLPFLLAVEDVFSITGRGTVATGRVER 313 (478)
T ss_pred cceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhC--CCCCCccccceeeEEEEEEEeCCceEEEEEEEEc
Confidence 679999999998533 34555444321 1122345678999999999999999999999999
Q ss_pred cEEeeCcEEEEccc----cceEEEEEcccCCcccccCCCCcEEEeccCCCC----CCCCeEEEeC
Q 008003 388 GTLVCGQHVVVGHE----WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP----MAGDDIIVVD 444 (581)
Q Consensus 388 GtLk~gd~i~~g~~----~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~----~~Gd~~~~v~ 444 (581)
|.+++||.|.+++. ..+|++|.. ++..+++|.||+++.+ .+.++. ..|++++...
T Consensus 314 G~i~~Gd~v~i~p~~~~~~~~VksI~~-~~~~v~~A~aG~~v~l-~L~~i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 314 GTVKVGETVDIVGLRETRSTTVTGVEM-FQKILDEALAGDNVGL-LLRGIQKADIQRGMVLAKPG 376 (478)
T ss_pred CeEecCCEEEEecCCCceEEEEEEEEE-CCeECCEEeCCceeee-eccCCcHHHcCCccEEecCC
Confidence 99999999999653 468999985 5789999999999987 333321 4788887654
No 30
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=1.1e-27 Score=257.08 Aligned_cols=252 Identities=27% Similarity=0.354 Sum_probs=188.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc----------------cccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT----------------SLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~----------------~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~ 250 (581)
++..+|+++||+|+|||||+++|.+. .......+|+|.+.....+.. ++..++|||||||++|
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY 88 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHHH
Confidence 45588999999999999999999732 011223579999988777765 6788999999999999
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEE-EEEeCCCCCCCCh--hhHHhhhhhccchhhhcC---
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV-VAINKCDKPAADP--ERVKNQLGAEGLELEDWG--- 324 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piI-vViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~--- 324 (581)
...+..++..+|++++|+|+.+|...++.+++..+...++|.+ +++||+|+.+... +....++... +...+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~---l~~~~~~~ 165 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL---LSEYDFPG 165 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHH---HHhcCCCc
Confidence 9988889999999999999999999999999999988899955 6899999964221 1111122211 11121
Q ss_pred CcceEEEEeccCCC-ChhhHHHHHHHHHH----H-hhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEE
Q 008003 325 GKVQVVEVSAVKKT-GLDDLEVALLLQAE----M-MNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVV 398 (581)
Q Consensus 325 ~~~~ii~iSAktg~-gI~eLl~~L~~~~~----~-~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~ 398 (581)
..++++++||++|. |..++.+.+..+.+ . +.+..+.+.|+..+|.+++..++.|++++|+|.+|++++||.|.+
T Consensus 166 ~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i 245 (394)
T TIGR00485 166 DDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEI 245 (394)
T ss_pred cCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEE
Confidence 23789999999985 44433332222111 1 122334567899999999999999999999999999999999988
Q ss_pred cc----ccceEEEEEcccCCcccccCCCCcEEE--eccCCC-CCCCCeEEEe
Q 008003 399 GH----EWGRIRAIRDMVGKSTDKARPAMPVEI--EGLKGL-PMAGDDIIVV 443 (581)
Q Consensus 399 g~----~~~kVk~i~~~~g~~v~~a~~~~~v~i--~gl~~~-~~~Gd~~~~v 443 (581)
.+ ...+|++|.. +++.+++|.+|+++.+ .++... -..|++++..
T Consensus 246 ~p~~~~~~~~VksI~~-~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~ 296 (394)
T TIGR00485 246 VGLKDTRKTTVTGVEM-FRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKP 296 (394)
T ss_pred ecCCCCcEEEEEEEEE-CCeEEEEECCCCEEEEEeCCccHHHCCccEEEecC
Confidence 53 3568999975 6788999999999966 444321 1478888764
No 31
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.96 E-value=3.3e-27 Score=264.20 Aligned_cols=298 Identities=25% Similarity=0.294 Sum_probs=221.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc---------------cccccCceeEeeeeEEEeec----CCeEEEEEeCCCcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL---------------VAKEAGGITQHMGAFVVGMS----TGASITFLDTPGHA 248 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~---------------~~~~~~g~T~d~~~~~~~~~----~g~~i~liDTpG~~ 248 (581)
+..+|+|+||++||||||+++|+...- ......|+|.......+.+. .++.++|||||||.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 456999999999999999999975311 11224577777655555442 35789999999999
Q ss_pred hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcce
Q 008003 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQ 328 (581)
Q Consensus 249 ~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ 328 (581)
+|...+.++++.+|++|+|+|++++...++...+..+...++|+|+|+||+|+...+.+.....+... +.. ....
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~-lg~----~~~~ 160 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDV-IGI----DASD 160 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHH-hCC----Ccce
Confidence 99999999999999999999999999999998888877789999999999999765444333333221 000 1125
Q ss_pred EEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc--cceEE
Q 008003 329 VVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIR 406 (581)
Q Consensus 329 ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~kVk 406 (581)
++++||++|.|+++|+++|.... +.+..+++.|+.++|++++.+++.|.+++++|.+|+|+.||.|.+.+. ..+|.
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~l--p~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~ 238 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERI--PPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVD 238 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhC--ccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEE
Confidence 89999999999999999998643 344456778999999999999999999999999999999999988543 34566
Q ss_pred EEE--cccCCcccccCCCCcEEEe-ccCCC--CCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCC
Q 008003 407 AIR--DMVGKSTDKARPAMPVEIE-GLKGL--PMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSED 481 (581)
Q Consensus 407 ~i~--~~~g~~v~~a~~~~~v~i~-gl~~~--~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (581)
.+. ..+...++++.+|+.+.+. |+++. -..||+++...+.. .. .+. ..
T Consensus 239 ~i~~~~~~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~--~~-----------------------~l~--~~ 291 (600)
T PRK05433 239 EVGVFTPKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPA--EE-----------------------PLP--GF 291 (600)
T ss_pred EeeccCCCceECcEEcCCCEEEEecccccccccCCCCEEECCCCcc--cc-----------------------CCC--CC
Confidence 653 2356678999999977664 54332 15899997654321 00 000 00
Q ss_pred CCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeE
Q 008003 482 VPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV 519 (581)
Q Consensus 482 ~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i 519 (581)
..-.+.+..-+.+...+..+.|.++|.++.-+...+.+
T Consensus 292 ~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~ 329 (600)
T PRK05433 292 KEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTY 329 (600)
T ss_pred CCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEE
Confidence 01234455557778888899999999999877666554
No 32
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.95 E-value=9.7e-27 Score=250.39 Aligned_cols=250 Identities=24% Similarity=0.235 Sum_probs=185.1
Q ss_pred CEEEEEccCCCCcchHhhhhhcccc---------------------------------cccccCceeEeeeeEEEeecCC
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSL---------------------------------VAKEAGGITQHMGAFVVGMSTG 236 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~---------------------------------~~~~~~g~T~d~~~~~~~~~~g 236 (581)
.+|+++||+|+|||||+++|+...- ......|+|.+.....+.+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 4799999999999999999953210 0112358889998888887 78
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhhHHhhhhh
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQLGA 315 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~~~~~l~~ 315 (581)
..+.|+|||||++|...+..++..+|++++|+|+..|..+++.+++..+...++| +|+++||+|+...+.+.+.....+
T Consensus 80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~ 159 (406)
T TIGR02034 80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKD 159 (406)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHH
Confidence 8999999999999998888899999999999999999999999999888877775 889999999976543332222222
Q ss_pred ccchhhhcC-CcceEEEEeccCCCChhh------------HHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEE
Q 008003 316 EGLELEDWG-GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTT 382 (581)
Q Consensus 316 ~~~~~~~~~-~~~~ii~iSAktg~gI~e------------Ll~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~ 382 (581)
....+..++ ..++++++||++|+|+++ |++.|.. +..+....+.|+..+|.+++.....+.-+.
T Consensus 160 ~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~---~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~ 236 (406)
T TIGR02034 160 YLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET---VEVERDAQDLPLRFPVQYVNRPNLDFRGYA 236 (406)
T ss_pred HHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh---cCCCCCcCCCCcccceEEEeecCCCcEEEE
Confidence 211112222 246899999999999986 4444433 222223456678887877764433233367
Q ss_pred EEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEEeccCCC--CCCCCeEEEeCC
Q 008003 383 AIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGL--PMAGDDIIVVDS 445 (581)
Q Consensus 383 ~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~--~~~Gd~~~~v~~ 445 (581)
|.|.+|+|++||.|.+.+ ...+|++|.. ++..+++|.||+++.+.. .+. -..|++++...+
T Consensus 237 G~v~~G~l~~gd~v~i~P~~~~~~VksI~~-~~~~~~~a~~G~~v~l~l-~~~~~i~rG~vl~~~~~ 301 (406)
T TIGR02034 237 GTIASGSVHVGDEVVVLPSGRSSRVARIVT-FDGDLEQARAGQAVTLTL-DDEIDISRGDLLAAADS 301 (406)
T ss_pred EEEecceeecCCEEEEeCCCcEEEEEEEEE-CCcccCEeCCCCEEEEEE-CCccccCCccEEEcCCC
Confidence 999999999999999854 4578999975 567899999999998853 331 146888887654
No 33
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.95 E-value=5.5e-27 Score=253.75 Aligned_cols=251 Identities=21% Similarity=0.271 Sum_probs=190.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc---ccccccCceeEeeeeEEEe---------------ecC--------------
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVG---------------MST-------------- 235 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~---~~~~~~~g~T~d~~~~~~~---------------~~~-------------- 235 (581)
...+|+++||++||||||+.+|.+.. ...+...|+|.+.+..... ++.
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 34789999999999999999998743 3445567888877665431 111
Q ss_pred ---CeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCC-CChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCCh-hhH
Q 008003 236 ---GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-VMPQTLEAIAHANAANVP-IVVAINKCDKPAADP-ERV 309 (581)
Q Consensus 236 ---g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g-~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~-~~~ 309 (581)
...+.|+|||||++|...+..++..+|++++|+|++++ ..+|+.+++..+...+++ +|+|+||+|+.+... ...
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~ 192 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQ 192 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHH
Confidence 24789999999999999999999999999999999986 789999999888777775 899999999974211 111
Q ss_pred HhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecC--------CCcEE
Q 008003 310 KNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKG--------RGPLT 381 (581)
Q Consensus 310 ~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~--------~G~v~ 381 (581)
...+.+... .......+++++||++|+|++.|++.|.... +.+..+.+.|+..+|.++|...+ .|+++
T Consensus 193 ~~ei~~~l~--~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l--p~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv 268 (460)
T PTZ00327 193 YEEIRNFVK--GTIADNAPIIPISAQLKYNIDVVLEYICTQI--PIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVA 268 (460)
T ss_pred HHHHHHHHH--hhccCCCeEEEeeCCCCCCHHHHHHHHHhhC--CCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEE
Confidence 222222110 0122457999999999999999999998632 23334456788888888876543 79999
Q ss_pred EEEEeccEEeeCcEEEEccc---------------cceEEEEEcccCCcccccCCCCcEEEeccC---CCC----CCCCe
Q 008003 382 TAIVKAGTLVCGQHVVVGHE---------------WGRIRAIRDMVGKSTDKARPAMPVEIEGLK---GLP----MAGDD 439 (581)
Q Consensus 382 ~~~V~~GtLk~gd~i~~g~~---------------~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~---~~~----~~Gd~ 439 (581)
+|.|.+|++++||.|.+++. ..+|++|.. ++..+++|.||+++.|. +. ++. ..|++
T Consensus 269 ~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~-~~~~v~~a~aG~~vai~-l~ld~~v~~~dv~rG~V 346 (460)
T PTZ00327 269 GGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFA-ENNELQYAVPGGLIGVG-TTIDPTLTRADRLVGQV 346 (460)
T ss_pred EEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEE-CCeECCEEcCCCEEEEE-eccCCCcchhhcccccE
Confidence 99999999999999999763 358999984 78999999999998884 22 221 36788
Q ss_pred EEEeC
Q 008003 440 IIVVD 444 (581)
Q Consensus 440 ~~~v~ 444 (581)
++...
T Consensus 347 l~~~~ 351 (460)
T PTZ00327 347 LGYPG 351 (460)
T ss_pred EEcCC
Confidence 77643
No 34
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.6e-27 Score=249.38 Aligned_cols=249 Identities=27% Similarity=0.326 Sum_probs=202.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc---------------cccccccCceeEeeeeEEEeecC--CeEEEEEeCCCcch
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT---------------SLVAKEAGGITQHMGAFVVGMST--GASITFLDTPGHAA 249 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~---------------~~~~~~~~g~T~d~~~~~~~~~~--g~~i~liDTpG~~~ 249 (581)
.+-.+++|+-|.+||||||.++|+.. +..+....|||.......+.+.+ ++.++++|||||-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 35678999999999999999999541 22344678999988777777632 38999999999999
Q ss_pred hhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceE
Q 008003 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQV 329 (581)
Q Consensus 250 ~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~i 329 (581)
|.....+.+..||++|||+|+++|++.||...+..+.+.+..+|.|+||+|++.++++++..++.+.-.. ...++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~-----~~~~~ 212 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDI-----PPAEV 212 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC-----Cccce
Confidence 9999999999999999999999999999999999999999999999999999999999988777654211 12379
Q ss_pred EEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc---c-ceE
Q 008003 330 VEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE---W-GRI 405 (581)
Q Consensus 330 i~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~---~-~kV 405 (581)
+.+|||+|.|+++++++|.+. +++++...+.|+.+.+++++.+..+|.++.++|.+|.+++||.|.+... + .++
T Consensus 213 i~vSAK~G~~v~~lL~AII~r--VPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~ 290 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRR--VPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKV 290 (650)
T ss_pred EEEEeccCccHHHHHHHHHhh--CCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEE
Confidence 999999999999999999874 5777888999999999999999999999999999999999999987432 1 233
Q ss_pred EEEEcccCCcccccCCCCcEEEe-ccCCC--CCCCCeEEE
Q 008003 406 RAIRDMVGKSTDKARPAMPVEIE-GLKGL--PMAGDDIIV 442 (581)
Q Consensus 406 k~i~~~~g~~v~~a~~~~~v~i~-gl~~~--~~~Gd~~~~ 442 (581)
-.+...+..++.+..+|+...|. +..++ +..||+++.
T Consensus 291 vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~ 330 (650)
T KOG0462|consen 291 VGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAH 330 (650)
T ss_pred eEEeccCceeeeeecccccceeEecccccccccccceeee
Confidence 34445666667777777766554 22222 356776653
No 35
>COG1159 Era GTPase [General function prediction only]
Probab=99.95 E-value=1.6e-27 Score=237.87 Aligned_cols=247 Identities=21% Similarity=0.229 Sum_probs=189.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc-ch-------hhHHHhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH-AA-------FSAMRKRG 257 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~-~~-------~~~~~~~~ 257 (581)
.+...|+|+|+||+|||||+|+|.+.+. +++..+.|||+.....+.. +..++.|+||||. +. ........
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 4567899999999999999999999986 5788899999998888876 7899999999993 21 22334467
Q ss_pred cccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 258 AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 258 ~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
+..+|+++||+|+++++.+.+...+..++..+.|+|+++||+|....... ........ ........++|+||++|
T Consensus 83 l~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~-l~~~~~~~----~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV-LLKLIAFL----KKLLPFKEIVPISALKG 157 (298)
T ss_pred hccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHH-HHHHHHHH----HhhCCcceEEEeecccc
Confidence 89999999999999988888888888888777899999999998754321 11111111 11223347999999999
Q ss_pred CChhhHHHHHHHHHH----------------------Hhhc-----ccccCCCcceEEEEEEeecCCCcEEEEEEeccEE
Q 008003 338 TGLDDLEVALLLQAE----------------------MMNL-----KARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTL 390 (581)
Q Consensus 338 ~gI~eLl~~L~~~~~----------------------~~~~-----~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtL 390 (581)
.|++.|.+.+..... +.+. ..++-++...+.++.+... ..|.+
T Consensus 158 ~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~----------~~~~~ 227 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEER----------EKGLL 227 (298)
T ss_pred CCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEec----------CCCeE
Confidence 999999999875322 1111 1123344444445544442 25778
Q ss_pred eeCcEEEEccccceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHH
Q 008003 391 VCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERAR 450 (581)
Q Consensus 391 k~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~ 450 (581)
+....|++.....| ..++|++|+.+++++..++.+|+.+.+.+++.++|++|.+.|+-+
T Consensus 228 ~I~a~I~Ver~sQK-~IiIGk~G~~iK~IG~~AR~~ie~l~~~kV~L~L~VKVk~~W~~~ 286 (298)
T COG1159 228 KIHATIYVERESQK-GIIIGKNGAMIKKIGTAARKDIEKLLGCKVYLELWVKVKKNWRDD 286 (298)
T ss_pred EEEEEEEEecCCcc-ceEECCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEEccccccC
Confidence 88888888666555 678999999999999999999999999999999999999999744
No 36
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.95 E-value=2.1e-26 Score=238.33 Aligned_cols=248 Identities=31% Similarity=0.399 Sum_probs=206.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccccc----------------ccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV----------------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~----------------~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~ 251 (581)
.-.+|+|+-|++||||||++.|+.+.-. .....|+|.=.....+.+ +++.++++|||||.+|.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCcc
Confidence 4568999999999999999999764321 112468888777777777 89999999999999999
Q ss_pred HHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc----cchhhhcCCcc
Q 008003 252 AMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE----GLELEDWGGKV 327 (581)
Q Consensus 252 ~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~----~~~~~~~~~~~ 327 (581)
...++.++..|.+++++|+.+|.++|++..++.+...+.+.|||+||+|.+++.++.+..+...+ +...++ -++
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQ--LdF 160 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQ--LDF 160 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhh--CCC
Confidence 99999999999999999999999999999999999999999999999999998887776655433 322222 367
Q ss_pred eEEEEeccCCC----------ChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEE
Q 008003 328 QVVEVSAVKKT----------GLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVV 397 (581)
Q Consensus 328 ~ii~iSAktg~----------gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~ 397 (581)
|+++.||+.|. ++..||++|... .+.+..+.+.|+...|.........|.+..|+|.+|++++|+.+.
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~h--vp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~ 238 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDH--VPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVA 238 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHh--CCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEE
Confidence 99999999884 577899999874 455667889999999988888889999999999999999999998
Q ss_pred Ecc-----ccceEEEEEcccC---CcccccCCCCcEEEeccCCCCCCCCeEE
Q 008003 398 VGH-----EWGRIRAIRDMVG---KSTDKARPAMPVEIEGLKGLPMAGDDII 441 (581)
Q Consensus 398 ~g~-----~~~kVk~i~~~~g---~~v~~a~~~~~v~i~gl~~~~~~Gd~~~ 441 (581)
+-. ..+||..+++..| ..+.+|.+|+.|.|.|+.++ ..||++|
T Consensus 239 ~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~-~igdTi~ 289 (603)
T COG1217 239 LIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI-NIGDTIC 289 (603)
T ss_pred EEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccc-ccccccc
Confidence 732 3578877776655 56889999999999999876 4566665
No 37
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.94 E-value=3.6e-26 Score=246.08 Aligned_cols=251 Identities=25% Similarity=0.319 Sum_probs=185.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc---cccccCceeEeeeeEEEe--------------e----c-------CCeEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL---VAKEAGGITQHMGAFVVG--------------M----S-------TGASI 239 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~---~~~~~~g~T~d~~~~~~~--------------~----~-------~g~~i 239 (581)
...+|+++||+|+|||||+++|.+... ......|+|.+.....+. . + .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 457899999999999999999976422 223345677766533221 0 0 14689
Q ss_pred EEEeCCCcchhhHHHhhccccccEEEEEEeccCCC-ChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCChh-hHHhhhhhc
Q 008003 240 TFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEAIAHANAANV-PIVVAINKCDKPAADPE-RVKNQLGAE 316 (581)
Q Consensus 240 ~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~~~-~~~~~l~~~ 316 (581)
+|||||||++|...+..++..+|++++|+|++++. ..++.+++..+...++ |+++|+||+|+.+.... .....+...
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~ 162 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF 162 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999987 7888898888777765 58999999999743211 111222111
Q ss_pred cchhhhcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecC--------CCcEEEEEEecc
Q 008003 317 GLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKG--------RGPLTTAIVKAG 388 (581)
Q Consensus 317 ~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~--------~G~v~~~~V~~G 388 (581)
.. ..+...++++++||++|+|+++|+++|.... +.+..+.+.|+..+|.+++...+ +|++++|.|.+|
T Consensus 163 l~--~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l--~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G 238 (406)
T TIGR03680 163 VK--GTVAENAPIIPVSALHNANIDALLEAIEKFI--PTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG 238 (406)
T ss_pred hh--hcccCCCeEEEEECCCCCChHHHHHHHHHhC--CCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeC
Confidence 10 0112346899999999999999999998643 22334457788999999886554 577999999999
Q ss_pred EEeeCcEEEEccc--------------cceEEEEEcccCCcccccCCCCcEEEeccC---CCC----CCCCeEEEeC
Q 008003 389 TLVCGQHVVVGHE--------------WGRIRAIRDMVGKSTDKARPAMPVEIEGLK---GLP----MAGDDIIVVD 444 (581)
Q Consensus 389 tLk~gd~i~~g~~--------------~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~---~~~----~~Gd~~~~v~ 444 (581)
++++||.|.+++. ..+|++|.. ++.++.+|.||+++.|. ++ ++. ..|+.++...
T Consensus 239 ~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~-~~~~~~~a~~G~~v~i~-l~~~~~i~~~dv~~G~vl~~~~ 313 (406)
T TIGR03680 239 KLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRA-GGYKVEEARPGGLVGVG-TKLDPALTKADALAGQVVGKPG 313 (406)
T ss_pred EEeCCCEEEEccCccccccccccccccceEEeEEEE-CCEECCEEcCCCEEEEe-eccCCCCCHHHcccccEEEcCC
Confidence 9999999999754 247999985 68899999999999873 31 221 3577777654
No 38
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.94 E-value=5.9e-26 Score=248.18 Aligned_cols=256 Identities=20% Similarity=0.182 Sum_probs=185.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc-c--------------------------------ccccCceeEeeeeEEEee
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL-V--------------------------------AKEAGGITQHMGAFVVGM 233 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~-~--------------------------------~~~~~g~T~d~~~~~~~~ 233 (581)
+..++|+++||+|+|||||+++|+...- + .....|+|.+.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4568999999999999999999964310 0 011357888888777776
Q ss_pred cCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCChhhHHhh
Q 008003 234 STGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANV-PIVVAINKCDKPAADPERVKNQ 312 (581)
Q Consensus 234 ~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~~~~~~~~ 312 (581)
++..++|+|||||++|...+..++..+|++++|+|+..|...++.+++..+...++ |+|+++||+|+.+.+.+.+...
T Consensus 105 -~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i 183 (474)
T PRK05124 105 -EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERI 183 (474)
T ss_pred -CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHH
Confidence 78899999999999999888888999999999999999999999988887777665 5899999999975443322222
Q ss_pred hhhccchhhhc--CCcceEEEEeccCCCChhhHHH--------HHHHHHHHh-hcccccCCCcceEEEEEEeecCCCcEE
Q 008003 313 LGAEGLELEDW--GGKVQVVEVSAVKKTGLDDLEV--------ALLLQAEMM-NLKARVDGPAQAYVVEARLDKGRGPLT 381 (581)
Q Consensus 313 l~~~~~~~~~~--~~~~~ii~iSAktg~gI~eLl~--------~L~~~~~~~-~~~~~~~~~~~~~V~e~~~~~~~G~v~ 381 (581)
..+....+..+ ....+++++||++|+|++++.+ .|....+.. .+....+.|+..+|.+++........+
T Consensus 184 ~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~ 263 (474)
T PRK05124 184 REDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGY 263 (474)
T ss_pred HHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccce
Confidence 22211111111 1257899999999999987532 133322222 222345667888887775433221225
Q ss_pred EEEEeccEEeeCcEEEEccc--cceEEEEEcccCCcccccCCCCcEEEeccCCC--CCCCCeEEEeCC
Q 008003 382 TAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGL--PMAGDDIIVVDS 445 (581)
Q Consensus 382 ~~~V~~GtLk~gd~i~~g~~--~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~--~~~Gd~~~~v~~ 445 (581)
.|+|.+|+|++||.|++++. ..+|++|.. ++..+..|.||+++.+.. .+. -..|++++...+
T Consensus 264 ~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~-~~~~v~~A~aG~~V~l~L-~~~~~i~rG~VL~~~~~ 329 (474)
T PRK05124 264 AGTLASGVVKVGDRVKVLPSGKESNVARIVT-FDGDLEEAFAGEAITLVL-EDEIDISRGDLLVAADE 329 (474)
T ss_pred EEEEEeEEEecCCEEEEecCCceEEEEEEEE-cCccccCcCCCCEEEEEe-CCccccCCccEEECCCC
Confidence 79999999999999999754 568999985 567899999999998843 331 147998886544
No 39
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=5.1e-26 Score=236.18 Aligned_cols=250 Identities=29% Similarity=0.377 Sum_probs=201.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc---------------cccccccCceeEeeeeEEEeec----CCeEEEEEeCCCc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT---------------SLVAKEAGGITQHMGAFVVGMS----TGASITFLDTPGH 247 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~---------------~~~~~~~~g~T~d~~~~~~~~~----~g~~i~liDTpG~ 247 (581)
.+-.+.+|+-|.+||||||.++|... .......+|+|.......+.+. +.+.++|+|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 45578999999999999999999542 1233456899998877777654 3488999999999
Q ss_pred chhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cchhhhcCCc
Q 008003 248 AAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GLELEDWGGK 326 (581)
Q Consensus 248 ~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~~~~~~~~~ 326 (581)
-+|.-...+.+..|.+++||+|++.|+..||....-.+...+.-+|-|+||+||+.++++++..++.+. ++. .
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid------~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGID------A 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCC------c
Confidence 999999999999999999999999999999999888888889999999999999999999988877643 222 2
Q ss_pred ceEEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcccc--ce
Q 008003 327 VQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW--GR 404 (581)
Q Consensus 327 ~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~--~k 404 (581)
...+.+|||+|.||++++++|.. .++.++.+++.|+.+.+++++.+..+|.++.++|..|++++||.|.+-... -.
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~--~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~ 238 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVE--KIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYE 238 (603)
T ss_pred chheeEecccCCCHHHHHHHHHh--hCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEE
Confidence 35799999999999999999987 457778889999999999999999999999999999999999999883321 12
Q ss_pred EEE--EEcccCCcccccCCCCcEEE-eccCCCC--CCCCeEEEeC
Q 008003 405 IRA--IRDMVGKSTDKARPAMPVEI-EGLKGLP--MAGDDIIVVD 444 (581)
Q Consensus 405 Vk~--i~~~~g~~v~~a~~~~~v~i-~gl~~~~--~~Gd~~~~v~ 444 (581)
|.. +............+|+..-+ .|++++. ..||++..+.
T Consensus 239 V~evGvftP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~ 283 (603)
T COG0481 239 VDEVGIFTPKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLAS 283 (603)
T ss_pred EEEEeeccCCccccccccCCceeEEEEeeeecccCcccceEeccC
Confidence 222 23445555667778887743 3555432 4678777444
No 40
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.94 E-value=1.3e-24 Score=239.77 Aligned_cols=341 Identities=19% Similarity=0.195 Sum_probs=242.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc----------------c------ccccCceeEeeeeEEEeecCCeEEEEEeC
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL----------------V------AKEAGGITQHMGAFVVGMSTGASITFLDT 244 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~----------------~------~~~~~g~T~d~~~~~~~~~~g~~i~liDT 244 (581)
.+..+|+|+||+|+|||||+++|+...- . .....|+|.......+.+ +++.++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 4567999999999999999999963110 0 011235666666666777 7899999999
Q ss_pred CCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cc-----
Q 008003 245 PGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL----- 318 (581)
Q Consensus 245 pG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~----- 318 (581)
|||.+|.....++++.+|++|+|+|++++...++...+..+...++|+++++||+|+...+..+....+... +.
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 999999998888999999999999999999999989998888889999999999999765543322222110 00
Q ss_pred --------------------------------------------hhhh------------------------------cC
Q 008003 319 --------------------------------------------ELED------------------------------WG 324 (581)
Q Consensus 319 --------------------------------------------~~~~------------------------------~~ 324 (581)
.++. .+
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~ 246 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAG 246 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcC
Confidence 0000 01
Q ss_pred CcceEEEEeccCCCChhhHHHHHHHHHHHhhccc-------ccCCCcceEEEEEE---eecCCCcEEEEEEeccEEeeCc
Q 008003 325 GKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-------RVDGPAQAYVVEAR---LDKGRGPLTTAIVKAGTLVCGQ 394 (581)
Q Consensus 325 ~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~-------~~~~~~~~~V~e~~---~~~~~G~v~~~~V~~GtLk~gd 394 (581)
.-+|+++.||.++.|+..|++.|...+..+.... ..+.++.++|+.+. .++.+|.++.++|.+|+++.|+
T Consensus 247 ~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~ 326 (526)
T PRK00741 247 ELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGM 326 (526)
T ss_pred CeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEECCCC
Confidence 1268999999999999999999998664432111 12345889999887 3457899999999999999999
Q ss_pred EEEEcccc-----ceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 008003 395 HVVVGHEW-----GRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKIN 469 (581)
Q Consensus 395 ~i~~g~~~-----~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~ 469 (581)
.|...... +++..+.+.+...+++|.||+.+.+.++... ..||+++.-+. +
T Consensus 327 ~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~-~~GDTL~~~~~------~----------------- 382 (526)
T PRK00741 327 KVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI-QIGDTFTQGEK------L----------------- 382 (526)
T ss_pred EEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCC-ccCCCccCCCc------c-----------------
Confidence 99875432 3445677778889999999999999999887 79999974220 0
Q ss_pred hhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeEEEeccCccchhhhhhhhccCCEEEEecCCC
Q 008003 470 EERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKS 549 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i~~~~vG~it~~Dv~~A~~~~~~I~~Fnv~~ 549 (581)
.++ .+....+.+..-|.+...+--+.+..+|.+|..+. .+.+....- ++..|+++-=..
T Consensus 383 -----~~~--~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED-~l~~~~~~~-------------t~e~il~g~G~l 441 (526)
T PRK00741 383 -----KFT--GIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEG-AVQVFRPLD-------------NNDLILGAVGQL 441 (526)
T ss_pred -----ccC--CCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcC-CeEEEECCC-------------CCCEEEEEEeHH
Confidence 000 11123567788899999999999999999998776 355443221 234444332112
Q ss_pred ChhHH-HHHHHHcCceEEEeeeecc
Q 008003 550 PPTSV-SQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 550 ~~~~~-~~~a~~~~v~i~~~~ii~~ 573 (581)
.-+++ ..+..+.||++..-..=||
T Consensus 442 hleV~~~RL~~ey~v~v~~~~~~v~ 466 (526)
T PRK00741 442 QFEVVAHRLKNEYNVEAIYEPVGVA 466 (526)
T ss_pred HHHHHHHHHHHHhCCEEEEecCCcc
Confidence 22222 4566667777765544333
No 41
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.94 E-value=4.8e-25 Score=252.06 Aligned_cols=302 Identities=26% Similarity=0.251 Sum_probs=229.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc------------------cccccCceeEeeeeEEEeecCCeEEEEEeCCCcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL------------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~------------------~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~ 248 (581)
.+-++|+|+||+|+|||||+|+|....- .....+|+|.+.....+.+ ++..++|||||||.
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~ 86 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHV 86 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCc
Confidence 3457999999999999999999964210 0112468999999999988 88999999999999
Q ss_pred hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cc---------
Q 008003 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL--------- 318 (581)
Q Consensus 249 ~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~--------- 318 (581)
+|...+..+++.+|++++|+|+.++...++...+..+...++|+++++||+|+...+.......+... +.
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipi 166 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPI 166 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEecc
Confidence 99988889999999999999999999999999999888889999999999999865533322222110 00
Q ss_pred ---------------------------------------------------------------------hhhh-------
Q 008003 319 ---------------------------------------------------------------------ELED------- 322 (581)
Q Consensus 319 ---------------------------------------------------------------------~~~~------- 322 (581)
....
T Consensus 167 s~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~ 246 (689)
T TIGR00484 167 GAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRK 246 (689)
T ss_pred ccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 0000
Q ss_pred ---cCCcceEEEEeccCCCChhhHHHHHHHHHHHhhc-----------------ccccCCCcceEEEEEEeecCCCcEEE
Q 008003 323 ---WGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL-----------------KARVDGPAQAYVVEARLDKGRGPLTT 382 (581)
Q Consensus 323 ---~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~-----------------~~~~~~~~~~~V~e~~~~~~~G~v~~ 382 (581)
.+..+|++..||+++.|++.|++.|......+.. ..+++.++.++|+.+..++..|.++.
T Consensus 247 ~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~ 326 (689)
T TIGR00484 247 GVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQLTF 326 (689)
T ss_pred HHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeEEE
Confidence 1123567888999999999999999875433211 11346678899999999999999999
Q ss_pred EEEeccEEeeCcEEEEccc-----cceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHH
Q 008003 383 AIVKAGTLVCGQHVVVGHE-----WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRK 457 (581)
Q Consensus 383 ~~V~~GtLk~gd~i~~g~~-----~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~ 457 (581)
++|.+|+|+.||.|..... .+++..+.+....++.++.+|+.+.|.|+.+. ..||+++...+..
T Consensus 327 ~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~~---------- 395 (689)
T TIGR00484 327 VRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT-TTGDTLCDPKIDV---------- 395 (689)
T ss_pred EEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCC-CCCCEEeCCCCcc----------
Confidence 9999999999999986432 23555666767778999999999999999887 7899997432100
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeE
Q 008003 458 KKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV 519 (581)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i 519 (581)
.+. .+....+.+.+.|.+...+-.+.|.++|+++..+...+++
T Consensus 396 -----------------~~~--~~~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v 438 (689)
T TIGR00484 396 -----------------ILE--RMEFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRT 438 (689)
T ss_pred -----------------ccC--CCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEE
Confidence 000 0111246778889999999999999999988876544443
No 42
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.94 E-value=2e-25 Score=240.27 Aligned_cols=253 Identities=26% Similarity=0.334 Sum_probs=185.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc---ccccccCceeEeeeeEEEee--------------c----C-------CeE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVGM--------------S----T-------GAS 238 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~---~~~~~~~g~T~d~~~~~~~~--------------~----~-------g~~ 238 (581)
....+|+++||.++|||||+.+|.+.. .......|+|.+.......+ . . ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 445799999999999999999997632 22333567887765422211 0 0 268
Q ss_pred EEEEeCCCcchhhHHHhhccccccEEEEEEeccCCC-ChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCChh-hHHhhhhh
Q 008003 239 ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEAIAHANAANV-PIVVAINKCDKPAADPE-RVKNQLGA 315 (581)
Q Consensus 239 i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~~~-~~~~~l~~ 315 (581)
++|||||||++|...+..++..+|++++|+|++++. ..++.+++..+...+. |+++|+||+|+.+.+.. .....+..
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~ 166 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKE 166 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHH
Confidence 999999999999998888889999999999999887 7888888887776665 59999999999753221 11111111
Q ss_pred ccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecC--------CCcEEEEEEec
Q 008003 316 EGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKG--------RGPLTTAIVKA 387 (581)
Q Consensus 316 ~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~--------~G~v~~~~V~~ 387 (581)
... .......+++++||++|.|+++|+++|.... ..+..+.+.|+..+|.++|...+ +|++++|+|.+
T Consensus 167 ~l~--~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l--~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~ 242 (411)
T PRK04000 167 FVK--GTVAENAPIIPVSALHKVNIDALIEAIEEEI--PTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQ 242 (411)
T ss_pred Hhc--cccCCCCeEEEEECCCCcCHHHHHHHHHHhC--CCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEe
Confidence 100 0012346899999999999999999997643 23334457788999999886544 56799999999
Q ss_pred cEEeeCcEEEEccc--------------cceEEEEEcccCCcccccCCCCcEEEeccC---CCC----CCCCeEEEeCC
Q 008003 388 GTLVCGQHVVVGHE--------------WGRIRAIRDMVGKSTDKARPAMPVEIEGLK---GLP----MAGDDIIVVDS 445 (581)
Q Consensus 388 GtLk~gd~i~~g~~--------------~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~---~~~----~~Gd~~~~v~~ 445 (581)
|++++||.|.+.+. ..+|++|.. ++..+++|.||+++.|. +. ++. ..|+.++...+
T Consensus 243 G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~-~~~~~~~a~~G~~v~i~-l~~~~~i~~~~i~~G~vl~~~~~ 319 (411)
T PRK04000 243 GVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRA-GGEKVEEARPGGLVGVG-TKLDPSLTKADALAGSVAGKPGT 319 (411)
T ss_pred CEEecCCEEEEcCCcceecccccccccceEEEeEEEE-CCEECCEEcCCCEEEEE-eccCCCCCHHHccCccEEEcCCC
Confidence 99999999999764 257999974 67889999999999874 32 211 35777775543
No 43
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.94 E-value=1.8e-25 Score=253.40 Aligned_cols=253 Identities=22% Similarity=0.200 Sum_probs=182.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cc--------------------------------cccCceeEeeeeEEEeec
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VA--------------------------------KEAGGITQHMGAFVVGMS 234 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~--------------------------------~~~~g~T~d~~~~~~~~~ 234 (581)
..++|+|+||+|+|||||+|+|+...- +. ....|+|.+.....+.+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~- 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT- 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc-
Confidence 346899999999999999999975321 11 11257777877777776
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCChhhHHhhh
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANV-PIVVAINKCDKPAADPERVKNQL 313 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~~~~~~~~l 313 (581)
++..++|+|||||++|...+..++..+|++++|+|+..|..+++.+++..+...++ |+|+++||+|+.+.+.+.+....
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~ 181 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIV 181 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHH
Confidence 78899999999999999888889999999999999999999999998888877775 58899999999754433322222
Q ss_pred hhccchhhhcC-CcceEEEEeccCCCChhh------------HHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcE
Q 008003 314 GAEGLELEDWG-GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPL 380 (581)
Q Consensus 314 ~~~~~~~~~~~-~~~~ii~iSAktg~gI~e------------Ll~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v 380 (581)
.+....+..++ .+.+++++||++|.|+++ |++.|... ..+....+.|+..+|.+++.....+..
T Consensus 182 ~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~---~~~~~~~~~p~r~~i~~v~~~~~~~~g 258 (632)
T PRK05506 182 ADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV---EIASDRNLKDFRFPVQYVNRPNLDFRG 258 (632)
T ss_pred HHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhcC---CCCCCcCCCCceeeEEEEEecCCCceE
Confidence 22211111222 346799999999999984 44444321 112223467788888777653222222
Q ss_pred EEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEEeccCCCC-CCCCeEEEeCC
Q 008003 381 TTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP-MAGDDIIVVDS 445 (581)
Q Consensus 381 ~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~-~~Gd~~~~v~~ 445 (581)
+.|.|.+|++++||.|.+++ ...+|++|.. ++..+++|.||+++.+..-.... ..|++++...+
T Consensus 259 ~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~-~~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~~~ 325 (632)
T PRK05506 259 FAGTVASGVVRPGDEVVVLPSGKTSRVKRIVT-PDGDLDEAFAGQAVTLTLADEIDISRGDMLARADN 325 (632)
T ss_pred EEEEEecceeecCCEEEEcCCCceEEEEEEEE-CCceeCEEcCCCeEEEEecCccccCCccEEecCCC
Confidence 67999999999999999965 4678999985 57789999999999885322111 47888886543
No 44
>PRK12739 elongation factor G; Reviewed
Probab=99.94 E-value=8e-25 Score=250.15 Aligned_cols=300 Identities=25% Similarity=0.225 Sum_probs=226.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc-----c-------------cccccCceeEeeeeEEEeecCCeEEEEEeCCCcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS-----L-------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~-----~-------------~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~ 248 (581)
.+.++|+|+||+|+|||||+++|+... . .....+|+|.+.....+.+ ++..++|+|||||.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHH
Confidence 356789999999999999999996421 1 0113578999999999988 89999999999999
Q ss_pred hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cc---------
Q 008003 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL--------- 318 (581)
Q Consensus 249 ~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~--------- 318 (581)
+|...+.++++.+|++++|+|+.++...++...+..+...++|+|+++||+|+...+.......+... +.
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEecc
Confidence 99999999999999999999999999999999999999899999999999999865433222222110 00
Q ss_pred ------------------hh----------------------------------------------------h-------
Q 008003 319 ------------------EL----------------------------------------------------E------- 321 (581)
Q Consensus 319 ------------------~~----------------------------------------------------~------- 321 (581)
.+ +
T Consensus 165 s~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~ 244 (691)
T PRK12739 165 GAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIR 244 (691)
T ss_pred cccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHH
Confidence 00 0
Q ss_pred ---hcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhc-----------------ccccCCCcceEEEEEEeecCCCcEE
Q 008003 322 ---DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL-----------------KARVDGPAQAYVVEARLDKGRGPLT 381 (581)
Q Consensus 322 ---~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~-----------------~~~~~~~~~~~V~e~~~~~~~G~v~ 381 (581)
..+.-+|++..||.++.|++.|++.|......+.. ..+++.|+.++|+....++..|.++
T Consensus 245 ~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~ 324 (691)
T PRK12739 245 KATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLT 324 (691)
T ss_pred HHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEE
Confidence 00122478888999999999999999876433211 1145678899999999999999999
Q ss_pred EEEEeccEEeeCcEEEEccc-----cceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHH
Q 008003 382 TAIVKAGTLVCGQHVVVGHE-----WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGR 456 (581)
Q Consensus 382 ~~~V~~GtLk~gd~i~~g~~-----~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r 456 (581)
.++|.+|+|+.||.|..... .+++..+.+....++.++.+|+.+.|.|+.+. ..||+++......
T Consensus 325 ~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~~--------- 394 (691)
T PRK12739 325 FFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDT-TTGDTLCDEKAPI--------- 394 (691)
T ss_pred EEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcc-cCCCEEeCCCCcc---------
Confidence 99999999999999986432 23455667777788999999999999999887 7899996432100
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEe
Q 008003 457 KKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFV 517 (581)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~ 517 (581)
.+. .+....+.+.+.|.+...+....|.++|.++..+...+
T Consensus 395 ------------------~l~--~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl 435 (691)
T PRK12739 395 ------------------ILE--SMEFPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTF 435 (691)
T ss_pred ------------------ccC--CCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeE
Confidence 000 01112456677788888888888888888777654333
No 45
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.8e-25 Score=230.98 Aligned_cols=234 Identities=26% Similarity=0.420 Sum_probs=197.3
Q ss_pred EEEEEccCCCCcchHhhhhhccc---ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~---~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.|+..||.++|||||+.++.+.. .......|+|.|+..+.+.. .+..+.|+|+|||++|...+..++...|.++||
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 58899999999999999998753 44556789999999999988 556999999999999999999999999999999
Q ss_pred EeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHH
Q 008003 268 VAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (581)
Q Consensus 268 vDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~ 346 (581)
||+++|++.|+.|++..+...+++ .++|+||+|+.+. .+..+.+.+...... ..+.+++++|+++|+||++|.+.
T Consensus 81 V~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r~e~~i~~Il~~l~--l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 81 VAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--ARIEQKIKQILADLS--LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred EeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH--HHHHHHHHHHHhhcc--cccccccccccccCCCHHHHHHH
Confidence 999999999999999999999988 6999999999743 222222221111111 13458899999999999999999
Q ss_pred HHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCc
Q 008003 347 LLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMP 424 (581)
Q Consensus 347 L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~ 424 (581)
|..+.+ ....+.+.|+..+|...|..+|.|+|++|.+.+|++++||.+++.+ ...+||+|.. ++.++++|.+|++
T Consensus 157 l~~L~~--~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~-~d~d~~~a~AG~R 233 (447)
T COG3276 157 LIDLLE--EIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQA-HDVDVEEAKAGQR 233 (447)
T ss_pred HHHhhh--hhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeee-cCcchhhccccce
Confidence 998776 4556678899999999999999999999999999999999999974 4568999985 8899999999999
Q ss_pred EEEeccCCC
Q 008003 425 VEIEGLKGL 433 (581)
Q Consensus 425 v~i~gl~~~ 433 (581)
|.+ .|++.
T Consensus 234 VgL-aL~~v 241 (447)
T COG3276 234 VGL-ALKGV 241 (447)
T ss_pred eee-ecCCC
Confidence 987 55554
No 46
>PRK00007 elongation factor G; Reviewed
Probab=99.94 E-value=8.9e-25 Score=249.68 Aligned_cols=301 Identities=27% Similarity=0.258 Sum_probs=228.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc-----c-------------cccccCceeEeeeeEEEeecCCeEEEEEeCCCcch
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS-----L-------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~-----~-------------~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~ 249 (581)
+-++|+|+||+|+|||||+|+|+... . .....+|+|.+.....+.+ ++..++|+|||||.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~ 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHVD 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcHH
Confidence 45799999999999999999996311 0 0113578999998888988 899999999999999
Q ss_pred hhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cc----------
Q 008003 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL---------- 318 (581)
Q Consensus 250 ~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~---------- 318 (581)
|.....++++.+|++++|+|+..|+..++..++..+...++|+|+++||+|+...+.......+.+. +.
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipis 167 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIG 167 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecCc
Confidence 9988899999999999999999999999999999999999999999999999765543322222100 00
Q ss_pred ---------------------h-------------------------------------hh-------------------
Q 008003 319 ---------------------E-------------------------------------LE------------------- 321 (581)
Q Consensus 319 ---------------------~-------------------------------------~~------------------- 321 (581)
. ++
T Consensus 168 a~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~ 247 (693)
T PRK00007 168 AEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAALRK 247 (693)
T ss_pred cCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 0 00
Q ss_pred --hcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhc------------------ccccCCCcceEEEEEEeecCCCcEE
Q 008003 322 --DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL------------------KARVDGPAQAYVVEARLDKGRGPLT 381 (581)
Q Consensus 322 --~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~------------------~~~~~~~~~~~V~e~~~~~~~G~v~ 381 (581)
..+..+|++..||+++.|++.|++.|......+.. ..+++.|+.++|+.+..++..|.++
T Consensus 248 ~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia 327 (693)
T PRK00007 248 ATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKLT 327 (693)
T ss_pred HHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCCcEE
Confidence 00123567888999999999999999875433211 1134667889999999999999999
Q ss_pred EEEEeccEEeeCcEEEEccc-----cceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHH
Q 008003 382 TAIVKAGTLVCGQHVVVGHE-----WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGR 456 (581)
Q Consensus 382 ~~~V~~GtLk~gd~i~~g~~-----~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r 456 (581)
+++|.+|+|+.||.|+.... .+++..+.+....++.++.+|+.+.|.|+.+. ..||+++..+...
T Consensus 328 ~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~GdtL~~~~~~~--------- 397 (693)
T PRK00007 328 FFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT-TTGDTLCDEKNPI--------- 397 (693)
T ss_pred EEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccC-CcCCEeeCCCCcc---------
Confidence 99999999999999986422 23555667777888999999999999999887 6899996432100
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeE
Q 008003 457 KKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV 519 (581)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i 519 (581)
.+. ......+.+.+-|.+...+....|.++|+++..+...+++
T Consensus 398 ------------------~l~--~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v 440 (693)
T PRK00007 398 ------------------ILE--SMEFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRV 440 (693)
T ss_pred ------------------ccC--CCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEE
Confidence 000 0011245677888888889999999999988876544444
No 47
>PRK15494 era GTPase Era; Provisional
Probab=99.94 E-value=8.5e-26 Score=237.44 Aligned_cols=245 Identities=16% Similarity=0.151 Sum_probs=178.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-hhH-------HHhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-FSA-------MRKRG 257 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-~~~-------~~~~~ 257 (581)
.+..+|+++|+||||||||+|+|.+..+. ++..+++|++.....+.. ++.++.||||||+.. +.. .....
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 35569999999999999999999988764 456778888877777766 788999999999732 221 11235
Q ss_pred cccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 258 AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 258 ~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
+..||++++|+|+.++........+..+...+.|.|+|+||+|+...........+. ......+++++||++|
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~-------~~~~~~~i~~iSAktg 201 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLT-------ENHPDSLLFPISALSG 201 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHH-------hcCCCcEEEEEeccCc
Confidence 789999999999988766655556666666678889999999996432222222221 1122357999999999
Q ss_pred CChhhHHHHHHHHHHHhhcc---------------------------cccCCCcceEEEEEEeecCCCcEEEEEEeccEE
Q 008003 338 TGLDDLEVALLLQAEMMNLK---------------------------ARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTL 390 (581)
Q Consensus 338 ~gI~eLl~~L~~~~~~~~~~---------------------------~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtL 390 (581)
.|+++|+++|...+..-++. .++-++..++.++.+.+.. .|.+
T Consensus 202 ~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~----------~~~~ 271 (339)
T PRK15494 202 KNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLK----------DKSV 271 (339)
T ss_pred cCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcC----------CCeE
Confidence 99999999998643211111 1223344445555544422 2456
Q ss_pred eeCcEEEEccccceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHH
Q 008003 391 VCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERAR 450 (581)
Q Consensus 391 k~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~ 450 (581)
++...|++.....| +.++|++|..+++++..++.+|+.+.+.++..+++++|...|+-+
T Consensus 272 ~i~~~i~v~~~sqk-~iiiG~~g~~ik~i~~~ar~~le~~~~~~v~l~l~Vkv~~~w~~~ 330 (339)
T PRK15494 272 KINQVIVVSRESYK-TIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRELWENN 330 (339)
T ss_pred EEEEEEEECCCCce-eEEEcCCcHHHHHHHHHHHHHHHHHhCCCeEEEEEEEECCCcccC
Confidence 66677777655554 788999999999999999999999999999999999999999643
No 48
>PRK13351 elongation factor G; Reviewed
Probab=99.93 E-value=1.4e-24 Score=248.59 Aligned_cols=299 Identities=27% Similarity=0.317 Sum_probs=225.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccccc------------------ccccCceeEeeeeEEEeecCCeEEEEEeCCCcch
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV------------------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~------------------~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~ 249 (581)
+..+|+|+||+|+|||||+++|+...-. .....++|.......+.+ ++..++|||||||.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence 4579999999999999999999742110 011356677777777777 789999999999999
Q ss_pred hhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cc----------
Q 008003 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL---------- 318 (581)
Q Consensus 250 ~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~---------- 318 (581)
|...+..+++.+|++++|+|++++...++...+..+...++|+++++||+|+...+.......+... +.
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P~~ 165 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPIG 165 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 9999999999999999999999999888989998888889999999999999876543333332110 00
Q ss_pred -----------------hh---------------------------------------------h---------------
Q 008003 319 -----------------EL---------------------------------------------E--------------- 321 (581)
Q Consensus 319 -----------------~~---------------------------------------------~--------------- 321 (581)
.+ +
T Consensus 166 ~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~ 245 (687)
T PRK13351 166 SEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLRE 245 (687)
T ss_pred cCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 00 0
Q ss_pred --hcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhc----------------ccccCCCcceEEEEEEeecCCCcEEEE
Q 008003 322 --DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL----------------KARVDGPAQAYVVEARLDKGRGPLTTA 383 (581)
Q Consensus 322 --~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~----------------~~~~~~~~~~~V~e~~~~~~~G~v~~~ 383 (581)
..+..+|++..||++|.|++.|++.|......+.. ..+++.|+.++|+.+..+++.|.++++
T Consensus 246 ~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~ 325 (687)
T PRK13351 246 GTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYL 325 (687)
T ss_pred HHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEE
Confidence 00124578888999999999999999876433321 114567889999999999999999999
Q ss_pred EEeccEEeeCcEEEEccc-----cceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHH
Q 008003 384 IVKAGTLVCGQHVVVGHE-----WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKK 458 (581)
Q Consensus 384 ~V~~GtLk~gd~i~~g~~-----~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~ 458 (581)
+|.+|+|+.||.|.+.+. .+++..+.+.....++++.+|+.+.|.|+.+. ..||+++...+.. .+
T Consensus 326 RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~~---~~------ 395 (687)
T PRK13351 326 RVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL-ETGDTLHDSADPV---LL------ 395 (687)
T ss_pred EEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccC-ccCCEEeCCCCcc---cc------
Confidence 999999999999988543 23556666777888999999999999999887 6799997433210 00
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEe
Q 008003 459 KFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFV 517 (581)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~ 517 (581)
. ......+.+.+.|.+....-.+.|.++|+++..+...+
T Consensus 396 ------------------~--~~~~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl 434 (687)
T PRK13351 396 ------------------E--LLTFPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSL 434 (687)
T ss_pred ------------------C--CCCCCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeE
Confidence 0 00112356777788888888888888888877654333
No 49
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.93 E-value=5.9e-24 Score=234.53 Aligned_cols=301 Identities=18% Similarity=0.214 Sum_probs=222.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc-ccc---------------------ccccCceeEeeeeEEEeecCCeEEEEEeC
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT-SLV---------------------AKEAGGITQHMGAFVVGMSTGASITFLDT 244 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~-~~~---------------------~~~~~g~T~d~~~~~~~~~~g~~i~liDT 244 (581)
.+..+|+|+||+|+|||||+++|+.. ..+ .....|+|.......+.+ ++..++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 45689999999999999999998531 110 011246666666677777 7899999999
Q ss_pred CCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cc-----
Q 008003 245 PGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL----- 318 (581)
Q Consensus 245 pG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~----- 318 (581)
|||.+|.....+++..+|++|+|+|+.+++..++...+..+...++|+++++||+|+...+..++...+... +.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 999999988888999999999999999999888888888888789999999999999765543322222110 00
Q ss_pred ----------------------hh-----------------------------------------h-----------hcC
Q 008003 319 ----------------------EL-----------------------------------------E-----------DWG 324 (581)
Q Consensus 319 ----------------------~~-----------------------------------------~-----------~~~ 324 (581)
.+ . ..+
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 247 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGG 247 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcC
Confidence 00 0 011
Q ss_pred CcceEEEEeccCCCChhhHHHHHHHHHHHhhccc-------ccCCCcceEEEEEEe--e-cCCCcEEEEEEeccEEeeCc
Q 008003 325 GKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-------RVDGPAQAYVVEARL--D-KGRGPLTTAIVKAGTLVCGQ 394 (581)
Q Consensus 325 ~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~-------~~~~~~~~~V~e~~~--~-~~~G~v~~~~V~~GtLk~gd 394 (581)
.-+|+++.||.++.|++.|++.|...+..+.... +.+.++.++|+.+.. + +.+|.+++++|.+|+++.|+
T Consensus 248 ~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~ 327 (527)
T TIGR00503 248 EMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGM 327 (527)
T ss_pred CeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEcCCC
Confidence 2357899999999999999999998664432211 124568899999876 6 47899999999999999999
Q ss_pred EEEEcccc--ceE---EEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 008003 395 HVVVGHEW--GRI---RAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKIN 469 (581)
Q Consensus 395 ~i~~g~~~--~kV---k~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~ 469 (581)
.|...+.. .++ ..+.+.+...+++|.||+.+.+.++... ..||+++. ... +
T Consensus 328 ~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~-~~GDtl~~-~~~-----~----------------- 383 (527)
T TIGR00503 328 KLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTI-QIGDTFTQ-GEK-----I----------------- 383 (527)
T ss_pred EEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCc-ccCCEecC-CCc-----e-----------------
Confidence 99875432 233 3456667788999999999999998886 78999975 210 1
Q ss_pred hhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeEE
Q 008003 470 EERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVV 520 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i~ 520 (581)
.+. .+....+.+..-|.+...+-.+.+..+|.+|..+.. +.+.
T Consensus 384 -----~~~--~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~ 426 (527)
T TIGR00503 384 -----KFT--GIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVF 426 (527)
T ss_pred -----eec--CCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEE
Confidence 000 011235677788899999999999999999887664 4443
No 50
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.3e-24 Score=216.05 Aligned_cols=252 Identities=23% Similarity=0.261 Sum_probs=193.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc---------------------------------ccccCceeEeeeeEEEee
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV---------------------------------AKEAGGITQHMGAFVVGM 233 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~---------------------------------~~~~~g~T~d~~~~~~~~ 233 (581)
+...+++-+|+++-|||||+.+|+.+.-. .....|+|.|+....+.+
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45689999999999999999999653110 112359999999888887
Q ss_pred cCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhhHHhh
Q 008003 234 STGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQ 312 (581)
Q Consensus 234 ~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~~~~~ 312 (581)
...+|.+.|||||+.|..++..+++.||++|+++|+..|+..|++.+--.....+++ +++++|||||.+.+.+.+.+.
T Consensus 84 -~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 84 -EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred -ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 889999999999999999999999999999999999999999999988777778887 999999999999888777666
Q ss_pred hhhccchhhhcC-CcceEEEEeccCCCChhh------------HHHHHHHHHHHhhc-ccccCCCcceEEEEEEee--cC
Q 008003 313 LGAEGLELEDWG-GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNL-KARVDGPAQAYVVEARLD--KG 376 (581)
Q Consensus 313 l~~~~~~~~~~~-~~~~ii~iSAktg~gI~e------------Ll~~L~~~~~~~~~-~~~~~~~~~~~V~e~~~~--~~ 376 (581)
..++.....+++ ....++|+||+.|+|+-. |++.|.. .+. ......++..+|..+... ..
T Consensus 163 ~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~----v~i~~~~~~~~~RfPVQ~V~Rp~~df 238 (431)
T COG2895 163 VADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILET----VEIADDRSAKAFRFPVQYVNRPNLDF 238 (431)
T ss_pred HHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhh----ccccccccccceeeceEEecCCCCcc
Confidence 655544444444 345899999999999863 5555543 211 112334455566554332 24
Q ss_pred CCcEEEEEEeccEEeeCcEEEEc--cccceEEEEEcccCCcccccCCCCcEEEeccCCCC-CCCCeEEEeCCH
Q 008003 377 RGPLTTAIVKAGTLVCGQHVVVG--HEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP-MAGDDIIVVDSE 446 (581)
Q Consensus 377 ~G~v~~~~V~~GtLk~gd~i~~g--~~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~-~~Gd~~~~v~~~ 446 (581)
+|. .|.+.+|++++||.|++- +...+|+.|...+| .+++|.+|+.|.+.--..+. ..||+++...+.
T Consensus 239 RGy--aGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg-~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~ 308 (431)
T COG2895 239 RGY--AGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG-ELAQASAGEAVTLVLADEIDISRGDLIVAADAP 308 (431)
T ss_pred ccc--ceeeeccceecCCeEEEccCCCeeeEEEEeccCC-chhhccCCceEEEEEcceeecccCcEEEccCCC
Confidence 554 688999999999999885 45678999987654 57999999999886555554 479999876654
No 51
>PRK12740 elongation factor G; Reviewed
Probab=99.92 E-value=5.4e-24 Score=243.27 Aligned_cols=294 Identities=28% Similarity=0.301 Sum_probs=224.2
Q ss_pred EccCCCCcchHhhhhhcccc------------------cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhh
Q 008003 195 MGHVDHGKTSLLDALRQTSL------------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKR 256 (581)
Q Consensus 195 vG~~n~GKSSLln~L~~~~~------------------~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~ 256 (581)
+||+|+|||||+++|....- .....+|+|.+.....+.+ +++.++|||||||.+|...+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~~~~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDFTGEVER 79 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHHHHHHHH
Confidence 69999999999999954211 0112468888888888888 8899999999999999988889
Q ss_pred ccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cch----------------
Q 008003 257 GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GLE---------------- 319 (581)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~~---------------- 319 (581)
++..+|++++|+|++.+...++...+..+...++|+++|+||+|+...+.......+.+. +..
T Consensus 80 ~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~ 159 (668)
T PRK12740 80 ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTG 159 (668)
T ss_pred HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceE
Confidence 999999999999999998888888888888889999999999999765543333332211 000
Q ss_pred -----------------------------------------h-------------------h----------hcCCcceE
Q 008003 320 -----------------------------------------L-------------------E----------DWGGKVQV 329 (581)
Q Consensus 320 -----------------------------------------~-------------------~----------~~~~~~~i 329 (581)
+ + ..+..+|+
T Consensus 160 ~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv 239 (668)
T PRK12740 160 VVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPV 239 (668)
T ss_pred EEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 0 0 01124578
Q ss_pred EEEeccCCCChhhHHHHHHHHHHHhhc---------------ccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCc
Q 008003 330 VEVSAVKKTGLDDLEVALLLQAEMMNL---------------KARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQ 394 (581)
Q Consensus 330 i~iSAktg~gI~eLl~~L~~~~~~~~~---------------~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd 394 (581)
+..||++|.|++.|++.|......+.. ..+++.++.++|+.+..+++.|.++.++|.+|+|+.||
T Consensus 240 ~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~ 319 (668)
T PRK12740 240 FCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGD 319 (668)
T ss_pred EeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCC
Confidence 899999999999999999875433321 12456778899999999999999999999999999999
Q ss_pred EEEEccc-----cceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 008003 395 HVVVGHE-----WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKIN 469 (581)
Q Consensus 395 ~i~~g~~-----~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~ 469 (581)
.|.+++. .+++..+.+.+...++++.+|+.+.+.|+..+ ..||+++...+..
T Consensus 320 ~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdtl~~~~~~~---------------------- 376 (668)
T PRK12740 320 TLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA-ATGDTLCDKGDPI---------------------- 376 (668)
T ss_pred EEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCcc-CCCCEEeCCCCcc----------------------
Confidence 9998653 23566677777889999999999999999865 7899997433210
Q ss_pred hhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeE
Q 008003 470 EERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV 519 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i 519 (581)
.+. ......+.+.+.|.+...+..++|.++|+++..+...+++
T Consensus 377 -----~~~--~~~~~~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v 419 (668)
T PRK12740 377 -----LLE--PMEFPEPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRV 419 (668)
T ss_pred -----ccC--CCCCCCcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEE
Confidence 000 0111256788889999999999999999988876555444
No 52
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=2.7e-24 Score=219.49 Aligned_cols=233 Identities=16% Similarity=0.143 Sum_probs=163.3
Q ss_pred EEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh--------hHHHhhccccc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF--------SAMRKRGAAVT 261 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~--------~~~~~~~~~~a 261 (581)
+|+++|+||+|||||+|+|.+..+ .++..++||++........ ++..+.||||||+... ......++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 689999999999999999999875 4677888999866554444 6678999999996432 11234567899
Q ss_pred cEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 262 DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 262 DivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|++++|+|+++....+ ...+..+...+.|+++|+||+|+.. ........... .......+++++||++|.|++
T Consensus 81 Dvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~----~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKY----AILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHH----HhhcCCCceEEEecCCCCCHH
Confidence 9999999999865443 4445556667899999999999963 22222222111 111122378999999999999
Q ss_pred hHHHHHHHHHHHhhccc---------------------------ccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCc
Q 008003 342 DLEVALLLQAEMMNLKA---------------------------RVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQ 394 (581)
Q Consensus 342 eLl~~L~~~~~~~~~~~---------------------------~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd 394 (581)
+|+++|.......++.. ++-++...+.++.+.... .|.+++..
T Consensus 154 ~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~----------~~~~~i~~ 223 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNE----------KGLLKIHA 223 (270)
T ss_pred HHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECC----------CCeEEEEE
Confidence 99999986532211111 112222333333333321 25566666
Q ss_pred EEEEccccceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEE
Q 008003 395 HVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIV 442 (581)
Q Consensus 395 ~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~ 442 (581)
.|++.....| +.++|++|+.++.++..++-+|..+.+.+++.+++++
T Consensus 224 ~i~v~~~s~k-~iiig~~g~~ik~i~~~ar~~l~~~~~~~v~l~l~vk 270 (270)
T TIGR00436 224 LISVERESQK-KIIIGKNGSMIKAIGIAARKDILELFDCDVFLELFVK 270 (270)
T ss_pred EEEECcCCce-eEEEcCCcHHHHHHHHHHHHHHHHHhCCCEEEEEEEC
Confidence 6777655554 7889999999999999999999999999988888763
No 53
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=1.7e-23 Score=196.68 Aligned_cols=162 Identities=65% Similarity=0.979 Sum_probs=132.5
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec--CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~--~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
|.|+|+|++|+|||||+|+|....+.....+++|++.....+... .+..+.||||||+..|..++..++..+|++++|
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v 80 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence 579999999999999999999988777777889998877777763 378999999999999999998899999999999
Q ss_pred EeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchh-hhcCCcceEEEEeccCCCChhhHHHH
Q 008003 268 VAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLEL-EDWGGKVQVVEVSAVKKTGLDDLEVA 346 (581)
Q Consensus 268 vDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~-~~~~~~~~ii~iSAktg~gI~eLl~~ 346 (581)
+|++++...++.+.+..+...++|+++|+||+|+.....+.....+....... ..++..++++++||++|.|+++|+++
T Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T cd01887 81 VAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEA 160 (168)
T ss_pred EECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHH
Confidence 99998877888888877777899999999999997554444444443322211 12334568999999999999999999
Q ss_pred HHHHH
Q 008003 347 LLLQA 351 (581)
Q Consensus 347 L~~~~ 351 (581)
|....
T Consensus 161 l~~~~ 165 (168)
T cd01887 161 ILLLA 165 (168)
T ss_pred HHHhh
Confidence 98754
No 54
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6e-23 Score=218.92 Aligned_cols=324 Identities=19% Similarity=0.240 Sum_probs=233.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc-------------------------------cccccccCceeEeeeeEEEeecCC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT-------------------------------SLVAKEAGGITQHMGAFVVGMSTG 236 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~-------------------------------~~~~~~~~g~T~d~~~~~~~~~~g 236 (581)
.....+++||+++|||||+.+|+.. ........|+|.++....++. ..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes-~~ 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES-KS 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-Cc
Confidence 4578999999999999999998431 011223579999999999986 78
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCC-------ChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhh
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-------MPQTLEAIAHANAANVP-IVVAINKCDKPAADPER 308 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-------~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~ 308 (581)
..++|+|+|||.+|...+..++..||+++||+|++.+. ..|+.++...++..|+. +||++||+|+.+++.++
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHH
Confidence 99999999999999999999999999999999999743 46889999999999986 99999999999999888
Q ss_pred HHhhhhhccchh-hhcC---CcceEEEEeccCCCChhh---------------HHHHHHHHHHHhhcccccCCCcceEEE
Q 008003 309 VKNQLGAEGLEL-EDWG---GKVQVVEVSAVKKTGLDD---------------LEVALLLQAEMMNLKARVDGPAQAYVV 369 (581)
Q Consensus 309 ~~~~l~~~~~~~-~~~~---~~~~ii~iSAktg~gI~e---------------Ll~~L~~~~~~~~~~~~~~~~~~~~V~ 369 (581)
+.......+..+ +..| .++.|+|||+.+|+|+-. |++.|.. ...+ ..+.+.|+...|.
T Consensus 335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p--~~~~~kPl~ltIs 411 (603)
T KOG0458|consen 335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIP--ERPIDKPLRLTIS 411 (603)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCC--CCcccCCeEEEhh
Confidence 776655554444 2222 456899999999999853 3333333 2222 2235669999999
Q ss_pred EEEeecCCCcEEEEEEeccEEeeCcEEEEccc--cceEEEEEcccCCcccccCCCCcEEEeccCCC-C---CCCCeEEEe
Q 008003 370 EARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGL-P---MAGDDIIVV 443 (581)
Q Consensus 370 e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~-~---~~Gd~~~~v 443 (581)
+++..++.|..++|++.+|.++.||.|++++. .+.|+.+.. +.++...+-+|+.|.+ +|.++ | ..|++++.
T Consensus 412 di~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~-~~~~~~~a~AGD~Vsl-~L~~i~~n~v~~g~i~~~- 488 (603)
T KOG0458|consen 412 DIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTS-NDEPKTWAVAGDNVSL-KLPGILPNLVQVGDIADS- 488 (603)
T ss_pred heeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeec-CCCcceeEeeCCEEEE-ecCccChhhcccceeeec-
Confidence 99999999999999999999999999999754 578999975 4677778888998876 44442 1 46777763
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCc---ccHHHHHHHHHhcCCCceEeeEE
Q 008003 444 DSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQ---GTVQAVTDALKTLNSPQLFVNVV 520 (581)
Q Consensus 444 ~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~---Gs~eAi~~~l~~~~~~~~~~~i~ 520 (581)
.....-+.. .. .......++- + -+-.+..++++-.... ..+--+...+++.+++-++.+++
T Consensus 489 ~~~~~i~~~----------~~----f~~~~~~f~~-~-~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR 552 (603)
T KOG0458|consen 489 GPQFPISKT----------TR----FVARITTFDI-N-LPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPR 552 (603)
T ss_pred CCCccccce----------eE----EEEEEEEeec-c-ccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccc
Confidence 111110000 00 0000111110 0 0234566777754433 44455666777777777888878
Q ss_pred EeccCccchhhhhh
Q 008003 521 HVGVGSVTQSDVDL 534 (581)
Q Consensus 521 ~~~vG~it~~Dv~~ 534 (581)
..+-|+.....++.
T Consensus 553 ~L~~~~~a~vele~ 566 (603)
T KOG0458|consen 553 CLTSNQSAIVELET 566 (603)
T ss_pred eeccCceeeeeccc
Confidence 88887777766665
No 55
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=7.9e-24 Score=218.44 Aligned_cols=243 Identities=21% Similarity=0.191 Sum_probs=174.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh--------hHHHhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF--------SAMRKRGA 258 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~--------~~~~~~~~ 258 (581)
+...|+++|+||+|||||+|+|.+.++ ..+..+.+|++........ ++..+.|+||||+... .......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 566899999999999999999999876 4566777887766555544 5689999999996432 22334567
Q ss_pred ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 259 ~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
..+|++++|+|++++........+..+...+.|+++|+||+|+... .......+... ....+..+++++||++|.
T Consensus 83 ~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~-~~~l~~~~~~l----~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD-KEELLPLLEEL----SELMDFAEIVPISALKGD 157 (292)
T ss_pred hcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC-HHHHHHHHHHH----HhhCCCCeEEEecCCCCC
Confidence 8999999999999866666666667676667899999999999632 12222222211 111124579999999999
Q ss_pred ChhhHHHHHHHHHHHhhcccc---------------------------cCCCcceEEEEEEeecCCCcEEEEEEeccEEe
Q 008003 339 GLDDLEVALLLQAEMMNLKAR---------------------------VDGPAQAYVVEARLDKGRGPLTTAIVKAGTLV 391 (581)
Q Consensus 339 gI~eLl~~L~~~~~~~~~~~~---------------------------~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk 391 (581)
|+++|+++|.......++..+ +-+...++.++.+.. .|.++
T Consensus 158 gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~------------~~~~~ 225 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEE------------RGLVR 225 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEE------------CCeEE
Confidence 999999999865421111111 112222222332222 25667
Q ss_pred eCcEEEEccccceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHH
Q 008003 392 CGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERA 449 (581)
Q Consensus 392 ~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a 449 (581)
+...|++.....| ..++|++|+.++.++..++-++..+.+.++..+++++|...|+-
T Consensus 226 i~~~i~v~~~~~k-~i~ig~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vkv~~~w~~ 282 (292)
T PRK00089 226 IEATIYVERDSQK-GIIIGKGGAMLKKIGTEARKDIEKLLGKKVFLELWVKVKKGWRD 282 (292)
T ss_pred EEEEEEEccCCce-eEEEeCCcHHHHHHHHHHHHHHHHHhCCCEEEEEEEEECCCccC
Confidence 7777777655554 78899999999999999999999999999999999999999964
No 56
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=7.4e-24 Score=204.61 Aligned_cols=162 Identities=33% Similarity=0.469 Sum_probs=128.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc------------------cccccCceeEeeeeEEEe--ecCCeEEEEEeCCCc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL------------------VAKEAGGITQHMGAFVVG--MSTGASITFLDTPGH 247 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~------------------~~~~~~g~T~d~~~~~~~--~~~g~~i~liDTpG~ 247 (581)
+-++|+++||+|+|||||+++|..... ......++|.+.....+. . ++..++|+|||||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence 346899999999999999999975321 112346788888888887 5 8899999999999
Q ss_pred chhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCC--
Q 008003 248 AAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGG-- 325 (581)
Q Consensus 248 ~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~-- 325 (581)
.+|...+.+++..+|++|+|+|+.+|...++.+++..+...++|+|+|+||+|+...+..+...++.........+.+
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEE 160 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTS
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccc
Confidence 999999999999999999999999999999999999999999999999999999733222333332211111111122
Q ss_pred cceEEEEeccCCCChhhHHHHHHHH
Q 008003 326 KVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 326 ~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
.+|++++||++|.|+++|+++|...
