Query 008003
Match_columns 581
No_of_seqs 714 out of 4496
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 15:46:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zo1_I IF2, translation initia 100.0 7.3E-67 2.5E-71 570.4 7.1 382 187-573 2-386 (501)
2 3izy_P Translation initiation 100.0 7.2E-67 2.5E-71 574.9 5.4 386 187-573 2-425 (537)
3 1g7s_A Translation initiation 100.0 2.4E-54 8.4E-59 482.2 25.9 359 187-573 3-436 (594)
4 3gee_A MNME, tRNA modification 100.0 3.7E-47 1.3E-51 414.5 7.6 286 15-352 83-397 (476)
5 3geh_A MNME, tRNA modification 100.0 2.1E-45 7.2E-50 399.3 8.1 283 15-351 75-382 (462)
6 1xzp_A Probable tRNA modificat 100.0 5.8E-40 2E-44 358.1 8.2 282 15-350 95-402 (482)
7 3j2k_7 ERF3, eukaryotic polype 100.0 6.3E-31 2.1E-35 284.7 24.9 255 187-445 15-328 (439)
8 3p26_A Elongation factor 1 alp 100.0 6.7E-30 2.3E-34 280.0 23.0 256 188-445 32-363 (483)
9 2ywe_A GTP-binding protein LEP 100.0 3.8E-29 1.3E-33 278.4 28.7 337 188-573 5-375 (600)
10 1d2e_A Elongation factor TU (E 100.0 1E-29 3.4E-34 271.9 20.8 246 189-443 3-289 (397)
11 1wb1_A Translation elongation 100.0 2.9E-30 9.9E-35 282.4 16.5 250 187-441 17-281 (482)
12 3cb4_D GTP-binding protein LEP 100.0 1.2E-28 4E-33 275.0 29.2 338 188-573 3-373 (599)
13 2c78_A Elongation factor TU-A; 100.0 9.1E-30 3.1E-34 272.9 18.5 248 187-443 9-307 (405)
14 2elf_A Protein translation elo 100.0 4.3E-29 1.5E-33 264.3 22.3 236 191-442 23-275 (370)
15 3mca_A HBS1, elongation factor 100.0 3.9E-30 1.3E-34 287.7 14.8 253 187-445 175-490 (592)
16 3izq_1 HBS1P, elongation facto 100.0 2.1E-29 7E-34 282.7 20.6 257 187-445 165-497 (611)
17 1zun_B Sulfate adenylate trans 100.0 5.9E-29 2E-33 269.0 23.0 253 188-445 23-327 (434)
18 1r5b_A Eukaryotic peptide chai 100.0 1.6E-29 5.4E-34 275.8 17.1 253 188-444 42-356 (467)
19 3tr5_A RF-3, peptide chain rel 100.0 5.2E-29 1.8E-33 274.7 21.1 335 188-568 12-463 (528)
20 1jny_A EF-1-alpha, elongation 100.0 4.8E-29 1.6E-33 269.7 20.0 250 188-443 5-316 (435)
21 1f60_A Elongation factor EEF1A 100.0 4.4E-29 1.5E-33 271.6 19.2 255 188-444 6-328 (458)
22 1kk1_A EIF2gamma; initiation o 100.0 1.8E-28 6.2E-33 263.2 22.7 252 188-444 9-316 (410)
23 1s0u_A EIF-2-gamma, translatio 100.0 2.3E-28 8E-33 262.2 23.0 251 188-443 7-313 (408)
24 2rdo_7 EF-G, elongation factor 100.0 3E-27 1E-31 269.3 29.0 311 187-528 8-465 (704)
25 3vqt_A RF-3, peptide chain rel 100.0 5.9E-28 2E-32 267.6 22.5 295 188-513 30-440 (548)
26 3avx_A Elongation factor TS, e 100.0 6E-28 2E-32 280.2 21.7 249 187-443 294-580 (1289)
27 1dar_A EF-G, elongation factor 100.0 2.8E-27 9.5E-32 269.2 24.6 312 187-528 10-458 (691)
28 3sjy_A Translation initiation 100.0 3.2E-27 1.1E-31 253.0 22.3 252 187-445 6-309 (403)
29 1z9b_A Translation initiation 99.9 1.6E-29 5.6E-34 225.6 0.9 123 445-573 1-126 (135)
30 2h5e_A Peptide chain release f 99.9 9.2E-27 3.2E-31 257.0 22.5 295 188-514 12-423 (529)
31 2dy1_A Elongation factor G; tr 99.9 4E-26 1.4E-30 258.8 23.3 295 187-513 7-408 (665)
32 2xex_A Elongation factor G; GT 99.9 1.8E-25 6.1E-30 254.4 22.9 254 187-442 8-391 (693)
33 1ega_A Protein (GTP-binding pr 99.9 5.4E-27 1.8E-31 241.7 8.9 247 187-451 6-289 (301)
34 2lkc_A Translation initiation 99.9 7.4E-26 2.5E-30 212.2 14.3 171 185-356 4-174 (178)
35 4fn5_A EF-G 1, elongation fact 99.9 4.8E-25 1.6E-29 251.9 19.9 254 188-442 12-402 (709)
36 3iev_A GTP-binding protein ERA 99.9 3.5E-26 1.2E-30 236.3 7.4 249 187-449 8-296 (308)
37 3j25_A Tetracycline resistance 99.9 2E-26 7E-31 260.0 2.8 238 189-429 2-317 (638)
38 1wf3_A GTP-binding protein; GT 99.9 1E-25 3.6E-30 232.0 6.7 243 188-450 6-287 (301)
39 4dkx_A RAS-related protein RAB 99.9 5E-22 1.7E-26 194.8 13.9 156 187-351 11-174 (216)
40 2dyk_A GTP-binding protein; GT 99.9 1.1E-21 3.9E-26 180.3 14.1 150 190-350 2-159 (161)
41 4dhe_A Probable GTP-binding pr 99.9 8.4E-22 2.9E-26 192.1 13.3 163 187-351 27-209 (223)
42 1upt_A ARL1, ADP-ribosylation 99.9 2.7E-21 9.1E-26 179.6 15.9 159 185-351 3-167 (171)
43 4bas_A ADP-ribosylation factor 99.9 2.3E-21 8E-26 185.0 15.7 162 185-352 13-188 (199)
44 1n0u_A EF-2, elongation factor 99.9 9.7E-22 3.3E-26 228.0 15.5 246 188-433 18-462 (842)
45 3tkl_A RAS-related protein RAB 99.9 2E-21 6.7E-26 185.1 14.3 158 188-352 15-178 (196)
46 2bme_A RAB4A, RAS-related prot 99.9 4.6E-21 1.6E-25 181.0 16.0 155 187-351 8-171 (186)
47 1zj6_A ADP-ribosylation factor 99.9 3.8E-21 1.3E-25 182.5 15.3 157 187-351 14-176 (187)
48 2hjg_A GTP-binding protein ENG 99.9 1.2E-21 4E-26 211.9 12.8 161 187-352 173-348 (436)
49 2hxs_A RAB-26, RAS-related pro 99.9 1.1E-21 3.8E-26 183.7 10.7 155 188-351 5-171 (178)
50 2fu5_C RAS-related protein RAB 99.9 1.5E-21 5.1E-26 184.1 11.2 154 188-351 7-169 (183)
51 3tw8_B RAS-related protein RAB 99.9 1.3E-21 4.5E-26 183.2 10.8 155 188-352 8-170 (181)
52 1r8s_A ADP-ribosylation factor 99.9 6.9E-21 2.4E-25 175.8 15.5 153 190-350 1-159 (164)
53 1zd9_A ADP-ribosylation factor 99.9 5.1E-21 1.7E-25 182.1 14.7 159 185-350 18-182 (188)
54 3cph_A RAS-related protein SEC 99.9 2.2E-21 7.5E-26 187.4 12.2 158 184-351 15-180 (213)
55 1g16_A RAS-related protein SEC 99.9 1.6E-21 5.3E-26 180.8 10.7 154 189-351 3-163 (170)
56 2g6b_A RAS-related protein RAB 99.9 5.4E-21 1.9E-25 179.3 14.5 155 187-351 8-172 (180)
57 2hup_A RAS-related protein RAB 99.9 4E-21 1.4E-25 185.2 13.9 155 187-351 27-191 (201)
58 1wms_A RAB-9, RAB9, RAS-relate 99.9 8.3E-21 2.8E-25 177.5 15.6 155 188-351 6-172 (177)
59 3clv_A RAB5 protein, putative; 99.8 7.6E-21 2.6E-25 181.0 15.4 155 187-351 5-202 (208)
60 2gj8_A MNME, tRNA modification 99.8 1E-21 3.6E-26 184.8 9.1 150 188-351 3-164 (172)
61 1ky3_A GTP-binding protein YPT 99.8 2.4E-21 8.2E-26 181.6 11.2 161 187-351 6-176 (182)
62 1c1y_A RAS-related protein RAP 99.8 4.2E-21 1.4E-25 177.3 12.4 155 188-351 2-165 (167)
63 2ew1_A RAS-related protein RAB 99.8 6.6E-21 2.2E-25 184.3 14.1 154 188-351 25-187 (201)
64 2il1_A RAB12; G-protein, GDP, 99.8 2.3E-21 7.8E-26 185.3 10.7 160 187-351 24-188 (192)
65 1z08_A RAS-related protein RAB 99.8 3.8E-21 1.3E-25 178.4 11.9 155 188-351 5-167 (170)
66 2wji_A Ferrous iron transport 99.8 1.4E-21 4.9E-26 182.1 8.8 151 189-350 3-162 (165)
67 1ksh_A ARF-like protein 2; sma 99.8 1.2E-20 4.2E-25 178.4 15.3 157 187-351 16-178 (186)
68 2y8e_A RAB-protein 6, GH09086P 99.8 8.2E-21 2.8E-25 177.4 13.5 152 188-349 13-173 (179)
69 1z0f_A RAB14, member RAS oncog 99.8 1E-20 3.5E-25 176.8 14.1 154 188-350 14-175 (179)
70 1mky_A Probable GTP-binding pr 99.8 5.1E-21 1.8E-25 207.0 13.8 153 190-352 2-165 (439)
71 2h17_A ADP-ribosylation factor 99.8 9.7E-21 3.3E-25 178.8 14.0 157 185-349 17-179 (181)
72 2efe_B Small GTP-binding prote 99.8 7.6E-21 2.6E-25 178.4 13.1 155 187-350 10-172 (181)
73 2h57_A ADP-ribosylation factor 99.8 1.4E-20 4.8E-25 179.0 15.0 159 186-351 18-185 (190)
74 1moz_A ARL1, ADP-ribosylation 99.8 1.6E-20 5.3E-25 176.8 15.0 157 187-351 16-178 (183)
75 4dcu_A GTP-binding protein ENG 99.8 7.8E-21 2.7E-25 206.6 14.5 162 186-352 192-368 (456)
76 3bc1_A RAS-related protein RAB 99.8 1.9E-20 6.5E-25 177.2 15.3 155 188-351 10-183 (195)
77 2p5s_A RAS and EF-hand domain 99.8 2.2E-21 7.5E-26 186.3 8.6 163 187-351 26-195 (199)
78 1u8z_A RAS-related protein RAL 99.8 9.1E-21 3.1E-25 174.8 12.4 154 188-351 3-165 (168)
79 1f6b_A SAR1; gtpases, N-termin 99.8 1.7E-20 5.8E-25 180.5 14.8 159 187-349 23-195 (198)
80 3kkq_A RAS-related protein M-R 99.8 1.4E-20 4.8E-25 177.3 13.9 154 187-351 16-180 (183)
81 4dsu_A GTPase KRAS, isoform 2B 99.8 7.7E-21 2.6E-25 179.5 12.0 155 188-352 3-165 (189)
82 3t1o_A Gliding protein MGLA; G 99.8 9.8E-21 3.3E-25 179.9 12.8 156 188-351 13-190 (198)
83 2qu8_A Putative nucleolar GTP- 99.8 2.6E-20 8.8E-25 183.1 16.2 160 187-351 27-203 (228)
84 1z2a_A RAS-related protein RAB 99.8 4.6E-21 1.6E-25 177.3 10.2 155 188-351 4-165 (168)
85 1vg8_A RAS-related protein RAB 99.8 6.1E-21 2.1E-25 183.5 11.4 159 187-351 6-173 (207)
86 1r2q_A RAS-related protein RAB 99.8 1.3E-20 4.6E-25 174.2 13.3 153 188-349 5-165 (170)
87 3iby_A Ferrous iron transport 99.8 2.2E-21 7.5E-26 195.1 8.6 149 190-349 2-163 (256)
88 1zbd_A Rabphilin-3A; G protein 99.8 1.9E-20 6.4E-25 179.8 14.7 155 188-351 7-169 (203)
89 1fzq_A ADP-ribosylation factor 99.8 3.3E-20 1.1E-24 175.6 16.1 155 187-350 14-175 (181)
90 1ek0_A Protein (GTP-binding pr 99.8 1.5E-20 5.3E-25 173.8 13.3 156 189-349 3-165 (170)
91 1mh1_A RAC1; GTP-binding, GTPa 99.8 6.3E-21 2.1E-25 179.6 10.8 161 188-351 4-178 (186)
92 3reg_A RHO-like small GTPase; 99.8 8.1E-21 2.8E-25 181.3 11.7 160 187-351 21-186 (194)
93 2a5j_A RAS-related protein RAB 99.8 1.3E-20 4.4E-25 179.6 13.0 156 187-351 19-182 (191)
94 2b6h_A ADP-ribosylation factor 99.8 1.9E-20 6.4E-25 179.2 14.1 156 187-350 27-188 (192)
95 1kao_A RAP2A; GTP-binding prot 99.8 8.7E-21 3E-25 174.7 11.4 154 188-351 2-164 (167)
96 2bcg_Y Protein YP2, GTP-bindin 99.8 1.4E-20 4.8E-25 181.3 13.2 155 188-351 7-169 (206)
97 2fh5_B SR-beta, signal recogni 99.8 1.9E-20 6.7E-25 181.4 14.1 161 187-350 5-213 (214)
98 1m2o_B GTP-binding protein SAR 99.8 4.2E-20 1.4E-24 176.4 16.3 159 187-349 21-188 (190)
99 3q3j_B RHO-related GTP-binding 99.8 8.6E-21 3E-25 184.9 11.6 165 186-351 24-201 (214)
100 2fn4_A P23, RAS-related protei 99.8 1.3E-20 4.5E-25 176.3 12.3 158 187-352 7-171 (181)
101 2x77_A ADP-ribosylation factor 99.8 2E-20 6.8E-25 177.6 13.7 157 187-351 20-182 (189)
102 2gco_A H9, RHO-related GTP-bin 99.8 6E-21 2E-25 183.7 10.2 164 185-351 21-198 (201)
103 2o52_A RAS-related protein RAB 99.8 9.9E-21 3.4E-25 182.2 11.6 155 187-351 23-186 (200)
104 1z0j_A RAB-22, RAS-related pro 99.8 2.3E-20 7.8E-25 172.9 13.6 155 188-350 5-166 (170)
105 3t5g_A GTP-binding protein RHE 99.8 1.4E-20 4.9E-25 177.0 12.3 154 188-352 5-168 (181)
106 4djt_A GTP-binding nuclear pro 99.8 1.3E-20 4.3E-25 183.3 12.3 159 188-352 10-174 (218)
107 2gf9_A RAS-related protein RAB 99.8 1.6E-20 5.4E-25 178.5 12.7 155 188-351 21-183 (189)
108 1svi_A GTP-binding protein YSX 99.8 3.3E-20 1.1E-24 176.6 14.9 156 187-350 21-192 (195)
109 2oil_A CATX-8, RAS-related pro 99.8 8.6E-21 2.9E-25 180.7 10.8 156 187-351 23-186 (193)
110 1x3s_A RAS-related protein RAB 99.8 1.9E-20 6.5E-25 177.8 13.1 156 188-352 14-177 (195)
111 3pqc_A Probable GTP-binding pr 99.8 3.6E-20 1.2E-24 175.7 14.9 157 187-351 21-192 (195)
112 2bov_A RAla, RAS-related prote 99.8 2.6E-20 8.8E-25 178.7 14.1 157 186-352 11-176 (206)
113 2gf0_A GTP-binding protein DI- 99.8 2.3E-20 7.8E-25 178.1 13.3 155 187-351 6-169 (199)
114 4gzl_A RAS-related C3 botulinu 99.8 1.2E-20 4E-25 182.4 11.4 162 187-349 28-201 (204)
115 2f7s_A C25KG, RAS-related prot 99.8 1.8E-20 6.1E-25 182.1 12.6 155 188-351 24-197 (217)
116 2fg5_A RAB-22B, RAS-related pr 99.8 1.9E-20 6.6E-25 178.7 12.4 154 187-350 21-183 (192)
117 2erx_A GTP-binding protein DI- 99.8 2E-20 6.8E-25 173.4 12.2 155 189-350 3-164 (172)
118 3q85_A GTP-binding protein REM 99.8 3.1E-20 1E-24 172.3 13.4 153 190-351 3-165 (169)
119 2atx_A Small GTP binding prote 99.8 2.3E-20 7.8E-25 177.9 12.9 161 188-351 17-191 (194)
120 3bwd_D RAC-like GTP-binding pr 99.8 5.7E-21 1.9E-25 179.5 8.5 163 187-350 6-178 (182)
121 2nzj_A GTP-binding protein REM 99.8 3.3E-20 1.1E-24 172.9 13.6 156 188-351 3-167 (175)
122 3q72_A GTP-binding protein RAD 99.8 2.9E-20 1E-24 171.9 13.1 155 189-351 2-162 (166)
123 2a9k_A RAS-related protein RAL 99.8 2.3E-20 7.8E-25 175.6 12.5 155 187-351 16-179 (187)
124 2ce2_X GTPase HRAS; signaling 99.8 3.8E-20 1.3E-24 170.0 13.3 154 189-351 3-163 (166)
125 2wjg_A FEOB, ferrous iron tran 99.8 1.1E-20 3.7E-25 178.9 9.8 155 187-351 5-167 (188)
126 2q3h_A RAS homolog gene family 99.8 2.5E-20 8.4E-25 178.7 12.4 166 184-351 15-193 (201)
127 3dz8_A RAS-related protein RAB 99.8 9.6E-21 3.3E-25 180.5 9.5 155 188-351 22-184 (191)
128 1z06_A RAS-related protein RAB 99.8 2.5E-20 8.6E-25 177.1 12.2 156 187-350 18-185 (189)
129 3oes_A GTPase rhebl1; small GT 99.8 1.1E-20 3.9E-25 181.6 9.8 160 183-352 18-186 (201)
130 2yc2_C IFT27, small RAB-relate 99.8 1.9E-20 6.4E-25 179.8 11.3 155 188-351 19-190 (208)
131 3a1s_A Iron(II) transport prot 99.8 1.2E-20 4E-25 190.0 10.3 155 188-352 4-166 (258)
132 2hjg_A GTP-binding protein ENG 99.8 1.5E-20 5E-25 203.3 11.6 152 189-351 3-163 (436)
133 3i8s_A Ferrous iron transport 99.8 3.9E-21 1.3E-25 195.1 6.6 151 188-349 2-165 (274)
134 3cpj_B GTP-binding protein YPT 99.8 1.8E-20 6.2E-25 183.5 10.6 154 188-351 12-174 (223)
135 2j0v_A RAC-like GTP-binding pr 99.8 1.4E-20 4.8E-25 182.2 9.6 160 187-351 7-178 (212)
136 3o47_A ADP-ribosylation factor 99.8 6.5E-20 2.2E-24 191.0 15.1 157 187-351 163-325 (329)
137 3con_A GTPase NRAS; structural 99.8 7.3E-20 2.5E-24 173.6 13.9 155 188-352 20-182 (190)
138 2fv8_A H6, RHO-related GTP-bin 99.8 1.8E-20 6.1E-25 181.2 9.6 162 187-351 23-198 (207)
139 2j1l_A RHO-related GTP-binding 99.8 2.3E-20 8E-25 181.6 10.2 162 187-351 32-207 (214)
140 3cbq_A GTP-binding protein REM 99.8 6.5E-20 2.2E-24 176.1 13.1 158 188-351 22-186 (195)
141 3gj0_A GTP-binding nuclear pro 99.8 2.3E-20 7.7E-25 182.2 10.0 156 187-351 13-173 (221)
142 1m7b_A RND3/RHOE small GTP-bin 99.8 2.9E-20 9.8E-25 176.1 10.1 164 187-351 5-181 (184)
143 3k53_A Ferrous iron transport 99.8 8E-20 2.7E-24 184.9 13.3 153 188-351 2-164 (271)
144 2cxx_A Probable GTP-binding pr 99.8 6.6E-20 2.3E-24 173.3 11.8 155 190-351 2-182 (190)
145 3ihw_A Centg3; RAS, centaurin, 99.8 6.3E-20 2.2E-24 174.4 11.5 155 185-351 16-178 (184)
146 3l0i_B RAS-related protein RAB 99.8 5.7E-21 1.9E-25 183.4 3.1 155 188-349 32-192 (199)
147 3qq5_A Small GTP-binding prote 99.8 5.3E-20 1.8E-24 197.4 10.9 154 188-351 33-194 (423)
148 2atv_A RERG, RAS-like estrogen 99.8 2.1E-19 7.3E-24 171.8 13.6 154 187-351 26-189 (196)
149 2iwr_A Centaurin gamma 1; ANK 99.8 1.5E-19 5E-24 169.5 11.6 150 187-351 5-167 (178)
150 3b1v_A Ferrous iron uptake tra 99.8 8.8E-20 3E-24 185.0 10.6 150 189-350 3-161 (272)
151 4dcu_A GTP-binding protein ENG 99.8 1.3E-19 4.6E-24 196.9 12.1 153 187-350 21-182 (456)
152 1mky_A Probable GTP-binding pr 99.8 2.6E-19 8.8E-24 193.7 14.1 161 187-352 178-354 (439)
153 1gwn_A RHO-related GTP-binding 99.8 1.1E-19 3.8E-24 176.1 9.8 163 188-351 27-202 (205)
154 3llu_A RAS-related GTP-binding 99.8 2.2E-19 7.5E-24 172.0 11.6 162 185-349 16-193 (196)
155 3c5c_A RAS-like protein 12; GD 99.8 2E-19 6.8E-24 171.2 11.2 154 187-351 19-184 (187)
156 3th5_A RAS-related C3 botulinu 99.7 6.6E-21 2.3E-25 183.5 0.0 162 187-349 28-201 (204)
157 2qtf_A Protein HFLX, GTP-bindi 99.8 3.7E-19 1.3E-23 187.7 12.0 165 185-354 174-355 (364)
158 3lvq_E ARF-GAP with SH3 domain 99.8 5.1E-19 1.7E-23 194.2 13.3 157 187-351 320-482 (497)
159 2g3y_A GTP-binding protein GEM 99.8 1.8E-18 6.3E-23 168.8 14.1 157 188-351 36-201 (211)
160 3r7w_A Gtpase1, GTP-binding pr 99.8 7.3E-19 2.5E-23 181.3 11.7 161 188-349 2-177 (307)
161 2zej_A Dardarin, leucine-rich 99.8 9.3E-19 3.2E-23 165.9 10.5 161 189-351 2-176 (184)
162 2xtp_A GTPase IMAP family memb 99.8 7.2E-19 2.5E-23 176.4 10.0 164 187-352 20-207 (260)
163 2cjw_A GTP-binding protein GEM 99.8 1.7E-18 5.7E-23 165.8 10.4 157 188-351 5-170 (192)
164 2wkq_A NPH1-1, RAS-related C3 99.8 3E-18 1E-22 176.8 12.4 162 186-351 152-328 (332)
165 2aka_B Dynamin-1; fusion prote 99.7 6.3E-18 2.2E-22 172.5 12.3 163 187-352 24-252 (299)
166 3lxw_A GTPase IMAP family memb 99.7 3.3E-18 1.1E-22 170.9 9.9 163 187-353 19-208 (247)
167 2e87_A Hypothetical protein PH 99.7 3.8E-17 1.3E-21 172.0 15.2 157 187-352 165-335 (357)
168 1lnz_A SPO0B-associated GTP-bi 99.7 5.6E-18 1.9E-22 177.0 8.7 156 189-352 158-329 (342)
169 2f9l_A RAB11B, member RAS onco 99.7 6.6E-17 2.2E-21 155.1 13.7 153 189-351 5-166 (199)
170 3dpu_A RAB family protein; roc 99.7 1.5E-17 5.2E-22 184.2 9.7 156 186-352 38-207 (535)
171 3c5h_A Glucocorticoid receptor 99.7 9.5E-18 3.2E-22 168.3 5.1 159 186-351 16-253 (255)
172 3t5d_A Septin-7; GTP-binding p 99.7 6.5E-17 2.2E-21 163.8 10.2 153 190-349 9-200 (274)
173 3lxx_A GTPase IMAP family memb 99.7 2E-16 7E-21 156.5 12.1 162 187-352 27-213 (239)
174 1nrj_B SR-beta, signal recogni 99.7 4.1E-17 1.4E-21 158.4 6.7 144 187-339 10-170 (218)
175 1pui_A ENGB, probable GTP-bind 99.7 6E-16 2E-20 149.1 14.7 160 185-351 22-197 (210)
176 1jwy_B Dynamin A GTPase domain 99.7 3.4E-16 1.1E-20 161.1 13.2 162 187-352 22-261 (315)
177 1oix_A RAS-related protein RAB 99.7 4.4E-16 1.5E-20 148.7 12.6 152 189-350 29-189 (191)
178 3r7w_B Gtpase2, GTP-binding pr 99.6 3E-16 1E-20 161.9 10.9 155 191-349 1-170 (331)
179 2j69_A Bacterial dynamin-like 99.6 5.6E-16 1.9E-20 176.4 12.3 165 186-350 66-322 (695)
180 2x2e_A Dynamin-1; nitration, h 99.6 3.9E-16 1.3E-20 164.0 9.5 162 187-351 29-256 (353)
181 3def_A T7I23.11 protein; chlor 99.6 1.1E-15 3.7E-20 153.8 9.7 115 188-303 35-165 (262)
182 1wxq_A GTP-binding protein; st 99.6 2.7E-15 9.1E-20 159.9 7.2 84 190-273 1-114 (397)
183 2ged_A SR-beta, signal recogni 99.6 3E-15 1E-19 142.0 6.5 110 187-304 46-171 (193)
184 2www_A Methylmalonic aciduria 99.5 2.9E-15 9.9E-20 157.1 6.6 158 187-352 72-278 (349)
185 3zvr_A Dynamin-1; hydrolase, D 99.5 1.2E-14 4.2E-19 164.9 12.1 161 187-350 49-275 (772)
186 3t34_A Dynamin-related protein 99.5 1E-14 3.5E-19 153.5 9.7 156 187-348 32-256 (360)
187 1h65_A Chloroplast outer envel 99.5 3.4E-14 1.2E-18 143.4 11.5 115 188-303 38-168 (270)
188 2qag_A Septin-2, protein NEDD5 99.5 2.3E-14 8E-19 150.9 8.4 152 189-350 37-230 (361)
189 3p32_A Probable GTPase RV1496/ 99.5 3.5E-14 1.2E-18 149.2 9.7 111 235-352 170-283 (355)
190 1udx_A The GTP-binding protein 99.5 8.7E-14 3E-18 148.8 12.3 157 187-352 155-324 (416)
191 2p67_A LAO/AO transport system 99.5 3.5E-14 1.2E-18 148.4 8.7 157 187-351 54-259 (341)
192 4a9a_A Ribosome-interacting GT 99.5 1.3E-13 4.5E-18 145.2 11.6 110 190-302 73-195 (376)
193 2wsm_A Hydrogenase expression/ 99.4 7.2E-14 2.5E-18 135.8 6.3 150 188-351 29-212 (221)
194 1jal_A YCHF protein; nucleotid 99.4 5E-13 1.7E-17 140.1 12.1 84 189-272 2-108 (363)
195 2qpt_A EH domain-containing pr 99.4 4.3E-13 1.5E-17 148.7 10.4 117 187-303 63-232 (550)
196 1yrb_A ATP(GTP)binding protein 99.4 3.6E-13 1.2E-17 134.4 8.7 165 187-352 12-256 (262)
197 2dby_A GTP-binding protein; GD 99.3 3.5E-12 1.2E-16 134.3 11.0 83 190-272 2-111 (368)
198 2hf9_A Probable hydrogenase ni 99.3 9E-12 3.1E-16 121.3 10.8 150 188-351 37-222 (226)
199 2qnr_A Septin-2, protein NEDD5 99.3 3.7E-12 1.3E-16 130.7 8.4 156 189-351 18-212 (301)
200 2qm8_A GTPase/ATPase; G protei 99.3 1.3E-12 4.5E-17 136.2 4.2 158 187-352 53-260 (337)
201 2qag_C Septin-7; cell cycle, c 99.2 1.7E-11 5.8E-16 131.1 9.0 153 190-348 32-222 (418)
202 3ohm_A Guanine nucleotide-bind 99.2 3.2E-11 1.1E-15 124.7 9.1 128 223-351 154-316 (327)
203 4fid_A G protein alpha subunit 99.2 5.9E-11 2E-15 123.3 9.8 128 223-351 148-326 (340)
204 1cip_A Protein (guanine nucleo 99.1 8.3E-11 2.8E-15 123.2 7.1 128 223-351 180-342 (353)
205 1u0l_A Probable GTPase ENGC; p 99.0 1.3E-10 4.3E-15 119.3 5.8 134 204-348 32-168 (301)
206 2ohf_A Protein OLA1, GTP-bindi 99.0 2.9E-10 9.9E-15 120.3 7.2 88 185-272 18-128 (396)
207 1zcb_A G alpha I/13; GTP-bindi 99.0 3.3E-10 1.1E-14 119.0 6.7 125 226-351 191-351 (362)
208 2j37_W Signal recognition part 99.0 3.9E-10 1.3E-14 123.1 7.3 158 187-349 99-309 (504)
209 3ec1_A YQEH GTPase; atnos1, at 99.0 1.9E-11 6.4E-16 129.0 -4.1 111 189-303 162-288 (369)
210 3h2y_A GTPase family protein; 98.9 3.6E-11 1.2E-15 126.8 -4.8 111 189-303 160-287 (368)
211 1azs_C GS-alpha; complex (lyas 98.8 6.2E-09 2.1E-13 110.5 7.8 122 226-351 207-383 (402)
212 2xtz_A Guanine nucleotide-bind 98.8 3.6E-09 1.2E-13 110.7 5.7 116 236-351 182-343 (354)
213 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 1.1E-08 3.7E-13 108.4 7.8 88 185-272 16-127 (392)
214 2qag_B Septin-6, protein NEDD5 98.7 2.8E-08 9.6E-13 106.0 10.0 115 187-303 38-190 (427)
215 1tq4_A IIGP1, interferon-induc 98.7 1.1E-07 3.7E-12 101.4 12.3 159 188-350 68-250 (413)
216 3l82_B F-box only protein 4; T 98.6 8.9E-08 3.1E-12 92.0 8.6 160 185-349 12-219 (227)
217 2v3c_C SRP54, signal recogniti 98.5 2.5E-08 8.6E-13 107.1 2.7 112 188-302 98-251 (432)
218 2yv5_A YJEQ protein; hydrolase 98.5 1E-07 3.6E-12 97.5 5.8 97 247-348 66-164 (302)
219 3dm5_A SRP54, signal recogniti 98.4 5.1E-07 1.7E-11 96.7 10.1 142 188-343 99-281 (443)
220 1puj_A YLQF, conserved hypothe 98.4 1.3E-07 4.6E-12 95.8 4.7 59 186-248 117-176 (282)
221 3sop_A Neuronal-specific septi 98.4 3.8E-07 1.3E-11 91.8 8.0 112 190-303 3-154 (270)
222 1f5n_A Interferon-induced guan 98.4 1.5E-07 5E-12 104.5 4.5 95 187-284 36-144 (592)
223 3l2o_B F-box only protein 4; s 98.4 8.5E-07 2.9E-11 89.2 9.1 101 245-350 195-305 (312)
224 3e70_C DPA, signal recognition 98.2 1.8E-06 6.3E-11 89.3 7.5 143 187-343 127-310 (328)
225 1puj_A YLQF, conserved hypothe 98.2 2.8E-06 9.5E-11 86.0 8.6 102 241-352 3-105 (282)
226 3kl4_A SRP54, signal recogniti 98.1 1.8E-06 6.2E-11 92.4 5.4 142 188-343 96-280 (433)
227 1j8m_F SRP54, signal recogniti 98.1 1.6E-05 5.5E-10 81.0 11.8 141 189-344 98-282 (297)
228 3cnl_A YLQF, putative uncharac 98.1 9.8E-07 3.3E-11 88.4 2.2 56 190-249 100-156 (262)
229 3h2y_A GTPase family protein; 98.0 5.8E-06 2E-10 86.9 5.9 100 246-350 55-157 (368)
230 3ec1_A YQEH GTPase; atnos1, at 98.0 7.6E-06 2.6E-10 86.0 6.7 100 246-350 57-159 (369)
231 3szr_A Interferon-induced GTP- 97.9 2.3E-05 7.7E-10 87.8 8.9 68 237-304 147-229 (608)
232 3cnl_A YLQF, putative uncharac 97.6 1.1E-05 3.6E-10 80.8 1.2 92 244-348 4-96 (262)
233 3e1y_E Eukaryotic peptide chai 97.6 0.00013 4.5E-09 70.1 8.5 83 360-445 3-90 (204)
234 3q5d_A Atlastin-1; G protein, 97.4 0.00012 4.1E-09 78.6 6.0 25 188-212 66-90 (447)
235 2xxa_A Signal recognition part 97.4 0.00017 5.9E-09 77.2 7.0 112 188-302 99-253 (433)
236 1t9h_A YLOQ, probable GTPase E 97.3 0.00014 4.6E-09 74.4 3.9 87 256-347 82-171 (307)
237 2yhs_A FTSY, cell division pro 97.2 0.00058 2E-08 73.9 8.6 143 186-343 290-480 (503)
238 1rj9_A FTSY, signal recognitio 97.1 0.0014 4.7E-08 66.9 9.5 24 188-211 101-124 (304)
239 1zu4_A FTSY; GTPase, signal re 97.0 0.0016 5.5E-08 66.9 8.7 65 235-302 190-267 (320)
240 1vma_A Cell division protein F 96.8 0.00043 1.5E-08 70.7 2.7 25 187-211 102-126 (306)
241 2ffh_A Protein (FFH); SRP54, s 96.7 0.00061 2.1E-08 72.6 3.2 65 235-302 179-250 (425)
242 4dzz_A Plasmid partitioning pr 96.7 0.00092 3.1E-08 63.0 3.5 65 235-302 74-143 (206)
243 2px0_A Flagellar biosynthesis 96.6 0.0016 5.4E-08 66.2 5.4 112 187-302 103-252 (296)
244 2rcn_A Probable GTPase ENGC; Y 96.5 0.0035 1.2E-07 65.3 6.7 85 256-347 126-213 (358)
245 1t9h_A YLOQ, probable GTPase E 96.4 0.00074 2.5E-08 68.9 1.4 59 187-250 171-237 (307)
246 3ney_A 55 kDa erythrocyte memb 96.2 0.00098 3.3E-08 63.6 0.7 58 186-246 16-75 (197)
247 2yv5_A YJEQ protein; hydrolase 96.2 0.0032 1.1E-07 64.0 4.3 23 188-210 164-186 (302)
248 2rcn_A Probable GTPase ENGC; Y 96.1 0.0029 1E-07 65.8 3.9 26 188-213 214-239 (358)
249 1ls1_A Signal recognition part 96.0 0.0025 8.4E-08 64.7 2.7 65 235-302 179-250 (295)
250 1xe1_A Hypothetical protein PF 96.0 0.031 1.1E-06 48.1 9.0 79 361-442 32-113 (116)
251 1bif_A 6-phosphofructo-2-kinas 95.9 0.0015 5E-08 70.7 0.5 112 187-300 37-160 (469)
252 3cwq_A Para family chromosome 95.9 0.004 1.4E-07 59.5 3.4 67 235-303 66-134 (209)
253 1u0l_A Probable GTPase ENGC; p 95.5 0.0053 1.8E-07 62.2 2.7 26 188-213 168-193 (301)
254 1kgd_A CASK, peripheral plasma 95.3 0.0072 2.5E-07 56.1 2.8 25 188-212 4-28 (180)
255 1lvg_A Guanylate kinase, GMP k 95.2 0.0063 2.2E-07 57.6 1.9 25 188-212 3-27 (198)
256 3end_A Light-independent proto 95.1 0.028 9.4E-07 56.7 6.5 66 235-301 155-225 (307)
257 3tr0_A Guanylate kinase, GMP k 95.1 0.0095 3.3E-07 55.9 2.8 25 188-212 6-30 (205)
258 1zp6_A Hypothetical protein AT 94.9 0.01 3.5E-07 55.1 2.5 26 187-212 7-32 (191)
259 1ye8_A Protein THEP1, hypothet 94.9 0.01 3.5E-07 55.4 2.4 22 191-212 2-23 (178)
260 3c8u_A Fructokinase; YP_612366 94.9 0.01 3.5E-07 56.4 2.5 27 186-212 19-45 (208)
261 1znw_A Guanylate kinase, GMP k 94.8 0.012 4E-07 55.9 2.7 28 185-212 16-43 (207)
262 3tau_A Guanylate kinase, GMP k 94.7 0.015 5E-07 55.4 2.9 26 187-212 6-31 (208)
263 2j41_A Guanylate kinase; GMP, 94.7 0.014 4.9E-07 54.7 2.8 27 187-213 4-30 (207)
264 1s96_A Guanylate kinase, GMP k 94.6 0.013 4.6E-07 56.5 2.6 28 186-213 13-40 (219)
265 1z6g_A Guanylate kinase; struc 94.6 0.012 4.2E-07 56.5 2.2 28 186-213 20-47 (218)
266 1ex7_A Guanylate kinase; subst 94.6 0.0049 1.7E-07 58.1 -0.6 35 192-226 4-40 (186)
267 3a00_A Guanylate kinase, GMP k 94.5 0.013 4.4E-07 54.7 2.1 23 190-212 2-24 (186)
268 4ido_A Atlastin-1; GTPase, GTP 94.3 0.043 1.5E-06 58.6 5.9 94 189-284 67-192 (457)
269 3asz_A Uridine kinase; cytidin 94.2 0.017 5.8E-07 54.6 2.1 26 187-212 4-29 (211)
270 3tif_A Uncharacterized ABC tra 94.1 0.023 8E-07 55.4 3.0 27 186-212 28-54 (235)
271 4eun_A Thermoresistant glucoki 94.1 0.021 7.3E-07 53.7 2.6 25 187-211 27-51 (200)
272 2bbw_A Adenylate kinase 4, AK4 94.0 0.024 8.3E-07 55.2 2.9 24 187-210 25-48 (246)
273 4gp7_A Metallophosphoesterase; 93.9 0.019 6.4E-07 52.9 1.9 25 187-211 7-31 (171)
274 2qor_A Guanylate kinase; phosp 93.9 0.021 7.2E-07 53.9 2.2 26 187-212 10-35 (204)
275 1kag_A SKI, shikimate kinase I 93.9 0.021 7.2E-07 52.0 2.1 24 189-212 4-27 (173)
276 2v9p_A Replication protein E1; 93.9 0.026 8.7E-07 57.4 2.8 27 186-212 123-149 (305)
277 2pcj_A ABC transporter, lipopr 93.8 0.024 8.2E-07 54.8 2.4 27 186-212 27-53 (224)
278 3lnc_A Guanylate kinase, GMP k 93.8 0.022 7.4E-07 55.0 2.1 27 186-212 24-51 (231)
279 1htw_A HI0065; nucleotide-bind 93.8 0.024 8.2E-07 51.8 2.3 27 187-213 31-57 (158)
280 2cbz_A Multidrug resistance-as 93.8 0.029 1E-06 54.7 3.0 28 186-213 28-55 (237)
281 1b0u_A Histidine permease; ABC 93.6 0.031 1.1E-06 55.4 3.0 27 186-212 29-55 (262)
282 2pze_A Cystic fibrosis transme 93.5 0.03 1E-06 54.4 2.5 27 187-213 32-58 (229)
283 1knq_A Gluconate kinase; ALFA/ 93.5 0.028 9.5E-07 51.4 2.2 25 187-211 6-30 (175)
284 2ghi_A Transport protein; mult 93.5 0.035 1.2E-06 55.0 3.0 27 186-212 43-69 (260)
285 2olj_A Amino acid ABC transpor 93.4 0.036 1.2E-06 55.0 3.0 27 186-212 47-73 (263)
286 1g6h_A High-affinity branched- 93.4 0.031 1.1E-06 55.2 2.5 28 186-213 30-57 (257)
287 1mv5_A LMRA, multidrug resista 93.4 0.032 1.1E-06 54.7 2.5 27 186-212 25-51 (243)
288 2orw_A Thymidine kinase; TMTK, 93.4 0.18 6.2E-06 47.0 7.6 40 262-301 76-115 (184)
289 2ff7_A Alpha-hemolysin translo 93.3 0.033 1.1E-06 54.7 2.5 26 187-212 33-58 (247)
290 1vpl_A ABC transporter, ATP-bi 93.3 0.039 1.3E-06 54.6 3.0 27 186-212 38-64 (256)
291 3aez_A Pantothenate kinase; tr 93.3 0.032 1.1E-06 56.9 2.4 27 186-212 87-113 (312)
292 3gfo_A Cobalt import ATP-bindi 93.3 0.033 1.1E-06 55.7 2.4 27 186-212 31-57 (275)
293 4g1u_C Hemin import ATP-bindin 93.3 0.037 1.3E-06 55.0 2.8 27 186-212 34-60 (266)
294 2ixe_A Antigen peptide transpo 93.2 0.04 1.4E-06 55.0 3.0 27 186-212 42-68 (271)
295 1ji0_A ABC transporter; ATP bi 93.2 0.035 1.2E-06 54.3 2.5 27 186-212 29-55 (240)
296 1sgw_A Putative ABC transporte 93.2 0.034 1.2E-06 53.5 2.4 26 187-212 33-58 (214)
297 3t61_A Gluconokinase; PSI-biol 93.2 0.035 1.2E-06 52.1 2.4 26 187-212 16-41 (202)
298 2qt1_A Nicotinamide riboside k 93.2 0.041 1.4E-06 51.9 2.9 27 186-212 18-44 (207)
299 3lw7_A Adenylate kinase relate 93.1 0.038 1.3E-06 49.8 2.5 20 190-209 2-21 (179)
300 3uie_A Adenylyl-sulfate kinase 93.1 0.034 1.2E-06 52.3 2.3 26 187-212 23-48 (200)
301 3b85_A Phosphate starvation-in 93.1 0.039 1.3E-06 52.8 2.7 25 188-212 21-45 (208)
302 1kht_A Adenylate kinase; phosp 93.1 0.038 1.3E-06 50.9 2.5 24 188-211 2-25 (192)
303 2zu0_C Probable ATP-dependent 93.1 0.043 1.5E-06 54.6 3.0 27 186-212 43-69 (267)
304 2onk_A Molybdate/tungstate ABC 93.1 0.037 1.3E-06 54.1 2.4 23 190-212 25-47 (240)
305 2pt7_A CAG-ALFA; ATPase, prote 93.1 0.47 1.6E-05 48.5 10.8 25 188-212 170-194 (330)
306 2qi9_C Vitamin B12 import ATP- 93.1 0.043 1.5E-06 54.1 2.9 26 187-212 24-49 (249)
307 1cke_A CK, MSSA, protein (cyti 93.0 0.042 1.4E-06 52.4 2.8 23 189-211 5-27 (227)
308 2yz2_A Putative ABC transporte 93.0 0.045 1.5E-06 54.4 3.0 27 186-212 30-56 (266)
309 2d2e_A SUFC protein; ABC-ATPas 93.0 0.043 1.5E-06 54.0 2.8 27 186-212 26-52 (250)
310 2jeo_A Uridine-cytidine kinase 93.0 0.036 1.2E-06 54.0 2.3 27 186-212 22-48 (245)
311 2bdt_A BH3686; alpha-beta prot 92.9 0.039 1.3E-06 51.1 2.2 22 190-211 3-24 (189)
312 2ihy_A ABC transporter, ATP-bi 92.9 0.046 1.6E-06 54.7 2.9 28 186-213 44-71 (279)
313 3vaa_A Shikimate kinase, SK; s 92.8 0.046 1.6E-06 51.4 2.6 25 187-211 23-47 (199)
314 2eyu_A Twitching motility prot 92.8 0.039 1.3E-06 54.7 2.3 26 187-212 23-48 (261)
315 1np6_A Molybdopterin-guanine d 92.8 0.047 1.6E-06 50.7 2.6 24 189-212 6-29 (174)
316 2nq2_C Hypothetical ABC transp 92.8 0.049 1.7E-06 53.7 2.9 27 187-213 29-55 (253)
317 3kb2_A SPBC2 prophage-derived 92.8 0.044 1.5E-06 49.5 2.4 23 190-212 2-24 (173)
318 2v54_A DTMP kinase, thymidylat 92.8 0.051 1.7E-06 50.8 2.8 25 188-212 3-27 (204)
319 3ec2_A DNA replication protein 92.7 0.035 1.2E-06 51.1 1.6 26 188-213 37-62 (180)
320 2kjq_A DNAA-related protein; s 92.7 0.054 1.9E-06 48.8 2.8 26 188-213 35-60 (149)
321 2i3b_A HCR-ntpase, human cance 92.7 0.041 1.4E-06 51.8 2.0 23 190-212 2-24 (189)
322 1uf9_A TT1252 protein; P-loop, 92.7 0.044 1.5E-06 51.1 2.3 28 185-212 4-31 (203)
323 1y63_A LMAJ004144AAA protein; 92.7 0.054 1.8E-06 50.2 2.8 27 186-212 7-33 (184)
324 2ehv_A Hypothetical protein PH 92.6 0.046 1.6E-06 52.7 2.4 26 186-211 27-52 (251)
325 1qhx_A CPT, protein (chloramph 92.6 0.058 2E-06 49.3 2.9 24 188-211 2-25 (178)
326 2plr_A DTMP kinase, probable t 92.6 0.046 1.6E-06 51.3 2.3 25 188-212 3-27 (213)
327 1ly1_A Polynucleotide kinase; 92.5 0.044 1.5E-06 50.0 2.0 22 190-211 3-24 (181)
328 2bbs_A Cystic fibrosis transme 92.5 0.057 1.9E-06 54.4 3.0 27 186-212 61-87 (290)
329 3nh6_A ATP-binding cassette SU 92.5 0.04 1.4E-06 56.0 1.8 27 186-212 77-103 (306)
330 2rhm_A Putative kinase; P-loop 92.5 0.05 1.7E-06 50.2 2.4 24 188-211 4-27 (193)
331 2b8t_A Thymidine kinase; deoxy 92.5 0.079 2.7E-06 51.3 3.8 41 262-302 89-129 (223)
332 2c95_A Adenylate kinase 1; tra 92.3 0.06 2E-06 49.9 2.7 25 187-211 7-31 (196)
333 1nn5_A Similar to deoxythymidy 92.3 0.062 2.1E-06 50.5 2.8 26 187-212 7-32 (215)
334 4a74_A DNA repair and recombin 92.3 0.039 1.3E-06 52.4 1.4 27 186-212 22-48 (231)
335 1tev_A UMP-CMP kinase; ploop, 92.2 0.05 1.7E-06 50.2 2.0 24 188-211 2-25 (196)
336 3cm0_A Adenylate kinase; ATP-b 92.2 0.046 1.6E-06 50.3 1.7 24 188-211 3-26 (186)
337 2if2_A Dephospho-COA kinase; a 92.2 0.056 1.9E-06 50.7 2.3 22 190-211 2-23 (204)
338 2wwf_A Thymidilate kinase, put 92.2 0.058 2E-06 50.7 2.5 26 187-212 8-33 (212)
339 1rz3_A Hypothetical protein rb 92.2 0.055 1.9E-06 51.0 2.2 25 187-211 20-44 (201)
340 2ph1_A Nucleotide-binding prot 92.1 0.25 8.7E-06 48.3 7.1 67 235-301 127-194 (262)
341 4e22_A Cytidylate kinase; P-lo 92.0 0.069 2.4E-06 52.4 2.8 25 187-211 25-49 (252)
342 2vp4_A Deoxynucleoside kinase; 92.0 0.061 2.1E-06 51.8 2.4 27 186-212 17-43 (230)
343 1sq5_A Pantothenate kinase; P- 92.0 0.058 2E-06 54.7 2.3 26 187-212 78-103 (308)
344 1aky_A Adenylate kinase; ATP:A 92.0 0.068 2.3E-06 50.9 2.7 24 188-211 3-26 (220)
345 2pjz_A Hypothetical protein ST 91.9 0.071 2.4E-06 52.9 2.8 27 186-213 28-54 (263)
346 2jaq_A Deoxyguanosine kinase; 91.9 0.065 2.2E-06 49.8 2.3 21 191-211 2-22 (205)
347 3iij_A Coilin-interacting nucl 91.8 0.07 2.4E-06 49.0 2.5 25 187-211 9-33 (180)
348 3tui_C Methionine import ATP-b 91.8 0.076 2.6E-06 55.3 3.0 27 186-212 51-77 (366)
349 2yvu_A Probable adenylyl-sulfa 91.8 0.073 2.5E-06 49.2 2.6 27 186-212 10-36 (186)
350 2vli_A Antibiotic resistance p 91.8 0.07 2.4E-06 48.9 2.4 24 188-211 4-27 (183)
351 3trf_A Shikimate kinase, SK; a 91.8 0.072 2.5E-06 49.0 2.5 24 188-211 4-27 (185)
352 3zvl_A Bifunctional polynucleo 91.7 0.17 5.8E-06 53.5 5.7 26 187-212 256-281 (416)
353 3fvq_A Fe(3+) IONS import ATP- 91.7 0.079 2.7E-06 55.0 3.0 27 186-212 27-53 (359)
354 1zak_A Adenylate kinase; ATP:A 91.7 0.068 2.3E-06 51.0 2.3 25 187-211 3-27 (222)
355 2cdn_A Adenylate kinase; phosp 91.6 0.083 2.8E-06 49.5 2.8 26 186-211 17-42 (201)
356 2yyz_A Sugar ABC transporter, 91.6 0.083 2.8E-06 54.9 3.0 27 186-212 26-52 (359)
357 1jjv_A Dephospho-COA kinase; P 91.6 0.074 2.5E-06 50.0 2.4 22 190-211 3-24 (206)
358 2f1r_A Molybdopterin-guanine d 91.6 0.038 1.3E-06 51.2 0.4 23 190-212 3-25 (171)
359 1nks_A Adenylate kinase; therm 91.5 0.071 2.4E-06 49.0 2.2 22 191-212 3-24 (194)
360 1zd8_A GTP:AMP phosphotransfer 91.5 0.08 2.7E-06 50.7 2.6 25 187-211 5-29 (227)
361 2gza_A Type IV secretion syste 91.5 0.07 2.4E-06 55.4 2.4 25 188-212 174-198 (361)
362 2pez_A Bifunctional 3'-phospho 91.5 0.073 2.5E-06 48.9 2.2 26 187-212 3-28 (179)
363 2it1_A 362AA long hypothetical 91.4 0.088 3E-06 54.8 3.0 27 186-212 26-52 (362)
364 3tqc_A Pantothenate kinase; bi 91.4 0.074 2.5E-06 54.4 2.3 25 187-211 90-114 (321)
365 1odf_A YGR205W, hypothetical 3 91.3 0.074 2.5E-06 53.5 2.3 26 187-212 29-54 (290)
366 1xjc_A MOBB protein homolog; s 91.3 0.088 3E-06 48.7 2.5 25 188-212 3-27 (169)
367 3rlf_A Maltose/maltodextrin im 91.3 0.093 3.2E-06 54.9 3.0 27 186-212 26-52 (381)
368 1v43_A Sugar-binding transport 91.3 0.094 3.2E-06 54.7 3.0 27 186-212 34-60 (372)
369 1z47_A CYSA, putative ABC-tran 91.2 0.092 3.2E-06 54.4 2.8 26 187-212 39-64 (355)
370 2npi_A Protein CLP1; CLP1-PCF1 91.1 0.08 2.7E-06 56.9 2.4 25 188-212 137-161 (460)
371 3tlx_A Adenylate kinase 2; str 91.1 0.084 2.9E-06 51.4 2.3 24 188-211 28-51 (243)
372 1sxj_A Activator 1 95 kDa subu 91.0 0.54 1.8E-05 51.0 8.9 25 188-212 76-100 (516)
373 3fb4_A Adenylate kinase; psych 91.0 0.093 3.2E-06 49.6 2.5 21 191-211 2-22 (216)
374 2bwj_A Adenylate kinase 5; pho 91.0 0.093 3.2E-06 48.7 2.4 24 188-211 11-34 (199)
375 3umf_A Adenylate kinase; rossm 91.0 0.096 3.3E-06 50.4 2.6 28 185-212 25-52 (217)
376 1g29_1 MALK, maltose transport 90.9 0.1 3.5E-06 54.4 2.8 26 187-212 27-52 (372)
377 2w0m_A SSO2452; RECA, SSPF, un 90.9 0.084 2.9E-06 50.0 2.0 27 186-212 20-46 (235)
378 2ewv_A Twitching motility prot 90.7 0.091 3.1E-06 54.8 2.3 26 187-212 134-159 (372)
379 3dl0_A Adenylate kinase; phosp 90.7 0.1 3.5E-06 49.3 2.5 21 191-211 2-22 (216)
380 1ukz_A Uridylate kinase; trans 90.6 0.12 4.1E-06 48.3 2.9 25 187-211 13-37 (203)
381 1lw7_A Transcriptional regulat 90.6 0.077 2.6E-06 55.0 1.6 24 189-212 170-193 (365)
382 3jvv_A Twitching mobility prot 90.6 0.092 3.2E-06 54.5 2.2 24 189-212 123-146 (356)
383 3b9q_A Chloroplast SRP recepto 90.6 0.098 3.4E-06 53.0 2.3 26 186-211 97-122 (302)
384 2cvh_A DNA repair and recombin 90.5 0.12 4.1E-06 48.6 2.8 26 186-211 17-42 (220)
385 1cr0_A DNA primase/helicase; R 90.5 0.12 4E-06 51.7 2.8 28 186-213 32-59 (296)
386 3d31_A Sulfate/molybdate ABC t 90.5 0.082 2.8E-06 54.7 1.7 27 186-212 23-49 (348)
387 2x8a_A Nuclear valosin-contain 90.5 0.091 3.1E-06 52.3 2.0 21 192-212 47-67 (274)
388 3gd7_A Fusion complex of cysti 90.5 0.12 4.1E-06 54.3 3.0 27 186-212 44-70 (390)
389 2oap_1 GSPE-2, type II secreti 90.5 0.1 3.5E-06 56.8 2.5 25 188-212 259-283 (511)
390 1vht_A Dephospho-COA kinase; s 90.2 0.12 4E-06 49.1 2.4 24 188-211 3-26 (218)
391 3be4_A Adenylate kinase; malar 90.2 0.11 3.9E-06 49.3 2.3 24 188-211 4-27 (217)
392 1gvn_B Zeta; postsegregational 90.2 0.12 3.9E-06 51.9 2.4 25 187-211 31-55 (287)
393 1qf9_A UMP/CMP kinase, protein 90.2 0.12 4E-06 47.5 2.3 23 189-211 6-28 (194)
394 3r20_A Cytidylate kinase; stru 90.1 0.13 4.4E-06 50.1 2.6 26 186-211 6-31 (233)
395 4eaq_A DTMP kinase, thymidylat 90.1 0.12 4.1E-06 50.0 2.4 26 187-212 24-49 (229)
396 2iyv_A Shikimate kinase, SK; t 90.1 0.11 3.8E-06 47.7 2.1 22 190-211 3-24 (184)
397 1m7g_A Adenylylsulfate kinase; 90.0 0.12 4.1E-06 48.9 2.3 26 187-212 23-48 (211)
398 1oxx_K GLCV, glucose, ABC tran 90.0 0.078 2.7E-06 55.0 1.0 27 186-212 28-54 (353)
399 1jbk_A CLPB protein; beta barr 90.0 0.14 4.8E-06 46.4 2.6 24 189-212 43-66 (195)
400 1gtv_A TMK, thymidylate kinase 90.0 0.067 2.3E-06 50.3 0.4 22 191-212 2-23 (214)
401 1ak2_A Adenylate kinase isoenz 90.0 0.14 4.9E-06 49.2 2.8 28 185-212 12-39 (233)
402 2p5t_B PEZT; postsegregational 89.8 0.097 3.3E-06 51.3 1.5 27 186-212 29-55 (253)
403 1via_A Shikimate kinase; struc 89.8 0.12 4E-06 47.2 1.9 21 191-211 6-26 (175)
404 1e4v_A Adenylate kinase; trans 89.7 0.13 4.6E-06 48.6 2.3 21 191-211 2-22 (214)
405 3a4m_A L-seryl-tRNA(SEC) kinas 89.7 0.13 4.4E-06 50.6 2.3 24 188-211 3-26 (260)
406 1nij_A Hypothetical protein YJ 89.7 0.11 3.8E-06 52.8 1.9 24 189-212 4-27 (318)
407 2pbr_A DTMP kinase, thymidylat 89.7 0.14 4.7E-06 47.1 2.3 21 191-211 2-22 (195)
408 2z0h_A DTMP kinase, thymidylat 89.5 0.15 5E-06 47.2 2.4 22 191-212 2-23 (197)
409 2yl4_A ATP-binding cassette SU 89.5 0.16 5.6E-06 56.2 3.2 27 186-212 367-393 (595)
410 3nwj_A ATSK2; P loop, shikimat 89.5 0.13 4.6E-06 50.5 2.2 23 189-211 48-70 (250)
411 1ixz_A ATP-dependent metallopr 89.5 0.13 4.3E-06 50.1 2.0 21 192-212 52-72 (254)
412 2pt5_A Shikimate kinase, SK; a 89.4 0.16 5.3E-06 45.8 2.5 21 191-211 2-22 (168)
413 1svm_A Large T antigen; AAA+ f 89.4 0.16 5.6E-06 53.0 2.9 26 186-211 166-191 (377)
414 3qf4_B Uncharacterized ABC tra 89.4 0.18 6.1E-06 56.0 3.3 27 186-212 378-404 (598)
415 1n0w_A DNA repair protein RAD5 89.3 0.13 4.4E-06 49.2 1.9 27 186-212 21-47 (243)
416 1p9r_A General secretion pathw 89.2 0.13 4.6E-06 54.4 2.1 25 188-212 166-190 (418)
417 3b60_A Lipid A export ATP-bind 89.2 0.17 5.8E-06 56.0 3.0 26 187-212 367-392 (582)
418 3kta_A Chromosome segregation 89.2 0.14 5E-06 46.8 2.1 22 190-211 27-48 (182)
419 2obl_A ESCN; ATPase, hydrolase 89.1 0.16 5.6E-06 52.4 2.6 27 186-212 68-94 (347)
420 2og2_A Putative signal recogni 88.9 0.15 5.2E-06 52.9 2.3 26 186-211 154-179 (359)
421 1yqt_A RNAse L inhibitor; ATP- 88.9 0.19 6.4E-06 55.1 3.1 27 186-212 44-70 (538)
422 4a82_A Cystic fibrosis transme 88.9 0.17 5.7E-06 56.0 2.7 26 187-212 365-390 (578)
423 3sr0_A Adenylate kinase; phosp 88.9 0.17 5.8E-06 48.2 2.4 22 191-212 2-23 (206)
424 1q3t_A Cytidylate kinase; nucl 88.8 0.2 6.9E-06 48.3 2.9 26 186-211 13-38 (236)
425 3b5x_A Lipid A export ATP-bind 88.7 0.19 6.4E-06 55.6 2.9 26 187-212 367-392 (582)
426 1e6c_A Shikimate kinase; phosp 88.6 0.17 5.7E-06 45.8 2.1 22 190-211 3-24 (173)
427 1in4_A RUVB, holliday junction 88.6 0.17 5.9E-06 51.6 2.4 23 190-212 52-74 (334)
428 3ozx_A RNAse L inhibitor; ATP 88.5 0.19 6.6E-06 55.0 2.8 27 186-212 22-48 (538)
429 3pfi_A Holliday junction ATP-d 88.4 0.7 2.4E-05 46.7 6.8 24 189-212 55-78 (338)
430 3bos_A Putative DNA replicatio 88.3 0.21 7.3E-06 47.3 2.7 25 188-212 51-75 (242)
431 2xb4_A Adenylate kinase; ATP-b 88.3 0.19 6.5E-06 48.1 2.3 21 191-211 2-22 (223)
432 2f6r_A COA synthase, bifunctio 88.3 0.2 6.9E-06 49.9 2.6 24 187-210 73-96 (281)
433 3j16_B RLI1P; ribosome recycli 88.3 0.22 7.4E-06 55.4 3.1 27 186-212 100-126 (608)
434 1uj2_A Uridine-cytidine kinase 88.3 0.19 6.4E-06 49.0 2.3 25 187-211 20-44 (252)
435 1iy2_A ATP-dependent metallopr 88.2 0.17 5.9E-06 50.0 2.0 21 192-212 76-96 (278)
436 2dpy_A FLII, flagellum-specifi 88.1 0.2 6.9E-06 53.4 2.6 27 186-212 154-180 (438)
437 3qf4_A ABC transporter, ATP-bi 88.1 0.21 7.1E-06 55.3 2.8 27 186-212 366-392 (587)
438 2p65_A Hypothetical protein PF 88.1 0.18 6.1E-06 45.6 1.8 24 189-212 43-66 (187)
439 1a7j_A Phosphoribulokinase; tr 88.0 0.21 7.3E-06 50.1 2.5 24 188-211 4-27 (290)
440 2ze6_A Isopentenyl transferase 87.9 0.2 6.8E-06 49.1 2.2 21 191-211 3-23 (253)
441 3bk7_A ABC transporter ATP-bin 87.7 0.25 8.4E-06 55.0 3.1 27 186-212 114-140 (607)
442 1p5z_B DCK, deoxycytidine kina 87.6 0.21 7.2E-06 49.0 2.2 28 185-212 20-47 (263)
443 1f2t_A RAD50 ABC-ATPase; DNA d 87.5 0.22 7.7E-06 44.6 2.2 22 189-210 23-44 (149)
444 1nlf_A Regulatory protein REPA 87.4 0.2 6.9E-06 49.6 1.9 26 186-211 27-52 (279)
445 2w58_A DNAI, primosome compone 87.2 0.26 9E-06 45.9 2.5 24 189-212 54-77 (202)
446 3euj_A Chromosome partition pr 87.1 0.23 7.8E-06 53.6 2.2 22 190-211 30-51 (483)