T Consensus 161 ~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 161 IVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp TEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred cceEEEEecCCCCCHHHHHHHHHHh
Confidence 5799999999999999999999764
No 57
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.2e-23 Score=202.06 Aligned_cols=251 Identities=31% Similarity=0.384 Sum_probs=181.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc----------------cccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT----------------SLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~----------------~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~ 251 (581)
...+|+.+||.++|||||..+|... +.......|+|.......++. ....+-.+|+|||.+|.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaDYv 89 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADYV 89 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHHHH
Confidence 4578999999999999999998431 122334579999998888887 78999999999999999
Q ss_pred HHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCCh------hhHHhhhhhccchhhhcC
Q 008003 252 AMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADP------ERVKNQLGAEGLELEDWG 324 (581)
Q Consensus 252 ~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~------~~~~~~l~~~~~~~~~~~ 324 (581)
+++..++.+.|.+|||+++++|.++|+++++...+..++| +++++||+|+.+... .++++.+..+++ -+
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f----~g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF----PG 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC----CC
Confidence 9999999999999999999999999999999999999998 889999999986311 112222223222 23
Q ss_pred CcceEEEEeccCC-CC-------hhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEE
Q 008003 325 GKVQVVEVSAVKK-TG-------LDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHV 396 (581)
Q Consensus 325 ~~~~ii~iSAktg-~g-------I~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i 396 (581)
.+.|++.-||+.- +| |.+|++++... ++.+..+.+.|+..+|-+++...|+|++++|+|.+|+|+.|+.+
T Consensus 166 d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~y--ip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~ev 243 (394)
T COG0050 166 DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSY--IPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEV 243 (394)
T ss_pred CCcceeechhhhhhcCCcchHHHHHHHHHHHHhc--CCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEE
Confidence 5678888888642 33 34444444432 23344567889999999999999999999999999999999998
Q ss_pred EE-ccccceEEEEE--cccCCcccccCCCCcEEE--eccCCCC-CCCCeEEEeCC
Q 008003 397 VV-GHEWGRIRAIR--DMVGKSTDKARPAMPVEI--EGLKGLP-MAGDDIIVVDS 445 (581)
Q Consensus 397 ~~-g~~~~kVk~i~--~~~g~~v~~a~~~~~v~i--~gl~~~~-~~Gd~~~~v~~ 445 (581)
.+ |-...+-.... .+..+.+.+..+|+.+-+ .|...-. ..|..+++..+
T Consensus 244 eivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgs 298 (394)
T COG0050 244 EIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGS 298 (394)
T ss_pred EEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCCc
Confidence 87 32211111111 123455666667776643 3433211 35666665544
No 58
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.8e-22 Score=223.17 Aligned_cols=313 Identities=28% Similarity=0.321 Sum_probs=235.3
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc--------c----------cccccCceeEeeeeEEEeecCC-eEEEEEeCCC
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS--------L----------VAKEAGGITQHMGAFVVGMSTG-ASITFLDTPG 246 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~--------~----------~~~~~~g~T~d~~~~~~~~~~g-~~i~liDTpG 246 (581)
..+-.+|+|+||.++|||||..+|+... . .....+|+|.......+.+ ++ +.++|+||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence 4566899999999999999999995311 1 1123469999999999988 65 9999999999
Q ss_pred cchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc----------
Q 008003 247 HAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE---------- 316 (581)
Q Consensus 247 ~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~---------- 316 (581)
|-+|.....+.++.+|++++|+|+..|+.+|+...|+++...++|.++++||+|....+.......+...
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~ 165 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQL 165 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeec
Confidence 9999999999999999999999999999999999999999999999999999999765432221111000
Q ss_pred ----------------------c----------------------------------chhhh-c----------------
Q 008003 317 ----------------------G----------------------------------LELED-W---------------- 323 (581)
Q Consensus 317 ----------------------~----------------------------------~~~~~-~---------------- 323 (581)
+ ...+. +
T Consensus 166 pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~ 245 (697)
T COG0480 166 PIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRK 245 (697)
T ss_pred cccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHH
Confidence 0 00000 0
Q ss_pred ----CCcceEEEEeccCCCChhhHHHHHHHHHHHhhc------------------ccccCCCcceEEEEEEeecCCCcEE
Q 008003 324 ----GGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL------------------KARVDGPAQAYVVEARLDKGRGPLT 381 (581)
Q Consensus 324 ----~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~------------------~~~~~~~~~~~V~e~~~~~~~G~v~ 381 (581)
+...|+++-||.++.|++.|++++......+.. ..+.+.|+.+.++.+..++..|.++
T Consensus 246 ~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~ 325 (697)
T COG0480 246 GTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLT 325 (697)
T ss_pred hhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCeEE
Confidence 014578888999999999999999875433210 2244788999999999999999999
Q ss_pred EEEEeccEEeeCcEEEEcccc--ceEE---EEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHH
Q 008003 382 TAIVKAGTLVCGQHVVVGHEW--GRIR---AIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGR 456 (581)
Q Consensus 382 ~~~V~~GtLk~gd~i~~g~~~--~kVk---~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r 456 (581)
.++|.+|+|+.|+.++.++.. .+|- .|.+.....++++.+|+.+.+.|+++. .+||+++... ....
T Consensus 326 ~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~-~tGdTl~~~~-~~v~------- 396 (697)
T COG0480 326 FVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA-TTGDTLCDEN-KPVI------- 396 (697)
T ss_pred EEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEccccc-ccCCeeecCC-Cccc-------
Confidence 999999999999999987554 3444 445555667999999999999999997 7999999765 2100
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeE---------EEeccCcc
Q 008003 457 KKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV---------VHVGVGSV 527 (581)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i---------~~~~vG~i 527 (581)
++ .+.--.+.+.+-|-+......+.+..+|+++..++..+.+ +-+|.|.+
T Consensus 397 -------------------~~--~~~~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGEL 455 (697)
T COG0480 397 -------------------LE--SMEFPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGEL 455 (697)
T ss_pred -------------------cc--cccCCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchh
Confidence 00 0111145677778888888889999999888766433333 34566666
Q ss_pred ch
Q 008003 528 TQ 529 (581)
Q Consensus 528 t~ 529 (581)
.-
T Consensus 456 HL 457 (697)
T COG0480 456 HL 457 (697)
T ss_pred hH
Confidence 53
No 59
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.89 E-value=1.7e-22 Score=232.16 Aligned_cols=302 Identities=24% Similarity=0.303 Sum_probs=209.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc-c---------------cccccCceeEeeeeEEEee--c-CCeEEEEEeCCCcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS-L---------------VAKEAGGITQHMGAFVVGM--S-TGASITFLDTPGHA 248 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~-~---------------~~~~~~g~T~d~~~~~~~~--~-~g~~i~liDTpG~~ 248 (581)
+.++|+|+||+|+|||||+++|+... . ......|+|.+.....+.+ . +++.++|+|||||.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 45789999999999999999996521 1 0112346776665444433 2 46889999999999
Q ss_pred hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC----hhhHHhhhhh----ccchh
Q 008003 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD----PERVKNQLGA----EGLEL 320 (581)
Q Consensus 249 ~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~----~~~~~~~l~~----~~~~~ 320 (581)
+|.....++++.+|++|+|+|+..|+..++..+|..+...+.|.|+++||+|+...+ .+.....+.. ....+
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l 178 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLI 178 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877889999999999986432 1121111110 00000
Q ss_pred -----h----hc---CCcceEEEEeccCCCChh----------------------------------hHHHHHHHHHHHh
Q 008003 321 -----E----DW---GGKVQVVEVSAVKKTGLD----------------------------------DLEVALLLQAEMM 354 (581)
Q Consensus 321 -----~----~~---~~~~~ii~iSAktg~gI~----------------------------------eLl~~L~~~~~~~ 354 (581)
. .| ...-.+++.||+.+.|+. .|++.|......+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP 258 (731)
T PRK07560 179 KGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNP 258 (731)
T ss_pred HHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCCh
Confidence 0 00 011246678999988776 5666666533222
Q ss_pred hc-----------------------ccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc--cceEEEE-
Q 008003 355 NL-----------------------KARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAI- 408 (581)
Q Consensus 355 ~~-----------------------~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~kVk~i- 408 (581)
.. ..+++.|+.++|+....+++.|.+++++|.+|+|+.||.|.+.+. ..+|+.|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~ 338 (731)
T PRK07560 259 IEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVG 338 (731)
T ss_pred hhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheeh
Confidence 10 113456788999999999999999999999999999999987432 3455554
Q ss_pred --EcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCc
Q 008003 409 --RDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRA 486 (581)
Q Consensus 409 --~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (581)
.+.+..+++++.+|+.+.|.|+.+. ..||+++....... + ..+. ....+
T Consensus 339 ~~~g~~~~~v~~a~AGdIv~i~gl~~~-~~GdtL~~~~~~~~---~---------------------~~~~----~~p~P 389 (731)
T PRK07560 339 IYMGPEREEVEEIPAGNIAAVTGLKDA-RAGETVVSVEDMTP---F---------------------ESLK----HISEP 389 (731)
T ss_pred hhhcCCCceeeeECCCCEEEEEccccc-ccCCEEeCCCcccc---c---------------------cccc----cCCCC
Confidence 4556678999999999999999876 57999974321100 0 0000 01235
Q ss_pred ccCEEEEecCcccHHHHHHHHHhcCCCceEee
Q 008003 487 EMPVIVKADVQGTVQAVTDALKTLNSPQLFVN 518 (581)
Q Consensus 487 ~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~ 518 (581)
.+.+-|.+...+-.+.|.++|.++..+...+.
T Consensus 390 v~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~ 421 (731)
T PRK07560 390 VVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLV 421 (731)
T ss_pred eEEEEEEECCHHHHHHHHHHHHHHHhhCCcEE
Confidence 66677777888888888888887776543333
No 60
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=2.4e-22 Score=211.06 Aligned_cols=163 Identities=26% Similarity=0.356 Sum_probs=134.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc-cccccccCceeEeeeeEEEeecCCeEEEEEeCCCcc----------hhhHHH-
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT-SLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA----------AFSAMR- 254 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~-~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~----------~~~~~~- 254 (581)
..+++|+|+|.||+|||||+|+|+++ +.+++..+|||+|.....+.+ ++..+.|+||+|.+ .|...+
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 56899999999999999999999986 578899999999999999998 89999999999954 333333
Q ss_pred hhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEE
Q 008003 255 KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVE 331 (581)
Q Consensus 255 ~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~ 331 (581)
...+..||++++|+|++++...|+.....++...+.++++|+||||+...+ .+.....+... -.+-...++++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~----l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRK----LPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHH----hccccCCeEEE
Confidence 357789999999999999999999999999999999999999999997542 22233333221 12224568999
Q ss_pred EeccCCCChhhHHHHHHHHHHHh
Q 008003 332 VSAVKKTGLDDLEVALLLQAEMM 354 (581)
Q Consensus 332 iSAktg~gI~eLl~~L~~~~~~~ 354 (581)
+||++|.|+.+|++++....+..
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHh
Confidence 99999999999999998765543
No 61
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.89 E-value=3.7e-22 Score=186.36 Aligned_cols=156 Identities=33% Similarity=0.492 Sum_probs=117.0
Q ss_pred EEEEEccCCCCcchHhhhhhccc---ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~---~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.|+++|++|+|||||+|+|.+.. +.....+++|.+.....+.+.++..+.+|||||++.|......++..+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68999999999999999998743 233345678888877777663378999999999999988778889999999999
Q ss_pred EeccCCCChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhc-CCcceEEEEeccCCCChhhHH
Q 008003 268 VAADDGVMPQTLEAIAHANAANV-PIVVAINKCDKPAADP-ERVKNQLGAEGLELEDW-GGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 268 vDa~~g~~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~-~~~~~ii~iSAktg~gI~eLl 344 (581)
+|++++...++.+.+..+...+. |+++|+||+|+..... ......+.+. +... ....+++++||++|.|+++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~v~~l~ 158 (164)
T cd04171 82 VAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIREL---LAGTFLADAPIFPVSAVTGEGIEELK 158 (164)
T ss_pred EECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHH---HHhcCcCCCcEEEEeCCCCcCHHHHH
Confidence 99998777777776665555555 8999999999964311 1111111111 1111 124589999999999999999
Q ss_pred HHHHH
Q 008003 345 VALLL 349 (581)
Q Consensus 345 ~~L~~ 349 (581)
+.|..
T Consensus 159 ~~l~~ 163 (164)
T cd04171 159 EYLDE 163 (164)
T ss_pred HHHhh
Confidence 98753
No 62
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=2.5e-22 Score=211.74 Aligned_cols=211 Identities=21% Similarity=0.261 Sum_probs=145.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHcccccccCCCCCChhHHH----HHHHHh---CCceeeecC-CcCCCCCC---CCCE
Q 008003 123 GMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVAE----LVVMEL---GFNVRRIHS-SEGTEILP---RPPV 191 (581)
Q Consensus 123 ~~a~~~l~g~l~~~~~~l~~~L~~~~~~ie~~~~~~~~d~~~----~i~~~~---~~~~~~l~~-~~~~~~~~---~~~~ 191 (581)
++++.+|.+.++..+..|+. |..+++.++. ...+++..+ .+...+ ...+..+.. ...+...+ ..++
T Consensus 115 qv~la~l~~~l~r~~~~~~~-l~~~~~~i~~--~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ 191 (351)
T TIGR03156 115 QVELAQLKYLLPRLVGGWTH-LSRQGGGIGT--RGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPT 191 (351)
T ss_pred HHHHHhccchhhhhhhhHHH-HHhhcCCCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcE
Confidence 78899999999999999988 8888777743 222221111 111111 111111111 11222222 4589
Q ss_pred EEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCc-c--------hhhHHHhhcccccc
Q 008003 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH-A--------AFSAMRKRGAAVTD 262 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~-~--------~~~~~~~~~~~~aD 262 (581)
|+++|.||+|||||+|+|.+..+.++..+++|.|.....+.++++.++.||||||. + .|.... ..+..||
T Consensus 192 ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~AD 270 (351)
T TIGR03156 192 VALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREAD 270 (351)
T ss_pred EEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCC
Confidence 99999999999999999999887777888999999888888867889999999996 2 233322 3578999
Q ss_pred EEEEEEeccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 263 IVVLVVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 263 ivllVvDa~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
++++|+|++++...+.. +.+..+...++|+++|+||+|+... .... ... . ...+++++||++|.
T Consensus 271 lil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~v~-~~~-------~--~~~~~i~iSAktg~ 338 (351)
T TIGR03156 271 LLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PRIE-RLE-------E--GYPEAVFVSAKTGE 338 (351)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--HhHH-HHH-------h--CCCCEEEEEccCCC
Confidence 99999999986544333 2333333347899999999999642 1111 110 0 11368999999999
Q ss_pred ChhhHHHHHHH
Q 008003 339 GLDDLEVALLL 349 (581)
Q Consensus 339 gI~eLl~~L~~ 349 (581)
|+++|+++|..
T Consensus 339 GI~eL~~~I~~ 349 (351)
T TIGR03156 339 GLDLLLEAIAE 349 (351)
T ss_pred CHHHHHHHHHh
Confidence 99999999865
No 63
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.88 E-value=6.6e-22 Score=226.82 Aligned_cols=303 Identities=23% Similarity=0.279 Sum_probs=200.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc---------------cc-cccccCceeEeeeeEE----EeecCCeEEEEEeCCCc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT---------------SL-VAKEAGGITQHMGAFV----VGMSTGASITFLDTPGH 247 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~---------------~~-~~~~~~g~T~d~~~~~----~~~~~g~~i~liDTpG~ 247 (581)
+.++|+|+||+|+|||||+++|... .+ ......|+|.+..... +.+ +++.++|||||||
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG~ 96 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPGH 96 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCCc
Confidence 4579999999999999999999642 11 1112256676654333 333 6789999999999
Q ss_pred chhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChh----hHHhhhhhc----cch
Q 008003 248 AAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE----RVKNQLGAE----GLE 319 (581)
Q Consensus 248 ~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~----~~~~~l~~~----~~~ 319 (581)
.+|......+++.+|++|+|+|+.+|+..++...+..+...+.|+++++||+|+...+.. .....+... ...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~ 176 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNKL 176 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhh
Confidence 999998999999999999999999999999999998887888999999999999643221 111111100 000
Q ss_pred hh-----h----cC---CcceEEEEeccCC------------CC----------------------hhhHHHHHHHHHHH
Q 008003 320 LE-----D----WG---GKVQVVEVSAVKK------------TG----------------------LDDLEVALLLQAEM 353 (581)
Q Consensus 320 ~~-----~----~~---~~~~ii~iSAktg------------~g----------------------I~eLl~~L~~~~~~ 353 (581)
+. . +. ........|++.+ .+ ++.|++.|......
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPs 256 (720)
T TIGR00490 177 IKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPS 256 (720)
T ss_pred hhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCC
Confidence 00 0 00 0001122233333 11 12334444332111
Q ss_pred hh-----------------------cccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEE
Q 008003 354 MN-----------------------LKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAI 408 (581)
Q Consensus 354 ~~-----------------------~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i 408 (581)
+. ...+++.|+.++|+++..+++.|.+++++|.+|+|+.||.|++.+ ...+|+.|
T Consensus 257 P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l 336 (720)
T TIGR00490 257 PIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQV 336 (720)
T ss_pred hhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEE
Confidence 10 001345678899999998999999999999999999999998743 34456555
Q ss_pred ---EcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCC
Q 008003 409 ---RDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKR 485 (581)
Q Consensus 409 ---~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (581)
.+....+++++.+|+.+.|.|++++ ..||+++.....- .. +.. -.....
T Consensus 337 ~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~~~--~~------------------------~~~-~~~~~~ 388 (720)
T TIGR00490 337 GVYMGPERVEVDEIPAGNIVAVIGLKDA-VAGETICTTVENI--TP------------------------FES-IKHISE 388 (720)
T ss_pred EEeccCCccCccEECCCCEEEEECcccc-ccCceeecCCccc--cc------------------------Ccc-cccCCC
Confidence 4455678999999999999999887 5899997432110 00 000 000123
Q ss_pred cccCEEEEecCcccHHHHHHHHHhcCCCceEeeE
Q 008003 486 AEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV 519 (581)
Q Consensus 486 ~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i 519 (581)
+.+.+-|.+...+..+.+.++|.++..+...+.+
T Consensus 389 Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v 422 (720)
T TIGR00490 389 PVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHV 422 (720)
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEE
Confidence 5667778888888888888888887766544443
No 64
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=99.88 E-value=1.5e-23 Score=183.16 Aligned_cols=89 Identities=36% Similarity=0.671 Sum_probs=82.8
Q ss_pred CCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeEEEeccCccchhhhhhhhccCCEEEEecCCCChhHHHHHHHHcCc
Q 008003 484 KRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGI 563 (581)
Q Consensus 484 ~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i~~~~vG~it~~Dv~~A~~~~~~I~~Fnv~~~~~~~~~~a~~~~v 563 (581)
+.+.+|+|||||++||+|||.++|.++++++|+++|+++|||+||++||.+|++++++|+||||++++++ ++.|++.||
T Consensus 13 ~~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~~~a~Ii~FNv~~~~~~-~~~a~~~~V 91 (108)
T PF11987_consen 13 EIKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASASNAIIIAFNVKVSPDA-KDLAKKSGV 91 (108)
T ss_dssp CSSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHHHC-EEEESSS-B-HHH-HHCHHSSTS
T ss_pred CCceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHhhCCEEEEeeCCCCHHH-HHHHHHcCC
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred eEEEeeeecc
Q 008003 564 KTRLLGLLRP 573 (581)
Q Consensus 564 ~i~~~~ii~~ 573 (581)
+|++|+|||-
T Consensus 92 ~I~~~~VIY~ 101 (108)
T PF11987_consen 92 KIRSHNVIYD 101 (108)
T ss_dssp EEEESTTCCH
T ss_pred EEEEeCHHHH
Confidence 9999999993
No 65
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=8.8e-22 Score=197.26 Aligned_cols=237 Identities=25% Similarity=0.344 Sum_probs=189.3
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc-------cccccccCceeEeeeeEEEeecC--------CeEEEEEeCCCcchhhHH
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT-------SLVAKEAGGITQHMGAFVVGMST--------GASITFLDTPGHAAFSAM 253 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~-------~~~~~~~~g~T~d~~~~~~~~~~--------g~~i~liDTpG~~~~~~~ 253 (581)
..+++++||.++|||||..+|..- .-..+...|+|.|.+...+.... ...++|+|+|||......
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 478999999999999999999642 22345568999999887765432 246799999999999988
Q ss_pred HhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhh--HHhhhhh--ccchhhhcCCcceE
Q 008003 254 RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPER--VKNQLGA--EGLELEDWGGKVQV 329 (581)
Q Consensus 254 ~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~--~~~~l~~--~~~~~~~~~~~~~i 329 (581)
...+....|+.++|+|+..|.+.|+.+++-.....-...+||+||+|+...+... +...-.. ..+....++++.|+
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI 166 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPI 166 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCce
Confidence 8889999999999999999999999998876655556789999999986543211 1111111 12222345577899
Q ss_pred EEEeccCC----CChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEc--cccc
Q 008003 330 VEVSAVKK----TGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVG--HEWG 403 (581)
Q Consensus 330 i~iSAktg----~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g--~~~~ 403 (581)
+++||+.| ++|.+|.+.|... +..++.++..|+...|...+..+|.|++.+|.+.+|.++.|+.|.+. +..-
T Consensus 167 ~~vsa~~G~~~~~~i~eL~e~l~s~--if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~r 244 (522)
T KOG0461|consen 167 VEVSAADGYFKEEMIQELKEALESR--IFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKR 244 (522)
T ss_pred eEEecCCCccchhHHHHHHHHHHHh--hcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhh
Confidence 99999999 8999999998764 46677889999999999999999999999999999999999999984 5566
Q ss_pred eEEEEEcccCCcccccCCCCcEEEe
Q 008003 404 RIRAIRDMVGKSTDKARPAMPVEIE 428 (581)
Q Consensus 404 kVk~i~~~~g~~v~~a~~~~~v~i~ 428 (581)
|||+|. ....+|..|.+|++..+.
T Consensus 245 kVKslq-mf~~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 245 KVKSLQ-MFKQRVTSAAAGDRAGFC 268 (522)
T ss_pred hhhhHH-HHhhhhhhhhcccceeee
Confidence 889986 467788999999988654
No 66
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.7e-22 Score=198.14 Aligned_cols=252 Identities=29% Similarity=0.321 Sum_probs=186.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc----------------ccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ----------------TSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~----------------~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~ 250 (581)
....+|+-+||+++|||||..++.. ++.......|+|.......++. ...++--+|+|||.+|
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHADY 130 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchHHH
Confidence 3457899999999999999998843 1122334579999888877777 6788999999999999
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCCh-h-----hHHhhhhhccchhhhc
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADP-E-----RVKNQLGAEGLELEDW 323 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~-~-----~~~~~l~~~~~~~~~~ 323 (581)
.+++..+..+.|++|+|+.+++|.++|+++++..++..+++ +++.+||.|+.+... - +.++.+.++++ .
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf----~ 206 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF----D 206 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC----C
Confidence 99999999999999999999999999999999999999998 899999999984321 1 12222333332 3
Q ss_pred CCcceEEEEecc---CCC----C---hhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeC
Q 008003 324 GGKVQVVEVSAV---KKT----G---LDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCG 393 (581)
Q Consensus 324 ~~~~~ii~iSAk---tg~----g---I~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~g 393 (581)
|.+.|++.-||+ .|. | |.+|++++... ++.+..+.+.|+...|.+++...|+|++++|++++|+|++|
T Consensus 207 Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsy--ip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG 284 (449)
T KOG0460|consen 207 GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSY--IPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKG 284 (449)
T ss_pred CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhcc--CCCcccccCCCceeehhheeeecCCceEEEEEEeecccccC
Confidence 467899988876 342 2 33344443321 23344566788999999999999999999999999999999
Q ss_pred cEEEEccccceEEEEE---cccCCcccccCCCCcEEEe--ccCCCC-CCCCeEEEeCC
Q 008003 394 QHVVVGHEWGRIRAIR---DMVGKSTDKARPAMPVEIE--GLKGLP-MAGDDIIVVDS 445 (581)
Q Consensus 394 d~i~~g~~~~kVk~i~---~~~g~~v~~a~~~~~v~i~--gl~~~~-~~Gd~~~~v~~ 445 (581)
+.+-+-+....+++-. ...++.+++|.+|+.+-+. |++.-. ..|-++++..+
T Consensus 285 ~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 285 DEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred CEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 9998744333344432 2457889999999988553 444221 25555554443
No 67
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=5.9e-22 Score=208.12 Aligned_cols=151 Identities=23% Similarity=0.341 Sum_probs=127.6
Q ss_pred CEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh-----hH----HHhhccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-----SA----MRKRGAA 259 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~-----~~----~~~~~~~ 259 (581)
+.|+|+|.||||||||+|+|++++. ++++.||+|+|-......+ .+..|.++||+|.+.. .. ....++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE-cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 7899999999999999999999864 6889999999999999998 8889999999997632 22 2335789
Q ss_pred cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
.||++|||+|+..|+.+++.+....+...++|+|+|+||+|-. ..+....++..+++ -.++++||.+|.|
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~--~~e~~~~efyslG~--------g~~~~ISA~Hg~G 152 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL--KAEELAYEFYSLGF--------GEPVPISAEHGRG 152 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc--hhhhhHHHHHhcCC--------CCceEeehhhccC
Confidence 9999999999999999999999999998889999999999975 22333334444443 2689999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+.+|++++....
T Consensus 153 i~dLld~v~~~l 164 (444)
T COG1160 153 IGDLLDAVLELL 164 (444)
T ss_pred HHHHHHHHHhhc
Confidence 999999998865
No 68
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=2e-21 Score=188.13 Aligned_cols=162 Identities=30% Similarity=0.362 Sum_probs=119.5
Q ss_pred CEEEEEccCCCCcchHhhhhhcc-------cccccccCceeEeeeeEEEeec-------------CCeEEEEEeCCCcch
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT-------SLVAKEAGGITQHMGAFVVGMS-------------TGASITFLDTPGHAA 249 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~-------~~~~~~~~g~T~d~~~~~~~~~-------------~g~~i~liDTpG~~~ 249 (581)
.+|+++|++|+|||||+++|... .......+|+|.+.....+.+. .+..++|||||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999872 2233456788888877666552 267999999999988
Q ss_pred hhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC-hhhHHhhhhhc-cchhhhc-CCc
Q 008003 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD-PERVKNQLGAE-GLELEDW-GGK 326 (581)
Q Consensus 250 ~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~-~~~~~~~-~~~ 326 (581)
+......++..+|++++|+|++++...++.+.+......+.|+++++||+|+.... .+.....+.+. ...+... ...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKN 160 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 77776677888999999999999887777766665555688999999999996432 11112222111 1011111 134
Q ss_pred ceEEEEeccCCCChhhHHHHHHHHH
Q 008003 327 VQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 327 ~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
++++++||++|.|+++|+++|..+.
T Consensus 161 ~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 161 SPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CCEEEEeccCCCCHHHHHHHHHhcc
Confidence 6899999999999999999998754
No 69
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.87 E-value=2e-21 Score=184.98 Aligned_cols=156 Identities=33% Similarity=0.436 Sum_probs=114.9
Q ss_pred CEEEEEccCCCCcchHhhhhhccccc---------------ccccCceeEeeeeEEEee----cCCeEEEEEeCCCcchh
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLV---------------AKEAGGITQHMGAFVVGM----STGASITFLDTPGHAAF 250 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~---------------~~~~~g~T~d~~~~~~~~----~~g~~i~liDTpG~~~~ 250 (581)
.+|+++|++|+|||||+++|.+.... .....|+|.+.....+.+ ..+..+.||||||+++|
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 47999999999999999999874211 111335565544433322 14678999999999999
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEE
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVV 330 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii 330 (581)
..++..+++.+|++|+|+|++++...++...+..+...++|+++|+||+|+.+.........+.+.. .. ...+++
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~----~~-~~~~~~ 155 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVL----GL-DPSEAI 155 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHh----CC-CcccEE
Confidence 9999999999999999999998877777777766666789999999999996533222222222110 00 112589
Q ss_pred EEeccCCCChhhHHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~~ 350 (581)
++||++|.|+++|+++|...
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred EeeccCCCCHHHHHHHHHhh
Confidence 99999999999999999763
No 70
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.86 E-value=3.3e-21 Score=187.30 Aligned_cols=147 Identities=36% Similarity=0.452 Sum_probs=116.7
Q ss_pred CEEEEEccCCCCcchHhhhhhcccc----------------cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHH
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSL----------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM 253 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~----------------~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~ 253 (581)
.+|+++||+|+|||||+++|++... .....+|+|.+.....+.. ++..++|+|||||.+|...
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHHHHHH
Confidence 6899999999999999999975310 1123578999988887776 7889999999999999999
Q ss_pred HhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhh---HHhhhhhccchhhhcC---Cc
Q 008003 254 RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPER---VKNQLGAEGLELEDWG---GK 326 (581)
Q Consensus 254 ~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~---~~~~l~~~~~~~~~~~---~~ 326 (581)
+..++..+|++++|+|+..+...++.+++..+...++| +|+++||+|+... .+. ...++... +...+ .+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~-~~~~~~~~~~i~~~---l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDD-EELLELVEMEVREL---LSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCc-HHHHHHHHHHHHHH---HHHhcccccC
Confidence 99999999999999999999999999999999999998 7899999999632 211 11122211 22222 35
Q ss_pred ceEEEEeccCCCChh
Q 008003 327 VQVVEVSAVKKTGLD 341 (581)
Q Consensus 327 ~~ii~iSAktg~gI~ 341 (581)
++++++||++|.|+.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 799999999999864
No 71
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.86 E-value=5.6e-22 Score=184.47 Aligned_cols=147 Identities=22% Similarity=0.353 Sum_probs=110.1
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh------HHHhhcc--ccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS------AMRKRGA--AVT 261 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~------~~~~~~~--~~a 261 (581)
++|+++|.||+|||||+|+|.+.+..++..||+|.+.....+.+ ++..+.|+||||...+. .....++ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 47999999999999999999999998999999999999999988 78999999999943322 1222333 689
Q ss_pred cEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhH-HhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 262 DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV-KNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 262 DivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|++++|+|++. .........++...++|+++|+||+|+.....-.+ ...+.+ .+ .+|++++||++|+|+
T Consensus 80 D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~------~L--g~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 80 DLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSE------RL--GVPVIPVSARTGEGI 149 (156)
T ss_dssp SEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHH------HH--TS-EEEEBTTTTBTH
T ss_pred CEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHH------Hh--CCCEEEEEeCCCcCH
Confidence 99999999986 45666777888889999999999999842211000 111111 11 368999999999999
Q ss_pred hhHHHHH
Q 008003 341 DDLEVAL 347 (581)
Q Consensus 341 ~eLl~~L 347 (581)
++|+++|
T Consensus 150 ~~L~~~I 156 (156)
T PF02421_consen 150 DELKDAI 156 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999875
No 72
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.86 E-value=3.2e-20 Score=188.58 Aligned_cols=240 Identities=32% Similarity=0.438 Sum_probs=181.1
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhccccccc--------------ccCceeEeeeeEEEeecCC-------------
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAK--------------EAGGITQHMGAFVVGMSTG------------- 236 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~--------------~~~g~T~d~~~~~~~~~~g------------- 236 (581)
+..+....|+.+||+|+|||||+..|...+.... -..|.|.++....+-+++|
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 3356678999999999999999999965332211 1245565555544443222
Q ss_pred ---------eEEEEEeCCCcchhhHHHhhcc--ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC
Q 008003 237 ---------ASITFLDTPGHAAFSAMRKRGA--AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD 305 (581)
Q Consensus 237 ---------~~i~liDTpG~~~~~~~~~~~~--~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~ 305 (581)
.-+.|+||-||+.+-....+++ ...|..+|++.+++|.+..+.+++..+...+.|+|+|++|+|+.+.+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~dd 271 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDD 271 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHH
Confidence 3578999999999998887766 67899999999999999999999999999999999999999996532
Q ss_pred h-hhHHhhhhhc----c---ch------------hhhcC-CcceEEEEeccCCCChhhHHHHHHHHHHHhhc-ccccCCC
Q 008003 306 P-ERVKNQLGAE----G---LE------------LEDWG-GKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL-KARVDGP 363 (581)
Q Consensus 306 ~-~~~~~~l~~~----~---~~------------~~~~~-~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~-~~~~~~~ 363 (581)
. ..+.+++... + +. ..+.+ .-+|+|.+|+.||+|++-|.+.+..+ +.. ..+...|
T Consensus 272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L---p~rr~~~d~g~ 348 (527)
T COG5258 272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL---PKRRRWDDEGP 348 (527)
T ss_pred HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC---CcccccCCCCC
Confidence 1 1122221111 0 00 01112 25799999999999999888877652 222 2356778
Q ss_pred cceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc-cc-----eEEEEEcccCCcccccCCCCcEEE
Q 008003 364 AQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE-WG-----RIRAIRDMVGKSTDKARPAMPVEI 427 (581)
Q Consensus 364 ~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~-~~-----kVk~i~~~~g~~v~~a~~~~~v~i 427 (581)
+..+|.+.|...|.|+++.|.|++|.|+.||++++|+. .| +||+|. .|.-.+..|.+|..+.+
T Consensus 349 flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIe-mh~~rvdsa~aG~iig~ 417 (527)
T COG5258 349 FLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIE-MHHYRVDSAKAGSIIGI 417 (527)
T ss_pred eEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEE-EeeEEeccccCCcEEEE
Confidence 99999999999999999999999999999999999874 23 578886 57888999999988866
No 73
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.86 E-value=5.4e-21 Score=186.85 Aligned_cols=155 Identities=18% Similarity=0.249 Sum_probs=115.5
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.|+++|..|||||||++++....+...+.++++.++....+.+ ++ ..+.+|||||++.|..++..+++.+|++|+||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 6899999999999999999998887767777777777666766 44 78899999999999999999999999999999
Q ss_pred eccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 269 AADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 269 Da~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
|+++....+.. ..+......+.|+++|+||+|+..... +... .+..+........++++||++|.||+++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~--v~~~---~~~~~a~~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE--ISRQ---QGEKFAQQITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc--cCHH---HHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 99985433333 222222234689999999999953211 1110 01111111113579999999999999999
Q ss_pred HHHHHHH
Q 008003 345 VALLLQA 351 (581)
Q Consensus 345 ~~L~~~~ 351 (581)
++|....
T Consensus 156 ~~l~~~~ 162 (202)
T cd04120 156 LKLVDDI 162 (202)
T ss_pred HHHHHHH
Confidence 9998643
No 74
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=6.4e-21 Score=184.90 Aligned_cols=157 Identities=33% Similarity=0.396 Sum_probs=116.3
Q ss_pred CCEEEEEccCCCCcchHhhhhhc--cccccc--------------ccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQ--TSLVAK--------------EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~--~~~~~~--------------~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~ 252 (581)
..+|+++|++|+|||||+++|.+ ..+... ...|+|.+.....+.. ++..+.||||||+++|..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~ 80 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADFGG 80 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHHHH
Confidence 35899999999999999999986 222211 1256677666666666 789999999999999999
Q ss_pred HHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhh-h-cCCcceEE
Q 008003 253 MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELE-D-WGGKVQVV 330 (581)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~-~-~~~~~~ii 330 (581)
++..+++.+|++++|+|++++...++...+..+...++|+++|+||+|+...........+......+. . ....++++
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 160 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVL 160 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEE
Confidence 999999999999999999988777776666666667899999999999975444333333222211110 0 01245899
Q ss_pred EEeccCCCChhhHHHH
Q 008003 331 EVSAVKKTGLDDLEVA 346 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~ 346 (581)
++||++|.|+.++.++
T Consensus 161 ~~Sa~~g~~~~~~~~~ 176 (194)
T cd01891 161 YASAKNGWASLNLEDP 176 (194)
T ss_pred Eeehhccccccccccc
Confidence 9999999998766443
No 75
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.85 E-value=5e-21 Score=188.01 Aligned_cols=152 Identities=24% Similarity=0.297 Sum_probs=113.7
Q ss_pred EEEEEccCCCCcchHhhhhhccc-ccc------------------------------cccCceeEeeeeEEEeecCCeEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTS-LVA------------------------------KEAGGITQHMGAFVVGMSTGASI 239 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~-~~~------------------------------~~~~g~T~d~~~~~~~~~~g~~i 239 (581)
+|+|+||+|+|||||+++|+... .+. ...+|+|++.....+.+ ++.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 58999999999999999996532 111 11378999998888877 78899
Q ss_pred EEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhhHHhhhhhccc
Q 008003 240 TFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQLGAEGL 318 (581)
Q Consensus 240 ~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~~~~~l~~~~~ 318 (581)
.|||||||++|...+..++..+|++|+|+|++++...++...+..+...+.| +|+|+||+|+...+.........+...
T Consensus 80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~ 159 (208)
T cd04166 80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLA 159 (208)
T ss_pred EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHH
Confidence 9999999999988888889999999999999998888877777766666655 788999999975433222221111111
Q ss_pred hhhhcC-CcceEEEEeccCCCChhhH
Q 008003 319 ELEDWG-GKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 319 ~~~~~~-~~~~ii~iSAktg~gI~eL 343 (581)
....++ ...+++++||++|.|+++.
T Consensus 160 ~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 160 FAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHcCCCCceEEEEeCCCCCCCccC
Confidence 122222 2357999999999999864
No 76
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.85 E-value=1.7e-20 Score=176.17 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=110.5
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
++|+++|++|+|||||+++|....+.....+.+..++.......+ ....+.+|||||++.|..++..+++.+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 479999999999999999999887766555544444444444442 3467889999999999999999999999999999
Q ss_pred eccCCCChhHHH-HHHHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHH
Q 008003 269 AADDGVMPQTLE-AIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (581)
Q Consensus 269 Da~~g~~~~~~~-~i~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~ 345 (581)
|++++...+... .+..+.. .+.|+++|+||+|+...... ..... ... ...+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~---~~~--~~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQ----KKFNF---AEK--HNLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHH----HHHHH---HHH--cCCeEEEEeCCCCCCHHHHHH
Confidence 998754433332 2233322 36899999999998432111 11111 011 135899999999999999999
Q ss_pred HHHHHH
Q 008003 346 ALLLQA 351 (581)
Q Consensus 346 ~L~~~~ 351 (581)
.+....
T Consensus 152 ~l~~~~ 157 (161)
T cd04124 152 DAIKLA 157 (161)
T ss_pred HHHHHH
Confidence 997643
No 77
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.2e-20 Score=193.01 Aligned_cols=253 Identities=24% Similarity=0.331 Sum_probs=188.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc--c--------------ccc------ccccCceeEeeeeEEEeecCCeEEEEEeC
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ--T--------------SLV------AKEAGGITQHMGAFVVGMSTGASITFLDT 244 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~--~--------------~~~------~~~~~g~T~d~~~~~~~~~~g~~i~liDT 244 (581)
.+....+|+-||++|||||...|+- . +.. .....||+.....-.+.+ +++.++|+||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDT 88 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDT 88 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCC
Confidence 3557899999999999999998832 0 111 123468888888888888 8999999999
Q ss_pred CCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cch----
Q 008003 245 PGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GLE---- 319 (581)
Q Consensus 245 pG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~~---- 319 (581)
|||++|+.-..+.+..+|.+|+|+|+..|+.+||+..+.-++..++|++-++||+|....++-++..++.+. ++.
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pi 168 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPI 168 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceecc
Confidence 999999999999999999999999999999999999999999999999999999999876654444333211 000
Q ss_pred -------------------------------------------------------------------------hh--hcC
Q 008003 320 -------------------------------------------------------------------------LE--DWG 324 (581)
Q Consensus 320 -------------------------------------------------------------------------~~--~~~ 324 (581)
.+ -.|
T Consensus 169 tWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G 248 (528)
T COG4108 169 TWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAG 248 (528)
T ss_pred cccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcC
Confidence 00 012
Q ss_pred CcceEEEEeccCCCChhhHHHHHHHHHHHhhccc-------ccCCCcceEEEEEE--ee-cCCCcEEEEEEeccEEeeCc
Q 008003 325 GKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-------RVDGPAQAYVVEAR--LD-KGRGPLTTAIVKAGTLVCGQ 394 (581)
Q Consensus 325 ~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~-------~~~~~~~~~V~e~~--~~-~~~G~v~~~~V~~GtLk~gd 394 (581)
.-.|+|+-||.++.|++.+++.+...+..+.... +.+..+.++|+... .+ +.+..++..+|.+|.+..|+
T Consensus 249 ~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGM 328 (528)
T COG4108 249 ELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGM 328 (528)
T ss_pred CccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCc
Confidence 2347999999999999999999998765443221 23455889998764 33 35788999999999999999
Q ss_pred EEEEccccceEE-----EEEcccCCcccccCCCCcEEEeccCCCCCCCCeEE
Q 008003 395 HVVVGHEWGRIR-----AIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDII 441 (581)
Q Consensus 395 ~i~~g~~~~kVk-----~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~ 441 (581)
.+........++ .......+.+.+|.||+.+-|..- |.-..||+|.
T Consensus 329 kv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nh-G~~~IGDT~t 379 (528)
T COG4108 329 KVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNH-GTIQIGDTFT 379 (528)
T ss_pred eeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCC-Cceeecceee
Confidence 987743322222 123445678999999987755321 2234677776
No 78
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=2.2e-20 Score=175.65 Aligned_cols=155 Identities=15% Similarity=0.249 Sum_probs=112.3
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
..+|+++|++|+|||||+++|....+.....+..+.++....+.+ ++ ..+.||||||++.|..++...++.+|++++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 478999999999999999999887776555555555555555655 44 578999999999999999999999999999
Q ss_pred EEeccCCCChh----HHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 267 VVAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 267 VvDa~~g~~~~----~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
|+|+++....+ +...+......++|+++|+||+|+........ ..... +....+...++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~----~~~~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLF-EEACT----LAEKNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCH-HHHHH----HHHHcCCcEEEEEECCCCCCHHH
Confidence 99999854322 23333333335789999999999964321111 11111 11111224689999999999999
Q ss_pred HHHHHHH
Q 008003 343 LEVALLL 349 (581)
Q Consensus 343 Ll~~L~~ 349 (581)
+++.|..
T Consensus 157 ~~~~l~~ 163 (165)
T cd01864 157 AFLLMAT 163 (165)
T ss_pred HHHHHHH
Confidence 9999875
No 79
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.1e-20 Score=177.20 Aligned_cols=155 Identities=19% Similarity=0.239 Sum_probs=125.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
..++|+++|+.|||||+|+.++....+..+...++..|+....+.++ ...++.+|||+|+++|..+...+++.|+++|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 35799999999999999999999999999999999999999999884 23679999999999999999999999999999
Q ss_pred EEeccCCC----ChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcce-EEEEeccCCC
Q 008003 267 VVAADDGV----MPQTLEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQ-VVEVSAVKKT 338 (581)
Q Consensus 267 VvDa~~g~----~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~-ii~iSAktg~ 338 (581)
|||.++.. ..+|+..+......++|.++|+||+|+.+.. .+.... +... .+.+ ++++||+++.
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~--------fa~~-~~~~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQE--------FADE-LGIPIFLETSAKDST 158 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHH--------HHHh-cCCcceeecccCCcc
Confidence 99999833 3455555555556788999999999996431 111111 1111 1234 9999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++.|..|....
T Consensus 159 NVe~~F~~la~~l 171 (205)
T KOG0084|consen 159 NVEDAFLTLAKEL 171 (205)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987644
No 80
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.84 E-value=2.9e-20 Score=174.02 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=112.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+...+.++++.++....+... ....+.||||||++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 479999999999999999999998877777777777665555542 3478899999999999999999999999999999
Q ss_pred eccCCCChh----HHHHHHHHhh-----cCCCEEEEEeCCCCCCC---ChhhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 269 AADDGVMPQ----TLEAIAHANA-----ANVPIVVAINKCDKPAA---DPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 269 Da~~g~~~~----~~~~i~~~~~-----~~~piIvViNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
|.++....+ +...+..... .+.|+++|+||+|+... +.+...... ... ..+++++||++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~ 151 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-------ESK--GFKYFETSACT 151 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-------HHc--CCeEEEEECCC
Confidence 998743222 2222222221 45789999999999631 111111111 111 25799999999
Q ss_pred CCChhhHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQ 350 (581)
Q Consensus 337 g~gI~eLl~~L~~~ 350 (581)
|.|+++++++|...
T Consensus 152 ~~gi~~l~~~l~~~ 165 (168)
T cd04119 152 GEGVNEMFQTLFSS 165 (168)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998763
No 81
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.84 E-value=3.8e-20 Score=174.32 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=110.1
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....++++.++....+..+ ....+.+|||||++.+..++...++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 589999999999999999999988766555655555544444332 2367999999999999999999999999999999
Q ss_pred eccCCCChh----HHHHHHHHhhcCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~~----~~~~i~~~~~~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|.++....+ |...+......+.|+++|+||+|+..... +...+ +. ..+ ..+++++||++|.|++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~------~~~--~~~~~~~Sa~~~~gv~ 152 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQ-LA------DQL--GFEFFEASAKENINVK 152 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHH-HH------HHc--CCEEEEEECCCCCCHH
Confidence 998743222 22222222224678999999999964321 11111 11 111 2479999999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
+|+++|...
T Consensus 153 ~l~~~l~~~ 161 (165)
T cd01865 153 QVFERLVDI 161 (165)
T ss_pred HHHHHHHHH
Confidence 999999764
No 82
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=3.9e-20 Score=180.43 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=114.0
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec--CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~--~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|++|+|||||+++|.+..+.....++++.++....+.++ ....+.||||||++.|..++..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 479999999999999999999988776667777767665555553 246789999999999999999999999999999
Q ss_pred EeccCCCChhHHH----HHHHH----hhcCCCEEEEEeCCCCCCC---ChhhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 268 VAADDGVMPQTLE----AIAHA----NAANVPIVVAINKCDKPAA---DPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 268 vDa~~g~~~~~~~----~i~~~----~~~~~piIvViNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
+|+++....+... .+... ...++|+++|+||+|+... ..++........ +..+++++||++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~e~Sak~ 152 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN--------GFIGWFETSAKE 152 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc--------CCceEEEEeCCC
Confidence 9998743322222 22111 1246899999999999631 122222211111 124799999999
Q ss_pred CCChhhHHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQA 351 (581)
Q Consensus 337 g~gI~eLl~~L~~~~ 351 (581)
|.|+++++++|....
T Consensus 153 ~~~v~e~f~~l~~~l 167 (201)
T cd04107 153 GINIEEAMRFLVKNI 167 (201)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998754
No 83
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.84 E-value=2.8e-20 Score=175.51 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=113.7
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
..+|+++|++|+|||||+++|.+..+.....++++.+.....+...+ ...+.+|||||++.+..++...++.+|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 37899999999999999999999888776666666666555555522 36789999999999999998999999999999
Q ss_pred EeccCCCChhH----HHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 268 VAADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 268 vDa~~g~~~~~----~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
+|++++...+. ...+......+.|+++|+||+|+.+..... .+..... ...+ ..+++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS-KEEGEAL---ADEY--GIKFLETSAKANINVEEA 156 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC-HHHHHHH---HHHc--CCEEEEEeCCCCCCHHHH
Confidence 99987433222 222222223468999999999996421111 1111111 1111 247999999999999999
Q ss_pred HHHHHHHH
Q 008003 344 EVALLLQA 351 (581)
Q Consensus 344 l~~L~~~~ 351 (581)
+++|....
T Consensus 157 ~~~i~~~~ 164 (167)
T cd01867 157 FFTLAKDI 164 (167)
T ss_pred HHHHHHHH
Confidence 99998653
No 84
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=5.7e-20 Score=183.33 Aligned_cols=235 Identities=25% Similarity=0.336 Sum_probs=177.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc---ccccccCceeEeeeeEEEeec-------------------C------CeEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVGMS-------------------T------GASI 239 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~---~~~~~~~g~T~d~~~~~~~~~-------------------~------g~~i 239 (581)
...+|.++||++||||||..+|.+-. ....-..|+|...++....+. . -..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 45799999999999999999998743 333334566665554332110 0 1368
Q ss_pred EEEeCCCcchhhHHHhhccccccEEEEEEeccCC-CChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhhHHhhhhhcc
Q 008003 240 TFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-VMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQLGAEG 317 (581)
Q Consensus 240 ~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g-~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~~~~~l~~~~ 317 (581)
.|+|.|||+-....+.+++.-.|.++||++++++ .++|+.+++..+.-.++. +|+|-||+||... ++..+...+..
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~--E~AlE~y~qIk 166 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR--ERALENYEQIK 166 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH--HHHHHHHHHHH
Confidence 9999999999999999999999999999999984 689999999888777765 9999999999743 33322222211
Q ss_pred -chhhhcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecC--------CCcEEEEEEecc
Q 008003 318 -LELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKG--------RGPLTTAIVKAG 388 (581)
Q Consensus 318 -~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~--------~G~v~~~~V~~G 388 (581)
+....+-.+.|++|+||..+.||+-|+++|... ++.+..+.+.++..+|..+|.... +|-++.|.+.+|
T Consensus 167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~--IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G 244 (415)
T COG5257 167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKY--IPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQG 244 (415)
T ss_pred HHhcccccCCCceeeehhhhccCHHHHHHHHHHh--CCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeee
Confidence 111223346799999999999999999999874 456677888899999999886543 566889999999
Q ss_pred EEeeCcEEEEcc-----c---------cceEEEEEcccCCcccccCCCCcEEE
Q 008003 389 TLVCGQHVVVGH-----E---------WGRIRAIRDMVGKSTDKARPAMPVEI 427 (581)
Q Consensus 389 tLk~gd~i~~g~-----~---------~~kVk~i~~~~g~~v~~a~~~~~v~i 427 (581)
.|+.||.|.+-+ . +.+|.+|. ..+..+++|.||--+.|
T Consensus 245 ~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~-ag~~~~~ea~PGGLvgv 296 (415)
T COG5257 245 VLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQ-AGGEDVEEARPGGLVGV 296 (415)
T ss_pred eEecCCeEEecCCeEeecCCceEEEEeeEEEEEEE-eCCeeeeeccCCceEEE
Confidence 999999998721 1 23566776 47889999999966655
No 85
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.84 E-value=4.6e-20 Score=172.35 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=112.0
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec---CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS---TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~---~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.+|+++|++|+|||||+++|.+..+.....++++.++....+.+. .+..+.||||||++.|...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 479999999999999999999987776666777777655555542 34689999999999999999999999999999
Q ss_pred EEeccCCCChhHHHHHHH-Hh--hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 267 VVAADDGVMPQTLEAIAH-AN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 267 VvDa~~g~~~~~~~~i~~-~~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
|+|+++....+....|.. +. ..++|+++|+||+|+....... ....... ...+ ..+++++||++|.|++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~l 154 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVIT-NEEAEAL---AKRL--QLPLFRTSVKDDFNVTEL 154 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCC-HHHHHHH---HHHc--CCeEEEEECCCCCCHHHH
Confidence 999987433333222221 11 2478999999999996422100 0111100 0111 248999999999999999
Q ss_pred HHHHHH
Q 008003 344 EVALLL 349 (581)
Q Consensus 344 l~~L~~ 349 (581)
+++|..
T Consensus 155 ~~~l~~ 160 (162)
T cd04106 155 FEYLAE 160 (162)
T ss_pred HHHHHH
Confidence 999864
No 86
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.84 E-value=2.3e-20 Score=173.70 Aligned_cols=152 Identities=23% Similarity=0.275 Sum_probs=106.3
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....+++. +.....+.++ ....+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcch-heEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 5899999999999999999998877655444333 3333334442 2355789999999999999999999999999999
Q ss_pred eccCCCChhHHH----HHHHH-hhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 269 AADDGVMPQTLE----AIAHA-NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 269 Da~~g~~~~~~~----~i~~~-~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
|.++....+... .+... ...+.|+++|+||+|+...... ........ ... ..+++++||++|.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~---~~~--~~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVS--SRQGQDLA---KSY--GIPYIETSAKTRQGVEEA 153 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceec--HHHHHHHH---HHh--CCeEEEecCCCCCCHHHH
Confidence 998743222221 11111 2347899999999999642111 11111110 111 247999999999999999
Q ss_pred HHHHHH
Q 008003 344 EVALLL 349 (581)
Q Consensus 344 l~~L~~ 349 (581)
+++|..
T Consensus 154 ~~~l~~ 159 (162)
T cd04138 154 FYTLVR 159 (162)
T ss_pred HHHHHH
Confidence 999875
No 87
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.84 E-value=3.5e-20 Score=178.23 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=111.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|..|+|||||+++|....+...+.+++..++....+.. ++ ..+.+|||+|++.|..++..+++.||++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 47999999999999999999998887666776666665555665 34 6789999999999999999999999999999
Q ss_pred EeccCCCChh----HHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 268 VAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 268 vDa~~g~~~~----~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
+|+++....+ |.+.+........| |+|+||+|+.............+....+.... ..+++++||++|.|++++
T Consensus 80 ~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 80 FDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAM-KAPLIFCSTSHSINVQKI 157 (182)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHc-CCEEEEEeCCCCCCHHHH
Confidence 9998843322 22222222223456 67899999953211000001111111111111 258999999999999999
Q ss_pred HHHHHHHH
Q 008003 344 EVALLLQA 351 (581)
Q Consensus 344 l~~L~~~~ 351 (581)
+++|....
T Consensus 158 f~~l~~~l 165 (182)
T cd04128 158 FKIVLAKA 165 (182)
T ss_pred HHHHHHHH
Confidence 99998654
No 88
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=3.2e-20 Score=171.75 Aligned_cols=146 Identities=21% Similarity=0.320 Sum_probs=113.7
Q ss_pred EEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH--------HHhhccccccE
Q 008003 193 TVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA--------MRKRGAAVTDI 263 (581)
Q Consensus 193 ~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~--------~~~~~~~~aDi 263 (581)
+++|++|+|||||+|+|.+... ..+..+++|++........ ++..+.+|||||+..+.. .....+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 5899999999999999998753 3455678888887777776 788999999999887544 33456788999
Q ss_pred EEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 264 VVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 264 vllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
+++|+|+.++........+..+...+.|+++|+||+|+...... ...+.. . +..+++++||++|.|++++
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~-------~-~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--AAEFYS-------L-GFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--HHHHHh-------c-CCCCeEEEecccCCCHHHH
Confidence 99999998877666666677777778999999999999754322 111111 1 1126899999999999999
Q ss_pred HHHHHH
Q 008003 344 EVALLL 349 (581)
Q Consensus 344 l~~L~~ 349 (581)
+++|..
T Consensus 150 ~~~l~~ 155 (157)
T cd01894 150 LDAILE 155 (157)
T ss_pred HHHHHh
Confidence 999875
No 89
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.84 E-value=2.9e-20 Score=176.27 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=109.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
++..+|+++|++|+|||||+++|....+. ...++++.+.. .+.. .+..+.+|||||++.+..++..+++.+|++|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34689999999999999999999876553 23444444432 3334 67899999999999999999999999999999
Q ss_pred EEeccCCCC-hhHHHHHHHHh----hcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~-~~~~~~i~~~~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|+++... ......+.... ..++|+++|+||+|+... ..+++...+..... .....+++++||++|.|+
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~SAk~g~gv 158 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRI----RDRNWYVQPSCATSGDGL 158 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCcc----CCCcEEEEEeeCCCCCCh
Confidence 999987432 22223332221 246899999999999643 22333222211000 112247899999999999
Q ss_pred hhHHHHHHH
Q 008003 341 DDLEVALLL 349 (581)
Q Consensus 341 ~eLl~~L~~ 349 (581)
++++++|..
T Consensus 159 ~~~~~~l~~ 167 (168)
T cd04149 159 YEGLTWLSS 167 (168)
T ss_pred HHHHHHHhc
Confidence 999999853
No 90
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.84 E-value=3.4e-20 Score=174.42 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=113.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....++++.++....+... ....+.+|||||++.+..++..+++.+|++++|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 589999999999999999999888766666777766666666552 2357899999999999999999999999999999
Q ss_pred eccCCCChh----HHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 269 AADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 269 Da~~g~~~~----~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
|+++..... +...+......+.|+++|+||+|+........ ....... .. ..++++++||++|.|+++++
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~-~~~~~~~---~~--~~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDY-SEAQEFA---DE--LGIPFLETSAKNATNVEQAF 156 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCH-HHHHHHH---HH--cCCeEEEEECCCCcCHHHHH
Confidence 998733222 22222222224689999999999864321100 1111110 11 13589999999999999999
Q ss_pred HHHHHHH
Q 008003 345 VALLLQA 351 (581)
Q Consensus 345 ~~L~~~~ 351 (581)
+.|....
T Consensus 157 ~~i~~~~ 163 (166)
T cd01869 157 MTMAREI 163 (166)
T ss_pred HHHHHHH
Confidence 9997643
No 91
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.84 E-value=5e-20 Score=173.32 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=105.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh---------HHHhhcccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS---------AMRKRGAAV 260 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~---------~~~~~~~~~ 260 (581)
|+|+++|++|+|||||+|+|.+..+.....+++|.+.....+.. ++..++||||||+.+.. .........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 58999999999999999999998776555677787776666665 67899999999974211 011111234
Q ss_pred ccEEEEEEeccCCCC---hhHHHHHHHHhhc--CCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEecc
Q 008003 261 TDIVVLVVAADDGVM---PQTLEAIAHANAA--NVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (581)
Q Consensus 261 aDivllVvDa~~g~~---~~~~~~i~~~~~~--~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAk 335 (581)
+|++++|+|+++... ......+..+... +.|+++|+||+|+..... ... .... ... ...+++++||+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~--~~~-~~~~----~~~-~~~~~~~~Sa~ 151 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFED--LSE-IEEE----EEL-EGEEVLKISTL 151 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhh--HHH-HHHh----hhh-ccCceEEEEec
Confidence 689999999987432 2223344444433 789999999999964321 111 1111 111 23579999999
Q ss_pred CCCChhhHHHHHHHH
Q 008003 336 KKTGLDDLEVALLLQ 350 (581)
Q Consensus 336 tg~gI~eLl~~L~~~ 350 (581)
+|.|+++++++|...
T Consensus 152 ~~~gi~~l~~~l~~~ 166 (168)
T cd01897 152 TEEGVDEVKNKACEL 166 (168)
T ss_pred ccCCHHHHHHHHHHH
Confidence 999999999998763
No 92
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=3.8e-20 Score=203.27 Aligned_cols=162 Identities=23% Similarity=0.330 Sum_probs=125.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc----------chhhHHH-h
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH----------AAFSAMR-K 255 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~----------~~~~~~~-~ 255 (581)
..++|+++|+||+|||||+|+|++... ..+..+|+|+|.....+.+ ++..+.||||||. +.|..++ .
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-CCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 568999999999999999999998764 5678899999998888877 7889999999995 3333333 2
Q ss_pred hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChh-hHHhhhhhccchhhhcCCcceEEEEec
Q 008003 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE-RVKNQLGAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~ii~iSA 334 (581)
.+++.||++++|+|++++...++...+..+...++|+|+|+||+|+...... .....+.. .+.. ....+++++||
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~---~l~~-~~~~~~~~~SA 364 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDR---ELAQ-VPWAPRVNISA 364 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHH---hccc-CCCCCEEEEEC
Confidence 4678999999999999999888888888887789999999999999643211 11111111 1111 12358999999
Q ss_pred cCCCChhhHHHHHHHHHHHh
Q 008003 335 VKKTGLDDLEVALLLQAEMM 354 (581)
Q Consensus 335 ktg~gI~eLl~~L~~~~~~~ 354 (581)
++|.|++++++.+....+..
T Consensus 365 k~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 365 KTGRAVDKLVPALETALESW 384 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999998765533
No 93
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.84 E-value=5.2e-20 Score=175.90 Aligned_cols=159 Identities=36% Similarity=0.473 Sum_probs=120.4
Q ss_pred EEEEEccCCCCcchHhhhhhccccccc----------------ccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHH
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAK----------------EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR 254 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~----------------~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~ 254 (581)
+|+++|.+|+|||||+|+|.+...... ...++|.+.....+.. .+..+.||||||+.++...+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~ 79 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDFSSEV 79 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHHHHHH
Confidence 489999999999999999987654322 2345676766666666 67899999999999999888
Q ss_pred hhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhh---------hcC
Q 008003 255 KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELE---------DWG 324 (581)
Q Consensus 255 ~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~---------~~~ 324 (581)
..++..+|++++|+|++++...+..+.+..+...+.|+++|+||+|+... ........+.+.-.... ...
T Consensus 80 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (189)
T cd00881 80 IRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNG 159 (189)
T ss_pred HHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccC
Confidence 88999999999999999888777777777777778999999999999752 22222222211110000 011
Q ss_pred CcceEEEEeccCCCChhhHHHHHHHH
Q 008003 325 GKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 325 ~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
...+++++||++|.|+++++++|...
T Consensus 160 ~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 160 LLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred CcceEEEEecccCcCHHHHHHHHHhh
Confidence 35689999999999999999999764
No 94
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.84 E-value=4.8e-20 Score=173.65 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=110.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....+.+..++....+... ....+.+|||||++.|...+..+++.+|++|+|+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999888766555555555544444442 2357899999999999999999999999999999
Q ss_pred eccCCCChhHHHHH----HHHhhcCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMPQTLEAI----AHANAANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~~~~~~i----~~~~~~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|+++....+....| ......+.|+++|+||+|+..... +...... .. ...+++++||++|.|++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~-------~~--~~~~~~e~Sa~~~~~i~ 153 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA-------DE--NGLLFLECSAKTGENVE 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHH-------HH--cCCEEEEEECCCCCCHH
Confidence 99984433222222 222234678999999999964321 1111111 11 13589999999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
+++..+...
T Consensus 154 e~f~~l~~~ 162 (166)
T cd04122 154 DAFLETAKK 162 (166)
T ss_pred HHHHHHHHH
Confidence 999988753
No 95
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.84 E-value=5.2e-20 Score=171.79 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=114.9
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC-eEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG-ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g-~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....++++.++....+..++. ..+.+|||||++.+..++...++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 37999999999999999999999888778888888888877776322 56899999999999999999999999999999
Q ss_pred eccCCCChhHHH-HHHHHh-h--cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 269 AADDGVMPQTLE-AIAHAN-A--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 269 Da~~g~~~~~~~-~i~~~~-~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
|++++...+... .+..+. . .+.|+++++||+|+....... ....... ... ...+++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~-~~~~~~~---~~~--~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVS-TEEGEKK---AKE--LNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccC-HHHHHHH---HHH--hCCEEEEEeCCCCCCHHHHH
Confidence 998754332222 222221 2 258999999999995321111 1111111 011 12579999999999999999
Q ss_pred HHHHH
Q 008003 345 VALLL 349 (581)
Q Consensus 345 ~~L~~ 349 (581)
++|..
T Consensus 155 ~~i~~ 159 (161)
T cd01861 155 RKIAS 159 (161)
T ss_pred HHHHH
Confidence 99875
No 96
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.83 E-value=3e-20 Score=174.69 Aligned_cols=156 Identities=21% Similarity=0.254 Sum_probs=106.6
Q ss_pred EEEEEccCCCCcchHhhhhhccccc----ccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLV----AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~----~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+|+++|++|+|||||+++|.+.... .......|.......+.+ ++..+.+|||||++.+..++...+..+|++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~ 79 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESLRSLWDKYYAECHAIIY 79 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 5899999999999999999764321 111122344444445555 68999999999999999999999999999999
Q ss_pred EEeccCCCCh-hHHHHHHHH----hhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMP-QTLEAIAHA----NAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~-~~~~~i~~~----~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|+++.... .....+..+ ...++|+++++||+|+..... ......+....... ....++++++||++|.|+
T Consensus 80 vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~g~gv 157 (167)
T cd04160 80 VIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEI--GRRDCLVLPVSALEGTGV 157 (167)
T ss_pred EEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccc--cCCceEEEEeeCCCCcCH
Confidence 9999874211 112222222 124789999999999965321 22222222111000 112458999999999999
Q ss_pred hhHHHHHHH
Q 008003 341 DDLEVALLL 349 (581)
Q Consensus 341 ~eLl~~L~~ 349 (581)
++++++|..
T Consensus 158 ~e~~~~l~~ 166 (167)
T cd04160 158 REGIEWLVE 166 (167)
T ss_pred HHHHHHHhc
Confidence 999999864
No 97
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.83 E-value=4e-20 Score=175.66 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=108.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.+.++|+++|++|+|||||+++|.+..+. ...+++ .+....+.. ++..+.+|||||++.+..++..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~--g~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTL--GFQIKTLEY-EGYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcc--ccceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 45689999999999999999999987442 222222 233344555 57899999999999999898899999999999
Q ss_pred EEeccCCCCh-hHHHHHHHH----hhcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMP-QTLEAIAHA----NAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~-~~~~~i~~~----~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|+++.... .....+..+ ...+.|+++|+||+|+.... .+.....+.... .....++++++||++|.|+
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDK----ISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccc----cCCCceEEEeccCCCCcCH
Confidence 9999875221 111222221 22578999999999996432 222222221110 0113458999999999999
Q ss_pred hhHHHHHH
Q 008003 341 DDLEVALL 348 (581)
Q Consensus 341 ~eLl~~L~ 348 (581)
++++++|.
T Consensus 164 ~~l~~~l~ 171 (173)
T cd04154 164 LQGIDWLV 171 (173)
T ss_pred HHHHHHHh
Confidence 99999985
No 98
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.83 E-value=1.2e-19 Score=175.60 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=114.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
...+|+++|..|+|||||+.+|....+.....++++.++....+.. ++ ..+.||||||++.|..++..+++.+|++|
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3479999999999999999999988776655566677766565655 44 67899999999999999999999999999
Q ss_pred EEEeccCCCChhHHHHH-HHHh--hcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 266 LVVAADDGVMPQTLEAI-AHAN--AANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~i-~~~~--~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
+|||+++....+....| ..+. ..+.|+|+|+||+|+.... .++..... ... ..++++|||++|.|
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a-------~~~--~~~~~e~SAk~g~~ 154 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYA-------ERN--GMTFFEVSPLCNFN 154 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHH-------HHc--CCEEEEecCCCCCC
Confidence 99999984433322221 2222 2478999999999995321 11111111 111 35799999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
|+++|++|....
T Consensus 155 V~~~F~~l~~~i 166 (189)
T cd04121 155 ITESFTELARIV 166 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999998644
No 99
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.83 E-value=5.3e-20 Score=172.13 Aligned_cols=153 Identities=22% Similarity=0.211 Sum_probs=106.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|++|+|||||++++.+..+.....+.+ .+.......+ ++ ..+.+|||||++++..++..+++.+|++++|
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI-EDSYTKQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc-cceEEEEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 689999999999999999999877654444433 3333333444 33 5788999999999999999999999999999
Q ss_pred EeccCCCChhH----HHHHHH-HhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 268 VAADDGVMPQT----LEAIAH-ANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 268 vDa~~g~~~~~----~~~i~~-~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
+|+++....+. ...+.. ....+.|+++|+||+|+........ ...... .... ..+++++||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSR-EEGQEL---ARKL--KIPYIETSAKDRLNVDK 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecH-HHHHHH---HHHc--CCcEEEeeCCCCCCHHH
Confidence 99987432222 122222 1234789999999999964321110 011111 1111 24799999999999999
Q ss_pred HHHHHHHH
Q 008003 343 LEVALLLQ 350 (581)
Q Consensus 343 Ll~~L~~~ 350 (581)
++++|...
T Consensus 155 l~~~l~~~ 162 (164)
T cd04145 155 AFHDLVRV 162 (164)
T ss_pred HHHHHHHh
Confidence 99999754
No 100
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.83 E-value=5.1e-20 Score=171.88 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=104.7
Q ss_pred EEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEe
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvD 269 (581)
+|+++|++|+|||||+++|.+... .....+++..+ ...+.. .+..+.+|||||++.+..++..+++.+|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~--~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN--VESFEK-GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccc--eEEEEE-CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 489999999999999999998653 22233333222 223334 67899999999999999999999999999999999
Q ss_pred ccCCCChh-HHHHHHHH------hhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 270 ADDGVMPQ-TLEAIAHA------NAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 270 a~~g~~~~-~~~~i~~~------~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
++++.... ....+..+ ...++|+++|+||+|+.+... ......+..... .....+++++||++|.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~----~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 78 SSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENI----KDKPWHIFASNALTGEGLD 153 (162)
T ss_pred CCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccc----cCceEEEEEeeCCCCCchH
Confidence 98753221 11112211 124789999999999965422 222222111000 1123468999999999999
Q ss_pred hHHHHHHH
Q 008003 342 DLEVALLL 349 (581)
Q Consensus 342 eLl~~L~~ 349 (581)
+++++|..
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 101
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.83 E-value=5.9e-20 Score=173.66 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=110.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|||||||++++....+.....+++..++....+... ....+.+|||||++.+..++...+..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 479999999999999999998777655555555555544444432 3468899999999999888888899999999999
Q ss_pred eccCCCChhHHHHH-HHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHH
Q 008003 269 AADDGVMPQTLEAI-AHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (581)
Q Consensus 269 Da~~g~~~~~~~~i-~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~ 345 (581)
|++++...+....+ ..+.. .++|+++|+||+|+...........+ .. ....+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~-------~~-~~~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITF-------HR-KKNLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHH-------HH-HcCCEEEEEeCCCCCChHHHHH
Confidence 99975433332222 22211 27999999999999632211111111 11 1245799999999999999999
Q ss_pred HHHHHH
Q 008003 346 ALLLQA 351 (581)
Q Consensus 346 ~L~~~~ 351 (581)
+|....
T Consensus 153 ~l~~~~ 158 (166)
T cd00877 153 WLARKL 158 (166)
T ss_pred HHHHHH
Confidence 998654
No 102
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.83 E-value=6.3e-20 Score=172.26 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=113.0
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|.+|+|||||+++|.+..+.....++++.++....+.. ++ ..+.+|||||++.+..++..+++.+|++++|
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 68999999999999999999998877666777777776666666 34 5789999999999999999999999999999
Q ss_pred EeccCCCChhH----HHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 268 VAADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 268 vDa~~g~~~~~----~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
+|+++....+. ...+......+.|+++|+||+|+....... .+...... .. ...+++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~-~~~~~~~~---~~--~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP-TEEAKAFA---EK--NGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC-HHHHHHHH---HH--cCCEEEEEECCCCCCHHHH
Confidence 99986332222 222222222368999999999996432111 11111110 11 1357999999999999999
Q ss_pred HHHHHHH
Q 008003 344 EVALLLQ 350 (581)
Q Consensus 344 l~~L~~~ 350 (581)
+++|...