447 1lv7_A FTSH; alpha/beta domain 87.0 0.29 9.8E-06 47.6 2.8 24 189-212 45-68 (257)
448 2vhj_A Ntpase P4, P4; non- hyd 87.0 0.68 2.3E-05 47.3 5.6 25 188-212 122-146 (331)
449 1xx6_A Thymidine kinase; NESG, 87.0 1.3 4.4E-05 41.5 7.2 107 187-301 6-120 (191)
450 1zuh_A Shikimate kinase; alpha 87.0 0.27 9.1E-06 44.4 2.3 23 189-211 7-29 (168)
451 3io5_A Recombination and repai 86.8 1.7 5.6E-05 44.3 8.3 44 186-247 26-69 (333)
452 3hr8_A Protein RECA; alpha and 86.7 1 3.5E-05 46.5 6.9 27 186-212 58-84 (356)
453 3ake_A Cytidylate kinase; CMP 86.7 0.28 9.7E-06 45.6 2.5 21 191-211 4-24 (208)
454 3ozx_A RNAse L inhibitor; ATP 86.3 0.29 9.8E-06 53.6 2.5 27 187-213 292-318 (538)
455 2zr9_A Protein RECA, recombina 86.1 1.3 4.5E-05 45.5 7.3 27 186-212 58-84 (349)
456 3e2i_A Thymidine kinase; Zn-bi 86.0 1.2 4.1E-05 42.7 6.4 108 187-302 26-141 (219)
457 1yqt_A RNAse L inhibitor; ATP- 86.0 0.28 9.5E-06 53.7 2.2 27 187-213 310-336 (538)
458 3v9p_A DTMP kinase, thymidylat 85.9 0.33 1.1E-05 46.9 2.5 26 187-212 23-48 (227)
459 2ocp_A DGK, deoxyguanosine kin 85.9 0.29 1E-05 47.2 2.1 25 188-212 1-25 (241)
460 2dr3_A UPF0273 protein PH0284; 85.8 0.3 1E-05 46.7 2.1 26 186-211 20-45 (247)
461 3qf7_A RAD50; ABC-ATPase, ATPa 85.8 0.29 9.9E-06 50.8 2.2 20 191-210 25-44 (365)
462 3bfv_A CAPA1, CAPB2, membrane 85.7 0.8 2.7E-05 45.3 5.3 65 237-302 192-257 (271)
463 2chg_A Replication factor C sm 85.7 0.32 1.1E-05 45.1 2.2 23 190-212 39-61 (226)
464 3h4m_A Proteasome-activating n 85.7 0.38 1.3E-05 47.3 2.9 25 188-212 50-74 (285)
465 1hqc_A RUVB; extended AAA-ATPa 85.6 1.1 3.6E-05 44.9 6.2 24 189-212 38-61 (324)
466 1tue_A Replication protein E1; 85.4 0.32 1.1E-05 46.5 2.0 25 187-211 56-80 (212)
467 2h92_A Cytidylate kinase; ross 85.4 0.32 1.1E-05 45.9 2.1 24 188-211 2-25 (219)
468 4f4c_A Multidrug resistance pr 85.3 0.36 1.2E-05 58.5 3.0 26 187-212 1103-1128(1321)
469 1ltq_A Polynucleotide kinase; 85.3 0.32 1.1E-05 48.4 2.1 22 190-211 3-24 (301)
470 1g7s_A Translation initiation 85.2 4.5 0.00015 44.6 11.5 90 362-454 462-560 (594)
471 2qz4_A Paraplegin; AAA+, SPG7, 85.2 0.42 1.5E-05 46.2 2.9 26 187-212 37-62 (262)
472 3bk7_A ABC transporter ATP-bin 85.2 0.34 1.2E-05 53.8 2.5 27 187-213 380-406 (607)
473 1njg_A DNA polymerase III subu 85.1 0.38 1.3E-05 45.1 2.4 23 190-212 46-68 (250)
474 4edh_A DTMP kinase, thymidylat 85.1 0.35 1.2E-05 46.2 2.2 25 187-211 4-28 (213)
475 2qmh_A HPR kinase/phosphorylas 84.8 0.42 1.4E-05 45.4 2.5 25 188-212 33-57 (205)
476 3b9p_A CG5977-PA, isoform A; A 84.7 0.43 1.5E-05 47.3 2.7 25 188-212 53-77 (297)
477 3t15_A Ribulose bisphosphate c 84.7 0.44 1.5E-05 47.6 2.8 26 187-212 34-59 (293)
478 3cio_A ETK, tyrosine-protein k 84.6 1.7 5.7E-05 43.6 7.1 65 237-302 214-279 (299)
479 2grj_A Dephospho-COA kinase; T 84.6 0.4 1.4E-05 45.0 2.4 25 188-212 11-35 (192)
480 1sxj_E Activator 1 40 kDa subu 84.6 0.36 1.2E-05 49.1 2.2 23 190-212 37-59 (354)
481 3cf0_A Transitional endoplasmi 84.5 0.46 1.6E-05 47.6 2.9 25 188-212 48-72 (301)
482 2qby_A CDC6 homolog 1, cell di 84.4 0.39 1.3E-05 48.9 2.4 25 188-212 44-68 (386)
483 3exa_A TRNA delta(2)-isopenten 84.3 0.39 1.3E-05 48.8 2.2 25 188-212 2-26 (322)
484 1pzn_A RAD51, DNA repair and r 84.1 0.31 1.1E-05 50.3 1.4 27 186-212 128-154 (349)
485 1fnn_A CDC6P, cell division co 84.1 0.43 1.5E-05 48.9 2.5 23 190-212 45-67 (389)
486 3j16_B RLI1P; ribosome recycli 83.9 0.48 1.7E-05 52.6 3.0 24 190-213 379-402 (608)
487 3lv8_A DTMP kinase, thymidylat 83.9 0.48 1.6E-05 46.1 2.6 26 187-212 25-50 (236)
488 4aby_A DNA repair protein RECN 83.8 0.22 7.4E-06 52.2 0.1 23 187-210 59-81 (415)
489 1d1n_A Initiation factor 2; be 83.6 2.2 7.5E-05 35.5 6.1 78 365-444 8-92 (99)
490 3syl_A Protein CBBX; photosynt 83.6 0.51 1.8E-05 46.9 2.8 26 187-212 65-90 (309)
491 4tmk_A Protein (thymidylate ki 83.5 0.51 1.8E-05 45.1 2.6 24 188-211 2-25 (213)
492 3a8t_A Adenylate isopentenyltr 83.5 0.49 1.7E-05 48.5 2.6 25 188-212 39-63 (339)
493 4f4c_A Multidrug resistance pr 83.4 0.49 1.7E-05 57.4 3.0 26 187-212 442-467 (1321)
494 1l8q_A Chromosomal replication 83.2 0.44 1.5E-05 48.0 2.1 25 188-212 36-60 (324)
495 3n70_A Transport activator; si 83.1 0.54 1.9E-05 41.5 2.4 25 188-212 23-47 (145)
496 1wcv_1 SOJ, segregation protei 83.1 1.3 4.4E-05 43.0 5.4 66 235-302 110-182 (257)
497 3cr8_A Sulfate adenylyltranfer 83.1 0.28 9.6E-06 53.9 0.6 26 187-212 367-392 (552)
498 3tmk_A Thymidylate kinase; pho 83.0 0.59 2E-05 44.8 2.8 26 187-212 3-28 (216)
499 3co5_A Putative two-component 83.0 0.52 1.8E-05 41.6 2.3 24 189-212 27-50 (143)
500 3qks_A DNA double-strand break 82.9 0.49 1.7E-05 44.6 2.2 23 188-210 22-44 (203)
No 1
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=7.3e-67 Score=570.43 Aligned_cols=382 Identities=50% Similarity=0.798 Sum_probs=336.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+++++|+++||+|||||||+++|++..+...+.+|+|+++..+.+.+ ++..++|||||||++|..++.+++..+|++++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 57899999999999999999999988877778899999998888877 77899999999999999999999999999999
Q ss_pred EEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHH
Q 008003 267 VVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (581)
Q Consensus 267 VvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~ 346 (581)
|+|++++..+++.+++..+...++|+|+++||+|+.+.+.+++...+...+.....+++.++++++||++|.|+++|+++
T Consensus 81 VVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~ 160 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDA 160 (501)
T ss_dssp EEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHH
T ss_pred EeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhh
Confidence 99999999999999999998899999999999999876555555555444444455666789999999999999999999
Q ss_pred HHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccceEEEEEcccCCcccccCCCCcEE
Q 008003 347 LLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVE 426 (581)
Q Consensus 347 L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~ 426 (581)
|...++.++.+.+++.|+.++|++++.+++.|.++++++.+|+|++||.|++++.+++||+|.+.+|..+++|+||+++.
T Consensus 161 I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~~~kVr~i~~~~g~~v~~a~~g~~V~ 240 (501)
T 1zo1_I 161 ILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVE 240 (501)
T ss_dssp TTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBSSCEEEEECCTTTTSEEEECCSSCSS
T ss_pred hhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccceeEEEEEEecCCCcCcEeccCCcEE
Confidence 98766556667778888999999999999999999999999999999999999999999999988999999999999999
Q ss_pred EeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC--CCCC-CCCcccCEEEEecCcccHHHH
Q 008003 427 IEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEP--SEDV-PKRAEMPVIVKADVQGTVQAV 503 (581)
Q Consensus 427 i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~iiikad~~Gs~eAi 503 (581)
+.|+.+.|.+||.++++.+++.|++++++|++..++.+.. .....++++ +.++ .+.+.+|+|||||++||+|||
T Consensus 241 i~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~ 317 (501)
T 1zo1_I 241 ILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLA---RQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAI 317 (501)
T ss_dssp SEEECSCCCTTEEEEEECSSCTTBCSSCBTTCCCCSHHHH---HHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHH
T ss_pred EeCCCCCCCCCCEEEecCCHHHHHHHHHHHHHHHHHHHHh---hhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHH
Confidence 9999999999999999999999999888776554432211 111111222 1121 356789999999999999999
Q ss_pred HHHHHhcCCCceEeeEEEeccCccchhhhhhhhccCCEEEEecCCCChhHHHHHHHHcCceEEEeeeecc
Q 008003 504 TDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 504 ~~~l~~~~~~~~~~~i~~~~vG~it~~Dv~~A~~~~~~I~~Fnv~~~~~~~~~~a~~~~v~i~~~~ii~~ 573 (581)
.++|.++++++++++|++++||+||++||.+|++++|+|+||||++++++ +++|++.||+|++|+|||-
T Consensus 318 ~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~fnv~~~~~~-~~~a~~~~v~i~~~~iiy~ 386 (501)
T 1zo1_I 318 SDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASA-RKVIEAESLDLRYYSVIYN 386 (501)
T ss_dssp HHHHTTTTCCCSBCCCCCSSSSSSHHHHSTTTCGGGCCEEECSSCCCHHH-HTTSCSSSSCEEESCCCSH
T ss_pred HHHHHhhcccccceEEEEeccCCCCHHHHHHHHhcCCEEEEecCCCCHHH-HHHHHHcCCEEEEeCHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999994
No 2
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=7.2e-67 Score=574.86 Aligned_cols=386 Identities=49% Similarity=0.767 Sum_probs=343.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+++++|+++|++|||||||+++|++..+...+.+|+|+++..+.+.++++..++|||||||++|..++.++++.+|++|+
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 57899999999999999999999999888888999999999988877667899999999999999999999999999999
Q ss_pred EEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHH
Q 008003 267 VVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (581)
Q Consensus 267 VvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~ 346 (581)
|+|++++..+++.+++..+...++|+|+|+||+|+.+.+.......+...+.....+++.++++++||++|.|+++|+++
T Consensus 82 VVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~ 161 (537)
T 3izy_P 82 VVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEA 161 (537)
T ss_dssp ECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHH
T ss_pred EEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHH
Confidence 99999999999999999999999999999999999876666556666655555566777789999999999999999999
Q ss_pred HHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccccceEEEEEcccCCcccccCCCCcEE
Q 008003 347 LLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVE 426 (581)
Q Consensus 347 L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~ 426 (581)
|..+++.+++..+++.|+.++|++++.+++.|++++++|.+|+|++||.+++|..+++||+|.+.+|+.+++|.||++|.
T Consensus 162 I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g~~~~kVr~i~~~~g~~v~~A~~G~~V~ 241 (537)
T 3izy_P 162 TIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSMPVG 241 (537)
T ss_dssp HHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCSSCCEEEEEEEECCCCCSCCSCCSTTCC
T ss_pred HHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeCCceEEEEEEEcCCCCCCcEEcCCCEEE
Confidence 99988888888888899999999999999999999999999999999999999889999999998899999999999999
Q ss_pred EeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhh----hhhh-------------------------------
Q 008003 427 IEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRK----INEE------------------------------- 471 (581)
Q Consensus 427 i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~----~~~~------------------------------- 471 (581)
|.|+.+.|.+||.|+.+++++.||+++++|+++.++.+... +...
T Consensus 242 i~g~~~~~~~Gd~l~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (537)
T 3izy_P 242 IIGWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREK 321 (537)
T ss_dssp CCSSEEEEEEESSCCSCCSSCCCCCCSCCSSSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCEEEecCChHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhhhhccchhhhhhhhhhhhh
Confidence 99999999999999999999999999999877666433210 0000
Q ss_pred hccCCCC--CCCCCCCcccCEEEEecCcccHHHHHHHHHhcCC-CceEeeEEEeccCccchhhhhhhhccCCEEEEecCC
Q 008003 472 RTENLEP--SEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNS-PQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVK 548 (581)
Q Consensus 472 ~~~~~~~--~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~-~~~~~~i~~~~vG~it~~Dv~~A~~~~~~I~~Fnv~ 548 (581)
....... .....+.+.+|+|||||++||+|||.++|.++++ ++|+++|++++||+||++||.+|+++||+|+||||+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG~i~~~Dv~~a~~~~a~i~~fnv~ 401 (537)
T 3izy_P 322 RQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAETFHGVIYGFNVN 401 (537)
T ss_dssp HHHCTTTTCCCCCCCCCCCCBEEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBSCBCHHHHHHHHHHSCCEEESSCC
T ss_pred hhhhhccchhhcccccceeeEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEEEecCCCCCHHHHHHHHhcCCeEEEecCC
Confidence 0000000 0112356899999999999999999999999998 899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHcCceEEEeeeecc
Q 008003 549 SPPTSVSQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 549 ~~~~~~~~~a~~~~v~i~~~~ii~~ 573 (581)
+++++ +++|++.||+|++|+|||-
T Consensus 402 ~~~~~-~~~a~~~~v~i~~~~iiy~ 425 (537)
T 3izy_P 402 AGNVI-QQLAAKKGVKIKLHKIIYR 425 (537)
T ss_dssp BCHHH-HHHHHHHTCCCBCSCSSCC
T ss_pred CCHHH-HHHHHHcCCeEEEeChHHH
Confidence 99999 9999999999999999995
No 3
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=2.4e-54 Score=482.20 Aligned_cols=359 Identities=33% Similarity=0.514 Sum_probs=287.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec----------CC-------eEEEEEeCCCcch
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS----------TG-------ASITFLDTPGHAA 249 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~----------~g-------~~i~liDTpG~~~ 249 (581)
.+.++|+|+||+|||||||+++|++..+...+.+|+|+++....+.+. .+ ..++|||||||++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 467899999999999999999999877665556688888777666431 11 2599999999999
Q ss_pred hhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCC-Ch--------------hhH-----
Q 008003 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAA-DP--------------ERV----- 309 (581)
Q Consensus 250 ~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~-~~--------------~~~----- 309 (581)
|..++.++++.+|++|+|+|+++|+.+++.+.+..+...++|+++|+||+|+... .. ..+
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~ 162 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999642 11 111
Q ss_pred ------Hhhhhhccch------hhhcCCcceEEEEeccCCCChhhHHHHHHHHHHH-h--hcccccCCCcceEEEEEEee
Q 008003 310 ------KNQLGAEGLE------LEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM-M--NLKARVDGPAQAYVVEARLD 374 (581)
Q Consensus 310 ------~~~l~~~~~~------~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~-~--~~~~~~~~~~~~~V~e~~~~ 374 (581)
...+.+.++. +..++..++++++||++|.|+++|+++|...... . ....+++.|+.++|++++.+
T Consensus 163 e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d 242 (594)
T 1g7s_A 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242 (594)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchhhhccccCCCceeEEEEEEEe
Confidence 1112222211 1122456799999999999999999999876542 2 23456788999999999999
Q ss_pred cCCCcEEEEEEeccEEeeCcEEEEccccc----eEEEEEc-----------ccCCcccccCCCCcEEEe--ccCCCCCCC
Q 008003 375 KGRGPLTTAIVKAGTLVCGQHVVVGHEWG----RIRAIRD-----------MVGKSTDKARPAMPVEIE--GLKGLPMAG 437 (581)
Q Consensus 375 ~~~G~v~~~~V~~GtLk~gd~i~~g~~~~----kVk~i~~-----------~~g~~v~~a~~~~~v~i~--gl~~~~~~G 437 (581)
++.|.+++++|.+|+|+.||.|++++..+ +|++|.. .++.+++++.|++.+.+. ||.++ .+|
T Consensus 243 ~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~-~~G 321 (594)
T 1g7s_A 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV-MAG 321 (594)
T ss_dssp TTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB-CTT
T ss_pred CCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC-CCC
Confidence 99999999999999999999999987766 8888864 345678899865555544 67776 899
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEe
Q 008003 438 DDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFV 517 (581)
Q Consensus 438 d~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~ 517 (581)
|+|++++++.++++ +..++.+. .....+.+|+|||||++||+|||.++|.++. +
T Consensus 322 d~l~~~~~~~~~~~------~~~~~~~~---------------~~~~~~~~~~~vkad~~gs~eal~~~l~~~~-----~ 375 (594)
T 1g7s_A 322 SPLRVVTDPEKVRE------EILSEIED---------------IKIDTDEAGVVVKADTLGSLEAVVKILRDMY-----V 375 (594)
T ss_dssp CEEEECSSHHHHHH------HHHHHHHT---------------TSCBCSSSCCEEEESSHHHHHHHHHHHHHTT-----C
T ss_pred CEEEecCCHHHHHH------HHHHHHHh---------------cccccccccEEEEeCCCCCHHHHHHHHHhCC-----C
Confidence 99999999843322 22221110 0113567999999999999999999999984 8
Q ss_pred eEEEeccCccchhhhhhhhcc------CCEEEEecCCCChhHHHHHHHHcCceEEEeeeecc
Q 008003 518 NVVHVGVGSVTQSDVDLAQAC------GACIVGFNVKSPPTSVSQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 518 ~i~~~~vG~it~~Dv~~A~~~------~~~I~~Fnv~~~~~~~~~~a~~~~v~i~~~~ii~~ 573 (581)
+|++++||+||++||.+|+++ +|+|+||||++++++ +++|++.||+|++|+|||-
T Consensus 376 ~v~~~~vg~i~~~dv~~a~~~~~~~~~~a~i~~fnv~~~~~~-~~~a~~~~v~i~~~~iiy~ 436 (594)
T 1g7s_A 376 PIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSA-AQELKNSDIKLFQGNVIYR 436 (594)
T ss_dssp CCSEEEESSBCHHHHHHHHHHHTTCTTSCEEEEESCCBCHHH-HHHTSSSSSEEEEESCHHH
T ss_pred cEEecccCCCCHHHHHHHHhhhccCcCCCEEEEeCCcCCHHH-HHHHHHcCCeEEECCHHHH
Confidence 999999999999999999999 999999999999999 9999999999999999994
No 4
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=100.00 E-value=3.7e-47 Score=414.52 Aligned_cols=286 Identities=16% Similarity=0.150 Sum_probs=200.6
Q ss_pred ceeccCCCCCccc-----cccchHHhhhhh---ccCCccccCCCchhhhHhhcCccccchhhhhhhhhhhhccccccccc
Q 008003 15 VVASKSLKYAPSS-----ITTSAESSCSCL---QGLRYHDVSMKVSLIRCFHASPELLARRRDEDSFGLKTARRESNKGK 86 (581)
Q Consensus 15 ~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~r~a~~Geft~raf~ngk~dl~~~q~e~~~~li~a~~~~~~~~ 86 (581)
..|+.|++|++.. ++|++.+...+| ...|+|+|+|||||||||+||||||+ |||||+|||+|
T Consensus 83 ~~f~~P~s~TgEd~~E~~~HGg~~v~~~~l~~~~~~g~r~A~pGEFt~RAflngk~dL~--qaEav~dli~a-------- 152 (476)
T 3gee_A 83 LVFRAPRSFTAEQMVEFTCHGGPVVVGRVLRLMLDNGCRLAEPGEFTRRAFLNGRIDLL--QAEAIGEMIHA-------- 152 (476)
T ss_dssp EEEBTTBSSSSSCEEEEEEECCHHHHHHHHHHHHHTTCEECCTTHHHHHHHHTTSSCHH--HHHHHHHHHHC--------
T ss_pred EEecCCCCCCCCCeEEEECCCCHHHHHHHHHHHHHCCCeecCCcchhhhhhccCcCcHH--HHHHHHHHHhC--------
Confidence 4688899999954 489998888776 34699999999999999999999999 99999999999
Q ss_pred cccccCCCCCcccccCCCCCCcccccCCCcccccchhhHHHHHHHHhcCCHHHHHHHHHHcccccccCCCCCChhH----
Q 008003 87 FRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDV---- 162 (581)
Q Consensus 87 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~l~g~l~~~~~~l~~~L~~~~~~ie~~~~~~~~d~---- 162 (581)
+|+.|+ ++|+++|.|.++..+..|++.|+.+.+.+|...|+.++|.
T Consensus 153 ---~t~~~~---------------------------~~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~ 202 (476)
T 3gee_A 153 ---RTESAY---------------------------RTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQS 202 (476)
T ss_dssp ---CSHHHH---------------------------HHHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSC
T ss_pred ---CCHHHH---------------------------HHHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCCCcccccchh
Confidence 899999 9999999999999999999999999999986555544331
Q ss_pred HHHHHHHhC---Cceee-ecCCcCCCCCCCCCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCe
Q 008003 163 AELVVMELG---FNVRR-IHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGA 237 (581)
Q Consensus 163 ~~~i~~~~~---~~~~~-l~~~~~~~~~~~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~ 237 (581)
...+...+. ..+.. +.....++..+++++|+|+|+||+|||||+|+|.+.. ..++..+|+|++.....+.+ +|.
T Consensus 203 ~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-~g~ 281 (476)
T 3gee_A 203 RDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH-DKT 281 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE-TTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CCe
Confidence 112221111 11111 1122334556678899999999999999999999875 45778899999999888888 899
Q ss_pred EEEEEeCCCcchhhHHH--------hhccccccEEEEEEeccCCCCh----hHHHHHHHHhhcCCCEEEEEeCCCCCCCC
Q 008003 238 SITFLDTPGHAAFSAMR--------KRGAAVTDIVVLVVAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAAD 305 (581)
Q Consensus 238 ~i~liDTpG~~~~~~~~--------~~~~~~aDivllVvDa~~g~~~----~~~~~i~~~~~~~~piIvViNK~Dl~~~~ 305 (581)
++.||||||++++...+ ..++..+|++|+|+|++++... .+.+.+..+. ++|+++|+||+|+....
T Consensus 282 ~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 282 MFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANA 359 (476)
T ss_dssp EEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTT
T ss_pred EEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCcc
Confidence 99999999998766443 3467899999999999998766 4444444443 78999999999997543
Q ss_pred hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHHH
Q 008003 306 PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~ 352 (581)
.... ..+...+ ..+++++||++|.|+++|+++|.....