T Consensus 157 ~~~l~~~ 163 (165)
T cd01868 157 FKQLLTE 163 (165)
T ss_pred HHHHHHH
Confidence 9998753
No 103
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=3.1e-20 Score=183.80 Aligned_cols=151 Identities=28% Similarity=0.332 Sum_probs=112.8
Q ss_pred EEEEEccCCCCcchHhhhhhccc-------------------------------ccccccCceeEeeeeEEEeecCCeEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTS-------------------------------LVAKEAGGITQHMGAFVVGMSTGASI 239 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~-------------------------------~~~~~~~g~T~d~~~~~~~~~~g~~i 239 (581)
+|+++||+|+|||||+++|+... ......+|+|++.....+.+ ++..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 58999999999999999995310 01122469999999999988 89999
Q ss_pred EEEeCCCcchhhHHHhhccccccEEEEEEeccC-------CCChhHHHHHHHHhhcC-CCEEEEEeCCCCCCC--ChhhH
Q 008003 240 TFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD-------GVMPQTLEAIAHANAAN-VPIVVAINKCDKPAA--DPERV 309 (581)
Q Consensus 240 ~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~-------g~~~~~~~~i~~~~~~~-~piIvViNK~Dl~~~--~~~~~ 309 (581)
+|||||||.+|...+..++..+|++|+|+|+++ +...++.+.+..+...+ .|+|+|+||+|+... +....
T Consensus 80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence 999999999999888888999999999999998 45567777777666666 579999999999732 22222
Q ss_pred HhhhhhccchhhhcC---CcceEEEEeccCCCChhh
Q 008003 310 KNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 310 ~~~l~~~~~~~~~~~---~~~~ii~iSAktg~gI~e 342 (581)
..........+..++ ..++++++||++|.|+++
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 222222111122222 247899999999999973
No 104
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.83 E-value=3.9e-20 Score=178.68 Aligned_cols=162 Identities=22% Similarity=0.255 Sum_probs=112.2
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....+++..++. ..+..+ ....+.||||||++.|..++..++..+|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 47999999999999999999998876655555544433 223332 2367999999999999999888999999999999
Q ss_pred eccCCCChhHHH--HHHHHh--hcCCCEEEEEeCCCCCCCChhh-HHhh------hhhccchhhhcCCcceEEEEeccCC
Q 008003 269 AADDGVMPQTLE--AIAHAN--AANVPIVVAINKCDKPAADPER-VKNQ------LGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 269 Da~~g~~~~~~~--~i~~~~--~~~~piIvViNK~Dl~~~~~~~-~~~~------l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
|+++....+..+ .+..+. ..+.|+++|+||+|+....... .... ..+.+..+....+.++++++||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999854333221 222222 2478999999999996432111 0000 0111111222223468999999999
Q ss_pred CChhhHHHHHHHHHH
Q 008003 338 TGLDDLEVALLLQAE 352 (581)
Q Consensus 338 ~gI~eLl~~L~~~~~ 352 (581)
.|++++|++|...+-
T Consensus 160 ~~v~e~f~~l~~~~~ 174 (189)
T cd04134 160 RGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987553
No 105
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=5.3e-20 Score=199.97 Aligned_cols=160 Identities=24% Similarity=0.341 Sum_probs=125.6
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH----------HH-h
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA----------MR-K 255 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~----------~~-~ 255 (581)
..++|+++|++|+|||||+|+|.+.. ...++.+|+|++.....+.. ++..+.+|||||+..+.. .+ .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 45799999999999999999999865 45678899999988888877 778999999999754321 11 3
Q ss_pred hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChh---hHHhhhhhccchhhhcCCcceEEEE
Q 008003 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE---RVKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~---~~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
.+++.+|++|+|+|++++...++...+..+...++|+|+|+||+|+.. +.. .+...+... +. .....+++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~---~~-~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK-DEKTREEFKKELRRK---LP-FLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC-CHHHHHHHHHHHHHh---cc-cCCCCceEEE
Confidence 467899999999999999999999888888888999999999999972 222 222222211 11 1134689999
Q ss_pred eccCCCChhhHHHHHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLLQAEM 353 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~~~~~ 353 (581)
||++|.|++++++++....+.
T Consensus 325 SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876543
No 106
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.83 E-value=3.8e-19 Score=207.03 Aligned_cols=303 Identities=20% Similarity=0.243 Sum_probs=196.6
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc----------------cccccCceeEeeeeEEEeec---------------CC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL----------------VAKEAGGITQHMGAFVVGMS---------------TG 236 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~----------------~~~~~~g~T~d~~~~~~~~~---------------~g 236 (581)
+-++|+|+||+|+|||||+++|+...- ......|+|.+.....+.+. ++
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 457899999999999999999965321 11123466666554444441 26
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCC-----------CC
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA-----------AD 305 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~-----------~~ 305 (581)
+.++|+|||||.+|...+..+++.+|++|+|+|+.+|+..++..+|.++...++|+|+++||+|+.. .+
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~~~ 177 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999972 12
Q ss_pred hhhHHhhhh--------hc-cc-hhhhcCCcceEEEEeccCC--------------------------------------
Q 008003 306 PERVKNQLG--------AE-GL-ELEDWGGKVQVVEVSAVKK-------------------------------------- 337 (581)
Q Consensus 306 ~~~~~~~l~--------~~-~~-~~~~~~~~~~ii~iSAktg-------------------------------------- 337 (581)
..++.+.+. .. +. .+.+.++ .+++.|+..|
T Consensus 178 ~~~vi~~in~~~~~~~~~~~~~~~~~P~~~--nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~ 255 (843)
T PLN00116 178 FSRVIENANVIMATYEDPLLGDVQVYPEKG--TVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (843)
T ss_pred HHHHHHHHHHHHHhccccccCceEEccCCC--eeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCc
Confidence 233333332 00 00 0000000 1122222111
Q ss_pred ---------CC-----h-------hhHHHHHH--------HHHH------------------------------------
Q 008003 338 ---------TG-----L-------DDLEVALL--------LQAE------------------------------------ 352 (581)
Q Consensus 338 ---------~g-----I-------~eLl~~L~--------~~~~------------------------------------ 352 (581)
.+ + .+|++.+. ...+
T Consensus 256 ~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld~ 335 (843)
T PLN00116 256 KWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEM 335 (843)
T ss_pred eEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHHH
Confidence 00 0 00111110 0000
Q ss_pred ----Hhhcc-------------------------cccCCCcceEEEEEEeecCCCc-EEEEEEeccEEeeCcEEEE-ccc
Q 008003 353 ----MMNLK-------------------------ARVDGPAQAYVVEARLDKGRGP-LTTAIVKAGTLVCGQHVVV-GHE 401 (581)
Q Consensus 353 ----~~~~~-------------------------~~~~~~~~~~V~e~~~~~~~G~-v~~~~V~~GtLk~gd~i~~-g~~ 401 (581)
.+.+. .+++.|+.++|+....++..|. ++.++|.+|+|+.|+.|++ |+.
T Consensus 336 i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n 415 (843)
T PLN00116 336 IIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPN 415 (843)
T ss_pred HHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCC
Confidence 00000 0123467788888776776777 8999999999999999964 321
Q ss_pred -------------cceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008003 402 -------------WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKI 468 (581)
Q Consensus 402 -------------~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~ 468 (581)
-+++..+.+.....++++.+|+.+.|.|+.+....|++++...+. ...
T Consensus 416 ~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~-~~~------------------ 476 (843)
T PLN00116 416 YVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEV-DAH------------------ 476 (843)
T ss_pred CCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCccc-CCc------------------
Confidence 123455566667889999999999999998764558888632200 000
Q ss_pred hhhhccCCCCCCCC-CCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeE
Q 008003 469 NEERTENLEPSEDV-PKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV 519 (581)
Q Consensus 469 ~~~~~~~~~~~~~~-~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i 519 (581)
.+. ... +..+.+.+.|.+...+..+.+.++|.++..+...+.+
T Consensus 477 ------~l~--~~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v 520 (843)
T PLN00116 477 ------PIK--AMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQC 520 (843)
T ss_pred ------ccc--ccccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEE
Confidence 000 000 1145677889999999999999999988876544443
No 107
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.83 E-value=6.6e-20 Score=171.41 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=113.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....++.+.++....+.+++ ...+.||||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 4799999999999999999999887766666666666655555532 367899999999999999999999999999999
Q ss_pred eccCCCChh----HHHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~~----~~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|++++...+ +...+......++|+++|+||+|+.... .+....... .. ..+++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~~~i~ 151 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQ-------EN--GLLFLETSALTGENVE 151 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHH-------Hc--CCEEEEEECCCCCCHH
Confidence 999854332 2233333444678999999999996421 111111111 11 2589999999999999
Q ss_pred hHHHHHHH
Q 008003 342 DLEVALLL 349 (581)
Q Consensus 342 eLl~~L~~ 349 (581)
++++++..
T Consensus 152 ~~~~~~~~ 159 (161)
T cd04113 152 EAFLKCAR 159 (161)
T ss_pred HHHHHHHH
Confidence 99999875
No 108
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.83 E-value=8.6e-20 Score=173.99 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=112.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-----------CCeEEEEEeCCCcchhhHHHhhc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-----------TGASITFLDTPGHAAFSAMRKRG 257 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-----------~g~~i~liDTpG~~~~~~~~~~~ 257 (581)
-++|+++|++|+|||||+++|.+..+.....++++.++....+.+. ....+.||||||++.|..++..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 3789999999999999999999988776666666666655544432 23678999999999999999999
Q ss_pred cccccEEEEEEeccCCCChhHHHHH-HHHh----hcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceE
Q 008003 258 AAVTDIVVLVVAADDGVMPQTLEAI-AHAN----AANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQV 329 (581)
Q Consensus 258 ~~~aDivllVvDa~~g~~~~~~~~i-~~~~----~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~i 329 (581)
++.+|++++|+|+++....+....| ..+. ..+.|+++|+||+|+.... .++... +. ..+ .+++
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~-~~------~~~--~~~~ 154 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA-LA------DKY--GIPY 154 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHH-HH------HHc--CCeE
Confidence 9999999999999874332222211 1222 2367899999999996421 111111 11 111 2479
Q ss_pred EEEeccCCCChhhHHHHHHHH
Q 008003 330 VEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 330 i~iSAktg~gI~eLl~~L~~~ 350 (581)
+++||++|.|+++++++|...
T Consensus 155 ~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 155 FETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred EEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999999763
No 109
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.83 E-value=3e-20 Score=173.59 Aligned_cols=153 Identities=25% Similarity=0.256 Sum_probs=107.0
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||++++....+.....+++ .+.....+..+ ....+.||||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCch-hhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 589999999999999999999887665444433 34334444442 2356789999999999999999999999999999
Q ss_pred eccCCCChhHH-HHHHHHh----hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 269 AADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 269 Da~~g~~~~~~-~~i~~~~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
|+++....+.. ..+..+. ..++|+++|+||+|+....... ....... ...+ ..+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVS-REEGQAL---ARQW--GCPFYETSAKSKINVDEV 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceec-HHHHHHH---HHHc--CCeEEEecCCCCCCHHHH
Confidence 99874322222 1122221 2468999999999996421110 1111111 1122 258999999999999999
Q ss_pred HHHHHH
Q 008003 344 EVALLL 349 (581)
Q Consensus 344 l~~L~~ 349 (581)
+++|..
T Consensus 155 ~~~l~~ 160 (163)
T cd04136 155 FADLVR 160 (163)
T ss_pred HHHHHH
Confidence 999875
No 110
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.83 E-value=1.2e-19 Score=171.55 Aligned_cols=153 Identities=17% Similarity=0.195 Sum_probs=111.3
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....+.++.+.....+... ....+.+|||||++.|..++..+++.+|++++|+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999987766555555555555555542 2357899999999999999999999999999999
Q ss_pred eccCCCChhHHHHH-HHH---hhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMPQTLEAI-AHA---NAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~~~~~~i-~~~---~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|+++....+....| ..+ ...+.|+++|+||+|+.... .+....... .. ..+++++||++|.|++
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~e~Sa~~~~~i~ 155 (168)
T cd01866 85 DITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAK-------EH--GLIFMETSAKTASNVE 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHH-------Hc--CCEEEEEeCCCCCCHH
Confidence 99874333322222 222 22478999999999996321 122111111 11 3479999999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
++++++....
T Consensus 156 ~~~~~~~~~~ 165 (168)
T cd01866 156 EAFINTAKEI 165 (168)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 111
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.83 E-value=3.7e-20 Score=176.78 Aligned_cols=157 Identities=18% Similarity=0.235 Sum_probs=111.2
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|.+|+|||||+++|....+...+.|++..++. ..+.. ++ +.+.||||||++.|..++..+++.+|++|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 58999999999999999999998887666676655443 23444 34 6788999999999999998899999999999
Q ss_pred EeccCCCChhHHH-HH-HHHh--hcCCCEEEEEeCCCCCCCChhhHHhhhh---------hccchhhhcCCcceEEEEec
Q 008003 268 VAADDGVMPQTLE-AI-AHAN--AANVPIVVAINKCDKPAADPERVKNQLG---------AEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 268 vDa~~g~~~~~~~-~i-~~~~--~~~~piIvViNK~Dl~~~~~~~~~~~l~---------~~~~~~~~~~~~~~ii~iSA 334 (581)
+|+++....+... .| ..+. ..++|+|+|+||+|+.+... ..+.+. +.+..+....+..+++++||
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~--~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 157 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS--TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChh--hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 9998854333221 12 2222 24689999999999854311 111110 00111111123358999999
Q ss_pred cCCCChhhHHHHHHHH
Q 008003 335 VKKTGLDDLEVALLLQ 350 (581)
Q Consensus 335 ktg~gI~eLl~~L~~~ 350 (581)
++|.|++++++.+...
T Consensus 158 ~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 158 LTQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999998764
No 112
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=7.4e-20 Score=200.97 Aligned_cols=153 Identities=24% Similarity=0.328 Sum_probs=120.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcch--------hhHHHhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA--------FSAMRKRGA 258 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~--------~~~~~~~~~ 258 (581)
..++|+|+|+||||||||+|+|.+... .....+|+|++.....+.+ ++..+.||||||++. +......++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 458999999999999999999998764 4677889999998888877 788999999999762 334455678
Q ss_pred ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 259 ~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
..||++|+|+|++++........+..+...++|+++|+||+|+.....+. ......+ .. ..++|||++|.
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~--~~~~~~g-------~~-~~~~iSA~~g~ 185 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADA--AALWSLG-------LG-EPHPVSALHGR 185 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhh--HHHHhcC-------CC-CeEEEEcCCCC
Confidence 89999999999999877766677777777889999999999996432111 1111111 11 34799999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++|+++|....
T Consensus 186 gi~eL~~~i~~~l 198 (472)
T PRK03003 186 GVGDLLDAVLAAL 198 (472)
T ss_pred CcHHHHHHHHhhc
Confidence 9999999998654
No 113
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.83 E-value=6.9e-20 Score=171.97 Aligned_cols=151 Identities=21% Similarity=0.194 Sum_probs=105.9
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEe
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvD 269 (581)
.+|+++|.+|+|||||+++|....+. ...|++..++ ..+.. ....+.||||||++.+..++..+++.+|++|+|+|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 37999999999999999999776664 3444443333 33444 67899999999999999999999999999999999
Q ss_pred ccCCCC-hhHHHHHHHHh----hcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 270 ADDGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 270 a~~g~~-~~~~~~i~~~~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
+++... .+..+.+..+. ..+.|+++++||+|+.+... .+....+ +... .......++++||++|.|++++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~---~~~~-~~~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKL---GLHS-LRNRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHh---Cccc-cCCCCEEEEEeeCCCCCCHHHH
Confidence 987321 22223232221 13589999999999964321 2222222 1110 0112346789999999999999
Q ss_pred HHHHH
Q 008003 344 EVALL 348 (581)
Q Consensus 344 l~~L~ 348 (581)
+++|.
T Consensus 153 ~~~l~ 157 (159)
T cd04150 153 LDWLS 157 (159)
T ss_pred HHHHh
Confidence 99985
No 114
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.83 E-value=9e-20 Score=171.20 Aligned_cols=154 Identities=23% Similarity=0.250 Sum_probs=107.2
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|.+|+|||||++++....+.....+++ .+.....+... ....+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc-hheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 589999999999999999999876655444433 33333444442 2456789999999999999999999999999999
Q ss_pred eccCCCChhHH-HHHHHH----hhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 269 AADDGVMPQTL-EAIAHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 269 Da~~g~~~~~~-~~i~~~----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
|.++....+.. +.+..+ ...+.|+++|+||+|+........ ...... ...+ ..+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK-EQGQNL---ARQW--GCAFLETSAKAKINVNEI 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH-HHHHHH---HHHh--CCEEEEeeCCCCCCHHHH
Confidence 99864322221 112222 235689999999999964311100 011111 0111 248999999999999999
Q ss_pred HHHHHHH
Q 008003 344 EVALLLQ 350 (581)
Q Consensus 344 l~~L~~~ 350 (581)
+.+|...
T Consensus 155 ~~~l~~~ 161 (164)
T cd04175 155 FYDLVRQ 161 (164)
T ss_pred HHHHHHH
Confidence 9999764
No 115
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.83 E-value=5.4e-20 Score=172.37 Aligned_cols=155 Identities=23% Similarity=0.276 Sum_probs=107.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....+++ .+........+ ....+.+|||||++.|..++..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCch-hhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 379999999999999999999887665444433 33333344442 2367889999999999999999999999999999
Q ss_pred eccCCCChhHHH----HHHH-HhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 269 AADDGVMPQTLE----AIAH-ANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 269 Da~~g~~~~~~~----~i~~-~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
|+++....+... .+.. ....+.|+++|+||+|+........ ...... ...+ ..+++++||++|.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVST-EEGKEL---ARQW--GCPFLETSAKERVNVDEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcH-HHHHHH---HHHc--CCEEEEeecCCCCCHHHH
Confidence 998743222221 1111 1224689999999999964321100 011000 0111 258999999999999999
Q ss_pred HHHHHHHH
Q 008003 344 EVALLLQA 351 (581)
Q Consensus 344 l~~L~~~~ 351 (581)
+++|....
T Consensus 154 ~~~l~~~~ 161 (164)
T smart00173 154 FYDLVREI 161 (164)
T ss_pred HHHHHHHH
Confidence 99998643
No 116
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.83 E-value=1.3e-19 Score=174.13 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=111.0
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec--CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~--~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
++|+++|++|+|||||+++|.+..+.....+++..++... +... ....+.+|||||++.|..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 4899999999999999999999888766666555554333 3332 235789999999999999999999999999999
Q ss_pred EeccCCCChhHHH-HH-HHHh--hcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 268 VAADDGVMPQTLE-AI-AHAN--AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 268 vDa~~g~~~~~~~-~i-~~~~--~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
+|+++....+... .| .... ..++|+|+|+||+|+..... .+.... .....+....+..+++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~--~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTP--AQAESVAKKQGAFAYLECSAKTMENVEE 157 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCH--HHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence 9998754333221 12 1121 24689999999999964321 000000 0000011111122789999999999999
Q ss_pred HHHHHHHHHH
Q 008003 343 LEVALLLQAE 352 (581)
Q Consensus 343 Ll~~L~~~~~ 352 (581)
+++.+...+.
T Consensus 158 ~f~~l~~~~~ 167 (187)
T cd04132 158 VFDTAIEEAL 167 (187)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 117
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.83 E-value=1.1e-19 Score=173.51 Aligned_cols=155 Identities=21% Similarity=0.207 Sum_probs=110.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
+..+|+++|++|+|||||+++|....+. ...|++..++. .+.. .+..+.||||||++.+..++..+++.+|++|+|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY-KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE-CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4589999999999999999999766553 34455544443 3444 678999999999999999999999999999999
Q ss_pred EeccCCC-ChhHHHHHHHHh----hcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 268 VAADDGV-MPQTLEAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 268 vDa~~g~-~~~~~~~i~~~~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|+++.. .....+.+..+. ..+.|+++|+||+|+.+. +.+++...+ +.... ....+.++++||++|.|++
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~---~~~~~-~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKL---GLHSI-RDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHh---Ccccc-CCCcEEEEEeeCCCCCCHH
Confidence 9998742 222233333332 235899999999999643 222222222 11100 1123457899999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
+++++|...
T Consensus 164 e~~~~l~~~ 172 (175)
T smart00177 164 EGLTWLSNN 172 (175)
T ss_pred HHHHHHHHH
Confidence 999999764
No 118
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.83 E-value=2.3e-19 Score=177.01 Aligned_cols=157 Identities=16% Similarity=0.080 Sum_probs=114.9
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC--CeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST--GASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~--g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|++|+|||||+++|.+..+...+.++++.|+....+.+++ ...+.||||||++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999999888777778888887766666643 47889999999999999999999999999999
Q ss_pred EeccCCCChhHH----HHHHHHh---hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 268 VAADDGVMPQTL----EAIAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 268 vDa~~g~~~~~~----~~i~~~~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
+|+++....+.. ..+.... ..+.|+++|+||+|+....... ....... .... ..+++++||++|+|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~-~~~~~~~---~~~~--~~~~~~iSAktg~gv 154 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK-DDKHARF---AQAN--GMESCLVSAKTGDRV 154 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC-HHHHHHH---HHHc--CCEEEEEECCCCCCH
Confidence 999874332222 2222221 1245799999999996321100 0111111 0111 247899999999999
Q ss_pred hhHHHHHHHHHH
Q 008003 341 DDLEVALLLQAE 352 (581)
Q Consensus 341 ~eLl~~L~~~~~ 352 (581)
++++++|.....
T Consensus 155 ~~lf~~l~~~l~ 166 (215)
T cd04109 155 NLLFQQLAAELL 166 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999999987543
No 119
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.83 E-value=1.7e-19 Score=168.45 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=114.2
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|++|+|||||+++|.+..+.....++++.++....+.+ ++ ..+.+|||||++.+...+...++.+|++++|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 48999999999999999999998877666677777766666666 44 5789999999999999999999999999999
Q ss_pred EeccCCCChhHHHHH-HHH---hhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 268 VAADDGVMPQTLEAI-AHA---NAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 268 vDa~~g~~~~~~~~i-~~~---~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
+|+++....+....| ..+ ...++|+++|+||+|+.... .+...... ... .++++++||++|.|+
T Consensus 80 ~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~-------~~~--~~~~~e~Sa~~~~~i 150 (164)
T smart00175 80 YDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA-------EEH--GLPFFETSAKTNTNV 150 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH-------HHc--CCeEEEEeCCCCCCH
Confidence 999874433322222 221 22478999999999986421 12222111 111 257999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++++++|....
T Consensus 151 ~~l~~~i~~~~ 161 (164)
T smart00175 151 EEAFEELAREI 161 (164)
T ss_pred HHHHHHHHHHH
Confidence 99999998643
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.83 E-value=7.6e-20 Score=170.88 Aligned_cols=151 Identities=22% Similarity=0.225 Sum_probs=105.2
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEec
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa 270 (581)
+|+++|++|+|||||+++|....+.. ..+++..+ ...+.. .+..+.+|||||++.|..++..++..+|++|+|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~--~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFN--VETVTY-KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcC--eEEEEE-CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 58999999999999999997766542 33333233 234444 678999999999999999999999999999999999
Q ss_pred cCCCCh-hHHHHHHH-Hh---hcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 271 DDGVMP-QTLEAIAH-AN---AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 271 ~~g~~~-~~~~~i~~-~~---~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
++.... ...+.+.. +. ..++|+++|+||+|+.+.. ..++...+ +.... .....+++++||++|.|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~---~~~~~-~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKL---GLSEL-KDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHh---Ccccc-CCCcEEEEEeeccCCCCHHHHH
Confidence 874221 11222221 12 2478999999999996432 22222222 11100 0123479999999999999999
Q ss_pred HHHHH
Q 008003 345 VALLL 349 (581)
Q Consensus 345 ~~L~~ 349 (581)
++|.+
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99864
No 121
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=5.8e-20 Score=171.75 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=117.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+..+|+++|..+||||||+-++..+.+.....++|.--+....+..+ ...++.+|||+|++.|..+.+.++++|+++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 45799999999999999999999999988777777777777777663 23788899999999999999999999999999
Q ss_pred EEeccCCCChhH-HHHHHHHhhc---CCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 267 VVAADDGVMPQT-LEAIAHANAA---NVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 267 VvDa~~g~~~~~-~~~i~~~~~~---~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|||+++..+.+. ...+..+... ++-+.+|+||+||.... .++....... ....|+++|||||.|
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~---------~gll~~ETSAKTg~N 154 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAES---------QGLLFFETSAKTGEN 154 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHh---------cCCEEEEEecccccC
Confidence 999998433322 2333344332 33366799999996521 1111111111 235799999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
++++|..|.+..
T Consensus 155 v~~if~~Ia~~l 166 (200)
T KOG0092|consen 155 VNEIFQAIAEKL 166 (200)
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
No 122
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.83 E-value=7.8e-20 Score=172.15 Aligned_cols=154 Identities=22% Similarity=0.250 Sum_probs=106.3
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||++++.+..+.....+.+.... ...+... ....+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999998877655444333222 1122221 3467899999999999998888899999999999
Q ss_pred eccCCCChhH----HHHHHHHhh---cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMPQT----LEAIAHANA---ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~~~----~~~i~~~~~---~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|.++....+. .+.+..... .++|+++|+||+|+.....-.. ...... ... ..++++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-~~~~~~---~~~--~~~~~~e~SA~~g~~v~ 154 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS-NEGAAC---ATE--WNCAFMETSAKTNHNVQ 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH-HHHHHH---HHH--hCCcEEEeecCCCCCHH
Confidence 9987543322 222222221 4689999999999964211000 000000 011 13579999999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
+++++|..+
T Consensus 155 ~~f~~l~~~ 163 (165)
T cd04140 155 ELFQELLNL 163 (165)
T ss_pred HHHHHHHhc
Confidence 999999753
No 123
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.83 E-value=9e-20 Score=174.44 Aligned_cols=161 Identities=18% Similarity=0.188 Sum_probs=112.1
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++++|||||+.++....+...+.+++..++ ...+..+ ....+.+|||+|++.|..++..+++.+|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 5799999999999999999999888766666554443 2334442 2377899999999999999999999999999999
Q ss_pred eccCCCChhHH-H-HHHHHh--hcCCCEEEEEeCCCCCCCChhh-----HHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 269 AADDGVMPQTL-E-AIAHAN--AANVPIVVAINKCDKPAADPER-----VKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 269 Da~~g~~~~~~-~-~i~~~~--~~~~piIvViNK~Dl~~~~~~~-----~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|.++....+.. + .+..+. ..+.|+++|+||+|+.+..... ......+.+..+....+..++++|||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99985443332 2 222222 2478999999999995421100 0000011111111111223699999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
|+++|+.+....
T Consensus 161 V~~~F~~~~~~~ 172 (176)
T cd04133 161 VKAVFDAAIKVV 172 (176)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 124
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=1.8e-19 Score=168.98 Aligned_cols=157 Identities=24% Similarity=0.329 Sum_probs=116.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh----------hHH-Hh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF----------SAM-RK 255 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~----------~~~-~~ 255 (581)
++++|+++|++|+|||||+|+|.+... .....+++|++.....+.. ++..+.+|||||+... ... ..
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 357899999999999999999998763 4456778888877776766 7788999999996433 111 12
Q ss_pred hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChh---hHHhhhhhccchhhhcCCcceEEEE
Q 008003 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE---RVKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~---~~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
..+..+|++++|+|++++...+....+..+...+.|+++++||+|+...... .....+... +.. ....+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRK---LPF-LDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhh---ccc-ccCCceEEE
Confidence 3567899999999999887777767677766678999999999999754211 122222211 111 124589999
Q ss_pred eccCCCChhhHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLL 349 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~ 349 (581)
||++|.|++++++++.+
T Consensus 156 Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 156 SALTGQGVDKLFDAIDE 172 (174)
T ss_pred eccCCCCHHHHHHHHHH
Confidence 99999999999999865
No 125
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6.8e-20 Score=171.22 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=122.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+..+|+++|+.+||||||+++++.+.+..++.++|..|+....+.+. ..+.+.+|||||+|.|..+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 445899999999999999999999999999999999999999888873 2367899999999999999999999999999
Q ss_pred EEEeccCCC-ChhHHHHHHHHh---hc-CCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 266 LVVAADDGV-MPQTLEAIAHAN---AA-NVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 266 lVvDa~~g~-~~~~~~~i~~~~---~~-~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
+|||.++.. ..++...+..+. .. ++-+++|+||.||.+.. ++.....+ ..-+++ +..|+++||++|.||
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr--qvs~eEg~--~kAkel--~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR--QVSIEEGE--RKAKEL--NAEFIETSAKAGENV 173 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh--hhhHHHHH--HHHHHh--CcEEEEecccCCCCH
Confidence 999999843 233333333333 23 24588999999997531 11111111 111122 347999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
.+||..|...+
T Consensus 174 k~lFrrIaa~l 184 (221)
T KOG0094|consen 174 KQLFRRIAAAL 184 (221)
T ss_pred HHHHHHHHHhc
Confidence 99999987543
No 126
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.82 E-value=8.1e-20 Score=176.89 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=113.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
...+|+++|..|+|||||+.++....+...+.+++..++. ..+.++ ....+.+|||||++.|..++..+++.+|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 3479999999999999999999998887666666554432 223332 23678999999999999999999999999999
Q ss_pred EEeccCCCChhHHH-HH-HHHh--hcCCCEEEEEeCCCCCCCCh--hhHHh-----hhhhccchhhhcCCcceEEEEecc
Q 008003 267 VVAADDGVMPQTLE-AI-AHAN--AANVPIVVAINKCDKPAADP--ERVKN-----QLGAEGLELEDWGGKVQVVEVSAV 335 (581)
Q Consensus 267 VvDa~~g~~~~~~~-~i-~~~~--~~~~piIvViNK~Dl~~~~~--~~~~~-----~l~~~~~~~~~~~~~~~ii~iSAk 335 (581)
|||+++....+... .| ..+. ..++|+++|+||+||.+... +.... ...+.+..+....+..+++++||+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99998854333322 12 1111 24789999999999964311 00000 000111112221223589999999
Q ss_pred CCCChhhHHHHHHHHH
Q 008003 336 KKTGLDDLEVALLLQA 351 (581)
Q Consensus 336 tg~gI~eLl~~L~~~~ 351 (581)
+|.|++++|++|....
T Consensus 161 ~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 161 NQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998754
No 127
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.82 E-value=1.8e-19 Score=173.00 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=109.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
+..+|+++|.+|+|||||+++|....+. ...|++..++ ..+.. ++..+.+|||||++.+..++..+++.+|++|+|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~-~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4579999999999999999999876654 3445444443 34455 678999999999999999999999999999999
Q ss_pred EeccCCCC-hhHHHHHHHHh----hcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 268 VAADDGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 268 vDa~~g~~-~~~~~~i~~~~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|+++... ......+.... ..++|+++|+||+|+.+... +++...+ +.... ......++++||++|+|++
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l---~l~~~-~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL---GLHSL-RQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh---Ccccc-CCCceEEEeccCCCCCCHH
Confidence 99987432 12222232221 13689999999999965422 2222221 11100 0112356789999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
+++++|...
T Consensus 168 e~~~~l~~~ 176 (181)
T PLN00223 168 EGLDWLSNN 176 (181)
T ss_pred HHHHHHHHH
Confidence 999999764
No 128
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.82 E-value=4.3e-20 Score=170.94 Aligned_cols=162 Identities=20% Similarity=0.221 Sum_probs=123.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
+..++|.|+|++|||||||+|++...++......+|..|+....+.++ .-..+.+|||+|+++|..+...+++.||+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 456899999999999999999999999988788888888888888773 2256789999999999999999999999999
Q ss_pred EEEeccCCCChhHHHHHH-----HHhh---cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 266 LVVAADDGVMPQTLEAIA-----HANA---ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~i~-----~~~~---~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
+|+|.++....+.++.|+ +... ...|+|+++||+|+.+.....+ . .........-.+++|+|++|||.+
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~V-S--~~~Aq~WC~s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQV-S--EKKAQTWCKSKGNIPYFETSAKEA 163 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcccee-e--HHHHHHHHHhcCCceeEEeccccc
Confidence 999999855444444442 2221 2468999999999964221110 0 001111122235789999999999
Q ss_pred CChhhHHHHHHHHH
Q 008003 338 TGLDDLEVALLLQA 351 (581)
Q Consensus 338 ~gI~eLl~~L~~~~ 351 (581)
.|+++.|+.+...+
T Consensus 164 ~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 164 TNVDEAFEEIARRA 177 (210)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999998765
No 129
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.82 E-value=1.5e-19 Score=172.04 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=110.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
..+|+++|.+|+|||||++++....+.....+++...+ ...+.. ++ ..+.||||||.+.|..++..++..+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 46899999999999999999998877654455443333 333444 34 678999999999999999999999999999
Q ss_pred EEeccCCCChhHHH----HHHHHh-hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 267 VVAADDGVMPQTLE----AIAHAN-AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 267 VvDa~~g~~~~~~~----~i~~~~-~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|+|+++....+... .+.... ..++|+++|+||+|+.....-. ....... .... .+++++|||++|.||+
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~-~~~~~~~---a~~~--~~~~~e~Sa~~~~~v~ 153 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVT-TEEGRNL---AREF--NCPFFETSAALRHYID 153 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccC-HHHHHHH---HHHh--CCEEEEEecCCCCCHH
Confidence 99999865444332 233222 2468999999999985321100 0000000 0111 3589999999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
++|++|...
T Consensus 154 ~~f~~l~~~ 162 (172)
T cd04141 154 DAFHGLVRE 162 (172)
T ss_pred HHHHHHHHH
Confidence 999999864
No 130
>PTZ00369 Ras-like protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=175.33 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=109.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
...++|+++|++|+|||||++++.+..+.....+++..++ ...+.++ ....+.+|||||+++|..++..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3458999999999999999999998877554444443333 2333332 3356889999999999999999999999999
Q ss_pred EEEeccCCCChhHH----HHHHHH-hhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 266 LVVAADDGVMPQTL----EAIAHA-NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 266 lVvDa~~g~~~~~~----~~i~~~-~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
+|+|+++....+.. +.+... ...+.|+++|+||+|+.....-. ....... ...+ ..+++++||++|.|+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~-~~~~~~~---~~~~--~~~~~e~Sak~~~gi 155 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVS-TGEGQEL---AKSF--GIPFLETSAKQRVNV 155 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC-HHHHHHH---HHHh--CCEEEEeeCCCCCCH
Confidence 99999874332222 222111 22478999999999985421100 0000010 0111 247999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++++++|....
T Consensus 156 ~~~~~~l~~~l 166 (189)
T PTZ00369 156 DEAFYELVREI 166 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 131
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.82 E-value=1.2e-19 Score=175.25 Aligned_cols=153 Identities=24% Similarity=0.263 Sum_probs=106.6
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
+|+++|.+|+|||||+++|....+.....++++..+ ...+.. ++ ..+.||||||++.|..++..+++.+|++|+|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 589999999999999999998877654444443222 223334 33 46889999999999999999999999999999
Q ss_pred eccCCCChhH----HHHHHHHh---hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMPQT----LEAIAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~~~----~~~i~~~~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|.++...... ...+.... ..+.|+|+|+||+|+.....-.. ...... ...+ ..+++++||++|.|++
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~-~~~~~~---~~~~--~~~~~e~SAk~~~~v~ 152 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST-EEGAAL---ARRL--GCEFIEASAKTNVNVE 152 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH-HHHHHH---HHHh--CCEEEEecCCCCCCHH
Confidence 9987543222 22222222 14689999999999954211000 000110 0111 2479999999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
+++++|....
T Consensus 153 ~l~~~l~~~l 162 (190)
T cd04144 153 RAFYTLVRAL 162 (190)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 132
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=2.8e-19 Score=172.95 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=110.6
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccc-cccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~-~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|++|+|||||+++|....+.. ...++++.++....+.++ ....+.||||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 479999999999999999999887754 344555555544444442 236789999999999999888899999999999
Q ss_pred EeccCCCChh----HHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 268 VAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 268 vDa~~g~~~~----~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
+|+++....+ +...+......++|+++|+||+|+...... ........ ...+ ..+++++||++|.|+++|
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~-~~~~~~~l---~~~~--~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVV-KREDGERL---AKEY--GVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcccc-CHHHHHHH---HHHc--CCeEEEEeCCCCCCHHHH
Confidence 9998743222 222222223346899999999999532110 00111111 1111 248999999999999999
Q ss_pred HHHHHHHHH
Q 008003 344 EVALLLQAE 352 (581)
Q Consensus 344 l~~L~~~~~ 352 (581)
+++|.....
T Consensus 155 ~~~l~~~~~ 163 (191)
T cd04112 155 FTAVAKELK 163 (191)
T ss_pred HHHHHHHHH
Confidence 999987653
No 133
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.82 E-value=2.3e-19 Score=169.45 Aligned_cols=153 Identities=21% Similarity=0.175 Sum_probs=111.3
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
..+|+++|++|+|||||+++|.+..+.....+.++.+.....+... ....+.||||||++.+..++..+++.+|++++|
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLT 84 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEE
Confidence 4789999999999999999999888776666666666555555542 336788999999999999999999999999999
Q ss_pred EeccCCCChhHHH----HHHHHh----hcCCCEEEEEeCCCCCCCC--hhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 268 VAADDGVMPQTLE----AIAHAN----AANVPIVVAINKCDKPAAD--PERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 268 vDa~~g~~~~~~~----~i~~~~----~~~~piIvViNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
+|.++....+... .+.... ..++|+++|+||+|+.... .++..+.... . +..+++++||++|
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~-~~~~~~e~Sa~~~ 156 (170)
T cd04116 85 FAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE-------N-GDYPYFETSAKDA 156 (170)
T ss_pred EECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH-------C-CCCeEEEEECCCC
Confidence 9998753322222 221111 2457999999999995321 1222221111 1 2247899999999
Q ss_pred CChhhHHHHHHH
Q 008003 338 TGLDDLEVALLL 349 (581)
Q Consensus 338 ~gI~eLl~~L~~ 349 (581)
.|++++++.+.+
T Consensus 157 ~~v~~~~~~~~~ 168 (170)
T cd04116 157 TNVAAAFEEAVR 168 (170)
T ss_pred CCHHHHHHHHHh
Confidence 999999999875
No 134
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.82 E-value=2.3e-19 Score=169.14 Aligned_cols=154 Identities=20% Similarity=0.225 Sum_probs=111.2
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....+.++.++....+.+++ ...+.+|||||++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 4799999999999999999999877665555556666555555522 256779999999999999999999999999999
Q ss_pred eccCCCChhHHHHH-----HHHh---hcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 269 AADDGVMPQTLEAI-----AHAN---AANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 269 Da~~g~~~~~~~~i-----~~~~---~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
|++++...+....| ..+. ..++|+++|+||+|+.... .+....... . .+..+++++||++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~-~~~~~~~~~Sa~~~ 152 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ-------S-NGNIPYFETSAKEA 152 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH-------H-cCCceEEEEECCCC
Confidence 99874332222222 1111 1268999999999996321 122211111 1 12358999999999
Q ss_pred CChhhHHHHHHHHH
Q 008003 338 TGLDDLEVALLLQA 351 (581)
Q Consensus 338 ~gI~eLl~~L~~~~ 351 (581)
.|+++++++|...+
T Consensus 153 ~gv~~l~~~i~~~~ 166 (172)
T cd01862 153 INVEQAFETIARKA 166 (172)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998643
No 135
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.82 E-value=7.6e-20 Score=169.82 Aligned_cols=147 Identities=27% Similarity=0.315 Sum_probs=110.5
Q ss_pred EEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH------HHhhcc--ccccEEE
Q 008003 194 VMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA------MRKRGA--AVTDIVV 265 (581)
Q Consensus 194 IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~------~~~~~~--~~aDivl 265 (581)
++|++|+|||||+|+|.+.....++.+++|.+.....+.+ ++..+.||||||+..+.. ++..++ ..+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee-CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence 5899999999999999998776677889999988777777 678999999999877653 344444 4899999
Q ss_pred EEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 266 LVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
+|+|+++. ......+..+...++|+++|+||+|+.+... ......+. ..+ ..+++++||++|.|+++++
T Consensus 80 ~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~------~~~--~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 80 NVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLS------ELL--GVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHH------Hhh--CCCeEEEEccCCCCHHHHH
Confidence 99999873 2333444555667899999999999964321 11111111 111 2479999999999999999
Q ss_pred HHHHHHH
Q 008003 345 VALLLQA 351 (581)
Q Consensus 345 ~~L~~~~ 351 (581)
++|....
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9987643
No 136
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.82 E-value=1.9e-19 Score=173.06 Aligned_cols=160 Identities=22% Similarity=0.241 Sum_probs=109.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec--CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~--~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
...+|+++|++|+|||||++++....+... .++++.+.....+... .+..+.+|||||++.|..++..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 457899999999999999999988766532 4433333333333221 4578999999999999999999999999999
Q ss_pred EEEeccCCCChhHH-H----HHHHHhhcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 266 LVVAADDGVMPQTL-E----AIAHANAANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 266 lVvDa~~g~~~~~~-~----~i~~~~~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
+|+|+++....... . ........++|+++|+||+|+... ..+.....+...... .....+++++||++|.|
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~SA~~~~g 157 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELS---ASTPWHVQPACAIIGEG 157 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccC---CCCceEEEEeecccCCC
Confidence 99999874221111 1 112223357899999999999643 222222111100000 00124689999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+++++++|....
T Consensus 158 i~~l~~~l~~~l 169 (183)
T cd04152 158 LQEGLEKLYEMI 169 (183)
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 137
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.82 E-value=2e-19 Score=169.05 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=111.7
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|++|+|||||++++....+.....++++.++....+.. ++ ..+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 37999999999999999999998887666777777766666665 34 5788999999999999999999999999999
Q ss_pred EeccCCCChhH----HHHHHHHhhcCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 268 VAADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 268 vDa~~g~~~~~----~~~i~~~~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|.++....+. .+.+......+.|+++|+||+|+..... ......+. ..+ ..+++++||++|.|++
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~e~Sa~~~~~v~ 151 (161)
T cd04117 80 YDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLA------KEY--GMDFFETSACTNSNIK 151 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH------HHc--CCEEEEEeCCCCCCHH
Confidence 99987432222 2222222223689999999999954321 11111111 112 2579999999999999
Q ss_pred hHHHHHHH
Q 008003 342 DLEVALLL 349 (581)
Q Consensus 342 eLl~~L~~ 349 (581)
+++++|..
T Consensus 152 ~~f~~l~~ 159 (161)
T cd04117 152 ESFTRLTE 159 (161)
T ss_pred HHHHHHHh
Confidence 99999975
No 138
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.82 E-value=1.2e-19 Score=171.91 Aligned_cols=159 Identities=20% Similarity=0.222 Sum_probs=108.5
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....+.+. +.....+.++ ..+.+.+|||||++.|...+...++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 4799999999999999999998887655544333 3333344442 2356789999999999999989999999999999
Q ss_pred eccCCCChhH-----HHHHHHHhhcCCCEEEEEeCCCCCCCChhhH-Hhhh------hhccchhhhcCCcceEEEEeccC
Q 008003 269 AADDGVMPQT-----LEAIAHANAANVPIVVAINKCDKPAADPERV-KNQL------GAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 269 Da~~g~~~~~-----~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~-~~~l------~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
|.++....+. ...+... ..+.|+++|+||+|+.+...... .... .+.+..+....+..++++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 9987533222 2222222 45789999999999864321110 0000 00011111111234799999999
Q ss_pred CCChhhHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQ 350 (581)
Q Consensus 337 g~gI~eLl~~L~~~ 350 (581)
|.|++++++.+...
T Consensus 159 ~~gi~~~f~~~~~~ 172 (174)
T cd04135 159 QKGLKTVFDEAILA 172 (174)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998764
No 139
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.82 E-value=1.8e-19 Score=173.47 Aligned_cols=159 Identities=25% Similarity=0.278 Sum_probs=111.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.+..+|+++|++|+|||||+++|.+..+. ...+ |.......+.+ ++..+.+|||||+..+...+..++..+|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~--T~~~~~~~i~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVP--TLHPTSEELTI-GNIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCC--ccCcceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999987653 2222 33333345555 67899999999999998888889999999999
Q ss_pred EEeccCCCC-hhHHHHHHHH----hhcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchh-------hhcCCcceEEEEe
Q 008003 267 VVAADDGVM-PQTLEAIAHA----NAANVPIVVAINKCDKPAA-DPERVKNQLGAEGLEL-------EDWGGKVQVVEVS 333 (581)
Q Consensus 267 VvDa~~g~~-~~~~~~i~~~----~~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~-------~~~~~~~~ii~iS 333 (581)
|+|+++... ......+..+ ...+.|+++++||+|+... ..++....+....... .......++++||
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCS 172 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeE
Confidence 999987421 1122222222 1246899999999999643 3333333332211100 1112335799999
Q ss_pred ccCCCChhhHHHHHHH
Q 008003 334 AVKKTGLDDLEVALLL 349 (581)
Q Consensus 334 Aktg~gI~eLl~~L~~ 349 (581)
|++|+|+++++++|..
T Consensus 173 a~~~~gv~e~~~~l~~ 188 (190)
T cd00879 173 VVKRQGYGEAFRWLSQ 188 (190)
T ss_pred ecCCCChHHHHHHHHh
Confidence 9999999999999975
No 140
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82 E-value=1.6e-19 Score=176.73 Aligned_cols=157 Identities=27% Similarity=0.350 Sum_probs=111.0
Q ss_pred CEEEEEccCCCCcchHhhhhhccc---ccccccCceeEeeeeEEEeec--------------------------CC----
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVGMS--------------------------TG---- 236 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~---~~~~~~~g~T~d~~~~~~~~~--------------------------~g---- 236 (581)
.+|+++||.|+|||||+.+|.+.. .......+.|.......+.+. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997542 122223344544443332221 02
Q ss_pred --eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCC-CChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCC-hhhHHh
Q 008003 237 --ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-VMPQTLEAIAHANAANV-PIVVAINKCDKPAAD-PERVKN 311 (581)
Q Consensus 237 --~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g-~~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~-~~~~~~ 311 (581)
..+.|||||||++|...+..++..+|++++|+|++++ ...++.+.+..+...+. |+++|+||+|+.+.. .....+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYE 160 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHH
Confidence 7899999999999999999999999999999999984 56677777776665565 699999999996421 111112
Q ss_pred hhhhccchhhhc-CCcceEEEEeccCCCChhhHHHHHHH
Q 008003 312 QLGAEGLELEDW-GGKVQVVEVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 312 ~l~~~~~~~~~~-~~~~~ii~iSAktg~gI~eLl~~L~~ 349 (581)
.+.+. +... ....+++++||++|+|+++|+++|..
T Consensus 161 ~i~~~---~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 161 QIKKF---VKGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred HHHHH---HhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 22111 1111 12458999999999999999999975
No 141
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=3.1e-19 Score=194.33 Aligned_cols=161 Identities=26% Similarity=0.367 Sum_probs=125.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch----------hhHH-H
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA----------FSAM-R 254 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~----------~~~~-~ 254 (581)
...++|+++|++|+|||||+|+|++.. ...++.+|+|++.....+.. ++..+.+|||||+.. |... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 357999999999999999999999764 56778899999998877776 788999999999643 2222 2
Q ss_pred hhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEe
Q 008003 255 KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 255 ~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iS 333 (581)
.++++.+|++|+|+|++++...++...+..+...++|+++|+||+|+.+.. .......+... +. .....+++++|
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~---l~-~~~~~~i~~~S 325 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRR---LP-FLDYAPIVFIS 325 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHh---cc-cccCCCEEEEe
Confidence 357789999999999999999999988888888899999999999997321 11122222111 11 12346899999
Q ss_pred ccCCCChhhHHHHHHHHHH
Q 008003 334 AVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 334 Aktg~gI~eLl~~L~~~~~ 352 (581)
|++|.|++++++.+....+
T Consensus 326 A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887554
No 142
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.81 E-value=3e-19 Score=169.60 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=112.0
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEe
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvD 269 (581)
+|+++|++|+|||||++++.+..+...+.+++..++....+... ....+.||||||++.|..++..+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999998877777777777655555542 23679999999999999999999999999999999
Q ss_pred ccCCCChhHH-HHHHHHhh----cCCCEEEEEeCCCCCCCChhh-HHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 270 ADDGVMPQTL-EAIAHANA----ANVPIVVAINKCDKPAADPER-VKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 270 a~~g~~~~~~-~~i~~~~~----~~~piIvViNK~Dl~~~~~~~-~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
+++....... ..+..+.. ...|+++|+||+|+....... ........ ...+ ..+++++||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~---~~~~--~~~~~e~Sa~~g~~v~~l 156 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL---AAEM--QAEYWSVSALSGENVREF 156 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH---HHHc--CCeEEEEECCCCCCHHHH
Confidence 9873222222 22222211 235699999999995432111 11111111 0111 247899999999999999
Q ss_pred HHHHHHHH
Q 008003 344 EVALLLQA 351 (581)
Q Consensus 344 l~~L~~~~ 351 (581)
++.|...+
T Consensus 157 f~~l~~~~ 164 (170)
T cd04108 157 FFRVAALT 164 (170)
T ss_pred HHHHHHHH
Confidence 99998765
No 143
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.81 E-value=2e-19 Score=167.78 Aligned_cols=153 Identities=24% Similarity=0.276 Sum_probs=105.7
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEec
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa 270 (581)
+|+++|++|+|||||+++|.+..+.. ..+++..+ ...+....+..+.+|||||++.+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~--~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFN--VEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcc--eEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999887643 23333222 2334343567999999999999999998899999999999999
Q ss_pred cCCCC-hhHHHHHHHH----hhcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 271 DDGVM-PQTLEAIAHA----NAANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 271 ~~g~~-~~~~~~i~~~----~~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
+++.. ......+..+ ...+.|+++|+||+|+... ....+...+...... .....+++++||++|+|+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYC---SDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccC---CCCcEEEEecccccCCChHHHH
Confidence 87432 1112222221 1257899999999999643 222222222111111 1123579999999999999999
Q ss_pred HHHHH
Q 008003 345 VALLL 349 (581)
Q Consensus 345 ~~L~~ 349 (581)
++|..
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 144
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=4.2e-19 Score=167.21 Aligned_cols=152 Identities=17% Similarity=0.195 Sum_probs=113.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
-++|+++|++|+|||||+++|....+.....++++.+.....+.+ ++ ..+.+|||||++.+...+..++..+|++++
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999999987766555666666666666666 44 568899999999999998899999999999
Q ss_pred EEeccCCCCh----hHHHHHHHHhhcCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~----~~~~~i~~~~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|++++... .+...+......+.|+++|+||+|+..... ......+. .. ...+++++||++|.|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~-------~~-~~~~~~~~Sa~~~~gv 157 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFS-------DA-QDMYYLETSAKESDNV 157 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHH-------HH-cCCeEEEeeCCCCCCH
Confidence 9999875332 233333444445789999999999964221 11111111 11 1257999999999999
Q ss_pred hhHHHHHHH
Q 008003 341 DDLEVALLL 349 (581)
Q Consensus 341 ~eLl~~L~~ 349 (581)
++++++|..
T Consensus 158 ~~l~~~i~~ 166 (169)
T cd04114 158 EKLFLDLAC 166 (169)
T ss_pred HHHHHHHHH
Confidence 999999875
No 145
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=5.9e-19 Score=188.42 Aligned_cols=302 Identities=24% Similarity=0.233 Sum_probs=226.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc------------------ccccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS------------------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~------------------~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
..+-.+|.|+-|-++|||||.++.+... .......|+|.......+.| ..+.++++|||||
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPGH 114 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCCc
Confidence 3466789999999999999999875311 11123468898888888888 6899999999999
Q ss_pred chhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccch--------
Q 008003 248 AAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLE-------- 319 (581)
Q Consensus 248 ~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~-------- 319 (581)
-+|....+++++..|.+++|+|+..|+..|+...|++++..++|.|..+||+|..++++-+..+.+......
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiP 194 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIP 194 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEcc
Confidence 999999999999999999999999999999999999999999999999999999877654433332110000
Q ss_pred ----------------------------------------------------------------hhh-------------
Q 008003 320 ----------------------------------------------------------------LED------------- 322 (581)
Q Consensus 320 ----------------------------------------------------------------~~~------------- 322 (581)
+++
T Consensus 195 ig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIR 274 (721)
T KOG0465|consen 195 IGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIR 274 (721)
T ss_pred ccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHH
Confidence 000
Q ss_pred ----cCCcceEEEEeccCCCChhhHHHHHHHHHHHhhc------------------ccccCC-CcceEEEEEEeecCCCc
Q 008003 323 ----WGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL------------------KARVDG-PAQAYVVEARLDKGRGP 379 (581)
Q Consensus 323 ----~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~------------------~~~~~~-~~~~~V~e~~~~~~~G~ 379 (581)
.+..+|++.-||..+.|++-|++++......+.. ....+. |+.+..+.....+. |.
T Consensus 275 r~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f-Gq 353 (721)
T KOG0465|consen 275 RATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRF-GQ 353 (721)
T ss_pred HHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCc-cc
Confidence 1123568888999999999999999864321110 001222 78888887777776 99
Q ss_pred EEEEEEeccEEeeCcEEEEccccceEEE-----EEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHH
Q 008003 380 LTTAIVKAGTLVCGQHVVVGHEWGRIRA-----IRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSS 454 (581)
Q Consensus 380 v~~~~V~~GtLk~gd~i~~g~~~~kVk~-----i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~ 454 (581)
..+++|.+|+|+.||+|+..+...|||. |+....+.|+++.+|+.+.+.|+.. ..||+|.--.+.
T Consensus 354 LTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGidc--asGDTftd~~~~-------- 423 (721)
T KOG0465|consen 354 LTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGIDC--ASGDTFTDKQNL-------- 423 (721)
T ss_pred eEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecccc--ccCceeccCccc--------
Confidence 9999999999999999999877666653 4555678899999999999999955 589999642210
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeE
Q 008003 455 GRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV 519 (581)
Q Consensus 455 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i 519 (581)
.+..+.+..-.+.+.+-||..+.-..++...+|..+..+...+++
T Consensus 424 --------------------~~~m~si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv 468 (721)
T KOG0465|consen 424 --------------------ALSMESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRV 468 (721)
T ss_pred --------------------cceeeeeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEE
Confidence 000011112345677778999999999999999998887654443
No 146
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.81 E-value=3.4e-19 Score=164.70 Aligned_cols=146 Identities=26% Similarity=0.376 Sum_probs=112.9
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHH--------Hhhccc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM--------RKRGAA 259 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~--------~~~~~~ 259 (581)
|.+|+++|++|+|||||+++|.+... ..+..+++|.+.....+.. ++.++.+|||||+.++... ....+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 56899999999999999999998765 3456788888887777776 6889999999997655321 234667
Q ss_pred cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
.+|++++|+|+++.........+.. ..+.|+++|+||+|+...... .......+++++||+++.|
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-------------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-------------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-------------ccccCCCceEEEECCCCCC
Confidence 8999999999998665555554443 457899999999999643221 0111245899999999999
Q ss_pred hhhHHHHHHHH
Q 008003 340 LDDLEVALLLQ 350 (581)
Q Consensus 340 I~eLl~~L~~~ 350 (581)
+++|+++|...
T Consensus 145 v~~l~~~l~~~ 155 (157)
T cd04164 145 LDELKEALLEL 155 (157)
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 147
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.81 E-value=2.2e-19 Score=170.08 Aligned_cols=158 Identities=18% Similarity=0.253 Sum_probs=107.0
Q ss_pred EEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEec
Q 008003 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa 270 (581)
|+|+|++|+|||||+++|.+..+.....+++.... ...+.++ ....+.+|||||++.+..++...++.+|++|+|+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999887665555554443 2334442 224689999999999999999899999999999999
Q ss_pred cCCCChhHH-H-HHHHHh--hcCCCEEEEEeCCCCCCCChh--hHHh-----hhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 271 DDGVMPQTL-E-AIAHAN--AANVPIVVAINKCDKPAADPE--RVKN-----QLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 271 ~~g~~~~~~-~-~i~~~~--~~~~piIvViNK~Dl~~~~~~--~~~~-----~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
++....+.. . .+..+. ..++|+++|+||+|+...... .... .-.+....+....+..++++|||++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 874322221 1 122222 247899999999999642110 0000 0000011111122234799999999999
Q ss_pred hhhHHHHHHHH
Q 008003 340 LDDLEVALLLQ 350 (581)
Q Consensus 340 I~eLl~~L~~~ 350 (581)
++++++.+...
T Consensus 160 v~~lf~~l~~~ 170 (174)
T smart00174 160 VREVFEEAIRA 170 (174)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 148
>PRK04213 GTP-binding protein; Provisional
Probab=99.81 E-value=3.7e-19 Score=173.13 Aligned_cols=155 Identities=24% Similarity=0.374 Sum_probs=107.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCc-----------chhhHHHhh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH-----------AAFSAMRKR 256 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~-----------~~~~~~~~~ 256 (581)
+.++|+++|++|+|||||+|+|.+..+..+..+|+|++.... .. + .+.+|||||+ +.+...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~--~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHY--DW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEE--ee-c--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 458999999999999999999999887777788888875433 33 2 6999999994 444444333
Q ss_pred ----ccccccEEEEEEeccCCC-----------ChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccc--h
Q 008003 257 ----GAAVTDIVVLVVAADDGV-----------MPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGL--E 319 (581)
Q Consensus 257 ----~~~~aDivllVvDa~~g~-----------~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~--~ 319 (581)
.+..+|++++|+|++... ...+.+.+..+...++|+++|+||+|+.+...+...+.....+. .
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 162 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPP 162 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCcc
Confidence 345678999999986521 12334556666667899999999999964331111111111121 0
Q ss_pred hhhcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 320 LEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 320 ~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
...+ ..+++++||++| |+++++++|...
T Consensus 163 ~~~~--~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 163 WRQW--QDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred cccc--CCcEEEEecccC-CHHHHHHHHHHh
Confidence 0011 136899999999 999999999764
No 149
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.81 E-value=4.2e-19 Score=172.95 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=113.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.++|+++|++|+|||||+++|.+..+...+.++++.++....+.+. ....+.||||||++.|..++..+++.+|++++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 4799999999999999999999888766666666666655555552 225788999999999999999999999999999
Q ss_pred EeccCCCChhHHH-HHHHHh--hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 268 VAADDGVMPQTLE-AIAHAN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 268 vDa~~g~~~~~~~-~i~~~~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
+|+++....+... .+..+. ....|+++|+||+|+....... ........ ..+ ..+++++||++|.||++++
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~-~~~~~~~~---~~~--~~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE-TEDAYKFA---GQM--GISLFETSAKENINVEEMF 159 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC-HHHHHHHH---HHc--CCEEEEEECCCCcCHHHHH
Confidence 9998743322222 222222 2357999999999996431100 01111100 111 2579999999999999999
Q ss_pred HHHHHHH
Q 008003 345 VALLLQA 351 (581)
Q Consensus 345 ~~L~~~~ 351 (581)
++|....
T Consensus 160 ~~l~~~~ 166 (199)
T cd04110 160 NCITELV 166 (199)
T ss_pred HHHHHHH
Confidence 9998754
No 150
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.81 E-value=4.1e-19 Score=170.71 Aligned_cols=156 Identities=20% Similarity=0.198 Sum_probs=108.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
++..+|+++|++|+|||||++++....+.. ..+++..++ ..+.. .+..+.+|||||++.+..++..+++.+|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~--~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV--ETVEY-KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce--EEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 345799999999999999999997665543 344443333 34444 67899999999999999999999999999999
Q ss_pred EEeccCCC-ChhHHHHHHHHh----hcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGV-MPQTLEAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~-~~~~~~~i~~~~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|+++.. .....+.+.... ..+.|+++|+||+|+.... ...+...+ +.... ....+.++++||++|.|+
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l---~~~~~-~~~~~~~~~~Sa~tg~gv 166 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKL---GLHSV-RQRNWYIQGCCATTAQGL 166 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHh---CCCcc-cCCcEEEEeeeCCCCCCH
Confidence 99998732 112222232221 1357999999999996432 22222222 11100 012246779999999999
Q ss_pred hhHHHHHHHH
Q 008003 341 DDLEVALLLQ 350 (581)
Q Consensus 341 ~eLl~~L~~~ 350 (581)
++++++|...
T Consensus 167 ~e~~~~l~~~ 176 (182)
T PTZ00133 167 YEGLDWLSAN 176 (182)
T ss_pred HHHHHHHHHH
Confidence 9999999763
No 151
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.81 E-value=1.7e-19 Score=175.84 Aligned_cols=156 Identities=21% Similarity=0.171 Sum_probs=106.7
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhh--------HHHhhccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFS--------AMRKRGAA 259 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~--------~~~~~~~~ 259 (581)
.+|+|+|.+|||||||+++|.+..+.....|+++.++....+.+ ++ +.+.||||||++.+. ......+.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 47999999999999999999998877666676666654444444 44 678899999976542 12335678
Q ss_pred cccEEEEEEeccCCCChhHHHHH-HHHh------hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEE
Q 008003 260 VTDIVVLVVAADDGVMPQTLEAI-AHAN------AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~~~i-~~~~------~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
.+|++|+|||++++...+....+ ..+. ..++|+++|+||+|+....... ...... +......++++++
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~-~~~~~~----~~~~~~~~~~~e~ 154 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP-RHVLSV----LVRKSWKCGYLEC 154 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc-HHHHHH----HHHHhcCCcEEEe
Confidence 99999999999875433322222 2221 2568999999999995421110 111111 1000124689999
Q ss_pred eccCCCChhhHHHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~~~ 351 (581)
||++|.|+++||+.+....
T Consensus 155 Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 155 SAKYNWHILLLFKELLISA 173 (198)
T ss_pred cCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998644
No 152
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.81 E-value=4.1e-19 Score=166.10 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=108.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+|+|.+..+.....+.+..++....+.++ .+..+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988765444444444444444442 3467899999999999988888999999999999
Q ss_pred eccCCCChhH-HHHHHHH---hhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMPQT-LEAIAHA---NAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~~~-~~~i~~~---~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|+++...... ...+..+ ...++|+++++||+|+.... .+....... .. ..+++++||++|.|++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~~~v~ 152 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYAD-------EN--GLLFFETSAKTGENVN 152 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHH-------Hc--CCEEEEEECCCCCCHH
Confidence 9987422111 2222222 22457899999999986321 111111111 11 2579999999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
+++++|...
T Consensus 153 ~l~~~l~~~ 161 (163)
T cd01860 153 ELFTEIAKK 161 (163)
T ss_pred HHHHHHHHH
Confidence 999999764
No 153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.81 E-value=2.6e-19 Score=170.52 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=108.0
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
..+|+++|++|+|||||+++|....+.. ..+++..++ ..+.. ++..+.+|||||++.|...+..++..+|++++|+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVY-KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEE-CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 5789999999999999999998776543 333333333 34444 6789999999999999999999999999999999
Q ss_pred eccCCCCh-hHHHHHHHH-h---hcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 269 AADDGVMP-QTLEAIAHA-N---AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 269 Da~~g~~~-~~~~~i~~~-~---~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
|+++.... ...+.+..+ . ..++|+++++||+|+... +.+++.+.+..... . ...++++++||++|+|+++
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~--~--~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSI--R--DHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc--c--CCceEEEecccCCCCCHHH
Confidence 99874321 112222222 1 135899999999999653 22222222211110 0 1235799999999999999
Q ss_pred HHHHHHH
Q 008003 343 LEVALLL 349 (581)
Q Consensus 343 Ll~~L~~ 349 (581)
++++|..
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999863
No 154
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.81 E-value=2.7e-19 Score=177.09 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=114.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
....+|+++|++|+|||||++++....+.....+++..++....+... ....+.+|||||++.|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 456899999999999999999998887766556655555555445442 3478999999999999999999999999999
Q ss_pred EEEeccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 266 LVVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 266 lVvDa~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|||.++....+.. ..+... ..+.|+++|+||+|+....... ..+ . +... ..++++++||++|.|++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~~v~~--~~~-~----~~~~-~~~~~~e~SAk~~~~i~ 161 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKA--KQV-T----FHRK-KNLQYYEISAKSNYNFE 161 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhhccCCH--HHH-H----HHHh-cCCEEEEcCCCCCCCHH
Confidence 99999985433322 222222 2468999999999995321111 111 1 1111 23579999999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
++|++|....
T Consensus 162 ~~f~~l~~~~ 171 (219)
T PLN03071 162 KPFLYLARKL 171 (219)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 155
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.81 E-value=1.9e-19 Score=167.75 Aligned_cols=151 Identities=25% Similarity=0.289 Sum_probs=106.4
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEec
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa 270 (581)
+|+++|++|+|||||++++.+.... ...+ |..+....+.. ++..+.+|||||++.+...+...+..+|++++|+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~--t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIP--TIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCC--CcCcceEEEEE-CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 5899999999999999999988632 2222 22233334444 678999999999999999999999999999999999
Q ss_pred cCCCC-hhHHHHHHH----HhhcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 271 DDGVM-PQTLEAIAH----ANAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 271 ~~g~~-~~~~~~i~~----~~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
+++.. ......+.. ....+.|+++|+||+|+.... .++....+.... ......+++++||++|.|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK----ILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh----ccCCcEEEEEeeCCCCCCHHHHH
Confidence 97421 122222222 223578999999999996533 222222221110 11124589999999999999999
Q ss_pred HHHHH
Q 008003 345 VALLL 349 (581)
Q Consensus 345 ~~L~~ 349 (581)
++|..
T Consensus 153 ~~l~~ 157 (158)
T cd00878 153 DWLLQ 157 (158)
T ss_pred HHHhh
Confidence 99864
No 156
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.5e-19 Score=170.43 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=124.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
....+|+++|++|||||+|+.++..+.+..+...++..|+....+.+++ ...+.+|||+|++.|..+...+++.|++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 4568999999999999999999999999988898899999999888842 257889999999999999999999999999
Q ss_pred EEEeccCCCC----hhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 266 LVVAADDGVM----PQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 266 lVvDa~~g~~----~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|||.++... ..|++.+......++|.++|+||+|+.... .. -.+.+..+..- ..++|+++||++|.||+
T Consensus 90 LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R---~V--~~e~ge~lA~e-~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKR---QV--SKERGEALARE-YGIKFFETSAKTNFNIE 163 (207)
T ss_pred EEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccc---cc--cHHHHHHHHHH-hCCeEEEccccCCCCHH
Confidence 9999998433 235555555555689999999999996421 00 01111111111 14689999999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
+.|-.|.+.
T Consensus 164 eaF~~La~~ 172 (207)
T KOG0078|consen 164 EAFLSLARD 172 (207)
T ss_pred HHHHHHHHH
Confidence 999888763
No 157
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.81 E-value=3.1e-19 Score=168.13 Aligned_cols=152 Identities=22% Similarity=0.189 Sum_probs=104.0
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCe-EEEEEeCCCcchh-------hHHHhhcccccc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGA-SITFLDTPGHAAF-------SAMRKRGAAVTD 262 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~-~i~liDTpG~~~~-------~~~~~~~~~~aD 262 (581)
+|+++|++|||||||+|+|.+....++..+++|++.....+.. ++. .+.||||||+.+. .....+.+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999987766666677777766666665 454 9999999996421 122223455799
Q ss_pred EEEEEEeccCC-CChhHHHHH-HHHhh-----cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEecc
Q 008003 263 IVVLVVAADDG-VMPQTLEAI-AHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (581)
Q Consensus 263 ivllVvDa~~g-~~~~~~~~i-~~~~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAk 335 (581)
++++|+|++++ ...+....+ ..+.. .++|+++|+||+|+.+... ....+... .... ...+++++||+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~---~~~~-~~~~~~~~Sa~ 154 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE--LFELLKEL---LKEL-WGKPVFPISAL 154 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh--hHHHHHHH---HhhC-CCCCEEEEecC
Confidence 99999999976 232332222 22221 3689999999999964322 11111111 0110 13578999999
Q ss_pred CCCChhhHHHHHHH
Q 008003 336 KKTGLDDLEVALLL 349 (581)
Q Consensus 336 tg~gI~eLl~~L~~ 349 (581)
+|.|+++++++|..
T Consensus 155 ~~~gi~~l~~~i~~ 168 (170)
T cd01898 155 TGEGLDELLRKLAE 168 (170)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999999875
No 158
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.81 E-value=3.7e-19 Score=171.09 Aligned_cols=162 Identities=15% Similarity=0.182 Sum_probs=112.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
...+|+++|++++|||||++++....+.....|++..++. ..+..+ ....+.+|||+|++.|..++..+++.+|++|+
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 3468999999999999999999998887666665554432 334442 34678999999999999999999999999999
Q ss_pred EEeccCCCChhHH-HHH-HHHh--hcCCCEEEEEeCCCCCCCChh-------hHHhhhhhccchhhhcCCcceEEEEecc
Q 008003 267 VVAADDGVMPQTL-EAI-AHAN--AANVPIVVAINKCDKPAADPE-------RVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~i-~~~~--~~~~piIvViNK~Dl~~~~~~-------~~~~~l~~~~~~~~~~~~~~~ii~iSAk 335 (581)
|||.++....+.. ..| ..+. ..+.|+++|+||+||...... +......+.+..+....+..++++|||+
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk 162 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 162 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence 9999985433332 222 2222 246899999999999532100 0000111112222222223489999999
Q ss_pred CCCC-hhhHHHHHHHH
Q 008003 336 KKTG-LDDLEVALLLQ 350 (581)
Q Consensus 336 tg~g-I~eLl~~L~~~ 350 (581)
+|.| |+++|+.+.+.
T Consensus 163 ~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 163 QSENSVRDIFHVATLA 178 (182)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9998 99999988763
No 159
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.81 E-value=1.9e-19 Score=178.10 Aligned_cols=158 Identities=17% Similarity=0.130 Sum_probs=108.3
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEe
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvD 269 (581)
.+|+++|.+|+|||||+++|....+.. ..+++..++... .+ ..+.+.||||||++.|..++..+++.+|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~--~~-~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK--QW-GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE--Ee-eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 479999999999999999999988753 344444443322 23 46789999999999999999999999999999999
Q ss_pred ccCCCChhHHH-HHHHH---hhcCCCEEEEEeCCCCCCCCh--------h------hHHhhhhhccchhh-hcC------
Q 008003 270 ADDGVMPQTLE-AIAHA---NAANVPIVVAINKCDKPAADP--------E------RVKNQLGAEGLELE-DWG------ 324 (581)
Q Consensus 270 a~~g~~~~~~~-~i~~~---~~~~~piIvViNK~Dl~~~~~--------~------~~~~~l~~~~~~~~-~~~------ 324 (581)
+++....+... .+..+ ...++|+|+|+||+|+..... . .......+.+..+. .++
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 99853333222 22222 234689999999999964100 0 00000011111111 111
Q ss_pred ------CcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 325 ------GKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 325 ------~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
..+++++|||++|.||+++|+.+....