T Consensus 360 ~~~~-~~l~~~~--------~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 360 DALI-RAIADGT--------GTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHH-HHHHHHH--------TSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred chhH-HHHHhcC--------CCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 3221 1122110 147999999999999999999987553
No 5
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=100.00 E-value=2.1e-45 Score=399.33 Aligned_cols=283 Identities=19% Similarity=0.236 Sum_probs=211.2
Q ss_pred ceeccCCCCCccc-----cccchHHhhhhh---ccCCccccCCCchhhhHhhcCccccchhhhhhhhhhhhccccccccc
Q 008003 15 VVASKSLKYAPSS-----ITTSAESSCSCL---QGLRYHDVSMKVSLIRCFHASPELLARRRDEDSFGLKTARRESNKGK 86 (581)
Q Consensus 15 ~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~r~a~~Geft~raf~ngk~dl~~~q~e~~~~li~a~~~~~~~~ 86 (581)
..|+.|++|+... +||++.++..+| ...|+|+|+|||||||||+||||||+ |||||+|||+|
T Consensus 75 ~~f~~p~s~TgEd~~E~~~HGg~~v~~~~l~~~~~~g~r~A~pGEFt~RAflngk~dL~--qaEav~dli~a-------- 144 (462)
T 3geh_A 75 LLMKAPRSYTREDVVEFHCHGGIIAVQQVLQLCLESGARLAQPGEFTLRAFLNGRLDLT--QAESIADLVGA-------- 144 (462)
T ss_dssp EEECTTCSSSSSCEEEEEECCSSSHHHHHHHHHHHTTCEECCTTHHHHHHHHTTSCCHH--HHHHHHHHHHC--------
T ss_pred EEEcCCCCCcCCceEEEECCCCHHHHHHHHHHHHHCCCeecCCchhhhhHHhcCCcCHH--HHHHHHHHHhC--------
Confidence 4678888888854 488888877766 34699999999999999999999999 99999999999
Q ss_pred cccccCCCCCcccccCCCCCCcccccCCCcccccchhhHHHHHHHHhcCCHHHHHHHHHHcccccccCCCCCC---h---
Q 008003 87 FRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLS---I--- 160 (581)
Q Consensus 87 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~l~g~l~~~~~~l~~~L~~~~~~ie~~~~~~~---~--- 160 (581)
+|+.|+ ++|+++|.|.++..+..|++.|+++.+.+|...++.+ +
T Consensus 145 ---~t~~~~---------------------------~~a~~~l~g~~~~~~~~~r~~l~~~~a~iEa~iDf~ed~~~~~~ 194 (462)
T 3geh_A 145 ---RSPQAA---------------------------QTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEEDLPPLDD 194 (462)
T ss_dssp ---CSHHHH---------------------------HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTTSSSSSCCCCT
T ss_pred ---CCHHHH---------------------------HHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhccccccCChhhH
Confidence 899999 9999999999999999999999999988884333322 1
Q ss_pred h-HHHHHHHHhCCceee-ecCCcCCCCCCCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCe
Q 008003 161 D-VAELVVMELGFNVRR-IHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGA 237 (581)
Q Consensus 161 d-~~~~i~~~~~~~~~~-l~~~~~~~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~ 237 (581)
+ ....+. .+...+.. +.....+...+.+++|+|+|+||+|||||+|+|.+... .++..+|+|+|+....+.+ +|.
T Consensus 195 ~~~~~~i~-~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~ 272 (462)
T 3geh_A 195 EAIISDIE-NIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV-GGI 272 (462)
T ss_dssp TTHHHHHH-HHHHHHHHHTTTHHHHHHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE-TTE
T ss_pred HHHHHHHH-HHHHHHHHHHHHhhhhhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE-CCE
Confidence 1 111111 11111111 12233345556788999999999999999999998754 4677899999998888887 899
Q ss_pred EEEEEeCCCcchhhHHH--------hhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhH
Q 008003 238 SITFLDTPGHAAFSAMR--------KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV 309 (581)
Q Consensus 238 ~i~liDTpG~~~~~~~~--------~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~ 309 (581)
++.||||||++++.... ..++..+|++++|+|++++...+..+.+..+. +.|+++|+||+|+.......
T Consensus 273 ~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~- 349 (462)
T 3geh_A 273 PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT- 349 (462)
T ss_dssp EEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST-
T ss_pred EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH-
Confidence 99999999987765432 23678999999999999988777766666654 37999999999996432111
Q ss_pred HhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 310 KNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 310 ~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
.+ ..+....+++++||++|.|+++|+++|....
T Consensus 350 --~~-------~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 350 --SL-------EYPENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp --TC-------CCCTTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred --HH-------HHhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 11 1111345899999999999999999998754
No 6
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=100.00 E-value=5.8e-40 Score=358.09 Aligned_cols=282 Identities=19% Similarity=0.223 Sum_probs=214.1
Q ss_pred ceeccCCCCCccc-----cccchHHhhhhh---ccCCccccCCCchhhhHhhcCccccchhhhhhhhhhhhccccccccc
Q 008003 15 VVASKSLKYAPSS-----ITTSAESSCSCL---QGLRYHDVSMKVSLIRCFHASPELLARRRDEDSFGLKTARRESNKGK 86 (581)
Q Consensus 15 ~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~r~a~~Geft~raf~ngk~dl~~~q~e~~~~li~a~~~~~~~~ 86 (581)
.+++.|++|+... .+|+..+....| ...|+|+|+|||||+|||+||||||+ |+|+|+|||+|
T Consensus 95 ~~~~~p~Sft~Ed~ve~~~hGg~~v~~~~l~~l~~~g~r~A~~Geft~raf~nGk~Dl~--qaE~i~dli~a-------- 164 (482)
T 1xzp_A 95 VFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKMDLT--SAEAVRDLIEA-------- 164 (482)
T ss_dssp EEECTTSSSSSSCEEEEEECSCHHHHHHHHHHHHTTTCEECCTTHHHHHHHHTTSSCHH--HHHHHHHHHHC--------
T ss_pred EEEeCCCcCCCCCEeeecCcCcHHHHHHHHHHHHHcCCEeCCCCCcCCcCCCcCCcCHH--HHHHHHHHHhh--------
Confidence 3566778877643 478887777665 34599999999999999999999999 99999999999
Q ss_pred cccccCCCCCcccccCCCCCCcccccCCCcccccchhhHHHHHHHHhcCCHHHHHHHHHHcccccccCCCCCC---hhHH
Q 008003 87 FRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLS---IDVA 163 (581)
Q Consensus 87 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~l~g~l~~~~~~l~~~L~~~~~~ie~~~~~~~---~d~~ 163 (581)
+|+.|+ ++|++++.|.++..+..|++.|+.+.+.+|...++.+ ....
T Consensus 165 ---~t~~~~---------------------------~~a~~~l~g~l~~~~~~~r~~l~~~~~~ie~~idf~eei~~~~~ 214 (482)
T 1xzp_A 165 ---KSETSL---------------------------KLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIETNTG 214 (482)
T ss_dssp ---CSHHHH---------------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCCCHH
T ss_pred ---ccHHHH---------------------------HHHHHhcchhHhHHHHHHHHHHHHHHHHhhhcCCCCccccchHH
Confidence 888888 9999999999999999999999988877762222221 1111
Q ss_pred HHHHHH---hCCceee-ecCCcCCCCCCCCCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeE
Q 008003 164 ELVVME---LGFNVRR-IHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGAS 238 (581)
Q Consensus 164 ~~i~~~---~~~~~~~-l~~~~~~~~~~~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~ 238 (581)
. +... +...+.. +...+.++..+++++|+|+|.||+|||||+|+|.+.. ..+++.++||+|+....+.+ ++.+
T Consensus 215 ~-i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-~g~~ 292 (482)
T 1xzp_A 215 E-VVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-RGIL 292 (482)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-TTEE
T ss_pred H-HHHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-CCeE
Confidence 1 1111 1111111 1122334455677999999999999999999999875 45788999999999999988 7999
Q ss_pred EEEEeCCCcc-hhh--------HHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCC-Chhh
Q 008003 239 ITFLDTPGHA-AFS--------AMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAA-DPER 308 (581)
Q Consensus 239 i~liDTpG~~-~~~--------~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~-~~~~ 308 (581)
+.||||||++ .+. .....++..+|++|+|+|++++...+..+.+..+ .++|+++|+||+|+... +.+.
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~~ 370 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEE 370 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHH
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHHH
Confidence 9999999988 553 2234678899999999999988777666666555 47899999999999643 1111
Q ss_pred HHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 309 VKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 309 ~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
... . .+...+++++||++|+|+++|+++|...
T Consensus 371 ~~~----~------~~~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 371 IKN----K------LGTDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp HHH----H------HTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred HHH----H------hcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 111 1 1122479999999999999999999874
No 7
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.97 E-value=6.3e-31 Score=284.67 Aligned_cols=255 Identities=24% Similarity=0.315 Sum_probs=195.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc-------------------------------ccccccCceeEeeeeEEEeecC
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS-------------------------------LVAKEAGGITQHMGAFVVGMST 235 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~-------------------------------~~~~~~~g~T~d~~~~~~~~~~ 235 (581)
...++|+++|++|+|||||+|+|++.. ......+|+|.+.....+.+ +
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~ 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-E 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-C
Confidence 456899999999999999999995431 11223478999999988887 7
Q ss_pred CeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCC-------hhHHHHHHHHhhcCCC-EEEEEeCCCCCCCC--
Q 008003 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVM-------PQTLEAIAHANAANVP-IVVAINKCDKPAAD-- 305 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~-------~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~-- 305 (581)
+..++|||||||++|...+..+++.+|++|+|+|++++.. +|+.+++..+...++| +|+|+||+|+...+
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 8899999999999999999999999999999999999876 6999999998888998 99999999996432
Q ss_pred hhhHHhhhhhccchhhhcC----CcceEEEEeccCCCChhhHHHH--------HHHHH-HHhhcccccCCCcceEEEEEE
Q 008003 306 PERVKNQLGAEGLELEDWG----GKVQVVEVSAVKKTGLDDLEVA--------LLLQA-EMMNLKARVDGPAQAYVVEAR 372 (581)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~----~~~~ii~iSAktg~gI~eLl~~--------L~~~~-~~~~~~~~~~~~~~~~V~e~~ 372 (581)
..+......+....+..++ ..++++++||++|.|++++.+. |.... .++.+....+.|+...|.+++
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~ 253 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKY 253 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEEEEEEEE
Confidence 2222111111111111222 2468999999999999996651 22222 233333456778888998886
Q ss_pred eecCCCcEEEEEEeccEEeeCcEEEEccc--cceEEEEEcccCCcccccCCCCcEE--EeccCCCC-CCCCeEEEeCC
Q 008003 373 LDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVE--IEGLKGLP-MAGDDIIVVDS 445 (581)
Q Consensus 373 ~~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~kVk~i~~~~g~~v~~a~~~~~v~--i~gl~~~~-~~Gd~~~~v~~ 445 (581)
. +.|++++|+|.+|+|++||.|.+++. ..+|++|.. +++.+++|.||++|. +.|+.... ..|++++...+
T Consensus 254 ~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~-~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~ 328 (439)
T 3j2k_7 254 K--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS-DDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSN 328 (439)
T ss_pred c--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE-CCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCC
Confidence 4 68999999999999999999999654 568899975 778999999999997 55555433 46888886554
No 8
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.97 E-value=6.7e-30 Score=279.96 Aligned_cols=256 Identities=22% Similarity=0.240 Sum_probs=191.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc-------------------------------ccccccCceeEeeeeEEEeecCC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS-------------------------------LVAKEAGGITQHMGAFVVGMSTG 236 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~-------------------------------~~~~~~~g~T~d~~~~~~~~~~g 236 (581)
...+|+++|++|+|||||+|+|++.. ......+|+|.+.....+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 45799999999999999999997541 11223468999998888887 78
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCC-------CChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCChhh
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-------VMPQTLEAIAHANAANV-PIVVAINKCDKPAADPER 308 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g-------~~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~~~~ 308 (581)
..+.|||||||++|...+..+++.+|++|+|+|++++ ...++.+++..+...++ |+|+|+||+|+.+.+...
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 9999999999999999999999999999999999987 56788888888887775 499999999997654333
Q ss_pred HHhhhhhccchhhhcC---CcceEEEEeccCCCChhh---------------HHHHHHHHHHHhh---cccccCCCcceE
Q 008003 309 VKNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDD---------------LEVALLLQAEMMN---LKARVDGPAQAY 367 (581)
Q Consensus 309 ~~~~l~~~~~~~~~~~---~~~~ii~iSAktg~gI~e---------------Ll~~L~~~~~~~~---~~~~~~~~~~~~ 367 (581)
...........+..++ ..++++++||++|+|+++ |++.|....+... +....+.|+...
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~~ 270 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFS 270 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEEE
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEEE
Confidence 2222111111111122 246899999999999985 4455544432221 234567889999
Q ss_pred EEEEEeec---CCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEccc-------CCcccccCCCCcEEEe--cc--C
Q 008003 368 VVEARLDK---GRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMV-------GKSTDKARPAMPVEIE--GL--K 431 (581)
Q Consensus 368 V~e~~~~~---~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~-------g~~v~~a~~~~~v~i~--gl--~ 431 (581)
|.+++... +.|++++|+|.+|+|++||.|.+++ ...+|++|...+ .+.+++|.||+++.+. +. .
T Consensus 271 v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~ 350 (483)
T 3p26_A 271 VLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPE 350 (483)
T ss_dssp EEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCGG
T ss_pred EEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecccc
Confidence 99998876 5899999999999999999999975 456899998654 5889999999999872 22 3
Q ss_pred CCCCCCCeEEEeCC
Q 008003 432 GLPMAGDDIIVVDS 445 (581)
Q Consensus 432 ~~~~~Gd~~~~v~~ 445 (581)
++ ..|++++...+
T Consensus 351 di-~rG~vl~~~~~ 363 (483)
T 3p26_A 351 DI-QNGDLAASVDY 363 (483)
T ss_dssp GC-CTTCEEECTTC
T ss_pred cC-CceEEEEcCCC
Confidence 33 57999886554
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.97 E-value=3.8e-29 Score=278.41 Aligned_cols=337 Identities=22% Similarity=0.261 Sum_probs=245.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc---------------cccccCceeEeeeeEEEeec--C--CeEEEEEeCCCcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL---------------VAKEAGGITQHMGAFVVGMS--T--GASITFLDTPGHA 248 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~---------------~~~~~~g~T~d~~~~~~~~~--~--g~~i~liDTpG~~ 248 (581)
+.++|+|+||+|||||||+++|+.... ......|+|.......+.+. + ++.++|||||||.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 346899999999999999999976311 01123567776655555442 2 3789999999999
Q ss_pred hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cchhhhcCCcc
Q 008003 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GLELEDWGGKV 327 (581)
Q Consensus 249 ~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~~~~~~~~~~ 327 (581)
+|...+.++++.+|++|+|+|++++...++.+.|..+...++|+|+|+||+|+.+.+.++....+... +. ...
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~------~~~ 158 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGL------DPE 158 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCC------CGG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCC------Ccc
Confidence 99999999999999999999999999999999998888889999999999999876665554444332 11 112
Q ss_pred eEEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcccc--ceE
Q 008003 328 QVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW--GRI 405 (581)
Q Consensus 328 ~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~--~kV 405 (581)
+++++||++|.|+++|+++|.... +.+..+++.|+.+.|++++.+++.|.+++++|.+|++++||.|.+.+.. .+|
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~l--p~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v 236 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRI--PPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEV 236 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEEC
T ss_pred cEEEEEeecCCCchHHHHHHHHhc--ccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEee
Confidence 589999999999999999998643 3444557788999999999999999999999999999999999986532 344
Q ss_pred EEEE--cccCCcccccCCCCcEEEe-ccCCCC--CCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCC
Q 008003 406 RAIR--DMVGKSTDKARPAMPVEIE-GLKGLP--MAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSE 480 (581)
Q Consensus 406 k~i~--~~~g~~v~~a~~~~~v~i~-gl~~~~--~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 480 (581)
+.+. ..+...+.++.+|+.+.+. |+.+.. ..||+++..++... ..+. .
T Consensus 237 ~~i~~~~~~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~-------------------------~~l~--~ 289 (600)
T 2ywe_A 237 TEVGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTK-------------------------EPVP--G 289 (600)
T ss_dssp CEEEEESSSEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCS-------------------------SCCS--C
T ss_pred ecccccCCCceECCEEecCceeeeeccccchhhccCCCEEEeCCCccc-------------------------cccC--C
Confidence 4443 2345678899999988774 655332 58999986543200 0000 0
Q ss_pred CCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeEEEeccCccchhhhhhhhccCCEEEEecCCCChhHH-----H
Q 008003 481 DVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSV-----S 555 (581)
Q Consensus 481 ~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i~~~~vG~it~~Dv~~A~~~~~~I~~Fnv~~~~~~~-----~ 555 (581)
.....+.+...+.....+..+.|.++|.++..++..+.+- ..++.+.+.||.+....... .
T Consensus 290 ~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--------------~et~~~l~~g~~~~~~G~lHlei~~e 355 (600)
T 2ywe_A 290 FQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--------------PESSPALGMGFRVGFLGLLHMEIVQE 355 (600)
T ss_dssp CCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--------------EEEETTTEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE--------------ECCccccccceEEEeccHHHHHHHHH
Confidence 1112456667788888999999999999998777666543 13456778888887665542 5
Q ss_pred HHHHHcCceEEEee--eecc
Q 008003 556 QAATQAGIKTRLLG--LLRP 573 (581)
Q Consensus 556 ~~a~~~~v~i~~~~--ii~~ 573 (581)
.+.++.|+.+..-. |+|-
T Consensus 356 rl~re~~~~v~~~~P~V~yr 375 (600)
T 2ywe_A 356 RLEREYGVKIITTAPNVIYR 375 (600)
T ss_dssp HHHHHSCCCEEECCCEECEE
T ss_pred HHHhhcCceEEEEeeeEEEE
Confidence 66667798887755 6664
No 10
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.97 E-value=1e-29 Score=271.93 Aligned_cols=246 Identities=28% Similarity=0.301 Sum_probs=193.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccc----------------cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSL----------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~----------------~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~ 252 (581)
..+|+++|++|+|||||+++|.+... ......|+|.+.....+.. ++..++|||||||++|..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHADYVK 81 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHHHHH
Confidence 46899999999999999999986310 0112578999987776665 678999999999999999
Q ss_pred HHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhh---HHhhhhhccchhhhcC---C
Q 008003 253 MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPER---VKNQLGAEGLELEDWG---G 325 (581)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~---~~~~l~~~~~~~~~~~---~ 325 (581)
.+..+++.+|++|+|+|++++..+++.+++..+...++| +++|+||+|+.+ +.+. ...++.+. +...+ .
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~~~~~~~~~~~~~---l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSEMVELVELEIREL---LTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHHHHHHHHHHHHHH---HHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CHHHHHHHHHHHHHH---HHHcCCCcc
Confidence 999999999999999999999999999999888888999 789999999974 2221 11111111 11121 2
Q ss_pred cceEEEEeccCCCC----------hhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcE
Q 008003 326 KVQVVEVSAVKKTG----------LDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQH 395 (581)
Q Consensus 326 ~~~ii~iSAktg~g----------I~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~ 395 (581)
.++++++||++|.| +++|+++|.... +.+..+.+.|+..+|.+++.++++|++++|+|.+|+|++||.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~--p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~ 235 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI--PVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDE 235 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS--CCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCE
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC--CCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCE
Confidence 46899999999775 788888887633 233344567888999999999999999999999999999999
Q ss_pred EEEcc----ccceEEEEEcccCCcccccCCCCcEEEe--ccC--CCCCCCCeEEEe
Q 008003 396 VVVGH----EWGRIRAIRDMVGKSTDKARPAMPVEIE--GLK--GLPMAGDDIIVV 443 (581)
Q Consensus 396 i~~g~----~~~kVk~i~~~~g~~v~~a~~~~~v~i~--gl~--~~~~~Gd~~~~v 443 (581)
|.+.+ ...+|++|.. +++.+++|.||+++.+. |++ ++ ..|++++..
T Consensus 236 v~~~~~~~~~~~~V~~i~~-~~~~~~~a~aG~~v~~~l~~i~~~~i-~~G~~l~~~ 289 (397)
T 1d2e_A 236 CEFLGHSKNIRTVVTGIEM-FHKSLDRAEAGDNLGALVRGLKREDL-RRGLVMAKP 289 (397)
T ss_dssp EEEEETTEEEEEEEEEEEE-TTEEESEEETTCEEEEEESSCCGGGC-CTTCEEEST
T ss_pred EEEeCCCCCeEEEEEEEEE-CCcccCEecCCCceEEEecccchhcc-CceeEEeCC
Confidence 98643 4568999864 67889999999998774 543 22 579988753
No 11
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.97 E-value=2.9e-30 Score=282.44 Aligned_cols=250 Identities=24% Similarity=0.333 Sum_probs=193.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc-------ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS-------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAA 259 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~-------~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~ 259 (581)
++.++|+++|++|+|||||+++|.+.. ...+..+|+|.+.....+.+ ++..++|||||||++|...+..++.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHHHHHHHHHHHh
Confidence 456899999999999999999998866 34556789999998888887 7899999999999999999999999
Q ss_pred cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhc--CCcceEEEEeccC
Q 008003 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDW--GGKVQVVEVSAVK 336 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~--~~~~~ii~iSAkt 336 (581)
.+|++|+|+|++++..+++.+++..+...++|+|+|+||+|+.+.. .+.....+.+. +... ....+++++||++
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~---l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSI---LQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHH---HHHSSSGGGCCEEECCTTT
T ss_pred hCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHH---HhhhcccccceEEEEECcC
Confidence 9999999999999999999999998888999999999999997421 11122222211 1111 1246899999999
Q ss_pred CCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCC
Q 008003 337 KTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGK 414 (581)
Q Consensus 337 g~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~ 414 (581)
|+|+++|+++|......+....+++.|+..+|.+++..++.|+++++.+.+|++++||.+.+.+ ...+|++|.. +++
T Consensus 173 g~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~~~ 251 (482)
T 1wb1_A 173 GFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQY-FKE 251 (482)
T ss_dssp CTTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCG-GGS
T ss_pred CCCHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEE-CCe
Confidence 9999999999998776443344556678888889999999999999999999999999999864 4568999974 678
Q ss_pred cccccCCCCcEEEe--ccCCC-CCCCCeEE
Q 008003 415 STDKARPAMPVEIE--GLKGL-PMAGDDII 441 (581)
Q Consensus 415 ~v~~a~~~~~v~i~--gl~~~-~~~Gd~~~ 441 (581)
.+++|.||+++.+. |+... ...||+++
T Consensus 252 ~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 252 SVMEAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp CBCCCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred EeeEecCCCEEEEEecCCCHhhccccceEe
Confidence 99999999998763 65432 25788883
No 12
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.97 E-value=1.2e-28 Score=274.99 Aligned_cols=338 Identities=22% Similarity=0.238 Sum_probs=238.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc---------------cccccCceeEeeeeEEEeec----CCeEEEEEeCCCcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL---------------VAKEAGGITQHMGAFVVGMS----TGASITFLDTPGHA 248 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~---------------~~~~~~g~T~d~~~~~~~~~----~g~~i~liDTpG~~ 248 (581)
+.++|+|+||+|||||||+++|+.... ......|+|.......+.+. .++.++|||||||.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 346899999999999999999976311 11124677877766666552 14789999999999
Q ss_pred hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcce
Q 008003 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQ 328 (581)
Q Consensus 249 ~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ 328 (581)
+|...+.++++.+|++|+|+|++++...++...|..+...++|+|+|+||+|+.+.+.+.....+.+.. . . ...+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~l-g---~-~~~~ 157 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIV-G---I-DATD 157 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHT-C---C-CCTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHh-C---C-Ccce
Confidence 999999999999999999999999999999999988888899999999999998766555444443221 0 0 1125
Q ss_pred EEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEccc--cceEE
Q 008003 329 VVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIR 406 (581)
Q Consensus 329 ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~--~~kVk 406 (581)
++++||++|.|+++|+++|.... +.+..+++.|+.+.|+++..+++.|.++++++.+|+|+.||.+.+.+. ..+|.
T Consensus 158 vi~vSAktg~GI~~Ll~~I~~~l--p~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~ 235 (599)
T 3cb4_D 158 AVRCSAKTGVGVQDVLERLVRDI--PPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNAD 235 (599)
T ss_dssp CEEECTTTCTTHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECC
T ss_pred EEEeecccCCCchhHHHHHhhcC--CCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEe
Confidence 89999999999999999998643 344456778999999999999999999999999999999999998643 33444
Q ss_pred EEE--cccCCcccccCCCCcEEEe-ccCCCC--CCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCC
Q 008003 407 AIR--DMVGKSTDKARPAMPVEIE-GLKGLP--MAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSED 481 (581)
Q Consensus 407 ~i~--~~~g~~v~~a~~~~~v~i~-gl~~~~--~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (581)
.+. ..++..+.++.+|+.+.+. |+.++. ..||+++..++.. . ..+. ..
T Consensus 236 ~i~~~~~~~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~--~-----------------------~~l~--~~ 288 (599)
T 3cb4_D 236 RLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPA--E-----------------------KALP--GF 288 (599)
T ss_dssp EEEEESSSEEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCC--S-----------------------SCCT--TC
T ss_pred eeeeccCCceECCEEcCCCeeEeeccccccccCccCCEeeecCCcc--c-----------------------cccc--cc
Confidence 442 2346678999999988774 655322 6899998654320 0 0000 01
Q ss_pred CCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeEEEeccCccchhhhhhhhccCCEEEEecCCCChhHH-----HH
Q 008003 482 VPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSV-----SQ 556 (581)
Q Consensus 482 ~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i~~~~vG~it~~Dv~~A~~~~~~I~~Fnv~~~~~~~-----~~ 556 (581)
....+.+...+.....+..+.+.++|+++..+...+.+- ..++.+.+.||.+...-... ..
T Consensus 289 ~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--------------~et~~~l~~gfr~g~lG~lhlei~~er 354 (599)
T 3cb4_D 289 KKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--------------PESSSALGFGFRCGFLGLLHMEIIQER 354 (599)
T ss_dssp CCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--------------EEEETTTEEEEEEEESSHHHHHHHHHH
T ss_pred cCCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--------------eccccccccceEEEeccHHHHHHHHHH
Confidence 112344555566667778999999999998776655542 24456778888887766532 45
Q ss_pred HHHHcCceEEEee--eecc
Q 008003 557 AATQAGIKTRLLG--LLRP 573 (581)
Q Consensus 557 ~a~~~~v~i~~~~--ii~~ 573 (581)
+.++.|+.+..-. |+|-
T Consensus 355 l~~e~~~~~~~~~P~V~yr 373 (599)
T 3cb4_D 355 LEREYDLDLITTAPTVVYE 373 (599)
T ss_dssp HHHTSCCCEEECCCEECEE
T ss_pred HHHHcCceEEEEeeeEEEE
Confidence 6666688887654 6664
No 13
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.96 E-value=9.1e-30 Score=272.92 Aligned_cols=248 Identities=29% Similarity=0.321 Sum_probs=193.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc--------ccc---------ccccCceeEeeeeEEEeecCCeEEEEEeCCCcch
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT--------SLV---------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~--------~~~---------~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~ 249 (581)
+..++|+++|++|+|||||+++|.+. .+. ....+|+|.+.....+.. ++..++|||||||++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD 87 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHH
Confidence 34579999999999999999999873 111 112468888887777765 678999999999999
Q ss_pred hhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhh---HHhhhhhccchhhhcC-
Q 008003 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPER---VKNQLGAEGLELEDWG- 324 (581)
Q Consensus 250 ~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~---~~~~l~~~~~~~~~~~- 324 (581)
|...+..++..+|++|+|+|++++...++.+++..+...++| +++|+||+|+.+ +.+. ....+... +...+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~~~~~~~~~~~~~~~---l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDL---LNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-CHHHHHHHHHHHHHH---HHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-cHHHHHHHHHHHHHH---HHHhcc
Confidence 999999999999999999999999999999999988888999 899999999974 2221 11111111 11121
Q ss_pred --CcceEEEEeccCCCC------------------hhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEE
Q 008003 325 --GKVQVVEVSAVKKTG------------------LDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAI 384 (581)
Q Consensus 325 --~~~~ii~iSAktg~g------------------I~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~ 384 (581)
...+++++||++|.| +++|+++|.... +.+..+.+.|+..+|.+++.++++|++++|+
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l--p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~ 241 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI--PTPVRDVDKPFLMPVEDVFTITGRGTVATGR 241 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS--CCCCCCCSSCCEEECCEEEEETTTEEEEEEE
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc--CCCCCCCCCCcEEEEEEEEEcCCCceEEEEE
Confidence 246899999999987 677777776532 2233445778889999999999999999999
Q ss_pred EeccEEeeCcEEEEccc-----cceEEEEEcccCCcccccCCCCcEEEe--ccC--CCCCCCCeEEEe
Q 008003 385 VKAGTLVCGQHVVVGHE-----WGRIRAIRDMVGKSTDKARPAMPVEIE--GLK--GLPMAGDDIIVV 443 (581)
Q Consensus 385 V~~GtLk~gd~i~~g~~-----~~kVk~i~~~~g~~v~~a~~~~~v~i~--gl~--~~~~~Gd~~~~v 443 (581)
|.+|+|++||.|.+.+. ..+|++|.. +++.+++|.||+.+.+. |++ ++ ..|++++..
T Consensus 242 v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~-~~~~~~~a~aG~~v~~~l~g~~~~~i-~~G~~l~~~ 307 (405)
T 2c78_A 242 IERGKVKVGDEVEIVGLAPETRKTVVTGVEM-HRKTLQEGIAGDNVGVLLRGVSREEV-ERGQVLAKP 307 (405)
T ss_dssp CCBSEEETTCEEEEESSSSSCEEEEEEEEEE-TTEEESEEETTCEEEEEESSCCTTTC-CTTCEEEST
T ss_pred EecccccCCCEEEEeCCCCCeeeEEEEEEEE-CCcccCEEcCCCEEEEEECCCcHhhc-CceEEEEcC
Confidence 99999999999987543 568999864 67899999999998775 543 22 579998754
No 14
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.96 E-value=4.3e-29 Score=264.32 Aligned_cols=236 Identities=19% Similarity=0.215 Sum_probs=187.3
Q ss_pred EEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEec
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa 270 (581)
+|+++|++|+|||||+++|. ..|+|.+.....+.+ ++..++|||||||++|...+..+++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECS-SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEec-CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 89999999999999999998 567888888888877 77899999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHhhcCCCE-EEEEe-CCCCCCCCh-hhHHhhhhhccchhhhcC-CcceEEE--EeccC---CCChh
Q 008003 271 DDGVMPQTLEAIAHANAANVPI-VVAIN-KCDKPAADP-ERVKNQLGAEGLELEDWG-GKVQVVE--VSAVK---KTGLD 341 (581)
Q Consensus 271 ~~g~~~~~~~~i~~~~~~~~pi-IvViN-K~Dl~~~~~-~~~~~~l~~~~~~~~~~~-~~~~ii~--iSAkt---g~gI~ 341 (581)
+.+..+|+.+++..+...++|. |+++| |+|+ +... +.....+.+. +...+ ..+++++ +||++ |.|++
T Consensus 93 ~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~---l~~~~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 93 PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVI---TSGTVLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHH---TTTSTTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHH---HHhcCCCceEEEecccccccCcCCCCHH
Confidence 8899999999999888889997 99999 9999 4211 1111222221 11111 3468999 99999 99999
Q ss_pred hHHHHHHHHHHHhhcc-cc-cCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCccc
Q 008003 342 DLEVALLLQAEMMNLK-AR-VDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTD 417 (581)
Q Consensus 342 eLl~~L~~~~~~~~~~-~~-~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~ 417 (581)
+|+++|....+.+... .+ ...|+..++.+++..++.|++++++|.+|++++||.|.+.+ ...+|++|.. +++.++
T Consensus 169 ~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~~~~v~ 247 (370)
T 2elf_A 169 ELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQS-HDVDID 247 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEE-TTEEES
T ss_pred HHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEE-CCCCcc
Confidence 9999998765543211 11 23445667899999999999999999999999999999865 4678999964 678999
Q ss_pred ccCCCCcEEEe--ccC--CCCCCCCeEEE
Q 008003 418 KARPAMPVEIE--GLK--GLPMAGDDIIV 442 (581)
Q Consensus 418 ~a~~~~~v~i~--gl~--~~~~~Gd~~~~ 442 (581)
+|.||+++.+. |++ ++ ..||+++.
T Consensus 248 ~a~aGd~v~i~l~gv~~~~i-~~Gdvl~~ 275 (370)
T 2elf_A 248 SAPAGTRVGMRLKNVQAKDI-ERGFIISD 275 (370)
T ss_dssp EEETTCEEEEEEESCCGGGC-CTTCEEES
T ss_pred EEcCCCcceEEEeccCHHHc-CCceEEEC
Confidence 99999999875 432 23 58999986
No 15
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.9e-30 Score=287.66 Aligned_cols=253 Identities=23% Similarity=0.207 Sum_probs=172.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc-------------------------------ccccccCceeEeeeeEEEeecC
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS-------------------------------LVAKEAGGITQHMGAFVVGMST 235 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~-------------------------------~~~~~~~g~T~d~~~~~~~~~~ 235 (581)
...++|+++|++|+|||||+|+|++.. ......+|+|++.....+.+ +
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 345789999999999999999996421 11122568999999888887 7
Q ss_pred CeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCC-------ChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChh
Q 008003 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-------MPQTLEAIAHANAANVP-IVVAINKCDKPAADPE 307 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-------~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~ 307 (581)
+..++|||||||++|...+..++..+|++|||||++++. ..++.+++..+...++| +|+|+||+|+.+++..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHH
Confidence 899999999999999999999999999999999999854 88999999998888997 9999999999765544
Q ss_pred hHHhhhhhccchh-hhcC---CcceEEEEeccCCCChh--------------hHHHHHHHHHHHhhcccccCCCcceEEE
Q 008003 308 RVKNQLGAEGLEL-EDWG---GKVQVVEVSAVKKTGLD--------------DLEVALLLQAEMMNLKARVDGPAQAYVV 369 (581)
Q Consensus 308 ~~~~~l~~~~~~~-~~~~---~~~~ii~iSAktg~gI~--------------eLl~~L~~~~~~~~~~~~~~~~~~~~V~ 369 (581)
.......+....+ ...+ ..++++++||++|.|+. .|++.|.. ...+....+.|+..+|.
T Consensus 334 ~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~---~~pp~~~~~~p~r~~v~ 410 (592)
T 3mca_A 334 RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQ---LVPPEKPYRKPLRLSID 410 (592)
T ss_dssp HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHT---SCCCSCTTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHh---hccccccccccchheee
Confidence 3322222211111 1111 24689999999999998 68887764 23344456778999999
Q ss_pred EEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCccc-ccCCCCcEEE--eccCCC-CCCCCeEEEe
Q 008003 370 EARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTD-KARPAMPVEI--EGLKGL-PMAGDDIIVV 443 (581)
Q Consensus 370 e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~-~a~~~~~v~i--~gl~~~-~~~Gd~~~~v 443 (581)
+++.. +.|++++|+|.+|+|++||.|.+.+ ...+|++|.. +++.+. +|.||++|.+ .|+... -..|++++..
T Consensus 411 ~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~-~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~ 488 (592)
T 3mca_A 411 DVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIR-NSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNY 488 (592)
T ss_dssp EEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEEC-SSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECS
T ss_pred EEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEE-cCccCcceecCCCEEEEEEccccccccceEEEeccC
Confidence 99999 9999999999999999999999954 4678999985 678999 9999999975 354321 1579998865
Q ss_pred CC
Q 008003 444 DS 445 (581)
Q Consensus 444 ~~ 445 (581)
.+
T Consensus 489 ~~ 490 (592)
T 3mca_A 489 EN 490 (592)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 16
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-29 Score=282.66 Aligned_cols=257 Identities=22% Similarity=0.250 Sum_probs=194.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccccc-------------------------------ccCceeEeeeeEEEeecC
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAK-------------------------------EAGGITQHMGAFVVGMST 235 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~-------------------------------~~~g~T~d~~~~~~~~~~ 235 (581)
...++|+++|++|+|||||+|+|++...... ..+|+|.+.....+.. .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-S
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-C
Confidence 4578999999999999999999986532211 1368999999888887 7
Q ss_pred CeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCC-------CChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChh
Q 008003 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-------VMPQTLEAIAHANAANVP-IVVAINKCDKPAADPE 307 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g-------~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~ 307 (581)
+..++|||||||++|...+..+++.+|++|+|||+++| ...++.+++..+...++| +|+|+||+|+.+.+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 89999999999999999999999999999999999875 467899998888888876 9999999999864433
Q ss_pred hHHhhhhhccchhhhcC---CcceEEEEeccCCCChhhHHH-----------HHHHHHHHh--h-----cccccCCCcce
Q 008003 308 RVKNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDDLEV-----------ALLLQAEMM--N-----LKARVDGPAQA 366 (581)
Q Consensus 308 ~~~~~l~~~~~~~~~~~---~~~~ii~iSAktg~gI~eLl~-----------~L~~~~~~~--~-----~~~~~~~~~~~ 366 (581)
............+..++ ..++++++||++|.|++++.. .|....+.. . +....+.|+..
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~ 403 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 403 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEE
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhh
Confidence 32221111111112222 246899999999999987632 122222222 1 12235678888
Q ss_pred EEEEEEeec---CCCcEEEEEEeccEEeeCcEEEEccc--cceEEEEEccc-------CCcccccCCCCcEEE--ecc--
Q 008003 367 YVVEARLDK---GRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMV-------GKSTDKARPAMPVEI--EGL-- 430 (581)
Q Consensus 367 ~V~e~~~~~---~~G~v~~~~V~~GtLk~gd~i~~g~~--~~kVk~i~~~~-------g~~v~~a~~~~~v~i--~gl-- 430 (581)
+|.+++... +.|++++|+|.+|+|++||.|.+++. ..+|++|...+ ++.+.+|.||++|.+ .+.
T Consensus 404 ~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~ 483 (611)
T 3izq_1 404 SVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP 483 (611)
T ss_dssp ECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCT
T ss_pred heeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeeeccH
Confidence 899998877 58999999999999999999999754 56799998653 578999999999988 233
Q ss_pred CCCCCCCCeEEEeCC
Q 008003 431 KGLPMAGDDIIVVDS 445 (581)
Q Consensus 431 ~~~~~~Gd~~~~v~~ 445 (581)
.++ ..|++++...+
T Consensus 484 ~di-~rGdvl~~~~~ 497 (611)
T 3izq_1 484 EDI-QNGDLAASVDY 497 (611)
T ss_dssp TSC-CTTCEEBCSTT
T ss_pred hhC-cceEEccCCCC
Confidence 232 57999886544
No 17
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.96 E-value=5.9e-29 Score=268.99 Aligned_cols=253 Identities=23% Similarity=0.211 Sum_probs=190.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccccc---------------------------------ccccCceeEeeeeEEEeec
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV---------------------------------AKEAGGITQHMGAFVVGMS 234 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~---------------------------------~~~~~g~T~d~~~~~~~~~ 234 (581)
..++|+++|++|+|||||+|+|++.... .....|+|.+.....+..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~- 101 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST- 101 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-
Confidence 3479999999999999999999754310 001246777777777766
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhhHHhhh
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQL 313 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~~~~~l 313 (581)
++..++|||||||++|...+..++..+|++|+|+|++++..+++.+++..+...+.| +|+|+||+|+.+.+.+.+....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 788999999999999999999999999999999999999999999998888777875 9999999999865443322211
Q ss_pred hhccchhhhcC---CcceEEEEeccCCCChhh------------HHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCC
Q 008003 314 GAEGLELEDWG---GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRG 378 (581)
Q Consensus 314 ~~~~~~~~~~~---~~~~ii~iSAktg~gI~e------------Ll~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G 378 (581)
.+....+..++ ...+++++||++|.|+++ |++.|.. +..+....+.|+...|..++...+.|
T Consensus 182 ~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~---i~~~~~~~~~~~~~~v~~v~~~~~~~ 258 (434)
T 1zun_B 182 ADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILET---VEIASDRNYTDLRFPVQYVNRPNLNF 258 (434)
T ss_dssp HHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHH---SCCTTCCCSSSCEEECCEEECSSSSC
T ss_pred HHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhc---CCCcccCCCCCcEEEEEEEeccCCCc
Confidence 11111122222 346899999999999998 4444332 22233345667888888877666667
Q ss_pred cEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEEeccCCCC-CCCCeEEEeCC
Q 008003 379 PLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP-MAGDDIIVVDS 445 (581)
Q Consensus 379 ~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~-~~Gd~~~~v~~ 445 (581)
..+.|+|.+|+|++||.|.+++ ...+|++|.. ++..+++|.||+++.+......+ ..||+++...+
T Consensus 259 ~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~~~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 259 RGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVT-FEGELEQAGPGQAVTLTMEDEIDISRGDLLVHADN 327 (434)
T ss_dssp CEEEEECCBSCEETTCEEEETTTCCEEEEEEEEE-TTEEESEECTTCEEEEEESSCCCCCTTCEEEETTS
T ss_pred eEEEEEEecceEeCCCEEEEecCCeEEEEEEEEE-cCcceeEecCCCEEEEEeCCccccCCccEEECCCC
Confidence 7789999999999999999965 5679999986 45689999999999987665433 58999987654
No 18
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.96 E-value=1.6e-29 Score=275.76 Aligned_cols=253 Identities=25% Similarity=0.306 Sum_probs=171.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc--c-----------------------------cccccCceeEeeeeEEEeecCC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS--L-----------------------------VAKEAGGITQHMGAFVVGMSTG 236 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~--~-----------------------------~~~~~~g~T~d~~~~~~~~~~g 236 (581)
..++|+++||+|+|||||+++|+... + ......|+|.+.....+.+ ++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~ 120 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EH 120 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SS
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CC
Confidence 34799999999999999999996421 1 0112468899888777877 78
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCC-------ChhHHHHHHHHhhcCCC-EEEEEeCCCCCCC--Ch
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-------MPQTLEAIAHANAANVP-IVVAINKCDKPAA--DP 306 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-------~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~--~~ 306 (581)
..++|||||||++|..++..+++.+|++|+|||++++. ..|+.+++..+...++| +|+|+||+|+... +.
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 99999999999999999999999999999999999975 36899999888888998 9999999999643 23
Q ss_pred hhHHhhhhhccchhhhc-C----CcceEEEEeccCCCChhhHHH----------HHHHHHH-HhhcccccCCCcceEEEE
Q 008003 307 ERVKNQLGAEGLELEDW-G----GKVQVVEVSAVKKTGLDDLEV----------ALLLQAE-MMNLKARVDGPAQAYVVE 370 (581)
Q Consensus 307 ~~~~~~l~~~~~~~~~~-~----~~~~ii~iSAktg~gI~eLl~----------~L~~~~~-~~~~~~~~~~~~~~~V~e 370 (581)
+++.....+....+... + ..++++++||++|.|++++++ .|....+ ++.+..+.+.|+..+|.+
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~ 280 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIAS 280 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCE
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEE
Confidence 32221111111111111 1 146899999999999987552 1222222 222333457788888888
Q ss_pred EEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEE--ec-cCCCCCCCCeEEEeC
Q 008003 371 ARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEI--EG-LKGLPMAGDDIIVVD 444 (581)
Q Consensus 371 ~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i--~g-l~~~~~~Gd~~~~v~ 444 (581)
++. +.|++++|+|.+|+|++||.|.+++ ...+|++|....++.+++|.||+++.+ .| ..++ ..|++++...
T Consensus 281 ~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g~~~~i-~rG~vl~~~~ 356 (467)
T 1r5b_A 281 KYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDV-QTGYVLTSTK 356 (467)
T ss_dssp EEE--SSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEESCCTTC-CTTCEEECSS
T ss_pred EEe--CCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEeccHhhC-CceEEEeCCC
Confidence 865 4789999999999999999999954 567999998755889999999999987 45 2222 6899998654
No 19
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.96 E-value=5.2e-29 Score=274.72 Aligned_cols=335 Identities=17% Similarity=0.182 Sum_probs=236.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc------------------c----cccccCceeEeeeeEEEeecCCeEEEEEeCC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS------------------L----VAKEAGGITQHMGAFVVGMSTGASITFLDTP 245 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~------------------~----~~~~~~g~T~d~~~~~~~~~~g~~i~liDTp 245 (581)
+.++|+|+|++|+|||||+|+|+... . .....+|+|.+.....+.+ +++.++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 45799999999999999999996210 0 1112367788777788887 78999999999
Q ss_pred CcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhh-ccchh----
Q 008003 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGA-EGLEL---- 320 (581)
Q Consensus 246 G~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~-~~~~~---- 320 (581)
||.+|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+.......+.+ .+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~ 170 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVT 170 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceeee
Confidence 9999999999999999999999999999999999999999889999999999999976654443333221 10000
Q ss_pred --------------------------------------------------------------------------hhcCCc
Q 008003 321 --------------------------------------------------------------------------EDWGGK 326 (581)
Q Consensus 321 --------------------------------------------------------------------------~~~~~~ 326 (581)
-..+..
T Consensus 171 ~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 250 (528)
T 3tr5_A 171 WPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGEL 250 (528)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTSE
T ss_pred cccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCce
Confidence 001123
Q ss_pred ceEEEEeccCCCChhhHHHHHHHHHHHhhccc-------ccCCCcceEEEEEEe--ec-CCCcEEEEEEeccEEeeCcEE
Q 008003 327 VQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-------RVDGPAQAYVVEARL--DK-GRGPLTTAIVKAGTLVCGQHV 396 (581)
Q Consensus 327 ~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~-------~~~~~~~~~V~e~~~--~~-~~G~v~~~~V~~GtLk~gd~i 396 (581)
+|++++||++|.|+++|+++|......+.... +.+.|+.++|+.+.. ++ ++|.++.++|.+|+|+.|+.|
T Consensus 251 ~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v 330 (528)
T 3tr5_A 251 TPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKA 330 (528)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETTEEE
T ss_pred eEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCCCEE
Confidence 48999999999999999999987543322111 124788899998764 77 889999999999999999999
Q ss_pred EEcccc--ceEEEE---EcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008003 397 VVGHEW--GRIRAI---RDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEE 471 (581)
Q Consensus 397 ~~g~~~--~kVk~i---~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~ 471 (581)
...+.. .+|..+ .+.+...+++|.||+.+.+.++.++ ..||+++.-.+ +
T Consensus 331 ~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~-~~GDtl~~~~~------~------------------- 384 (528)
T 3tr5_A 331 YHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTI-QIGDTFTQGER------F------------------- 384 (528)
T ss_dssp EETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSC-CTTCEEESSCC------C-------------------
T ss_pred EecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCC-ccCCEEcCCCC------c-------------------
Confidence 996543 344443 4556778999999999999998876 68999984110 0
Q ss_pred hccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeEEEeccCccchhhhhhhhccCCEEEEecCCCCh
Q 008003 472 RTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPP 551 (581)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i~~~~vG~it~~Dv~~A~~~~~~I~~Fnv~~~~ 551 (581)
.++ .+....+.+..-|.+...+..+.+..+|.+|..+.. ..+..- ..++..|+++==...-
T Consensus 385 ---~~~--~~~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~-~~~~~~-------------~~~~~~il~~~G~lhl 445 (528)
T 3tr5_A 385 ---KFT--GIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGA-TQLFRP-------------LDSNELILGAVGLLQF 445 (528)
T ss_dssp ---CBC--CCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-CEEEEE-------------TTCCCEEEEESSTHHH
T ss_pred ---ccC--CCCCCCCCEEEEEEECChhHHHHHHHHHHHHHhcCC-eEEEEc-------------CCCCCEEEEEEcHHHH
Confidence 000 000012345555677888888888888888876542 222221 1134555554222222
Q ss_pred hHH-HHHHHHcCceEEEe
Q 008003 552 TSV-SQAATQAGIKTRLL 568 (581)
Q Consensus 552 ~~~-~~~a~~~~v~i~~~ 568 (581)
+++ ..+..+.||.+..-
T Consensus 446 ev~~~rL~~ey~v~v~~~ 463 (528)
T 3tr5_A 446 DVVAYRLENEYNVKCVYE 463 (528)
T ss_dssp HHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHHHhCcEEEEe
Confidence 332 45666677776653
No 20
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.96 E-value=4.8e-29 Score=269.73 Aligned_cols=250 Identities=28% Similarity=0.376 Sum_probs=183.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc--cc-----------------------------ccccCceeEeeeeEEEeecCC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS--LV-----------------------------AKEAGGITQHMGAFVVGMSTG 236 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~--~~-----------------------------~~~~~g~T~d~~~~~~~~~~g 236 (581)
..++|+++|++|+|||||+++|++.. +. ....+|+|.+.....+.+ .+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence 45799999999999999999997641 11 112468999988877776 78
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCC-------CChhHHHHHHHHhhcCC-CEEEEEeCCCCCCC--Ch
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-------VMPQTLEAIAHANAANV-PIVVAINKCDKPAA--DP 306 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g-------~~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~--~~ 306 (581)
..++|||||||++|...+..+++.+|++|+|+|++++ +..++.+++..+...++ |+|+|+||+|+.+. +.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 8999999999999999999999999999999999998 77799999888887787 49999999999763 22
Q ss_pred hhHHhhhhhccchhhhcC---CcceEEEEeccCCCChhh------------HHHHHHHHHHHhhcccccCCCcceEEEEE
Q 008003 307 ERVKNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVEA 371 (581)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~---~~~~ii~iSAktg~gI~e------------Ll~~L~~~~~~~~~~~~~~~~~~~~V~e~ 371 (581)
++......+....+...+ ..++++++||++|+|+.+ |+++|.. ...+....+.|+..+|.++
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~---~~~p~~~~~~~~~~~v~~v 240 (435)
T 1jny_A 164 KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ---LELPPKPVDKPLRIPIQDV 240 (435)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT---CCCCCCGGGSCCBEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc---cCCCCCCCCCCeEEEEEEE
Confidence 222111111111111221 146899999999999975 4444322 1222223456788889999
Q ss_pred EeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEEe--cc--CCCCCCCCeEEEe
Q 008003 372 RLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIE--GL--KGLPMAGDDIIVV 443 (581)
Q Consensus 372 ~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i~--gl--~~~~~~Gd~~~~v 443 (581)
+..++.|++++|+|.+|+|++||.|.+.+ ...+|++|.. +++.+++|.||+++.+. |+ .++ ..||+++..
T Consensus 241 ~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~~~~~~~a~aG~~v~~~l~g~~~~~i-~~Gd~l~~~ 316 (435)
T 1jny_A 241 YSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIET-HHTKMDKAEPGDNIGFNVRGVEKKDI-KRGDVVGHP 316 (435)
T ss_dssp EEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEE-TTEEESEECTTCEEEEEEESSCGGGC-CTTCEEECT
T ss_pred EEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEE-CCcEEeEEcCCCEEEEEEecCCHHHc-CCccEecCC
Confidence 99999999999999999999999999864 5678999965 67899999999999873 43 334 589999854
No 21
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.96 E-value=4.4e-29 Score=271.60 Aligned_cols=255 Identities=21% Similarity=0.250 Sum_probs=192.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc--c-----------------------------cccccCceeEeeeeEEEeecCC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS--L-----------------------------VAKEAGGITQHMGAFVVGMSTG 236 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~--~-----------------------------~~~~~~g~T~d~~~~~~~~~~g 236 (581)
..++|+++|++|+|||||+|+|++.. + ......|+|.+.....+.. ++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 34789999999999999999997641 1 0112378999998888877 78
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCCh-------hHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhh
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMP-------QTLEAIAHANAANVP-IVVAINKCDKPAADPER 308 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~-------~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~ 308 (581)
..++|||||||++|...+..++..+|++|+|+|++++..+ ++.+++..+...++| +|+|+||+|+.+++.++
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~ 164 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESR 164 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHH
Confidence 8999999999999999999999999999999999987655 888888888778887 99999999997544333
Q ss_pred HHhhhhhccchhhhcC---CcceEEEEeccCCCChhhHHH--------------------HHHHHHH-HhhcccccCCCc
Q 008003 309 VKNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDDLEV--------------------ALLLQAE-MMNLKARVDGPA 364 (581)
Q Consensus 309 ~~~~l~~~~~~~~~~~---~~~~ii~iSAktg~gI~eLl~--------------------~L~~~~~-~~~~~~~~~~~~ 364 (581)
+.....+....+..++ ..++++++||++|.|+.++.+ .|....+ +..+....+.|+
T Consensus 165 ~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~~~p~ 244 (458)
T 1f60_A 165 FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKPL 244 (458)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhccCCCcccCCCCc
Confidence 2221111111111222 136899999999999975422 1222222 223333456788
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEEe--ccCCCC-CCCCe
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIE--GLKGLP-MAGDD 439 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i~--gl~~~~-~~Gd~ 439 (581)
..+|.+++..++.|++++|+|.+|+++.||.|.+.+ ...+|++|.. +++.+.+|.||+++.+. |+.... ..|++
T Consensus 245 r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~v 323 (458)
T 1f60_A 245 RLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEM-HHEQLEQGVPGDNVGFNVKNVSVKEIRRGNV 323 (458)
T ss_dssp EEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEE-TTEECSCBCTTCEEEEEESSCCTTTSCTTCE
T ss_pred EEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEE-CCeEEEEEcCCCEEEEEEcCCcccccCceeE
Confidence 999999999999999999999999999999999864 4678999975 56789999999998774 553222 57999
Q ss_pred EEEeC
Q 008003 440 IIVVD 444 (581)
Q Consensus 440 ~~~v~ 444 (581)
++...
T Consensus 324 l~~~~ 328 (458)
T 1f60_A 324 CGDAK 328 (458)
T ss_dssp EEETT
T ss_pred EecCC
Confidence 88754
No 22
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.96 E-value=1.8e-28 Score=263.23 Aligned_cols=252 Identities=23% Similarity=0.268 Sum_probs=187.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc---cccccccCceeEeeeeEEEeecC----------------------CeEEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT---SLVAKEAGGITQHMGAFVVGMST----------------------GASITFL 242 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~---~~~~~~~~g~T~d~~~~~~~~~~----------------------g~~i~li 242 (581)
..++|+++||+|+|||||+++|.+. .......+|+|.+.......+.. ...++||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 3478999999999999999999854 33444567888876654433210 1689999
Q ss_pred eCCCcchhhHHHhhccccccEEEEEEeccCCC-ChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCCh-hhHHhhhhhccch
Q 008003 243 DTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEAIAHANAANV-PIVVAINKCDKPAADP-ERVKNQLGAEGLE 319 (581)
Q Consensus 243 DTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~~-~~~~~~l~~~~~~ 319 (581)
|||||++|...+.+++..+|++|+|+|++++. .+++.+++..+...+. |+|+|+||+|+.+.+. ....+.+.+...
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~- 167 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE- 167 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT-
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999987 8999999887776665 6999999999975321 111112211100
Q ss_pred hhhcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeec--------CCCcEEEEEEeccEEe
Q 008003 320 LEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDK--------GRGPLTTAIVKAGTLV 391 (581)
Q Consensus 320 ~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~--------~~G~v~~~~V~~GtLk 391 (581)
......++++++||++|.|+++|+++|.... +.+..+.+.|+..+|.+++... .+|.+++++|.+|+|+
T Consensus 168 -~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~--~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~ 244 (410)
T 1kk1_A 168 -GTVAENAPIIPISALHGANIDVLVKAIEDFI--PTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLK 244 (410)
T ss_dssp -TSTTTTCCEEECBTTTTBSHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEE
T ss_pred -hcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC--CCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEe
Confidence 1112356899999999999999999998633 2333445677888999887553 4788999999999999
Q ss_pred eCcEEEEccc--------------cceEEEEEcccCCcccccCCCCcEEEec-cC-----CCCCCCCeEEEeC
Q 008003 392 CGQHVVVGHE--------------WGRIRAIRDMVGKSTDKARPAMPVEIEG-LK-----GLPMAGDDIIVVD 444 (581)
Q Consensus 392 ~gd~i~~g~~--------------~~kVk~i~~~~g~~v~~a~~~~~v~i~g-l~-----~~~~~Gd~~~~v~ 444 (581)
+||.|.+.+. .++|++|.. +++.+++|.||+++.+.. +. +--..|++++...
T Consensus 245 ~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~-~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~ 316 (410)
T 1kk1_A 245 VGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA-GGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPG 316 (410)
T ss_dssp TTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE-TTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTT
T ss_pred eCCEEEECCCCccccccccccccceeEEEEEEE-CCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCC
Confidence 9999998542 578999985 678999999999998842 11 1124688776543
No 23
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.96 E-value=2.3e-28 Score=262.24 Aligned_cols=251 Identities=22% Similarity=0.270 Sum_probs=179.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc---ccccccCceeEeeeeEEEeec--------------C--------CeEEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVGMS--------------T--------GASITFL 242 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~---~~~~~~~g~T~d~~~~~~~~~--------------~--------g~~i~li 242 (581)
..++|+++|++|+|||||+++|.+.. +.....+|+|.+.......+. . ...+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45799999999999999999998643 334445788887654433220 0 1689999
Q ss_pred eCCCcchhhHHHhhccccccEEEEEEeccCCC-ChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCCh-hhHHhhhhhccch
Q 008003 243 DTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEAIAHANAANV-PIVVAINKCDKPAADP-ERVKNQLGAEGLE 319 (581)
Q Consensus 243 DTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~~-~~~~~~l~~~~~~ 319 (581)
|||||++|...+.+++..+|++|+|+|++++. .+++.+++..+...+. |+++|+||+|+.+.+. ....+.+.+...
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~- 165 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK- 165 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHT-
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHh-
Confidence 99999999999999999999999999999987 8999999887776665 7999999999975432 111122211100
Q ss_pred hhhcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecC--------CCcEEEEEEeccEEe
Q 008003 320 LEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKG--------RGPLTTAIVKAGTLV 391 (581)
Q Consensus 320 ~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~--------~G~v~~~~V~~GtLk 391 (581)
......++++++||++|+|+++|+++|.... ..+..+.+.|+..+|.+++...+ +|.+++|+|.+|+|+
T Consensus 166 -~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i--~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~ 242 (408)
T 1s0u_A 166 -GTIAENAPIIPISAHHEANIDVLLKAIQDFI--PTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFK 242 (408)
T ss_dssp -TSTTTTCCEEEC------CHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEE
T ss_pred -hcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC--CCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEe
Confidence 0112356899999999999999999998643 33344567788899999886543 788999999999999
Q ss_pred eCcEEEEccc--------------cceEEEEEcccCCcccccCCCCcEEEecc-C-CC----CCCCCeEEEe
Q 008003 392 CGQHVVVGHE--------------WGRIRAIRDMVGKSTDKARPAMPVEIEGL-K-GL----PMAGDDIIVV 443 (581)
Q Consensus 392 ~gd~i~~g~~--------------~~kVk~i~~~~g~~v~~a~~~~~v~i~gl-~-~~----~~~Gd~~~~v 443 (581)
+||.|.+.+. ..+|++|.. +++.+++|.||+++.+..- . ++ -..|+.++..