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 125899999999999999999998644
No 160
>PTZ00416 elongation factor 2; Provisional
Probab=99.81 E-value=1.9e-18 Score=200.91 Aligned_cols=115 Identities=30% Similarity=0.398 Sum_probs=95.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc----------------cccccCceeEeeeeEEEeec---------CCeEEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL----------------VAKEAGGITQHMGAFVVGMS---------TGASITFL 242 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~----------------~~~~~~g~T~d~~~~~~~~~---------~g~~i~li 242 (581)
+..+|+|+||+|+|||||+++|+...- ......|+|.+.....+.+. .++.++|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 446999999999999999999975321 11123567766655555442 16789999
Q ss_pred eCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 243 DTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 243 DTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
|||||.+|......+++.+|++|+|+|+.+|+..++..+|..+...++|+|+++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 999999999999999999999999999999999999999999998899999999999997
No 161
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.81 E-value=3.9e-19 Score=166.04 Aligned_cols=151 Identities=18% Similarity=0.178 Sum_probs=108.3
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....+.++.+.....+.+. ....+.+|||||++.+.......++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 479999999999999999999887655445544444443333332 3367999999999999988888999999999999
Q ss_pred eccCCCChhHHHHH-H----HHhhcCCCEEEEEeCCCCCCCC--hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMPQTLEAI-A----HANAANVPIVVAINKCDKPAAD--PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~~~~~~i-~----~~~~~~~piIvViNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|+++....+....| . .....+.|+++|+||+|+.... .+....... . ..++++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-------~--~~~~~~~~Sa~~~~gi~ 151 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-------K--HNMLFIETSAKTRDGVQ 151 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-------H--cCCEEEEEecCCCCCHH
Confidence 99874433322222 1 1223578899999999996322 111111111 1 13589999999999999
Q ss_pred hHHHHHHH
Q 008003 342 DLEVALLL 349 (581)
Q Consensus 342 eLl~~L~~ 349 (581)
++++.+..
T Consensus 152 ~~~~~~~~ 159 (161)
T cd01863 152 QAFEELVE 159 (161)
T ss_pred HHHHHHHH
Confidence 99998865
No 162
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=3.1e-19 Score=193.97 Aligned_cols=150 Identities=22% Similarity=0.330 Sum_probs=121.9
Q ss_pred EEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc--------chhhHHHhhccccc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH--------AAFSAMRKRGAAVT 261 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~--------~~~~~~~~~~~~~a 261 (581)
+|+|+|+||||||||+|+|.+.+. .+...+|+|++.....+.+ ++..+.+|||||+ +.+......++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 489999999999999999998764 4667889999998888888 7889999999997 33445556788999
Q ss_pred cEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 262 DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 262 DivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|++++|+|+.++....+.+....+...++|+++|+||+|+..... ....+...+ ..+++++||++|.|++
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--~~~~~~~lg--------~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--VAAEFYSLG--------FGEPIPISAEHGRGIG 149 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--cHHHHHhcC--------CCCeEEEeCCcCCChH
Confidence 999999999999888888888888888999999999999864321 111111111 2268999999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
+|++++....
T Consensus 150 ~ll~~i~~~l 159 (429)
T TIGR03594 150 DLLDAILELL 159 (429)
T ss_pred HHHHHHHHhc
Confidence 9999987643
No 163
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=4.6e-19 Score=169.83 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=110.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||++++.+..+.....+++..++. ..+.++ ....+.+|||||++.|..++..+++.+|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 58999999999999999999998887666666554443 334442 3367889999999999999999999999999999
Q ss_pred eccCCCChhHH-HHH-HHHh--hcCCCEEEEEeCCCCCCCChh-------hHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 269 AADDGVMPQTL-EAI-AHAN--AANVPIVVAINKCDKPAADPE-------RVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 269 Da~~g~~~~~~-~~i-~~~~--~~~~piIvViNK~Dl~~~~~~-------~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
|.++....+.. ..| ..+. ..+.|+++|+||+||...... +......+.+..+....+..+++++||++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~ 160 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS 160 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence 99885443331 222 2222 246899999999999532100 000001111222222222247999999999
Q ss_pred CC-hhhHHHHHHHH
Q 008003 338 TG-LDDLEVALLLQ 350 (581)
Q Consensus 338 ~g-I~eLl~~L~~~ 350 (581)
+| |+++|..+.+.
T Consensus 161 ~~~v~~~F~~~~~~ 174 (178)
T cd04131 161 EKSVRDIFHVATMA 174 (178)
T ss_pred CcCHHHHHHHHHHH
Confidence 95 99999998763
No 164
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.81 E-value=3.3e-19 Score=168.85 Aligned_cols=153 Identities=22% Similarity=0.174 Sum_probs=106.5
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEec
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa 270 (581)
+|+++|.+|+|||||+++|.+..+.. +.+++..++ ..+.. ++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~--~~~~~-~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV--ETVEY-KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE--EEEEE-CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 58999999999999999999875532 344333333 34555 678999999999999999998999999999999999
Q ss_pred cCCCC-hhHHHHHHHHh----hcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 271 DDGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 271 ~~g~~-~~~~~~i~~~~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
++... ......+..+. ..+.|+++|+||+|+... +.++....+...... ......++++||++|.|+++++
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLC---CGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCcccc---CCCcEEEEeCcCCCCCCHHHHH
Confidence 87421 12222222222 234799999999999643 222222222111100 0112468899999999999999
Q ss_pred HHHHHH
Q 008003 345 VALLLQ 350 (581)
Q Consensus 345 ~~L~~~ 350 (581)
++|...
T Consensus 154 ~~l~~~ 159 (169)
T cd04158 154 DWLSRQ 159 (169)
T ss_pred HHHHHH
Confidence 999753
No 165
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.81 E-value=8.1e-19 Score=164.41 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=109.1
Q ss_pred CEEEEEccCCCCcchHhhhhhcc--cccccccCceeEeeeeEEEeec--CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT--SLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~--~~~~~~~~g~T~d~~~~~~~~~--~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+|+++|.+|+|||||+++|... .+.....+++..++....+... ....+.+|||||++.+..++...+..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 47999999999999999999864 4555555655566555555442 3478999999999999999999999999999
Q ss_pred EEEeccCCCChhHHHH-HHHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 266 LVVAADDGVMPQTLEA-IAHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~-i~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
+|+|+++.......+. +..+.. .+.|+++|+||+|+.+...... ...... ... ...+++++||++|.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~---~~~--~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTD-AQAQAF---AQA--NQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCH-HHHHHH---HHH--cCCeEEEEeCCCCCChHH
Confidence 9999987432222221 222222 4689999999999954321010 000000 011 125799999999999999
Q ss_pred HHHHHHHH
Q 008003 343 LEVALLLQ 350 (581)
Q Consensus 343 Ll~~L~~~ 350 (581)
+++.|.+.
T Consensus 155 l~~~l~~~ 162 (164)
T cd04101 155 PFESLARA 162 (164)
T ss_pred HHHHHHHH
Confidence 99999764
No 166
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=6.7e-19 Score=169.59 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=111.6
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
++|+++|++|+|||||+++|.+..+...+.++++.++....+..+ ....+.+|||||++.+..++...++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 479999999999999999999988866556666666655555552 2357789999999999999999999999999999
Q ss_pred eccCCCChhH----HHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~~~----~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|+++...... ...+......+.|+++|+||+|+.... ..... .+. .. ..++++++||++|.|++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~-~~~------~~--~~~~~~evSa~~~~~i~ 151 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAK-SFC------DS--LNIPFFETSAKQSINVE 151 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHH-HHH------HH--cCCeEEEEeCCCCCCHH
Confidence 9987432222 222222223457899999999996321 11111 111 11 12479999999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
+++++|....
T Consensus 152 ~~f~~l~~~~ 161 (188)
T cd04125 152 EAFILLVKLI 161 (188)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 167
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.81 E-value=2.8e-19 Score=170.55 Aligned_cols=159 Identities=19% Similarity=0.228 Sum_probs=108.1
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|.+|+|||||+.++....+...+.+++. +.....+..+ ....+.+|||||++.|..++..+++.+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 5899999999999999999998877655555443 3323333342 2367889999999999999999999999999999
Q ss_pred eccCCCChhHH-HHH-HHHh--hcCCCEEEEEeCCCCCCCCh--hhHHhh-----hhhccchhhhcCCcceEEEEeccCC
Q 008003 269 AADDGVMPQTL-EAI-AHAN--AANVPIVVAINKCDKPAADP--ERVKNQ-----LGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 269 Da~~g~~~~~~-~~i-~~~~--~~~~piIvViNK~Dl~~~~~--~~~~~~-----l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
|+++....+.. ..| ..+. ..+.|+++|+||+|+..... +..... ..+.+..+....+..++++|||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 99885433332 112 2121 23689999999999953211 111100 0011111111112358999999999
Q ss_pred CChhhHHHHHHH
Q 008003 338 TGLDDLEVALLL 349 (581)
Q Consensus 338 ~gI~eLl~~L~~ 349 (581)
.|++++++.+..
T Consensus 161 ~~i~~~f~~l~~ 172 (174)
T cd01871 161 KGLKTVFDEAIR 172 (174)
T ss_pred CCHHHHHHHHHH
Confidence 999999998864
No 168
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.80 E-value=5.9e-19 Score=172.23 Aligned_cols=150 Identities=24% Similarity=0.340 Sum_probs=107.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch---------hhHHHhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA---------FSAMRKRGA 258 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~---------~~~~~~~~~ 258 (581)
.-++|+|+|++|||||||+|+|.+..+.....++.|.+.....+.++++..+.||||||+.+ +.... ..+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~ 118 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEV 118 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence 34799999999999999999999987655555667776666666664445999999999732 22111 235
Q ss_pred ccccEEEEEEeccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEec
Q 008003 259 AVTDIVVLVVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 259 ~~aDivllVvDa~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSA 334 (581)
..+|++++|+|++++...... +.+..+...++|+++|+||+|+....... .. . .....+++++||
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~--~~-------~--~~~~~~~~~~Sa 187 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE--ER-------L--EAGRPDAVFISA 187 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH--HH-------h--hcCCCceEEEEc
Confidence 689999999999986544332 33333333468999999999996432211 00 0 112357999999
Q ss_pred cCCCChhhHHHHHHH
Q 008003 335 VKKTGLDDLEVALLL 349 (581)
Q Consensus 335 ktg~gI~eLl~~L~~ 349 (581)
++|.|+++++++|..
T Consensus 188 ~~~~gi~~l~~~L~~ 202 (204)
T cd01878 188 KTGEGLDELLEAIEE 202 (204)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999999865
No 169
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=4.9e-19 Score=192.85 Aligned_cols=149 Identities=23% Similarity=0.346 Sum_probs=118.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcch--------hhHHHhhcccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA--------FSAMRKRGAAV 260 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~--------~~~~~~~~~~~ 260 (581)
++|+|+|++|||||||+|+|.+.+. .+...+|+|++.....+.+ ++..+.+|||||+.. +......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 6899999999999999999998764 4667889999998888887 789999999999876 22234457789
Q ss_pred ccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 261 aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
+|++|+|+|++++....+.+....+...++|+++|+||+|+... +.........+ ...++++||++|.|+
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~--~~~~~~~~~lg--------~~~~~~iSa~~g~gv 150 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE--EADAYEFYSLG--------LGEPYPISAEHGRGI 150 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc--hhhHHHHHhcC--------CCCCEEEEeeCCCCH
Confidence 99999999999988777777777777789999999999997532 11111111111 114799999999999
Q ss_pred hhHHHHHHH
Q 008003 341 DDLEVALLL 349 (581)
Q Consensus 341 ~eLl~~L~~ 349 (581)
++|++.|..
T Consensus 151 ~~l~~~I~~ 159 (435)
T PRK00093 151 GDLLDAILE 159 (435)
T ss_pred HHHHHHHHh
Confidence 999999976
No 170
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.80 E-value=7.2e-19 Score=163.56 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=110.3
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....++++.+.....+... ....+.+|||||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 479999999999999999999887765555555555555555442 2357899999999999999988899999999999
Q ss_pred eccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|++++...+.. +.+......++|+++|+||+|+..... +....... .. ..+++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-------~~--~~~~~~~s~~~~~gi~ 151 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAK-------SV--GAKHFETSAKTGKGIE 151 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH-------Hc--CCEEEEEeCCCCCCHH
Confidence 99875432222 222333334689999999999964221 11111111 11 3478999999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
+++++|...
T Consensus 152 ~~~~~l~~~ 160 (162)
T cd04123 152 ELFLSLAKR 160 (162)
T ss_pred HHHHHHHHH
Confidence 999998753
No 171
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.80 E-value=6.6e-19 Score=166.67 Aligned_cols=154 Identities=23% Similarity=0.217 Sum_probs=107.9
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEec
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa 270 (581)
+|+++|.+|+|||||+++|.+. +.....+++. .....+.. ++..+.+|||||++.+..++..+++.+|++++|+|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g--~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVG--FTPTKLRL-DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCccc--ceEEEEEE-CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999876 3333333222 22334555 678999999999999999999999999999999999
Q ss_pred cCCCChh-HHHHHHHHhh----cCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCC------C
Q 008003 271 DDGVMPQ-TLEAIAHANA----ANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKK------T 338 (581)
Q Consensus 271 ~~g~~~~-~~~~i~~~~~----~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg------~ 338 (581)
++....+ ....+..+.. .++|+++|+||+|+.+.. ..++...+....+ ..+.+..+++++|||++| .
T Consensus 77 s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~-~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 77 SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKL-VNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccc-cCCCCceEEEEEeEceeCCCCcccc
Confidence 8743222 2223333221 478999999999997543 3333333221111 111223457899999998 8
Q ss_pred ChhhHHHHHHH
Q 008003 339 GLDDLEVALLL 349 (581)
Q Consensus 339 gI~eLl~~L~~ 349 (581)
|+++.++||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999853
No 172
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.80 E-value=6e-19 Score=164.60 Aligned_cols=152 Identities=23% Similarity=0.276 Sum_probs=107.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|.+|+|||||+++|....+.....+. +.+........+ .+..+.+|||||+..+..++..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCc-chhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 47999999999999999999987765443333 333333333332 3467999999999999999999999999999999
Q ss_pred eccCCCC----hhHHHHHHHH-hhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 269 AADDGVM----PQTLEAIAHA-NAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 269 Da~~g~~----~~~~~~i~~~-~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|.++... ..+...+... ...++|+++|+||+|+.... ........ ..+ ..+++++||++|.|+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~~~gi 150 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-------RQW--GVPYVETSAKTRQNV 150 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-------HHh--CCeEEEeeCCCCCCH
Confidence 9886321 1222222222 12578999999999996521 11111111 111 248999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++++++|....
T Consensus 151 ~~l~~~l~~~~ 161 (164)
T cd04139 151 EKAFYDLVREI 161 (164)
T ss_pred HHHHHHHHHHH
Confidence 99999997644
No 173
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.80 E-value=8.3e-19 Score=168.76 Aligned_cols=159 Identities=22% Similarity=0.222 Sum_probs=112.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.+.++|+++|.+|+|||||+++|.+..+.. ..+ |.+.....+.. ++..+.+|||||+..+...+..++..+|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQP--TQHPTSEELAI-GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCC--ccccceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 456899999999999999999999876542 222 33333344555 67899999999999999999999999999999
Q ss_pred EEeccCCCC-hhHHHHHHHHh----hcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchh---hhcCCcceEEEEeccCC
Q 008003 267 VVAADDGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLEL---EDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 267 VvDa~~g~~-~~~~~~i~~~~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~---~~~~~~~~ii~iSAktg 337 (581)
|+|+++... ......+..+. ..++|+++|+||+|+... +.+++...+.-..... ........+++|||++|
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~ 170 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRR 170 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccC
Confidence 999987421 12222222221 257899999999999643 3444444332111100 00113457999999999
Q ss_pred CChhhHHHHHHH
Q 008003 338 TGLDDLEVALLL 349 (581)
Q Consensus 338 ~gI~eLl~~L~~ 349 (581)
+|+++++++|..
T Consensus 171 ~g~~~~~~wl~~ 182 (184)
T smart00178 171 MGYGEGFKWLSQ 182 (184)
T ss_pred CChHHHHHHHHh
Confidence 999999999964
No 174
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.80 E-value=5.1e-19 Score=175.55 Aligned_cols=158 Identities=30% Similarity=0.364 Sum_probs=114.2
Q ss_pred EEEEEccCCCCcchHhhhhhccccccc--------------ccCceeEeeee------------------------EEEe
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAK--------------EAGGITQHMGA------------------------FVVG 232 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~--------------~~~g~T~d~~~------------------------~~~~ 232 (581)
+|+++|++++|||||+++|....+... ...|.|..+.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999975433211 01233332111 1122
Q ss_pred ecCCeEEEEEeCCCcchhhHHHhhccc--cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC-hhhH
Q 008003 233 MSTGASITFLDTPGHAAFSAMRKRGAA--VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD-PERV 309 (581)
Q Consensus 233 ~~~g~~i~liDTpG~~~~~~~~~~~~~--~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~-~~~~ 309 (581)
. .+..++|+|||||++|...+.+++. .+|++++|+|++.+...++.+++..+...++|+++|+||+|+.+.+ ....
T Consensus 81 ~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~ 159 (224)
T cd04165 81 K-SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQET 159 (224)
T ss_pred e-CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHH
Confidence 2 5788999999999999888877775 7999999999999999999999999999999999999999986432 1222
Q ss_pred Hhhhhhccc----h-----------------hhhcCCcceEEEEeccCCCChhhHHHHHHH
Q 008003 310 KNQLGAEGL----E-----------------LEDWGGKVQVVEVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 310 ~~~l~~~~~----~-----------------~~~~~~~~~ii~iSAktg~gI~eLl~~L~~ 349 (581)
...+..... . ...+...+|+|++||.+|+|+++|...|..
T Consensus 160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 222221110 0 012334569999999999999999998864
No 175
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.80 E-value=7.7e-19 Score=169.70 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=108.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccc-cccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~-~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.+|+++|++|+|||||+++|.+..+.. .+.+++..++....+.. ++ ..+.+|||||++.+..++..+++.+|++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 479999999999999999999988764 34444444444444555 34 466799999999999888888999999999
Q ss_pred EEeccCCCChhHH-HHHHHHh--hcCCCEEEEEeCCCCCCCCh--hhH-HhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQTL-EAIAHAN--AANVPIVVAINKCDKPAADP--ERV-KNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~i~~~~--~~~~piIvViNK~Dl~~~~~--~~~-~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|+++....+.. ..+..+. ..+.|+++|+||+|+..... ..+ ....... ...+ ..+++++||++|.|+
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~---~~~~--~~~~~~~Sa~~~~gv 154 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDF---ADEI--KAQHFETSSKTGQNV 154 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHH---HHHc--CCeEEEEeCCCCCCH
Confidence 9999874322221 2222222 23689999999999854321 010 0111111 0111 257899999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++|+++|....
T Consensus 155 ~~l~~~i~~~~ 165 (193)
T cd04118 155 DELFQKVAEDF 165 (193)
T ss_pred HHHHHHHHHHH
Confidence 99999998755
No 176
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.80 E-value=8.6e-19 Score=161.73 Aligned_cols=151 Identities=22% Similarity=0.273 Sum_probs=109.1
Q ss_pred EEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEecc
Q 008003 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAAD 271 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~ 271 (581)
|+++|++|+|||||+++|.+..+.....+++..++. .+.. ++..+.+|||||++.+..++..++..+|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTK-GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEE-CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 799999999999999999998877666665555443 3344 5689999999999999999999999999999999998
Q ss_pred CCCC-hhHHHHHHHHh----hcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHH
Q 008003 272 DGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (581)
Q Consensus 272 ~g~~-~~~~~~i~~~~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~ 345 (581)
+... .+....+..+. ..++|+++|+||+|+.+... ......+ .... .....++++++||++|.|++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQM---NLKS-ITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHh---Cccc-ccCCceEEEEEEeccCCChHHHHH
Confidence 6321 12222232222 24789999999999865422 1111111 1110 011235789999999999999999
Q ss_pred HHHH
Q 008003 346 ALLL 349 (581)
Q Consensus 346 ~L~~ 349 (581)
+|..
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9864
No 177
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=8e-19 Score=174.78 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=112.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
..+|+++|++|||||||+++|....+...+.|++..++.. .+..+ ....+.||||||++.|..++..+++.||++|+|
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 4689999999999999999999988877666766555432 34442 346799999999999999999999999999999
Q ss_pred EeccCCCChhH-HHH-HHHHh--hcCCCEEEEEeCCCCCCCChhh-------HHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 268 VAADDGVMPQT-LEA-IAHAN--AANVPIVVAINKCDKPAADPER-------VKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 268 vDa~~g~~~~~-~~~-i~~~~--~~~~piIvViNK~Dl~~~~~~~-------~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
||+++....+. ... +..+. ..+.|+|+|+||+||....... ......+.+..+....+..++++|||++
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt 171 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT 171 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99998543332 111 22222 2468999999999995311000 0000011112222211222689999999
Q ss_pred CC-ChhhHHHHHHHHH
Q 008003 337 KT-GLDDLEVALLLQA 351 (581)
Q Consensus 337 g~-gI~eLl~~L~~~~ 351 (581)
|+ |++++|+.+....
T Consensus 172 g~~~V~e~F~~~~~~~ 187 (232)
T cd04174 172 SEKSIHSIFRSASLLC 187 (232)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 98 8999999987643
No 178
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.80 E-value=3.9e-19 Score=166.58 Aligned_cols=152 Identities=21% Similarity=0.226 Sum_probs=106.5
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|.+|+|||||++++....+.....+++ .+.....+.. ++ ..+.||||||++.|..++..+++.+|++++|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch-hheEEEEEEE-CCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 589999999999999999999887765444433 3343444544 33 4678999999999999999999999999999
Q ss_pred EeccCCCChhHH-HHHHHHh----hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 268 VAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 268 vDa~~g~~~~~~-~~i~~~~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
+|.++....+.. +.+..+. ..++|+++|+||+|+........ ...... ...+ ..+++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSS-AEGRAL---AEEW--GCPFMETSAKSKTMVNE 153 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCH-HHHHHH---HHHh--CCEEEEecCCCCCCHHH
Confidence 999884322222 2222222 24789999999999853211000 000110 0112 24899999999999999
Q ss_pred HHHHHHH
Q 008003 343 LEVALLL 349 (581)
Q Consensus 343 Ll~~L~~ 349 (581)
++++|..
T Consensus 154 l~~~l~~ 160 (163)
T cd04176 154 LFAEIVR 160 (163)
T ss_pred HHHHHHH
Confidence 9999875
No 179
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.80 E-value=4.7e-19 Score=167.98 Aligned_cols=158 Identities=19% Similarity=0.278 Sum_probs=107.3
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+...+.+++...+ ...+.++ ....+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999877655555443332 2233442 2357899999999999888888899999999999
Q ss_pred eccCCCChhHH-HHH-HHHh--hcCCCEEEEEeCCCCCCCChhhHHhhhh---------hccchhhhcCCcceEEEEecc
Q 008003 269 AADDGVMPQTL-EAI-AHAN--AANVPIVVAINKCDKPAADPERVKNQLG---------AEGLELEDWGGKVQVVEVSAV 335 (581)
Q Consensus 269 Da~~g~~~~~~-~~i-~~~~--~~~~piIvViNK~Dl~~~~~~~~~~~l~---------~~~~~~~~~~~~~~ii~iSAk 335 (581)
|+++....+.. ..| ..+. ..++|+++|+||+|+..... ....+. ..+..+....+..++++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH--TRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh--hhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 99864222222 111 1122 24789999999999864311 110010 011111111123479999999
Q ss_pred CCCChhhHHHHHHHH
Q 008003 336 KKTGLDDLEVALLLQ 350 (581)
Q Consensus 336 tg~gI~eLl~~L~~~ 350 (581)
+|.|+++++++|...
T Consensus 159 ~~~~v~~lf~~l~~~ 173 (175)
T cd01870 159 TKEGVREVFEMATRA 173 (175)
T ss_pred cCcCHHHHHHHHHHH
Confidence 999999999999764
No 180
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.80 E-value=1.4e-18 Score=164.44 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=111.4
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhh-HHHhhccccccEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFS-AMRKRGAAVTDIVVL 266 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~-~~~~~~~~~aDivll 266 (581)
-.+|+++|++|+|||||+++|....+.....++++.++....+.++ ....+.+|||||++.|. .++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4689999999999999999999887766566666666665556552 23689999999999887 467788899999999
Q ss_pred EEeccCCCChhHHHHHH-HHh----hcCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEEEeccC---
Q 008003 267 VVAADDGVMPQTLEAIA-HAN----AANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVK--- 336 (581)
Q Consensus 267 VvDa~~g~~~~~~~~i~-~~~----~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt--- 336 (581)
|+|++++...+....|. .+. ..++|+++|+||+|+..... ......+. .. ...+++++||++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~e~Sa~~~~~ 153 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA------DA--HSMPLFETSAKDPSE 153 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH------HH--cCCcEEEEeccCCcC
Confidence 99999855444433332 222 24689999999999853211 11111111 11 135899999999
Q ss_pred CCChhhHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQ 350 (581)
Q Consensus 337 g~gI~eLl~~L~~~ 350 (581)
+.|+++++..+...
T Consensus 154 ~~~i~~~f~~l~~~ 167 (170)
T cd04115 154 NDHVEAIFMTLAHK 167 (170)
T ss_pred CCCHHHHHHHHHHH
Confidence 88899998888653
No 181
>PLN03110 Rab GTPase; Provisional
Probab=99.80 E-value=1.5e-18 Score=171.51 Aligned_cols=156 Identities=16% Similarity=0.199 Sum_probs=116.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
...+|+++|++|+|||||+++|.+..+.....++++.++....+.++ ....+.||||||++.|..++..+++.+|++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 34799999999999999999999988776666777777766666653 23689999999999999999999999999999
Q ss_pred EEeccCCCChhHHH----HHHHHhhcCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQTLE----AIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~~~----~i~~~~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|+++....+... .+......++|+++|+||+|+..... ......+.. . ..++++++||++|.|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~------~--~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE------K--EGLSFLETSALEATNV 162 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHH------H--cCCEEEEEeCCCCCCH
Confidence 99998754333322 22222234789999999999853211 111111111 1 1358999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++++++|....
T Consensus 163 ~~lf~~l~~~i 173 (216)
T PLN03110 163 EKAFQTILLEI 173 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999997644
No 182
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.79 E-value=8.4e-19 Score=176.60 Aligned_cols=155 Identities=25% Similarity=0.360 Sum_probs=110.6
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|.+|+|||||+++|.+..+...+.+++ .++....+.+ ++ +.+.||||||++.|..++..++..+|++|+|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi-~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-EDFHRKLYSI-RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCh-hHhEEEEEEE-CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 379999999999999999999887765555543 3554445555 34 6788999999999999888889999999999
Q ss_pred EeccCCCChhHH----HHHHHH---------hhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEE
Q 008003 268 VAADDGVMPQTL----EAIAHA---------NAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVE 331 (581)
Q Consensus 268 vDa~~g~~~~~~----~~i~~~---------~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~ 331 (581)
||+++....+.. +.+... ...++|+|+|+||+|+.... .++..+.+. .....++++
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~--------~~~~~~~~e 150 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG--------GDENCAYFE 150 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH--------hcCCCEEEE
Confidence 999974322221 222211 11368999999999996421 111111111 011357999
Q ss_pred EeccCCCChhhHHHHHHHHHHHh
Q 008003 332 VSAVKKTGLDDLEVALLLQAEMM 354 (581)
Q Consensus 332 iSAktg~gI~eLl~~L~~~~~~~ 354 (581)
+||++|.|+++++++|...+..+
T Consensus 151 vSAktg~gI~elf~~L~~~~~~p 173 (247)
T cd04143 151 VSAKKNSNLDEMFRALFSLAKLP 173 (247)
T ss_pred EeCCCCCCHHHHHHHHHHHhccc
Confidence 99999999999999998866433
No 183
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=6e-19 Score=167.34 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=111.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDI 263 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDi 263 (581)
++..+|+++|.+|+|||||+++|.+..+. ..+.+++..++....+.+ +| ..+.+|||+|.+.+..++..++..+|+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 45679999999999999999999998877 555665555554444555 34 578899999999998888888999999
Q ss_pred EEEEEeccCCCChhHH-HHHHHHh-hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 264 VVLVVAADDGVMPQTL-EAIAHAN-AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 264 vllVvDa~~g~~~~~~-~~i~~~~-~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+++|+|+++....+.. +.+..+. ..++|+++|+||+|+.+.... ......+. ...++ ...++++||++|.|++
T Consensus 81 ~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~---~~~~~-~~~~~~~Sa~~~~~v~ 155 (169)
T cd01892 81 ACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQR-YEVQPDEF---CRKLG-LPPPLHFSSKLGDSSN 155 (169)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccc-cccCHHHH---HHHcC-CCCCEEEEeccCccHH
Confidence 9999999874222221 2222221 236899999999999532110 00000000 01111 1146899999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
++++.|...+
T Consensus 156 ~lf~~l~~~~ 165 (169)
T cd01892 156 ELFTKLATAA 165 (169)
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 184
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=9.1e-19 Score=165.16 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=104.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEee-cCCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGM-STGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~-~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+... .+.++.+.. ..... ..+..+.+|||||++.+...+...+..+|++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEIT-IPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccceE-eeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 3799999999999999999998877543 332222221 11111 14578999999999888877777889999999999
Q ss_pred eccCCCChhHH-HHH-HHHh--hcCCCEEEEEeCCCCCCCChh-hHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 269 AADDGVMPQTL-EAI-AHAN--AANVPIVVAINKCDKPAADPE-RVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 269 Da~~g~~~~~~-~~i-~~~~--~~~~piIvViNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
|++++...+.. ..| ..+. ..+.|+++|+||+|+.+.... .....+... ...+....+++++||++|.|++++
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~Sa~~~~~v~~l 155 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPI---MNEFREIETCVECSAKTLINVSEV 155 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHH---HHHHhcccEEEEeccccccCHHHH
Confidence 99875443332 112 2222 247899999999999653321 111111110 111111137999999999999999
Q ss_pred HHHHHHH
Q 008003 344 EVALLLQ 350 (581)
Q Consensus 344 l~~L~~~ 350 (581)
++.+...
T Consensus 156 f~~~~~~ 162 (166)
T cd01893 156 FYYAQKA 162 (166)
T ss_pred HHHHHHH
Confidence 9988764
No 185
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.79 E-value=6.1e-19 Score=166.59 Aligned_cols=155 Identities=24% Similarity=0.291 Sum_probs=107.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|.+|+|||||+++|.+..+.....+.+. +.....+.++ ....+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 5799999999999999999998876554444333 3323333442 2367899999999999999999999999999999
Q ss_pred eccCCCChhH----HHHHHH-HhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 269 AADDGVMPQT----LEAIAH-ANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 269 Da~~g~~~~~----~~~i~~-~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
|.++....+. .+.+.. ....+.|+++++||+|+....... ....... ...+ +..+++++||++|.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~-~~~~~~~---~~~~-~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVS-REDGVSL---SQQW-GNVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccC-HHHHHHH---HHHc-CCceEEEeeCCCCCCHHHH
Confidence 9987432222 222222 223478999999999996432111 0011110 1112 2358999999999999999
Q ss_pred HHHHHHH
Q 008003 344 EVALLLQ 350 (581)
Q Consensus 344 l~~L~~~ 350 (581)
+++|...
T Consensus 156 f~~i~~~ 162 (168)
T cd04177 156 FIDLVRQ 162 (168)
T ss_pred HHHHHHH
Confidence 9999764
No 186
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.79 E-value=1.3e-18 Score=166.64 Aligned_cols=150 Identities=23% Similarity=0.325 Sum_probs=106.5
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccc--cccccCceeEeeeeEEEeecCCeEEEEEeCCCcc----------hhhHH
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA----------AFSAM 253 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~--~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~----------~~~~~ 253 (581)
..+.++|+|+|++|+|||||+|+|.+... ..+..+|+|+++..+.. + ..+.||||||+. .+..+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 35678999999999999999999998752 33456778887654443 2 369999999952 23333
Q ss_pred Hhhccc---cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEE
Q 008003 254 RKRGAA---VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVV 330 (581)
Q Consensus 254 ~~~~~~---~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii 330 (581)
...+++ .+|++++|+|++.+....+...+..+...++|+++++||+|+.... .....+.+....+...+...+++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~i~~~l~~~~~~~~v~ 168 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKS--ELNKQLKKIKKALKKDADDPSVQ 168 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHH--HHHHHHHHHHHHHhhccCCCceE
Confidence 333433 4689999999998888888777777777889999999999996432 11111211111222223345899
Q ss_pred EEeccCCCChh
Q 008003 331 EVSAVKKTGLD 341 (581)
Q Consensus 331 ~iSAktg~gI~ 341 (581)
++||++|+|++
T Consensus 169 ~~Sa~~g~gi~ 179 (179)
T TIGR03598 169 LFSSLKKTGID 179 (179)
T ss_pred EEECCCCCCCC
Confidence 99999999985
No 187
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.79 E-value=5.9e-19 Score=166.17 Aligned_cols=159 Identities=19% Similarity=0.259 Sum_probs=106.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
++|+++|++|+|||||+++|.+..+.....+.+.... ......+ ....+.+|||||++.+...+...++.+|++++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 4899999999999999999999887554444443222 2233331 3467999999999988888888889999999999
Q ss_pred eccCCCChhHH--HHHHHHh--hcCCCEEEEEeCCCCCCCChhhHH-----hh-hhhccchhhhcCCcceEEEEeccCCC
Q 008003 269 AADDGVMPQTL--EAIAHAN--AANVPIVVAINKCDKPAADPERVK-----NQ-LGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 269 Da~~g~~~~~~--~~i~~~~--~~~~piIvViNK~Dl~~~~~~~~~-----~~-l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
|+++....... ..+..+. ..+.|+++|+||+|+......... .. ............+..+++++||++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 99873322211 1122222 236899999999999654321100 00 00111111111223489999999999
Q ss_pred ChhhHHHHHHH
Q 008003 339 GLDDLEVALLL 349 (581)
Q Consensus 339 gI~eLl~~L~~ 349 (581)
|+++++++|..
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999998864
No 188
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=1.1e-18 Score=174.60 Aligned_cols=159 Identities=30% Similarity=0.375 Sum_probs=123.2
Q ss_pred EEEEEccCCCCcchHhhhhhccccc------------------ccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLV------------------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~------------------~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~ 252 (581)
+|+++||+|+|||||+++|+...-. .....|+|.+.....+.+ ++..++|||||||.+|..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchHH
Confidence 5899999999999999999753211 012346666777777777 789999999999999999
Q ss_pred HHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cc-------------
Q 008003 253 MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL------------- 318 (581)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~------------- 318 (581)
.+..+++.+|++++|+|++++...++...+..+...++|+++++||+|+...+.++....+... +.
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~ 159 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPN 159 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeee
Confidence 9999999999999999999999888888888888889999999999999865544433332211 00
Q ss_pred -h--------------------hh---------------------hcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 319 -E--------------------LE---------------------DWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 319 -~--------------------~~---------------------~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
. ++ ..+.-+|++..||.++.|+..|++.|...
T Consensus 160 ~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~ 233 (237)
T cd04168 160 ICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKL 233 (237)
T ss_pred eeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHh
Confidence 0 00 01234578888999999999999999764
No 189
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.79 E-value=1.6e-18 Score=159.73 Aligned_cols=150 Identities=18% Similarity=0.209 Sum_probs=109.9
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
++|+++|++|+|||||+++|.+..+.....++++.+.....+..+ ....+.+|||||++.+.......++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 479999999999999999999988776656656666655555542 3478899999999999999999999999999999
Q ss_pred eccCCCChhHH-HHHHHHhh---cCCCEEEEEeCCCCCCC---ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMPQTL-EAIAHANA---ANVPIVVAINKCDKPAA---DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~~~~-~~i~~~~~---~~~piIvViNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|+++....... ..+..+.. .+.|+++++||+|+... ..+....... . ...+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~--~~~~~~~~sa~~~~~i~ 151 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAK-------E--NGLLFFETSAKTGENVE 151 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHH-------H--cCCeEEEEecCCCCCHH
Confidence 99873322222 22222222 35899999999999521 1122211111 1 23589999999999999
Q ss_pred hHHHHHH
Q 008003 342 DLEVALL 348 (581)
Q Consensus 342 eLl~~L~ 348 (581)
+++++|.
T Consensus 152 ~~~~~i~ 158 (159)
T cd00154 152 ELFQSLA 158 (159)
T ss_pred HHHHHHh
Confidence 9999875
No 190
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.79 E-value=1.2e-18 Score=169.98 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=108.5
Q ss_pred EccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCC
Q 008003 195 MGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG 273 (581)
Q Consensus 195 vG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g 273 (581)
+|++|||||||++++....+.....+++..++....+.++ ....+.||||||++.|..++..+++.+|++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999877765556655555555555442 347899999999999999999999999999999999985
Q ss_pred CChhHHHHH-HHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 274 VMPQTLEAI-AHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 274 ~~~~~~~~i-~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
...+....| ..+.. .++|+++|+||+|+....... +.+ .+.. ...+++++|||++|.||+++|++|...
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~--~~~-----~~~~-~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKA--KSI-----TFHR-KKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCH--HHH-----HHHH-HcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 443322222 22222 478999999999985321110 111 1111 124589999999999999999999875
Q ss_pred H
Q 008003 351 A 351 (581)
Q Consensus 351 ~ 351 (581)
.
T Consensus 153 i 153 (200)
T smart00176 153 L 153 (200)
T ss_pred H
Confidence 4
No 191
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=1.6e-18 Score=170.68 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=111.9
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC--CeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST--GASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~--g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|++|+|||||+++|.+..+.....++++.++....+.+.+ ...+.+|||||++.+..++..+++.+|++++|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 82 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLV 82 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEE
Confidence 6899999999999999999999887665666666676666665533 35789999999999999999999999999999
Q ss_pred EeccCCCChhHHHH-HHHH----hhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 268 VAADDGVMPQTLEA-IAHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 268 vDa~~g~~~~~~~~-i~~~----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
+|+++....+.... +..+ .....|+++|+||+|+...... ........ ...+ ..+++++||++|.|+++
T Consensus 83 ~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v-~~~~~~~~---~~~~--~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 83 FDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQV-TREEAEKL---AKDL--GMKYIETSARTGDNVEE 156 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccccc-CHHHHHHH---HHHh--CCEEEEEeCCCCCCHHH
Confidence 99987432222211 1211 1234678999999999642110 00111111 1112 25899999999999999
Q ss_pred HHHHHHHHH
Q 008003 343 LEVALLLQA 351 (581)
Q Consensus 343 Ll~~L~~~~ 351 (581)
++++|....
T Consensus 157 ~f~~l~~~~ 165 (211)
T cd04111 157 AFELLTQEI 165 (211)
T ss_pred HHHHHHHHH
Confidence 999998643
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=1e-18 Score=200.62 Aligned_cols=161 Identities=22% Similarity=0.282 Sum_probs=124.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcc----------hhhHHH-h
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA----------AFSAMR-K 255 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~----------~~~~~~-~ 255 (581)
..++|+++|+||+|||||+|+|.+... .+++.+|||++.....+.+ ++..+.||||||+. .|..++ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 458999999999999999999998874 4677899999998887877 78889999999953 233332 2
Q ss_pred hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEec
Q 008003 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSA 334 (581)
.+++.+|++++|+|++++...++...+..+...++|+|+|+||+|+.+... +.....+.. .+. .....+++++||
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~---~l~-~~~~~~ii~iSA 603 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKT---EFD-RVTWARRVNLSA 603 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHH---hcc-CCCCCCEEEEEC
Confidence 457899999999999999989888888877778999999999999964322 111111111 111 112357899999
Q ss_pred cCCCChhhHHHHHHHHHHH
Q 008003 335 VKKTGLDDLEVALLLQAEM 353 (581)
Q Consensus 335 ktg~gI~eLl~~L~~~~~~ 353 (581)
++|.|+++|++.+....+.
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876543
No 193
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.79 E-value=1e-18 Score=165.28 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=106.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.+..+|+++|++|+|||||+++|.+..+.. ..+ |..+....+.. ++..+.+|||||+..+...+...++.+|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~--t~g~~~~~i~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITP--TQGFNIKTVQS-DGFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCC--CCCcceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 347899999999999999999999865432 111 22222234444 67899999999999998888888999999999
Q ss_pred EEeccCCCC-hhHHHHH----HHHhhcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVM-PQTLEAI----AHANAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~-~~~~~~i----~~~~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|+++... ......+ ......++|+++++||+|+.... .+.+...+..... .....+++++||++|+|+
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~Sa~~~~gi 163 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDL----RDRTWHIQACSAKTGEGL 163 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCccc----CCCeEEEEEeECCCCCCH
Confidence 999986321 1112222 22223568999999999996432 2222222211111 111236889999999999
Q ss_pred hhHHHHHHH
Q 008003 341 DDLEVALLL 349 (581)
Q Consensus 341 ~eLl~~L~~ 349 (581)
++++++|.+
T Consensus 164 ~~~~~~l~~ 172 (173)
T cd04155 164 QEGMNWVCK 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999864
No 194
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=7.8e-19 Score=162.90 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=120.9
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
..++.++|+.|||||+|+-+++..++......++..+++...+.++ ...++++|||+||+.|.+.+..+++.|-++|||
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV 85 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV 85 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence 3689999999999999999999999987777788888888888874 347889999999999999999999999999999
Q ss_pred EeccCCCC----hhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 268 VAADDGVM----PQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 268 vDa~~g~~----~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
||.+.... .+|++.+++....+.-+++++||+||.... .+. .+.+..+.+. ....++++||+|++|+++.
T Consensus 86 ydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR--~Vs---~EEGeaFA~e-hgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 86 YDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR--EVS---KEEGEAFARE-HGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc--ccc---HHHHHHHHHH-cCceeehhhhhhhhhHHHH
Confidence 99997432 455555555555677899999999996431 111 1112222221 2346889999999999999
Q ss_pred HHHHHH
Q 008003 344 EVALLL 349 (581)
Q Consensus 344 l~~L~~ 349 (581)
|..+..
T Consensus 160 F~nta~ 165 (216)
T KOG0098|consen 160 FINTAK 165 (216)
T ss_pred HHHHHH
Confidence 887764
No 195
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.79 E-value=8.8e-19 Score=173.53 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=112.7
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|.+|+|||||+++|....+...+.|++..++. ..+.++ ....+.||||+|++.|..++..++..+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 58999999999999999999998887666676654443 334442 3467889999999999999999999999999999
Q ss_pred eccCCCChhHH-HHHHH-H--hhcCCCEEEEEeCCCCCCCChhhHH--------hhhhhccchhhhcCCcceEEEEeccC
Q 008003 269 AADDGVMPQTL-EAIAH-A--NAANVPIVVAINKCDKPAADPERVK--------NQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 269 Da~~g~~~~~~-~~i~~-~--~~~~~piIvViNK~Dl~~~~~~~~~--------~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
|.++....+.. ..|.. + ...+.|+|+|+||+||.... .... ....+.+..+.+..+..++++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch-hhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99985332222 22221 1 12468999999999995421 1000 01112222333333445899999999
Q ss_pred CCC-hhhHHHHHHHHH
Q 008003 337 KTG-LDDLEVALLLQA 351 (581)
Q Consensus 337 g~g-I~eLl~~L~~~~ 351 (581)
+.| |+++|+......
T Consensus 160 ~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 160 SERSVRDVFHVATVAS 175 (222)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 985 999999887643
No 196
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.79 E-value=1.5e-18 Score=165.48 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=109.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....+++.... ...+... .++.+.+|||||++.|...+..++..+|++++|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998877655555333222 2333331 2366899999999999999989999999999999
Q ss_pred eccCCCChhHHHH-HHHH----hhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 269 AADDGVMPQTLEA-IAHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 269 Da~~g~~~~~~~~-i~~~----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
|.++....+.... +..+ ...+.|+|+|+||+|+....... ....... ...+ ..+++++||++|.|++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVS-TEEGKEL---AESW--GAAFLESSARENENVEEA 154 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccC-HHHHHHH---HHHc--CCeEEEEeCCCCCCHHHH
Confidence 9998443222221 1222 23467999999999996321100 0011111 1112 247999999999999999
Q ss_pred HHHHHHHHHHhh
Q 008003 344 EVALLLQAEMMN 355 (581)
Q Consensus 344 l~~L~~~~~~~~ 355 (581)
+++|........
T Consensus 155 ~~~l~~~~~~~~ 166 (180)
T cd04137 155 FELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHHhc
Confidence 999987665443
No 197
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.79 E-value=1.1e-18 Score=169.83 Aligned_cols=156 Identities=27% Similarity=0.281 Sum_probs=107.7
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
+|+++|++|+|||||+++|.+..+.....+ ++.+.....+.+ ++ ..+.||||||+..|..++..++..+|++++|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~-t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRR-TVEEMHRKEYEV-GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCC-chhhheeEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999998876543333 333444444444 44 67899999999999999989999999999999
Q ss_pred eccCCCChhHHHH----HHH-HhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 269 AADDGVMPQTLEA----IAH-ANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 269 Da~~g~~~~~~~~----i~~-~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
|++++...+.... +.. ....++|+|+|+||+|+............... . ......+++++||++|.|++++
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~--~--~~~~~~~~~~~Sa~~g~gv~~l 154 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALST--V--ELDWNCGFVETSAKDNENVLEV 154 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHH--H--HhhcCCcEEEecCCCCCCHHHH
Confidence 9987432222211 111 12247899999999999642110000011100 0 0112357899999999999999
Q ss_pred HHHHHHHHH
Q 008003 344 EVALLLQAE 352 (581)
Q Consensus 344 l~~L~~~~~ 352 (581)
+++|.....
T Consensus 155 ~~~l~~~~~ 163 (198)
T cd04147 155 FKELLRQAN 163 (198)
T ss_pred HHHHHHHhh
Confidence 999987654
No 198
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=2.6e-18 Score=179.97 Aligned_cols=160 Identities=23% Similarity=0.222 Sum_probs=115.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-------hhHHHhhccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAA 259 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-------~~~~~~~~~~ 259 (581)
+--..|+|+|.||||||||+|+|.+.+..+...++||.+.....+.+.++..+++|||||..+ +.....+.+.
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 345689999999999999999999988777888999999888888775667899999999632 2333445677
Q ss_pred cccEEEEEEeccCCCChhHHHHH-HHHhh-----cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEe
Q 008003 260 VTDIVVLVVAADDGVMPQTLEAI-AHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~~~i-~~~~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iS 333 (581)
.+|++++|+|+++....+..+.| ..+.. .++|+++|+||+|+.+..... ....... .... ..+++++|
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~-~~~~~~~---~~~~--~~~i~~iS 309 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER-EKRAALE---LAAL--GGPVFLIS 309 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH-HHHHHHH---HHhc--CCCEEEEE
Confidence 89999999999864333333322 22222 368999999999996432111 1111110 1111 24799999
Q ss_pred ccCCCChhhHHHHHHHHHH
Q 008003 334 AVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 334 Aktg~gI~eLl~~L~~~~~ 352 (581)
|++++|+++|+++|.....
T Consensus 310 Aktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 310 AVTGEGLDELLRALWELLE 328 (335)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987543
No 199
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.78 E-value=1.8e-18 Score=171.96 Aligned_cols=242 Identities=21% Similarity=0.218 Sum_probs=154.0
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc------chhh-----
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH------AAFS----- 251 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~------~~~~----- 251 (581)
+...+...|+++|.||+|||||.|.+.+.++ +++....||++-....+.. +...+.|+||||. +.+.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHh
Confidence 4456789999999999999999999999876 4566677787777766665 7899999999992 2221
Q ss_pred -HHHhhccccccEEEEEEeccCC---CChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh--hhHHhhhhh----------
Q 008003 252 -AMRKRGAAVTDIVVLVVAADDG---VMPQTLEAIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGA---------- 315 (581)
Q Consensus 252 -~~~~~~~~~aDivllVvDa~~g---~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~---------- 315 (581)
.....++..||++++|+|+++. ..++.+..+... ..+|-|+|+||+|...... -.....+.+
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 1233578899999999999962 233333333322 3689999999999853210 000001100
Q ss_pred -ccchhhh----------cCCcceEEEEeccCCCChhhHHHHHHHHHHHhhccccc------------------------
Q 008003 316 -EGLELED----------WGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARV------------------------ 360 (581)
Q Consensus 316 -~~~~~~~----------~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~------------------------ 360 (581)
..+...+ |...-.+|++||++|+||++|.++|..++..-+++.+.
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~ 303 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHL 303 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhC
Confidence 0000111 32344689999999999999999999765443333221
Q ss_pred ---CCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccceEEEEEcccCCcccccCCCCcEEEeccCCCCCCC
Q 008003 361 ---DGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAG 437 (581)
Q Consensus 361 ---~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~G 437 (581)
-+.....-+..+.+.. .|.+.+-..+.|. .....+.|+|+.|+.+.+++....-++..+.+.++..
T Consensus 304 pqEVPY~lq~~i~~w~e~~----------~g~l~I~~~v~~p-K~s~~klliGkgG~ki~qI~~~a~~dL~~if~r~V~l 372 (379)
T KOG1423|consen 304 PQEVPYNLQVRILSWKERP----------AGVLFIQVEVVCP-KNSQKKLLIGKGGKKISQIGTRANEDLEDIFQRKVFL 372 (379)
T ss_pred ccccCcceEEEEEEeeecC----------CcEEEEEEEEEcC-CCcceeEEEcCCCccHHHHHHHHHHHHHHHhhceeeE
Confidence 1111122222333322 3455554556553 3333477899999999988877777777776655544
Q ss_pred Ce
Q 008003 438 DD 439 (581)
Q Consensus 438 d~ 439 (581)
.+
T Consensus 373 ~l 374 (379)
T KOG1423|consen 373 RL 374 (379)
T ss_pred EE
Confidence 33
No 200
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.78 E-value=1.6e-18 Score=163.53 Aligned_cols=151 Identities=22% Similarity=0.276 Sum_probs=106.2
Q ss_pred EEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEecc
Q 008003 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAAD 271 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~ 271 (581)
|+++|++|+|||||+++|.+..+.....+++..+ ...+.. .+..+.+|||||++.|..++..+++.+|++++|+|++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~--~~~i~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN--SVAIPT-QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc--eEEEee-CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 7899999999999999999887655544544333 233444 6789999999999999999999999999999999998
Q ss_pred CCCChh-HHHHHHHHh--hcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccC------CCChh
Q 008003 272 DGVMPQ-TLEAIAHAN--AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVK------KTGLD 341 (581)
Q Consensus 272 ~g~~~~-~~~~i~~~~--~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt------g~gI~ 341 (581)
+..... ....+..+. ..++|+++|+||+|+.... ...+...+....+. . ...++++++||++ ++|++
T Consensus 79 ~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~-~--~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 79 DSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIA-R--GRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhc-C--CCceEEEEeeecCCCChhHHHHHH
Confidence 743221 222222222 2578999999999996532 22222222111111 1 1235788888888 99999
Q ss_pred hHHHHHH
Q 008003 342 DLEVALL 348 (581)
Q Consensus 342 eLl~~L~ 348 (581)
++|+.+.
T Consensus 156 ~~~~~~~ 162 (164)
T cd04162 156 DLLSQLI 162 (164)
T ss_pred HHHHHHh
Confidence 9998875
No 201
>PLN03118 Rab family protein; Provisional
Probab=99.78 E-value=2.4e-18 Score=169.14 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=110.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
..++|+|+|++|+|||||+++|.+..+. ...+.++.+.....+.++ ....+.||||||++.|..++..+++.+|++|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 3579999999999999999999987653 234444445544444442 23678999999999999999999999999999
Q ss_pred EEeccCCCChhHHH-HHHH-Hh----hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQTLE-AIAH-AN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~~~-~i~~-~~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|+++....+... .|.. +. ..+.|+++|+||+|+....... ........ .. ...+++++||++|.|+
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~-~~~~~~~~---~~--~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS-REEGMALA---KE--HGCLFLECSAKTRENV 165 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC-HHHHHHHH---HH--cCCEEEEEeCCCCCCH
Confidence 99998743333222 1211 11 2357899999999996432110 01111110 11 1247999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++++++|....
T Consensus 166 ~~l~~~l~~~~ 176 (211)
T PLN03118 166 EQCFEELALKI 176 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999998755
No 202
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=2.1e-18 Score=198.03 Aligned_cols=153 Identities=23% Similarity=0.325 Sum_probs=120.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcch--------hhHHHhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA--------FSAMRKRGA 258 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~--------~~~~~~~~~ 258 (581)
..++|+|+|+||||||||+|+|++.+. .+...+|+|++.......+ ++..+.||||||... +......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 347899999999999999999998764 5677899999998888777 788999999999653 334455678
Q ss_pred ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 259 ~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
..+|++|+|+|++++....+.+.+..+...++|+|+|+||+|+..... ........+ .. ..+++||++|.
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~~~~~~~lg-------~~-~~~~iSA~~g~ 422 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--DAAEFWKLG-------LG-EPYPISAMHGR 422 (712)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--hHHHHHHcC-------CC-CeEEEECCCCC
Confidence 999999999999998877777777788888999999999999853211 111111111 11 35799999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++|+++|....
T Consensus 423 GI~eLl~~i~~~l 435 (712)
T PRK09518 423 GVGDLLDEALDSL 435 (712)
T ss_pred CchHHHHHHHHhc
Confidence 9999999998754
No 203
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.78 E-value=2.4e-18 Score=163.45 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=107.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
++++++|++|+|||||+.++.+..+.....+ ++.+.....+..++ ...+.+|||||++.|..++..+++.+|++|+|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVP-TAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 4799999999999999999988777654444 44454444454522 357889999999999999988999999999999
Q ss_pred eccCCCChhHH--HHHHHHhh--cCCCEEEEEeCCCCCCCChhhHHhh--------hhhccchhhhcCCcceEEEEeccC
Q 008003 269 AADDGVMPQTL--EAIAHANA--ANVPIVVAINKCDKPAADPERVKNQ--------LGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 269 Da~~g~~~~~~--~~i~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~--------l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
|+++....+.. ..+..+.. .+.|+++|+||+|+..... ..... ..+....+....+..+++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN-VLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh-HHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99985433222 12222222 4689999999999954211 00000 000011111111234799999999
Q ss_pred CCChhhHHHHHHH
Q 008003 337 KTGLDDLEVALLL 349 (581)
Q Consensus 337 g~gI~eLl~~L~~ 349 (581)
|.|++++++.+..
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 204
>PRK11058 GTPase HflX; Provisional
Probab=99.78 E-value=2.1e-18 Score=186.05 Aligned_cols=151 Identities=20% Similarity=0.236 Sum_probs=111.7
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch---------hhHHHhhccc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA---------FSAMRKRGAA 259 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~---------~~~~~~~~~~ 259 (581)
.++|+|+|.||+|||||+|+|.+....+...+++|.|.....+.++++.++.||||||... |.. +...+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~-tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKA-TLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHH-HHHHhh
Confidence 3799999999999999999999988777788899999988788774445899999999632 222 224568
Q ss_pred cccEEEEEEeccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcce-EEEEec
Q 008003 260 VTDIVVLVVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQ-VVEVSA 334 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~-ii~iSA 334 (581)
.||++|+|+|++++...... ..+..+...++|+++|+||+|+......... .. .. ..+ ++++||
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~--~~-------~~--~~~~~v~ISA 344 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRID--RD-------EE--NKPIRVWLSA 344 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHH--HH-------hc--CCCceEEEeC
Confidence 89999999999986543333 3344444457899999999999642111110 00 01 113 588999
Q ss_pred cCCCChhhHHHHHHHHH
Q 008003 335 VKKTGLDDLEVALLLQA 351 (581)
Q Consensus 335 ktg~gI~eLl~~L~~~~ 351 (581)
++|.|+++|+++|....
T Consensus 345 ktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 345 QTGAGIPLLFQALTERL 361 (426)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998754
No 205
>PLN03108 Rab family protein; Provisional
Probab=99.78 E-value=4.2e-18 Score=167.48 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=111.5
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
..+|+|+|++|+|||||+++|.+..+.....++++.++....+.+. ....+.+|||||++.+..++...++.+|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 4789999999999999999999887766555555555554455552 235688999999999999999999999999999
Q ss_pred EeccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 268 VAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 268 vDa~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
+|+++....+.. ..+......+.|+++|+||+|+.... .+...... ..+ .++++++||++|.|+
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-------~~~--~~~~~e~Sa~~~~~v 156 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA-------KEH--GLIFMEASAKTAQNV 156 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHH-------HHc--CCEEEEEeCCCCCCH
Confidence 999874332222 22222223468999999999996431 11111111 111 257999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
+++|+++....
T Consensus 157 ~e~f~~l~~~~ 167 (210)
T PLN03108 157 EEAFIKTAAKI 167 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 206
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.78 E-value=2.6e-18 Score=157.45 Aligned_cols=150 Identities=21% Similarity=0.273 Sum_probs=109.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
++|+++|++|+|||||+++|..........+++|.+.....+.. ++ ..+.+|||||+..+..++......++.++.+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 68999999999999999999998877777888999988877766 56 7899999999999988777777777777777
Q ss_pred EeccCCCC------hhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhh-HHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 268 VAADDGVM------PQTLEAIAHANAANVPIVVAINKCDKPAADPER-VKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 268 vDa~~g~~------~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~-~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
+|....+. ..+...+......+.|+++++||+|+....... ....+. .. ...+++++||++|.|+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~-~~~~~~~~sa~~~~gv 152 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFA-------KL-NGEPIIPLSAETGKNI 152 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHh-------hc-cCCceEEeecCCCCCH
Confidence 77654311 112222222222378999999999996532111 111111 11 2346999999999999
Q ss_pred hhHHHHHH
Q 008003 341 DDLEVALL 348 (581)
Q Consensus 341 ~eLl~~L~ 348 (581)
.+++++|.
T Consensus 153 ~~~~~~l~ 160 (161)
T TIGR00231 153 DSAFKIVE 160 (161)
T ss_pred HHHHHHhh
Confidence 99999874
No 207
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=2.8e-18 Score=174.84 Aligned_cols=140 Identities=28% Similarity=0.298 Sum_probs=112.1
Q ss_pred EEEEEccCCCCcchHhhhhhcccc------------------cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSL------------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~------------------~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~ 252 (581)
+|+|+||+|+|||||+++|+...- .....+|+|.+.....+.+ ++..++|||||||.+|..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~~ 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFTI 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHHH
Confidence 589999999999999999963110 1123568999998899988 899999999999999999
Q ss_pred HHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEE
Q 008003 253 MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
.+..+++.+|++++|+|+.++...++...+..+...++|+++++||+|+.+.+.+.....+.+..- ......++|+
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~----~~~~~~~~Pi 155 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLG----ANPVPLQLPI 155 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC----CCceEEEecc
Confidence 999999999999999999999999999999999889999999999999986665554444433211 1112246778
Q ss_pred ecc
Q 008003 333 SAV 335 (581)
Q Consensus 333 SAk 335 (581)
|+.
T Consensus 156 sa~ 158 (270)
T cd01886 156 GEE 158 (270)
T ss_pred ccC
Confidence 775
No 208
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.77 E-value=2.7e-18 Score=161.30 Aligned_cols=140 Identities=22% Similarity=0.237 Sum_probs=94.7
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCc----chhhHHHhhccccccEEEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH----AAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~----~~~~~~~~~~~~~aDivll 266 (581)
+|+++|++|+|||||+|+|.+..... ..|. ...+.. . .+|||||. ..+...+..++..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~~---~v~~~~-~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKTQ---AVEFND-K----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccce---EEEECC-C----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999998754221 1121 112221 1 26999996 2333333445789999999
Q ss_pred EEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHH
Q 008003 267 VVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (581)
Q Consensus 267 VvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~ 346 (581)
|+|++++........+.. ..++|+++++||+|+.+.+.+.....+... +...|++++||++|+|+++|+++
T Consensus 71 v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~-------~~~~p~~~~Sa~~g~gi~~l~~~ 141 (158)
T PRK15467 71 VHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLLET-------GFEEPIFELNSHDPQSVQQLVDY 141 (158)
T ss_pred EEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHHHc-------CCCCCEEEEECCCccCHHHHHHH
Confidence 999997654333222221 246799999999999754444333332222 22248999999999999999999
Q ss_pred HHHHH
Q 008003 347 LLLQA 351 (581)
Q Consensus 347 L~~~~ 351 (581)
|....
T Consensus 142 l~~~~ 146 (158)
T PRK15467 142 LASLT 146 (158)
T ss_pred HHHhc
Confidence 97654
No 209
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.77 E-value=2.1e-18 Score=162.15 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=100.4
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcch-hhHHHhhccccccEEEEEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAA-FSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~-~~~~~~~~~~~aDivllVv 268 (581)
+|+++|++|+|||||++++....+.....+.+ .......+..+ ....+.+|||||++. +.......++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNL-ESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCCh-HHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 58999999999999999998876644333332 22223333332 234688999999985 3455667889999999999
Q ss_pred eccCCCChhH----HHHHHHHh--hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCC-CChh
Q 008003 269 AADDGVMPQT----LEAIAHAN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK-TGLD 341 (581)
Q Consensus 269 Da~~g~~~~~----~~~i~~~~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg-~gI~ 341 (581)
|+++....+. ...+.... ..+.|+++|+||+|+.....-. ....... .... ..+++++||++| .|++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~e~Sa~~~~~~v~ 153 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVS-TEEGEKL---ASEL--GCLFFEVSAAEDYDGVH 153 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccC-HHHHHHH---HHHc--CCEEEEeCCCCCchhHH
Confidence 9988543222 22222222 2478999999999985321100 0000000 0111 247999999999 5999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
++|+.|...
T Consensus 154 ~~f~~l~~~ 162 (165)
T cd04146 154 SVFHELCRE 162 (165)
T ss_pred HHHHHHHHH
Confidence 999999764
No 210
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4e-18 Score=174.57 Aligned_cols=260 Identities=25% Similarity=0.298 Sum_probs=190.0
Q ss_pred CCCCCCCCCEEEEEccCCCCcchHhhhhhcccc-------------------------------cccccCceeEeeeeEE
Q 008003 182 GTEILPRPPVVTVMGHVDHGKTSLLDALRQTSL-------------------------------VAKEAGGITQHMGAFV 230 (581)
Q Consensus 182 ~~~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~-------------------------------~~~~~~g~T~d~~~~~ 230 (581)
.+....+..+++++||+++||||+-+.|....- ......|-|..++...
T Consensus 72 ~~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~ 151 (501)
T KOG0459|consen 72 CGEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAY 151 (501)
T ss_pred ccCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEE
Confidence 444456789999999999999999887732100 0112346777788888
Q ss_pred EeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCC-------ChhHHHHHHHHhhcCCC-EEEEEeCCCCC
Q 008003 231 VGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-------MPQTLEAIAHANAANVP-IVVAINKCDKP 302 (581)
Q Consensus 231 ~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-------~~~~~~~i~~~~~~~~p-iIvViNK~Dl~ 302 (581)
+.. ....++++|+|||..|...+..++.+||+.++|+.+..+. -.|+.++...++..++. .|+++||||-+
T Consensus 152 FEt-e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddP 230 (501)
T KOG0459|consen 152 FET-ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 230 (501)
T ss_pred EEe-cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCC
Confidence 887 7789999999999999999999999999999999986532 24889999888887775 89999999986
Q ss_pred C--CChhhHHhhhhhccchhhhc----CCcceEEEEeccCCCChhhHHHHHH----------HHHHHhhcccccCCCcce
Q 008003 303 A--ADPERVKNQLGAEGLELEDW----GGKVQVVEVSAVKKTGLDDLEVALL----------LQAEMMNLKARVDGPAQA 366 (581)
Q Consensus 303 ~--~~~~~~~~~l~~~~~~~~~~----~~~~~ii~iSAktg~gI~eLl~~L~----------~~~~~~~~~~~~~~~~~~ 366 (581)
. ++.+++.+........+... ..+..++|+|..+|.++.+..+... .+.+++......++|+.+
T Consensus 231 tvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~ 310 (501)
T KOG0459|consen 231 TVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRC 310 (501)
T ss_pred ccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehhccCcccccCCCCEEe
Confidence 4 34444433333222222211 1456799999999999998765111 112233345567788888
Q ss_pred EEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccc--eEEEEEcccCCcccccCCCCcEEEeccCCCC----CCCCeE
Q 008003 367 YVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWG--RIRAIRDMVGKSTDKARPAMPVEIEGLKGLP----MAGDDI 440 (581)
Q Consensus 367 ~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~--kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~----~~Gd~~ 440 (581)
+|.+-+.+ .|+++.|.+.+|+++.|+.+++-+... .|-.|+++ ...++.+.||+.+.+ .|+++. ..|-.+
T Consensus 311 pI~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~d-dvE~~~~~pGenvk~-rlkgieeedi~~GfiL 386 (501)
T KOG0459|consen 311 PVANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSD-DVETDRVAPGENVKL-RLKGIEEEDISPGFIL 386 (501)
T ss_pred ehhhhccc--cceEEEEEecccceecCCeEEEccCCcceEEEEEecc-cceeeeccCCcceEE-EecccchhhccCceEE
Confidence 88876655 689999999999999999999976544 56778865 778899999999976 444432 477677
Q ss_pred EEeCCH
Q 008003 441 IVVDSE 446 (581)
Q Consensus 441 ~~v~~~ 446 (581)
+...|.
T Consensus 387 ~~~~n~ 392 (501)
T KOG0459|consen 387 CSPNNP 392 (501)
T ss_pred ecCCCc
Confidence 665553
No 211
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.76 E-value=3.8e-18 Score=156.36 Aligned_cols=133 Identities=29% Similarity=0.341 Sum_probs=89.7
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcc-----hhhHHHhhccccccEEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA-----AFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~-----~~~~~~~~~~~~aDivl 265 (581)
+|+++|++|+|||||+|+|.+.... ..++++ +.+ .+ .+|||||+. .|..+. ..++.+|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~-~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEY-ND---GAIDTPGEYVENRRLYSALI-VTAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEE-cC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEE
Confidence 7999999999999999999987652 222111 222 22 689999972 233333 3588999999
Q ss_pred EEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 266 LVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
+|+|++++...+....+.. ...|+++|+||+|+.+... +........ . +..+++++||++|.|++++
T Consensus 68 lv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-------~-~~~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 68 LVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIERAKELLET-------A-GAEPIFEISSVDEQGLEAL 136 (142)
T ss_pred EEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHHHHHHHHHH-------c-CCCcEEEEecCCCCCHHHH
Confidence 9999998765444333222 2359999999999964211 111111111 1 1237899999999999999
Q ss_pred HHHHH
Q 008003 344 EVALL 348 (581)
Q Consensus 344 l~~L~ 348 (581)
+++|.
T Consensus 137 ~~~l~ 141 (142)
T TIGR02528 137 VDYLN 141 (142)
T ss_pred HHHHh
Confidence 99874
No 212
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.76 E-value=6.2e-18 Score=156.90 Aligned_cols=149 Identities=23% Similarity=0.274 Sum_probs=105.6
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEe
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvD 269 (581)
+|+++|++|+|||||+++|.+..+.....+ ++.+.....+... ....+.+|||||+..+...+...++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDP-TIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCC-ChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 589999999999999999998775444433 3334444445442 14678999999999999999999999999999999
Q ss_pred ccCCCChhH-HHHHHHH---hh-cCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 270 ADDGVMPQT-LEAIAHA---NA-ANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 270 a~~g~~~~~-~~~i~~~---~~-~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
.++...... ...+..+ .. .+.|+++|+||+|+..... +....... .+ ..+++++||++|.|++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~--~~~~~~~S~~~~~~i~ 150 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-------EW--GCPFIETSAKDNINID 150 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-------Hc--CCcEEEeccCCCCCHH
Confidence 987432111 1222222 11 4789999999999965211 11111111 11 1589999999999999
Q ss_pred hHHHHHHH
Q 008003 342 DLEVALLL 349 (581)
Q Consensus 342 eLl~~L~~ 349 (581)
+++++|..
T Consensus 151 ~l~~~l~~ 158 (160)
T cd00876 151 EVFKLLVR 158 (160)
T ss_pred HHHHHHHh
Confidence 99999875
No 213
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.76 E-value=4e-18 Score=161.12 Aligned_cols=150 Identities=24% Similarity=0.238 Sum_probs=102.8
Q ss_pred EEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh-------hHHHhhccccccEEEE
Q 008003 194 VMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-------SAMRKRGAAVTDIVVL 266 (581)
Q Consensus 194 IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~-------~~~~~~~~~~aDivll 266 (581)
++|++|||||||+|+|.+........+++|.+.....+.+.++..+.||||||+... .......+..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999999876556677888877766666622899999999997321 1122345678999999
Q ss_pred EEeccCCC------ChhHHH----HHHHHh-------hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceE
Q 008003 267 VVAADDGV------MPQTLE----AIAHAN-------AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQV 329 (581)
Q Consensus 267 VvDa~~g~------~~~~~~----~i~~~~-------~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~i 329 (581)
|+|+++.. ...... .+.... ..+.|+++|+||+|+...... ..... .........++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~--~~~~~----~~~~~~~~~~~ 154 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL--EEELV----RELALEEGAEV 154 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH--HHHHH----HHHhcCCCCCE
Confidence 99998752 111111 121111 146899999999999643221 11100 00111124579
Q ss_pred EEEeccCCCChhhHHHHHHH
Q 008003 330 VEVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 330 i~iSAktg~gI~eLl~~L~~ 349 (581)
+++||++|.|+++++++|..
T Consensus 155 ~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 155 VPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred EEEehhhhcCHHHHHHHHHh
Confidence 99999999999999998864
No 214
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=7e-18 Score=180.05 Aligned_cols=160 Identities=18% Similarity=0.139 Sum_probs=113.6
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-------hhHHHhhcccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAAV 260 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-------~~~~~~~~~~~ 260 (581)
--..|+|+|.||||||||+|+|++.+..++..|+||++.....+.+.++..++|+||||... ......+.+..
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 34579999999999999999999988888889999999988888774456799999999532 22233356789
Q ss_pred ccEEEEEEeccC---C-CChhHHHHHHHHhh-----cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEE
Q 008003 261 TDIVVLVVAADD---G-VMPQTLEAIAHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVE 331 (581)
Q Consensus 261 aDivllVvDa~~---g-~~~~~~~~i~~~~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~ 331 (581)
+|++++|+|++. . ...+....+..+.. .+.|+++|+||+|+... ......+.... ..++...++++
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~---~~~~~~~~Vi~ 312 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIV---EALGWEGPVYL 312 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHH---HHhCCCCCEEE
Confidence 999999999872 1 11222222233332 36899999999999642 22222222111 11111236899
Q ss_pred EeccCCCChhhHHHHHHHHHH
Q 008003 332 VSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 332 iSAktg~gI~eLl~~L~~~~~ 352 (581)
+||+++.|+++|++.|.....
T Consensus 313 ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 313 ISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred EECCCCcCHHHHHHHHHHHhh
Confidence 999999999999999987654
No 215
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=99.76 E-value=6.3e-18 Score=144.08 Aligned_cols=93 Identities=47% Similarity=0.817 Sum_probs=90.6
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeC
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVD 444 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~ 444 (581)
.++|+|+..+++.|.+++++|++|+|++||+|++|..+||||+|++.+|+.+++|.||+++.|.||+++|.+||.|.+++
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~gkVr~l~d~~g~~v~~a~Ps~~V~I~G~~~~P~aGd~~~~~~ 81 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYGKVRAMFDENGKRVKEAGPSTPVEILGLKGVPQAGDKFLVVE 81 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccccEEEEEECCCCCCCCEECCCCcEEEcCCCCCCCCCCEEEEeC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 008003 445 SEERARMLSSGRK 457 (581)
Q Consensus 445 ~~~~a~~~~~~r~ 457 (581)
|+.+|++++++|+
T Consensus 82 se~~Ak~~~~~r~ 94 (95)
T cd03702 82 SEKEAKEIAEYRK 94 (95)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999999885
No 216
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.76 E-value=1.6e-17 Score=154.24 Aligned_cols=156 Identities=21% Similarity=0.268 Sum_probs=110.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccc-cccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh--------HHHhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS--------AMRKRGA 258 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~-~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~--------~~~~~~~ 258 (581)
+..+|+++|++|+|||||+|+|.+..... ...+.++.+........ .+..+.+|||||..... ......+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 35789999999999999999999876542 33445555554444443 56889999999975433 2334567
Q ss_pred ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 259 ~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
..+|++++|+|+++.........+..+...+.|+++|+||+|+... .+.....+... .......+++++|++++.
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~----~~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD-KEDLLPLLEKL----KELGPFAEIFPISALKGE 155 (168)
T ss_pred HhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc-HHHHHHHHHHH----HhccCCCceEEEEeccCC
Confidence 8899999999999874444555556666667999999999999632 22222211111 111223579999999999
Q ss_pred ChhhHHHHHHH
Q 008003 339 GLDDLEVALLL 349 (581)
Q Consensus 339 gI~eLl~~L~~ 349 (581)
|+++|++.|.+
T Consensus 156 ~~~~l~~~l~~ 166 (168)
T cd04163 156 NVDELLEEIVK 166 (168)
T ss_pred ChHHHHHHHHh
Confidence 99999999865
No 217
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.76 E-value=1.3e-17 Score=159.34 Aligned_cols=157 Identities=25% Similarity=0.319 Sum_probs=117.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.+..+|+++|..|+|||||+++|....... ..| |..+....+.+ ++..+.+||.+|+..+...+..++..+|++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~p--T~g~~~~~i~~-~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIP--TIGFNIEEIKY-KGYSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEE--ESSEEEEEEEE-TTEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCc--ccccccceeee-CcEEEEEEeccccccccccceeeccccceeEE
Confidence 566899999999999999999998765443 223 33444556666 78999999999999999999999999999999
Q ss_pred EEeccCCC-ChhHHHHHHHHh----hcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGV-MPQTLEAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~-~~~~~~~i~~~~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|+++.. ..+..+.+..+. ..++|+++++||+|+.+. +.+++...+.-..+. ....+.++.|||++|+|+
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~---~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK---NKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT---SSSCEEEEEEBTTTTBTH
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcc---cCCceEEEeeeccCCcCH
Confidence 99998732 233444443332 246899999999999764 333444333222211 124568999999999999
Q ss_pred hhHHHHHHHH
Q 008003 341 DDLEVALLLQ 350 (581)
Q Consensus 341 ~eLl~~L~~~ 350 (581)
.+.++||..+
T Consensus 165 ~e~l~WL~~~ 174 (175)
T PF00025_consen 165 DEGLEWLIEQ 174 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999764
No 218
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.75 E-value=2.3e-17 Score=159.42 Aligned_cols=156 Identities=22% Similarity=0.325 Sum_probs=108.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc--cccccCceeEeeeeEEEeecCCeEEEEEeCCCc----------chhhHHH
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH----------AAFSAMR 254 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~--~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~----------~~~~~~~ 254 (581)
...++|+++|++|+|||||+|+|++..+ ..+..+|+|+++....+ +..+.||||||+ +.+..+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV----NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec----CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 4678999999999999999999998652 33455677777654432 368999999995 2333344
Q ss_pred hhccc---cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEE
Q 008003 255 KRGAA---VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVV 330 (581)
Q Consensus 255 ~~~~~---~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii 330 (581)
..++. .++++++|+|++.+......+....+...++|+++++||+|+.+... +.....+.. .+... ..+++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~---~l~~~--~~~~~ 172 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRK---ALKFG--DDEVI 172 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHH---HHHhc--CCceE
Confidence 43443 45788999998887666555555666667899999999999964321 111111111 11111 35789
Q ss_pred EEeccCCCChhhHHHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~~~ 351 (581)
++||++|.|++++++.|....
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999987643
No 219
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.75 E-value=7e-18 Score=157.73 Aligned_cols=152 Identities=23% Similarity=0.298 Sum_probs=113.3
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEe
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvD 269 (581)
||+++|++++|||||+++|.+..+.....+.+..+.....+..+ ....+.+|||+|++.|..++...++.+|++++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 69999999999999999999988776666655566666666652 33679999999999999999899999999999999
Q ss_pred ccCCCC----hhHHHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 270 ADDGVM----PQTLEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 270 a~~g~~----~~~~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
.++... ..|...+......+.|+++++||.|+.... .++..... ..+ + .+++++||+++.|+.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~-------~~~-~-~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFA-------KEL-G-VPYFEVSAKNGENVKE 151 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHH-------HHT-T-SEEEEEBTTTTTTHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHH-------HHh-C-CEEEEEECCCCCCHHH
Confidence 987322 233333333333458999999999986411 11111111 112 2 6899999999999999
Q ss_pred HHHHHHHHH
Q 008003 343 LEVALLLQA 351 (581)
Q Consensus 343 Ll~~L~~~~ 351 (581)
++..+.+..
T Consensus 152 ~f~~~i~~i 160 (162)
T PF00071_consen 152 IFQELIRKI 160 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 220
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=6.1e-18 Score=167.37 Aligned_cols=113 Identities=32% Similarity=0.436 Sum_probs=93.2
Q ss_pred CEEEEEccCCCCcchHhhhhhccccc----------------ccccCceeEeeeeEEEeec---------CCeEEEEEeC
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLV----------------AKEAGGITQHMGAFVVGMS---------TGASITFLDT 244 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~----------------~~~~~g~T~d~~~~~~~~~---------~g~~i~liDT 244 (581)
++|+++||+++|||||+++|+...-. .....|+|.+.....+.+. .++.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 47999999999999999999653211 1123466666554444332 2688999999
Q ss_pred CCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 245 PGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 245 pG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
|||++|...+..+++.+|++++|+|+.+|...++.+.+..+...++|+++|+||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 9999999999999999999999999999999999999998888889999999999985
No 221
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.75 E-value=8.3e-18 Score=162.08 Aligned_cols=158 Identities=19% Similarity=0.224 Sum_probs=104.6
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|....+.....+++..++ ...+.+. ....+.+|||||++.+.......++.+|++++|+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 4899999999999999999987666544444333333 2233332 2256889999999888777667788999999999
Q ss_pred eccCCCChh-----HHHHHHHHhhcCCCEEEEEeCCCCCCCChh-------hHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 269 AADDGVMPQ-----TLEAIAHANAANVPIVVAINKCDKPAADPE-------RVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 269 Da~~g~~~~-----~~~~i~~~~~~~~piIvViNK~Dl~~~~~~-------~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
|.++....+ |.+.+.. ...++|+++|+||+|+...... +... .+....+....+..++++|||++
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~e~Sa~~ 157 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRR-YCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVP--IQQGKRVAKEIGAKKYMECSALT 157 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEeeChhhhhCcccccccccCCcCC--HHHHHHHHHHhCCcEEEEccCCC
Confidence 998743222 2222222 1236899999999998532110 0000 00011111111234799999999
Q ss_pred CCChhhHHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQA 351 (581)
Q Consensus 337 g~gI~eLl~~L~~~~ 351 (581)
|.|++++++++....
T Consensus 158 ~~~v~~~f~~l~~~~ 172 (187)
T cd04129 158 GEGVDDVFEAATRAA 172 (187)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998755
No 222
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.75 E-value=1.2e-17 Score=174.80 Aligned_cols=156 Identities=21% Similarity=0.194 Sum_probs=110.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-------hhHHHhhcccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAAV 260 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-------~~~~~~~~~~~ 260 (581)
--..|+|+|.||||||||+|+|.+.+..+...+++|.+.....+.+.++..++||||||+.. +.....+.+..
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 34689999999999999999999987777778888988877777774448999999999642 22233445668
Q ss_pred ccEEEEEEeccCC---CChhHHHHH-HHHhh-----cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEE
Q 008003 261 TDIVVLVVAADDG---VMPQTLEAI-AHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVE 331 (581)
Q Consensus 261 aDivllVvDa~~g---~~~~~~~~i-~~~~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~ 331 (581)
+|++++|+|+++. ...+....| ..+.. .++|+++|+||+|+.... .......... ..+ ..++++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~--~~~~~~~~l~---~~~--~~~vi~ 308 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE--ELAELLKELK---KAL--GKPVFP 308 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH--HHHHHHHHHH---HHc--CCcEEE
Confidence 9999999999864 111222222 22221 368999999999996431 1111111111 111 247999
Q ss_pred EeccCCCChhhHHHHHHHH
Q 008003 332 VSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 332 iSAktg~gI~eLl~~L~~~ 350 (581)
+||++++|+++|+++|...
T Consensus 309 iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 309 ISALTGEGLDELLYALAEL 327 (329)
T ss_pred EEccCCcCHHHHHHHHHHH
Confidence 9999999999999998763
No 223
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.74 E-value=5.3e-18 Score=153.43 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=117.7
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.++|.++|.+|+|||||+-++..+.+......++..|+....+.++ +..++.+|||+|++.|..+.+.+++.|.++|+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV 90 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV 90 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence 4799999999999999999999998877666668888888888773 346889999999999999999999999999999
Q ss_pred EeccCCCChhHHHHHHH-H----hhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 268 VAADDGVMPQTLEAIAH-A----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 268 vDa~~g~~~~~~~~i~~-~----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
||++.......++.|.. + ...++-.++|+||+|..+. +... .+.+..+... ...-|+++||++.+|++.
T Consensus 91 YDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~--reEG~kfAr~-h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 91 YDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVD--REEGLKFARK-HRCLFIECSAKTRENVQC 164 (209)
T ss_pred EEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---cccc--HHHHHHHHHh-hCcEEEEcchhhhccHHH
Confidence 99997544333344321 1 1234557899999997431 1111 1223333222 134689999999999999
Q ss_pred HHHHHHHH
Q 008003 343 LEVALLLQ 350 (581)
Q Consensus 343 Ll~~L~~~ 350 (581)
.|+.|.+.
T Consensus 165 ~FeelveK 172 (209)
T KOG0080|consen 165 CFEELVEK 172 (209)
T ss_pred HHHHHHHH
Confidence 99888764
No 224
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.74 E-value=2e-17 Score=151.64 Aligned_cols=154 Identities=24% Similarity=0.321 Sum_probs=113.6
Q ss_pred EEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH-------HHhhccccccEEE
Q 008003 194 VMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA-------MRKRGAAVTDIVV 265 (581)
Q Consensus 194 IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~-------~~~~~~~~aDivl 265 (581)
++|++|+|||||+++|.+.... .+..+++|.+..........+..+.+|||||+..+.. .....+..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999987655 5667778888777777664478999999999766543 3345778999999
Q ss_pred EEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHH
Q 008003 266 LVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~ 345 (581)
+|+|++..........+......+.|+++|+||+|+........ ... ............+++++||+++.|++++++
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~ 157 (163)
T cd00880 81 FVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEE--LLE-LRLLILLLLLGLPVIAVSALTGEGIDELRE 157 (163)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHH--HHH-HHHhhcccccCCceEEEeeeccCCHHHHHH
Confidence 99999987666555545555667899999999999975322111 100 000111122456899999999999999999
Q ss_pred HHHHH
Q 008003 346 ALLLQ 350 (581)
Q Consensus 346 ~L~~~ 350 (581)
+|...
T Consensus 158 ~l~~~ 162 (163)
T cd00880 158 ALIEA 162 (163)
T ss_pred HHHhh
Confidence 98753
No 225
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.74 E-value=2.1e-17 Score=163.90 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=101.5
Q ss_pred CEEEEEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccc-cccEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAA-VTDIVVL 266 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~-~aDivll 266 (581)
.+|+++|++|+|||||+++|....+. ....+....+.....+.++ ....+.||||||++. ......+. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 47999999999999999999877664 3333322224444444432 347799999999983 23334555 8999999
Q ss_pred EEeccCCCChhHH-HHHHHHhh----cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 267 VVAADDGVMPQTL-EAIAHANA----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~i~~~~~----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|||+++....+.. +.+..+.. .++|+|+|+||+|+.....-. ....... ...+ ..+++++||++|.|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~-~~~~~~~---a~~~--~~~~~e~SA~~~~gv~ 152 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVS-VQEGRAC---AVVF--DCKFIETSAGLQHNVD 152 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceec-HHHHHHH---HHHc--CCeEEEecCCCCCCHH
Confidence 9999984322211 22222222 468999999999996432100 0000010 0111 2479999999999999
Q ss_pred hHHHHHHHHHHH
Q 008003 342 DLEVALLLQAEM 353 (581)
Q Consensus 342 eLl~~L~~~~~~ 353 (581)
+++++|......
T Consensus 153 ~l~~~l~~~~~~ 164 (221)
T cd04148 153 ELLEGIVRQIRL 164 (221)
T ss_pred HHHHHHHHHHHh
Confidence 999999876643
No 226
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=2.9e-17 Score=176.36 Aligned_cols=154 Identities=24% Similarity=0.253 Sum_probs=110.0
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-------hhHHHhhccccc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAAVT 261 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-------~~~~~~~~~~~a 261 (581)
-..|+++|.||||||||+|+|++.+......+++|.+.....+.+.++..++||||||... ......+.+..+
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 3589999999999999999999988777778899999888877774478999999999632 122233456679
Q ss_pred cEEEEEEeccCC---CChhHHHH-HHHHhh-----cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEE
Q 008003 262 DIVVLVVAADDG---VMPQTLEA-IAHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 262 DivllVvDa~~g---~~~~~~~~-i~~~~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
|++++|+|+++. ...+..+. ...+.. .++|+++|+||+|+... .+.. ..+.+ .++ .+++++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e~l-~~l~~------~l~--~~i~~i 307 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EENL-EEFKE------KLG--PKVFPI 307 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HHHH-HHHHH------HhC--CcEEEE
Confidence 999999999753 11122222 222222 46899999999998432 1111 11111 111 479999
Q ss_pred eccCCCChhhHHHHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~~~~ 352 (581)
||++++|+++|+++|.....
T Consensus 308 SA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 308 SALTGQGLDELLYAVAELLE 327 (424)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987553
No 227
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=3.3e-17 Score=178.03 Aligned_cols=161 Identities=27% Similarity=0.246 Sum_probs=113.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-------hhHHHhhccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAA 259 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-------~~~~~~~~~~ 259 (581)
+--..|+|+|.||||||||+|+|++.+......++||++.....+.+ ++..++|+||||... ......+.+.
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 34578999999999999999999998877788899999988888887 678999999999532 1122334567
Q ss_pred cccEEEEEEeccCCC----ChhHHH----HHH-HH----------hhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchh
Q 008003 260 VTDIVVLVVAADDGV----MPQTLE----AIA-HA----------NAANVPIVVAINKCDKPAADPERVKNQLGAEGLEL 320 (581)
Q Consensus 260 ~aDivllVvDa~~g~----~~~~~~----~i~-~~----------~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~ 320 (581)
.+|++|+|+|+++.. .....+ .+. +. ...++|+|+|+||+|+++.. .....+.. .+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~l~~---~l 310 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEFVRP---EL 310 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--HHHHHHHH---HH
Confidence 899999999997521 111122 121 11 12468999999999996431 11111111 11
Q ss_pred hhcCCcceEEEEeccCCCChhhHHHHHHHHHHHhh
Q 008003 321 EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMN 355 (581)
Q Consensus 321 ~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~ 355 (581)
... .+++++|||++++|+++|+++|........
T Consensus 311 ~~~--g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 311 EAR--GWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHc--CCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 111 247999999999999999999987765443
No 228
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.73 E-value=1.5e-17 Score=156.28 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=98.0
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.+|+++|++|+|||||+.++....+.....+ +..++ ...+.+ +| ..+.+|||+|++.. .+++.+|++++|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-~~~~~-~~~i~~-~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv 72 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESP-EGGRF-KKEVLV-DGQSHLLLIRDEGGAPDA-----QFASWVDAVIFV 72 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCC-Cccce-EEEEEE-CCEEEEEEEEECCCCCch-----hHHhcCCEEEEE
Confidence 4799999999999999999987766543322 22222 234455 45 56899999998752 355789999999
Q ss_pred EeccCCCChhHHH-HHHHHh----hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 268 VAADDGVMPQTLE-AIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 268 vDa~~g~~~~~~~-~i~~~~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
||.++....+... .+..+. ..+.|+++|+||+|+.......+... .+..+.+....+++++|||++|.||++
T Consensus 73 ~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~---~~~~~~~~~~~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 73 FSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDA---RARQLCADMKRCSYYETCATYGLNVER 149 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHH---HHHHHHHHhCCCcEEEEecCCCCCHHH
Confidence 9999854433322 222222 14579999999999843211111111 111111111235899999999999999
Q ss_pred HHHHHHH
Q 008003 343 LEVALLL 349 (581)
Q Consensus 343 Ll~~L~~ 349 (581)
+|+.+.+
T Consensus 150 ~f~~~~~ 156 (158)
T cd04103 150 VFQEAAQ 156 (158)
T ss_pred HHHHHHh
Confidence 9998864
No 229
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.8e-17 Score=146.83 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=121.9
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
-.+|+++|..|+|||.|+.++...-+..+.-.++..|+....+... +..++.+|||+|++.|......+++.|+.+|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 3689999999999999999999999888877888888888888873 347889999999999999999999999999999
Q ss_pred EeccCCC----ChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC--hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 268 VAADDGV----MPQTLEAIAHANAANVPIVVAINKCDKPAAD--PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 268 vDa~~g~----~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|.+... .++|+..+......++--|+|+||+|+.+.. +++.-+++.+. .+.-++++||+..+|++
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~--------qdmyfletsakea~nve 158 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEA--------QDMYFLETSAKEADNVE 158 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHh--------hhhhhhhhcccchhhHH
Confidence 9998743 4677777776666667789999999996431 12222222111 12347899999999999
Q ss_pred hHHHHHHH
Q 008003 342 DLEVALLL 349 (581)
Q Consensus 342 eLl~~L~~ 349 (581)
.||..+..
T Consensus 159 ~lf~~~a~ 166 (213)
T KOG0095|consen 159 KLFLDLAC 166 (213)
T ss_pred HHHHHHHH
Confidence 99988764
No 230
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=9.7e-17 Score=152.78 Aligned_cols=157 Identities=24% Similarity=0.295 Sum_probs=119.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc--ccccccCceeEeeeeEEEeecCCeEEEEEeCCCc----------chhhHHHh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS--LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH----------AAFSAMRK 255 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~--~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~----------~~~~~~~~ 255 (581)
..+-|+++|++|||||||+|+|++.+ ...+..||.|+.+..+.+.. .+.|+|.||. +.+..+..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~----~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD----ELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC----cEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 56899999999999999999999976 66788999999998887743 3899999994 33344444
Q ss_pred hccc---cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChh-hHHhhhh-hccchhhhcCCcceEE
Q 008003 256 RGAA---VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE-RVKNQLG-AEGLELEDWGGKVQVV 330 (581)
Q Consensus 256 ~~~~---~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~-~~~~~l~-~~~~~~~~~~~~~~ii 330 (581)
.|+. .-.++++++|+..+....+.+.+..+...++|+++++||+|....+.. +....+. ..... ......++
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~---~~~~~~~~ 175 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP---PPDDQWVV 175 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC---CCccceEE
Confidence 4542 357889999999999999999999999999999999999999764321 1112222 11111 11111288
Q ss_pred EEeccCCCChhhHHHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~~~ 351 (581)
..|+.++.|+++|...|....
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EEecccccCHHHHHHHHHHHh
Confidence 899999999999999987654
No 231
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.72 E-value=4.5e-17 Score=186.81 Aligned_cols=153 Identities=18% Similarity=0.263 Sum_probs=116.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHH----------Hhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM----------RKRG 257 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~----------~~~~ 257 (581)
+..+|+++|+||+|||||+|+|.+.+..+++.+|+|.+.....+.. ++..+.++||||+.++... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 4578999999999999999999998887888899999988888776 7889999999998776421 1122
Q ss_pred --cccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEec
Q 008003 258 --AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 258 --~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSA 334 (581)
...+|++++|+|+++.. .....+.++...++|+++|+||+|+.+.. .....+.+. +.+ .+|++++||
T Consensus 81 l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~------~~L--G~pVvpiSA 150 (772)
T PRK09554 81 ILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALS------ARL--GCPVIPLVS 150 (772)
T ss_pred HhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHH------HHh--CCCEEEEEe
Confidence 24789999999998742 33445566677899999999999986321 111111111 112 358999999
Q ss_pred cCCCChhhHHHHHHHHH
Q 008003 335 VKKTGLDDLEVALLLQA 351 (581)
Q Consensus 335 ktg~gI~eLl~~L~~~~ 351 (581)
++|+|+++|.+.+....
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999997643
No 232
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.72 E-value=3.2e-17 Score=159.40 Aligned_cols=158 Identities=18% Similarity=0.151 Sum_probs=98.3
Q ss_pred CCEEEEEccCCCCcchHhh-hhhccc-----ccccccCceeE-eeeeEE--------Eeec-CCeEEEEEeCCCcchhhH
Q 008003 189 PPVVTVMGHVDHGKTSLLD-ALRQTS-----LVAKEAGGITQ-HMGAFV--------VGMS-TGASITFLDTPGHAAFSA 252 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln-~L~~~~-----~~~~~~~g~T~-d~~~~~--------~~~~-~g~~i~liDTpG~~~~~~ 252 (581)
..+|+++|++|||||||+. ++.+.. +.....|++.. +..... ...+ ....+.||||||++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3689999999999999996 554432 23334444421 211111 1121 347899999999875 3
Q ss_pred HHhhccccccEEEEEEeccCCCChhHHH-HH-HHHh--hcCCCEEEEEeCCCCCCCChhh--------------HHhhhh
Q 008003 253 MRKRGAAVTDIVVLVVAADDGVMPQTLE-AI-AHAN--AANVPIVVAINKCDKPAADPER--------------VKNQLG 314 (581)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~~~~~-~i-~~~~--~~~~piIvViNK~Dl~~~~~~~--------------~~~~l~ 314 (581)
++..+++.+|++|+|+|.++....+... .| ..+. ..+.|+++|+||+||....... ......
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4566889999999999998854433221 12 2222 2468999999999995321000 000011
Q ss_pred hccchhhhcCCcceEEEEeccCCCChhhHHHHHHH
Q 008003 315 AEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 315 ~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~ 349 (581)
+.+..+... ..+++++|||++|.||+++|+.+.+
T Consensus 160 ~e~~~~a~~-~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 160 ETGRAVAKE-LGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred HHHHHHHHH-hCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 111122211 1248999999999999999998875
No 233
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.7e-17 Score=146.78 Aligned_cols=153 Identities=17% Similarity=0.164 Sum_probs=118.0
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.++.|+|...+|||||+-+..++.+......+...|+....+.-. .-.++.+|||+|++.+..+...++++|+++||++
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmy 101 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEE
Confidence 489999999999999999999998877776667777766655432 3478999999999999999999999999999999
Q ss_pred eccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|.++....... -.++.....+.|+|+|+||||+.+.. .++......+++ +.+|++|||.+.|+.
T Consensus 102 DitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LG---------fefFEtSaK~NinVk 172 (193)
T KOG0093|consen 102 DITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLG---------FEFFETSAKENINVK 172 (193)
T ss_pred ecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhC---------hHHhhhcccccccHH
Confidence 99984433222 23333345689999999999996432 233333333333 368999999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
++++.+....
T Consensus 173 ~~Fe~lv~~I 182 (193)
T KOG0093|consen 173 QVFERLVDII 182 (193)
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 234
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.72 E-value=3.5e-17 Score=161.29 Aligned_cols=113 Identities=35% Similarity=0.481 Sum_probs=88.9
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccc-------------------cccCceeEeeeeEEEeec----CCeEEEEEeCCC
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVA-------------------KEAGGITQHMGAFVVGMS----TGASITFLDTPG 246 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~-------------------~~~~g~T~d~~~~~~~~~----~g~~i~liDTpG 246 (581)
++|+|+||+|+|||||+++|+...... ....|+|.+.....+.+. ....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 369999999999999999997643221 122455655544444332 347899999999
Q ss_pred cchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 247 HAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 247 ~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
|.+|...+..++..+|++++|+|+.++...++...+..+...++|+++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99999888899999999999999998887777676676666779999999999985
No 235
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.72 E-value=3.9e-17 Score=145.86 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=120.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+.+|+|++|+|||||+-++..+.+..+++.++..|+....+.++ +...+.+|||+|++.|..+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 456899999999999999999999999998888899998888884 2367899999999999999999999999999999
Q ss_pred eccCCCCh----hHHHHHHHHhhcCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 269 AADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 269 Da~~g~~~----~~~~~i~~~~~~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|.+++... .|++.++.. ...+|-++|+||.|+++... ++...... +.++.+|++||+...|++
T Consensus 89 DVTn~ESF~Nv~rWLeei~~n-cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~---------~mgie~FETSaKe~~NvE 158 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNN-CDSVPKVLVGNKNDDPERRVVDTEDARAFAL---------QMGIELFETSAKENENVE 158 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhc-CccccceecccCCCCccceeeehHHHHHHHH---------hcCchheehhhhhcccch
Confidence 99986543 233333322 23578899999999975321 11111111 134678999999999999
Q ss_pred hHHHHHHHHHH
Q 008003 342 DLEVALLLQAE 352 (581)
Q Consensus 342 eLl~~L~~~~~ 352 (581)
..|..|..+.-
T Consensus 159 ~mF~cit~qvl 169 (198)
T KOG0079|consen 159 AMFHCITKQVL 169 (198)
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 236
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.6e-17 Score=156.05 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=118.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
...++|+++|++++|||-|+.++..+.+......++..++....+.++ .-.+..||||+|+++|......+++.|-+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 345789999999999999999999999887777878888888777773 2367799999999999999999999999999
Q ss_pred EEEeccCCCChh----HHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 266 LVVAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 266 lVvDa~~g~~~~----~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|||.+.....+ |+..++.....++++++|+||+||.... ..-.+.+..+.+. ....++++||+.+.|++
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lr-----aV~te~~k~~Ae~-~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLR-----AVPTEDGKAFAEK-EGLFFLETSALDATNVE 165 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhcc-----ccchhhhHhHHHh-cCceEEEecccccccHH
Confidence 999998754333 2222332334578899999999995411 1111111111111 13479999999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
+.|+.+...
T Consensus 166 ~aF~~~l~~ 174 (222)
T KOG0087|consen 166 KAFERVLTE 174 (222)
T ss_pred HHHHHHHHH
Confidence 999877653
No 237
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.71 E-value=4.8e-17 Score=182.43 Aligned_cols=145 Identities=24% Similarity=0.333 Sum_probs=110.2
Q ss_pred ccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHH------Hhhc--cccccEEEEE
Q 008003 196 GHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM------RKRG--AAVTDIVVLV 267 (581)
Q Consensus 196 G~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~------~~~~--~~~aDivllV 267 (581)
|.||+|||||+|+|.+.+...++.+|+|.+.....+.+ ++..+.+|||||+.++... ...+ ...+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 89999999999999998887888999999998888877 7788999999998776532 2222 2478999999
Q ss_pred EeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhh-HHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHH
Q 008003 268 VAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPER-VKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (581)
Q Consensus 268 vDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~-~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~ 346 (581)
+|+++. ..+.....++...++|+++|+||+|+.+..... ..+.+.+ .+ +.+++++||++|+|+++++++
T Consensus 80 vDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~------~l--g~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 80 VDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEE------RL--GVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred ecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHH------Hc--CCCEEEEECCCCCCHHHHHHH
Confidence 999872 334555555666789999999999985322111 1111111 11 258999999999999999999
Q ss_pred HHHHH
Q 008003 347 LLLQA 351 (581)
Q Consensus 347 L~~~~ 351 (581)
+....
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98654
No 238
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=1.3e-16 Score=162.40 Aligned_cols=117 Identities=31% Similarity=0.451 Sum_probs=94.9
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccc----------------------cccCceeEeeeeEEEeecCCeEEEEEeCCC
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVA----------------------KEAGGITQHMGAFVVGMSTGASITFLDTPG 246 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~----------------------~~~~g~T~d~~~~~~~~~~g~~i~liDTpG 246 (581)
..+|+|+||+|+|||||+++|+...-.. ....|+|.......+.+ ++..++||||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence 3689999999999999999997531110 01234555555566776 789999999999
Q ss_pred cchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh
Q 008003 247 HAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP 306 (581)
Q Consensus 247 ~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~ 306 (581)
+.+|......+++.+|++++|+|++++...++...+..+...++|+++++||+|+...+.
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDP 140 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCH
Confidence 999998888899999999999999998888888888887778999999999999865543
No 239
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=9.1e-17 Score=144.16 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=114.8
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
-.+++++|+.|.|||+|+.++...++......++..++....+... .-.++.+|||+|++.|......+++.|-.+++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 3689999999999999999999998877667777778877777762 236789999999999999999999999999999
Q ss_pred EeccCCCCh----hHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 268 VAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 268 vDa~~g~~~----~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
+|+++.... .|+..++.+...++-+|+++||.||... +....+....+..+ ..+.+.++||+||+|+++.
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~---R~VtflEAs~FaqE---nel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE---REVTFLEASRFAQE---NELMFLETSALTGENVEEA 162 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh---hhhhHHHHHhhhcc---cceeeeeecccccccHHHH
Confidence 999974432 2333334444556679999999999533 21222221111111 2346899999999999997
Q ss_pred HHHHH
Q 008003 344 EVALL 348 (581)
Q Consensus 344 l~~L~ 348 (581)
|-...
T Consensus 163 Fl~c~ 167 (214)
T KOG0086|consen 163 FLKCA 167 (214)
T ss_pred HHHHH
Confidence 65543
No 240
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.70 E-value=4.6e-16 Score=153.31 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=110.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
....+|+++|++|+|||||++++....+.....+++..++....+... +...+.+|||||++.|..++..++..+|+++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 345799999999999999999887766655555555555544444332 4578999999999999988888899999999
Q ss_pred EEEeccCCCChhHHHHH-HHH--hhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 266 LVVAADDGVMPQTLEAI-AHA--NAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~i-~~~--~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|+|.++....+....| ..+ ...+.|+++++||+|+..... ..... +. .. ....++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~-~~------~~--~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQIT-FH------RK--KNLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHH-HH------HH--cCCEEEEEeCCCCCCHH
Confidence 99999875443332222 111 124689999999999853211 11111 10 11 13478999999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
+++.+|.+..
T Consensus 158 ~~f~~ia~~l 167 (215)
T PTZ00132 158 KPFLWLARRL 167 (215)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 241
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=99.69 E-value=2.2e-16 Score=135.11 Aligned_cols=93 Identities=47% Similarity=0.751 Sum_probs=90.4
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeC
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVD 444 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~ 444 (581)
.++|+|+..++++|.+++++|++|+|++||+|++|..+||||.|.+.+|+.+++|+|++++.+.||.+.|.+||.|..+.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~GkVr~~~d~~g~~v~~a~Ps~~v~i~g~~~~p~aGd~~~~~~ 81 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPSTPVEILGLKDVPKAGDGVLVVA 81 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCccceEEEEECCCCCCccccCCCCCEEEeeecCCccCCCEEEEeC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 008003 445 SEERARMLSSGRK 457 (581)
Q Consensus 445 ~~~~a~~~~~~r~ 457 (581)
++.+|++++++|.
T Consensus 82 ~e~~a~~~~~~r~ 94 (95)
T cd03701 82 SEKEAKEIGSYRL 94 (95)
T ss_pred CCHHHHHhhHhhc
Confidence 9999999998874
No 242
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.68 E-value=2e-16 Score=142.95 Aligned_cols=150 Identities=22% Similarity=0.231 Sum_probs=104.0
Q ss_pred EEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccC
Q 008003 194 VMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD 272 (581)
Q Consensus 194 IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~ 272 (581)
++|++|+|||||+++|.+..........+..+......... .+..+.+|||||+..+.......+..+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999876622222222234433333321 36789999999999888887888899999999999998
Q ss_pred CCChhHHHHH-----HHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHH
Q 008003 273 GVMPQTLEAI-----AHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVAL 347 (581)
Q Consensus 273 g~~~~~~~~i-----~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L 347 (581)
+........+ ......++|+++++||+|+............. ........+++++|+.++.|+++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAE-----QLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHH-----HHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 6544443322 23345678999999999996543222211000 0011134689999999999999999987
Q ss_pred H
Q 008003 348 L 348 (581)
Q Consensus 348 ~ 348 (581)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred h
Confidence 5
No 243
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1e-15 Score=142.81 Aligned_cols=159 Identities=28% Similarity=0.338 Sum_probs=123.9
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccc-------cccCc---eeEeeeeEEEeecCCeEEEEEeCCCcchhhHHH
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-------KEAGG---ITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR 254 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~-------~~~~g---~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~ 254 (581)
......+|+|.|+.++||||++.++....... ....+ +|.-.....+.+.++..+.|+|||||++|..+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 34567899999999999999999998765311 11223 555555555555466999999999999999999
Q ss_pred hhccccccEEEEEEeccCCCChhHHHHHHHHhhcC-CCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEE
Q 008003 255 KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAAN-VPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 255 ~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~-~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
.-..+.++.+++++|.+.+......+.+..+...+ +|++|++||.||.+..+ +.+.+.+. ... ..+++|++
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~-~~~------~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALK-LEL------LSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHH-hcc------CCCceeee
Confidence 99999999999999999987766677777777777 89999999999987644 44444333 221 24689999
Q ss_pred eccCCCChhhHHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~~ 350 (581)
+|..++|..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999998888653
No 244
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=2.3e-16 Score=160.93 Aligned_cols=148 Identities=24% Similarity=0.335 Sum_probs=107.0
Q ss_pred EEEEEccCCCCcchHhhhhhccccccc------------------ccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAK------------------EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~------------------~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~ 252 (581)
+|+++|++|+|||||+++|+....... ...++|.......+.+ +++.+++|||||+.+|..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f~~ 79 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADFVG 79 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHHHH
Confidence 589999999999999999965321100 0124444445556666 789999999999999988
Q ss_pred HHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEE
Q 008003 253 MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
.+..++..+|++++|+|++.+...++...+..+...++|+++++||+|+...+.......+... ++..+-.+.+
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~------~~~~~~~~~i 153 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEA------FGRPVVPLQL 153 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHH------hCCCeEEEEe
Confidence 8889999999999999999998888888888888889999999999999766544444433321 1111222344
Q ss_pred eccCCCChhhHHH
Q 008003 333 SAVKKTGLDDLEV 345 (581)
Q Consensus 333 SAktg~gI~eLl~ 345 (581)
+..+|.|+..+.+
T Consensus 154 p~~~~~~~~~~vd 166 (268)
T cd04170 154 PIGEGDDFKGVVD 166 (268)
T ss_pred cccCCCceeEEEE
Confidence 4566666554433
No 245
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.67 E-value=1.2e-15 Score=142.01 Aligned_cols=152 Identities=21% Similarity=0.302 Sum_probs=102.3
Q ss_pred EEEEccCCCCcchHhhhhhcccc--cccccCceeEeeeeEEEeecCCeEEEEEeCCCcch----------hhHHHhhcc-
Q 008003 192 VTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA----------FSAMRKRGA- 258 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~~~--~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~----------~~~~~~~~~- 258 (581)
|+++|++|+|||||+|.|.+... ..+...+.|.+... +.. + ..+.+|||||+.. +......++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~-~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNV-N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEc-c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 79999999999999999995443 23334455555433 232 2 3899999999643 233333333
Q ss_pred --ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 259 --AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 259 --~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
...+++++++|.+........+.+..+...+.|+++++||+|+....... .........+.......+++++||++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELA--KALKEIKKELKLFEIDPPIILFSSLK 155 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHH--HHHHHHHHHHHhccCCCceEEEecCC
Confidence 35678999999987666666666777777789999999999996432111 11111111111122345899999999
Q ss_pred CCChhhHHHHHHH
Q 008003 337 KTGLDDLEVALLL 349 (581)
Q Consensus 337 g~gI~eLl~~L~~ 349 (581)
+.|+++++++|.+
T Consensus 156 ~~~~~~l~~~l~~ 168 (170)
T cd01876 156 GQGIDELRALIEK 168 (170)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999875
No 246
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.67 E-value=6.8e-16 Score=154.25 Aligned_cols=150 Identities=23% Similarity=0.236 Sum_probs=106.8
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh-------hHHHhhccccccE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-------SAMRKRGAAVTDI 263 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~-------~~~~~~~~~~aDi 263 (581)
+|+++|.||+|||||+|+|.+........+++|.+.....+.+ ++..+.+|||||+... .......++.+|+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 6899999999999999999998766666788888877777777 7899999999997432 2234467899999
Q ss_pred EEEEEeccCCCChh------------------------------------------HHHHHHH-H---------------
Q 008003 264 VVLVVAADDGVMPQ------------------------------------------TLEAIAH-A--------------- 285 (581)
Q Consensus 264 vllVvDa~~g~~~~------------------------------------------~~~~i~~-~--------------- 285 (581)
+++|+|+++..... +.+.+.. +
T Consensus 81 il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~ 160 (233)
T cd01896 81 ILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRED 160 (233)
T ss_pred EEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccC
Confidence 99999987632100 0011100 0
Q ss_pred ----------h--hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHHHH
Q 008003 286 ----------N--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM 353 (581)
Q Consensus 286 ----------~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~ 353 (581)
. ...+|+++|+||+|+.+. +... .+ . ...+++++||++|.|+++|++.|.....+
T Consensus 161 ~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~--~~~~-~~-------~---~~~~~~~~SA~~g~gi~~l~~~i~~~L~~ 227 (233)
T cd01896 161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISI--EELD-LL-------A---RQPNSVVISAEKGLNLDELKERIWDKLGL 227 (233)
T ss_pred CCHHHHHHHHhCCceEeeEEEEEECccCCCH--HHHH-HH-------h---cCCCEEEEcCCCCCCHHHHHHHHHHHhCc
Confidence 1 122589999999999632 2211 11 1 12358999999999999999999876554
Q ss_pred h
Q 008003 354 M 354 (581)
Q Consensus 354 ~ 354 (581)
.
T Consensus 228 i 228 (233)
T cd01896 228 I 228 (233)
T ss_pred E
Confidence 3
No 247
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.66 E-value=9.2e-16 Score=149.88 Aligned_cols=148 Identities=15% Similarity=0.156 Sum_probs=100.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec------CCeEEEEEeCCCcchhhHHHhhccccccE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS------TGASITFLDTPGHAAFSAMRKRGAAVTDI 263 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~------~g~~i~liDTpG~~~~~~~~~~~~~~aDi 263 (581)
.+|+++|.+++|||||+++|.+..+...+.+++..++....+.+. ..+.+.||||+|++.|..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 479999999999999999999988877666666555544444432 23678999999999999999999999999
Q ss_pred EEEEEeccCCCChhHHHH----HHHH-------------------hhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchh
Q 008003 264 VVLVVAADDGVMPQTLEA----IAHA-------------------NAANVPIVVAINKCDKPAADPERVKNQLGAEGLEL 320 (581)
Q Consensus 264 vllVvDa~~g~~~~~~~~----i~~~-------------------~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~ 320 (581)
+|+|+|.++....+.... +... ...++|+|+|+||+|+.+.........+...+...
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999998544333322 2211 11368999999999996431111111111111111
Q ss_pred hhcCCcceEEEEeccCCCC
Q 008003 321 EDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 321 ~~~~~~~~ii~iSAktg~g 339 (581)
.++ ..+.+..+|++...
T Consensus 161 ~~~--~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQG--NAEEINLNCTNGRL 177 (202)
T ss_pred Hhc--CCceEEEecCCccc
Confidence 222 34678888887643
No 248
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.65 E-value=1.6e-15 Score=148.53 Aligned_cols=159 Identities=25% Similarity=0.385 Sum_probs=106.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEee-cCCeEEEEEeCCCcchhhHHHhhccccc-cEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGM-STGASITFLDTPGHAAFSAMRKRGAAVT-DIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~-~~g~~i~liDTpG~~~~~~~~~~~~~~a-DivllV 267 (581)
++|+++|++|+|||||+++|....+..+. +.++.......... ..+..+.+||||||..+...+..+++.+ +++|+|
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V 79 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV 79 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence 57999999999999999999988665432 33333333333221 1467899999999999998888889898 999999
Q ss_pred EeccCCC--ChhHHHHHHH----H--hhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhc----------------------
Q 008003 268 VAADDGV--MPQTLEAIAH----A--NAANVPIVVAINKCDKPAADP-ERVKNQLGAE---------------------- 316 (581)
Q Consensus 268 vDa~~g~--~~~~~~~i~~----~--~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~---------------------- 316 (581)
+|+.+.. .....+.+.. . ...++|+++|+||+|+....+ +.++..+...
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~ 159 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSK 159 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9998742 1122222211 1 124789999999999975432 2222222110
Q ss_pred ---------cchhhhcCCcceEEEEeccCCC-ChhhHHHHHHH
Q 008003 317 ---------GLELEDWGGKVQVVEVSAVKKT-GLDDLEVALLL 349 (581)
Q Consensus 317 ---------~~~~~~~~~~~~ii~iSAktg~-gI~eLl~~L~~ 349 (581)
.+.+......+.++++|++.+. |++.+.+||..
T Consensus 160 ~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 160 ESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0011122245678999998876 69999988853
No 249
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.65 E-value=1.2e-15 Score=136.27 Aligned_cols=158 Identities=20% Similarity=0.249 Sum_probs=116.2
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
...+.++|--++|||||+|.+....+...-.| |+.+....+.- +...+.+||.||++.|..+++++.+.++++++|+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmip--tvGfnmrk~tk-gnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIP--TVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcc--cccceeEEecc-CceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 35689999999999999999987666543333 45555555553 6789999999999999999999999999999999
Q ss_pred eccCCC-ChhHHHHHHHH----hhcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 269 AADDGV-MPQTLEAIAHA----NAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 269 Da~~g~-~~~~~~~i~~~----~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
|+.++. .+-..+.+..+ .-.++|++|.+||.|++++- ...+...+.-..+. ..++.++.+||+...||+.
T Consensus 97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sit----dREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSIT----DREVCCFSISCKEKVNIDI 172 (186)
T ss_pred ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccc----cceEEEEEEEEcCCccHHH
Confidence 998832 22233333332 23579999999999998762 22222222111111 1356899999999999999
Q ss_pred HHHHHHHHHHH
Q 008003 343 LEVALLLQAEM 353 (581)
Q Consensus 343 Ll~~L~~~~~~ 353 (581)
+++||.++...
T Consensus 173 ~~~Wli~hsk~ 183 (186)
T KOG0075|consen 173 TLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHhhh
Confidence 99999987653
No 250
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.1e-15 Score=167.82 Aligned_cols=153 Identities=24% Similarity=0.330 Sum_probs=117.3
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh------HHHhhcc--cc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS------AMRKRGA--AV 260 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~------~~~~~~~--~~ 260 (581)
..+|+++|.||+|||||+|+|++.+..++..||+|.+..+..+.. .+..+.++|.||...+. ....+++ ..
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 456999999999999999999999999999999999999999988 78889999999954432 1222333 46
Q ss_pred ccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhH-HhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV-KNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 261 aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
.|+++-|+|+++ .+.....--++.+.++|+++++|++|.....--++ .+.+. +. -.+|++++||++|.|
T Consensus 82 ~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~------~~--LGvPVv~tvA~~g~G 151 (653)
T COG0370 82 PDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLS------KL--LGVPVVPTVAKRGEG 151 (653)
T ss_pred CCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHH------HH--hCCCEEEEEeecCCC
Confidence 799999999986 34445555667788999999999999843210000 01111 11 146999999999999
Q ss_pred hhhHHHHHHHHHH
Q 008003 340 LDDLEVALLLQAE 352 (581)
Q Consensus 340 I~eLl~~L~~~~~ 352 (581)
+++|++.+....+
T Consensus 152 ~~~l~~~i~~~~~ 164 (653)
T COG0370 152 LEELKRAIIELAE 164 (653)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987543
No 251
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.1e-16 Score=163.80 Aligned_cols=257 Identities=26% Similarity=0.334 Sum_probs=184.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc--------c----------ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT--------S----------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~--------~----------~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~ 248 (581)
.+..+|+|+.|.++||||...+++.- . .......|+|.......+.| .|+.++++|||||-
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpghv 113 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGHV 113 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCcc
Confidence 34568999999999999999988431 1 12234679999999999998 89999999999999
Q ss_pred hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhh----HHhhhhhc--------
Q 008003 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPER----VKNQLGAE-------- 316 (581)
Q Consensus 249 ~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~----~~~~l~~~-------- 316 (581)
+|.-..++.++.-|+++.|+|++.|+.+|++..|++..+.++|-++.+||||...++.+. +.+.+...
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi 193 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPI 193 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEecc
Confidence 999999999999999999999999999999999999999999999999999986544221 11111000
Q ss_pred ----cc-----------------------h----------------------------------------hhhcC-----
Q 008003 317 ----GL-----------------------E----------------------------------------LEDWG----- 324 (581)
Q Consensus 317 ----~~-----------------------~----------------------------------------~~~~~----- 324 (581)
++ . +.++.
T Consensus 194 ~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~ 273 (753)
T KOG0464|consen 194 GEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDK 273 (753)
T ss_pred cccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccc
Confidence 00 0 00000
Q ss_pred -----------------CcceEEEEeccCCCChhhHHHHHHHHHHHhhccc-----ccCCCcceEEEEEEeecCCCcEEE
Q 008003 325 -----------------GKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-----RVDGPAQAYVVEARLDKGRGPLTT 382 (581)
Q Consensus 325 -----------------~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~-----~~~~~~~~~V~e~~~~~~~G~v~~ 382 (581)
...++..-||.++.||+.|++++......++.+. .......+.-+.+..++.+|..++
T Consensus 274 i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyeflqwykddlcalafkvlhdkqrg~l~f 353 (753)
T KOG0464|consen 274 IDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSF 353 (753)
T ss_pred cCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhcccccCceeE
Confidence 1124666788899999999988865332222111 111223334455567888999999
Q ss_pred EEEeccEEeeCcEEEE--ccccceEEEE---EcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCC
Q 008003 383 AIVKAGTLVCGQHVVV--GHEWGRIRAI---RDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDS 445 (581)
Q Consensus 383 ~~V~~GtLk~gd~i~~--g~~~~kVk~i---~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~ 445 (581)
.++++|+++..-.|.. |.....+-.+ ..+....+....+|...-..|++.. ..||+++.-+.
T Consensus 354 mriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~t-atgdtivaska 420 (753)
T KOG0464|consen 354 MRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHT-ATGDTIVASKA 420 (753)
T ss_pred EEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceee-ccCCeEEecch
Confidence 9999999999888775 3333333222 2334456788888888888899876 79999875443
No 252
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.64 E-value=8.5e-16 Score=139.58 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=115.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
..++.++|++-+|||||+..+...++..-..|++..|+....+++..| .++.+|||+|++.|......+++++-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 357899999999999999999999998777787888887777776555 568899999999999999999999999999
Q ss_pred EEeccCCCChhHHHHHH----HHhh-cCCC-EEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQTLEAIA----HANA-ANVP-IVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~~~~i~----~~~~-~~~p-iIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|.++....+..+.|. .... ...+ +.+|+.|+||.+.. .+..+..+ .+... ....++++||++|.|+
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR--qVt~EEaE---klAa~-hgM~FVETSak~g~NV 161 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR--QVTAEEAE---KLAAS-HGMAFVETSAKNGCNV 161 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc--cccHHHHH---HHHHh-cCceEEEecccCCCcH
Confidence 99999854433333331 1111 2233 78899999996321 11111111 11111 1247999999999999
Q ss_pred hhHHHHHHHH
Q 008003 341 DDLEVALLLQ 350 (581)
Q Consensus 341 ~eLl~~L~~~ 350 (581)
++.+..|...
T Consensus 162 eEAF~mlaqe 171 (213)
T KOG0091|consen 162 EEAFDMLAQE 171 (213)
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 253
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.63 E-value=1.1e-15 Score=139.59 Aligned_cols=135 Identities=30% Similarity=0.373 Sum_probs=96.7
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCC----cchhhHHHhhccccccEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPG----HAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG----~~~~~~~~~~~~~~aDivl 265 (581)
.+|.++|++++|||||+++|.+...... -|+.+. + . =.++|||| ++.|..........||+++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~----KTq~i~-----~-~---~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK----KTQAIE-----Y-Y---DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC----ccceeE-----e-c---ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 4799999999999999999998765322 233331 1 1 13499999 3444444455667999999
Q ss_pred EEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC--CCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 266 LVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP--AADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~--~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
+|.|++++.....- .+....+.|+|=|+||+|+. +.+.++..+.+...+.. .+|++|+.+|+|+++|
T Consensus 69 ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~--------~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 69 LLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK--------EIFEVSAVTGEGIEEL 137 (143)
T ss_pred EEecCCCCCccCCc---hhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC--------CeEEEECCCCcCHHHH
Confidence 99999984321111 22334578999999999998 45556666666555442 5799999999999999
Q ss_pred HHHHH
Q 008003 344 EVALL 348 (581)
Q Consensus 344 l~~L~ 348 (581)
.++|.
T Consensus 138 ~~~L~ 142 (143)
T PF10662_consen 138 KDYLE 142 (143)
T ss_pred HHHHh
Confidence 99874
No 254
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.62 E-value=6.8e-15 Score=134.14 Aligned_cols=156 Identities=22% Similarity=0.236 Sum_probs=115.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
+..+|.|+|..|+||||++++|.+..... -..|..+....+.+ +++.+++||..|+..+...|..|+..+|++|+|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~---i~pt~gf~Iktl~~-~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDT---ISPTLGFQIKTLEY-KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccc---cCCccceeeEEEEe-cceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 46899999999999999999999876322 11355555666666 899999999999999999999999999999999
Q ss_pred EeccCCC-ChhHHHHHHHH----hhcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 268 VAADDGV-MPQTLEAIAHA----NAANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 268 vDa~~g~-~~~~~~~i~~~----~~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|.++.. ..+....+..+ +-.+.|++++.||.|+.++ +.+.+...+.-..+. ....++++-|||.+|+++.
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~---ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA---KSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc---cccCceEEEEeccccccHH
Confidence 9998743 33344444332 2357899999999999754 333333222111110 1134689999999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
+-++||...
T Consensus 168 ~gidWL~~~ 176 (185)
T KOG0073|consen 168 EGIDWLCDD 176 (185)
T ss_pred HHHHHHHHH
Confidence 988888753
No 255
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.62 E-value=3.4e-15 Score=151.56 Aligned_cols=238 Identities=24% Similarity=0.335 Sum_probs=163.6
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhccccccc--------------ccCceeEeeeeEEEee----------------
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAK--------------EAGGITQHMGAFVVGM---------------- 233 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~--------------~~~g~T~d~~~~~~~~---------------- 233 (581)
+...-..+|+++|.+++|||||+..|.+...... -..|-|..++...+.+
T Consensus 128 ~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~ 207 (641)
T KOG0463|consen 128 EKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHN 207 (641)
T ss_pred CccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCc
Confidence 3334457999999999999999998865322111 1112222221111111
Q ss_pred --------cCCeEEEEEeCCCcchhhHHHhhcc--ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCC
Q 008003 234 --------STGASITFLDTPGHAAFSAMRKRGA--AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 234 --------~~g~~i~liDTpG~~~~~~~~~~~~--~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~ 303 (581)
+...-++|+|.+||+.|......++ +..|...+++-++.|+...+.+++..+....+|+++|++|+|+..
T Consensus 208 LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 208 LDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred ccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCc
Confidence 0123589999999999988776555 567999999999999999999999999999999999999999986
Q ss_pred CChhh-HHhhh----hhccch---------------hhhcC--CcceEEEEeccCCCChhhHHHHHHHHHHHhhcccccC
Q 008003 304 ADPER-VKNQL----GAEGLE---------------LEDWG--GKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVD 361 (581)
Q Consensus 304 ~~~~~-~~~~l----~~~~~~---------------~~~~~--~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~ 361 (581)
++.-+ ....+ ...+.. ..++. .-+|+|.+|-.+|+|++-|...|..+. ++....++
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls--~R~~~~E~ 365 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLS--LRRQLNEN 365 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhhcC--cccccccC
Confidence 64311 11111 111100 00111 246899999999999988877665422 33345677
Q ss_pred CCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc-cc-----eEEEEEcccCCcccccCCCCc
Q 008003 362 GPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE-WG-----RIRAIRDMVGKSTDKARPAMP 424 (581)
Q Consensus 362 ~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~-~~-----kVk~i~~~~g~~v~~a~~~~~ 424 (581)
.|+...|.+.|+.+|.|+++.+...+|+++.+|.+.+|+. .| .|++|.. ..-++..+..|+.
T Consensus 366 ~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHR-KRMpV~~VrcGQt 433 (641)
T KOG0463|consen 366 DPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHR-KRMPVGIVRCGQT 433 (641)
T ss_pred CCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhh-ccccceEEeccch
Confidence 8899999999999999999999999999999999999864 23 3455542 3334444444443
No 256
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.62 E-value=4.9e-15 Score=145.77 Aligned_cols=162 Identities=19% Similarity=0.150 Sum_probs=115.3
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
.+|+++|++|+|||||+++|.+..+.....++++..+........ ....+.+|||+|+++|..++..++..++++++|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 799999999999999999999999887777776666666555442 2577999999999999999999999999999999
Q ss_pred eccC-CCChhHHHHH----HHHhhcCCCEEEEEeCCCCCCCChhhH--Hhh-------hhhccchhhhcCCcceEEEEec
Q 008003 269 AADD-GVMPQTLEAI----AHANAANVPIVVAINKCDKPAADPERV--KNQ-------LGAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 269 Da~~-g~~~~~~~~i----~~~~~~~~piIvViNK~Dl~~~~~~~~--~~~-------l~~~~~~~~~~~~~~~ii~iSA 334 (581)
|... ....+..+.| ......+.|+++|+||+|+........ ... ................++++|+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 165 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA 165 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence 9987 2222222222 222223589999999999975432111 100 0001111111111223899999
Q ss_pred c--CCCChhhHHHHHHHHH
Q 008003 335 V--KKTGLDDLEVALLLQA 351 (581)
Q Consensus 335 k--tg~gI~eLl~~L~~~~ 351 (581)
+ ++.|+.+++..+....
T Consensus 166 ~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 166 KSLTGPNVNELFKELLRKL 184 (219)
T ss_pred ccCCCcCHHHHHHHHHHHH
Confidence 9 9999999999887654
No 257
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=5.4e-15 Score=138.19 Aligned_cols=158 Identities=22% Similarity=0.251 Sum_probs=120.2
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
..+..+|+++|--|+||||++..|....+..+ .| |..+....+.+ .+..+++||..|+..+...+..++...+++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vP--TiGfnVE~v~y-kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VP--TIGFNVETVEY-KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CC--ccccceeEEEE-cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 34567999999999999999999988776654 44 44555666666 6899999999999999999999999999999
Q ss_pred EEEeccCCC-ChhHHHHH-HHHhh---cCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 266 LVVAADDGV-MPQTLEAI-AHANA---ANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 266 lVvDa~~g~-~~~~~~~i-~~~~~---~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
+|+|.++.. .....+.+ ..+.. .+.|+++..||.|++++ +..++.+.+.-..+.... ..+..++|.+|+|
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~----w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRN----WHIQSTCAISGEG 165 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCC----cEEeecccccccc
Confidence 999999832 22233333 22222 36899999999999865 444555544433333333 3688999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+.+-+++|....
T Consensus 166 L~egl~wl~~~~ 177 (181)
T KOG0070|consen 166 LYEGLDWLSNNL 177 (181)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 258
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.59 E-value=2e-15 Score=132.64 Aligned_cols=180 Identities=19% Similarity=0.273 Sum_probs=120.9
Q ss_pred EEccCCCCcchHhhhhhcccccc-cccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEecc
Q 008003 194 VMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAAD 271 (581)
Q Consensus 194 IvG~~n~GKSSLln~L~~~~~~~-~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~ 271 (581)
++|++++|||.|+-++....+.. +-+.++..|+....+..+ ...++++|||+|++.|.+....+++.||..++++|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999887765533 334455667666666552 3468899999999999999999999999999999998
Q ss_pred CCCChhH----HHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHH
Q 008003 272 DGVMPQT----LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVAL 347 (581)
Q Consensus 272 ~g~~~~~----~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L 347 (581)
+....+. +..+.......+.+.+++||||+... +.... +.+..+.+. -.+|++++||+||.|++..|-.|
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e---r~v~~--ddg~kla~~-y~ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE---RAVKR--DDGEKLAEA-YGIPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh---hcccc--chHHHHHHH-HCCCceeccccccccHhHHHHHH
Confidence 8544333 22233333445678999999999532 11100 001111100 13699999999999999999998
Q ss_pred HHHHHHhhcccccCCCcceEEEEEEeecCCCcEE
Q 008003 348 LLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLT 381 (581)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~ 381 (581)
.+.........++++.+.-. ++..+.++|.++
T Consensus 156 a~~l~k~~~~~~~~~~~~~~--~~v~~~~k~eia 187 (192)
T KOG0083|consen 156 AEELKKLKMGAPPEGEFADH--DSVADEGKGEIA 187 (192)
T ss_pred HHHHHHhccCCCCCCccccc--hhHHhcCCCccc
Confidence 87655555555555443322 223345556544
No 259
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.59 E-value=5.4e-15 Score=131.18 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=82.7
Q ss_pred EEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh---------hHHHhhcccc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF---------SAMRKRGAAV 260 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~---------~~~~~~~~~~ 260 (581)
+|+|+|.+|+|||||+|+|.+.+ ...+..+++|++.....+.+ ++..+.|+||||..+. .....+.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 68999999999999999999864 45667788888886666666 7889999999995321 1123344588
Q ss_pred ccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeC
Q 008003 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINK 298 (581)
Q Consensus 261 aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK 298 (581)
+|++++|+|+++.......+.+..+. .+.|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 99999999987744445566667775 78999999998
No 260
>COG2262 HflX GTPases [General function prediction only]
Probab=99.59 E-value=9.8e-15 Score=151.79 Aligned_cols=155 Identities=23% Similarity=0.319 Sum_probs=115.5
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCc---------chhhHHHhh
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH---------AAFSAMRKR 256 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~---------~~~~~~~~~ 256 (581)
...-+.|+++|-+|+|||||+|+|.+....+...-..|-|.....+.+++|..+.+.||-|. +.|....+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE- 267 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE- 267 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH-
Confidence 34568999999999999999999999888777778888888888888877899999999993 34444333
Q ss_pred ccccccEEEEEEeccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEE
Q 008003 257 GAAVTDIVVLVVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
....||++++|+|++++...+.. +.+..+....+|+|+|.||+|+..... ....+.. . .. ..+++
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~~~-------~-~~-~~v~i 336 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAELER-------G-SP-NPVFI 336 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhhhh-------c-CC-CeEEE
Confidence 45689999999999986332222 233344445689999999999864322 1111110 0 01 48999
Q ss_pred eccCCCChhhHHHHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~~~~ 352 (581)
||++|.|++.|++.|.....
T Consensus 337 SA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 337 SAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred EeccCcCHHHHHHHHHHHhh
Confidence 99999999999999987554
No 261
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=8.2e-15 Score=129.93 Aligned_cols=148 Identities=18% Similarity=0.196 Sum_probs=109.4
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.++-.|+|+.|+|||+|+..+...++......++...++...++.. ...++.+|||+|++.|......+++.|-.+++|
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv 90 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 90 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence 3578899999999999999999999887777777777777777663 346789999999999999999999999999999
Q ss_pred EeccCCCChh----HHHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 268 VAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 268 vDa~~g~~~~----~~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
+|.+....-. |+...+.+...+.-+++++||.||.... .++.++...+. ...|+++||++|+|+
T Consensus 91 yditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeen---------gl~fle~saktg~nv 161 (215)
T KOG0097|consen 91 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEEN---------GLMFLEASAKTGQNV 161 (215)
T ss_pred EEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhc---------CeEEEEecccccCcH
Confidence 9998743322 2222223333445589999999995321 12222222222 346899999999999
Q ss_pred hhHHH
Q 008003 341 DDLEV 345 (581)
Q Consensus 341 ~eLl~ 345 (581)
++.|-
T Consensus 162 edafl 166 (215)
T KOG0097|consen 162 EDAFL 166 (215)
T ss_pred HHHHH
Confidence 88653
No 262
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.58 E-value=1.9e-14 Score=139.84 Aligned_cols=159 Identities=23% Similarity=0.237 Sum_probs=117.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+..+|+++|.+|+|||+|..++....+...+.|++. |.....+.++ ....+.++||+|++.|..++..++..+|+.++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 457899999999999999999999999887766554 5555555553 33678899999999999999999999999999
Q ss_pred EEeccCCCChhHHHHH-HHH---h-hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 267 VVAADDGVMPQTLEAI-AHA---N-AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 267 VvDa~~g~~~~~~~~i-~~~---~-~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
||++++..+.+....+ ..+ . ...+|+++|+||+|+.... ..-.+.+..+... ..++++++||+...+++
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R-----~V~~eeg~~la~~-~~~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER-----QVSEEEGKALARS-WGCAFIETSAKLNYNVD 154 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc-----ccCHHHHHHHHHh-cCCcEEEeeccCCcCHH
Confidence 9999985444333222 222 1 2457999999999996421 1111111122111 24579999999999999
Q ss_pred hHHHHHHHHHHH
Q 008003 342 DLEVALLLQAEM 353 (581)
Q Consensus 342 eLl~~L~~~~~~ 353 (581)
++|..|......
T Consensus 155 ~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 155 EVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHh
Confidence 999999886654
No 263
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=1.7e-14 Score=145.87 Aligned_cols=158 Identities=22% Similarity=0.288 Sum_probs=113.1
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcc--hhhH---H---Hh
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA--AFSA---M---RK 255 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~--~~~~---~---~~ 255 (581)
...+..+.|+|.|.||||||||++.+.+.+..+.++|.||..+...++.. ++..++++||||.- .+.. . ..
T Consensus 163 ~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~IE~qAi 241 (346)
T COG1084 163 AIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEIERQAI 241 (346)
T ss_pred CCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHHHHHHH
Confidence 45567899999999999999999999999999999999999999999987 78899999999942 1111 1 11
Q ss_pred hcc-ccccEEEEEEeccC--CCChhH-HHHHHHHhh-cCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceE
Q 008003 256 RGA-AVTDIVVLVVAADD--GVMPQT-LEAIAHANA-ANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQV 329 (581)
Q Consensus 256 ~~~-~~aDivllVvDa~~--g~~~~~-~~~i~~~~~-~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~i 329 (581)
.++ .-+++++|++|.+. |...+. ...+..++. .+.|+++|+||+|..+. ..++....+...+ ....
T Consensus 242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~--------~~~~ 313 (346)
T COG1084 242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEG--------GEEP 313 (346)
T ss_pred HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhc--------cccc
Confidence 122 45789999999986 443322 333444432 35799999999999632 1222222222111 1235
Q ss_pred EEEeccCCCChhhHHHHHHHH
Q 008003 330 VEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 330 i~iSAktg~gI~eLl~~L~~~ 350 (581)
..+|+..+.+++.+.+.+...
T Consensus 314 ~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 314 LKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred cceeeeehhhHHHHHHHHHHH
Confidence 778999999999988887664
No 264
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.4e-15 Score=134.99 Aligned_cols=151 Identities=16% Similarity=0.130 Sum_probs=109.3
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-C---------CeEEEEEeCCCcchhhHHHhhccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-T---------GASITFLDTPGHAAFSAMRKRGAA 259 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~---------g~~i~liDTpG~~~~~~~~~~~~~ 259 (581)
++...+|++|+||||++.++...++...-+.++..|+.+..+.+. . ...+.+|||+|++.|.++...+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 356678999999999999999888876666667778877776553 1 157899999999999999999999
Q ss_pred cccEEEEEEeccCCCC-hhHHHHHHHHh----hcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEE
Q 008003 260 VTDIVVLVVAADDGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVE 331 (581)
Q Consensus 260 ~aDivllVvDa~~g~~-~~~~~~i~~~~----~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~ 331 (581)
.|-.+++++|.++... ......+.++. ..+..+++++||+||.+.. .++...... ++ .+|+|+
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~-------ky--glPYfE 160 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALAD-------KY--GLPYFE 160 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHH-------Hh--CCCeee
Confidence 9999999999987322 22233333333 2344599999999996431 111111111 11 359999
Q ss_pred EeccCCCChhhHHHHHHH
Q 008003 332 VSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 332 iSAktg~gI~eLl~~L~~ 349 (581)
+||-||.|+++..+.|..
T Consensus 161 TSA~tg~Nv~kave~Lld 178 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLD 178 (219)
T ss_pred eccccCcCHHHHHHHHHH
Confidence 999999999987766653
No 265
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.56 E-value=1.9e-14 Score=144.36 Aligned_cols=155 Identities=25% Similarity=0.247 Sum_probs=110.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-------hhHHHhhccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAA 259 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-------~~~~~~~~~~ 259 (581)
+....|.++|-||+|||||+|+|...+..+..++.||.......+.+++...+++-|.||.-. .....-+-+.
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 345679999999999999999999999888899999988877777775666699999999422 1222334567
Q ss_pred cccEEEEEEeccCCCC---hhHHHHH-HHHh-----hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEE
Q 008003 260 VTDIVVLVVAADDGVM---PQTLEAI-AHAN-----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVV 330 (581)
Q Consensus 260 ~aDivllVvDa~~g~~---~~~~~~i-~~~~-----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii 330 (581)
.|+.++||+|.+.+.. .+.+..+ ..+. ..+.|.++|+||+|++... +.....+... + ....++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-~~~l~~L~~~---l----q~~~V~ 345 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE-KNLLSSLAKR---L----QNPHVV 345 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH-HHHHHHHHHH---c----CCCcEE
Confidence 8999999999998621 2222221 1111 2467899999999996322 1111222211 1 122599
Q ss_pred EEeccCCCChhhHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~ 349 (581)
++||++++|+.+|++.|..
T Consensus 346 pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 346 PVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred EeeeccccchHHHHHHHhh
Confidence 9999999999999998864
No 266
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=139.29 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=118.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec--CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~--~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
...+++|+|+..+|||+|+..+....+...+.|++. |-....+..+ ....+.+|||+|+++|..++...+..+|++|
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 457899999999999999999999999888888777 4444445552 3356789999999999999988999999999
Q ss_pred EEEeccCCCC-----hhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhh---------hccchhhhcCCcceEEE
Q 008003 266 LVVAADDGVM-----PQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLG---------AEGLELEDWGGKVQVVE 331 (581)
Q Consensus 266 lVvDa~~g~~-----~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~---------~~~~~~~~~~~~~~ii~ 331 (581)
++|+..++.. ..|...+.+.. .++|+|+|++|.||... . .....+. +.+..+.+..+...+++
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d-~-~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~E 158 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDD-P-STLEKLQRQGLEPVTYEQGLELAKEIGAVKYLE 158 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhC-H-HHHHHHHhccCCcccHHHHHHHHHHhCcceeee
Confidence 9999887432 33333333332 57999999999999732 2 1111121 22333344445678999
Q ss_pred EeccCCCChhhHHHHHHHHH
Q 008003 332 VSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 332 iSAktg~gI~eLl~~L~~~~ 351 (581)
|||++..|+.+.|+.-...+
T Consensus 159 cSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 159 CSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred ehhhhhCCcHHHHHHHHHHH
Confidence 99999999999998776544
No 267
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.56 E-value=3.2e-15 Score=135.07 Aligned_cols=156 Identities=18% Similarity=0.154 Sum_probs=107.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
-.++++++|..=+|||||+-+++..++......+..-.+....+.+. ....+.+|||+|++.|..+-+-+++.+|.+++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 35799999999999999999998887754333222222223333331 23578999999999999999999999999999
Q ss_pred EEeccCCCChhHHH----HHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 267 VVAADDGVMPQTLE----AIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 267 VvDa~~g~~~~~~~----~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
|||+++....|-.. .++.+....+-+++|+||+||.....- ..++...+.. .. ...++++||+.+.||.+
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~V-t~qeAe~YAe---sv--GA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQV-TRQEAEAYAE---SV--GALYMETSAKDNVGISE 165 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhh-hHHHHHHHHH---hh--chhheecccccccCHHH
Confidence 99999865544333 233344445679999999999532110 0111111111 11 23689999999999999
Q ss_pred HHHHHHH
Q 008003 343 LEVALLL 349 (581)
Q Consensus 343 Ll~~L~~ 349 (581)
||+.|..
T Consensus 166 lFe~Lt~ 172 (218)
T KOG0088|consen 166 LFESLTA 172 (218)
T ss_pred HHHHHHH
Confidence 9998864
No 268
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.56 E-value=3.6e-14 Score=138.19 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=99.9
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccc-cc-c-C--ceeEeeeeEEEeecCCeEEEEEeCCCcchhhH-----HHhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVA-KE-A-G--GITQHMGAFVVGMSTGASITFLDTPGHAAFSA-----MRKRGA 258 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~-~~-~-~--g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~-----~~~~~~ 258 (581)
+++|+++|++|+|||||+|+|.+..... .. . + .+|..... +.......+.+|||||..+... +....+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHHHHHHHhCc
Confidence 4689999999999999999998854321 11 1 1 12322221 2211345799999999754221 223346
Q ss_pred ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh----------hhHHhhhhhccc-hhhhc-CCc
Q 008003 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP----------ERVKNQLGAEGL-ELEDW-GGK 326 (581)
Q Consensus 259 ~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~----------~~~~~~l~~~~~-~~~~~-~~~ 326 (581)
..+|++++|.| .+........+..+...+.|+++|+||+|+...+. +++.+.+.+.-. .+... ...
T Consensus 79 ~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 156 (197)
T cd04104 79 SEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSE 156 (197)
T ss_pred cCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 78899999854 34555666667777777899999999999943211 122222222111 11111 234
Q ss_pred ceEEEEecc--CCCChhhHHHHHHHH
Q 008003 327 VQVVEVSAV--KKTGLDDLEVALLLQ 350 (581)
Q Consensus 327 ~~ii~iSAk--tg~gI~eLl~~L~~~ 350 (581)
.+++.+|+. .+.|+..|.++|...
T Consensus 157 p~v~~vS~~~~~~~~~~~l~~~~~~~ 182 (197)
T cd04104 157 PPVFLVSNFDPSDYDFPKLRETLLKD 182 (197)
T ss_pred CCEEEEeCCChhhcChHHHHHHHHHH
Confidence 579999999 689999999998764
No 269
>PLN00023 GTP-binding protein; Provisional
Probab=99.55 E-value=3.2e-14 Score=146.41 Aligned_cols=119 Identities=20% Similarity=0.209 Sum_probs=89.8
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec--------------CCeEEEEEeCCCcchh
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--------------TGASITFLDTPGHAAF 250 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~--------------~g~~i~liDTpG~~~~ 250 (581)
......+|+++|+.|||||||+++|.+..+.....+++..++....+.+. ..+.+.||||+|++.|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 34556899999999999999999999988776666666666544444432 2366999999999999
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhH----HHHHHHHhh------------cCCCEEEEEeCCCCCC
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQT----LEAIAHANA------------ANVPIVVAINKCDKPA 303 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~----~~~i~~~~~------------~~~piIvViNK~Dl~~ 303 (581)
..++..+++.+|++|+|+|+++...... .+.+..... .++|+++|+||+||..