T Consensus 243 ~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~ 313 (408)
T 1s0u_A 243 VGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA-GNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLP 313 (408)
T ss_dssp TTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE-TTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEEST
T ss_pred cCCEEEEcCCcccccccccccccceeEEEEEEE-CCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECC
Confidence 9999998542 468899986 6788999999999988421 1 11 1467877643
No 24
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.96 E-value=3e-27 Score=269.30 Aligned_cols=311 Identities=25% Similarity=0.273 Sum_probs=235.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc--c----------c------cccCceeEeeeeEEEeecCC-------eEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL--V----------A------KEAGGITQHMGAFVVGMSTG-------ASITF 241 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~--~----------~------~~~~g~T~d~~~~~~~~~~g-------~~i~l 241 (581)
.+.++|+|+||+|+|||||+++|+.... . . ....|+|.......+.+ ++ +.++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence 4568999999999999999999964210 0 0 01357777777666766 44 89999
Q ss_pred EeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cch-
Q 008003 242 LDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GLE- 319 (581)
Q Consensus 242 iDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~~- 319 (581)
||||||.+|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..+....+... +..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~~ 166 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANP 166 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999888889999999999999876544443332211 000
Q ss_pred --------------------------h-----------------------------------------hh----------
Q 008003 320 --------------------------L-----------------------------------------ED---------- 322 (581)
Q Consensus 320 --------------------------~-----------------------------------------~~---------- 322 (581)
+ +.
T Consensus 167 ~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~ 246 (704)
T 2rdo_7 167 VPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEA 246 (704)
T ss_pred eeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHH
Confidence 0 00
Q ss_pred -----------cCCcceEEEEeccCCCChhhHHHHHHHHHHHhhc------------------ccccCCCcceEEEEEEe
Q 008003 323 -----------WGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL------------------KARVDGPAQAYVVEARL 373 (581)
Q Consensus 323 -----------~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~------------------~~~~~~~~~~~V~e~~~ 373 (581)
.+..+|+++.||++|.|++.|++.|......+.. ..+++.|+.++|+++..
T Consensus 247 ~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~ 326 (704)
T 2rdo_7 247 EIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIAT 326 (704)
T ss_pred HHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEE
Confidence 0112589999999999999999999876432211 11356788999999999
Q ss_pred ecCCCcEEEEEEeccEEeeCcEEEEccc-----cceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHH
Q 008003 374 DKGRGPLTTAIVKAGTLVCGQHVVVGHE-----WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEER 448 (581)
Q Consensus 374 ~~~~G~v~~~~V~~GtLk~gd~i~~g~~-----~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~ 448 (581)
+++.|.+++++|.+|+|+.|+.|+..+. .+++..+.+.....++++.+|+.+.|.|+.++ ..||+++...+..
T Consensus 327 d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~-~~GdTl~~~~~~~- 404 (704)
T 2rdo_7 327 DPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV-TTGDTLCDPDAPI- 404 (704)
T ss_pred cCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccC-ccCCEEeCCCccc-
Confidence 9999999999999999999999998643 23445556667788999999999999999987 7899998432210
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeE---------
Q 008003 449 ARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV--------- 519 (581)
Q Consensus 449 a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i--------- 519 (581)
.++ .+....+.+.+-|.+...+..+.|.+.|.++..+...+.+
T Consensus 405 --------------------------~l~--~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~ 456 (704)
T 2rdo_7 405 --------------------------ILE--RMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQT 456 (704)
T ss_pred --------------------------ccC--CCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcE
Confidence 000 0111246778889999999999999999999877544443
Q ss_pred EEeccCccc
Q 008003 520 VHVGVGSVT 528 (581)
Q Consensus 520 ~~~~vG~it 528 (581)
+-.|.|.+.
T Consensus 457 il~g~Gelh 465 (704)
T 2rdo_7 457 IIAGMGELH 465 (704)
T ss_pred EEEeCCHHH
Confidence 345666654
No 25
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.96 E-value=5.9e-28 Score=267.61 Aligned_cols=295 Identities=18% Similarity=0.189 Sum_probs=216.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc----------------------ccccccCceeEeeeeEEEeecCCeEEEEEeCC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS----------------------LVAKEAGGITQHMGAFVVGMSTGASITFLDTP 245 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~----------------------~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTp 245 (581)
+.++|+|+||+++|||||..+|+... .......|+|.......+.+ +++.++|+|||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 45799999999999999999995210 11233568898888888988 89999999999
Q ss_pred CcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhcc-ch-----
Q 008003 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEG-LE----- 319 (581)
Q Consensus 246 G~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~-~~----- 319 (581)
||.+|.....+.++.+|.+|+|+|+.+|+..||...|+++...++|+|+++||+|....+..+....+.+.. ..
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~ 188 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMT 188 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeEE
Confidence 999999999999999999999999999999999999999999999999999999999888766555443210 00
Q ss_pred ----------------------h---------------------------------------------------hhcCCc
Q 008003 320 ----------------------L---------------------------------------------------EDWGGK 326 (581)
Q Consensus 320 ----------------------~---------------------------------------------------~~~~~~ 326 (581)
+ -..+.-
T Consensus 189 ~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~ 268 (548)
T 3vqt_A 189 WPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGEL 268 (548)
T ss_dssp EEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSE
T ss_pred eeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCc
Confidence 0 001223
Q ss_pred ceEEEEeccCCCChhhHHHHHHHHHHHhhccc-------ccCCCcceEEEEEEee---cCCCcEEEEEEeccEEeeCcEE
Q 008003 327 VQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-------RVDGPAQAYVVEARLD---KGRGPLTTAIVKAGTLVCGQHV 396 (581)
Q Consensus 327 ~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~-------~~~~~~~~~V~e~~~~---~~~G~v~~~~V~~GtLk~gd~i 396 (581)
+|+++.||+++.|++.|++.|......+.... +.+.|+.++|+.+..+ +..|.++.++|.+|+|+.|+.|
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v 348 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRL 348 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEETTCEE
T ss_pred ceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecCCCEE
Confidence 58899999999999999999987553332211 2356788899888766 6789999999999999999999
Q ss_pred EEcccc-----ceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008003 397 VVGHEW-----GRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEE 471 (581)
Q Consensus 397 ~~g~~~-----~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~ 471 (581)
...... +++..+.+.....++++.+|+.+.|.|+.++ ..||+++...+..
T Consensus 349 ~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GDTl~~~~~~~------------------------ 403 (548)
T 3vqt_A 349 KHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTI-KIGDTFTESKEVL------------------------ 403 (548)
T ss_dssp EETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCC-CTTCEEESSSSCC------------------------
T ss_pred EeeccccccccchhhhhccccccccCEEecCCEEEecCCccC-ccCCEecCCCCcc------------------------
Confidence 985443 2344556666678999999999999999987 7899987432210
Q ss_pred hccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCC
Q 008003 472 RTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSP 513 (581)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~ 513 (581)
.++ .+....+.+.+-|.+...+..+.+...|+++..+
T Consensus 404 ---~~~--~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~ee 440 (548)
T 3vqt_A 404 ---KFV--GIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEE 440 (548)
T ss_dssp ---CBC--CCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHT
T ss_pred ---ccC--CCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhc
Confidence 000 0000123445556777777788888888777543
No 26
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.95 E-value=6e-28 Score=280.21 Aligned_cols=249 Identities=29% Similarity=0.329 Sum_probs=188.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc----------------cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL----------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~----------------~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~ 250 (581)
...++|+++||+|+|||||+++|.+... ......|+|.+.....+.. ++..++|||||||++|
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHHH
Confidence 3457999999999999999999976410 1123568888887777765 7799999999999999
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCCChhh---HHhhhhhccchhhhcC--
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPER---VKNQLGAEGLELEDWG-- 324 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~~~~~---~~~~l~~~~~~~~~~~-- 324 (581)
..++..++..+|++|+|||++++..+|+.+++..+...++| +|+|+||+|+.+. .+. ...++... +...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d-~e~le~i~eEi~el---Lk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD-EELLELVEMEVREL---LSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCC-HHHHHHHHHHHHHH---HHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccc-hhhHHHHHHHHHHH---HHhcccc
Confidence 99999999999999999999999999999999888888999 8999999999752 221 11111111 11111
Q ss_pred -CcceEEEEeccCC--------CChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcE
Q 008003 325 -GKVQVVEVSAVKK--------TGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQH 395 (581)
Q Consensus 325 -~~~~ii~iSAktg--------~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~ 395 (581)
..++++++||++| .|+++|+++|.... +.+..+.+.|+..+|.+++.+++.|++++|+|.+|+|++||.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I--p~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~ 526 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI--PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEE 526 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS--CCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCE
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhc--CCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCE
Confidence 2468999999999 46888888876532 223334567888899999999999999999999999999999
Q ss_pred EEEccc----cceEEEEEcccCCcccccCCCCcEEEe--ccCCC-CCCCCeEEEe
Q 008003 396 VVVGHE----WGRIRAIRDMVGKSTDKARPAMPVEIE--GLKGL-PMAGDDIIVV 443 (581)
Q Consensus 396 i~~g~~----~~kVk~i~~~~g~~v~~a~~~~~v~i~--gl~~~-~~~Gd~~~~v 443 (581)
|.+.+. ..+|++|.. +++.+++|.||+++.+. |++.. -..|++++..
T Consensus 527 V~I~ps~~~~~~kVksI~~-~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~ 580 (1289)
T 3avx_A 527 VEIVGIKETQKSTCTGVEM-FRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 580 (1289)
T ss_dssp EEEESSSSCEEEEEEEEEC-SSCEESEEETTCEEEEEESSCCGGGCCTTCEEEST
T ss_pred EEEecCCCceeEEEEEEee-cCceeeEEecCCcceeEeeecchhcCCcccEEecC
Confidence 988553 468999964 67899999999998764 44311 1578988753
No 27
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.95 E-value=2.8e-27 Score=269.19 Aligned_cols=312 Identities=23% Similarity=0.240 Sum_probs=207.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc------------------ccccCceeEeeeeEEEeecCCeEEEEEeCCCcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV------------------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~------------------~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~ 248 (581)
.+.++|+|+|++|+|||||+++|...... .....++|.......+.+ +++.++|||||||.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 88 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHV 88 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSST
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCcc
Confidence 34579999999999999999999742110 011457787777777777 78999999999999
Q ss_pred hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cc---------
Q 008003 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL--------- 318 (581)
Q Consensus 249 ~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~--------- 318 (581)
+|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+.......+.+. +.
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~Pi 168 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPI 168 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEEE
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceeccc
Confidence 99999999999999999999999999999999999888889999999999999876544443333221 00
Q ss_pred ------------------hhh-h---------------------------------------------------------
Q 008003 319 ------------------ELE-D--------------------------------------------------------- 322 (581)
Q Consensus 319 ------------------~~~-~--------------------------------------------------------- 322 (581)
.+. .
T Consensus 169 ~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~ 248 (691)
T 1dar_A 169 GREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRK 248 (691)
T ss_dssp SCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 000 0
Q ss_pred ---cCCcceEEEEeccCCCChhhHHHHHHHHHHHhhc----------------ccccCCCcceEEEEEEeecCCCcEEEE
Q 008003 323 ---WGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL----------------KARVDGPAQAYVVEARLDKGRGPLTTA 383 (581)
Q Consensus 323 ---~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~----------------~~~~~~~~~~~V~e~~~~~~~G~v~~~ 383 (581)
.+..+|+++.||++|.|++.|++.|......+.. ..+++.|+.++|+++..+++.|.++++
T Consensus 249 ~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~ 328 (691)
T 1dar_A 249 GTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFI 328 (691)
T ss_dssp HHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEE
T ss_pred HHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEE
Confidence 0112689999999999999999999886533221 113577899999999999999999999
Q ss_pred EEeccEEeeCcEEEEccc-----cceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHH
Q 008003 384 IVKAGTLVCGQHVVVGHE-----WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKK 458 (581)
Q Consensus 384 ~V~~GtLk~gd~i~~g~~-----~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~ 458 (581)
+|.+|+|+.||.|..... .+++..+.+.....++++.+|+.+.|.|+.++ ..||+++...+..
T Consensus 329 RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdtl~~~~~~~----------- 396 (691)
T 1dar_A 329 RVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKET-ITGDTLVGEDAPR----------- 396 (691)
T ss_dssp EEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSC-CTTCEEEETTCCC-----------
T ss_pred EEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccC-ccCCEEecCCCcc-----------
Confidence 999999999999998543 34556666677788999999999999999988 5799998533210
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCceEe---------eEEEeccCccc
Q 008003 459 KFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFV---------NVVHVGVGSVT 528 (581)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~---------~i~~~~vG~it 528 (581)
..++ .+....+.+.+-|.+...+..+.|.+.|.++..+...+ ..+-.|.|.+.
T Consensus 397 ---------------~~l~--~~~~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelh 458 (691)
T 1dar_A 397 ---------------VILE--SIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELH 458 (691)
T ss_dssp ---------------CBCC----------------------------------CCCCSCEEEC-----CEEEEESCCC-
T ss_pred ---------------cccC--CCCCCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHH
Confidence 0000 00012356777788888888999999998888764222 34557777765
No 28
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.95 E-value=3.2e-27 Score=253.02 Aligned_cols=252 Identities=24% Similarity=0.281 Sum_probs=183.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccc-cccCcee--------------EeeeeEEEee----cCCeEEEEEeCCCc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGIT--------------QHMGAFVVGM----STGASITFLDTPGH 247 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~-~~~~g~T--------------~d~~~~~~~~----~~g~~i~liDTpG~ 247 (581)
...++|+++|++|||||||+|+|.+..... ......+ .+........ .....+.|||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 456899999999999999999998743211 0000111 1100000000 01268999999999
Q ss_pred chhhHHHhhccccccEEEEEEeccCCC-ChhHHHHHHHHhhcCC-CEEEEEeCCCCCCCCh-hhHHhhhhhccchhhh-c
Q 008003 248 AAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEAIAHANAANV-PIVVAINKCDKPAADP-ERVKNQLGAEGLELED-W 323 (581)
Q Consensus 248 ~~~~~~~~~~~~~aDivllVvDa~~g~-~~~~~~~i~~~~~~~~-piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~-~ 323 (581)
++|...+..++..+|++|+|+|++++. .+++.+++..+...+. |+++|+||+|+.+.+. ......+.+ .+.. .
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~---~l~~~~ 162 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQ---FTKGTW 162 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHH---HHTTST
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHH---HHHhhC
Confidence 999999999999999999999999987 8899999888776665 8999999999975321 111112211 1111 1
Q ss_pred CCcceEEEEeccCCCChhhHHHHHHHHHHHhhcccccCCCcceEEEEEEeecC--------CCcEEEEEEeccEEeeCcE
Q 008003 324 GGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKG--------RGPLTTAIVKAGTLVCGQH 395 (581)
Q Consensus 324 ~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~~~~~~~~~V~e~~~~~~--------~G~v~~~~V~~GtLk~gd~ 395 (581)
...++++++||++|.|+++|+++|.... ..+..+.+.|+..+|.+++...+ +|.+++|+|.+|++++||.
T Consensus 163 ~~~~~ii~vSA~~g~gi~~L~~~l~~~l--~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~ 240 (403)
T 3sjy_A 163 AENVPIIPVSALHKINIDSLIEGIEEYI--KTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQE 240 (403)
T ss_dssp TTTCCEEECBTTTTBSHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCE
T ss_pred CCCCEEEEEECCCCcChHHHHHHHHHhC--CCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCE
Confidence 2356899999999999999999998643 34445567788899999886554 7999999999999999999
Q ss_pred EEEccc--------------cceEEEEEcccCCcccccCCCCcEEEeccC---C----CCCCCCeEEEeCC
Q 008003 396 VVVGHE--------------WGRIRAIRDMVGKSTDKARPAMPVEIEGLK---G----LPMAGDDIIVVDS 445 (581)
Q Consensus 396 i~~g~~--------------~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~---~----~~~~Gd~~~~v~~ 445 (581)
|.+++. ..+|++|.. +++.+++|.||+++.+. +. + --..|++++...+
T Consensus 241 v~~~p~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~~a~~G~~v~~~-l~~~~~~~~~d~~~G~vl~~~~~ 309 (403)
T 3sjy_A 241 IKVLPGLRVEKQGKVSYEPIFTKISSIRF-GDEEFKEAKPGGLVAIG-TYLDPSLTKADNLLGSIITLADA 309 (403)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEE-TTEEESEECSSSCEEEE-ESSCHHHHGGGTTTTCEEEETTC
T ss_pred EEEeCCcccccccccccccccEEEEEEEE-CCEEcCEEeCCCEEEEE-eccccccchhhhccccEEeCCCC
Confidence 998543 358999985 68899999999999883 22 1 1146888876544
No 29
>1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus}
Probab=99.95 E-value=1.6e-29 Score=225.65 Aligned_cols=123 Identities=29% Similarity=0.445 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC--CCCC-CCCcccCEEEEecCcccHHHHHHHHHhcCCCceEeeEEE
Q 008003 445 SEERARMLSSGRKKKFEKDRVRKINEERTENLEP--SEDV-PKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVH 521 (581)
Q Consensus 445 ~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~~~~~i~~ 521 (581)
|+|+|++++++|++ ++. ++......++++ +.++ ++.+.+|+|||||++||+|||.++|.++++++|+++|++
T Consensus 1 ~~~ea~~ia~~R~~--r~~---~~~~~~~~~Le~l~~~i~~~~~k~l~vIiKaDv~GSlEAl~~~L~~l~~~ev~i~Ii~ 75 (135)
T 1z9b_A 1 NEFELGTRGSSRVD--LQE---QRSVKTRVSLDDLFEQIKQGEMKELNLIVKADVQGSVEALVAALQKIDVEGVRVKIIH 75 (135)
T ss_dssp CCSCCCCCTTTTSC--CCS---CSSCSSCCSCCCCCCCCCCCSSCEEEEEEEESSHHHHHHHHHHHTTCCCSSCEEEEEE
T ss_pred CchhHHHHHHHHHH--HHH---HHHhhccCCHHHHHHHHhccCcccCCEEEEeCCcchHHHHHHHHHhcCCCceEEEEEe
Confidence 57899999998876 221 112222334444 2222 456899999999999999999999999999999999999
Q ss_pred eccCccchhhhhhhhccCCEEEEecCCCChhHHHHHHHHcCceEEEeeeecc
Q 008003 522 VGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGIKTRLLGLLRP 573 (581)
Q Consensus 522 ~~vG~it~~Dv~~A~~~~~~I~~Fnv~~~~~~~~~~a~~~~v~i~~~~ii~~ 573 (581)
+|||+||++||.+|++++|+|+||||++++++ +++|++.||+|++|+|||-
T Consensus 76 ~gVG~ItesDV~lA~as~aiIigFNV~~~~~a-~~~A~~~gV~I~~~~IIY~ 126 (135)
T 1z9b_A 76 AAVGAITESDISLATASNAIVIGFNVRPDANA-KRAAESEKVDIRLHRIIYN 126 (135)
T ss_dssp EEESCBCHHHHHHHHHHTCEEEESSCCBCTTH-HHHHHTTTCCCEECTTCCC
T ss_pred ecCCCCCHHHHHHHHHcCCEEEEeeCCCCHHH-HHHHHHcCCeEEEeChHHH
Confidence 99999999999999999999999999999999 9999999999999999995
No 30
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.95 E-value=9.2e-27 Score=257.01 Aligned_cols=295 Identities=18% Similarity=0.200 Sum_probs=205.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccccc----------------------ccccCceeEeeeeEEEeecCCeEEEEEeCC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV----------------------AKEAGGITQHMGAFVVGMSTGASITFLDTP 245 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~----------------------~~~~~g~T~d~~~~~~~~~~g~~i~liDTp 245 (581)
+.++|+|+||+|+|||||+++|+..... .....|+|.+.....+.+ +++.++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence 4579999999999999999999853110 012456676666677777 78999999999
Q ss_pred CcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc---------
Q 008003 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE--------- 316 (581)
Q Consensus 246 G~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~--------- 316 (581)
||++|...+.+++..+|++|+|+|++++...++.+++..+...++|+++++||+|+...+..+....+.+.
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~ 170 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPIT 170 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999999888889999999999999866543322222110
Q ss_pred ---------------------------cc------h--------hh------------------------------hcCC
Q 008003 317 ---------------------------GL------E--------LE------------------------------DWGG 325 (581)
Q Consensus 317 ---------------------------~~------~--------~~------------------------------~~~~ 325 (581)
+. . +. ..+.
T Consensus 171 ~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 250 (529)
T 2h5e_A 171 WPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGE 250 (529)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTTS
T ss_pred cceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhCc
Confidence 00 0 00 0012
Q ss_pred cceEEEEeccCCCChhhHHHHHHHHHHHhhccc-------ccCCCcceEEEEEEe---ecCCCcEEEEEEeccEEeeCcE
Q 008003 326 KVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-------RVDGPAQAYVVEARL---DKGRGPLTTAIVKAGTLVCGQH 395 (581)
Q Consensus 326 ~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~-------~~~~~~~~~V~e~~~---~~~~G~v~~~~V~~GtLk~gd~ 395 (581)
.+|+++.||++|.||+.|++.|......+.... +.+.|+.++|+.+.. .+++|.+++++|.+|+|+.|+.
T Consensus 251 ~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~ 330 (529)
T 2h5e_A 251 ITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMK 330 (529)
T ss_dssp EEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCE
T ss_pred eeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCE
Confidence 358999999999999999999987653332111 114678888988754 3568999999999999999999
Q ss_pred EEEccc--cceEEEEE---cccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008003 396 VVVGHE--WGRIRAIR---DMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINE 470 (581)
Q Consensus 396 i~~g~~--~~kVk~i~---~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~ 470 (581)
|...+. ..+|..+. +.+.+.+++|.||+.+.+.|+..+ ..||+++.-++ +
T Consensus 331 v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~-~~Gdtl~~~~~------~------------------ 385 (529)
T 2h5e_A 331 LRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTI-QIGDTFTQGEM------M------------------ 385 (529)
T ss_dssp EEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCC-CTTCEEESSCC------C------------------
T ss_pred EEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCC-ccCCEeecCCc------c------------------
Confidence 998653 33555554 445678999999999999999887 57999984221 0
Q ss_pred hhccCCCCCCCCCCCcccCEEEEecCcccHHHHHHHHHhcCCCc
Q 008003 471 ERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQ 514 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~~ 514 (581)
.++ .+....+.+.+-|.+...+..+.+.+.|.++..+.
T Consensus 386 ----~~~--~~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed 423 (529)
T 2h5e_A 386 ----KFT--GIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEG 423 (529)
T ss_dssp ----CBC--CCEEECCSEEEEEEESCC---CTHHHHHHHHHHTT
T ss_pred ----ccC--CCCCCCccEEEEEEECChHHHHHHHHHHHHHHhhC
Confidence 000 00012345556666777777777777777666443
No 31
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.94 E-value=4e-26 Score=258.78 Aligned_cols=295 Identities=22% Similarity=0.237 Sum_probs=224.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccccc------------------ccCceeEeeeeEEEeecCCeEEEEEeCCCcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAK------------------EAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~------------------~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~ 248 (581)
.++.+|+|+|++|+|||||+++|.+...... ...++|.......+.+ .+..++|||||||.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCcc
Confidence 4678999999999999999999984321100 0235666665666666 78999999999999
Q ss_pred hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-c-c--------
Q 008003 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-G-L-------- 318 (581)
Q Consensus 249 ~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~-~-------- 318 (581)
+|...+.++++.+|++++|+|++++...++.+.+..+...++|+++|+||+|+. ....+....+... + .
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~~~~Pi~ 164 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPILPIDLPLY 164 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSEEECEEEEE
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCcceEEeeec
Confidence 999999999999999999999999999999999999888899999999999997 5544443333221 1 0
Q ss_pred -----------------h-------------------------------------hhh---------------------c
Q 008003 319 -----------------E-------------------------------------LED---------------------W 323 (581)
Q Consensus 319 -----------------~-------------------------------------~~~---------------------~ 323 (581)
. ++. .
T Consensus 165 ~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~ 244 (665)
T 2dy1_A 165 EGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRR 244 (665)
T ss_dssp ETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred CCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence 0 000 0
Q ss_pred CCcceEEEEeccCCCChhhHHHHHHHHHHHhhcccc-cCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcccc
Q 008003 324 GGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKAR-VDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW 402 (581)
Q Consensus 324 ~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~~~-~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~~~ 402 (581)
+..+|++++||++|.|+++|+++|..... .+... ++.|+.++|+++..+++.|.++.++|.+|+|+.||.|...+..
T Consensus 245 ~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp--~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~~~ 322 (665)
T 2dy1_A 245 GLLYPVALASGEREIGVLPLLELILEALP--SPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQ 322 (665)
T ss_dssp TSCEEEEECBTTTTBSHHHHHHHHHHHSC--CHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTTSC
T ss_pred CCeeEEEEeecccCcCHHHHHHHHHHhCC--CccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCCCe
Confidence 11268999999999999999999987432 22211 6788999999999999999999999999999999999987644
Q ss_pred ceEEE---EEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCC
Q 008003 403 GRIRA---IRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPS 479 (581)
Q Consensus 403 ~kVk~---i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 479 (581)
.+|.. +.+.+...++++.+|+.+.|.|+.++ ..||+++...+.. ...+.
T Consensus 323 ~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~-~~Gdtl~~~~~~~-------------------------~~~l~-- 374 (665)
T 2dy1_A 323 VRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGL-HRGMVLWQGEKPE-------------------------SEEVP-- 374 (665)
T ss_dssp EEESSEEEEETTEEEEESCEETTCEEEESSCTTC-CTTCEEESSSCCC-------------------------GGGSC--
T ss_pred EEEeEEEEEeCCCeeECCEECCCCEEEEeCCccC-ccCCEEecCCCcc-------------------------ccccC--
Confidence 45544 44556678999999999999999987 5999998543310 00011
Q ss_pred CCCCCCcccCEEEEecCcccHHHHHHHHHhcCCC
Q 008003 480 EDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSP 513 (581)
Q Consensus 480 ~~~~~~~~~~iiikad~~Gs~eAi~~~l~~~~~~ 513 (581)
.+....+.+.+-|.+...+..+.+.+.|.++..+
T Consensus 375 ~~~~~~P~~~~~i~p~~~~d~~kl~~~L~~l~~e 408 (665)
T 2dy1_A 375 FARLPDPNVPVALHPKGRTDEARLGEALRKLLEE 408 (665)
T ss_dssp CCCCCCCCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEEECChhhHHHHHHHHHHHHHh
Confidence 0111246777889999999999999999987643
No 32
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=1.8e-25 Score=254.40 Aligned_cols=254 Identities=25% Similarity=0.242 Sum_probs=194.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc--cc----------c------cccCceeEeeeeEEEeecCCeEEEEEeCCCcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS--LV----------A------KEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~--~~----------~------~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~ 248 (581)
.+.++|+|+|++|+|||||+|+|+... +. . ...+++|.......+.+ ++..++|||||||.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence 345799999999999999999998421 10 0 01357777777777777 78999999999999
Q ss_pred hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhc-cc---------
Q 008003 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL--------- 318 (581)
Q Consensus 249 ~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~--------- 318 (581)
+|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+.......+... +.
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ipi 166 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPI 166 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEEE
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEeec
Confidence 99999999999999999999999999999999998888889999999999999876544333332211 00
Q ss_pred ------------------hhh-h---------------------------------------------------------
Q 008003 319 ------------------ELE-D--------------------------------------------------------- 322 (581)
Q Consensus 319 ------------------~~~-~--------------------------------------------------------- 322 (581)
.+. .
T Consensus 167 sa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~ 246 (693)
T 2xex_A 167 GAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQ 246 (693)
T ss_dssp CCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred ccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 000 0
Q ss_pred ---cCCcceEEEEeccCCCChhhHHHHHHHHHHHhhcc------------------cccCCCcceEEEEEEeecCCCcEE
Q 008003 323 ---WGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLK------------------ARVDGPAQAYVVEARLDKGRGPLT 381 (581)
Q Consensus 323 ---~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~~------------------~~~~~~~~~~V~e~~~~~~~G~v~ 381 (581)
.+..+|+++.||++|.|++.|++.|......+... .+++.|+.++|+.+..++..|.++
T Consensus 247 ~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~ 326 (693)
T 2xex_A 247 ATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLT 326 (693)
T ss_dssp HHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEE
T ss_pred HHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCCceEE
Confidence 01125899999999999999999998865333211 135678999999999999999999
Q ss_pred EEEEeccEEeeCcEEEEcccc--ceE---EEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEE
Q 008003 382 TAIVKAGTLVCGQHVVVGHEW--GRI---RAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIV 442 (581)
Q Consensus 382 ~~~V~~GtLk~gd~i~~g~~~--~kV---k~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~ 442 (581)
.++|.+|+|+.|+.|...... .+| ..+.+.....++++.+|+.+.|.|+.++ ..||+++.
T Consensus 327 ~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~GdTl~~ 391 (693)
T 2xex_A 327 FFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDT-GTGDTLCG 391 (693)
T ss_dssp EEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSC-CTTCEEEE
T ss_pred EEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccC-ccCCEEec
Confidence 999999999999999986432 234 4445555678999999999999999887 57998875
No 33
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.93 E-value=5.4e-27 Score=241.65 Aligned_cols=247 Identities=14% Similarity=0.164 Sum_probs=179.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeecCCeEEEEEeCCCcc-h--------hhHHHhh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHA-A--------FSAMRKR 256 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~-~--------~~~~~~~ 256 (581)
.++.+|+|+|+||||||||+|+|++..+. .+..+++|++.....+.. ++..++||||||+. . +......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-CCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 34568999999999999999999998764 456677887766555655 78899999999987 2 2223346
Q ss_pred ccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 257 GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
++..+|++++|+|+++ ....+...+..+...+.|+++++||+|+.. +.......+.... ..+ +..+++++||++
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~---~~~-~~~~~i~iSA~~ 158 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ-EKADLLPHLQFLA---SQM-NFLDIVPISAET 158 (301)
T ss_dssp CCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC-CHHHHHHHHHHHH---TTS-CCSEEEECCTTT
T ss_pred HHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc-cHHHHHHHHHHHH---Hhc-CcCceEEEECCC
Confidence 7889999999999988 777777777777777899999999999974 1222323222211 111 123689999999
Q ss_pred CCChhhHHHHHHHHHHHh---------------------------hcccccCCCcceEEEEEEeecCCCcEEEEEEeccE
Q 008003 337 KTGLDDLEVALLLQAEMM---------------------------NLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGT 389 (581)
Q Consensus 337 g~gI~eLl~~L~~~~~~~---------------------------~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~Gt 389 (581)
|.|+++|++.|....... +...+..+...+++++.+.++. .|+
T Consensus 159 g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~----------~~~ 228 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNE----------RGG 228 (301)
T ss_dssp TTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCS----------SCS
T ss_pred CCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecC----------CCe
Confidence 999999999987532100 0001122233345555554433 356
Q ss_pred EeeCcEEEEccccceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHH
Q 008003 390 LVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARM 451 (581)
Q Consensus 390 Lk~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~~ 451 (581)
++....|++.....| ..+++..|..++++++.++.+|.++.+.|+++++|++|.+.|+.+.
T Consensus 229 ~~i~~~i~v~~~~~k-~i~ig~~G~~~k~ig~~ar~~i~~~~~~~v~l~l~vkv~~~w~~~~ 289 (301)
T 1ega_A 229 YDINGLILVEREGQK-KMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDE 289 (301)
T ss_dssp EEEEEEEEESSHHHH-HHHHCGGGHHHHHHHHHHHHHHHHHTTSCEEEEEEEEETTCCCHHH
T ss_pred EEEEEEEEEEECCce-EEEECCCcHHHHHHHHHHHHHHHHHHCCCeEEEEEEEECCCcccCH
Confidence 666666666444333 4678899999999999999999999999999999999999997654
No 34
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.93 E-value=7.4e-26 Score=212.22 Aligned_cols=171 Identities=62% Similarity=0.960 Sum_probs=142.4
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
...+.++|+++|++|+|||||+++|.+..+.....+++|.++....+.+ ++..+.+|||||++.|..++..++..+|++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 4567899999999999999999999998888777788888887777777 788999999999999999888999999999
Q ss_pred EEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 265 VLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 265 llVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
++|+|++++...++.+.+..+...++|+++|+||+|+...+.+.....+.........++...+++++||++|.|+++|+
T Consensus 83 i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 162 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLL 162 (178)
T ss_dssp EEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHH
Confidence 99999999888888888888877899999999999997655444444444333333334445689999999999999999
Q ss_pred HHHHHHHHHhhc
Q 008003 345 VALLLQAEMMNL 356 (581)
Q Consensus 345 ~~L~~~~~~~~~ 356 (581)
++|.........
T Consensus 163 ~~l~~~~~~~~~ 174 (178)
T 2lkc_A 163 EMILLVSEMEEL 174 (178)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHhhhhhcc
Confidence 999887665443
No 35
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.93 E-value=4.8e-25 Score=251.85 Aligned_cols=254 Identities=26% Similarity=0.279 Sum_probs=194.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc--------c----------cccccCceeEeeeeEEEeec------CCeEEEEEe
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS--------L----------VAKEAGGITQHMGAFVVGMS------TGASITFLD 243 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~--------~----------~~~~~~g~T~d~~~~~~~~~------~g~~i~liD 243 (581)
+-++|+|+||.+||||||.++|+... . .....+|+|.......+.+. +++.++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 45789999999999999999995321 0 11235688888877777763 258999999
Q ss_pred CCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhcc-c----
Q 008003 244 TPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEG-L---- 318 (581)
Q Consensus 244 TpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~-~---- 318 (581)
||||.+|.....++++.+|++|+|+|+.+|+..||...|+++...++|.|+++||+|....+......++...- .
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~~~~ 171 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVP 171 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSCEEE
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999998776554444332100 0
Q ss_pred --------------------------------h-----------------------------------------------
Q 008003 319 --------------------------------E----------------------------------------------- 319 (581)
Q Consensus 319 --------------------------------~----------------------------------------------- 319 (581)
.
T Consensus 172 ~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~ 251 (709)
T 4fn5_A 172 VQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEI 251 (709)
T ss_dssp SEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHHH
T ss_pred eecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHHH
Confidence 0
Q ss_pred -----h-hhcCCcceEEEEeccCCCChhhHHHHHHHHHHHhhc------------------ccccCCCcceEEEEEEeec
Q 008003 320 -----L-EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL------------------KARVDGPAQAYVVEARLDK 375 (581)
Q Consensus 320 -----~-~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~~~------------------~~~~~~~~~~~V~e~~~~~ 375 (581)
. ...+.-.|++..||.++.|+..|++.|......+.. ..+++.|+.+.|+....++
T Consensus 252 ~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~ 331 (709)
T 4fn5_A 252 KEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDP 331 (709)
T ss_dssp HHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBT
T ss_pred HHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEeeccc
Confidence 0 001123578899999999999999999875432211 2356788999999999999
Q ss_pred CCCcEEEEEEeccEEeeCcEEEEccc-----cceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEE
Q 008003 376 GRGPLTTAIVKAGTLVCGQHVVVGHE-----WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIV 442 (581)
Q Consensus 376 ~~G~v~~~~V~~GtLk~gd~i~~g~~-----~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~ 442 (581)
..|.++.++|.+|+|+.|+.|+.... .+++..+.+.....++++.+|+.+.|.|+.++ ..||+++.
T Consensus 332 ~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~-~~gdTl~~ 402 (709)
T 4fn5_A 332 FVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDV-TTGDTLCS 402 (709)
T ss_dssp TTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSC-CTTCEEEC
T ss_pred CCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcC-ccCCEecC
Confidence 99999999999999999999986432 23444556666778999999999999999876 67888874
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.92 E-value=3.5e-26 Score=236.30 Aligned_cols=249 Identities=22% Similarity=0.237 Sum_probs=183.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchh----------hHHH
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAF----------SAMR 254 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~----------~~~~ 254 (581)
+....|+|+|+||||||||+|+|.+..+. .+..+++|++.....+.. + +..+.||||||+.++ ....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 34568999999999999999999998765 567788998887777776 5 899999999998543 3556
Q ss_pred hhccccccEEEEEEeccCCCChhHHHH-HHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEe
Q 008003 255 KRGAAVTDIVVLVVAADDGVMPQTLEA-IAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 255 ~~~~~~aDivllVvDa~~g~~~~~~~~-i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iS 333 (581)
..++..+|++++|+|++++...++... +..+...++|+++|+||+|+... .......+.... ..++...+++++|
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~-~~~~~~~~~~l~---~~~~~~~~i~~vS 162 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGP-AKNVLPLIDEIH---KKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSS-GGGGHHHHHHHH---HHCTTCCCEEECB
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCC-HHHHHHHHHHHH---HhccCCCeEEEEe
Confidence 678899999999999999888888877 67777788999999999999621 111111111111 1122345899999
Q ss_pred ccCCCChhhHHHHHHHHHHHhhccc---------------------------ccCCCcceEEEEEEeecCCCcEEEEEEe
Q 008003 334 AVKKTGLDDLEVALLLQAEMMNLKA---------------------------RVDGPAQAYVVEARLDKGRGPLTTAIVK 386 (581)
Q Consensus 334 Aktg~gI~eLl~~L~~~~~~~~~~~---------------------------~~~~~~~~~V~e~~~~~~~G~v~~~~V~ 386 (581)
|++|.|+++|+++|........... +.-+...++.++.+..... .
T Consensus 163 A~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~--------~ 234 (308)
T 3iev_A 163 ALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDA--------N 234 (308)
T ss_dssp TTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSS--------C
T ss_pred CCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccC--------C
Confidence 9999999999999986542111111 0111223334444333210 1
Q ss_pred ccEEeeCcEEEEccccceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHH
Q 008003 387 AGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERA 449 (581)
Q Consensus 387 ~GtLk~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a 449 (581)
.|.+++...|++.....| .++++++|..+++++..++.+|..+.+.+++.+++++|...|+-
T Consensus 235 ~~~~~i~a~i~ve~~~~k-~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~l~vkv~~~w~~ 296 (308)
T 3iev_A 235 PNMLVIKGEIIVDRENLK-PIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRR 296 (308)
T ss_dssp TTSEEEEEEEEESSGGGH-HHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEEEEEEECTTGGG
T ss_pred CCeEEEEEEEEEccCCcc-eEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEECCCccc
Confidence 256667677777655554 56789999999999999999999999999999999999999974
No 37
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.92 E-value=2e-26 Score=260.02 Aligned_cols=238 Identities=24% Similarity=0.238 Sum_probs=187.9
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccc------------------cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSL------------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~------------------~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~ 250 (581)
-++|+|+||++||||||.++|+...- ......|+|.......+.+ +++.++|+|||||.+|
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence 46899999999999999999953210 0112358888888888888 8899999999999999
Q ss_pred hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccch-----------
Q 008003 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLE----------- 319 (581)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~----------- 319 (581)
.....++++.+|++|+|+|+.+|+..||...|+++...++|.|+++||+|....+.......+.+..-.
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~ 160 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELY 160 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEee
Confidence 999999999999999999999999999999999999999999999999999877765544433221000
Q ss_pred ------------------------h---------------------hhcCCcceEEEEeccCCCChhhHHHHHHHHHHHh
Q 008003 320 ------------------------L---------------------EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMM 354 (581)
Q Consensus 320 ------------------------~---------------------~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~~~ 354 (581)
+ ...+.-.|+++.||+++.|++.|++.|... .+
T Consensus 161 ~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~--~p 238 (638)
T 3j25_A 161 PNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK--FY 238 (638)
T ss_dssp GGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS--CC
T ss_pred ccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc--cc
Confidence 0 001123578899999999999999999763 33
Q ss_pred hcccccCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc-ccceEEE---EEcccCCcccccCCCCcEEEec
Q 008003 355 NLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH-EWGRIRA---IRDMVGKSTDKARPAMPVEIEG 429 (581)
Q Consensus 355 ~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~-~~~kVk~---i~~~~g~~v~~a~~~~~v~i~g 429 (581)
.+....+.++.+.|+.+..++..|.+++++|.+|+|+.||.|.+.. ...+|.. +.+.....++++.+|+.+.+.|
T Consensus 239 ~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g 317 (638)
T 3j25_A 239 SSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSINGELCKIDRAYSGEIVILQN 317 (638)
T ss_dssp CSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCCSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS
T ss_pred CcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCcceeEEeeecccccccccccccccceEEEEec
Confidence 4444566788999999999999999999999999999999987643 2233333 3444556788999999887765
No 38
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=1e-25 Score=231.98 Aligned_cols=243 Identities=19% Similarity=0.153 Sum_probs=177.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeecCCeEEEEEeCCCcch--------hhHHHhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA--------FSAMRKRGA 258 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~--------~~~~~~~~~ 258 (581)
+..+|+|+|+||+|||||+|+|++..+. .+..+++|++.....+.. ++..+.||||||+.+ |......++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-CCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 4568999999999999999999998764 566778888876665555 789999999999765 556667789
Q ss_pred ccccEEEEEEeccCCCChhHHHHHHHHhhc--CCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAA--NVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 259 ~~aDivllVvDa~~g~~~~~~~~i~~~~~~--~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
+.+|++++|+|++++....+...+..+... ++|+++|+||+|+...... ....+... ....+++++||++
T Consensus 85 ~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~-------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYHEL-------LPEAEPRMLSALD 156 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHHHT-------STTSEEEECCTTC
T ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-HHHHHHHh-------cCcCcEEEEeCCC
Confidence 999999999999988777776666677666 8999999999999643221 22222222 1234799999999
Q ss_pred CCChhhHHHHHHHHHHHhhcccc-----cCCCc-----------------------ceEEEEEEeecCCCcEEEEEEecc
Q 008003 337 KTGLDDLEVALLLQAEMMNLKAR-----VDGPA-----------------------QAYVVEARLDKGRGPLTTAIVKAG 388 (581)
Q Consensus 337 g~gI~eLl~~L~~~~~~~~~~~~-----~~~~~-----------------------~~~V~e~~~~~~~G~v~~~~V~~G 388 (581)
|.|+++|++.|...........+ .+.|. ....++.+... ..|
T Consensus 157 g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~----------~~~ 226 (301)
T 1wf3_A 157 ERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAER----------ENG 226 (301)
T ss_dssp HHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEE----------TTT
T ss_pred CCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEec----------CCC
Confidence 99999999999763211010000 01110 11122222211 136
Q ss_pred EEeeCcEEEEccccceEEEEEcccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHH
Q 008003 389 TLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERAR 450 (581)
Q Consensus 389 tLk~gd~i~~g~~~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~~~~Gd~~~~v~~~~~a~ 450 (581)
.+.+...|++-....| ..+++++|..++.++..++.+|..+.+.+++.+++++|...|+-+
T Consensus 227 ~~~i~~~i~ve~~~~k-~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~l~vkv~~~w~~~ 287 (301)
T 1wf3_A 227 VLYIKAILYVERPSQK-AIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYPDWRKD 287 (301)
T ss_dssp EEEEEEEEEESSHHHH-HHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEEEEEEECTTGGGC
T ss_pred eEEEEEEEEEeeCCce-EEEEeCCchHHHHHHHHHHHHHHHHHCCceEEEEEEEECCCcccC
Confidence 6777667777554443 567899999999999999999999999999999999999999643
No 39
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.87 E-value=5e-22 Score=194.81 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=111.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+..+|+|+|.+|||||||+++|....+...+.+++..++....+... ..+.+.||||||++.|..++..+++.+|+++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 345799999999999999999999999888778878778777666653 2367889999999999999999999999999
Q ss_pred EEEeccCCCC----hhHHHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 266 LVVAADDGVM----PQTLEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 266 lVvDa~~g~~----~~~~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
+|+|.++... ..|+..+......++|+++|+||+|+.... .++...... .+ .++++++||++|.
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~-------~~--~~~~~e~SAktg~ 161 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK-------EL--NVMFIETSAKAGY 161 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHH-------HH--TCEEEEEBTTTTB
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHH-------Hh--CCeeEEEeCCCCc
Confidence 9999998332 233333444445678999999999995321 111111111 11 2579999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
||+++|+.|.+..
T Consensus 162 nV~e~F~~i~~~i 174 (216)
T 4dkx_A 162 NVKQLFRRVAAAL 174 (216)
T ss_dssp SHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997643
No 40
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.87 E-value=1.1e-21 Score=180.31 Aligned_cols=150 Identities=21% Similarity=0.303 Sum_probs=110.4
Q ss_pred CEEEEEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeecCCeEEEEEeCCCcch-------hhHHHhhccccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAAVT 261 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~-------~~~~~~~~~~~a 261 (581)
++|+++|++|+|||||+++|.+.... ....+++|.+.....+.. ++..+.+|||||+.. +...+..++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-TTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-CCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 58999999999999999999987653 456678888888877777 778999999999876 445566788999
Q ss_pred cEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 262 DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 262 DivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
|++++|+|++++...........+...+.|+++|+||+|+.... ....+ +..++ ..+++++||++|.|++
T Consensus 81 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~----~~~~~-~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE-----LYLGP----LYGLG-FGDPIPTSSEHARGLE 150 (161)
T ss_dssp SEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG-----GGCGG----GGGGS-SCSCEECBTTTTBSHH
T ss_pred CEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch-----HhHHH----HHhCC-CCCeEEEecccCCChH
Confidence 99999999998776665555566666789999999999996431 11111 11121 2268999999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
+++++|...
T Consensus 151 ~l~~~l~~~ 159 (161)
T 2dyk_A 151 ELLEAIWER 159 (161)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998763
No 41
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.86 E-value=8.4e-22 Score=192.12 Aligned_cols=163 Identities=25% Similarity=0.341 Sum_probs=122.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc--ccccccCceeEeeeeEEEeecCCeEEEEEeCCCc----------chhhHHH
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS--LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH----------AAFSAMR 254 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~--~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~----------~~~~~~~ 254 (581)
...++|+++|++|+|||||+|+|.+.. ...+..+++|.+.....+...++..+.||||||+ +.+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 356899999999999999999999886 2556778888887777766336789999999995 3344444
Q ss_pred hhccc---cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhc-----CCc
Q 008003 255 KRGAA---VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDW-----GGK 326 (581)
Q Consensus 255 ~~~~~---~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~-----~~~ 326 (581)
..++. .+|++++|+|++++........+..+...++|+++|+||+|+... .............+..+ ...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTR--QESINALRATQKSLDAYRDAGYAGK 184 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCH--HHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCCh--hhHHHHHHHHHHHHHhhhhcccCCC
Confidence 44444 489999999999988877778888888889999999999999642 22111111111111111 245
Q ss_pred ceEEEEeccCCCChhhHHHHHHHHH
Q 008003 327 VQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 327 ~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
.+++++||++|.|+++|+++|....
T Consensus 185 ~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 185 LTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp EEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEeecCCCcCHHHHHHHHHHhc
Confidence 6899999999999999999998754
No 42
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.86 E-value=2.7e-21 Score=179.64 Aligned_cols=159 Identities=24% Similarity=0.217 Sum_probs=115.2
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
...+.++|+++|++|+|||||+|+|.+..+.. ..+++ +.....+.+ ++..+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~--~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTI--GFNVETVTY-KNLKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCS--SEEEEEEEE-TTEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcC--ccceEEEEE-CCEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 44567899999999999999999998876542 23322 333445555 689999999999999999999999999999
Q ss_pred EEEEeccCCCChhH-HHHHHHHhh----cCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 265 VLVVAADDGVMPQT-LEAIAHANA----ANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 265 llVvDa~~g~~~~~-~~~i~~~~~----~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
++|+|++++..... ...+..+.. .+.|+++|+||+|+.+.. ...+...+..... . ...++++++||++|.
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~ 154 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPAL--K--DRKWQIFKTSATKGT 154 (171)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC--T--TSCEEEEECCTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhc--c--CCceEEEECcCCCCc
Confidence 99999998643322 223332222 578999999999997542 2233222211111 1 123589999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++++++|....
T Consensus 155 gi~~l~~~l~~~i 167 (171)
T 1upt_A 155 GLDEAMEWLVETL 167 (171)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 43
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.86 E-value=2.3e-21 Score=185.00 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=113.8
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccc-cccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccE
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDI 263 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~-~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDi 263 (581)
.....++|+|+|++|+|||||+++|.+..+.. ...+++. .....+.. .+..+.||||||++.+..++..+++.+|+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 89 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEK-GRVAFTVFDMGGAKKFRGLWETYYDNIDA 89 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEe-CCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence 34456799999999999999999999988765 4444333 22333444 78999999999999999999999999999
Q ss_pred EEEEEeccCCCChhHH-HHHHHHhhc-----------CCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEE
Q 008003 264 VVLVVAADDGVMPQTL-EAIAHANAA-----------NVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVV 330 (581)
Q Consensus 264 vllVvDa~~g~~~~~~-~~i~~~~~~-----------~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii 330 (581)
+|+|+|++++...... ..+..+... ++|+++|+||+|+.... .+.+...+. .........++++
T Consensus 90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 166 (199)
T 4bas_A 90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILD---LTTLMGDHPFVIF 166 (199)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHT---HHHHHTTSCEEEE
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhc---chhhccCCeeEEE
Confidence 9999999985432222 333333222 78999999999997542 222222221 1110011346899
Q ss_pred EEeccCCCChhhHHHHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~~~~ 352 (581)
++||++|.|+++++++|.....
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 167 ASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHH
T ss_pred EeeCCCccCHHHHHHHHHHHHH
Confidence 9999999999999999987553
No 44
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.86 E-value=9.7e-22 Score=228.02 Aligned_cols=246 Identities=24% Similarity=0.281 Sum_probs=168.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cc---------------cccCceeEeeeeEEEeec---------------CC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VA---------------KEAGGITQHMGAFVVGMS---------------TG 236 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~---------------~~~~g~T~d~~~~~~~~~---------------~g 236 (581)
+.++|+|+||+|||||||+++|+.... .. ...+|+|.......+.+. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 346899999999999999999976421 11 123455554444444331 26
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCC----CChhhHH--
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA----ADPERVK-- 310 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~----~~~~~~~-- 310 (581)
+.++|||||||.+|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+.. .++++..
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~~~ 177 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQT 177 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHHHH
Confidence 8899999999999999999999999999999999999999999988888888999999999999852 2222221
Q ss_pred --hhhhhccchhhh----------cC-CcceEEEEeccCCCCh-------------------------------------
Q 008003 311 --NQLGAEGLELED----------WG-GKVQVVEVSAVKKTGL------------------------------------- 340 (581)
Q Consensus 311 --~~l~~~~~~~~~----------~~-~~~~ii~iSAktg~gI------------------------------------- 340 (581)
..+......+.. +. ...++...|+++|.|+
T Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~ 257 (842)
T 1n0u_A 178 FARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKW 257 (842)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTEE
T ss_pred HHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCeE
Confidence 111111111100 00 0124566677554221
Q ss_pred --------------------------------------------------------------------------hhHHHH
Q 008003 341 --------------------------------------------------------------------------DDLEVA 346 (581)
Q Consensus 341 --------------------------------------------------------------------------~eLl~~ 346 (581)
+.|++.
T Consensus 258 ~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LLd~ 337 (842)
T 1n0u_A 258 TNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEM 337 (842)
T ss_dssp ESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHHHH
T ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHHHH
Confidence 222333
Q ss_pred HHHHHHHhh-----------------------cccccCCCcceEEEEEEeecCCCc-EEEEEEeccEEeeCcEEEE-ccc
Q 008003 347 LLLQAEMMN-----------------------LKARVDGPAQAYVVEARLDKGRGP-LTTAIVKAGTLVCGQHVVV-GHE 401 (581)
Q Consensus 347 L~~~~~~~~-----------------------~~~~~~~~~~~~V~e~~~~~~~G~-v~~~~V~~GtLk~gd~i~~-g~~ 401 (581)
|......+. ...+++.|+.++|+....++..|. ++.++|.+|+|+.|+.|.+ ++.
T Consensus 338 i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~ 417 (842)
T 1n0u_A 338 IVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPN 417 (842)
T ss_dssp HHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTT
T ss_pred HHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEecccc
Confidence 322110000 012456788999999999999996 9999999999999999965 221
Q ss_pred -------------cceEEEEEcccCCcccccCCCCcEEEeccCCC
Q 008003 402 -------------WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGL 433 (581)
Q Consensus 402 -------------~~kVk~i~~~~g~~v~~a~~~~~v~i~gl~~~ 433 (581)
.+++..+.+.....++++.+|+.+.|.|+.+.
T Consensus 418 ~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~ 462 (842)
T 1n0u_A 418 YVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQF 462 (842)
T ss_dssp CCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTT
T ss_pred ccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccc
Confidence 12344556666778999999999999999876
No 45
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=185.05 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=119.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
..++|+++|++|+|||||+|+|.+..+.....++++.+.....+.+ ++ ..+.||||||++.+..++..+++.+|+++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 4579999999999999999999998887777788888887777777 44 67999999999999999999999999999
Q ss_pred EEEeccCCCC----hhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 266 LVVAADDGVM----PQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 266 lVvDa~~g~~----~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|+|+++... ..+...+......++|+++|+||+|+......... ..... ...+ .++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~~~~---~~~~--~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT-TAKEF---ADSL--GIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHH-HHHHH---HHHT--TCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHH-HHHHH---HHHc--CCcEEEEeCCCCCCHH
Confidence 9999987332 22233333333447899999999999643211100 00000 0111 2589999999999999
Q ss_pred hHHHHHHHHHH
Q 008003 342 DLEVALLLQAE 352 (581)
Q Consensus 342 eLl~~L~~~~~ 352 (581)
+++++|.....
T Consensus 168 ~l~~~l~~~i~ 178 (196)
T 3tkl_A 168 QSFMTMAAEIK 178 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987553
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.86 E-value=4.6e-21 Score=180.97 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=118.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
.+.++|+++|++|+|||||+++|.+..+.....++++.++....+.. ++ ..+.||||||++.+...+..++..+|++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 34589999999999999999999998877767777777777666666 44 6899999999999999999999999999
Q ss_pred EEEEeccCCCChh----HHHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 265 VLVVAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 265 llVvDa~~g~~~~----~~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
++|+|++++...+ +...+......++|+++|+||+|+.... ..+..... .. ..++++++||++|
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~--~~~~~~~~Sa~~~ 157 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFA-------QE--NELMFLETSALTG 157 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-------HH--TTCEEEECCTTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHH-------HH--cCCEEEEecCCCC
Confidence 9999998743322 2222333334678999999999995321 11111111 11 1358999999999
Q ss_pred CChhhHHHHHHHHH
Q 008003 338 TGLDDLEVALLLQA 351 (581)
Q Consensus 338 ~gI~eLl~~L~~~~ 351 (581)
.|+++++++|....
T Consensus 158 ~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 158 ENVEEAFVQCARKI 171 (186)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 47
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.8e-21 Score=182.46 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=110.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
++.++|+++|++|+|||||+++|.+..+. ...+ |.+.....+.+ ++..+.+|||||++.+...+..+++.+|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP--TIGSNVEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEEC--CSCSSCEEEEE-TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcC--CCccceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45689999999999999999999977665 2333 22344455556 68999999999999999999899999999999
Q ss_pred EEeccCCCChhH-HHHHHHHh----hcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQT-LEAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~-~~~i~~~~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|++++...+. ...+..+. ..+.|+++|+||+|+.... .+++...+.... .. ...++++++||++|.|+
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~--~~--~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS--IK--DHQWHIQACCALTGEGL 165 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG--CC--SSCEEEEECBTTTTBTH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhh--hc--CCCcEEEEccCCCCcCH
Confidence 999998643332 22333332 2578999999999997532 233322222110 11 12358999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++++++|.+..
T Consensus 166 ~~l~~~l~~~~ 176 (187)
T 1zj6_A 166 CQGLEWMMSRL 176 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998755
No 48
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=1.2e-21 Score=211.93 Aligned_cols=161 Identities=19% Similarity=0.324 Sum_probs=120.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCc----------chhhHHHh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH----------AAFSAMRK 255 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~----------~~~~~~~~ 255 (581)
...++|+++|+||||||||+|+|.+... ..+..+|+|++.....+.+ ++..+.||||||+ +.|..++.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 3568999999999999999999998765 4678899999998888887 7889999999998 55655544
Q ss_pred -hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChh---hHHhhhhhccchhhhcCCcceEEE
Q 008003 256 -RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE---RVKNQLGAEGLELEDWGGKVQVVE 331 (581)
Q Consensus 256 -~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~---~~~~~l~~~~~~~~~~~~~~~ii~ 331 (581)
.+++.+|++++|+|++++...++...+..+...++|+++|+||+|+.+.... +....+... +. .....++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~---l~-~~~~~~~~~ 327 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDH---FQ-FLDYAPILF 327 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHH---CG-GGTTSCEEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHh---cc-cCCCCCEEE
Confidence 5788999999999999999999888888887889999999999999754321 222222211 11 112468999
Q ss_pred EeccCCCChhhHHHHHHHHHH
Q 008003 332 VSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 332 iSAktg~gI~eLl~~L~~~~~ 352 (581)
+||++|.|+++|++.+.....
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 49
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.85 E-value=1.1e-21 Score=183.65 Aligned_cols=155 Identities=17% Similarity=0.082 Sum_probs=113.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC--CeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST--GASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~--g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
+..+|+++|++|+|||||+++|.+..+.....++++.++....+.+++ ...+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 84 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL 84 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence 457999999999999999999998877655555555566666666633 278999999999999999999999999999
Q ss_pred EEEeccCCCChhHHH-HHHHHhh-----cCCC-EEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEecc
Q 008003 266 LVVAADDGVMPQTLE-AIAHANA-----ANVP-IVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (581)
Q Consensus 266 lVvDa~~g~~~~~~~-~i~~~~~-----~~~p-iIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAk 335 (581)
+|+|++++...+... .+..+.. .+.| +++|+||+|+.+.. .+....... .. .++++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~ 155 (178)
T 2hxs_A 85 LVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-------EN--GFSSHFVSAK 155 (178)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-------HH--TCEEEEECTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-------Hc--CCcEEEEeCC
Confidence 999998743222221 1222221 2566 89999999995321 111111111 11 2489999999
Q ss_pred CCCChhhHHHHHHHHH
Q 008003 336 KKTGLDDLEVALLLQA 351 (581)
Q Consensus 336 tg~gI~eLl~~L~~~~ 351 (581)
+|.|+++++++|....