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 9999999999999999999998433322 222222110 1478999999999954
No 270
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.5e-13 Score=139.75 Aligned_cols=238 Identities=26% Similarity=0.307 Sum_probs=164.0
Q ss_pred CCEEEEEccCCCCcchHhhhhhccccccc--------------ccCceeEeeeeEEEeec--------------------
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAK--------------EAGGITQHMGAFVVGMS-------------------- 234 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~--------------~~~g~T~d~~~~~~~~~-------------------- 234 (581)
..+|+++|..++|||||+.-|.+...... -..|-|..+....+.++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 46999999999999999999966432211 11233332222222111
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccc--cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC-hhhHHh
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAA--VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD-PERVKN 311 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~--~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~-~~~~~~ 311 (581)
....++|+|.+||..|......++. ..|++++|++++.|....+.+++..+...++|++++++|+|+.+.. .++..+
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv~ 326 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTVK 326 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHHH
Confidence 1246899999999999887776654 4699999999999999999999999999999999999999997541 122222
Q ss_pred hhh----hccch-----------------hhhcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhcc---cccCCCcceE
Q 008003 312 QLG----AEGLE-----------------LEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLK---ARVDGPAQAY 367 (581)
Q Consensus 312 ~l~----~~~~~-----------------~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~---~~~~~~~~~~ 367 (581)
++. ..+.. ....+.-+|+|.+|..+|+|++-|...|.-+....... .-...+....
T Consensus 327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~~~e~~~L~q~~~eFq 406 (591)
T KOG1143|consen 327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGTAEERIQLVQLPAEFQ 406 (591)
T ss_pred HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcCChHHHHHHhcCcceee
Confidence 221 11110 00122456899999999999988777665321111000 0123456678
Q ss_pred EEEEEeecCCCcEEEEEEeccEEeeCcEEEEcccc----c--eEEEEEcccCCcccccCCCCcEEE
Q 008003 368 VVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW----G--RIRAIRDMVGKSTDKARPAMPVEI 427 (581)
Q Consensus 368 V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~----~--kVk~i~~~~g~~v~~a~~~~~v~i 427 (581)
|.|.|..+..|.++.|.+-.|.++.|+.+.+|+.. . .|-+|. .+...+.-..||+...+
T Consensus 407 vdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~-Rnr~acrvvraGqaAsl 471 (591)
T KOG1143|consen 407 VDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR-RNRQACRVVRAGQAASL 471 (591)
T ss_pred HhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee-ccccceeeecCccceee
Confidence 88999999999999999999999999999998642 2 345665 35566666666666655
No 271
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.51 E-value=1.9e-13 Score=132.84 Aligned_cols=160 Identities=16% Similarity=0.162 Sum_probs=106.3
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccc--cCceeEeeeeEEEeecCCeEEEEEeCCCcchhh-------HHH----hh
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKE--AGGITQHMGAFVVGMSTGASITFLDTPGHAAFS-------AMR----KR 256 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~--~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~-------~~~----~~ 256 (581)
++|+++|.+|+|||||+|+|++....... .++.|++.......+ ++..++++||||..+.. ... ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 47999999999999999999988654333 457888887777777 88999999999965432 111 12
Q ss_pred ccccccEEEEEEeccCCCChhHHHHHHHHhhc-C----CCEEEEEeCCCCCCCC-hhhHHhhh-hhccchhhhcCCcceE
Q 008003 257 GAAVTDIVVLVVAADDGVMPQTLEAIAHANAA-N----VPIVVAINKCDKPAAD-PERVKNQL-GAEGLELEDWGGKVQV 329 (581)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~-~----~piIvViNK~Dl~~~~-~~~~~~~l-~~~~~~~~~~~~~~~i 329 (581)
.....|++|+|+|+.. ....+...+..+... + .++++++|++|..... .+++.... .......+..++ .+
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~--r~ 156 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG--RY 156 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC--eE
Confidence 3467899999999987 666666666665432 2 5789999999976432 11111111 001111122222 22
Q ss_pred EEE-----eccCCCChhhHHHHHHHHHHH
Q 008003 330 VEV-----SAVKKTGLDDLEVALLLQAEM 353 (581)
Q Consensus 330 i~i-----SAktg~gI~eLl~~L~~~~~~ 353 (581)
+.. |+..+.++++|++.|..+...
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 233 366788999999999876643
No 272
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.51 E-value=1e-13 Score=139.64 Aligned_cols=153 Identities=23% Similarity=0.278 Sum_probs=113.9
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-h------hHHHhhcccccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-F------SAMRKRGAAVTD 262 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-~------~~~~~~~~~~aD 262 (581)
.+|+++|.|++|||||||.|.+....+...+.||.......+.+ +|..++++|+||.-. . .......++.||
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 58999999999999999999999999999999999999999998 899999999999422 1 123345679999
Q ss_pred EEEEEEeccCCCCh------------------------------------------hHHHHHHH----------------
Q 008003 263 IVVLVVAADDGVMP------------------------------------------QTLEAIAH---------------- 284 (581)
Q Consensus 263 ivllVvDa~~g~~~------------------------------------------~~~~~i~~---------------- 284 (581)
++++|+|+...... -+...++.
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~ 222 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE 222 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence 99999999853210 00111100
Q ss_pred ----------H--hhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHHH
Q 008003 285 ----------A--NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 285 ----------~--~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~ 352 (581)
+ ...-+|.++|+||+|+.+. +.+ ..+.+ ....+++||++|.|+++|.+.|.....
T Consensus 223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~--e~~-~~l~~----------~~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPGL--EEL-ERLAR----------KPNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred CCcHHHHHHHHhhcceeeeeEEEEecccccCH--HHH-HHHHh----------ccceEEEecccCCCHHHHHHHHHHhhC
Confidence 0 0123689999999999752 221 11111 126899999999999999999988776
Q ss_pred Hhhc
Q 008003 353 MMNL 356 (581)
Q Consensus 353 ~~~~ 356 (581)
+.+.
T Consensus 290 liRV 293 (365)
T COG1163 290 LIRV 293 (365)
T ss_pred eEEE
Confidence 5543
No 273
>PRK09866 hypothetical protein; Provisional
Probab=99.48 E-value=4.3e-13 Score=146.87 Aligned_cols=113 Identities=20% Similarity=0.202 Sum_probs=80.8
Q ss_pred eEEEEEeCCCcch-----hhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcC--CCEEEEEeCCCCCCCC---h
Q 008003 237 ASITFLDTPGHAA-----FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAAN--VPIVVAINKCDKPAAD---P 306 (581)
Q Consensus 237 ~~i~liDTpG~~~-----~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~--~piIvViNK~Dl~~~~---~ 306 (581)
..+.|+||||... +...+...+..+|++++|+|++.+....+...++.+...+ .|+++|+||+|+.+.. .
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence 4688999999532 3445566899999999999999877777777888777766 4999999999996422 2
Q ss_pred hhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 307 ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
+.+...+.... .........++||||++|.|+++|++.|....
T Consensus 310 E~Lle~V~~~L--~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 310 DQVRALISGTL--MKGCITPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred HHHHHHHHHHH--HhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 22322221110 00111234799999999999999999997643
No 274
>PTZ00099 rab6; Provisional
Probab=99.48 E-value=3.6e-13 Score=128.85 Aligned_cols=129 Identities=13% Similarity=0.092 Sum_probs=88.3
Q ss_pred ccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChh----HHHHHHHHhhc
Q 008003 214 LVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQ----TLEAIAHANAA 288 (581)
Q Consensus 214 ~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~----~~~~i~~~~~~ 288 (581)
+...+.+++..++....+.++ ....+.||||||++.|..++..+++.||++|+|+|+++....+ |+..+......
T Consensus 5 F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~ 84 (176)
T PTZ00099 5 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK 84 (176)
T ss_pred cCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 334455666666655555552 2478899999999999999999999999999999998843322 22222222224
Q ss_pred CCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 289 NVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 289 ~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
+.|+++|+||+||.... .+...... ..+ ...++++||++|.|++++|++|....
T Consensus 85 ~~piilVgNK~DL~~~~~v~~~e~~~~~-------~~~--~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 85 DVIIALVGNKTDLGDLRKVTYEEGMQKA-------QEY--NTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred CCeEEEEEECcccccccCCCHHHHHHHH-------HHc--CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999996321 11111110 111 24689999999999999999998754
No 275
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.48 E-value=5.5e-14 Score=124.69 Aligned_cols=109 Identities=28% Similarity=0.346 Sum_probs=73.7
Q ss_pred EEEEEccCCCCcchHhhhhhccccc----ccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLV----AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~----~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
||+|+|++|+|||||+++|.+.... .....+.+.......+.. ....+.|||++|.+.+.......+..+|++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceecccccchhhcCcEEEE
Confidence 6899999999999999999987665 222333333333333332 34468999999998887766666899999999
Q ss_pred EEeccCCCChhHH-HH---HHHHh--hcCCCEEEEEeCCC
Q 008003 267 VVAADDGVMPQTL-EA---IAHAN--AANVPIVVAINKCD 300 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~---i~~~~--~~~~piIvViNK~D 300 (581)
|+|+++....+.. +. +.... ..++|+++|+||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999974322221 11 22222 24689999999998
No 276
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2e-13 Score=125.76 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=112.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-ccc----ccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhcccccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAK----EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTD 262 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~----~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aD 262 (581)
....|.|+|.-|+|||||+.++..... ... ..-..|......++.. ++.++.|||..|++...+++..++..++
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQe~lrSlw~~yY~~~H 94 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQESLRSLWKKYYWLAH 94 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCChHHHHHHHHHHHHHhc
Confidence 346799999999999999999865422 100 1112344455556666 5889999999999999999999999999
Q ss_pred EEEEEEeccCCC-ChhH----HHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 263 IVVLVVAADDGV-MPQT----LEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 263 ivllVvDa~~g~-~~~~----~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
+++++||+++.. .+.. ...+..-...++|+++..||.|+.+.-. .++...+.. . -..-..+.++.||||.+
T Consensus 95 ~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~--e~~~~rd~~~~pvSal~ 171 (197)
T KOG0076|consen 95 GIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-A--ELIPRRDNPFQPVSALT 171 (197)
T ss_pred eeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-h--hhcCCccCccccchhhh
Confidence 999999999832 2211 2223333446899999999999965422 222222211 0 01112466899999999
Q ss_pred CCChhhHHHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQAE 352 (581)
Q Consensus 337 g~gI~eLl~~L~~~~~ 352 (581)
|+||++-.+|+....+
T Consensus 172 gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 172 GEGVKEGIEWLVKKLE 187 (197)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999987554
No 277
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.44 E-value=1.2e-12 Score=130.25 Aligned_cols=144 Identities=21% Similarity=0.253 Sum_probs=98.2
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc--ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccE
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS--LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDI 263 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~--~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDi 263 (581)
...+..|+++|++|+|||||++.|.+.. .......|+ ..+....+..++|+||||+- ......+..+|+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~------i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDv 106 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP------ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADL 106 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc------EEEEecCCceEEEEeCCchH---HHHHHHHHhcCE
Confidence 4567889999999999999999997642 122222332 11112267899999999953 223345688999
Q ss_pred EEEEEeccCCCChhHHHHHHHHhhcCCCE-EEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 264 VVLVVAADDGVMPQTLEAIAHANAANVPI-VVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 264 vllVvDa~~g~~~~~~~~i~~~~~~~~pi-IvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
+++|+|++.+...++...+..+...+.|. ++|+||+|+..... +.....+... ...++....+++++||++.-.+
T Consensus 107 VllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~--~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 107 VLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHR--FWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHH--HHHhhCCCCcEEEEeeccCCCC
Confidence 99999999988888888888887788894 55999999964321 2222222221 1112224568999999988544
No 278
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.44 E-value=8.5e-13 Score=137.34 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=62.2
Q ss_pred EEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEee---------------------c--CCeEEEEEeCCCc-
Q 008003 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGM---------------------S--TGASITFLDTPGH- 247 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~---------------------~--~g~~i~liDTpG~- 247 (581)
|+|+|.||+|||||+|+|++....+...|++|.+........ + ...++.+|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999998887777888887665433322 0 2368999999996
Q ss_pred ---chhhHHHh---hccccccEEEEEEeccC
Q 008003 248 ---AAFSAMRK---RGAAVTDIVVLVVAADD 272 (581)
Q Consensus 248 ---~~~~~~~~---~~~~~aDivllVvDa~~ 272 (581)
+.+..+.. ..++.||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 34444433 35899999999999973
No 279
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=4.9e-13 Score=132.50 Aligned_cols=165 Identities=21% Similarity=0.283 Sum_probs=110.9
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-------hhHHHhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGA 258 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-------~~~~~~~~~ 258 (581)
..++.+|.++|.+|+|||||+|+|.+........-|++.+.........++..++||||||.++ +.......+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 3467788899999999999999999765543332233333333333222678999999999765 555566788
Q ss_pred ccccEEEEEEeccCCCChhHHHHHHHHhh--cCCCEEEEEeCCCCCCC----C------hhhHHhhhhhccchh-hhcCC
Q 008003 259 AVTDIVVLVVAADDGVMPQTLEAIAHANA--ANVPIVVAINKCDKPAA----D------PERVKNQLGAEGLEL-EDWGG 325 (581)
Q Consensus 259 ~~aDivllVvDa~~g~~~~~~~~i~~~~~--~~~piIvViNK~Dl~~~----~------~~~~~~~l~~~~~~~-~~~~~ 325 (581)
...|++++++|+.+....-+.+.++.+.. .+.++++++|.+|.... + ....++.+.+..... +.+..
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~ 195 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE 195 (296)
T ss_pred hhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999766555666655432 35789999999998432 1 111222221111111 11112
Q ss_pred cceEEEEeccCCCChhhHHHHHHHH
Q 008003 326 KVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 326 ~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
--|++..|+..+.|++.|..++...
T Consensus 196 V~pV~~~~~r~~wgl~~l~~ali~~ 220 (296)
T COG3596 196 VKPVVAVSGRLPWGLKELVRALITA 220 (296)
T ss_pred cCCeEEeccccCccHHHHHHHHHHh
Confidence 3478999999999999999999864
No 280
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4e-13 Score=133.52 Aligned_cols=206 Identities=21% Similarity=0.279 Sum_probs=147.3
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc---cccccccCceeEeeeeEEEeec-------------------------------
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT---SLVAKEAGGITQHMGAFVVGMS------------------------------- 234 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~---~~~~~~~~g~T~d~~~~~~~~~------------------------------- 234 (581)
.++|+-+||+-+||||++.++.+- +|...-...+|...+.....+.
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 478999999999999999999763 2333334445554443221110
Q ss_pred C-----CeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccC-CCChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCChh
Q 008003 235 T-----GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD-GVMPQTLEAIAHANAANV-PIVVAINKCDKPAADPE 307 (581)
Q Consensus 235 ~-----g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~-g~~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~~~ 307 (581)
. -.++.|+|+|||.-....+..++...|.+++++.+++ -.++|+-+++....-+.. .++++-||+||...+.
T Consensus 118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~- 196 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQ- 196 (466)
T ss_pred CCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHH-
Confidence 0 0368899999999988888888899999999999987 468899998876655554 4899999999975432
Q ss_pred hHHhhhhhc-cchhhhcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecC--------CC
Q 008003 308 RVKNQLGAE-GLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKG--------RG 378 (581)
Q Consensus 308 ~~~~~l~~~-~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~--------~G 378 (581)
..++..+. .+.....-...|++|+||.-+.||+-+.++|.... +.+..+...|+...|+.+|.... +|
T Consensus 197 -A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI--PvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkG 273 (466)
T KOG0466|consen 197 -ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI--PVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKG 273 (466)
T ss_pred -HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC--CCCccccCCCCcEEEEEeeccCCCCchhhcccC
Confidence 11111111 11111122356999999999999999999998743 34444556677888888875432 57
Q ss_pred cEEEEEEeccEEeeCcEEEE
Q 008003 379 PLTTAIVKAGTLVCGQHVVV 398 (581)
Q Consensus 379 ~v~~~~V~~GtLk~gd~i~~ 398 (581)
-++.+.+..|.|+.||.|.+
T Consensus 274 gvaggsil~Gvlkvg~~IEi 293 (466)
T KOG0466|consen 274 GVAGGSILKGVLKVGQEIEI 293 (466)
T ss_pred ccccchhhhhhhhcCcEEEe
Confidence 78899999999999999987
No 281
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.42 E-value=1.4e-12 Score=132.68 Aligned_cols=158 Identities=25% Similarity=0.244 Sum_probs=108.1
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-------hhHHHhhcccccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAAVTD 262 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-------~~~~~~~~~~~aD 262 (581)
.-|.++|-||+|||||++.+...+.....+|.||....-..+....+..|++-|.||.-+ ..-..-+-+..+-
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 468999999999999999999999988899999988777777665677899999999421 1122234456789
Q ss_pred EEEEEEeccCCCC---hhHHHHH-HHHh-----hcCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEE
Q 008003 263 IVVLVVAADDGVM---PQTLEAI-AHAN-----AANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVE 331 (581)
Q Consensus 263 ivllVvDa~~g~~---~~~~~~i-~~~~-----~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~ 331 (581)
++++|+|++.... .++...+ ..+. -.++|.++|+||+|+..... +.....+... . .....++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~------~-~~~~~~~ 312 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA------L-GWEVFYL 312 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh------c-CCCccee
Confidence 9999999985321 2222222 2222 24689999999999653211 1112222111 1 1122333
Q ss_pred EeccCCCChhhHHHHHHHHHHHh
Q 008003 332 VSAVKKTGLDDLEVALLLQAEMM 354 (581)
Q Consensus 332 iSAktg~gI~eLl~~L~~~~~~~ 354 (581)
+||.+++|+++|+..+....+..
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 313 ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHHh
Confidence 99999999999999988765443
No 282
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.9e-12 Score=113.19 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=112.9
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
..+|+.+|-.++||||++..|.-..... ..| |..+....+.+ .+..+++||..|+......|.+++..+.++|||+
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ip--TvGFnvetVty-kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~ 92 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIP--TVGFNVETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 92 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcc-ccc--ccceeEEEEEe-eeeEEeeeeccCchhhhHHHHhhccCCceEEEEE
Confidence 5789999999999999999998765433 233 33445555666 7889999999999999999999999999999999
Q ss_pred eccCCC-ChhHHHHHHHHh----hcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 269 AADDGV-MPQTLEAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 269 Da~~g~-~~~~~~~i~~~~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
|+.+.. ..+.++.+..+. -...|+++..||.|++++ .++++...+.-....- ...-+.|+||.+|+|+.+
T Consensus 93 Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~----~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 93 DSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRD----RNWYVQPSCALSGDGLKE 168 (180)
T ss_pred eccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccC----CccEeeccccccchhHHH
Confidence 988742 222333332222 235789999999999876 4555544443222222 233678999999999999
Q ss_pred HHHHHHHH
Q 008003 343 LEVALLLQ 350 (581)
Q Consensus 343 Ll~~L~~~ 350 (581)
-+.||...
T Consensus 169 glswlsnn 176 (180)
T KOG0071|consen 169 GLSWLSNN 176 (180)
T ss_pred HHHHHHhh
Confidence 99998753
No 283
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=99.34 E-value=9.3e-12 Score=108.06 Aligned_cols=89 Identities=28% Similarity=0.381 Sum_probs=81.2
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccc----eEEEEEcccC----------CcccccCCCCcEEEe--
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWG----RIRAIRDMVG----------KSTDKARPAMPVEIE-- 428 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~----kVk~i~~~~g----------~~v~~a~~~~~v~i~-- 428 (581)
.+.|+|+..++|.|.++++++++|+|+.||+|++|+.+| |||+|++.++ +.++++.|+..+.|.
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 578999999999999999999999999999999999987 9999999988 489999977777665
Q ss_pred ccCCCCCCCCeEEEeCCHHHHHHHHH
Q 008003 429 GLKGLPMAGDDIIVVDSEERARMLSS 454 (581)
Q Consensus 429 gl~~~~~~Gd~~~~v~~~~~a~~~~~ 454 (581)
||.++ .+|+.|.++.++++|+++++
T Consensus 82 gL~~v-~aG~~~~vv~~e~~a~~~~~ 106 (110)
T cd03703 82 DLEKA-IAGSPLLVVGPEDEIEELKE 106 (110)
T ss_pred CCccc-cCCCEEEEECCHHHHHHHHH
Confidence 69999 99999999999999998865
No 284
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.31 E-value=5.2e-12 Score=112.50 Aligned_cols=156 Identities=20% Similarity=0.193 Sum_probs=112.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
++.++|.++|-.|+|||||+..|.+.+...- ..|..+....+...+.+++++||..|++.....|..++.+.|.+|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hl---tpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHL---TPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhc---cccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 5678999999999999999999998765321 1244456666666455999999999999999999999999999999
Q ss_pred EEeccCCCC-hhHH----HHHHHHhhcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVM-PQTL----EAIAHANAANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~-~~~~----~~i~~~~~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|.++.-. .+.- +.+...+...+|+.+..||.|+..+ ..++....+.-.++... ...+-.|||.+++|+
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdR----swhIq~csals~eg~ 167 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDR----SWHIQECSALSLEGS 167 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhc----eEEeeeCccccccCc
Confidence 999876321 2221 2222233456899999999999643 22232222222232222 247889999999999
Q ss_pred hhHHHHHHH
Q 008003 341 DDLEVALLL 349 (581)
Q Consensus 341 ~eLl~~L~~ 349 (581)
.+-.+|+..
T Consensus 168 ~dg~~wv~s 176 (185)
T KOG0074|consen 168 TDGSDWVQS 176 (185)
T ss_pred cCcchhhhc
Confidence 998888754
No 285
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.7e-11 Score=116.93 Aligned_cols=157 Identities=21% Similarity=0.215 Sum_probs=102.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccc---cccEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAA---VTDIV 264 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~---~aDiv 264 (581)
.+..|.++|..|+|||+|+-.|.......+ -+........+.+ +...++++|.|||.....-...++. .+-.+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~T---vtSiepn~a~~r~-gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGT---VTSIEPNEATYRL-GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCe---eeeeccceeeEee-cCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 346899999999999999999988743321 1222333444444 4556899999999988766665555 78999
Q ss_pred EEEEeccCC--CChhHHHHH----HHH--hhcCCCEEEEEeCCCCCCCChhhHHhhhhhcc-------------------
Q 008003 265 VLVVAADDG--VMPQTLEAI----AHA--NAANVPIVVAINKCDKPAADPERVKNQLGAEG------------------- 317 (581)
Q Consensus 265 llVvDa~~g--~~~~~~~~i----~~~--~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~------------------- 317 (581)
+||+|+..- .....-+.+ ... ...++|++++.||.|+..+.+.+..+...+..
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 999998751 111222222 111 23467899999999997665443332221110
Q ss_pred ------------chhhhcC-CcceEEEEeccCCCChhhHHHHHHH
Q 008003 318 ------------LELEDWG-GKVQVVEVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 318 ------------~~~~~~~-~~~~ii~iSAktg~gI~eLl~~L~~ 349 (581)
+.+.+.. ..+.|.+.|+++| +++++.+||.+
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~ 236 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIRE 236 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHH
Confidence 0011222 3567899999999 89999999875
No 286
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.30 E-value=2.4e-11 Score=130.17 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=62.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEee--------------------cC---CeEEEEEeCCC
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGM--------------------ST---GASITFLDTPG 246 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~--------------------~~---g~~i~liDTpG 246 (581)
.+|+|+|.||+|||||+|+|++..+.....+++|++........ .+ ..++.|+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999998887777788887766544331 11 25689999999
Q ss_pred cc----hhhHHH---hhccccccEEEEEEecc
Q 008003 247 HA----AFSAMR---KRGAAVTDIVVLVVAAD 271 (581)
Q Consensus 247 ~~----~~~~~~---~~~~~~aDivllVvDa~ 271 (581)
.. ....+. ...++.||++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 52 222222 33488999999999997
No 287
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.29 E-value=5.8e-12 Score=120.03 Aligned_cols=114 Identities=24% Similarity=0.331 Sum_probs=67.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEE--eecCCeEEEEEeCCCcchhhHHHhh---cccccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVV--GMSTGASITFLDTPGHAAFSAMRKR---GAAVTD 262 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~--~~~~g~~i~liDTpG~~~~~~~~~~---~~~~aD 262 (581)
+.+.|.|+|++|+|||+|+..|..+....+. |.-.....+ ....+..+.++|+|||......... +...+.
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~----tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k 77 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTV----TSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK 77 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B-------SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCee----ccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence 4578999999999999999999987543221 111111111 1125678999999999988765544 478899
Q ss_pred EEEEEEeccCCCChhHH---HHH----HHH--hhcCCCEEEEEeCCCCCCCCh
Q 008003 263 IVVLVVAADDGVMPQTL---EAI----AHA--NAANVPIVVAINKCDKPAADP 306 (581)
Q Consensus 263 ivllVvDa~~g~~~~~~---~~i----~~~--~~~~~piIvViNK~Dl~~~~~ 306 (581)
++|||+|++. ...+.. +.+ ... ...++|+++++||.|+..+.+
T Consensus 78 ~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 78 GIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred EEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 9999999974 111112 222 111 124678999999999976543
No 288
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=1.1e-12 Score=121.03 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=115.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+.++++|+|..++||||++.+++..-+...+..++..|+....+... ....+.+|||+|+++|......+++.|...+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 456899999999999999999999887777676667777766655442 4567889999999999999999999999999
Q ss_pred EEEeccCCCChhHHHHHH-HH--hhcCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 266 LVVAADDGVMPQTLEAIA-HA--NAANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~i~-~~--~~~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
||++.++....+....|. .. ....+|.++|-||+|+.+.+. ..+...... ....++.+|++...|
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~---------l~~RlyRtSvked~N 168 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKK---------LHKRLYRTSVKEDFN 168 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHH---------hhhhhhhhhhhhhhh
Confidence 999998854433322221 11 224799999999999974321 111111111 123578999999999
Q ss_pred hhhHHHHHHHH
Q 008003 340 LDDLEVALLLQ 350 (581)
Q Consensus 340 I~eLl~~L~~~ 350 (581)
+.+.|..|...
T Consensus 169 V~~vF~YLaeK 179 (246)
T KOG4252|consen 169 VMHVFAYLAEK 179 (246)
T ss_pred hHHHHHHHHHH
Confidence 99999998754
No 289
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.27 E-value=3.2e-11 Score=123.51 Aligned_cols=112 Identities=20% Similarity=0.319 Sum_probs=79.1
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccc----------cCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhH-----
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKE----------AGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSA----- 252 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~----------~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~----- 252 (581)
.+|+++|++|+|||||+|+|.+..+.... .++++.+.....+.. +| ..+++|||||..++..
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999987654331 223334444444444 45 5799999999543211
Q ss_pred ----------------H-----Hhhccc--cccEEEEEEeccC-CCChhHHHHHHHHhhcCCCEEEEEeCCCCCC
Q 008003 253 ----------------M-----RKRGAA--VTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 253 ----------------~-----~~~~~~--~aDivllVvDa~~-g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~ 303 (581)
. +...+. .+|+++++++.+. +..+.+.+.++.+.. ++|+|+|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCC
Confidence 0 001222 5788999998875 666777888888875 799999999999964
No 290
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.5e-11 Score=135.01 Aligned_cols=113 Identities=30% Similarity=0.434 Sum_probs=97.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccccc----------------ccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV----------------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~----------------~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~ 251 (581)
...+++++.|++||||||.+.|...+.. ....+|+|.......... .++.++|+|+|||-+|.
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPGHVDFS 86 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCCccchh
Confidence 3468999999999999999999653221 122467887777666554 78999999999999999
Q ss_pred HHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCC
Q 008003 252 AMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDK 301 (581)
Q Consensus 252 ~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl 301 (581)
.....+.+-+|++++++|+.+|+..||...++++...+...++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 99999999999999999999999999999999888888899999999994
No 291
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=2.8e-11 Score=108.30 Aligned_cols=156 Identities=24% Similarity=0.196 Sum_probs=108.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
+..++.++|-.|+||||++-++.-..... ..|++ .+....+.+ .+.++.+||..|+-.....|..++.+.|.+|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPti--gfnve~v~y-KNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTI--GFNVETVPY-KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCC--CcCcccccc-ccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 45689999999999999999986655432 23322 344455555 788999999999999999999999999999999
Q ss_pred EeccCCC--ChhHHHHHHHHhh---cCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 268 VAADDGV--MPQTLEAIAHANA---ANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 268 vDa~~g~--~~~~~~~i~~~~~---~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|.++.. .....+....+.+ .+..++++.||+|....-. .++.. ..+...- ....+.+|..||.+|+|++
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~---~L~l~~L-k~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLK---MLGLQKL-KDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHH---HhChHHH-hhheeEEEeeccccccCCc
Confidence 9998732 2222233333322 3456899999999865421 11111 1111100 0123589999999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
+..+||.+..
T Consensus 169 ~~~DWL~~~l 178 (182)
T KOG0072|consen 169 PAMDWLQRPL 178 (182)
T ss_pred HHHHHHHHHH
Confidence 9999997643
No 292
>PTZ00258 GTP-binding protein; Provisional
Probab=99.22 E-value=1.3e-10 Score=123.45 Aligned_cols=85 Identities=18% Similarity=0.116 Sum_probs=68.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC----------------CeEEEEEeCCCcch-
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST----------------GASITFLDTPGHAA- 249 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~----------------g~~i~liDTpG~~~- 249 (581)
..+.+|+|+|.||+|||||+|+|.+....+...|++|++.....+.+++ ..++.|+||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 5678999999999999999999999888888889999988887776532 23599999999432
Q ss_pred ------hhHHHhhccccccEEEEEEecc
Q 008003 250 ------FSAMRKRGAAVTDIVVLVVAAD 271 (581)
Q Consensus 250 ------~~~~~~~~~~~aDivllVvDa~ 271 (581)
........++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2222334568899999999984
No 293
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.21 E-value=3.2e-11 Score=105.66 Aligned_cols=137 Identities=25% Similarity=0.281 Sum_probs=94.5
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCc----chhhHHHhhccccccEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH----AAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~----~~~~~~~~~~~~~aDivl 265 (581)
.+++++|.+|+|||||++.|.+...... -|+-+ .+.. . -.+||||. +.+-.........+|+++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk----KTQAv---e~~d-~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK----KTQAV---EFND-K----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc----cccee---eccC-c----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 4799999999999999999998765432 12221 1111 1 24899993 222222334557899999
Q ss_pred EEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC-CCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 266 LVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP-AADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~-~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
+|-.++++.+.-.- .++.-...|+|-|++|.||. +.+.+..+..+.+.+ .-++|.+|+.+..|+++|+
T Consensus 70 ~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG--------a~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 70 YVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAG--------AEPIFETSAVDNQGVEELV 138 (148)
T ss_pred eeecccCccccCCc---ccccccccceEEEEecccccchHhHHHHHHHHHHcC--------CcceEEEeccCcccHHHHH
Confidence 99999885432211 11122346799999999997 555666666666555 2389999999999999999
Q ss_pred HHHHH
Q 008003 345 VALLL 349 (581)
Q Consensus 345 ~~L~~ 349 (581)
+.|..
T Consensus 139 ~~L~~ 143 (148)
T COG4917 139 DYLAS 143 (148)
T ss_pred HHHHh
Confidence 99865
No 294
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=4.3e-11 Score=129.38 Aligned_cols=116 Identities=36% Similarity=0.506 Sum_probs=95.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccc-----------------cccCceeEeeeeEEEeec----CCeEEEEEeCC
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-----------------KEAGGITQHMGAFVVGMS----TGASITFLDTP 245 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~-----------------~~~~g~T~d~~~~~~~~~----~g~~i~liDTp 245 (581)
.+..+|+++||-.+|||+|++.|..+.... ...+|.+......++... ..+-++++|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 345789999999999999999997643211 112455655555544432 34678999999
Q ss_pred CcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 246 G~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
||-.|...+...++.+|++++|+|+.+|++-++...++++...+.|+++|+||+|+.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 999999999999999999999999999999999999999999999999999999973
No 295
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.20 E-value=2.4e-11 Score=130.69 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=107.2
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccccccccc---CceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhcccccc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEA---GGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTD 262 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~---~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aD 262 (581)
-++..+|+++|+.|+|||||+-+|..+.+...-. +-++.- ..+ +++..+..++||+..++-.......++.||
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---adv-tPe~vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADV-TPENVPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---Ccc-CcCcCceEEEecccccchhHHHHHHHhhcC
Confidence 4567899999999999999999999987754322 223322 222 236678999999977666666677889999
Q ss_pred EEEEEEeccC-----CCChhHHHHHHHHhh--cCCCEEEEEeCCCCCCCChh---h-HHhhhhhccchhhhcCCcceEEE
Q 008003 263 IVVLVVAADD-----GVMPQTLEAIAHANA--ANVPIVVAINKCDKPAADPE---R-VKNQLGAEGLELEDWGGKVQVVE 331 (581)
Q Consensus 263 ivllVvDa~~-----g~~~~~~~~i~~~~~--~~~piIvViNK~Dl~~~~~~---~-~~~~l~~~~~~~~~~~~~~~ii~ 331 (581)
++++|++.++ +++..|+.+++.... .++|+|+|+||+|....+.. . ....+.++. .--.+|+
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~-------EiEtcie 154 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFA-------EIETCIE 154 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhH-------HHHHHHh
Confidence 9999998886 456667777766542 46899999999999654322 1 222222211 1125799
Q ss_pred EeccCCCChhhHHHHH
Q 008003 332 VSAVKKTGLDDLEVAL 347 (581)
Q Consensus 332 iSAktg~gI~eLl~~L 347 (581)
|||++-.++.+++..-
T Consensus 155 cSA~~~~n~~e~fYya 170 (625)
T KOG1707|consen 155 CSALTLANVSELFYYA 170 (625)
T ss_pred hhhhhhhhhHhhhhhh
Confidence 9999999998877543
No 296
>PRK13768 GTPase; Provisional
Probab=99.18 E-value=1.3e-10 Score=117.58 Aligned_cols=114 Identities=25% Similarity=0.318 Sum_probs=74.6
Q ss_pred eEEEEEeCCCcchhh---HHHh---hcccc--ccEEEEEEeccCCCChhHHHHHHHHh-----hcCCCEEEEEeCCCCCC
Q 008003 237 ASITFLDTPGHAAFS---AMRK---RGAAV--TDIVVLVVAADDGVMPQTLEAIAHAN-----AANVPIVVAINKCDKPA 303 (581)
Q Consensus 237 ~~i~liDTpG~~~~~---~~~~---~~~~~--aDivllVvDa~~g~~~~~~~~i~~~~-----~~~~piIvViNK~Dl~~ 303 (581)
..+.+|||||+.++. .... +.+.. ++++++|+|+..+..+.+......+. ..++|+++|+||+|+.+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 369999999975532 2221 22222 89999999998766666554443322 46899999999999975
Q ss_pred CCh-hhHHhhhhh-------cc--------------chhhhcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 304 ADP-ERVKNQLGA-------EG--------------LELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 304 ~~~-~~~~~~l~~-------~~--------------~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
.+. +.....+.. .. ..+...+...+++++||++++|+++|+++|...
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 432 222222221 00 012233444689999999999999999999764
No 297
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.17 E-value=2.9e-10 Score=114.58 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=82.4
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh--HH-------
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS--AM------- 253 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~--~~------- 253 (581)
+....+++|+++|.+|+|||||+|+|.+... .++...+.|.....+.... ++..++||||||..+.. ..
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 3455678999999999999999999999764 3444556677776666665 78999999999976542 10
Q ss_pred -Hhhcc--ccccEEEEEEeccC-CCChhHHHHHHHHhh-cC----CCEEEEEeCCCCCC
Q 008003 254 -RKRGA--AVTDIVVLVVAADD-GVMPQTLEAIAHANA-AN----VPIVVAINKCDKPA 303 (581)
Q Consensus 254 -~~~~~--~~aDivllVvDa~~-g~~~~~~~~i~~~~~-~~----~piIvViNK~Dl~~ 303 (581)
..+++ ...|++++|...+. .....+...++.+.. .+ .++++|+||+|...
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 11233 25788888876654 333444455544432 22 46999999999853
No 298
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.17 E-value=2.4e-10 Score=119.37 Aligned_cols=111 Identities=20% Similarity=0.253 Sum_probs=67.5
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHHhhh
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQL 313 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~~~l 313 (581)
.|+.+.|+||+|....... ....||++++|.+...|..-+... . ......-++|+||+|+..... ......+
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~-gi~E~aDIiVVNKaDl~~~~~a~~~~~el 219 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---K-GIMELADLIVINKADGDNKTAARRAAAEY 219 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---h-hhhhhhheEEeehhcccchhHHHHHHHHH
Confidence 3688999999997643322 356799999998644333222211 1 011223489999999975321 1222222
Q ss_pred hhc-cchh-hhcCCcceEEEEeccCCCChhhHHHHHHHHHH
Q 008003 314 GAE-GLEL-EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 314 ~~~-~~~~-~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~ 352 (581)
... .... ....+..|++++||++|.|+++|++.|.....
T Consensus 220 ~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 220 RSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 211 1100 00112358999999999999999999987655
No 299
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.8e-10 Score=107.85 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=116.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC-eEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG-ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g-~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
..+++++|..+.||||+.++.+...+..+..+++........+..+.| .++..|||+|++.+...+..++-.+.+++++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 578999999999999999999999888777776666665555554445 8999999999999999999999899999999
Q ss_pred EeccCCCCh----hHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 268 VAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 268 vDa~~g~~~----~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
+|......- .|.+.+.... .++|+++++||.|..... .. .....+ ....++.++++||+++.|.+.-
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~---~k----~k~v~~-~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK---VK----AKPVSF-HRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc---cc----ccccee-eecccceeEEeecccccccccc
Confidence 999875433 3333333222 369999999999985321 00 011111 1124568999999999999999
Q ss_pred HHHHHHHH
Q 008003 344 EVALLLQA 351 (581)
Q Consensus 344 l~~L~~~~ 351 (581)
|-++.+..
T Consensus 161 Fl~LarKl 168 (216)
T KOG0096|consen 161 FLWLARKL 168 (216)
T ss_pred hHHHhhhh
Confidence 99998643
No 300
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.15 E-value=1.2e-10 Score=114.88 Aligned_cols=169 Identities=25% Similarity=0.426 Sum_probs=103.6
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcccc-------------ccc--------------------------ccCceeE
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSL-------------VAK--------------------------EAGGITQ 224 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~-------------~~~--------------------------~~~g~T~ 224 (581)
....+++.|.++|..|+||||++.+|..--. ++. +.+||+.
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 3456788999999999999999999943110 000 1123332
Q ss_pred eeeeEEEeec----------CCeEEEEEeCCCc-chhh-----HHHhh--ccccccEEEEEEeccCCCChhHH-----HH
Q 008003 225 HMGAFVVGMS----------TGASITFLDTPGH-AAFS-----AMRKR--GAAVTDIVVLVVAADDGVMPQTL-----EA 281 (581)
Q Consensus 225 d~~~~~~~~~----------~g~~i~liDTpG~-~~~~-----~~~~~--~~~~aDivllVvDa~~g~~~~~~-----~~ 281 (581)
....+...++ +.....++||||+ +.|. ..... .....-++++|+|......+-++ ..
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 2211111110 2346899999996 3332 11111 22334678899998764444332 23
Q ss_pred HHHHhhcCCCEEEEEeCCCCCCCC--------hhhHHhhhhh------------ccchhhhcCCcceEEEEeccCCCChh
Q 008003 282 IAHANAANVPIVVAINKCDKPAAD--------PERVKNQLGA------------EGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 282 i~~~~~~~~piIvViNK~Dl~~~~--------~~~~~~~l~~------------~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
...+.+.+.|+|+|.||+|+.+.. .+.+.+.+.+ ..+.+.++-..+..+.+|+.||.|.+
T Consensus 174 cSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 174 CSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 345567789999999999997542 1223333321 12234455566789999999999999
Q ss_pred hHHHHHHHHHH
Q 008003 342 DLEVALLLQAE 352 (581)
Q Consensus 342 eLl~~L~~~~~ 352 (581)
+++.++....+
T Consensus 254 df~~av~~~vd 264 (366)
T KOG1532|consen 254 DFFTAVDESVD 264 (366)
T ss_pred HHHHHHHHHHH
Confidence 99999976544
No 301
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.14 E-value=6.1e-10 Score=111.32 Aligned_cols=128 Identities=17% Similarity=0.226 Sum_probs=86.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCce--------------------------------------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGI-------------------------------------------- 222 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~-------------------------------------------- 222 (581)
-..|.++++|+.++|||||+++|.+..+.....+.+
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 355789999999999999999998754221111111
Q ss_pred -------eEeeeeEEEeecCCeEEEEEeCCCcch-------------hhHHHhhccc-cccEEEEEEeccCCCChhH-HH
Q 008003 223 -------TQHMGAFVVGMSTGASITFLDTPGHAA-------------FSAMRKRGAA-VTDIVVLVVAADDGVMPQT-LE 280 (581)
Q Consensus 223 -------T~d~~~~~~~~~~g~~i~liDTpG~~~-------------~~~~~~~~~~-~aDivllVvDa~~g~~~~~-~~ 280 (581)
+.+.....+..++...++|+||||... ...+...+++ ..+++++|+|+..+...++ .+
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 122222222222346799999999642 1123445676 4569999999988877766 57
Q ss_pred HHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhh
Q 008003 281 AIAHANAANVPIVVAINKCDKPAADPERVKNQLGA 315 (581)
Q Consensus 281 ~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~ 315 (581)
..+.+...+.|+++|+||+|......+ +...+..
T Consensus 184 ia~~ld~~~~rti~ViTK~D~~~~~~~-~~~~~~~ 217 (240)
T smart00053 184 LAKEVDPQGERTIGVITKLDLMDEGTD-ARDILEN 217 (240)
T ss_pred HHHHHHHcCCcEEEEEECCCCCCccHH-HHHHHhC
Confidence 778888889999999999999754333 4444433
No 302
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.2e-10 Score=105.09 Aligned_cols=159 Identities=25% Similarity=0.264 Sum_probs=109.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
-.+.-+++++|-.|+|||||++.|..++..... .|.+.....+.+ .|.+++-+|..||..-...+..++..+|.++
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhv---PTlHPTSE~l~I-g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELSI-GGMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccccC---CCcCCChHHhee-cCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 345678999999999999999999998765422 244455555666 8899999999999999999999999999999
Q ss_pred EEEeccCC-CChhHHHHHHHHh----hcCCCEEEEEeCCCCCCCCh-hhHHhhhhhc------cc-hh-hhcCCcceEEE
Q 008003 266 LVVAADDG-VMPQTLEAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAE------GL-EL-EDWGGKVQVVE 331 (581)
Q Consensus 266 lVvDa~~g-~~~~~~~~i~~~~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~------~~-~~-~~~~~~~~ii~ 331 (581)
+.||+.+. ...+.++.+..+. -.++|+++.+||+|.+.+.. ++....+.-. +. .. ..-...+.++.
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 99999873 2233333333322 25789999999999986532 2222221110 10 00 11112345788
Q ss_pred EeccCCCChhhHHHHHH
Q 008003 332 VSAVKKTGLDDLEVALL 348 (581)
Q Consensus 332 iSAktg~gI~eLl~~L~ 348 (581)
||...+.|.-+-+.|+.
T Consensus 173 csi~~~~gy~e~fkwl~ 189 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLS 189 (193)
T ss_pred EEEEccCccceeeeehh
Confidence 88888888666665553
No 303
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.11 E-value=4.6e-10 Score=117.72 Aligned_cols=151 Identities=15% Similarity=0.260 Sum_probs=98.0
Q ss_pred CEEEEEccCCCCcchHhhhhhcc----ccc------------ccccCc---eeEeeee---EEEeecCC----eEEEEEe
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT----SLV------------AKEAGG---ITQHMGA---FVVGMSTG----ASITFLD 243 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~----~~~------------~~~~~g---~T~d~~~---~~~~~~~g----~~i~liD 243 (581)
+.|+++|+.|+|||||+|+|.+. ... +++.+| +|.+... ..+.+.-. .++.|+|
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlID 97 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVD 97 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEE
Confidence 67999999999999999999876 322 345677 7776655 33333222 7899999
Q ss_pred CCCcchhh--------H-----------------H----Hhhccc-cccEEEEEE-ecc------CCCChhHHHHHHHHh
Q 008003 244 TPGHAAFS--------A-----------------M----RKRGAA-VTDIVVLVV-AAD------DGVMPQTLEAIAHAN 286 (581)
Q Consensus 244 TpG~~~~~--------~-----------------~----~~~~~~-~aDivllVv-Da~------~g~~~~~~~~i~~~~ 286 (581)
|+|...-. . . ....+. .+|+.|+|. |.+ ++......+.+..++
T Consensus 98 cvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk 177 (492)
T TIGR02836 98 CVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELK 177 (492)
T ss_pred CCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHH
Confidence 99942211 0 0 123345 899999999 875 344555667788889
Q ss_pred hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCC--CChhhHHHHHH
Q 008003 287 AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK--TGLDDLEVALL 348 (581)
Q Consensus 287 ~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg--~gI~eLl~~L~ 348 (581)
..++|+++++||+|-...........+.+ .+ ++|++++||..- +.|..+++.+.
T Consensus 178 ~~~kPfiivlN~~dp~~~et~~l~~~l~e------ky--~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 178 ELNKPFIILLNSTHPYHPETEALRQELEE------KY--DVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred hcCCCEEEEEECcCCCCchhHHHHHHHHH------Hh--CCceEEEEHHHcCHHHHHHHHHHHH
Confidence 99999999999999432222222222211 11 257888888643 34444444443
No 304
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.10 E-value=1.7e-10 Score=116.20 Aligned_cols=150 Identities=27% Similarity=0.306 Sum_probs=109.4
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCc---------chhhHHH
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH---------AAFSAMR 254 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~---------~~~~~~~ 254 (581)
..-...+.|+++|-+|+|||||+++|.+......+.-.-|.|.......++.|..+.|.||-|. ..|....
T Consensus 173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATL 252 (410)
T ss_pred cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHH
Confidence 3344568999999999999999999997666666666677777777777778999999999993 3344433
Q ss_pred hhccccccEEEEEEeccCCCChhHHH-HHHHHhhcCCC-------EEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCc
Q 008003 255 KRGAAVTDIVVLVVAADDGVMPQTLE-AIAHANAANVP-------IVVAINKCDKPAADPERVKNQLGAEGLELEDWGGK 326 (581)
Q Consensus 255 ~~~~~~aDivllVvDa~~g~~~~~~~-~i~~~~~~~~p-------iIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~ 326 (581)
. ....+|+++.|+|++.+...+..+ .+.-++..++| +|=|-||+|......+. + .
T Consensus 253 e-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~------------E----~ 315 (410)
T KOG0410|consen 253 E-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------------E----K 315 (410)
T ss_pred H-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc------------c----c
Confidence 3 356799999999999876554443 34445555664 67788999985332111 0 0
Q ss_pred ceEEEEeccCCCChhhHHHHHHHH
Q 008003 327 VQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 327 ~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
...+++||++|+|++++++++...
T Consensus 316 n~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 316 NLDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred CCccccccccCccHHHHHHHHHHH
Confidence 126899999999999999988653
No 305
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.10 E-value=9.3e-10 Score=99.53 Aligned_cols=159 Identities=23% Similarity=0.224 Sum_probs=111.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchh-hHHHhhcccccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAF-SAMRKRGAAVTD 262 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~-~~~~~~~~~~aD 262 (581)
-+..+|+++|.-++|||+++..|.... ...++.-.|-.|+....++.+.| ..+.|+||+|.... ..+-..+++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 356799999999999999999997654 44455555666787788877655 47899999998877 455567889999
Q ss_pred EEEEEEeccCCCChhHHHHHHHHh-----hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 263 IVVLVVAADDGVMPQTLEAIAHAN-----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 263 ivllVvDa~~g~~~~~~~~i~~~~-----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
+++|||+..+....+-.+.++.-. ...+|++|++||+|+.+. .++...... .+.. ...+..++++|...
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p--~~vd~d~A~-~Wa~---rEkvkl~eVta~dR 160 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP--REVDMDVAQ-IWAK---REKVKLWEVTAMDR 160 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc--hhcCHHHHH-HHHh---hhheeEEEEEeccc
Confidence 999999998855555444443221 235799999999999522 111111110 0000 02357899999999
Q ss_pred CChhhHHHHHHHHH
Q 008003 338 TGLDDLEVALLLQA 351 (581)
Q Consensus 338 ~gI~eLl~~L~~~~ 351 (581)
..+-+.|..+....
T Consensus 161 ~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 161 PSLYEPFTYLASRL 174 (198)
T ss_pred hhhhhHHHHHHHhc
Confidence 98888888887543
No 306
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=99.09 E-value=4.1e-11 Score=104.97 Aligned_cols=47 Identities=9% Similarity=-0.078 Sum_probs=37.6
Q ss_pred ceeccCCCCCccc-----cccchHHhhhhh---ccCCccccCCCchhhhHhhcCc
Q 008003 15 VVASKSLKYAPSS-----ITTSAESSCSCL---QGLRYHDVSMKVSLIRCFHASP 61 (581)
Q Consensus 15 ~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~r~a~~Geft~raf~ngk 61 (581)
..++.|++|+... ++|+..+...+| ...|+|+|+|||||||||+|||
T Consensus 60 ~~f~~P~SyTGEd~vEi~~HGg~~v~~~il~~l~~~G~R~A~pGEFT~RAflNGK 114 (114)
T PF10396_consen 60 LYFPAPRSYTGEDVVEIHCHGGPAVVRRILEALLKAGARLAEPGEFTRRAFLNGK 114 (114)
T ss_dssp EEEBTTCSSSSSEEEEEEEESSHHHHHHHHHHHHHTT-EE--TTHHHHHHHHTTS
T ss_pred EeecCCCcccCCCEEEEEcCCCHHHHHHHHHHHHHcCceEcCCchhhHHHHhcCC
Confidence 5688999999854 489998888876 4569999999999999999998
No 307
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.09 E-value=5.6e-10 Score=101.14 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=113.7
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
..+|.++|++..|||||+-.+.++.............+....+.+. ....+.+||..|+++|..+.+-....+-+++++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 4689999999999999999999887754444444444555555551 235788999999999999999999999999999
Q ss_pred EeccCCCChhHH-HHHHHHhhcCCC--EEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 268 VAADDGVMPQTL-EAIAHANAANVP--IVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 268 vDa~~g~~~~~~-~~i~~~~~~~~p--iIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
+|.+........ +..++++..+.. -|+|++|.|+.-.-+.+....+......+.+. -+.+.+++|+....|+..+|
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~-mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKV-MNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHH-hCCcEEEeeccccccHHHHH
Confidence 999975433332 333445444322 36789999984322222333332222222211 23578999999999999999
Q ss_pred HHHHHHHHHhhccc
Q 008003 345 VALLLQAEMMNLKA 358 (581)
Q Consensus 345 ~~L~~~~~~~~~~~ 358 (581)
..+....--+.+..
T Consensus 179 K~vlAklFnL~~ti 192 (205)
T KOG1673|consen 179 KIVLAKLFNLPWTI 192 (205)
T ss_pred HHHHHHHhCCceec
Confidence 98765443333333
No 308
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.06 E-value=1.6e-09 Score=107.68 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=92.7
Q ss_pred EEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHH-----HhhccccccEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM-----RKRGAAVTDIV 264 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~-----~~~~~~~aDiv 264 (581)
||++||+.++||||..+.+.+... ..+..-+.|.++....+...+...+.+||.||+..+... +...++.++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 689999999999999999987643 333444677777777776546789999999998766554 45567899999
Q ss_pred EEEEeccCCCChhHHHHH----HHHh--hcCCCEEEEEeCCCCCCCChhh-HHhhh-hhccchhhhcC-CcceEEEEecc
Q 008003 265 VLVVAADDGVMPQTLEAI----AHAN--AANVPIVVAINKCDKPAADPER-VKNQL-GAEGLELEDWG-GKVQVVEVSAV 335 (581)
Q Consensus 265 llVvDa~~g~~~~~~~~i----~~~~--~~~~piIvViNK~Dl~~~~~~~-~~~~l-~~~~~~~~~~~-~~~~ii~iSAk 335 (581)
|+|+|+.+.....+...+ ..+. ..++.+.|.++|+|+...+... ..+.. ..........+ ..+.++.+|..
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~ 160 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIW 160 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TT
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCc
Confidence 999999843333333332 2222 3467799999999997532211 11111 11111111222 13688999998
Q ss_pred CCCChhhHHHHHHH
Q 008003 336 KKTGLDDLEVALLL 349 (581)
Q Consensus 336 tg~gI~eLl~~L~~ 349 (581)
.. .+-+.+..+..
T Consensus 161 D~-Sly~A~S~Ivq 173 (232)
T PF04670_consen 161 DE-SLYEAWSKIVQ 173 (232)
T ss_dssp ST-HHHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHH
Confidence 73 45555544443
No 309
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.05 E-value=2.1e-09 Score=110.41 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=75.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHh-------hcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRK-------RGA 258 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~-------~~~ 258 (581)
...++|+++|.+|+|||||+|+|.+.... .+...+.|.......... +|..+.+|||||..+...... .++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 45789999999999999999999988653 233333333333333334 789999999999765422111 111
Q ss_pred --ccccEEEEEEeccC-CCChhHHHHHHHHhh-----cCCCEEEEEeCCCCCC
Q 008003 259 --AVTDIVVLVVAADD-GVMPQTLEAIAHANA-----ANVPIVVAINKCDKPA 303 (581)
Q Consensus 259 --~~aDivllVvDa~~-g~~~~~~~~i~~~~~-----~~~piIvViNK~Dl~~ 303 (581)
...|++|+|...+. .....+...++.+.. .-.++|+++|++|...
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 25899999965543 233343444443332 1246999999999753
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.03 E-value=1.8e-09 Score=112.09 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=66.2
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhH-Hhhh
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV-KNQL 313 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~-~~~l 313 (581)
.++.+.|+||||...... ..+..+|.++++.+...+ ..+...... -.++|.++|+||+|+........ ...+
T Consensus 125 ~g~D~viidT~G~~~~e~---~i~~~aD~i~vv~~~~~~---~el~~~~~~-l~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 197 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSEV---DIANMADTFVVVTIPGTG---DDLQGIKAG-LMEIADIYVVNKADGEGATNVTIARLML 197 (300)
T ss_pred CCCCEEEEeCCCCchhhh---HHHHhhceEEEEecCCcc---HHHHHHHHH-HhhhccEEEEEcccccchhHHHHHHHHH
Confidence 368899999999643222 245678999888654332 222222211 13678899999999975432111 1111
Q ss_pred h-hccchhhh-cCCcceEEEEeccCCCChhhHHHHHHHHHH
Q 008003 314 G-AEGLELED-WGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 314 ~-~~~~~~~~-~~~~~~ii~iSAktg~gI~eLl~~L~~~~~ 352 (581)
. ........ .+...+++++||++|+|+++|+++|.....
T Consensus 198 ~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 198 ALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 00000011 111246999999999999999999987544
No 311
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.02 E-value=7e-10 Score=104.50 Aligned_cols=63 Identities=21% Similarity=0.391 Sum_probs=45.8
Q ss_pred eEEEEEeCCCcch----hhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhh-cCCCEEEEEeCC
Q 008003 237 ASITFLDTPGHAA----FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANA-ANVPIVVAINKC 299 (581)
Q Consensus 237 ~~i~liDTpG~~~----~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~-~~~piIvViNK~ 299 (581)
..+.|+||||... ...+...++..+|++|+|++++........+.+..... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3589999999643 22556678899999999999998776666665554443 444599999984
No 312
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.02 E-value=8.8e-10 Score=116.66 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=107.0
Q ss_pred CCCCCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-----hhHH-Hh
Q 008003 182 GTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-----FSAM-RK 255 (581)
Q Consensus 182 ~~~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-----~~~~-~~ 255 (581)
.....+..++++++|-||+|||||+|.+......+.+.+.||..+...++.+ .=..++++||||.-+ .... +.
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~IEmq 239 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNIIEMQ 239 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh-heeeeeecCCccccCcchhhhhHHHHH
Confidence 3345677889999999999999999999999998889999999888777766 556889999999421 1111 11
Q ss_pred ---hccccccEEEEEEeccC--CCChh-HHHHHHHHhh--cCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCc
Q 008003 256 ---RGAAVTDIVVLVVAADD--GVMPQ-TLEAIAHANA--ANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGK 326 (581)
Q Consensus 256 ---~~~~~aDivllVvDa~~--g~~~~-~~~~i~~~~~--~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~ 326 (581)
.-++---+|+++.|.+. |.... ....+..++. .+.|+|+|+||+|+... +.....+.+.+.- .. .+.
T Consensus 240 sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~---~~-~~~ 315 (620)
T KOG1490|consen 240 IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTI---ID-DGN 315 (620)
T ss_pred HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHH---Hh-ccC
Confidence 11122356899999986 44322 2233333332 47899999999999643 2222222222111 11 134
Q ss_pred ceEEEEeccCCCChhhHHH
Q 008003 327 VQVVEVSAVKKTGLDDLEV 345 (581)
Q Consensus 327 ~~ii~iSAktg~gI~eLl~ 345 (581)
++++.+|+.+.+|+-++..
T Consensus 316 v~v~~tS~~~eegVm~Vrt 334 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRT 334 (620)
T ss_pred ceEEEecccchhceeeHHH
Confidence 6899999999999987544
No 313
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.99 E-value=1.3e-09 Score=108.23 Aligned_cols=160 Identities=27% Similarity=0.317 Sum_probs=111.3
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccccc---ccccCceeEeeeeEEEeecCCeEEEEEeCCCc----------chhhH
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLV---AKEAGGITQHMGAFVVGMSTGASITFLDTPGH----------AAFSA 252 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~---~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~----------~~~~~ 252 (581)
..+.+.++++|.+|+|||||+|.+...... .+..+|-|+.+..+.+ |..+.++|.||. .++..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v----~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV----GKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec----cceEEEEecCCcccccCCccCcchHhH
Confidence 356789999999999999999999875432 3336778887766665 458999999992 34444
Q ss_pred HHhhcc---ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh---hhHHhhhhh--ccchhhhcC
Q 008003 253 MRKRGA---AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP---ERVKNQLGA--EGLELEDWG 324 (581)
Q Consensus 253 ~~~~~~---~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~---~~~~~~l~~--~~~~~~~~~ 324 (581)
+...++ ++-=.+++.+|++.++.+-+...+.++...++|+.+|.||||....-. ......+.. .++...-+.
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~ 288 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFL 288 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcccccee
Confidence 544443 233456788899999999999999999999999999999999853211 000000000 011111112
Q ss_pred CcceEEEEeccCCCChhhHHHHHHH
Q 008003 325 GKVQVVEVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 325 ~~~~ii~iSAktg~gI~eLl~~L~~ 349 (581)
-..|++.+|+.|+.|+++|+-.|..
T Consensus 289 ~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 289 VDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccCCceeeecccccCceeeeeehhh
Confidence 2457788999999999999876654
No 314
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.96 E-value=1.4e-09 Score=109.07 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=59.5
Q ss_pred EEEEEeCCCcchhhHHHhh------cc--ccccEEEEEEeccCCCChhHHH-----HHHHHhhcCCCEEEEEeCCCCCCC
Q 008003 238 SITFLDTPGHAAFSAMRKR------GA--AVTDIVVLVVAADDGVMPQTLE-----AIAHANAANVPIVVAINKCDKPAA 304 (581)
Q Consensus 238 ~i~liDTpG~~~~~~~~~~------~~--~~aDivllVvDa~~g~~~~~~~-----~i~~~~~~~~piIvViNK~Dl~~~ 304 (581)
.+.++|||||-++-..+.. .+ ...=++++++|+..-..+...- .+......+.|.|.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 6999999998776544432 22 3456889999987543333221 112223468999999999999752
Q ss_pred ChhhHHhhh------------------hhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 305 DPERVKNQL------------------GAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 305 ~~~~~~~~l------------------~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
..+...... ......+..++....++++|+.+++|+++|+..|.+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 211111110 0111112333333489999999999999999988764
No 315
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.95 E-value=2.5e-09 Score=105.01 Aligned_cols=148 Identities=17% Similarity=0.179 Sum_probs=84.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc---c----cccccCceeEeee------eEEEeec--------------------
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS---L----VAKEAGGITQHMG------AFVVGMS-------------------- 234 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~---~----~~~~~~g~T~d~~------~~~~~~~-------------------- 234 (581)
..+.|+++|++|+|||||++++.... . ...+. +.+.|.. ...+.+.
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~-~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDV-ITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCC-CCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 46789999999999999999996531 0 11110 0000000 0000000
Q ss_pred -CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh---hhHH
Q 008003 235 -TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP---ERVK 310 (581)
Q Consensus 235 -~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~---~~~~ 310 (581)
.+..+.|++|.|.-.. ...+....+..+.|+|+.++..... ......+.|.++++||+|+.+... ....
T Consensus 100 ~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~ 172 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEAVGFDVEKMK 172 (207)
T ss_pred cCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccccchhhHHHHH
Confidence 1346778888882100 0111123455667888875432211 111223568899999999975322 1222
Q ss_pred hhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 311 NQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 311 ~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
..+. ......+++++||++|.|++++++++...
T Consensus 173 ~~l~-------~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 173 ADAK-------KINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHH-------HhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 2222 12234689999999999999999999763
No 316
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.94 E-value=2.2e-09 Score=113.05 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=86.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc-----ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH-----HHhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS-----LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA-----MRKRG 257 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~-----~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~-----~~~~~ 257 (581)
.+.+|+|+|.+|+|||||+|+|++-. .+.+....||.....+.. ++-..++|||.||...... +..-.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~--p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH--PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC--CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 46799999999999999999998621 221111224444444443 3445799999999643221 12235
Q ss_pred cccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC----------CCChhhHHhhhhhccc-hhhhcC-C
Q 008003 258 AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP----------AADPERVKNQLGAEGL-ELEDWG-G 325 (581)
Q Consensus 258 ~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~----------~~~~~~~~~~l~~~~~-~~~~~~-~ 325 (581)
+...|++|++.+. .....+......+...++|+.+|.+|+|.. ..+.+++.+.+.+... .+...+ .
T Consensus 112 ~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~ 189 (376)
T PF05049_consen 112 FYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS 189 (376)
T ss_dssp GGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S
T ss_pred ccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 6788988887643 455666777788888999999999999961 1122233333322211 112222 3
Q ss_pred cceEEEEeccCC--CChhhHHHHHHH
Q 008003 326 KVQVVEVSAVKK--TGLDDLEVALLL 349 (581)
Q Consensus 326 ~~~ii~iSAktg--~gI~eLl~~L~~ 349 (581)
..++|-+|+..- .....|.++|..
T Consensus 190 ~P~VFLVS~~dl~~yDFp~L~~tL~~ 215 (376)
T PF05049_consen 190 EPQVFLVSSFDLSKYDFPKLEETLEK 215 (376)
T ss_dssp S--EEEB-TTTTTSTTHHHHHHHHHH
T ss_pred cCceEEEeCCCcccCChHHHHHHHHH
Confidence 457999999864 456678888865
No 317
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.92 E-value=4.5e-09 Score=102.59 Aligned_cols=99 Identities=15% Similarity=0.216 Sum_probs=61.6
Q ss_pred CeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCE--EEEEeCCCCCCC---ChhhHH
Q 008003 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPI--VVAINKCDKPAA---DPERVK 310 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~pi--IvViNK~Dl~~~---~~~~~~ 310 (581)
+...++++|.|..-..... ...+|.++.|+|+.++...+.. . ...+.. ++++||+|+.+. +.+.+.
T Consensus 91 ~~D~iiIEt~G~~l~~~~~---~~l~~~~i~vvD~~~~~~~~~~-~-----~~qi~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFS---PELADLTIFVIDVAAGDKIPRK-G-----GPGITRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CCCEEEEECCCCCcccccc---hhhhCcEEEEEEcchhhhhhhh-h-----HhHhhhccEEEEEhhhccccccccHHHHH
Confidence 4567788888832111111 1126889999999875442211 0 112333 899999999742 222223
Q ss_pred hhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 311 NQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 311 ~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
+.+... .+..+++++||++|+|+++++++|.+.
T Consensus 162 ~~~~~~-------~~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 162 RDAKKM-------RGEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred HHHHHh-------CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 333222 235689999999999999999999753
No 318
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.91 E-value=2.4e-09 Score=107.71 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=98.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc------ccc---ccc----cC-----------ceeEeeeeEEEeec--------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT------SLV---AKE----AG-----------GITQHMGAFVVGMS-------- 234 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~------~~~---~~~----~~-----------g~T~d~~~~~~~~~-------- 234 (581)
.+..+|+|.|.||+|||||+..|... ++. +.+ .+ .++.+...+.-..+
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 45679999999999999999998431 111 110 00 12223333322221
Q ss_pred -------------CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCC
Q 008003 235 -------------TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDK 301 (581)
Q Consensus 235 -------------~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl 301 (581)
.|+.+.|+.|-|.-...... ...+|.+++|.-..-|..-|.+..= -..+-=|+|+||.|+
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~GD~~Q~iK~G----imEiaDi~vINKaD~ 201 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAGDDLQGIKAG----IMEIADIIVINKADR 201 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH---hhhcceEEEEecCCCCcHHHHHHhh----hhhhhheeeEeccCh
Confidence 36789999999854333222 3468999999876666554443210 012344899999997
Q ss_pred CCCCh--hhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhc
Q 008003 302 PAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL 356 (581)
Q Consensus 302 ~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~ 356 (581)
.++.. ..+...+..........++..|++.+||.+|+|+++|+++|....+....
T Consensus 202 ~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 202 KGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred hhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 54321 11122222111123334456799999999999999999999887665543
No 319
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.90 E-value=4.4e-09 Score=103.68 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=91.5
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccc--cCceeEeeeeEEEeecCCeEEEEEeCCCcchhh-------HHHh----h
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKE--AGGITQHMGAFVVGMSTGASITFLDTPGHAAFS-------AMRK----R 256 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~--~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~-------~~~~----~ 256 (581)
++|+++|.+|+||||+.|.|++.....+. ..+.|.......... +|..++++||||.-+.. .... .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 37999999999999999999987754332 334566666666666 89999999999953211 1111 2
Q ss_pred ccccccEEEEEEeccCCCChhHHHHHHHHhh-cC----CCEEEEEeCCCCCCCC-hhhHHhhhh--hccchhhhcCCcce
Q 008003 257 GAAVTDIVVLVVAADDGVMPQTLEAIAHANA-AN----VPIVVAINKCDKPAAD-PERVKNQLG--AEGLELEDWGGKVQ 328 (581)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~~~~~~i~~~~~-~~----~piIvViNK~Dl~~~~-~~~~~~~l~--~~~~~~~~~~~~~~ 328 (581)
.....+++|||+..+ .........+..+.. .+ ..+|||.|..|..... .+++..... .........++ .
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~--R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG--R 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--C
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--E
Confidence 345689999999988 566666666554432 12 2488899988875432 222222110 01112233333 3
Q ss_pred EEEEecc------CCCChhhHHHHHHHHHH
Q 008003 329 VVEVSAV------KKTGLDDLEVALLLQAE 352 (581)
Q Consensus 329 ii~iSAk------tg~gI~eLl~~L~~~~~ 352 (581)
++.++.+ ....+.+|++.|..+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~ 186 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQ 186 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHH
Confidence 4544444 23456778777766543
No 320
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.89 E-value=2.3e-09 Score=109.23 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=63.8
Q ss_pred EEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC----------------eEEEEEeCCCcch------
Q 008003 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG----------------ASITFLDTPGHAA------ 249 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g----------------~~i~liDTpG~~~------ 249 (581)
|+|+|.||+|||||+|+|++.+......|++|++.....+.+++. ..+.|+||||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999999888888899999888777766332 1599999999432
Q ss_pred -hhHHHhhccccccEEEEEEeccC
Q 008003 250 -FSAMRKRGAAVTDIVVLVVAADD 272 (581)
Q Consensus 250 -~~~~~~~~~~~aDivllVvDa~~ 272 (581)
........++.+|++++|+|+..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcC
Confidence 22223345678999999999864
No 321
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.89 E-value=3.6e-09 Score=111.36 Aligned_cols=82 Identities=23% Similarity=0.205 Sum_probs=65.1
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC----------------eEEEEEeCCCcch----
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG----------------ASITFLDTPGHAA---- 249 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g----------------~~i~liDTpG~~~---- 249 (581)
++|+|+|.||+|||||+|+|.+........|++|++.....+.+++. ..+.|+||||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999998887788899998887766665332 2599999999432
Q ss_pred ---hhHHHhhccccccEEEEEEecc
Q 008003 250 ---FSAMRKRGAAVTDIVVLVVAAD 271 (581)
Q Consensus 250 ---~~~~~~~~~~~aDivllVvDa~ 271 (581)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1222334578999999999985
No 322
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.87 E-value=3.6e-09 Score=105.24 Aligned_cols=156 Identities=26% Similarity=0.405 Sum_probs=86.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc------ccc---cccc-C---c-----------eeEeeeeEEEeec---------
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT------SLV---AKEA-G---G-----------ITQHMGAFVVGMS--------- 234 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~------~~~---~~~~-~---g-----------~T~d~~~~~~~~~--------- 234 (581)
+..+|+|.|+||+|||||+++|... ++. +.+. | | .+.|...+.-...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4679999999999999999998431 111 1100 0 0 0112222221111
Q ss_pred ------------CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHH--HHHHHhhcCCCEEEEEeCCC
Q 008003 235 ------------TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE--AIAHANAANVPIVVAINKCD 300 (581)
Q Consensus 235 ------------~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~--~i~~~~~~~~piIvViNK~D 300 (581)
.|+.+.|+.|.|.-...... ...+|.+++|+-...|..-|... .+. +.=|+|+||+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---~~~aD~~v~v~~Pg~GD~iQ~~KaGimE------iaDi~vVNKaD 178 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---ADMADTVVLVLVPGLGDEIQAIKAGIME------IADIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---HTTSSEEEEEEESSTCCCCCTB-TTHHH------H-SEEEEE--S
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---HHhcCeEEEEecCCCccHHHHHhhhhhh------hccEEEEeCCC
Confidence 36789999999843332222 35789999999877665544432 222 24489999999
Q ss_pred CCCCChhhHHhhhhhc-cchh-hhcCCcceEEEEeccCCCChhhHHHHHHHHHHHh
Q 008003 301 KPAADPERVKNQLGAE-GLEL-EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMM 354 (581)
Q Consensus 301 l~~~~~~~~~~~l~~~-~~~~-~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~ 354 (581)
+..+ ++...++... .+.. ....+..|++.+||.+|.|+++|+++|....+.+
T Consensus 179 ~~gA--~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 179 RPGA--DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp HHHH--HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hHHH--HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 7532 2222222111 1000 0112346999999999999999999998765544
No 323
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2.2e-08 Score=104.11 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=67.2
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-----------------CeEEEEEeCCCc----
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-----------------GASITFLDTPGH---- 247 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-----------------g~~i~liDTpG~---- 247 (581)
.++++|+|.||||||||+|+|+.........|.+|.+.....+..++ ..++.|+|.||.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999999887778899999988776665431 136889999993
Q ss_pred ---chhhHHHhhccccccEEEEEEeccC
Q 008003 248 ---AAFSAMRKRGAAVTDIVVLVVAADD 272 (581)
Q Consensus 248 ---~~~~~~~~~~~~~aDivllVvDa~~ 272 (581)
+......-.-++.+|+++.|+|+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3344455566789999999999874
No 324
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.83 E-value=5.6e-09 Score=99.26 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=49.8
Q ss_pred EEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCC---CChhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 263 IVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA---ADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 263 ivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~---~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
.-|+|+|++.|....-.-.-. .-..=++|+||.|+.+ .+.+...+. .....+..+++++|++||+|
T Consensus 120 ~~v~VidvteGe~~P~K~gP~----i~~aDllVInK~DLa~~v~~dlevm~~d-------a~~~np~~~ii~~n~ktg~G 188 (202)
T COG0378 120 LRVVVIDVTEGEDIPRKGGPG----IFKADLLVINKTDLAPYVGADLEVMARD-------AKEVNPEAPIIFTNLKTGEG 188 (202)
T ss_pred eEEEEEECCCCCCCcccCCCc----eeEeeEEEEehHHhHHHhCccHHHHHHH-------HHHhCCCCCEEEEeCCCCcC
Confidence 788999998865422110000 0012478999999953 233333222 23344677999999999999
Q ss_pred hhhHHHHHHHH
Q 008003 340 LDDLEVALLLQ 350 (581)
Q Consensus 340 I~eLl~~L~~~ 350 (581)
++++++++...
T Consensus 189 ~~~~~~~i~~~ 199 (202)
T COG0378 189 LDEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHHHhh
Confidence 99999998753
No 325
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=8.2e-09 Score=108.93 Aligned_cols=114 Identities=33% Similarity=0.456 Sum_probs=92.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccccc----------------ccccCceeEeeeeEEEeec---------------CC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV----------------AKEAGGITQHMGAFVVGMS---------------TG 236 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~----------------~~~~~g~T~d~~~~~~~~~---------------~g 236 (581)
+-.++.++.|+++|||||.+.|....-+ .....|+|.......+... ++
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 4567899999999999999999653211 1224577766554443221 46
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCC
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDK 301 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl 301 (581)
+.++++|.|||-+|++....+++..|++++|+|.-+|+--|+...+.++....+.-++++||+|.
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDR 162 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhH
Confidence 78999999999999999999999999999999999999999999999888777777889999997
No 326
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.80 E-value=8.8e-10 Score=102.89 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=113.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.++.|+|.-++||||++.+.....+...+...+..|+....+.+++. .++.|||.+|++.|..+..-+++.+.+..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 57899999999999999999998887777777777776666666322 4678999999999999999999999999999
Q ss_pred EeccCCCChhHHHHHHH-H-------hhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 268 VAADDGVMPQTLEAIAH-A-------NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 268 vDa~~g~~~~~~~~i~~-~-------~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
||.+.....+....|.. + ....+|+++..||||.......+.-..+.. +.+..+....+++|+|.+.|
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~----f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDN----FKKENGFEGWTETSAKENKN 181 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHH----HHhccCccceeeeccccccC
Confidence 99998554333222221 1 122356899999999954322111111111 11122344689999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
++|..+.|.+..
T Consensus 182 i~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 182 IPEAQRELVEKI 193 (229)
T ss_pred hhHHHHHHHHHH
Confidence 999988887754
No 327
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.73 E-value=8.2e-08 Score=93.91 Aligned_cols=83 Identities=25% Similarity=0.268 Sum_probs=68.5
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh-------HHHhhccccc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS-------AMRKRGAAVT 261 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~-------~~~~~~~~~a 261 (581)
..+|+++|-|.+|||||+..+............||.......+.+ +|..+.++|.||.-.-. ......++.|
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 368999999999999999999988776666777888888888888 89999999999953322 2233457889
Q ss_pred cEEEEEEeccC
Q 008003 262 DIVVLVVAADD 272 (581)
Q Consensus 262 DivllVvDa~~ 272 (581)
|++++|+|++.
T Consensus 141 DlilMvLDatk 151 (364)
T KOG1486|consen 141 DLILMVLDATK 151 (364)
T ss_pred cEEEEEecCCc
Confidence 99999999986
No 328
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.71 E-value=2.5e-08 Score=101.88 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=39.4
Q ss_pred CCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 289 NVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 289 ~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
..+-++|+||+|+......++...+.. +....+..+++++||++|+|+++|++||..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~----lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIAC----AREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHH----HHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 356799999999975322222221111 1223345789999999999999999999764
No 329
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.67 E-value=4.3e-08 Score=94.86 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=99.4
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHH-----hhcccccc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR-----KRGAAVTD 262 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~-----~~~~~~aD 262 (581)
..+|.++|.+|+||||+=..+..+.. .....+|-|.|+...++.+-++..+.+||..|++.|.... ...++..+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 46899999999999998777765443 3345678899998888877566889999999998776543 35678899
Q ss_pred EEEEEEeccCCCChhHHHHHHH----Hh--hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 263 IVVLVVAADDGVMPQTLEAIAH----AN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 263 ivllVvDa~~g~~~~~~~~i~~----~~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
++++|+|++......+....+. +. .....+.+.+.|+||...+..+..-.........-.......++++|-..
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwD 163 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIWD 163 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchhh
Confidence 9999999987655555544433 22 12345899999999976544332222111111110111235677777665
Q ss_pred C
Q 008003 337 K 337 (581)
Q Consensus 337 g 337 (581)
.
T Consensus 164 e 164 (295)
T KOG3886|consen 164 E 164 (295)
T ss_pred H
Confidence 3
No 330
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.66 E-value=1.8e-07 Score=103.70 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=74.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccc-cccc-cCceeEeeeeEEEeecCCeEEEEEeCCCcchhh------HH----
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKE-AGGITQHMGAFVVGMSTGASITFLDTPGHAAFS------AM---- 253 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~-~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~------~~---- 253 (581)
+.-..+|+++|.+|+|||||+|.|++... .... .++||+ ........ +|..+.++||||..+.. ..
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~i-dG~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLV-QGVKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEE-CCceEEEEECCCCCccccchHHHHHHHHH
Confidence 44567899999999999999999999764 3333 355555 33333344 78999999999965431 11
Q ss_pred Hhhccc--cccEEEEEEeccCC-CChhHHHHHHHH---hhcC--CCEEEEEeCCCCCC
Q 008003 254 RKRGAA--VTDIVVLVVAADDG-VMPQTLEAIAHA---NAAN--VPIVVAINKCDKPA 303 (581)
Q Consensus 254 ~~~~~~--~aDivllVvDa~~g-~~~~~~~~i~~~---~~~~--~piIvViNK~Dl~~ 303 (581)
...++. .+|++|+|...+.. ...++...++.+ ...+ ..+|||.|..|...
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 112333 47999999876532 222333333333 2222 34899999999864
No 331
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.6e-07 Score=98.89 Aligned_cols=143 Identities=22% Similarity=0.298 Sum_probs=97.3
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcccc--ccccc-CceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhcccc
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSL--VAKEA-GGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAV 260 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~--~~~~~-~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~ 260 (581)
+-.+.+..|+++|+||+|||||+..|...-. ...++ +.+|. .......++|+.+|. +...+ ...+..
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv-------vsgK~RRiTflEcp~--Dl~~m-iDvaKI 133 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV-------VSGKTRRITFLECPS--DLHQM-IDVAKI 133 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE-------eecceeEEEEEeChH--HHHHH-HhHHHh
Confidence 3456778899999999999999999976422 22222 22332 222557899999993 44433 345678
Q ss_pred ccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhhHHhhhhhc-cchhhhcCCcceEEEEeccCC
Q 008003 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQLGAE-GLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 261 aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~~~~~l~~~-~~~~~~~~~~~~ii~iSAktg 337 (581)
||+++|++|++-|..-++.+.+..+...+.| ++-|++..|+... +..++..-..+ ...+.+......+|.+|...+
T Consensus 134 aDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~-~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 134 ADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN-PSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred hheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC-hHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 9999999999999999999999999999999 7889999999643 22221111110 111223334567888887643
No 332
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.61 E-value=1.4e-07 Score=88.00 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=65.4
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEE
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVV 330 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii 330 (581)
..+..+..+.+|++++|+|++++...++.+....+...++|+++|+||+|+.+. .... ..... ... ...+++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~--~~~~-~~~~~---~~~--~~~~~~ 74 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK--EVLE-KWKSI---KES--EGIPVV 74 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH--HHHH-HHHHH---HHh--CCCcEE
Confidence 345566777899999999998866656555555555568999999999999532 1111 11110 111 124789
Q ss_pred EEeccCCCChhhHHHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~~~ 351 (581)
++||++|.|+++|++.|....
T Consensus 75 ~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 75 YVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred EEEccccccHHHHHHHHHHHH
Confidence 999999999999999997654
No 333
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.60 E-value=5.5e-08 Score=92.71 Aligned_cols=57 Identities=26% Similarity=0.473 Sum_probs=47.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
....+++++|.||+|||||+|+|.+... .++..||+|++.....+ +..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~----~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL----DKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe----CCCEEEEECcCC
Confidence 4568999999999999999999998654 67888999998765544 236899999994
No 334
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=3.6e-07 Score=93.85 Aligned_cols=122 Identities=22% Similarity=0.325 Sum_probs=86.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccc---cccCceeEeeeeEEEeecC----C------------------------
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA---KEAGGITQHMGAFVVGMST----G------------------------ 236 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~---~~~~g~T~d~~~~~~~~~~----g------------------------ 236 (581)
..|-|.++|.-..||||+++.|+.+.+.. +..| +|..+......-.. |
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEP-Ttd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEP-TTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCC-CcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 45789999999999999999999877643 2233 22222222211000 0
Q ss_pred -----------eEEEEEeCCCcc-----------hhhHHHhhccccccEEEEEEeccC-CCChhHHHHHHHHhhcCCCEE
Q 008003 237 -----------ASITFLDTPGHA-----------AFSAMRKRGAAVTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIV 293 (581)
Q Consensus 237 -----------~~i~liDTpG~~-----------~~~~~~~~~~~~aDivllVvDa~~-g~~~~~~~~i~~~~~~~~piI 293 (581)
..++++||||.- +|.....-++..+|.+++++|+.. .+.++..+.+..++...-.+-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiR 215 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIR 215 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeE
Confidence 158999999942 344555567789999999999986 577888889999888777899
Q ss_pred EEEeCCCCCCCChhhHHhh
Q 008003 294 VAINKCDKPAADPERVKNQ 312 (581)
Q Consensus 294 vViNK~Dl~~~~~~~~~~~ 312 (581)
||+||.|..+ .++....
T Consensus 216 VVLNKADqVd--tqqLmRV 232 (532)
T KOG1954|consen 216 VVLNKADQVD--TQQLMRV 232 (532)
T ss_pred EEeccccccC--HHHHHHH
Confidence 9999999973 3444443
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.59 E-value=6.1e-08 Score=90.77 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=44.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
.+.+|+++|.||+|||||+|+|.+... ..+..+|+|++..... . +..+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~--~--~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT--L--MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE--c--CCCEEEEECcCC
Confidence 356899999999999999999998654 6778899998865433 2 234899999994
No 336
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.46 E-value=5.2e-07 Score=88.78 Aligned_cols=82 Identities=23% Similarity=0.182 Sum_probs=64.9
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh-------hHHHhhccccccE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-------SAMRKRGAAVTDI 263 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~-------~~~~~~~~~~aDi 263 (581)
+|.++|-|.+|||||+..|.+....+...-++|-........+ +|.++.+.|.||.-+- .......++.|++
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y-~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY-KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec-cccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 8999999999999999999998776666667777666666666 8899999999995322 1233345688999
Q ss_pred EEEEEeccCC
Q 008003 264 VVLVVAADDG 273 (581)
Q Consensus 264 vllVvDa~~g 273 (581)
+++|+|+..+
T Consensus 140 i~~vld~~kp 149 (358)
T KOG1487|consen 140 IFIVLDVLKP 149 (358)
T ss_pred EEEEeeccCc
Confidence 9999998764
No 337
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.45 E-value=1.8e-07 Score=90.42 Aligned_cols=56 Identities=29% Similarity=0.429 Sum_probs=45.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc---------ccccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS---------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~---------~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
.+..++++|.+|+|||||+|+|.+.. ..++..+|+|++.....+. . .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--~--~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG--N--GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC--C--CCEEEeCcCC
Confidence 45689999999999999999998743 3556778999998666553 2 5799999994
No 338
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.43 E-value=7.4e-07 Score=91.53 Aligned_cols=112 Identities=18% Similarity=0.360 Sum_probs=69.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccc----------cCceeEeeeeEEEeecCC--eEEEEEeCCCcch--------
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKE----------AGGITQHMGAFVVGMSTG--ASITFLDTPGHAA-------- 249 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~----------~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~-------- 249 (581)
++|.++|.+|+|||||+|.|.+....... ..+++.......+.- ++ ..++++||||..+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEE-NGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEE-TCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEecc-CCcceEEEEEeCCCccccccchhhh
Confidence 57999999999999999999886543321 112222222222222 33 5788999999432
Q ss_pred ----------hhHHHh--hc-------cccccEEEEEEeccC-CCChhHHHHHHHHhhcCCCEEEEEeCCCCCC
Q 008003 250 ----------FSAMRK--RG-------AAVTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 250 ----------~~~~~~--~~-------~~~aDivllVvDa~~-g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~ 303 (581)
|..... .. =...|++|++++.+. ++.+.+++.++.+.. .+++|-|+.|+|...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccC
Confidence 111110 00 134689999999864 788888888888764 488999999999974
No 339
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.43 E-value=1.1e-06 Score=84.98 Aligned_cols=103 Identities=19% Similarity=0.105 Sum_probs=65.1
Q ss_pred CcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChh-hHHhhhhhccchhhhcC
Q 008003 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE-RVKNQLGAEGLELEDWG 324 (581)
Q Consensus 246 G~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~ 324 (581)
.+..|..++..++..+|++++|+|+++..... ...+. ....++|+++|+||+|+...... .....+.. .......+
T Consensus 20 ~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~-~~~l~-~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~ 96 (190)
T cd01855 20 DEDFILNLLSSISPKKALVVHVVDIFDFPGSL-IPRLR-LFGGNNPVILVGNKIDLLPKDKNLVRIKNWLR-AKAAAGLG 96 (190)
T ss_pred hHHHHHHHHHhcccCCcEEEEEEECccCCCcc-chhHH-HhcCCCcEEEEEEchhcCCCCCCHHHHHHHHH-HHHHhhcC
Confidence 33446788888999999999999998744222 22221 22356899999999999643211 11111110 00001111
Q ss_pred -CcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 325 -GKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 325 -~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
...+++++||++|.|+++|++.|....
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 112589999999999999999997754
No 340
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.39 E-value=3.9e-07 Score=83.77 Aligned_cols=53 Identities=30% Similarity=0.472 Sum_probs=42.9
Q ss_pred EEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
+++++|.+|+|||||+|+|.+... ..+..+|+|++.....+ ++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL---TP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe---CC-CEEEEECCCc
Confidence 899999999999999999998765 56667888888654433 22 6899999995
No 341
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.38 E-value=4.3e-07 Score=84.88 Aligned_cols=57 Identities=30% Similarity=0.413 Sum_probs=46.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
.+..+++++|.||+|||||+|+|.+.. ...+..+++|++.....+ +..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL----DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe----cCCEEEEECCCC
Confidence 467899999999999999999999875 456677899998766543 246999999993
No 342
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.36 E-value=5.7e-07 Score=92.82 Aligned_cols=58 Identities=26% Similarity=0.459 Sum_probs=47.6
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
..++.+++++|.||+|||||+|+|.+.+. .++..+|+|++.....+ +..+.++||||.
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtPGi 176 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL----GKGLELLDTPGI 176 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe----CCcEEEEECCCc
Confidence 34578999999999999999999998765 67788999999754332 346899999995
No 343
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.36 E-value=2.9e-06 Score=80.58 Aligned_cols=98 Identities=22% Similarity=0.190 Sum_probs=65.4
Q ss_pred CCCcc-hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhh
Q 008003 244 TPGHA-AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELED 322 (581)
Q Consensus 244 TpG~~-~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~ 322 (581)
-|||- .........+..||++++|+|++++........+..+ .++|+++|+||+|+.+. ......+.. +..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~--~~~~~~~~~----~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP--KKTKKWLKY----FES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh--HHHHHHHHH----HHh
Confidence 36653 3445556788999999999999876554444444433 35799999999999632 111111110 011
Q ss_pred cCCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 323 WGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 323 ~~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
...+++++||+++.|+++|.+.|....
T Consensus 74 --~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 --KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred --cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 123689999999999999999987653
No 344
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.2e-06 Score=93.18 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=80.2
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeee------------------------------------
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGA------------------------------------ 228 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~------------------------------------ 228 (581)
..++..+|+|.|+.++||||++|+++.+++..+..+.+|--+..
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 34567899999999999999999998776654444333221110
Q ss_pred -------EEEeecCC------eEEEEEeCCCcc---hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-
Q 008003 229 -------FVVGMSTG------ASITFLDTPGHA---AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP- 291 (581)
Q Consensus 229 -------~~~~~~~g------~~i~liDTpG~~---~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p- 291 (581)
..+.++++ ..+.++|.||.. .+..........+|++|||+.+.+..+....+.+...... +|
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-Kpn 263 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPN 263 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCc
Confidence 11112111 257899999953 3445555677899999999999876655555555555444 55
Q ss_pred EEEEEeCCCCCCC
Q 008003 292 IVVAINKCDKPAA 304 (581)
Q Consensus 292 iIvViNK~Dl~~~ 304 (581)
++++.||+|....
T Consensus 264 iFIlnnkwDasas 276 (749)
T KOG0448|consen 264 IFILNNKWDASAS 276 (749)
T ss_pred EEEEechhhhhcc
Confidence 8888899998643
No 345
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.31 E-value=1.6e-06 Score=87.46 Aligned_cols=94 Identities=21% Similarity=0.186 Sum_probs=64.4
Q ss_pred chhhHHHhhccccccEEEEEEeccCCC-ChhHHH-HHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCC
Q 008003 248 AAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLE-AIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGG 325 (581)
Q Consensus 248 ~~~~~~~~~~~~~aDivllVvDa~~g~-~~~~~~-~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~ 325 (581)
+++..+...+++++|.+++|+|+.++. .....+ .+..+...++|+++|+||+||.+.. ....... ..+..+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~--~~~~~~~---~~~~~~-- 96 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE--DMEKEQL---DIYRNI-- 96 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH--HHHHHHH---HHHHHC--
Confidence 566666777899999999999998744 333333 2334445789999999999996422 1111111 111222
Q ss_pred cceEEEEeccCCCChhhHHHHHH
Q 008003 326 KVQVVEVSAVKKTGLDDLEVALL 348 (581)
Q Consensus 326 ~~~ii~iSAktg~gI~eLl~~L~ 348 (581)
..+++++||++|.|+++|++.|.
T Consensus 97 g~~v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 97 GYQVLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred CCeEEEEecCCchhHHHHHhhhc
Confidence 35899999999999999998875
No 346
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.31 E-value=1e-06 Score=83.73 Aligned_cols=58 Identities=31% Similarity=0.492 Sum_probs=47.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
...+++++++|.+|+|||||+|+|.+... .....+++|.+.....+. ..+.++||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~----~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS----PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec----CCEEEEECCCC
Confidence 34567999999999999999999998765 556678899887665542 46899999994
No 347
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.29 E-value=8.4e-07 Score=91.07 Aligned_cols=57 Identities=25% Similarity=0.402 Sum_probs=46.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
.+..+++++|.||+|||||+|+|.+.. ..++..+|+|+......+ +..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL----SDGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe----CCCEEEEECCCc
Confidence 456899999999999999999999876 456788999998754433 236899999996
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.29 E-value=3.1e-06 Score=79.17 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=60.5
Q ss_pred hccccccEEEEEEeccCCCChhHHHHHHHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEe
Q 008003 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iS 333 (581)
..+..+|++++|+|+.++...........+.. .++|+|+|+||+|+.+. +.....+..+. ... ...++++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~--~~~~~~~~~~~----~~~-~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT--WVTARWVKILS----KEY-PTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH--HHHHHHHHHHh----cCC-cEEEEEee
Confidence 45778999999999998655545444444443 34899999999999632 22222222211 111 12368999
Q ss_pred ccCCCChhhHHHHHHHHHH
Q 008003 334 AVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 334 Aktg~gI~eLl~~L~~~~~ 352 (581)
|+++.|+++|++.|.....
T Consensus 77 a~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 77 INNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred ccccccHHHHHHHHHHHHh
Confidence 9999999999999976543
No 349
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.28 E-value=1.3e-06 Score=92.13 Aligned_cols=83 Identities=22% Similarity=0.136 Sum_probs=65.9
Q ss_pred CEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCC----------------eEEEEEeCCCcch---
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTG----------------ASITFLDTPGHAA--- 249 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g----------------~~i~liDTpG~~~--- 249 (581)
.+++|+|.||+|||||+|+|++... .....|.+|.+.....+..++. ..+.++|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999999887 6677788888887777766432 3689999999532
Q ss_pred ----hhHHHhhccccccEEEEEEeccC
Q 008003 250 ----FSAMRKRGAAVTDIVVLVVAADD 272 (581)
Q Consensus 250 ----~~~~~~~~~~~aDivllVvDa~~ 272 (581)
........++.+|++++|+|+.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 23344456789999999999864
No 350
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.28 E-value=8.3e-07 Score=92.99 Aligned_cols=60 Identities=28% Similarity=0.385 Sum_probs=49.8
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
-..++..++.++|-||+|||||+|+|.+... .++..||+|.+.....+.. .+.++||||.
T Consensus 127 ~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~----~i~LlDtPGi 187 (322)
T COG1161 127 GLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD----GIYLLDTPGI 187 (322)
T ss_pred CCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC----CeEEecCCCc
Confidence 3455668899999999999999999998765 6788899999887666542 4999999994
No 351
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.23 E-value=6.8e-07 Score=95.15 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=45.3
Q ss_pred CCEEEEEccCCCCcchHhhhhhccc------ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTS------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~------~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~ 249 (581)
+.++.++|.+|+|||||+|+|.+.. ..++..||+|++.....+ +..+.++||||...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~----~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL----DDGHSLYDTPGIIN 216 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe----CCCCEEEECCCCCC
Confidence 4799999999999999999998742 356778999999775544 22367999999643
No 352
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.23 E-value=2.1e-06 Score=87.80 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=68.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC----------------eEEEEEeCCCcc---
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG----------------ASITFLDTPGHA--- 248 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g----------------~~i~liDTpG~~--- 248 (581)
..++++|+|.||+|||||+|+|.+........|.+|.|.....+..++. ..++++|+||.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 4469999999999999999999999888888999999998888776421 368999999942
Q ss_pred ----hhhHHHhhccccccEEEEEEeccC
Q 008003 249 ----AFSAMRKRGAAVTDIVVLVVAADD 272 (581)
Q Consensus 249 ----~~~~~~~~~~~~aDivllVvDa~~ 272 (581)
....-...-++.+|.++-|+++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 233344456788999999998865
No 353
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.22 E-value=9e-07 Score=78.32 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=68.6
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEe
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvD 269 (581)
.+|+++|..|+|||+|+.++....+... +.+ .+.. +........+.++.+++|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~--~~~-~t~~----------------------~~~~~~~~~~s~~~~~~v~~ 55 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYV--PTV-FTIG----------------------IDVYDPTSYESFDVVLQCWR 55 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCcccc--Cce-ehhh----------------------hhhccccccCCCCEEEEEEE
Confidence 3799999999999999999966555321 110 0111 22233445677899998898
Q ss_pred ccCCCChh--HHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 270 ADDGVMPQ--TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 270 a~~g~~~~--~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
.+...... |...+......+.|.++++||.|+.... .... +. ..+++++|+++|.|+.
T Consensus 56 ~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~--~~~~---~~---------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 56 VDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEER--QVAT---EE---------GLEFAETSAKTPEEGE 115 (124)
T ss_pred ccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhC--cCCH---HH---------HHHHHHHhCCCcchhh
Confidence 87632221 3333333334557889999999983211 1110 00 1145678999999984
No 354
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.21 E-value=4.7e-06 Score=85.59 Aligned_cols=97 Identities=21% Similarity=0.220 Sum_probs=65.8
Q ss_pred CCcc-hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhc
Q 008003 245 PGHA-AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDW 323 (581)
Q Consensus 245 pG~~-~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~ 323 (581)
|||- .........+..+|++++|+|+..+...........+ .+.|+|+|+||+|+.+. ......... +...
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~--~~~~~~~~~----~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP--AVTKQWLKY----FEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH--HHHHHHHHH----HHHc
Confidence 7763 3445556788999999999999876555444444443 36899999999999532 111111111 1111
Q ss_pred CCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 324 GGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 324 ~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
..+++++||+++.|+++|++.|....
T Consensus 77 --~~~vi~iSa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 77 --GIKALAINAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred --CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 13689999999999999999987654
No 355
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.19 E-value=1.4e-05 Score=83.01 Aligned_cols=114 Identities=23% Similarity=0.356 Sum_probs=76.2
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccc----------cCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhH----
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKE----------AGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSA---- 252 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~----------~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~---- 252 (581)
.++|.++|+.|.|||||+|.|+++....+. .+++........+.- +| ..++++||||.-++..
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEE-DGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeec-CCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999887443221 122223333333332 44 4678999999433211
Q ss_pred ----------HHh----------hc--c--ccccEEEEEEecc-CCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCC
Q 008003 253 ----------MRK----------RG--A--AVTDIVVLVVAAD-DGVMPQTLEAIAHANAANVPIVVAINKCDKPAA 304 (581)
Q Consensus 253 ----------~~~----------~~--~--~~aDivllVvDa~-~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~ 304 (581)
+.. +. + ...+++|+.+-.+ .++.+.+.+.++.+.. .+.+|-|+-|+|....
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCCH
Confidence 000 11 1 2458899999765 4788999998887753 5789999999999754
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.17 E-value=7.3e-06 Score=76.52 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=55.7
Q ss_pred cEEEEEEeccCCCChhHHHHH-HHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 262 DIVVLVVAADDGVMPQTLEAI-AHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 262 DivllVvDa~~g~~~~~~~~i-~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|++++|+|+.++......... ..+...++|+|+|+||+|+... +.....+... ... ...+++++||++|.|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~--~~~~~~~~~~----~~~-~~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK--EVLRKWLAYL----RHS-YPTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH--HHHHHHHHHH----Hhh-CCceEEEEeccCCcCh
Confidence 789999999876544433333 3455668999999999999532 2222211111 111 1246899999999999
Q ss_pred hhHHHHHHHH
Q 008003 341 DDLEVALLLQ 350 (581)
Q Consensus 341 ~eLl~~L~~~ 350 (581)
++|++.|...
T Consensus 74 ~~L~~~i~~~ 83 (155)
T cd01849 74 EKKESAFTKQ 83 (155)
T ss_pred hhHHHHHHHH
Confidence 9999998764
No 357
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.13 E-value=4e-06 Score=83.39 Aligned_cols=84 Identities=21% Similarity=0.233 Sum_probs=59.4
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc--ccccc-ccCceeEeeeeEEEeec--CCeEEEEEeCCCcchhh------HHHhhc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT--SLVAK-EAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFS------AMRKRG 257 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~--~~~~~-~~~g~T~d~~~~~~~~~--~g~~i~liDTpG~~~~~------~~~~~~ 257 (581)
-..|+|+|++++|||||+|.|.+. .+... ....+|+.+..+..... .+..+.++||||..+.. .....+
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 357999999999999999999988 66543 34567777766665542 35789999999954322 122233
Q ss_pred cc--cccEEEEEEeccC
Q 008003 258 AA--VTDIVVLVVAADD 272 (581)
Q Consensus 258 ~~--~aDivllVvDa~~ 272 (581)
+. -+|++|+.++...
T Consensus 87 l~~llss~~i~n~~~~~ 103 (224)
T cd01851 87 LATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHhCEEEEeccCcc
Confidence 33 3899998887754
No 358
>PRK13796 GTPase YqeH; Provisional
Probab=98.13 E-value=2.7e-06 Score=90.78 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=44.2
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc------cccccccCceeEeeeeEEEeecCCeEEEEEeCCCcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT------SLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~------~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~ 248 (581)
+.++.++|.+|||||||+|+|.+. ....+..||||++.....+. ++ ..++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~--~~--~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD--DG--SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC--CC--cEEEECCCcc
Confidence 458999999999999999999753 23467889999998665543 33 4899999963
No 359
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.11 E-value=6.2e-06 Score=77.37 Aligned_cols=59 Identities=25% Similarity=0.377 Sum_probs=35.4
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccc-ccc-------ccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSL-VAK-------EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~-~~~-------~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~ 251 (581)
+..++++|++|||||||+|+|..... ... .-..||+....+.+ ++ ...++||||.++|.
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l--~~--g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL--PD--GGYIIDTPGFRSFG 101 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE--TT--SEEEECSHHHHT--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec--CC--CcEEEECCCCCccc
Confidence 36899999999999999999988632 111 11234444433333 23 35899999976654
No 360
>PRK12289 GTPase RsgA; Reviewed
Probab=98.11 E-value=2.6e-06 Score=90.14 Aligned_cols=58 Identities=29% Similarity=0.451 Sum_probs=42.5
Q ss_pred CEEEEEccCCCCcchHhhhhhccc-ccccccCc-------eeEeeeeEEEeecCCeEEEEEeCCCcchhh
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGG-------ITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g-------~T~d~~~~~~~~~~g~~i~liDTpG~~~~~ 251 (581)
..++|+|++|||||||+|+|.+.. ...+..++ ||++...+.+. +|. .|+||||...+.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~--~g~--~liDTPG~~~~~ 238 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP--NGG--LLADTPGFNQPD 238 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC--CCc--EEEeCCCccccc
Confidence 358999999999999999998754 44455555 78877544442 332 799999976544
No 361
>PRK12288 GTPase RsgA; Reviewed
Probab=98.09 E-value=3.3e-06 Score=89.30 Aligned_cols=58 Identities=22% Similarity=0.413 Sum_probs=40.5
Q ss_pred CEEEEEccCCCCcchHhhhhhccc-ccccccC-------ceeEeeeeEEEeecCCeEEEEEeCCCcchhh
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTS-LVAKEAG-------GITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~-------g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~ 251 (581)
..++|+|.+|||||||+|+|.+.. ...++.+ .||+....+.+. .| ..++||||.+.|.
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~ 271 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFG 271 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCccc
Confidence 358999999999999999999764 3333333 256655544443 23 2599999987765
No 362
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.09 E-value=2.5e-05 Score=81.65 Aligned_cols=145 Identities=21% Similarity=0.223 Sum_probs=79.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc------ccc--ccccC-----------ceeEeeeeEEEe---------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT------SLV--AKEAG-----------GITQHMGAFVVG--------------- 232 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~------~~~--~~~~~-----------g~T~d~~~~~~~--------------- 232 (581)
.++..++++|++|+||||++..|... ++. ..+.. ..-..+......
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999888431 111 00000 000001000000
Q ss_pred -ecCCeEEEEEeCCCcchhhHH----Hh---hc-----cccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCC
Q 008003 233 -MSTGASITFLDTPGHAAFSAM----RK---RG-----AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKC 299 (581)
Q Consensus 233 -~~~g~~i~liDTpG~~~~~~~----~~---~~-----~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~ 299 (581)
...++.+.|+||||....... .. +. -...+..++|+|++.+.. ...........--+.-+++||.
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~~~~giIlTKl 269 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAVGLTGIILTKL 269 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhCCCCEEEEECC
Confidence 115678999999995432211 11 11 134678999999996532 2222222221112457899999
Q ss_pred CCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHH
Q 008003 300 DKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (581)
Q Consensus 300 Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~ 345 (581)
|... ............ ..|+.+++ +|+++++|..
T Consensus 270 D~t~-~~G~~l~~~~~~---------~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 270 DGTA-KGGVVFAIADEL---------GIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCC-CccHHHHHHHHH---------CCCEEEEe--CCCChhhCcc
Confidence 9642 222333333222 34788888 8999987643
No 363
>PRK12289 GTPase RsgA; Reviewed
Probab=98.08 E-value=8.5e-06 Score=86.21 Aligned_cols=86 Identities=22% Similarity=0.265 Sum_probs=58.7
Q ss_pred hccccccEEEEEEeccCCCChhH--HHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEe
Q 008003 256 RGAAVTDIVVLVVAADDGVMPQT--LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~~~--~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iS 333 (581)
..+.++|.+++|+|+.++....+ ...+..+...++|+++|+||+||.+. ........ .+..+ .++++++|
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~--~~~~~~~~----~~~~~--g~~v~~iS 156 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP--TEQQQWQD----RLQQW--GYQPLFIS 156 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh--HHHHHHHH----HHHhc--CCeEEEEE
Confidence 45789999999999986542221 33444445578999999999999632 22111111 11222 24789999
Q ss_pred ccCCCChhhHHHHHHH
Q 008003 334 AVKKTGLDDLEVALLL 349 (581)
Q Consensus 334 Aktg~gI~eLl~~L~~ 349 (581)
|++|.|+++|++.|..
T Consensus 157 A~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 157 VETGIGLEALLEQLRN 172 (352)
T ss_pred cCCCCCHHHHhhhhcc
Confidence 9999999999998864
No 364
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.06 E-value=1.2e-05 Score=83.09 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=66.3
Q ss_pred CCCcc-hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhh
Q 008003 244 TPGHA-AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELED 322 (581)
Q Consensus 244 TpG~~-~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~ 322 (581)
-|||- .........+..+|++|+|+|+..+...........+. +.|+++|+||+|+.+. ......+.. +..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~--~~~~~~~~~----~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP--EVTKKWIEY----FEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH--HHHHHHHHH----HHH
Confidence 47863 23345567889999999999998766554444333332 7899999999999532 111111110 011
Q ss_pred cCCcceEEEEeccCCCChhhHHHHHHHHHH
Q 008003 323 WGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 323 ~~~~~~ii~iSAktg~gI~eLl~~L~~~~~ 352 (581)
. ..+++++||+++.|+++|++.|.....
T Consensus 79 ~--~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 Q--GIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred c--CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 1 246899999999999999999876543
No 365
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.05 E-value=3.3e-05 Score=65.67 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=67.9
Q ss_pred CCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEEeccCCCC----
Q 008003 361 DGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP---- 434 (581)
Q Consensus 361 ~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~---- 434 (581)
+.|+..+|.++|...+.|++++|+|.+|+++.||.+.+.+ ...+|++|.. +++.+++|.+|+.+.| .|.+..
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~-~~~~~~~a~aG~~v~i-~l~~i~~~~v 79 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEM-HHEPLEEALPGDNVGF-NVKNVSKKDI 79 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEE-CCcCcCEECCCCEEEE-EECCCCHHHc
Confidence 4578889999999999999999999999999999999976 4678999974 6788999999999987 455532
Q ss_pred CCCCeEEEeC
Q 008003 435 MAGDDIIVVD 444 (581)
Q Consensus 435 ~~Gd~~~~v~ 444 (581)
..|+.++..+
T Consensus 80 ~~G~vl~~~~ 89 (91)
T cd03693 80 KRGDVAGDSK 89 (91)
T ss_pred CCcCEEccCC
Confidence 4788877643
No 366
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.03 E-value=2.8e-05 Score=79.56 Aligned_cols=97 Identities=22% Similarity=0.182 Sum_probs=56.0
Q ss_pred CCeEEEEEeCCCcchhhHHHh-------hc-----cccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 235 TGASITFLDTPGHAAFSAMRK-------RG-----AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~-------~~-----~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
.++.+.|+||||......... +. ...+|.+++|+|++.+ .++..........--+.-+++||+|..
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~~g~IlTKlDe~ 230 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGLTGIILTKLDGT 230 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCCCEEEEEccCCC
Confidence 568899999999654332211 11 1248999999999754 333333322221112467889999984
Q ss_pred CCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHH
Q 008003 303 AADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (581)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~ 345 (581)
.. ........... ..|+.+++ +|+++++|..
T Consensus 231 ~~-~G~~l~~~~~~---------~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 231 AK-GGIILSIAYEL---------KLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CC-ccHHHHHHHHH---------CcCEEEEe--CCCChHhCcc
Confidence 32 22222222221 24777777 8898877643
No 367
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.99 E-value=7.8e-05 Score=72.98 Aligned_cols=112 Identities=20% Similarity=0.308 Sum_probs=71.2
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccc--------cccCceeE-eeeeEEEeecCC--eEEEEEeCCCcchhh-------
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVA--------KEAGGITQ-HMGAFVVGMSTG--ASITFLDTPGHAAFS------- 251 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~--------~~~~g~T~-d~~~~~~~~~~g--~~i~liDTpG~~~~~------- 251 (581)
++|.++|.+|.|||||+|.|....+.. ...+-||. ......+. .+| .+++++||||.-++.
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvie-E~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIE-EKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeee-ecceEEEEEEecCCCcccccCccchhH
Confidence 689999999999999999997654322 12222222 22222222 244 468899999943221
Q ss_pred -------------------HHHhhccc--cccEEEEEEeccC-CCChhHHHHHHHHhhcCCCEEEEEeCCCCCC
Q 008003 252 -------------------AMRKRGAA--VTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 252 -------------------~~~~~~~~--~aDivllVvDa~~-g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~ 303 (581)
..+.+.+. ..+++++.+..+- ...+-+.+.++.+.. -+.++-|+-|.|...
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeeccccc
Confidence 11222232 3578888887764 456777888877754 356888999999864
No 368
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.98 E-value=6.6e-06 Score=82.99 Aligned_cols=57 Identities=28% Similarity=0.445 Sum_probs=40.2
Q ss_pred CEEEEEccCCCCcchHhhhhhcccc-ccccc-------CceeEeeeeEEEeecCCeEEEEEeCCCcchhh
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSL-VAKEA-------GGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~-------~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~ 251 (581)
..++++|++|+|||||+|+|.+... ..++. ..||++...+.+ .++ .++||||...+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~~---~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HGG---LIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CCc---EEEeCCCccccC
Confidence 5899999999999999999987532 22222 237776655555 233 799999975543
No 369
>PRK14974 cell division protein FtsY; Provisional
Probab=97.97 E-value=1.2e-05 Score=84.60 Aligned_cols=97 Identities=23% Similarity=0.188 Sum_probs=55.4
Q ss_pred CCeEEEEEeCCCcchhhHH----Hhh--ccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhh
Q 008003 235 TGASITFLDTPGHAAFSAM----RKR--GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPER 308 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~----~~~--~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~ 308 (581)
.++.+.|+||||.-..... ... .....|.++||+|+..+. ...+........--.--+++||.|.... ...
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giIlTKlD~~~~-~G~ 297 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVILTKVDADAK-GGA 297 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEEEeeecCCCC-ccH
Confidence 3567999999995432211 111 123578999999997653 2233333322211235678999998532 222
Q ss_pred HHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHH
Q 008003 309 VKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (581)
Q Consensus 309 ~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~ 345 (581)
........ ..|+.+++ +|+++++|..
T Consensus 298 ~ls~~~~~---------~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 298 ALSIAYVI---------GKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred HHHHHHHH---------CcCEEEEe--CCCChhhccc
Confidence 22222211 24788887 8999988653
No 370
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.97 E-value=4.7e-05 Score=64.16 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=56.8
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc------cceEEEEEcccCCcccccCCCCcEEEeccCC
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE------WGRIRAIRDMVGKSTDKARPAMPVEIEGLKG 432 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~------~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~ 432 (581)
..+|.++|..++.|++++|++.+|++++||.+.+++. ..+|++|.. +++.+++|.||+.+.+ .+.+
T Consensus 2 ~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~-~~~~~~~a~aGd~v~l-~l~~ 73 (87)
T cd03694 2 EFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHR-NRSPVRVVRAGQSASL-ALKK 73 (87)
T ss_pred EEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEE-CCeECCEECCCCEEEE-EEcC
Confidence 4578888988999999999999999999999999775 448899974 7899999999999988 4444
No 371
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.97 E-value=1.1e-05 Score=75.17 Aligned_cols=56 Identities=29% Similarity=0.406 Sum_probs=42.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
...+++++|.+|+|||||+|+|.+... ..+..+|+|.+.... .. +..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLV--KI--TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEE--Ec--CCCEEEEECcCC
Confidence 457899999999999999999997653 345667777664322 22 347999999994
No 372
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.96 E-value=2.1e-05 Score=72.22 Aligned_cols=78 Identities=22% Similarity=0.167 Sum_probs=52.7
Q ss_pred HhhccccccEEEEEEeccCCCChhHHHHHHHHhhc--CCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEE
Q 008003 254 RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAA--NVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVE 331 (581)
Q Consensus 254 ~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~--~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~ 331 (581)
..+.+..+|++++|+|+.++...+.......+... ++|+++|+||+|+... ........ .+... ..++++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~--~~~~~~~~----~~~~~--~~~ii~ 76 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE--EQRKAWAE----YFKKE--GIVVVF 76 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH--HHHHHHHH----HHHhc--CCeEEE
Confidence 34567899999999999987766655555655544 7899999999999532 22111111 11111 147899
Q ss_pred EeccCCCC
Q 008003 332 VSAVKKTG 339 (581)
Q Consensus 332 iSAktg~g 339 (581)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99998875
No 373
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=97.95 E-value=4.7e-05 Score=63.83 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=64.7
Q ss_pred CCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc-ccc---eEEEEEcccCCcccccCCCCcEEEeccCCCCCCC
Q 008003 362 GPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH-EWG---RIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAG 437 (581)
Q Consensus 362 ~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~-~~~---kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~G 437 (581)
.|+.++|+....++..|.+++++|.+|+|+.|+.+.... ... ++..+.+.....+.++.+|+.+.+.|++++ ..|
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~-~~G 80 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNREEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGL-RVG 80 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCCCcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCC-cCc
Confidence 578899999999999999999999999999999997643 122 444555666678999999999999999886 688
Q ss_pred CeE
Q 008003 438 DDI 440 (581)
Q Consensus 438 d~~ 440 (581)
|++
T Consensus 81 dtl 83 (85)
T cd03690 81 DVL 83 (85)
T ss_pred ccc
Confidence 876
No 374
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=5.3e-05 Score=79.28 Aligned_cols=114 Identities=20% Similarity=0.298 Sum_probs=76.8
Q ss_pred CEEEEEccCCCCcchHhhhhhccccccc-------ccCceeEeeeeEEEeec-CC--eEEEEEeCCCcchhhH-------
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAK-------EAGGITQHMGAFVVGMS-TG--ASITFLDTPGHAAFSA------- 252 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~-------~~~g~T~d~~~~~~~~~-~g--~~i~liDTpG~~~~~~------- 252 (581)
+++.++|+.|.|||||+|.|+...+... ..+.-|..+......+. +| ..++++||||.-++..
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 6899999999999999999987644322 11111333434444332 44 4678899999432210
Q ss_pred -------HHh-----------hccc--cccEEEEEEeccC-CCChhHHHHHHHHhhcCCCEEEEEeCCCCCCC
Q 008003 253 -------MRK-----------RGAA--VTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIVVAINKCDKPAA 304 (581)
Q Consensus 253 -------~~~-----------~~~~--~aDivllVvDa~~-g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~ 304 (581)
... ..+. ..+++|+.+..+. |+.+.+.+.++.+. ..+++|-|+-|.|....
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~-~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS-KKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh-ccccccceeeccccCCH
Confidence 000 1222 5689999998764 68898988888765 46889999999999754
No 375
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.92 E-value=7.2e-05 Score=80.77 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc------cccc-c-ccc-C----------ceeEeeeeEEEee---------------
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ------TSLV-A-KEA-G----------GITQHMGAFVVGM--------------- 233 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~------~~~~-~-~~~-~----------g~T~d~~~~~~~~--------------- 233 (581)
++..|+++|.+|+||||++..|.. .++. + .+. + +.-.++..+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 356899999999999999998852 2211 1 100 0 0000111111100
Q ss_pred -cCCeEEEEEeCCCcchhhHH----Hh--hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 234 -STGASITFLDTPGHAAFSAM----RK--RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 234 -~~g~~i~liDTpG~~~~~~~----~~--~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
..++.+.|+||||....... .. ......|-++||+|++.|... ..........-.+--+++||.|-.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 03678999999995433221 11 123457899999999876332 233333332223567889999974
No 376
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=97.92 E-value=6.7e-05 Score=62.48 Aligned_cols=76 Identities=25% Similarity=0.204 Sum_probs=62.8
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcccc-----ceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCe
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW-----GRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDD 439 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~-----~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~ 439 (581)
.++|+.+..++..|.++.+++.+|+|++||.+.+.... +++..+.+....+++++.+|+.+.+.|++++ ..||+
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdt 80 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQT-RTGDT 80 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCc-ccCCE
Confidence 46788888899999999999999999999999864321 2445556667788999999999999999886 68998
Q ss_pred EE
Q 008003 440 II 441 (581)
Q Consensus 440 ~~ 441 (581)
++
T Consensus 81 l~ 82 (83)
T cd04092 81 LV 82 (83)
T ss_pred Ee
Confidence 76
No 377
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.90 E-value=3.2e-05 Score=79.86 Aligned_cols=84 Identities=31% Similarity=0.338 Sum_probs=57.2
Q ss_pred ccccccEEEEEEeccCCC-ChhHH-HHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEec
Q 008003 257 GAAVTDIVVLVVAADDGV-MPQTL-EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 257 ~~~~aDivllVvDa~~g~-~~~~~-~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSA 334 (581)
.+.++|++++|+|+.++. ..... ..+..+...++|+++|+||+||.+.. +. ..... ....+ ..+++++||
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~-~~-~~~~~----~~~~~--g~~v~~vSA 146 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE-EE-ELELV----EALAL--GYPVLAVSA 146 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH-HH-HHHHH----HHHhC--CCeEEEEEC
Confidence 378899999999998865 33332 23444556789999999999996431 11 11100 01111 358999999
Q ss_pred cCCCChhhHHHHHH
Q 008003 335 VKKTGLDDLEVALL 348 (581)
Q Consensus 335 ktg~gI~eLl~~L~ 348 (581)
++|.|+++|++.|.
T Consensus 147 ~~g~gi~~L~~~L~ 160 (287)
T cd01854 147 KTGEGLDELREYLK 160 (287)
T ss_pred CCCccHHHHHhhhc
Confidence 99999999988774
No 378
>PRK00098 GTPase RsgA; Reviewed
Probab=97.87 E-value=3.7e-05 Score=79.84 Aligned_cols=85 Identities=28% Similarity=0.281 Sum_probs=56.4
Q ss_pred ccccccEEEEEEeccCCCC-hhH-HHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEec
Q 008003 257 GAAVTDIVVLVVAADDGVM-PQT-LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 257 ~~~~aDivllVvDa~~g~~-~~~-~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSA 334 (581)
.+.++|++++|+|+.++.. ... ...+..+...++|+++|+||+|+... .+....... .+..+ ..+++++||
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~-~~~~~~~~~----~~~~~--g~~v~~vSA 149 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD-LEEARELLA----LYRAI--GYDVLELSA 149 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC-HHHHHHHHH----HHHHC--CCeEEEEeC
Confidence 3589999999999976432 222 23334455678999999999999632 221111111 11122 247999999
Q ss_pred cCCCChhhHHHHHH
Q 008003 335 VKKTGLDDLEVALL 348 (581)
Q Consensus 335 ktg~gI~eLl~~L~ 348 (581)
++|.|+++|++.|.
T Consensus 150 ~~g~gi~~L~~~l~ 163 (298)
T PRK00098 150 KEGEGLDELKPLLA 163 (298)
T ss_pred CCCccHHHHHhhcc
Confidence 99999999998763
No 379
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.87 E-value=0.00018 Score=73.23 Aligned_cols=162 Identities=18% Similarity=0.210 Sum_probs=93.0
Q ss_pred CCCCCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec---CCeEEEEEeCCCcchhhHHHhhcc
Q 008003 182 GTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS---TGASITFLDTPGHAAFSAMRKRGA 258 (581)
Q Consensus 182 ~~~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~---~g~~i~liDTpG~~~~~~~~~~~~ 258 (581)
....++.+.+|.++|+.++|||||+..|-+..- ..+|-...+....+..+ +-.++.+|=.-|......+...++
T Consensus 45 ~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al 121 (473)
T KOG3905|consen 45 TRSKLPSGKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFAL 121 (473)
T ss_pred ccccCCCCCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcc
Confidence 344678899999999999999999999987652 22222223333333211 223455555555433344443333
Q ss_pred c---cc-cEEEEEEeccCCCC-----hhHH----HH---------------------HHH--------------------
Q 008003 259 A---VT-DIVVLVVAADDGVM-----PQTL----EA---------------------IAH-------------------- 284 (581)
Q Consensus 259 ~---~a-DivllVvDa~~g~~-----~~~~----~~---------------------i~~-------------------- 284 (581)
. -+ -++||++|.++++. ..|. ++ |+.
T Consensus 122 ~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~ 201 (473)
T KOG3905|consen 122 PATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVG 201 (473)
T ss_pred cccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCccccccccc
Confidence 2 22 36788888887532 0010 00 000
Q ss_pred ----------------HhhcCCCEEEEEeCCCCCCC-------Chhh---HHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 285 ----------------ANAANVPIVVAINKCDKPAA-------DPER---VKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 285 ----------------~~~~~~piIvViNK~Dl~~~-------~~~~---~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
....++|++||++|||.... ..+. +...+..+.+ .+ ....|++|++...
T Consensus 202 ~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCL---r~--GaaLiyTSvKE~K 276 (473)
T KOG3905|consen 202 SSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCL---RY--GAALIYTSVKETK 276 (473)
T ss_pred CccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHH---Hc--CceeEEeeccccc
Confidence 01246899999999998421 0111 1111111111 12 3468999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|++-|..+|....
T Consensus 277 NidllyKYivhr~ 289 (473)
T KOG3905|consen 277 NIDLLYKYIVHRS 289 (473)
T ss_pred chHHHHHHHHHHh
Confidence 9999999998643
No 380
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.86 E-value=5.8e-05 Score=80.46 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=64.9
Q ss_pred cchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC--hhhHHhhhhhccchhhhcC
Q 008003 247 HAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD--PERVKNQLGAEGLELEDWG 324 (581)
Q Consensus 247 ~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~ 324 (581)
.++|..+.......+|++++|+|+.+.. ..+...+.... .+.|+++|+||+|+.... .+.....+.+. ....+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-~s~~~~l~~~~-~~~piilV~NK~DLl~k~~~~~~~~~~l~~~---~k~~g 124 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-GSLIPELKRFV-GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR---AKELG 124 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-CCccHHHHHHh-CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH---HHHcC
Confidence 4678888888888999999999997633 22333333222 267999999999996432 12222222111 11111
Q ss_pred C-cceEEEEeccCCCChhhHHHHHHHH
Q 008003 325 G-KVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 325 ~-~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
- ...++++||++|.|+++|++.|...
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1 1258999999999999999998653
No 381
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.86 E-value=0.00011 Score=61.36 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=60.8
Q ss_pred CcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEEeccCCCC----CC
Q 008003 363 PAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP----MA 436 (581)
Q Consensus 363 ~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~----~~ 436 (581)
|+..+|.+++..+ .|++++|++.+|++++||.+.+.+ ...+|++|.. +.+.+++|.||+.+.+ .+.++. ..
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~-~~~~~~~a~aGd~v~~-~l~~~~~~~v~~ 77 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYV-DDEEVDYAVAGENVRL-KLKGIDEEDISP 77 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEE-CCeECCEECCCCEEEE-EECCCCHHHCCC
Confidence 4667888898888 899999999999999999999965 4568999974 6788999999999976 334321 45
Q ss_pred CCeEE
Q 008003 437 GDDII 441 (581)
Q Consensus 437 Gd~~~ 441 (581)
|+.++
T Consensus 78 G~vl~ 82 (83)
T cd03698 78 GDVLC 82 (83)
T ss_pred CCEEe
Confidence 77654
No 382
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.83 E-value=1.6e-05 Score=85.42 Aligned_cols=55 Identities=25% Similarity=0.395 Sum_probs=48.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
-..|++||-|||||||+||+|.+.+ +.++..||-|.++....+. ..+.|.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls----~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS----PSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC----CCceecCCCCc
Confidence 3789999999999999999999975 5789999999999887764 36899999994
No 383
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.79 E-value=2.7e-05 Score=79.16 Aligned_cols=61 Identities=28% Similarity=0.386 Sum_probs=48.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc------ccccccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ------TSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~------~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
....+.|.|+|-||+|||||+|++.. ....++..||+|+.+....-.. +...+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCc
Confidence 34568999999999999999999854 2345678899999997744433 6778999999993
No 384
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.78 E-value=0.00024 Score=76.58 Aligned_cols=137 Identities=16% Similarity=0.293 Sum_probs=86.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccccc----------------c--------------------------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAK----------------E-------------------------------- 218 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~----------------~-------------------------------- 218 (581)
..-|+|+++|+-.+||||.+..+...++... +
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 3568999999999999999998854322100 0
Q ss_pred ------cCceeEeeeeEEEee--cCCeEEEEEeCCCc-------------chhhHHHhhccccccEEEEEEe-ccCCCC-
Q 008003 219 ------AGGITQHMGAFVVGM--STGASITFLDTPGH-------------AAFSAMRKRGAAVTDIVVLVVA-ADDGVM- 275 (581)
Q Consensus 219 ------~~g~T~d~~~~~~~~--~~g~~i~liDTpG~-------------~~~~~~~~~~~~~aDivllVvD-a~~g~~- 275 (581)
..|.|.......+.. ++=....++|.||. +....+...++.+.+.+|+|+- .+-...
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER 465 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER 465 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhh
Confidence 013333222222222 22257889999993 2334556678899999999983 221111
Q ss_pred hhHHHHHHHHhhcCCCEEEEEeCCCCCCC---ChhhHHhhhhhccchhhhc
Q 008003 276 PQTLEAIAHANAANVPIVVAINKCDKPAA---DPERVKNQLGAEGLELEDW 323 (581)
Q Consensus 276 ~~~~~~i~~~~~~~~piIvViNK~Dl~~~---~~~~~~~~l~~~~~~~~~~ 323 (581)
....+.+..+...|...|+|++|.|+... +++++...+....+..+.+
T Consensus 466 SnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKAL 516 (980)
T KOG0447|consen 466 SIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKAL 516 (980)
T ss_pred hhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhc
Confidence 11234455666678889999999999643 6788888877665555444
No 385
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.77 E-value=2.4e-05 Score=80.01 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=41.6
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc-cccc-------ccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS-LVAK-------EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~-------~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~ 252 (581)
.+...+++|++|||||||+|+|..+. .... .-..||++...+.+.. +| .++||||.+.|.-
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-gG---~iiDTPGf~~~~l 231 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-GG---WIIDTPGFRSLGL 231 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-CC---EEEeCCCCCccCc
Confidence 45589999999999999999997632 1111 1124666665555532 33 6899999876653
No 386
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=97.75 E-value=0.00018 Score=60.36 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=60.2
Q ss_pred EEEEEEe---ecCCCcEEEEEEeccEEeeCcEEEEccc--cc---eEEEEEcccCCcccccCCCCcEEEeccCCCCCCCC
Q 008003 367 YVVEARL---DKGRGPLTTAIVKAGTLVCGQHVVVGHE--WG---RIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGD 438 (581)
Q Consensus 367 ~V~e~~~---~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~---kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd 438 (581)
+|+.+.. ++..|.++++++.+|+|+.||.|..... .. ++..+.+.....+.++.+|+.+.+.|++++ ..||
T Consensus 2 ~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~-~~Gd 80 (85)
T cd03689 2 FVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNF-QIGD 80 (85)
T ss_pred EEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCc-cccC
Confidence 5677777 7888999999999999999999977432 23 344556666678999999999999999886 6999
Q ss_pred eEE
Q 008003 439 DII 441 (581)
Q Consensus 439 ~~~ 441 (581)
+++
T Consensus 81 tl~ 83 (85)
T cd03689 81 TLT 83 (85)
T ss_pred Eee
Confidence 986
No 387
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=97.75 E-value=0.00017 Score=59.89 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=61.4
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc--cceE---EEEEcccCCcccccCCCCcEEEeccCCCCCCCCe
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRI---RAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDD 439 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~kV---k~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~ 439 (581)
.++|+.+..++..|.++.++|.+|+|++||.|..... ..+| ..+.+....+++++.+|+.+.+.|+++. ..||+
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~-~~Gdt 80 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDT-ATGDT 80 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCC-ccCCE
Confidence 4678888888889999999999999999999986432 2234 4445555678899999999999999885 68888
Q ss_pred EE
Q 008003 440 II 441 (581)
Q Consensus 440 ~~ 441 (581)
+.
T Consensus 81 l~ 82 (83)
T cd04088 81 LC 82 (83)
T ss_pred ee
Confidence 74
No 388
>PRK00098 GTPase RsgA; Reviewed
Probab=97.73 E-value=3.2e-05 Score=80.29 Aligned_cols=59 Identities=29% Similarity=0.424 Sum_probs=39.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccC-------ceeEeeeeEEEeecCCeEEEEEeCCCcchh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAG-------GITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~-------g~T~d~~~~~~~~~~g~~i~liDTpG~~~~ 250 (581)
.+..++++|++|+|||||+|+|.+... ..++.+ .||++.....+. ++ ..++||||...+
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~--~~--~~~~DtpG~~~~ 229 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP--GG--GLLIDTPGFSSF 229 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC--CC--cEEEECCCcCcc
Confidence 367899999999999999999987543 222222 255544433332 22 488999997643
No 389
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=97.72 E-value=0.00019 Score=60.10 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=61.2
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc-----cceEE---EEEcccCCcccccCCCCcEEEeccCCCCCC
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE-----WGRIR---AIRDMVGKSTDKARPAMPVEIEGLKGLPMA 436 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~-----~~kVk---~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~ 436 (581)
.+.|+.+..++..|.+++++|.+|+|+.||.|.+... ..+|. .+.+.+..+++++.+|+.+.+.|++++ ..
T Consensus 2 ~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~-~~ 80 (86)
T cd03691 2 QMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDI-TI 80 (86)
T ss_pred eEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCC-cc
Confidence 5788899999999999999999999999999976322 23343 445666678999999999999999876 58
Q ss_pred CCeEE
Q 008003 437 GDDII 441 (581)
Q Consensus 437 Gd~~~ 441 (581)
||++.
T Consensus 81 Gdtl~ 85 (86)
T cd03691 81 GDTIC 85 (86)
T ss_pred cceec
Confidence 88763
No 390
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.72 E-value=0.00024 Score=77.59 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=93.9
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
.++-...-++|+.|+|||.|++++.++.+..+..+.+...+....+... ....+.+-|.+-. ....+.... ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 3445678899999999999999999987665444444333333333332 2345566665543 222222222 679999
Q ss_pred EEEEeccCCCChhHHHHH-HH-HhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 265 VLVVAADDGVMPQTLEAI-AH-ANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 265 llVvDa~~g~~~~~~~~i-~~-~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
+++||.+++....-...+ .. -.....|+++|.+|+|+.... ++..-...+ ...+++ -.+.+.+|.++ .+=.+
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~-Q~~~iqpde---~~~~~~-i~~P~~~S~~~-~~s~~ 573 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVP-QRYSIQPDE---FCRQLG-LPPPIHISSKT-LSSNE 573 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhh-hccCCChHH---HHHhcC-CCCCeeeccCC-CCCch
Confidence 999999964433322211 11 122578999999999995321 111000010 011111 12456777775 22288
Q ss_pred HHHHHHHHHHHhh
Q 008003 343 LEVALLLQAEMMN 355 (581)
Q Consensus 343 Ll~~L~~~~~~~~ 355 (581)
++..|...+..+.
T Consensus 574 lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 574 LFIKLATMAQYPH 586 (625)
T ss_pred HHHHHHHhhhCCC
Confidence 9999988776544
No 391
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00014 Score=77.46 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=65.7
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcccccc---cccCceeEeee------------------eEEEee---------
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVA---KEAGGITQHMG------------------AFVVGM--------- 233 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~---~~~~g~T~d~~------------------~~~~~~--------- 233 (581)
....++..++++|++|+||||++..|....... ....-+|.|.. ...+..
T Consensus 132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~ 211 (374)
T PRK14722 132 ALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA 211 (374)
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH
Confidence 345678899999999999999999986532110 01111222221 111110
Q ss_pred -cCCeEEEEEeCCCcchhhHHH---hh---ccccccEEEEEEeccCCCChhHHHHHHHHh-hcCC-------CEEEEEeC
Q 008003 234 -STGASITFLDTPGHAAFSAMR---KR---GAAVTDIVVLVVAADDGVMPQTLEAIAHAN-AANV-------PIVVAINK 298 (581)
Q Consensus 234 -~~g~~i~liDTpG~~~~~~~~---~~---~~~~aDivllVvDa~~g~~~~~~~~i~~~~-~~~~-------piIvViNK 298 (581)
-.+..+.|+||||...+.... .. .....+-.+||++++.+...-. +.+.... ..+. .-=+++||
T Consensus 212 ~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEEEEec
Confidence 035689999999965433221 11 2234456799999987543222 2222222 1112 23467899
Q ss_pred CCCCC
Q 008003 299 CDKPA 303 (581)
Q Consensus 299 ~Dl~~ 303 (581)
.|-..
T Consensus 291 lDEt~ 295 (374)
T PRK14722 291 LDEAS 295 (374)
T ss_pred cccCC
Confidence 99753
No 392
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.70 E-value=0.00016 Score=75.77 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=60.0
Q ss_pred eEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCC-----------ChhHHHHHHHHhh----
Q 008003 223 TQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-----------MPQTLEAIAHANA---- 287 (581)
Q Consensus 223 T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-----------~~~~~~~i~~~~~---- 287 (581)
|..+....+.+ ++..+.+||++|++.....|..++..++++++|+|.++-. ..+.+..+..+..
T Consensus 148 T~Gi~~~~f~~-~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 148 TTGIVETKFTI-KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred cCCeeEEEEEe-cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 44555666666 7899999999999999999999999999999999998621 1223333333322
Q ss_pred cCCCEEEEEeCCCCC
Q 008003 288 ANVPIVVAINKCDKP 302 (581)
Q Consensus 288 ~~~piIvViNK~Dl~ 302 (581)
.++|+++++||.|+.
T Consensus 227 ~~~pill~~NK~D~f 241 (317)
T cd00066 227 ANTSIILFLNKKDLF 241 (317)
T ss_pred cCCCEEEEccChHHH
Confidence 468999999999974
No 393
>PRK12288 GTPase RsgA; Reviewed
Probab=97.69 E-value=0.00016 Score=76.64 Aligned_cols=86 Identities=24% Similarity=0.281 Sum_probs=57.4
Q ss_pred cccccEEEEEEeccCCCChhHHHH-HHHHhhcCCCEEEEEeCCCCCCCChh-hHHhhhhhccchhhhcCCcceEEEEecc
Q 008003 258 AAVTDIVVLVVAADDGVMPQTLEA-IAHANAANVPIVVAINKCDKPAADPE-RVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (581)
Q Consensus 258 ~~~aDivllVvDa~~g~~~~~~~~-i~~~~~~~~piIvViNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~ii~iSAk 335 (581)
+.++|.+++|++.+.......++- +..+...++|+++|+||+||.+.... .....+. .+..+ .++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~----~y~~~--g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLD----IYRNI--GYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHH----HHHhC--CCeEEEEeCC
Confidence 567999999999876554433332 33344568999999999999643211 1111111 11222 2589999999
Q ss_pred CCCChhhHHHHHHH
Q 008003 336 KKTGLDDLEVALLL 349 (581)
Q Consensus 336 tg~gI~eLl~~L~~ 349 (581)
+|.|+++|++.|..
T Consensus 192 tg~GideL~~~L~~ 205 (347)
T PRK12288 192 TGEGLEELEAALTG 205 (347)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999998864
No 394
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.69 E-value=0.00016 Score=67.98 Aligned_cols=63 Identities=22% Similarity=0.147 Sum_probs=36.8
Q ss_pred CeEEEEEeCCCcchhhHHH--------hhccccccEEEEEEeccCCCCh--hHHHHHHHHhhcCCCEEEEEeCCCC
Q 008003 236 GASITFLDTPGHAAFSAMR--------KRGAAVTDIVVLVVAADDGVMP--QTLEAIAHANAANVPIVVAINKCDK 301 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~~--------~~~~~~aDivllVvDa~~g~~~--~~~~~i~~~~~~~~piIvViNK~Dl 301 (581)
.....|+||||..+-.... ....-..|.+++++|+...... .......++... =++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 4567899999964322222 1234568999999998752111 111122333322 2579999996
No 395
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=4.7e-05 Score=79.76 Aligned_cols=115 Identities=30% Similarity=0.379 Sum_probs=85.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc----------------------------cccccccCceeEeeeeEEEeecCCeEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT----------------------------SLVAKEAGGITQHMGAFVVGMSTGASI 239 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~----------------------------~~~~~~~~g~T~d~~~~~~~~~~g~~i 239 (581)
-.++++++||.++||||+.-..++. ........+++.++....+.. ..+.+
T Consensus 6 ~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t-~k~~i 84 (391)
T KOG0052|consen 6 IHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SKYYV 84 (391)
T ss_pred cccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccc-eeEEE
Confidence 3578999999999999987643210 001111234665555555554 56889
Q ss_pred EEEeCCCcchhhHHHhhccccccEEEEEEeccCC-------CChhHHHHHHHHhhcCC-CEEEEEeCCCCCC
Q 008003 240 TFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-------VMPQTLEAIAHANAANV-PIVVAINKCDKPA 303 (581)
Q Consensus 240 ~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g-------~~~~~~~~i~~~~~~~~-piIvViNK~Dl~~ 303 (581)
+++|.|||.+|...+..+.++||+.++++.+..| ...|+.++.......++ ++++.+||+|-..
T Consensus 85 ~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 85 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 9999999999999999999999999999998442 34688888877777764 6899999999854
No 396
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.66 E-value=0.00019 Score=60.41 Aligned_cols=75 Identities=23% Similarity=0.266 Sum_probs=60.0
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc----ccceEEEEEcccCCcccccCCCCcEEEeccCCCC----CC
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH----EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP----MA 436 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~----~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~----~~ 436 (581)
..+|.+++..++.|++++|++.+|+++.||.+.+.+ ...+|++|. .+.+.+++|.||+.+.+ .|.++. ..
T Consensus 2 r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~-~~~~~~~~a~~G~~v~l-~l~~~~~~~v~r 79 (87)
T cd03697 2 LMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIE-MFRKTLDEAEAGDNVGV-LLRGVKREDVER 79 (87)
T ss_pred EeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEE-ECCcCCCEECCCCEEEE-EECCCCHHHcCC
Confidence 456778888889999999999999999999998753 456899997 46889999999999987 444432 35
Q ss_pred CCeEE
Q 008003 437 GDDII 441 (581)
Q Consensus 437 Gd~~~ 441 (581)
|+.++
T Consensus 80 G~vl~ 84 (87)
T cd03697 80 GMVLA 84 (87)
T ss_pred ccEEe
Confidence 77664
No 397
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.66 E-value=0.00029 Score=58.67 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=59.8
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEEeccCCCC----CCCC
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP----MAGD 438 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~----~~Gd 438 (581)
..+|.++|..++.|.+++|++.+|++++|+.+.+.+ ..++|++|.. +++.+++|.||+.+.+ .+.+.. ..|+
T Consensus 2 r~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~-~~~~~~~a~aGd~v~i-~l~~~~~~~i~~G~ 79 (83)
T cd03696 2 RLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQV-HGKDVEEAKAGDRVAL-NLTGVDAKDLERGD 79 (83)
T ss_pred EEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEE-CCcCcCEEcCCCEEEE-EEcCCCHHHcCCcc
Confidence 456788888889999999999999999999999965 4578999974 6788999999999987 344431 2565
Q ss_pred eEE
Q 008003 439 DII 441 (581)
Q Consensus 439 ~~~ 441 (581)
.++
T Consensus 80 vl~ 82 (83)
T cd03696 80 VLS 82 (83)
T ss_pred EEc
Confidence 543
No 398
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.65 E-value=0.00029 Score=74.57 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=60.6
Q ss_pred eEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCC-----------CChhHHHHHHHHhh----
Q 008003 223 TQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-----------VMPQTLEAIAHANA---- 287 (581)
Q Consensus 223 T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g-----------~~~~~~~~i~~~~~---- 287 (581)
|..+....+.+ ++..+.+||.+|++.....|..++..++++++|+|.++- ...+....+..+..
T Consensus 171 T~Gi~~~~f~~-~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 171 TTGIQETAFIV-KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred ccceEEEEEEE-CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 44555666666 788999999999999999999999999999999999862 12233344443332
Q ss_pred cCCCEEEEEeCCCCC
Q 008003 288 ANVPIVVAINKCDKP 302 (581)
Q Consensus 288 ~~~piIvViNK~Dl~ 302 (581)
.++|+++++||.|+.
T Consensus 250 ~~~piil~~NK~D~~ 264 (342)
T smart00275 250 ANTSIILFLNKIDLF 264 (342)
T ss_pred cCCcEEEEEecHHhH
Confidence 468999999999984
No 399
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.63 E-value=5.9e-05 Score=77.90 Aligned_cols=59 Identities=27% Similarity=0.397 Sum_probs=40.2
Q ss_pred CCEEEEEccCCCCcchHhhhhhccccc-ccc-------cCceeEeeeeEEEeecCCeEEEEEeCCCcchhh
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLV-AKE-------AGGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~-~~~-------~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~ 251 (581)
+..++++|++|+|||||+|.|.+.... .+. -.++|++.....+. .+ ..++||||...|.
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~--~~--~~liDtPG~~~~~ 227 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP--GG--GLLIDTPGFREFG 227 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC--CC--CEEEECCCCCccC
Confidence 478999999999999999999875432 111 12356665444442 12 3699999987654
No 400
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.62 E-value=0.00065 Score=74.49 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=53.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec---CCeEEEEEeCCCcchhhHHHhhcccc--
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS---TGASITFLDTPGHAAFSAMRKRGAAV-- 260 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~---~g~~i~liDTpG~~~~~~~~~~~~~~-- 260 (581)
......|.|+|..++|||||+.+|.+.. ...+|...++....+.-. +-..+.+|-..|-..+..+..-.+..
T Consensus 22 ~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~ 98 (472)
T PF05783_consen 22 LPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN 98 (472)
T ss_pred CCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence 3456899999999999999999997643 223344444433333211 12356777666655555555433322
Q ss_pred --ccEEEEEEeccCCC
Q 008003 261 --TDIVVLVVAADDGV 274 (581)
Q Consensus 261 --aDivllVvDa~~g~ 274 (581)
--++|+|+|.+.++
T Consensus 99 l~~t~vvIvlDlS~PW 114 (472)
T PF05783_consen 99 LPNTLVVIVLDLSKPW 114 (472)
T ss_pred ccceEEEEEecCCChH
Confidence 24678888988753
No 401
>PRK01889 GTPase RsgA; Reviewed
Probab=97.61 E-value=0.00024 Score=75.56 Aligned_cols=83 Identities=27% Similarity=0.254 Sum_probs=59.6
Q ss_pred cccccEEEEEEeccCCCChhHH-HHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 258 AAVTDIVVLVVAADDGVMPQTL-EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 258 ~~~aDivllVvDa~~g~~~~~~-~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
+.++|.+++|++++.+...... ..+..+...++|.++|+||+||.+. .+.....+... ...++++++|+++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~~~~~~~~~~~-------~~g~~Vi~vSa~~ 181 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-AEEKIAEVEAL-------APGVPVLAVSALD 181 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-HHHHHHHHHHh-------CCCCcEEEEECCC
Confidence 5788999999999765555333 4455566788999999999999743 22222222221 2246899999999
Q ss_pred CCChhhHHHHHH
Q 008003 337 KTGLDDLEVALL 348 (581)
Q Consensus 337 g~gI~eLl~~L~ 348 (581)
|.|+++|.++|.
T Consensus 182 g~gl~~L~~~L~ 193 (356)
T PRK01889 182 GEGLDVLAAWLS 193 (356)
T ss_pred CccHHHHHHHhh
Confidence 999999999874
No 402
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.55 E-value=0.00052 Score=57.04 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=58.1
Q ss_pred CcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc--cceEEEEEcccCCcccccCCCCcEEEeccCCCC----CC
Q 008003 363 PAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP----MA 436 (581)
Q Consensus 363 ~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~----~~ 436 (581)
|+..+|.+++... |++++|++.+|++++||.+.+.+. ..+|++|.. +++.+++|.+|+.+.+ .|.++. ..
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~-~~~~~~~a~aGd~v~l-~l~~i~~~~v~~ 76 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYN-EDVEVRYARPGENVRL-RLKGIEEEDISP 76 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEE-CCEECCEECCCCEEEE-EecCCCHHHCCC
Confidence 4567788888653 899999999999999999999654 568899974 5788999999999987 444321 35
Q ss_pred CCeEE
Q 008003 437 GDDII 441 (581)
Q Consensus 437 Gd~~~ 441 (581)
|+.++
T Consensus 77 G~vl~ 81 (82)
T cd04089 77 GFVLC 81 (82)
T ss_pred CCEEe
Confidence 66554
No 403
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=97.54 E-value=0.00056 Score=56.70 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=58.7
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc--cce---EEEEEcccCCcccccCCCCcEEEeccCCCCCCCCe
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGR---IRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDD 439 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~k---Vk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~ 439 (581)
.+.|+.+..++. |.++.++|.+|+|++||.|..... ..+ +..+.+.+..+++++.+|+.+.+.|+. + ..||+
T Consensus 2 ~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~-~~Gdt 78 (81)
T cd04091 2 VGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-C-ASGDT 78 (81)
T ss_pred eEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-c-ccCCE
Confidence 467888888876 999999999999999999987442 233 444555556789999999999999986 4 78888
Q ss_pred EE
Q 008003 440 II 441 (581)
Q Consensus 440 ~~ 441 (581)
++
T Consensus 79 l~ 80 (81)
T cd04091 79 FT 80 (81)
T ss_pred ec
Confidence 74
No 404
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.53 E-value=0.00017 Score=78.38 Aligned_cols=113 Identities=22% Similarity=0.198 Sum_probs=62.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc------ccc--cc--ccC-------------ceeEeeeeEE----------Eee
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT------SLV--AK--EAG-------------GITQHMGAFV----------VGM 233 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~------~~~--~~--~~~-------------g~T~d~~~~~----------~~~ 233 (581)
.++..|+++|.+|+||||++..|... ++. .. ..+ ++........ +..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 35678999999999999999887431 110 00 000 1110000000 000
Q ss_pred cCCeEEEEEeCCCcchhhHHH------hhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCC
Q 008003 234 STGASITFLDTPGHAAFSAMR------KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKP 302 (581)
Q Consensus 234 ~~g~~i~liDTpG~~~~~~~~------~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~ 302 (581)
..+..+.++||||........ ...+..+|.+++|+|++.+ .+..+....... ..+ .-+++||+|-.
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCC
Confidence 023579999999954433221 1234568999999999875 233333333221 233 45788999974
No 405
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.48 E-value=6.5e-05 Score=78.59 Aligned_cols=63 Identities=24% Similarity=0.380 Sum_probs=52.0
Q ss_pred cCCCCCCCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 181 EGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 181 ~~~~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
.....+++.++|+|+|-||+||||++|+|...+. .++..||+|+......+ +..+.|+|.||.
T Consensus 244 ~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L----dk~i~llDsPgi 307 (435)
T KOG2484|consen 244 CRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL----DKKIRLLDSPGI 307 (435)
T ss_pred ccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec----cCCceeccCCce
Confidence 3444567889999999999999999999988765 67889999998866654 347999999994
No 406
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=97.43 E-value=0.00098 Score=55.90 Aligned_cols=76 Identities=24% Similarity=0.205 Sum_probs=58.0
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc--cceEEE--EEcccCCcccccCCCCcEEEe-cc---CCCCCC
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRA--IRDMVGKSTDKARPAMPVEIE-GL---KGLPMA 436 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~kVk~--i~~~~g~~v~~a~~~~~v~i~-gl---~~~~~~ 436 (581)
.+.|+.+..++..|.++.+++.+|+|+.||.+..... ..+|.. +.+.+..++.++.+|+.+.+. |+ +++ ..
T Consensus 2 ~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~~g~~~l~~~-~~ 80 (86)
T cd03699 2 RALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYIIAGIKTVKDA-RV 80 (86)
T ss_pred EEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEEccccccCcc-cc
Confidence 5778888899999999999999999999999976431 233333 345556788999999999885 54 333 58
Q ss_pred CCeEE
Q 008003 437 GDDII 441 (581)
Q Consensus 437 Gd~~~ 441 (581)
||+++
T Consensus 81 Gdtl~ 85 (86)
T cd03699 81 GDTIT 85 (86)
T ss_pred ccEee
Confidence 88874
No 407
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.38 E-value=0.00044 Score=64.27 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=37.0
Q ss_pred CeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCC
Q 008003 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCD 300 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~D 300 (581)
++.+.|+||||..... ...+..||.+++|...+. .+....++. .-....=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~---~D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGA---GDDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCc---hhHHHHhhh-hHhhhcCEEEEeCCC
Confidence 5789999999954322 347788999999987652 222222221 112234578999998
No 408
>PRK13796 GTPase YqeH; Provisional
Probab=97.37 E-value=0.00077 Score=72.04 Aligned_cols=96 Identities=30% Similarity=0.308 Sum_probs=58.6
Q ss_pred hhhHHHhhcccccc-EEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC--hhhHHhhhhhccchhhhcCC
Q 008003 249 AFSAMRKRGAAVTD-IVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD--PERVKNQLGAEGLELEDWGG 325 (581)
Q Consensus 249 ~~~~~~~~~~~~aD-ivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~ 325 (581)
+|..... .+..+| ++++|+|+.+.. ..+...+.... .+.|+++|+||+|+...+ .+.....+... ....+-
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-~s~~~~L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l~~~---~k~~g~ 131 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFN-GSWIPGLHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQE---AKELGL 131 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCC-CchhHHHHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHHHHH---HHhcCC
Confidence 4555433 444455 999999998733 33344444332 367999999999996432 12222221111 111111
Q ss_pred -cceEEEEeccCCCChhhHHHHHHHH
Q 008003 326 -KVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 326 -~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
...++.+||++|.|+++|++.|...
T Consensus 132 ~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 132 RPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 1258999999999999999999653
No 409
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.33 E-value=0.0011 Score=55.07 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=58.4
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEEeccCCC--CCCCCeE
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGL--PMAGDDI 440 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~--~~~Gd~~ 440 (581)
...|.+.|...+.|..++|++.+|++++||.+.+.+ ...+|++|.. +++.++.|.||+++.| .+.+. -..|+.+
T Consensus 2 r~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~-~~~~~~~a~aGd~v~l-~l~~~~~i~~G~vl 79 (81)
T cd03695 2 RFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIET-FDGELDEAGAGESVTL-TLEDEIDVSRGDVI 79 (81)
T ss_pred EeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEE-CCcEeCEEcCCCEEEE-EECCccccCCCCEE
Confidence 456788887777777899999999999999999965 4568999974 6888999999999977 33321 1356665
Q ss_pred E
Q 008003 441 I 441 (581)
Q Consensus 441 ~ 441 (581)
+
T Consensus 80 ~ 80 (81)
T cd03695 80 V 80 (81)
T ss_pred e
Confidence 4
No 410
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.32 E-value=0.00032 Score=68.31 Aligned_cols=94 Identities=24% Similarity=0.294 Sum_probs=50.2
Q ss_pred CCeEEEEEeCCCcchhhHH----Hhh--ccccccEEEEEEeccCCCChhHHHHH-HHHhhcCCCEEEEEeCCCCCCCChh
Q 008003 235 TGASITFLDTPGHAAFSAM----RKR--GAAVTDIVVLVVAADDGVMPQTLEAI-AHANAANVPIVVAINKCDKPAADPE 307 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~----~~~--~~~~aDivllVvDa~~g~~~~~~~~i-~~~~~~~~piIvViNK~Dl~~~~~~ 307 (581)
+++.+.|+||||....... +.. .....+-++||+|++.+. +..+.+ ......+.. =++++|.|-... ..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~~~-~lIlTKlDet~~-~G 157 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALAFYEAFGID-GLILTKLDETAR-LG 157 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHHHHHHSSTC-EEEEESTTSSST-TH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHHHhhcccCc-eEEEEeecCCCC-cc
Confidence 3567999999995443321 111 122568899999998743 333333 333333343 456999998532 23
Q ss_pred hHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 308 RVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
.........+ .|+-.+| +|+++++|
T Consensus 158 ~~l~~~~~~~---------~Pi~~it--~Gq~V~Dl 182 (196)
T PF00448_consen 158 ALLSLAYESG---------LPISYIT--TGQRVDDL 182 (196)
T ss_dssp HHHHHHHHHT---------SEEEEEE--SSSSTTGE
T ss_pred cceeHHHHhC---------CCeEEEE--CCCChhcC
Confidence 3333333222 2444444 57777554
No 411
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.00092 Score=73.70 Aligned_cols=116 Identities=20% Similarity=0.257 Sum_probs=63.6
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcc--------ccc--ccccCce-----------eEeeeeEEEee---------
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQT--------SLV--AKEAGGI-----------TQHMGAFVVGM--------- 233 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~--------~~~--~~~~~g~-----------T~d~~~~~~~~--------- 233 (581)
+...++..|+|+|++|+||||++..|... ++. ..+.-.+ ...+.......
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~ 424 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE 424 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH
Confidence 45567899999999999999999888542 111 1100000 00000011000
Q ss_pred -cCCeEEEEEeCCCcchhhHHHh------hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 234 -STGASITFLDTPGHAAFSAMRK------RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 234 -~~g~~i~liDTpG~~~~~~~~~------~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
..++.+.|+||||......... .... ....++|++++.+. .++.+.+..+... .+.-+++||+|..
T Consensus 425 ~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~-~Dl~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 425 RLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHF-SDLDEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred HhccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCCh-hHHHHHHHHHHhh-CCeEEEEecCcCc
Confidence 0357899999999643322111 1111 23467777776532 2333444444332 4677899999984
No 412
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.23 E-value=0.00046 Score=84.21 Aligned_cols=112 Identities=23% Similarity=0.211 Sum_probs=65.9
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccccc------c--CceeEeeeeEEEeecCCeEEEEEeCCCcc--------
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKE------A--GGITQHMGAFVVGMSTGASITFLDTPGHA-------- 248 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~------~--~g~T~d~~~~~~~~~~g~~i~liDTpG~~-------- 248 (581)
.+..-|=.+|+|++|+|||||++.- +-.+...+ . .+-|+++ .+.+ .....++||+|.-
T Consensus 107 ~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c---~wwf--~~~avliDtaG~y~~~~~~~~ 180 (1169)
T TIGR03348 107 YLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNC---DWWF--TDEAVLIDTAGRYTTQDSDPE 180 (1169)
T ss_pred hhhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCccc---ceEe--cCCEEEEcCCCccccCCCccc
Confidence 3456688999999999999999986 22222211 1 1122221 1111 2356799999921
Q ss_pred hhhHHHh---------hccccccEEEEEEeccCCCC--hhHH-HH----------HHHHhhcCCCEEEEEeCCCCC
Q 008003 249 AFSAMRK---------RGAAVTDIVVLVVAADDGVM--PQTL-EA----------IAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 249 ~~~~~~~---------~~~~~aDivllVvDa~~g~~--~~~~-~~----------i~~~~~~~~piIvViNK~Dl~ 302 (581)
.....+. +.-+-.|+||+++|+.+-.. ++.. .+ +........|+.|++||||+.
T Consensus 181 ~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 181 EDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred ccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 1111222 22356799999999986221 1111 11 112223578999999999986
No 413
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.19 E-value=0.0034 Score=66.78 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=77.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc---cccccCceeEeeeeE-----------------EEeec-----------C
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL---VAKEAGGITQHMGAF-----------------VVGMS-----------T 235 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~---~~~~~~g~T~d~~~~-----------------~~~~~-----------~ 235 (581)
..+..|++||++||||||.+-.|..... .....+-+|.|..-. .+..+ .
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 3488999999999999999988854322 111222334432210 00000 3
Q ss_pred CeEEEEEeCCCcchhhHHHh----hcc--ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhH
Q 008003 236 GASITFLDTPGHAAFSAMRK----RGA--AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV 309 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~~~----~~~--~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~ 309 (581)
.+.+.|+||+|......+.. .++ ....-+.||++++.. ...-.+.+......++. =+++||+|-.. .....
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET~-s~G~~ 357 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDETT-SLGNL 357 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEcccccC-chhHH
Confidence 46899999999765543322 222 234556777887652 12233444554433333 35689999753 23333
Q ss_pred HhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 310 KNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 310 ~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
...+.+.+ .|+-+++ +|++|.+
T Consensus 358 ~s~~~e~~---------~PV~YvT--~GQ~VPe 379 (407)
T COG1419 358 FSLMYETR---------LPVSYVT--NGQRVPE 379 (407)
T ss_pred HHHHHHhC---------CCeEEEe--CCCCCCc
Confidence 44333322 2333332 5777764
No 414
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=97.15 E-value=0.00046 Score=55.89 Aligned_cols=64 Identities=30% Similarity=0.303 Sum_probs=50.6
Q ss_pred CcEEEEEEeccEEeeCcEEEEcc--c-----cceEEEEEcccC---CcccccCCCCcEEEeccCCCCCCCCeEE
Q 008003 378 GPLTTAIVKAGTLVCGQHVVVGH--E-----WGRIRAIRDMVG---KSTDKARPAMPVEIEGLKGLPMAGDDII 441 (581)
Q Consensus 378 G~v~~~~V~~GtLk~gd~i~~g~--~-----~~kVk~i~~~~g---~~v~~a~~~~~v~i~gl~~~~~~Gd~~~ 441 (581)
|.+++++|.+|+|++||.|.+.+ . ..+|+.|...++ ..+..+.+|..+.+.++++....||+++
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 67899999999999999999933 1 278999987666 5566777777777778888447899875
No 415
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.13 E-value=0.0014 Score=62.20 Aligned_cols=66 Identities=24% Similarity=0.261 Sum_probs=39.4
Q ss_pred CCeEEEEEeCCCcchhhH----HHhh--ccccccEEEEEEeccCCCChhHHHHHHH-HhhcCCCEEEEEeCCCCCC
Q 008003 235 TGASITFLDTPGHAAFSA----MRKR--GAAVTDIVVLVVAADDGVMPQTLEAIAH-ANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~----~~~~--~~~~aDivllVvDa~~g~~~~~~~~i~~-~~~~~~piIvViNK~Dl~~ 303 (581)
.++.+.++||||...+.. .... .....|.+++|+|+..+. ...+.... ....+ ..-+++||.|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~-~~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCC-CCEEEEECCcCCC
Confidence 356799999999743321 1111 123489999999986432 23333322 22334 3567789999854
No 416
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.12 E-value=0.0043 Score=65.03 Aligned_cols=135 Identities=17% Similarity=0.188 Sum_probs=72.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc------ccccccCceeEee------eeEEEeecC--------------------
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS------LVAKEAGGITQHM------GAFVVGMST-------------------- 235 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~------~~~~~~~g~T~d~------~~~~~~~~~-------------------- 235 (581)
+-|..+|.|--|+|||||+|+|.... ++..+.+.+..|- ....+.+.+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 45788999999999999999997531 1223332121110 011111111
Q ss_pred -------CeEEEEEeCCCcchhhHHHhhcc--------ccccEEEEEEeccCCCCh--hHHHHHHHHhhcCCCEEEEEeC
Q 008003 236 -------GASITFLDTPGHAAFSAMRKRGA--------AVTDIVVLVVAADDGVMP--QTLEAIAHANAANVPIVVAINK 298 (581)
Q Consensus 236 -------g~~i~liDTpG~~~~~~~~~~~~--------~~aDivllVvDa~~g~~~--~~~~~i~~~~~~~~piIvViNK 298 (581)
.....++.|.|..+-........ -..|.++.|+|+...... .......++.. -=++++||
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~IvlnK 159 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADRILLTK 159 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCEEEEec
Confidence 24568899999765444333221 134889999999763211 11112223322 23689999
Q ss_pred CCCCCCChhhHHhhhhhccchhhhcCCcceEEEEe
Q 008003 299 CDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 299 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iS 333 (581)
+|+.+. .+.+...+. ...+..+++.++
T Consensus 160 ~Dl~~~-~~~~~~~l~-------~lnp~a~i~~~~ 186 (318)
T PRK11537 160 TDVAGE-AEKLRERLA-------RINARAPVYTVV 186 (318)
T ss_pred cccCCH-HHHHHHHHH-------HhCCCCEEEEec
Confidence 999753 233333332 233445666554
No 417
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.12 E-value=0.0012 Score=64.92 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=43.6
Q ss_pred EEEEEeC-CCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcC-CCEEEEEeCCCCC
Q 008003 238 SITFLDT-PGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAAN-VPIVVAINKCDKP 302 (581)
Q Consensus 238 ~i~liDT-pG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~-~piIvViNK~Dl~ 302 (581)
.+.++|| ||.+.|..- ..+.+|.+|+|+|.+.....-....-+.....+ .++.+|+||+|-.
T Consensus 135 e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 5677777 666666543 346899999999998643333344444555677 7899999999963
No 418
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0014 Score=70.99 Aligned_cols=115 Identities=19% Similarity=0.242 Sum_probs=62.9
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcccccc---cccCceeEeee------------------eEE-----------E
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVA---KEAGGITQHMG------------------AFV-----------V 231 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~---~~~~g~T~d~~------------------~~~-----------~ 231 (581)
+....+.+|+++|++|+||||++..|.+..... ...+-++.|.. ... .
T Consensus 186 ~~~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~ 265 (420)
T PRK14721 186 EIIEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH 265 (420)
T ss_pred cccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH
Confidence 344677899999999999999999886531100 00000111110 000 0
Q ss_pred eecCCeEEEEEeCCCcchhhHHH----h--hccccccEEEEEEeccCCCChhHHHH-HHHHhhcCCCEEEEEeCCCCC
Q 008003 232 GMSTGASITFLDTPGHAAFSAMR----K--RGAAVTDIVVLVVAADDGVMPQTLEA-IAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 232 ~~~~g~~i~liDTpG~~~~~~~~----~--~~~~~aDivllVvDa~~g~~~~~~~~-i~~~~~~~~piIvViNK~Dl~ 302 (581)
.. .+..+.++||+|........ . ......+-.+||+|++.+ .++... +......+. -=+++||.|-.
T Consensus 266 ~l-~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~~-~~~I~TKlDEt 339 (420)
T PRK14721 266 EL-RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHGI-HGCIITKVDEA 339 (420)
T ss_pred Hh-cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCCC-CEEEEEeeeCC
Confidence 01 35678999999954432211 1 112234567899999853 333332 333332222 35678999975
No 419
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.00072 Score=71.98 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=61.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc------c--ccccc---Cce--------eEeeeeEEEee-----------c--
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS------L--VAKEA---GGI--------TQHMGAFVVGM-----------S-- 234 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~------~--~~~~~---~g~--------T~d~~~~~~~~-----------~-- 234 (581)
.++.+|+++|++|+||||++..|...- + ...+. +.+ ..++....... .
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 346789999999999999999985311 1 00000 000 00000000000 0
Q ss_pred CCeEEEEEeCCCcchhhHH----Hhhc--cccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCC
Q 008003 235 TGASITFLDTPGHAAFSAM----RKRG--AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~----~~~~--~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~ 303 (581)
.++.+.|+||||....... .... ....|-++||+|++.+. .+..+.+......++ -=+++||.|-..
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~i-dglI~TKLDET~ 391 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDETA 391 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCC-CEEEEEcccCCC
Confidence 1468999999995432211 1111 23457789999986432 222344444443332 356789999753
No 420
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.98 E-value=0.0057 Score=64.09 Aligned_cols=146 Identities=24% Similarity=0.262 Sum_probs=81.8
Q ss_pred CEEEEEccCCCCcchHhhhhhccc------ccccccCceeEee-------eeEEEeecC---------------------
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTS------LVAKEAGGITQHM-------GAFVVGMST--------------------- 235 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~------~~~~~~~g~T~d~-------~~~~~~~~~--------------------- 235 (581)
|..+|-|--|+|||||+|.|+.+. +++++.+-+..|- ....+++.+
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 567888999999999999997642 2445555444441 111222222
Q ss_pred --CeEEEEEeCCCcchhhHHHhh--------ccccccEEEEEEeccCCCChhH---HHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 236 --GASITFLDTPGHAAFSAMRKR--------GAAVTDIVVLVVAADDGVMPQT---LEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 236 --g~~i~liDTpG~~~~~~~~~~--------~~~~aDivllVvDa~~g~~~~~---~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
+....++.|-|...-.+.... ..-.-|.++-|+|+..-..... .....++.. -=++++||.|+.
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcEEEEecccCC
Confidence 235678888886544333221 2234588999999987332221 122233322 237899999998
Q ss_pred CCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHH
Q 008003 303 AADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (581)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~ 345 (581)
+... ...+ ...+....+..+++.+|. .+....+++.
T Consensus 159 ~~~~---l~~l---~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 159 DAEE---LEAL---EARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred CHHH---HHHH---HHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 5431 1111 122334445668888887 3344444443
No 421
>PRK10867 signal recognition particle protein; Provisional
Probab=96.97 E-value=0.0035 Score=68.15 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=37.0
Q ss_pred CCeEEEEEeCCCcchhhHH-H---h--hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCC
Q 008003 235 TGASITFLDTPGHAAFSAM-R---K--RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKP 302 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~-~---~--~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~ 302 (581)
.++.+.|+||||.-..... + . ...-..|-+++|+|+..+ .+..+....... .++ .-+++||.|-.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~ 253 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGD 253 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCc
Confidence 3578999999995332211 1 1 112356778999998653 222333333222 233 45678999963
No 422
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.85 E-value=0.0076 Score=64.26 Aligned_cols=150 Identities=14% Similarity=0.235 Sum_probs=79.3
Q ss_pred CEEEEEccCCCCcchHhhhhhccccc----------------ccccCceeEeee--------eEEEeecC--CeEEEEEe
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLV----------------AKEAGGITQHMG--------AFVVGMST--GASITFLD 243 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~----------------~~~~~g~T~d~~--------~~~~~~~~--g~~i~liD 243 (581)
+-++++|++-+|||||+.+|...-+. .....|-|.-.. ...+.+.+ ..++.++|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 56999999999999999998432110 011123332221 12222322 36788999
Q ss_pred CCCc--------ch-----------------hhHHHhhc----cc-ccc-EEEEEEeccCCCC------hhHHHHHHHHh
Q 008003 244 TPGH--------AA-----------------FSAMRKRG----AA-VTD-IVVLVVAADDGVM------PQTLEAIAHAN 286 (581)
Q Consensus 244 TpG~--------~~-----------------~~~~~~~~----~~-~aD-ivllVvDa~~g~~------~~~~~~i~~~~ 286 (581)
+-|. .+ |.....-+ +. .+- ++++--|.+-+.. ......+..++
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk 177 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK 177 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence 9882 11 11111111 11 122 3334345443221 22245567788
Q ss_pred hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCC--CChhhHHHHH
Q 008003 287 AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK--TGLDDLEVAL 347 (581)
Q Consensus 287 ~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg--~gI~eLl~~L 347 (581)
..++|+++++|=.+-.......+...+.+. -++++++++|..- +.|..+++.+
T Consensus 178 ~igKPFvillNs~~P~s~et~~L~~eL~ek--------Y~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 178 EIGKPFVILLNSTKPYSEETQELAEELEEK--------YDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HhCCCEEEEEeCCCCCCHHHHHHHHHHHHH--------hCCcEEEeehHHcCHHHHHHHHHHH
Confidence 899999999998875332222333333221 2468899888643 3444444444
No 423
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=96.84 E-value=0.0048 Score=52.66 Aligned_cols=69 Identities=17% Similarity=0.067 Sum_probs=52.1
Q ss_pred ceEEEEEEeecCC-CcEEEEEEeccEEeeCcEEEEcc-c----------cceE---EEEEcccCCcccccCCCCcEEEec
Q 008003 365 QAYVVEARLDKGR-GPLTTAIVKAGTLVCGQHVVVGH-E----------WGRI---RAIRDMVGKSTDKARPAMPVEIEG 429 (581)
Q Consensus 365 ~~~V~e~~~~~~~-G~v~~~~V~~GtLk~gd~i~~g~-~----------~~kV---k~i~~~~g~~v~~a~~~~~v~i~g 429 (581)
.++|+....++.. |.++.++|.+|+|+.||.|.+.. . ..+| ..+.+....++.++.+|+.+.+.|
T Consensus 2 ~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~g 81 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIKG 81 (94)
T ss_pred EEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEEC
Confidence 3567777777766 66899999999999999997621 1 1344 444555667799999999999999
Q ss_pred cCCC
Q 008003 430 LKGL 433 (581)
Q Consensus 430 l~~~ 433 (581)
+++.
T Consensus 82 l~~~ 85 (94)
T cd04090 82 IDSS 85 (94)
T ss_pred cchh
Confidence 8764
No 424
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.041 Score=51.43 Aligned_cols=137 Identities=15% Similarity=0.224 Sum_probs=72.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc----cccccccCceeEeeeeEEEeecCC--eEEEEEeCC-C-------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT----SLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTP-G------------- 246 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~----~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTp-G------------- 246 (581)
+...+|.|.|+||+|||||+..+... .+.+. +..|..+. - +| .-|.++|+. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg--Gf~t~EVR-----~-gGkR~GF~Ivdl~tg~~~~la~~~~~~~ 74 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG--GFITPEVR-----E-GGKRIGFKIVDLATGEEGILARVGFSRP 74 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceee--eEEeeeee-----c-CCeEeeeEEEEccCCceEEEEEcCCCCc
Confidence 34679999999999999999887542 12111 11121111 1 11 123344443 2
Q ss_pred --------cchhh----HHHhhccccccEEEEEEeccCCC---ChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHh
Q 008003 247 --------HAAFS----AMRKRGAAVTDIVVLVVAADDGV---MPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKN 311 (581)
Q Consensus 247 --------~~~~~----~~~~~~~~~aDivllVvDa~~g~---~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~ 311 (581)
.+.+. ....+++..||++++ |---+. .....+.+......+.|+|.++.+-+.. .+.+
T Consensus 75 rvGkY~V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~-----P~v~ 147 (179)
T COG1618 75 RVGKYGVNVEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH-----PLVQ 147 (179)
T ss_pred ccceEEeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCC-----hHHH
Confidence 01111 223456667888764 432222 2333455666667889999999887652 1222
Q ss_pred hhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 312 QLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 312 ~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
.+...+ .+ ++. .|-+|-+.+++.|...
T Consensus 148 ~ik~~~--------~v-~v~---lt~~NR~~i~~~Il~~ 174 (179)
T COG1618 148 RIKKLG--------GV-YVF---LTPENRNRILNEILSV 174 (179)
T ss_pred HhhhcC--------CE-EEE---EccchhhHHHHHHHHH
Confidence 222221 11 222 5666666777777654
No 425
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.84 E-value=0.0087 Score=48.02 Aligned_cols=75 Identities=31% Similarity=0.384 Sum_probs=56.8
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--c--cceEEEEEcccCCcccccCCCCcEEEeccCC-CCCCCCe
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--E--WGRIRAIRDMVGKSTDKARPAMPVEIEGLKG-LPMAGDD 439 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~--~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~-~~~~Gd~ 439 (581)
.+.|.+++.+++.|.++++++.+|+|++|+.+.+.+ . ..+|+.+... ...+.++.+|+.+.+..... .-..|+.
T Consensus 2 ~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~-~~~~~~~~aG~~~~~~~~~~~~~~~g~~ 80 (83)
T cd01342 2 RALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRF-KGEVDEAVAGDIVGIVLKDKDDIKIGDT 80 (83)
T ss_pred eeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEec-CceeceecCCCEEEEEEccccccCCCCE
Confidence 456788888888899999999999999999999855 2 3567778654 37788899999988866543 1135555
Q ss_pred E
Q 008003 440 I 440 (581)
Q Consensus 440 ~ 440 (581)
+
T Consensus 81 l 81 (83)
T cd01342 81 L 81 (83)
T ss_pred e
Confidence 4
No 426
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.0023 Score=76.47 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhccccc-------ccccCceeEeeeeEEEeecCCeEEEEEeCCC----cc----
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLV-------AKEAGGITQHMGAFVVGMSTGASITFLDTPG----HA---- 248 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~-------~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG----~~---- 248 (581)
..+..-|=-.|+|+||+||||++..--.+... ....+| |+++. +.-+..-.+|||+| +.
T Consensus 120 r~lyeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cd-----wwf~deaVlIDtaGry~~q~s~~~ 193 (1188)
T COG3523 120 RYLYELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCD-----WWFTDEAVLIDTAGRYITQDSADE 193 (1188)
T ss_pred chhhcCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccC-----cccccceEEEcCCcceecccCcch
Confidence 34445677889999999999998765332111 111222 44432 22345788999999 21
Q ss_pred hhhHHH---------hhccccccEEEEEEeccCCC--ChhHH-HHHH----------HHhhcCCCEEEEEeCCCCCC
Q 008003 249 AFSAMR---------KRGAAVTDIVVLVVAADDGV--MPQTL-EAIA----------HANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 249 ~~~~~~---------~~~~~~aDivllVvDa~~g~--~~~~~-~~i~----------~~~~~~~piIvViNK~Dl~~ 303 (581)
.-...+ .+..+-.|+||+.+|+.+-. .++.. .+.. .......|+.+++||+|+..
T Consensus 194 ~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 194 VDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred hhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 111111 24456779999999998722 22222 1111 11234689999999999964
No 427
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.79 E-value=0.012 Score=49.11 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=57.8
Q ss_pred eEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEc--c---ccceEEEEEcccCCcccccCCCCcEEEe--ccCCCCCCCC
Q 008003 366 AYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVG--H---EWGRIRAIRDMVGKSTDKARPAMPVEIE--GLKGLPMAGD 438 (581)
Q Consensus 366 ~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g--~---~~~kVk~i~~~~g~~v~~a~~~~~v~i~--gl~~~~~~Gd 438 (581)
+.|.+++...+.|.++.++|.+|++++|+.+.+- + ..++|++|.. +.+.++++.+|+.+.|. ++++. ..||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~-~~~~v~~a~~G~ecgi~l~~~~d~-~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKR-FKDDVKEVKKGYECGITLENFNDI-KVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEE-cCcccCEECCCCEEEEEEeCcccC-CCCC
Confidence 4566777666778999999999999999999984 3 4578999984 68899999999998663 55544 3577
Q ss_pred eE
Q 008003 439 DI 440 (581)
Q Consensus 439 ~~ 440 (581)
.+
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 65
No 428
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.78 E-value=0.0073 Score=65.79 Aligned_cols=115 Identities=22% Similarity=0.142 Sum_probs=60.4
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccc--cc-cccCceeEeee------------------eEEEee----------c
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL--VA-KEAGGITQHMG------------------AFVVGM----------S 234 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~--~~-~~~~g~T~d~~------------------~~~~~~----------~ 234 (581)
...+..++++|++|+||||++..|...-. .. ....-++.|.. ...... .
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~ 297 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL 297 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh
Confidence 34467899999999999999887743211 00 00111111110 000000 0
Q ss_pred CCeEEEEEeCCCcchhhH----HHhhccc---cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 235 TGASITFLDTPGHAAFSA----MRKRGAA---VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~----~~~~~~~---~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
.++.+.|+||||...... .....+. ..+-+++|++++.+. ....+.+......+. -=+++||+|-.
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 357899999999643321 1112222 234678888886532 122233344433332 35789999984
No 429
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=96.76 E-value=0.0058 Score=52.00 Aligned_cols=74 Identities=24% Similarity=0.219 Sum_probs=55.0
Q ss_pred eEEEEEEeec-CCCcEEEEEEeccEEeeCcEEEEcc---------c--cceEEE---EEcccCCcccccCCCCcEEEecc
Q 008003 366 AYVVEARLDK-GRGPLTTAIVKAGTLVCGQHVVVGH---------E--WGRIRA---IRDMVGKSTDKARPAMPVEIEGL 430 (581)
Q Consensus 366 ~~V~e~~~~~-~~G~v~~~~V~~GtLk~gd~i~~g~---------~--~~kVk~---i~~~~g~~v~~a~~~~~v~i~gl 430 (581)
++++....++ ..|.++.++|.+|+|+.|+.+.+.. . ..+|.. +.+....++.++.+|+.+.|.|+
T Consensus 3 ~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~ 82 (93)
T cd03700 3 MYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIVGL 82 (93)
T ss_pred EEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEECC
Confidence 4566666677 7899999999999999999997633 1 133333 44555567899999999999998
Q ss_pred CCCCCCCCeE
Q 008003 431 KGLPMAGDDI 440 (581)
Q Consensus 431 ~~~~~~Gd~~ 440 (581)
.++ ..|++.
T Consensus 83 ~~~-~~g~~~ 91 (93)
T cd03700 83 DQL-KSGTTA 91 (93)
T ss_pred ccC-ceEeEe
Confidence 764 466553
No 430
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.012 Score=63.46 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=59.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc-------cc--ccc---------------cCceeEeeeeEEE----e-----ec
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS-------LV--AKE---------------AGGITQHMGAFVV----G-----MS 234 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~-------~~--~~~---------------~~g~T~d~~~~~~----~-----~~ 234 (581)
++..++++|++|+||||++..|.... +. ..+ ..+.. .... . ..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp----~~~~~~~~~l~~~l~~ 297 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMP----FYPVKDIKKFKETLAR 297 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCC----eeehHHHHHHHHHHHh
Confidence 45679999999999999999986421 10 000 01110 0000 0 01
Q ss_pred CCeEEEEEeCCCcchhhH----HHhhcc-----ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 235 TGASITFLDTPGHAAFSA----MRKRGA-----AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~----~~~~~~-----~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
.++.+.|+||||...... .+...+ ....-.+||+|++.+.. +..+.+......+. -=+++||.|-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~~-~glIlTKLDEt 372 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLNY-RRILLTKLDEA 372 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCCC-CEEEEEcccCC
Confidence 467899999999643211 111111 12346889999986431 22333333332232 45678999974
No 431
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.73 E-value=0.0034 Score=59.84 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=32.5
Q ss_pred cEEEEEEeccCCCChhHHHHHHH--HhhcCCCEEEEEeCCCCCC
Q 008003 262 DIVVLVVAADDGVMPQTLEAIAH--ANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 262 DivllVvDa~~g~~~~~~~~i~~--~~~~~~piIvViNK~Dl~~ 303 (581)
|++++|+|+..+......+.... +...+.|+|+|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 89999999998766555555554 4445789999999999963
No 432
>PRK13695 putative NTPase; Provisional
Probab=96.66 E-value=0.0069 Score=57.53 Aligned_cols=76 Identities=13% Similarity=0.252 Sum_probs=45.9
Q ss_pred hccccccEEEEEEe---ccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEE
Q 008003 256 RGAAVTDIVVLVVA---ADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 256 ~~~~~aDivllVvD---a~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
..+..+|+ +++| ..+....++.+.+..+...+.|+|++.||.... .....+... .+..++.+
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~~-----~~~~~i~~~--------~~~~i~~~ 156 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSVH-----PFVQEIKSR--------PGGRVYEL 156 (174)
T ss_pred hccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhhH-----HHHHHHhcc--------CCcEEEEE
Confidence 44567777 5778 444555666777777777889999999986431 111111111 12345555
Q ss_pred eccCCCChhhHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLL 349 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~ 349 (581)
+.+|=+++.+.+..
T Consensus 157 ---~~~~r~~~~~~~~~ 170 (174)
T PRK13695 157 ---TPENRDSLPFEILN 170 (174)
T ss_pred ---cchhhhhHHHHHHH
Confidence 55666777777654
No 433
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.0053 Score=65.27 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
..++..++++|+.|+||||++..|..
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999999998853
No 434
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.0077 Score=64.69 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=60.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc-----ccccCceeEe------------------eeeEEEee----------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-----AKEAGGITQH------------------MGAFVVGM---------- 233 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~-----~~~~~g~T~d------------------~~~~~~~~---------- 233 (581)
.++..|+++|++|+||||.+..|...-.. .....-+|.| +.......
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 34678999999999999999887531100 0000001111 00000000
Q ss_pred cCCeEEEEEeCCCcchhhHH----Hhhccc--ccc-EEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 234 STGASITFLDTPGHAAFSAM----RKRGAA--VTD-IVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 234 ~~g~~i~liDTpG~~~~~~~----~~~~~~--~aD-ivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
..++.+.|+||||......+ ....+. ..+ -.+||+|++.+.. ...+.+......+ +-=+++||.|-.
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~-~~~~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS-DVKEIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH-HHHHHHHHhcCCC-CCEEEEEeccCC
Confidence 04678999999995432211 112222 123 5889999987522 2223333332222 345688999974
No 435
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.61 E-value=0.00074 Score=70.54 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=43.6
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
.+..+.|+++|-||+||||++|.|+...+ .+.+++|-|.=.....+ -..+.|||+||.
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL----mkrIfLIDcPGv 362 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL----MKRIFLIDCPGV 362 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH----HhceeEecCCCc
Confidence 35678999999999999999999998775 45677776642222211 247899999994
No 436
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.60 E-value=0.0059 Score=63.27 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|.++|-.|+||||-+..|..
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHH
Confidence 4578999999999999999988843
No 437
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.52 E-value=0.0055 Score=66.64 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=38.0
Q ss_pred CCeEEEEEeCCCcchhhHHHh------hccccccEEEEEEeccCCCChhHHHHHHHHh-hcCCCEEEEEeCCCCC
Q 008003 235 TGASITFLDTPGHAAFSAMRK------RGAAVTDIVVLVVAADDGVMPQTLEAIAHAN-AANVPIVVAINKCDKP 302 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~------~~~~~aDivllVvDa~~g~~~~~~~~i~~~~-~~~~piIvViNK~Dl~ 302 (581)
.++.+.|+||||......... ...-..|-++||+|+..+ .+..+...... ..++ .=+++||.|-.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-TGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-CEEEEeCccCc
Confidence 456799999999533221111 123357889999998754 23333333332 1222 45679999963
No 438
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.49 E-value=0.0046 Score=68.01 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=22.5
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
..++..++++|+.|+||||++..|..
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHH
Confidence 34577999999999999999999864
No 439
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.42 E-value=0.011 Score=56.19 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=49.8
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCC
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~ 303 (581)
+.+.+.++|||+... ......+..+|.+++++..+..........+..+...+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCc
Confidence 467899999997532 2334456789999999988865444555666666777889999999999754
No 440
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.42 E-value=0.019 Score=60.89 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=21.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++-|..+|.|-.|+|||||+|+|..
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~ 26 (341)
T TIGR02475 2 AKIPVTIVTGFLGAGKTTLIRHLLQ 26 (341)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHh
Confidence 3457789999999999999999975
No 441
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.39 E-value=0.019 Score=47.44 Aligned_cols=77 Identities=27% Similarity=0.394 Sum_probs=55.0
Q ss_pred CCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccceEEEEEcccCCcccccCCCCcEEE--eccCCCCCCCCe
Q 008003 362 GPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEI--EGLKGLPMAGDD 439 (581)
Q Consensus 362 ~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~i--~gl~~~~~~Gd~ 439 (581)
+|....|+..+....+. ++.|.|..|++++|..| -|..-|+|++|.. +++++++|.+|+.|.| .|...+ ..||.
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l-~G~~iG~I~sIe~-~~k~v~~A~~G~eVai~Ieg~~~i-~eGDi 78 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL-DGRKIGRIKSIED-NGKNVDEAKKGDEVAISIEGPTQI-KEGDI 78 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE-CSSCEEEEEEEEE-TTEEESEEETT-EEEEEEET--TB--TT-E
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc-CCEEEEEEEEeEE-CCcCccccCCCCEEEEEEeCCccC-CCCCE
Confidence 45566677777777777 77779999999999999 6667899999985 7899999999998855 354422 46777
Q ss_pred EEE
Q 008003 440 IIV 442 (581)
Q Consensus 440 ~~~ 442 (581)
+.+
T Consensus 79 LyV 81 (81)
T PF14578_consen 79 LYV 81 (81)
T ss_dssp EEE
T ss_pred EeC
Confidence 653
No 442
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.39 E-value=0.0066 Score=63.77 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=61.6
Q ss_pred eeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCC-----------ChhHHHHHHHHhh---
Q 008003 222 ITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-----------MPQTLEAIAHANA--- 287 (581)
Q Consensus 222 ~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-----------~~~~~~~i~~~~~--- 287 (581)
.|..+....+.+ .+.++.++|.+|++.-..-|...+.+++++|+|++.++-. +.++...+..+..
T Consensus 181 ~T~GI~e~~F~~-k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 181 PTTGIVEVEFTI-KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred CcCCeeEEEEEe-CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 455667777777 7899999999999998889999999999999999988611 1223334444333
Q ss_pred -cCCCEEEEEeCCCCC
Q 008003 288 -ANVPIVVAINKCDKP 302 (581)
Q Consensus 288 -~~~piIvViNK~Dl~ 302 (581)
.+.++|+++||.||.
T Consensus 260 F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLF 275 (354)
T ss_pred cccCcEEEEeecHHHH
Confidence 357899999999994
No 443
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.38 E-value=0.0044 Score=59.26 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=58.0
Q ss_pred CEEEEEccCCCCcchHhhhhhc-----cc--ccccccCceeEe--------eeeEEEe--------------------ec
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQ-----TS--LVAKEAGGITQH--------MGAFVVG--------------------MS 234 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~-----~~--~~~~~~~g~T~d--------~~~~~~~--------------------~~ 234 (581)
|.+.|.|-.|+|||||+++|.. .+ ++..+.+.+..| .....+. ..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 5688999999999999999983 11 122222211000 0011111 00
Q ss_pred C--CeEEEEEeCCCcchhhHHH--h---hccccccEEEEEEeccCCCChhH--HHHHHHHhhcCCCEEEEEeCCCCCC
Q 008003 235 T--GASITFLDTPGHAAFSAMR--K---RGAAVTDIVVLVVAADDGVMPQT--LEAIAHANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 235 ~--g~~i~liDTpG~~~~~~~~--~---~~~~~aDivllVvDa~~g~~~~~--~~~i~~~~~~~~piIvViNK~Dl~~ 303 (581)
. .....|+.|.|..+..... . ...-..+.++.|+|+..-..... .....++.. -=++++||+|+.+
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---ADVIVLNKIDLVS 155 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----SEEEEE-GGGHH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh---cCEEEEeccccCC
Confidence 2 3578889999965544441 1 11234588999999965211111 112233322 2368999999964
No 444
>PRK01889 GTPase RsgA; Reviewed
Probab=96.32 E-value=0.0035 Score=66.74 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.6
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+..+.+++++|.+|+|||||+|.|.+.
T Consensus 192 L~~g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 192 LSGGKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred hhcCCEEEEECCCCccHHHHHHHHHHh
Confidence 345679999999999999999999864
No 445
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.31 E-value=0.024 Score=58.35 Aligned_cols=87 Identities=29% Similarity=0.264 Sum_probs=56.6
Q ss_pred ccccccEEEEEEeccCCCCh-hH-HHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEec
Q 008003 257 GAAVTDIVVLVVAADDGVMP-QT-LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~-~~-~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSA 334 (581)
-+.+.|-+++|+.+.++... .- ...+-.+...++..++++||+||.+.........+ .....+ .++++.+|+
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~----~~y~~~--gy~v~~~s~ 149 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELL----REYEDI--GYPVLFVSA 149 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHH----HHHHhC--CeeEEEecC
Confidence 34457778888877765432 22 23445556678888889999999754332211111 111222 358999999
Q ss_pred cCCCChhhHHHHHHH
Q 008003 335 VKKTGLDDLEVALLL 349 (581)
Q Consensus 335 ktg~gI~eLl~~L~~ 349 (581)
+++.|+++|.+.+..
T Consensus 150 ~~~~~~~~l~~~l~~ 164 (301)
T COG1162 150 KNGDGLEELAELLAG 164 (301)
T ss_pred cCcccHHHHHHHhcC
Confidence 999999999998863
No 446
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.30 E-value=0.021 Score=58.44 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc------c--cccc-c--------C--ceeEeeeeEEEe-----------ec--
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS------L--VAKE-A--------G--GITQHMGAFVVG-----------MS-- 234 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~------~--~~~~-~--------~--g~T~d~~~~~~~-----------~~-- 234 (581)
.++.+++++|++|+|||||+..|...- . .... . . .-..++...... ..
T Consensus 73 ~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 366899999999999999998874321 0 0000 0 0 000011101100 00
Q ss_pred CCeEEEEEeCCCcchhhHH----Hhh--ccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCC
Q 008003 235 TGASITFLDTPGHAAFSAM----RKR--GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~----~~~--~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~ 303 (581)
.++.+.|+||||....... +.. .....|-++||+|++... .+..+.+......++ -=+++||.|-..
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~~-~~~I~TKlDet~ 225 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDETA 225 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCCC-CEEEEEeecCCC
Confidence 2578999999995432211 111 123457789999987421 222334444333222 456789999853
No 447
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.0048 Score=61.88 Aligned_cols=114 Identities=18% Similarity=0.297 Sum_probs=67.9
Q ss_pred CCEEEEEccCCCCcchHhhhhhccccccccc----CceeEeeeeEEEeecCC--eEEEEEeCCCcch-------------
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEA----GGITQHMGAFVVGMSTG--ASITFLDTPGHAA------------- 249 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~----~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~------------- 249 (581)
.++|..+|.+|.|||||++.|.+..+...+. +++......+.+.- .+ .+++++||.|.-+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqE-snvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQE-SNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhh-cCeeEEEEEEeecccccccCcccccchHHH
Confidence 3689999999999999999999987754433 33333333333321 22 4789999999321
Q ss_pred -----hhHHHh------h---cc--ccccEEEEEEeccC-CCChhHHHHHHHHhhcCCCEEEEEeCCCCCCC
Q 008003 250 -----FSAMRK------R---GA--AVTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIVVAINKCDKPAA 304 (581)
Q Consensus 250 -----~~~~~~------~---~~--~~aDivllVvDa~~-g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~ 304 (581)
|..... + .+ ...+++++.+..+. +...-++-.++.+. .++.+|-++-|.|....
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHHhhhhhH
Confidence 111000 1 12 34577888887653 23222333333332 45678889999998643
No 448
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.21 E-value=0.0079 Score=65.41 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=94.8
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVv 268 (581)
..+++|+|...+|||+|+.+++...+...+.+--.+--.+..+.. ..+.+.+.|-+|+.+ ..+....|++|+||
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~g-qs~lLlirdeg~~~~-----aQft~wvdavIfvf 103 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDG-QSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF 103 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeec-cceEeeeecccCCch-----hhhhhhccceEEEE
Confidence 368999999999999999998877665444332222222333322 446677778888533 23445689999999
Q ss_pred eccCCCChhHHHHHHHHh-----hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 269 AADDGVMPQTLEAIAHAN-----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 269 Da~~g~~~~~~~~i~~~~-----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
...+....+....+..-. ...+|+++++++. .......++.... .+..+........+++.+|.+|.+++..
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd-~iS~~~~rv~~da--~~r~l~~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQD-HISAKRPRVITDD--RARQLSAQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcc-hhhcccccccchH--HHHHHHHhcCccceeecchhhhhhHHHH
Confidence 988877777666553321 2356777777763 3222221111111 1111111223457899999999999998
Q ss_pred HHHHHHHHH
Q 008003 344 EVALLLQAE 352 (581)
Q Consensus 344 l~~L~~~~~ 352 (581)
|..+.....
T Consensus 181 f~~~~~k~i 189 (749)
T KOG0705|consen 181 FQEVAQKIV 189 (749)
T ss_pred HHHHHHHHH
Confidence 887765443
No 449
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.13 E-value=0.026 Score=53.18 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=44.3
Q ss_pred EEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCC
Q 008003 238 SITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPA 303 (581)
Q Consensus 238 ~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~ 303 (581)
.+.++|||+.... .....+..+|.+|++++.+..........+..+...+.+ ..+++|++|...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 7999999985433 233456789999999988765444444555555554544 678999998743
No 450
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.08 E-value=0.029 Score=49.08 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=53.5
Q ss_pred cCCCcceEEEEEEeec--------CCCcEEEEEEeccEEeeCcEEEEc--------------cccceEEEEEcccCCccc
Q 008003 360 VDGPAQAYVVEARLDK--------GRGPLTTAIVKAGTLVCGQHVVVG--------------HEWGRIRAIRDMVGKSTD 417 (581)
Q Consensus 360 ~~~~~~~~V~e~~~~~--------~~G~v~~~~V~~GtLk~gd~i~~g--------------~~~~kVk~i~~~~g~~v~ 417 (581)
.+.|+.++|.++|... .+|.++.+.+.+|.|+.||.|.+- +...+|.+|. ..++.++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~-~~~~~l~ 80 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLK-AENNDLQ 80 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEE-ecCcccc
Confidence 4567888898888776 789999999999999999999662 1133566665 4778899
Q ss_pred ccCCCCcEEE
Q 008003 418 KARPAMPVEI 427 (581)
Q Consensus 418 ~a~~~~~v~i 427 (581)
+|.||..+-|
T Consensus 81 ~a~pGgliGv 90 (113)
T cd03688 81 EAVPGGLIGV 90 (113)
T ss_pred EEeCCCeEEE
Confidence 9999988877
No 451
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.028 Score=64.92 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+++|+.|+||||++..|..
T Consensus 183 ~~g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 183 AQGGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHh
Confidence 3467899999999999999998864
No 452
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.97 E-value=0.019 Score=52.59 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=59.8
Q ss_pred EEEccCCCCcchHhhhhhcccccccc-cCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEecc
Q 008003 193 TVMGHVDHGKTSLLDALRQTSLVAKE-AGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAAD 271 (581)
Q Consensus 193 ~IvG~~n~GKSSLln~L~~~~~~~~~-~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~ 271 (581)
..-|..|+||||+--.+...-...+. .--+..|..... -.+.+.++|||+.. .......+..+|.++++++.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~----~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN----LDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC----CCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 34567899999997766432111000 000011110000 11689999999853 333345678899999999887
Q ss_pred CCCChhHHHHHHHHhh--cCCCEEEEEeCCCC
Q 008003 272 DGVMPQTLEAIAHANA--ANVPIVVAINKCDK 301 (581)
Q Consensus 272 ~g~~~~~~~~i~~~~~--~~~piIvViNK~Dl 301 (581)
......+...++.+.. ...++.+++|+++.
T Consensus 78 ~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 PTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 5433333444444432 23468899999974
No 453
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.96 E-value=0.023 Score=48.84 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=45.1
Q ss_pred EEEEc-cCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEec
Q 008003 192 VTVMG-HVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (581)
Q Consensus 192 V~IvG-~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa 270 (581)
|++.| ..|+||||+.-.|...-... .. ....+..+..+.+.++|||+.... .....+..+|.++++++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-~~-------~vl~~d~d~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-GK-------RVLLIDLDPQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-CC-------cEEEEeCCCCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 56667 67999999987775432211 11 111122223378999999995432 233566789999999988
Q ss_pred cC
Q 008003 271 DD 272 (581)
Q Consensus 271 ~~ 272 (581)
+.
T Consensus 72 ~~ 73 (104)
T cd02042 72 SP 73 (104)
T ss_pred CH
Confidence 65
No 454
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.017 Score=60.76 Aligned_cols=65 Identities=28% Similarity=0.335 Sum_probs=38.0
Q ss_pred CCeEEEEEeCCCc-c----hhhHHHh-hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCC
Q 008003 235 TGASITFLDTPGH-A----AFSAMRK-RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKP 302 (581)
Q Consensus 235 ~g~~i~liDTpG~-~----~~~~~~~-~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~ 302 (581)
+++.+.++||.|. . -|..+.. ..+-..|-+|+|+|++-|... +......+..+. --+++||+|-.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa---e~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA---EAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhH---HHHHHHHHHhhccceEEEEecccC
Confidence 5688999999992 2 2333332 233457999999999976322 111111111111 24578999963
No 455
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.89 E-value=0.024 Score=47.04 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=47.1
Q ss_pred EEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHH-HhhccccccEEEEEEec
Q 008003 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM-RKRGAAVTDIVVLVVAA 270 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~-~~~~~~~aDivllVvDa 270 (581)
+++.|..|+||||+...|...-.... . ..... + .+.++|+|+....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g----~------~v~~~-~--d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG----K------RVLLI-D--DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC----C------eEEEE-C--CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 67889999999999998865432211 0 11111 1 7899999995443321 13455688999999988
Q ss_pred cCCCCh
Q 008003 271 DDGVMP 276 (581)
Q Consensus 271 ~~g~~~ 276 (581)
+.....
T Consensus 69 ~~~~~~ 74 (99)
T cd01983 69 EALAVL 74 (99)
T ss_pred chhhHH
Confidence 764433
No 456
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.0046 Score=59.03 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=42.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHH
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR 254 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~ 254 (581)
+|.-++|.|++|+|||||+.+|....-..-....|||......+ +|..+.|++ .++|..+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv---~G~dY~Fvs---~~EF~~~i 63 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEV---DGVDYFFVT---EEEFEELI 63 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCc---CCceeEeCC---HHHHHHHH
Confidence 67889999999999999999998765222233446666655544 677777776 34454444
No 457
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.85 E-value=0.019 Score=56.28 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++..|+|+|++|+|||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 346778999999999999999999754
No 458
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.74 E-value=0.013 Score=63.27 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=57.1
Q ss_pred eEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCC--------C---ChhHHHHHHHHhh----
Q 008003 223 TQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG--------V---MPQTLEAIAHANA---- 287 (581)
Q Consensus 223 T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g--------~---~~~~~~~i~~~~~---- 287 (581)
|..+....+.+.++..+.++|+.|++.-..-|...+...+++|+|++.++- . ..+.+..+..+..
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 444445555543688999999999999889999999999999999998751 1 1233444444332
Q ss_pred cCCCEEEEEeCCCCC
Q 008003 288 ANVPIVVAINKCDKP 302 (581)
Q Consensus 288 ~~~piIvViNK~Dl~ 302 (581)
.+.|+|+++||+|+.
T Consensus 302 ~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 302 KNTPIILFLNKIDLF 316 (389)
T ss_dssp TTSEEEEEEE-HHHH
T ss_pred ccCceEEeeecHHHH
Confidence 368999999999983
No 459
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.65 E-value=0.0065 Score=54.24 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=19.6
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL 214 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~ 214 (581)
+...+.|.|++|+|||++++++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 445689999999999999999987643
No 460
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.59 E-value=0.036 Score=48.25 Aligned_cols=97 Identities=14% Similarity=0.083 Sum_probs=55.1
Q ss_pred EccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCC
Q 008003 195 MGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV 274 (581)
Q Consensus 195 vG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~ 274 (581)
-+..|+||||+.-.|...-.... |... .........+..+.++|||+.... .....+..+|.++++++.+...
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~---~~~~--~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s 78 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEA---GRRV--LLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPS 78 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcC---CCcE--EEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHH
Confidence 34589999998877744322110 1111 111111112347999999985432 3344667899999999887643
Q ss_pred ChhHHHHHHHHhhcC----CCEEEEEeC
Q 008003 275 MPQTLEAIAHANAAN----VPIVVAINK 298 (581)
Q Consensus 275 ~~~~~~~i~~~~~~~----~piIvViNK 298 (581)
.......+..+...+ ..+.+|+|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 79 IRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 334444444444333 346778875
No 461
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.56 E-value=0.023 Score=58.63 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.4
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
..++..++|+|++|+||||++..|..
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34677999999999999999998864
No 462
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.56 E-value=0.0056 Score=69.88 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=72.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEE------------------------------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFV------------------------------------ 230 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~------------------------------------ 230 (581)
-..|.|+++|...+||||.++.+.+..+.....+..|+......
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 35689999999999999999999885544322222222111100
Q ss_pred -------------------EeecCCeEEEEEeCCCc-------------chhhHHHhhccccccEEEEEEeccCC--CCh
Q 008003 231 -------------------VGMSTGASITFLDTPGH-------------AAFSAMRKRGAAVTDIVVLVVAADDG--VMP 276 (581)
Q Consensus 231 -------------------~~~~~g~~i~liDTpG~-------------~~~~~~~~~~~~~aDivllVvDa~~g--~~~ 276 (581)
+...+-..++++|.||. .....+...++...+.+++.+...+- ...
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats 186 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATS 186 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhcC
Confidence 00012235789999993 23455677888888888888876541 122
Q ss_pred hHHHHHHHHhhcCCCEEEEEeCCCCCCC
Q 008003 277 QTLEAIAHANAANVPIVVAINKCDKPAA 304 (581)
Q Consensus 277 ~~~~~i~~~~~~~~piIvViNK~Dl~~~ 304 (581)
.++.........+...|-|++|.|+.+.
T Consensus 187 ~alkiarevDp~g~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 187 PALVVAREVDPGGSRTLEVITKFDFMDK 214 (657)
T ss_pred HHHHHHHhhCCCccchhHHhhhHHhhhc
Confidence 3333333333345557778888887543
No 463
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.53 E-value=0.011 Score=46.43 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALR 210 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~ 210 (581)
.+...+|.|+.|+|||||++++.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44579999999999999999984
No 464
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.38 E-value=0.033 Score=52.83 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=32.9
Q ss_pred CEEEEEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeecCCeEEEEEeCCC
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPG 246 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG 246 (581)
..|+|+|++|+|||||++.|.+.... ....+.+|+....... ++..+.++++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~---~~~~~~~~~~~~ 56 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEV---DGVDYFFVSKEE 56 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCc---CCcEEEEecHHH
Confidence 46899999999999999999874321 1122234443332221 455666665433
No 465
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.058 Score=53.35 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=67.6
Q ss_pred CCEEEEEccCCCCcchHhhhhhccccc-----ccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHH---Hhhcccc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLV-----AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM---RKRGAAV 260 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~-----~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~---~~~~~~~ 260 (581)
.|+|.+||.--+||||+-.-..+.... ......+|++..... =..+.+||.||+-.+-.- ...-++.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~s-----finf~v~dfPGQ~~~Fd~s~D~e~iF~~ 101 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNS-----FINFQVWDFPGQMDFFDPSFDYEMIFRG 101 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhh-----hcceEEeecCCccccCCCccCHHHHHhc
Confidence 367999999999999987766543221 122233444432221 246889999997554321 2345678
Q ss_pred ccEEEEEEeccCCCChhHHHH-HHHHh----hcCCCEEEEEeCCCCCCC
Q 008003 261 TDIVVLVVAADDGVMPQTLEA-IAHAN----AANVPIVVAINKCDKPAA 304 (581)
Q Consensus 261 aDivllVvDa~~g~~~~~~~~-i~~~~----~~~~piIvViNK~Dl~~~ 304 (581)
+.+.++|+|+.+......... +...+ ..++.+=|.+.|.|-...
T Consensus 102 ~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 102 VGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred cCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 899999999976432221111 11111 235568899999998643
No 466
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.30 E-value=0.014 Score=53.47 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=32.7
Q ss_pred EEEEccCCCCcchHhhhhhcccc--cccccCceeEeeeeEEEeecCCeEEEEEeCC
Q 008003 192 VTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHMGAFVVGMSTGASITFLDTP 245 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~~~--~~~~~~g~T~d~~~~~~~~~~g~~i~liDTp 245 (581)
|+|+|++|+|||||++.|..... .....+.+|+...... . +|..+.++|..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~-~g~~~~~v~~~ 54 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--V-DGVDYHFVSKE 54 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--c-CCceeEEeCHH
Confidence 68999999999999999987521 1112333455433222 2 56777888643
No 467
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.20 E-value=0.015 Score=57.36 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=35.7
Q ss_pred eEEEEEeCCCcchh------hHHHhhccccccEEEEEEeccCC---CChhH-H----HHHHHHhhcCCCEEEEEeCCCCC
Q 008003 237 ASITFLDTPGHAAF------SAMRKRGAAVTDIVVLVVAADDG---VMPQT-L----EAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 237 ~~i~liDTpG~~~~------~~~~~~~~~~aDivllVvDa~~g---~~~~~-~----~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
..+.++|+||+-++ .....+.+..-|.-+.++...+. ..+.. + -.+.-......|-|=|+.|+|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 46889999996432 11222344445555555544331 11111 1 11222334577888899999985
No 468
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.17 E-value=0.035 Score=42.69 Aligned_cols=42 Identities=21% Similarity=0.483 Sum_probs=23.6
Q ss_pred ccccEEEEEEeccC--CCChhH-HHHHHHHhhc--CCCEEEEEeCCC
Q 008003 259 AVTDIVVLVVAADD--GVMPQT-LEAIAHANAA--NVPIVVAINKCD 300 (581)
Q Consensus 259 ~~aDivllVvDa~~--g~~~~~-~~~i~~~~~~--~~piIvViNK~D 300 (581)
.-.+++++++|.+. |...+. ...+..++.. ++|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 45789999999987 443222 3334444432 799999999998
No 469
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.09 E-value=0.015 Score=56.16 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEe
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLD 243 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liD 243 (581)
++.-|+|+|++|+|||||+++|..... .....+-||+....... +|..+.|++
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~---~G~dY~fvs 56 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE---EGKTYFFLT 56 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC---CCceeEeCC
Confidence 467799999999999999999987532 12223456665433332 455666653
No 470
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.02 E-value=0.071 Score=50.25 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=46.3
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCC
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDK 301 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl 301 (581)
.++.+.++|||+.-.-.......+..+|.+++|+..+..........+..+...+.+ .-+++|+.+-
T Consensus 66 ~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 468899999998532111111113578999999987765555666777777777777 4578999985
No 471
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.97 E-value=0.12 Score=49.30 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+.+.++|+|.+|+|||||+.+|...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 35678999999999999999999764
No 472
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.95 E-value=0.043 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=18.5
Q ss_pred EEEEEccCCCCcchHhhhhhcc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+|.|.|+||+|||||+..+...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 5889999999999999998653
No 473
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.93 E-value=0.015 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEccCCCCcchHhhhhhcc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+|+|.|.||+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999774
No 474
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.89 E-value=0.057 Score=57.93 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCcchhhH-----HH-hhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCC
Q 008003 235 TGASITFLDTPGHAAFSA-----MR-KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKP 302 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~-----~~-~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~ 302 (581)
.++.+.++||+|--.... +. ....-..|=++||+|+..|- +............+ .=|+++|+|-.
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ---dA~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ---DAVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch---HHHHHHHHHhhhcCCceEEEEcccCC
Confidence 356899999999332221 11 13456789999999998753 22221111222334 34678999964
No 475
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.74 E-value=0.087 Score=54.35 Aligned_cols=100 Identities=17% Similarity=0.293 Sum_probs=60.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch---h------------
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA---F------------ 250 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~---~------------ 250 (581)
..+.+.+.|+|++|.|||+++.++........+..+ ...++..+.+|.-.+ |
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 346788999999999999999999876543221110 224677777766221 1
Q ss_pred ---------hHHHhhccccccEEEEEEeccC----CCChhHHHH---HHHH-hhcCCCEEEEEeC
Q 008003 251 ---------SAMRKRGAAVTDIVVLVVAADD----GVMPQTLEA---IAHA-NAANVPIVVAINK 298 (581)
Q Consensus 251 ---------~~~~~~~~~~aDivllVvDa~~----g~~~~~~~~---i~~~-~~~~~piIvViNK 298 (581)
.......++...+=++|+|=-. |...+-.+. ++.+ +..++|+|.|+++
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 1112234566777889998543 333333333 3333 2357899998875
No 476
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.71 E-value=0.021 Score=54.38 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=23.9
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
.+.+-+|+|+|++|+|||||+|.+.+-.
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 3567789999999999999999997743
No 477
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.69 E-value=0.021 Score=57.00 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.4
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++=.|+|+|++|+|||||+|.+.+-
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345668999999999999999999874
No 478
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.68 E-value=0.021 Score=56.64 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=23.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
..++=.|+|+|++|+|||||+|.+.+-.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4567789999999999999999997643
No 479
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.64 E-value=0.11 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.9
Q ss_pred CCEEEEEccCCCCcchHhhhhhccc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
+.-|+++|++|+||+||.+.|....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998764
No 480
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.57 E-value=0.026 Score=50.97 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL 214 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~ 214 (581)
.++-.++|+|+.|+|||||++.|.+...
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred cCCCEEEEEccCCCccccceeeeccccc
Confidence 4567899999999999999999988643
No 481
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.52 E-value=0.074 Score=47.24 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL 214 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~ 214 (581)
.+..+.|.|++|+|||+|++.+.+.-.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 356799999999999999999987543
No 482
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.14 E-value=0.029 Score=54.93 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.6
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+++..|+|+|++|+|||||++.|.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999999999999763
No 483
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.02 E-value=0.066 Score=57.67 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=22.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+|.|..|+|||||++.|.+
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999854
No 484
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.00 E-value=0.033 Score=44.52 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEccCCCCcchHhhhhhcc
Q 008003 192 VTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~ 212 (581)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999765
No 485
>PRK08233 hypothetical protein; Provisional
Probab=93.99 E-value=0.036 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
++..|+|.|.+|+|||||.++|...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 4578999999999999999999764
No 486
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.91 E-value=0.037 Score=54.11 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=23.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++..|+|.|++|+|||||.+.|.+.
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999764
No 487
>COG1161 Predicted GTPases [General function prediction only]
Probab=93.89 E-value=0.14 Score=53.74 Aligned_cols=99 Identities=24% Similarity=0.230 Sum_probs=65.0
Q ss_pred EEeCCCcc-hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccc
Q 008003 241 FLDTPGHA-AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGL 318 (581)
Q Consensus 241 liDTpG~~-~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~ 318 (581)
+-+.|||. ++.......+...|+++.|+|+.++........-.... +.|.++|+||+||.+... ....+.+...
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~~~~~W~~~~~~~-- 89 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKEVTKKWKKYFKKE-- 89 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCHHHHHHHHHHHHhc--
Confidence 44558874 56667778899999999999999866554444333333 456699999999974322 1111111111
Q ss_pred hhhhcCCcceEEEEeccCCCChhhHHHHHHH
Q 008003 319 ELEDWGGKVQVVEVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 319 ~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~ 349 (581)
.....+.+|++++.+...+..++..
T Consensus 90 ------~~~~~~~v~~~~~~~~~~i~~~~~~ 114 (322)
T COG1161 90 ------EGIKPIFVSAKSRQGGKKIRKALEK 114 (322)
T ss_pred ------CCCccEEEEeecccCccchHHHHHH
Confidence 1345788999999988888765543
No 488
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.85 E-value=0.065 Score=57.84 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=64.2
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc----cccccc-------------c----------cCceeEeeeeEEE-------
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ----TSLVAK-------------E----------AGGITQHMGAFVV------- 231 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~----~~~~~~-------------~----------~~g~T~d~~~~~~------- 231 (581)
..+|..|+++|-.||||||=|-.+.. ..+.+- . ..|+-..+.+.-+
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~v 454 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGV 454 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHH
Confidence 34889999999999999998877632 221110 0 0111111100000
Q ss_pred -------eecCCeEEEEEeCCCcchhhH--HHh----hccccccEEEEEEeccCCCC--hhHHHHHHHHhhcCCC---EE
Q 008003 232 -------GMSTGASITFLDTPGHAAFSA--MRK----RGAAVTDIVVLVVAADDGVM--PQTLEAIAHANAANVP---IV 293 (581)
Q Consensus 232 -------~~~~g~~i~liDTpG~~~~~~--~~~----~~~~~aDivllVvDa~~g~~--~~~~~~i~~~~~~~~p---iI 293 (581)
...+|+.+.|+||+|...-.. |.. .-+...|.+++|=.+--|.. .|..+.-..+.....| =-
T Consensus 455 ak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~ 534 (587)
T KOG0781|consen 455 AKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDG 534 (587)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccce
Confidence 011578999999999433221 111 23467899999976654432 2222222222223334 34
Q ss_pred EEEeCCCCCC
Q 008003 294 VAINKCDKPA 303 (581)
Q Consensus 294 vViNK~Dl~~ 303 (581)
++++|+|..+
T Consensus 535 ~~ltk~dtv~ 544 (587)
T KOG0781|consen 535 ILLTKFDTVD 544 (587)
T ss_pred EEEEeccchh
Confidence 6899999864
No 489
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.84 E-value=0.043 Score=53.78 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.6
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|++|+|||||+.+|.+-
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 456789999999999999999998664
No 490
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.83 E-value=0.045 Score=48.12 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSL 214 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~ 214 (581)
+..+.|+|++|+||||++..|...-.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 56899999999999999999977543
No 491
>PRK14530 adenylate kinase; Provisional
Probab=93.82 E-value=0.04 Score=54.22 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+++|+|+|.||+||||+...|...
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999653
No 492
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.74 E-value=0.044 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.0
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhh
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALR 210 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~ 210 (581)
...++-.++|+|+.|+|||||++.+.
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35677899999999999999999885
No 493
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.70 E-value=0.04 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++ .++|+|+.|+|||||++.|.+-
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 347 8999999999999999999874
No 494
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.69 E-value=0.04 Score=50.67 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=20.8
Q ss_pred CEEEEEccCCCCcchHhhhhhccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
|.|+|+|+.|+|||||+..|.+.-
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999997753
No 495
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.65 E-value=0.031 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=17.7
Q ss_pred EEEEEccCCCCcchHhhhhhcc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~ 212 (581)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999765
No 496
>PRK07261 topology modulation protein; Provisional
Probab=93.62 E-value=0.041 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEEccCCCCcchHhhhhhcc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998653
No 497
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.59 E-value=0.045 Score=52.45 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=25.1
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
....+-.++|+|+.|+|||||++.|.+-.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34677899999999999999999998753
No 498
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.56 E-value=0.045 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++|+|++|+|||||+++|...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998664
No 499
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.56 E-value=0.2 Score=51.25 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=48.5
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeee-EEEeecCCeEEEEEeCCCcch----hhHHHhhccccccEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGA-FVVGMSTGASITFLDTPGHAA----FSAMRKRGAAVTDIV 264 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~-~~~~~~~g~~i~liDTpG~~~----~~~~~~~~~~~aDiv 264 (581)
|-|++.|.|++||||+.+.|...-.. .+....+.. ..+.+..+. +.|+..... +.....+.+..-+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~----~~~~v~~i~~~~~~~~~~~---y~~~~~Ek~~R~~l~s~v~r~ls~~~-- 72 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE----KGKEVVIISDDSLGIDRND---YADSKKEKEARGSLKSAVERALSKDT-- 72 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH----TT--EEEE-THHHH-TTSS---S--GGGHHHHHHHHHHHHHHHHTT-S--
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh----cCCEEEEEcccccccchhh---hhchhhhHHHHHHHHHHHHHhhccCe--
Confidence 45899999999999999999763111 000000000 000010111 223322111 1222334444433
Q ss_pred EEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCC
Q 008003 265 VLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDK 301 (581)
Q Consensus 265 llVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl 301 (581)
|+++|...-+...-.+.+..++..+.+..+|.-.+++
T Consensus 73 iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~ 109 (270)
T PF08433_consen 73 IVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPL 109 (270)
T ss_dssp EEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--H
T ss_pred EEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCH
Confidence 4467888766666678888888899998888888876
No 500
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.56 E-value=0.048 Score=53.50 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=24.5
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
..++-.++|+|+.|+|||||++.|.+-.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567889999999999999999998853
Done!