T Consensus 156 ~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 156 TGDSVFLCFQKVAAEI 171 (178)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998754
No 50
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.85 E-value=1.5e-21 Score=184.07 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=89.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
..++|+++|++|+|||||+++|.+..+.....++++.++....+.+ ++ ..+.||||||++.|...+..+++.+|+++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 3579999999999999999999988877666777888877777766 45 78999999999999998889999999999
Q ss_pred EEEeccCCCChhHH-HHHHHHh---hcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 266 LVVAADDGVMPQTL-EAIAHAN---AANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 266 lVvDa~~g~~~~~~-~~i~~~~---~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
+|+|++++...+.. ..+..+. ..++|+++|+||+|+.+.. .+....... .+ .++++++||++|.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------~~--~~~~~~~Sa~~~~ 156 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLAL-------DY--GIKFMETSAKANI 156 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-------HH--TCEEEECCC---C
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHH-------Hc--CCeEEEEeCCCCC
Confidence 99999874322222 2222222 2478999999999996431 122211111 11 2489999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++++++|....
T Consensus 157 ~i~~l~~~l~~~i 169 (183)
T 2fu5_C 157 NVENAFFTLARDI 169 (183)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
No 51
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=183.20 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=115.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
..++|+++|++|+|||||+|+|.+..+.....++++.+.....+.+ ++ ..+.||||||++.+...+..++..+|+++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 4579999999999999999999998887777888888887777777 55 78999999999999999999999999999
Q ss_pred EEEeccCCCChhHHH-HHHHHh--hcCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 266 LVVAADDGVMPQTLE-AIAHAN--AANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 266 lVvDa~~g~~~~~~~-~i~~~~--~~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
+|+|++++...+... .+..+. ..+.|+++|+||+|+..... ........ .. .++++++||++|.|
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~~g 157 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAG-------QM--GIQLFETSAKENVN 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-------HH--TCCEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHH-------Hc--CCeEEEEECCCCCC
Confidence 999998843322222 222222 23589999999999864221 11111111 11 24799999999999
Q ss_pred hhhHHHHHHHHHH
Q 008003 340 LDDLEVALLLQAE 352 (581)
Q Consensus 340 I~eLl~~L~~~~~ 352 (581)
+++++++|.....
T Consensus 158 i~~l~~~l~~~~~ 170 (181)
T 3tw8_B 158 VEEMFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987543
No 52
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.85 E-value=6.9e-21 Score=175.81 Aligned_cols=153 Identities=22% Similarity=0.191 Sum_probs=110.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEe
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvD 269 (581)
.+|+++|++|+|||||+++|.+..+.. ..+ |.+.....+.. ++..+.+|||||++.+..++..++..+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCC--CSSCCEEEEEC-SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccC--cCceeEEEEEE-CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 479999999999999999998876543 333 33344455555 77999999999999999999999999999999999
Q ss_pred ccCCCChhH-HHHHHHHhh----cCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 270 ADDGVMPQT-LEAIAHANA----ANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 270 a~~g~~~~~-~~~i~~~~~----~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
++++..... ...+..+.. .+.|+++|+||+|+.+... ..+...+. ..... ...++++++||++|.|++++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLR-HRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---GGGCS-SCCEEEEECBTTTTBTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhC---ccccc-CccEEEEEcccCCCcCHHHH
Confidence 987532222 222333222 3789999999999965422 22222221 11100 12357999999999999999
Q ss_pred HHHHHHH
Q 008003 344 EVALLLQ 350 (581)
Q Consensus 344 l~~L~~~ 350 (581)
+++|...
T Consensus 153 ~~~l~~~ 159 (164)
T 1r8s_A 153 LDWLSNQ 159 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999764
No 53
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.85 E-value=5.1e-21 Score=182.10 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=114.8
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
..++.++|+++|++|+|||||+|+|.+..+.....+++..++. .+.. .+..+.||||||++.+..++..++..+|++
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK-GNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE-TTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe-CCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 3455689999999999999999999988776544454444433 3444 789999999999999999999999999999
Q ss_pred EEEEeccCCCChhH-HHHHHHHh----hcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 265 VLVVAADDGVMPQT-LEAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 265 llVvDa~~g~~~~~-~~~i~~~~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
++|+|+++....+. ...+..+. ..++|+++|+||+|+.... ...+...+. .... .....+++++||++|.
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMN---LSAI-QDREICCYSISCKEKD 170 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT---GGGC-CSSCEEEEECCTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhC---hhhh-ccCCeeEEEEECCCCC
Confidence 99999987433222 22233322 2578999999999997542 222222221 1110 1134589999999999
Q ss_pred ChhhHHHHHHHH
Q 008003 339 GLDDLEVALLLQ 350 (581)
Q Consensus 339 gI~eLl~~L~~~ 350 (581)
|+++|+++|...
T Consensus 171 gv~~l~~~l~~~ 182 (188)
T 1zd9_A 171 NIDITLQWLIQH 182 (188)
T ss_dssp THHHHHHHHHHT
T ss_pred CHHHHHHHHHHH
Confidence 999999999763
No 54
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=2.2e-21 Score=187.39 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=116.3
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccc
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVT 261 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~a 261 (581)
......++|+++|++|+|||||+++|.+..+.....++++.++....+.+ ++ ..+.||||||++.+...+..++..+
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 33456789999999999999999999988877667777777777777776 55 6899999999999998888899999
Q ss_pred cEEEEEEeccCCCCh----hHHHHHHHHhhcCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEEEecc
Q 008003 262 DIVVLVVAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (581)
Q Consensus 262 DivllVvDa~~g~~~----~~~~~i~~~~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAk 335 (581)
|++++|+|++++... .+...+......++|+++|+||+|+..... +....... .+ .++++++||+
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~ 164 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK-------EL--GIPFIESSAK 164 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHH-------HH--TCCEEECBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHH-------Hc--CCEEEEEeCC
Confidence 999999999874322 222222222334789999999999943211 11111111 11 2479999999
Q ss_pred CCCChhhHHHHHHHHH
Q 008003 336 KKTGLDDLEVALLLQA 351 (581)
Q Consensus 336 tg~gI~eLl~~L~~~~ 351 (581)
+|.|+++++++|....
T Consensus 165 ~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 165 NDDNVNEIFFTLAKLI 180 (213)
T ss_dssp TTBSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 55
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.85 E-value=1.6e-21 Score=180.79 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=110.0
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.++|+++|++|+|||||+|+|.+..+.....++++.++....+.+++ ...+.||||||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 46899999999999999999999887766677777777666666632 36899999999999998888899999999999
Q ss_pred EeccCCCCh----hHHHHHHHHhhcCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 268 VAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 268 vDa~~g~~~----~~~~~i~~~~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|++++... .+...+......+.|+++|+||+|+..... +....... .. .++++++||++|.|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~~gv~ 153 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK-------EL--GIPFIESSAKNDDNVN 153 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHH-------HH--TCCEEECBTTTTBSHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHH-------Hc--CCeEEEEECCCCCCHH
Confidence 999874322 222222222234789999999999943211 11111111 11 2479999999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
+++++|....
T Consensus 154 ~l~~~l~~~~ 163 (170)
T 1g16_A 154 EIFFTLAKLI 163 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 56
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=5.4e-21 Score=179.27 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=107.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDI 263 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDi 263 (581)
.+.++|+++|++|+|||||+|+|.+..+. ....++++.++....+.. ++ ..+.+|||||++.+...+..++..+|+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 45679999999999999999999988774 345566666666655555 44 589999999999999999999999999
Q ss_pred EEEEEeccCCCChh----HHHHHHHHhhcCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 264 VVLVVAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 264 vllVvDa~~g~~~~----~~~~i~~~~~~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
+++|+|++++...+ +...+......++|+++|+||+|+..... +....... .. .++++++||++
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~ 157 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK-------EY--GLPFMETSAKT 157 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHH-------HH--TCCEEECCTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHH-------Hc--CCeEEEEeCCC
Confidence 99999998743222 22223322235789999999999964321 11111111 11 24799999999
Q ss_pred CCChhhHHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQA 351 (581)
Q Consensus 337 g~gI~eLl~~L~~~~ 351 (581)
|.|+++++++|....
T Consensus 158 ~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 158 GLNVDLAFTAIAKEL 172 (180)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998754
No 57
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.85 E-value=4e-21 Score=185.21 Aligned_cols=155 Identities=12% Similarity=0.179 Sum_probs=109.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
.+.++|+++|++|+|||||+++|.+..+.....++++.++....+.+ ++ ..+.||||||++.|..++..+++.+|++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 44579999999999999999999988876655666666666666666 44 6899999999999999999999999999
Q ss_pred EEEEeccCCCChh----HHHHHHHHhhcCCCEEEEEeCCCCCCC---ChhhHHhhhhhccchhhhcCCcc-eEEEEeccC
Q 008003 265 VLVVAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAA---DPERVKNQLGAEGLELEDWGGKV-QVVEVSAVK 336 (581)
Q Consensus 265 llVvDa~~g~~~~----~~~~i~~~~~~~~piIvViNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~-~ii~iSAkt 336 (581)
|+|+|+++....+ +...+......++|+++|+||+|+... ..++....... . .+ +++++||++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-------~--~~~~~~~~SA~~ 176 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-------Y--DILCAIETSAKD 176 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------T--TCSEEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHH-------c--CCCEEEEEeCCC
Confidence 9999998742222 222222222356899999999999632 11222211111 1 23 799999999
Q ss_pred CCChhhHHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQA 351 (581)
Q Consensus 337 g~gI~eLl~~L~~~~ 351 (581)
|.|+++++++|....
T Consensus 177 g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 177 SSNVEEAFLRVATEL 191 (201)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998754
No 58
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.85 E-value=8.3e-21 Score=177.52 Aligned_cols=155 Identities=19% Similarity=0.156 Sum_probs=113.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
+.++|+++|++|+|||||+|+|.+..+.....++++.++....+.+ ++ ..+.||||||++.+...+..+++.+|+++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 3579999999999999999999988877666677777766666666 44 68999999999999999999999999999
Q ss_pred EEEeccCCCChh----HHHHHHHHhh----cCCCEEEEEeCCCCCCCC--hhhHHhhhhhccchhhhcCCcceEEEEecc
Q 008003 266 LVVAADDGVMPQ----TLEAIAHANA----ANVPIVVAINKCDKPAAD--PERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (581)
Q Consensus 266 lVvDa~~g~~~~----~~~~i~~~~~----~~~piIvViNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~ii~iSAk 335 (581)
+|+|++++...+ +...+..... .++|+++|+||+|+.... .+....... .....+++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~--------~~~~~~~~~~Sa~ 156 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR--------DNGDYPYFETSAK 156 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH--------HTTCCCEEECCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH--------hcCCceEEEEeCC
Confidence 999998743222 2222322222 578999999999996321 122111111 0124589999999
Q ss_pred CCCChhhHHHHHHHHH
Q 008003 336 KKTGLDDLEVALLLQA 351 (581)
Q Consensus 336 tg~gI~eLl~~L~~~~ 351 (581)
+|.|+++++++|....
T Consensus 157 ~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 157 DATNVAAAFEEAVRRV 172 (177)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998754
No 59
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.85 E-value=7.6e-21 Score=181.04 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=114.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC------------------------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG------------------------------ 236 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g------------------------------ 236 (581)
...++|+++|++|+|||||+|+|.+..+.....++++.++....+.+ ++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET-TC------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe-cCcccccccccccccccccccccccccccccc
Confidence 34689999999999999999999998776656666666665555555 22
Q ss_pred ---------eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHH-HHHHHh-hcCCCEEEEEeCCCCCCC-
Q 008003 237 ---------ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE-AIAHAN-AANVPIVVAINKCDKPAA- 304 (581)
Q Consensus 237 ---------~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~-~i~~~~-~~~~piIvViNK~Dl~~~- 304 (581)
..+.||||||++.+...+..+++.+|++++|+|++++...+... .+..+. ..+.|+++|+||+|+...
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ 163 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc
Confidence 78999999999999999999999999999999998854333322 222222 245899999999994221
Q ss_pred -ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 305 -DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 305 -~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
..+........ . .++++++||++|.|+++++++|....
T Consensus 164 ~~~~~~~~~~~~-------~--~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 164 VDILEVQKYAQD-------N--NLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp SCHHHHHHHHHH-------T--TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-------c--CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 11222222211 1 34899999999999999999997654
No 60
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.85 E-value=1e-21 Score=184.75 Aligned_cols=150 Identities=22% Similarity=0.262 Sum_probs=111.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh----H--H--Hhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS----A--M--RKRGA 258 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~----~--~--~~~~~ 258 (581)
++.+|+++|++|+|||||+|+|.+... ..+..+++|++.....+.+ ++..+.+|||||++.+. . . ...++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 467999999999999999999998764 3566788998888888877 78889999999986532 1 1 12457
Q ss_pred ccccEEEEEEeccCCCChhHHHHHHHHh---hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEecc
Q 008003 259 AVTDIVVLVVAADDGVMPQTLEAIAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (581)
Q Consensus 259 ~~aDivllVvDa~~g~~~~~~~~i~~~~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAk 335 (581)
+.+|++++|+|+++....+....+..+. ..++|+++|+||+|+...... .. .. ...+++++||+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-----~~-------~~-~~~~~~~~SA~ 148 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG-----MS-------EV-NGHALIRLSAR 148 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----EE-------EE-TTEEEEECCTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh-----hh-------hc-cCCceEEEeCC
Confidence 8999999999998865544333333332 236899999999998532110 00 00 13589999999
Q ss_pred CCCChhhHHHHHHHHH
Q 008003 336 KKTGLDDLEVALLLQA 351 (581)
Q Consensus 336 tg~gI~eLl~~L~~~~ 351 (581)
+|.|+++|+++|....
T Consensus 149 ~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 149 TGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TCTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 61
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.85 E-value=2.4e-21 Score=181.58 Aligned_cols=161 Identities=18% Similarity=0.160 Sum_probs=104.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec--CCeEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~--~g~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
.+.++|+++|++|+|||||+++|.+..+.....++++.++....+.++ ....+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 345799999999999999999999988766666666666766666653 246899999999999999999999999999
Q ss_pred EEEEeccCCCChhHH----HHHHHHhh----cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 265 VLVVAADDGVMPQTL----EAIAHANA----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 265 llVvDa~~g~~~~~~----~~i~~~~~----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
++|+|++++...+.. ..+..... .++|+++|+||+|+.............. +.......+++++||++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~----~~~~~~~~~~~~~Sa~~ 161 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE----LAKSLGDIPLFLTSAKN 161 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH----HHHHTTSCCEEEEBTTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHH----HHHhcCCCeEEEEecCC
Confidence 999999874322222 22222221 5789999999999953211000111111 11111345899999999
Q ss_pred CCChhhHHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQA 351 (581)
Q Consensus 337 g~gI~eLl~~L~~~~ 351 (581)
|.|+++++++|....
T Consensus 162 ~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 162 AINVDTAFEEIARSA 176 (182)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998754
No 62
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.85 E-value=4.2e-21 Score=177.34 Aligned_cols=155 Identities=25% Similarity=0.289 Sum_probs=110.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+..+|+++|++|+|||||+|+|.+..+.....+++.... ...+..+ .+..+.||||||++.+..++..++..+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 357899999999999999999998776655555444333 3334332 34689999999999999999999999999999
Q ss_pred EEeccCCCCh----hHHHHHHH-HhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 267 VVAADDGVMP----QTLEAIAH-ANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 267 VvDa~~g~~~----~~~~~i~~-~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
|+|+++.... .+.+.+.. ....++|+++|+||+|+.+.. .+...... ..+ +..+++++||++|.
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~~-~~~~~~~~Sa~~~~ 152 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-------RQW-CNCAFLESSAKSKI 152 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-------HHT-TSCEEEECBTTTTB
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHH-------HHc-cCCcEEEecCCCCC
Confidence 9999873221 12222222 223478999999999995421 11111111 111 24589999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++++++|....
T Consensus 153 gi~~l~~~l~~~i 165 (167)
T 1c1y_A 153 NVNEIFYDLVRQI 165 (167)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997643
No 63
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=6.6e-21 Score=184.28 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=116.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
+.++|+++|++|+|||||+++|.+..+.....++++.++....+.+ ++ ..+.||||||++.|..++..+++.+|+++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999998877666777777777767766 44 58999999999999999999999999999
Q ss_pred EEEeccCCCC----hhHHHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 266 LVVAADDGVM----PQTLEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 266 lVvDa~~g~~----~~~~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
+|+|+++... ..+...+......++|+++|+||+|+.... .+...... ... .++++++||++|.
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-------~~~--~~~~~~~Sa~~g~ 174 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFS-------EAQ--DMYYLETSAKESD 174 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHH-------HHH--TCCEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHH-------HHc--CCEEEEEeCCCCC
Confidence 9999987432 223333333333578999999999995321 11111111 111 2579999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++++++|....
T Consensus 175 gv~~l~~~l~~~i 187 (201)
T 2ew1_A 175 NVEKLFLDLACRL 187 (201)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
No 64
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.85 E-value=2.3e-21 Score=185.28 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=111.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
...++|+++|++|+|||||+|+|.+..+.....++++.+.....+.+++ ...+.||||||++.+..++..+++.+|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3457999999999999999999999887666666666666666666622 368999999999999999999999999999
Q ss_pred EEEeccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 266 LVVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 266 lVvDa~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|+|++++...+.. ..+......++|+++|+||+|+....... ...... +.......+++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~-~~~~~~----~~~~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT-RQQGEK----FAQQITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC-HHHHHH----HHHTSTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC-HHHHHH----HHHhcCCCeEEEEeCCCCCCHH
Confidence 99999884333222 23333333478999999999995321100 001111 1111124589999999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
+++++|....
T Consensus 179 ~l~~~l~~~i 188 (192)
T 2il1_A 179 EIFLKLVDDI 188 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997643
No 65
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=3.8e-21 Score=178.40 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=108.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+.++|+++|++|+|||||+++|.+..+.....++++.++....+..+ ....+.+|||||++.+..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 35799999999999999999999887766666666666665666552 23578999999999999999999999999999
Q ss_pred EEeccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 267 VVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 267 VvDa~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|+|++++...+.. ..+......+.|+++|+||+|+.... .+...... ... ..+++++||++|.|
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~~~g 155 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYA-------ESV--GAKHYHTSAKQNKG 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHH-------HHT--TCEEEEEBTTTTBS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHH-------HHc--CCeEEEecCCCCCC
Confidence 9999874322222 22222233578999999999995421 11111111 111 25899999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+++++++|....
T Consensus 156 i~~l~~~l~~~~ 167 (170)
T 1z08_A 156 IEELFLDLCKRM 167 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997643
No 66
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.84 E-value=1.4e-21 Score=182.08 Aligned_cols=151 Identities=22% Similarity=0.286 Sum_probs=107.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh------HHHhhccc--c
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS------AMRKRGAA--V 260 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~------~~~~~~~~--~ 260 (581)
..+|+++|++|+|||||+|+|.+..+..+..+++|.+.....+.+ ++..+.+|||||++.|. .+...++. .
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 468999999999999999999988776667788888877777776 67899999999988764 33344443 7
Q ss_pred ccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 261 aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
+|++++|+|+++. ......+..+...++|+++|+||+|+..... ......+. ..+ ..+++++||++|.|
T Consensus 82 ~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~--~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 82 PDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE------KIL--GVKVVPLSAAKKMG 151 (165)
T ss_dssp CSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHH------HHH--TSCEEECBGGGTBS
T ss_pred CCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHH------HHh--CCCEEEEEcCCCCC
Confidence 9999999999862 2223344445556899999999999842110 00001111 111 24799999999999
Q ss_pred hhhHHHHHHHH
Q 008003 340 LDDLEVALLLQ 350 (581)
Q Consensus 340 I~eLl~~L~~~ 350 (581)
+++++++|...
T Consensus 152 v~~l~~~l~~~ 162 (165)
T 2wji_A 152 IEELKKAISIA 162 (165)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 67
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.84 E-value=1.2e-20 Score=178.38 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=113.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
++..+|+++|++|+|||||+|+|.+.. .....+++. .....+.+ ++..+.+|||||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEH-RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEE-TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 467899999999999999999999877 333333322 33344555 68999999999999999999999999999999
Q ss_pred EEeccCCCChhH-HHHHHHHh----hcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQT-LEAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~-~~~i~~~~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|++++...+. ...+..+. ..+.|+++|+||+|+.+.. .+.+...+..... ....++++++||++|.|+
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI----RSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC----CSSCEEEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhc----cCCceEEEEeeCCCCCCH
Confidence 999987543222 22233322 2478999999999996542 2222222211000 012458999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++++++|....
T Consensus 168 ~~l~~~l~~~i 178 (186)
T 1ksh_A 168 LPGIDWLLDDI 178 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.84 E-value=8.2e-21 Score=177.41 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=115.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
+..+|+++|++|+|||||+|+|.+..+.....++++.+.....+.+ ++ ..+.||||||++.+...+..++..+|+++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 3479999999999999999999988877777777787777777766 44 68999999999999999999999999999
Q ss_pred EEEeccCCCCh----hHHHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 266 LVVAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 266 lVvDa~~g~~~----~~~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
+|+|++++... .+...+......++|+++|+||+|+.... ......... .. .++++++||++|.
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~~ 162 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-------EL--NVMFIETSAKAGY 162 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-------HH--TCEEEEEBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHH-------Hc--CCeEEEEeCCCCC
Confidence 99999873221 12222222233578999999999995321 111111111 11 2589999999999
Q ss_pred ChhhHHHHHHH
Q 008003 339 GLDDLEVALLL 349 (581)
Q Consensus 339 gI~eLl~~L~~ 349 (581)
|+++++++|..
T Consensus 163 ~i~~l~~~l~~ 173 (179)
T 2y8e_A 163 NVKQLFRRVAA 173 (179)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999875
No 69
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.84 E-value=1e-20 Score=176.78 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=112.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+.++|+++|++|+|||||+|+|.+..+.....++++.++....+..+ ....+.||||||++.+...+..+++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEE
Confidence 45799999999999999999999887765555555444444444442 24689999999999999999999999999999
Q ss_pred EEeccCCCChhH----HHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 267 VVAADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 267 VvDa~~g~~~~~----~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|+|++++...+. ...+......+.|+++|+||+|+.... .+....... .. .++++++||++|.|
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 94 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE-------EN--GLLFLEASAKTGEN 164 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-------HT--TCEEEECCTTTCTT
T ss_pred EEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH-------Hc--CCEEEEEeCCCCCC
Confidence 999987433222 222333333578999999999995321 112211111 11 35899999999999
Q ss_pred hhhHHHHHHHH
Q 008003 340 LDDLEVALLLQ 350 (581)
Q Consensus 340 I~eLl~~L~~~ 350 (581)
+++++++|...
T Consensus 165 i~~l~~~l~~~ 175 (179)
T 1z0f_A 165 VEDAFLEAAKK 175 (179)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 70
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=5.1e-21 Score=207.05 Aligned_cols=153 Identities=18% Similarity=0.269 Sum_probs=110.6
Q ss_pred CEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcch---------hhHHHhhccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA---------FSAMRKRGAA 259 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~---------~~~~~~~~~~ 259 (581)
++|+|+|.||||||||+|+|.+.+. .+...+|+|+|.....+.+ ++..+.+|||||++. +......+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE-CCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 6899999999999999999998875 4678899999999988888 789999999999764 3345567889
Q ss_pred cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhh-hhccchhhhcCCcceEEEEeccCCC
Q 008003 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQL-GAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l-~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
.||++|+|+|++++....+......+...++|+++|+||+|+... ..... .+. ..++ ..+++++||++|.
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~----~~~~~~~~~----~~lg-~~~~~~iSA~~g~ 151 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE----FEREVKPEL----YSLG-FGEPIPVSAEHNI 151 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH----HHHHTHHHH----GGGS-SCSCEECBTTTTB
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc----cHHHHHHHH----HhcC-CCCEEEEeccCCC
Confidence 999999999999988877766666666678999999999998421 01111 111 1111 1257999999999
Q ss_pred ChhhHHHHHHHHHH
Q 008003 339 GLDDLEVALLLQAE 352 (581)
Q Consensus 339 gI~eLl~~L~~~~~ 352 (581)
|+++|+++|.....
T Consensus 152 gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 152 NLDTMLETIIKKLE 165 (439)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999987553
No 71
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.84 E-value=9.7e-21 Score=178.84 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=111.0
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
...+.++|+++|++|+|||||+|+|.+..+. ...+ |.......+.+ ++..+.||||||++.+..++..++..+|++
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 92 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP--TIGSNVEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEFV 92 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCE-EEEC--CSSSSCEEEEE-TTEEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCC-ccCC--cCceeeEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3456789999999999999999999987762 1222 11233345555 679999999999999999999999999999
Q ss_pred EEEEeccCCCChhH-HHHHHHHh----hcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 265 VLVVAADDGVMPQT-LEAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 265 llVvDa~~g~~~~~-~~~i~~~~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
++|+|+++....+. ...+..+. ..++|+++|+||+|+... +.+.+...+..... ....++++++||++|.
T Consensus 93 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 93 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI----KDHQWHIQACCALTGE 168 (181)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC----CSSCEEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccc----cCCceEEEEccCCCCc
Confidence 99999998644332 23333332 257899999999999653 22333222211100 1123589999999999
Q ss_pred ChhhHHHHHHH
Q 008003 339 GLDDLEVALLL 349 (581)
Q Consensus 339 gI~eLl~~L~~ 349 (581)
|+++++++|..
T Consensus 169 gi~~l~~~l~~ 179 (181)
T 2h17_A 169 GLCQGLEWMMS 179 (181)
T ss_dssp THHHHHHHHHT
T ss_pred CHHHHHHHHHh
Confidence 99999999864
No 72
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.84 E-value=7.6e-21 Score=178.41 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=113.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+..+|+++|++|+|||||+++|.+..+.....++++.++....+.+. .+..+.||||||++.+...+..+++.+|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 345799999999999999999999887766555555555555555542 2468999999999999999999999999999
Q ss_pred EEEeccCCCChhH-HHHHHHHhh---cCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 266 LVVAADDGVMPQT-LEAIAHANA---ANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 266 lVvDa~~g~~~~~-~~~i~~~~~---~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
+|+|++++...+. ...+..+.. .++|+++|+||+|+.... .+....... . ..++++++||++|.
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-------~--~~~~~~~~Sa~~g~ 160 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQ-------E--NGLFFMETSAKTAT 160 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-------H--TTCEEEECCSSSCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHH-------H--cCCEEEEEECCCCC
Confidence 9999987433222 222233322 378899999999996432 111111111 1 13589999999999
Q ss_pred ChhhHHHHHHHH
Q 008003 339 GLDDLEVALLLQ 350 (581)
Q Consensus 339 gI~eLl~~L~~~ 350 (581)
|+++++++|...
T Consensus 161 gi~~l~~~l~~~ 172 (181)
T 2efe_B 161 NVKEIFYEIARR 172 (181)
T ss_dssp THHHHHHHHHHT
T ss_pred CHHHHHHHHHHH
Confidence 999999999763
No 73
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=178.99 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=112.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
..+.++|+++|++|+|||||+|+|.+.. +.....+ |.+.....+.+ ++..+.||||||++.+...+..++..+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP--TIGFSIEKFKS-SSLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCC--CSSEEEEEEEC-SSCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCC--ccceeEEEEEE-CCEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 3467899999999999999999999877 3333333 33344555666 679999999999999999999999999999
Q ss_pred EEEEeccCCCChhH-HHHHHHHhh------cCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 265 VLVVAADDGVMPQT-LEAIAHANA------ANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 265 llVvDa~~g~~~~~-~~~i~~~~~------~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
++|+|+++....+. ...+..+.. .++|+++|+||+|+... ..+.....+....+ . ...++++++||++
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENI--K--DKPWHICASDAIK 170 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGC--C--SSCEEEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhc--c--CCceEEEEccCCC
Confidence 99999987422221 122222221 47899999999999653 22233222211110 0 1245899999999
Q ss_pred CCChhhHHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQA 351 (581)
Q Consensus 337 g~gI~eLl~~L~~~~ 351 (581)
|.|+++|+++|....
T Consensus 171 ~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 171 GEGLQEGVDWLQDQI 185 (190)
T ss_dssp TBTHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998643
No 74
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=1.6e-20 Score=176.83 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=109.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
++.++|+++|++|+|||||+++|.+..+. ...+++. .....+.+ ++..+.+|||||++.+...+..++..+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIG--FNVETLSY-KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTT--CCEEEEEE-TTEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC-ccCCcCc--cceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 46789999999999999999999987662 2222222 33344555 67999999999999999999999999999999
Q ss_pred EEeccCCCChhH-HHHHHHHh----hcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQT-LEAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~-~~~i~~~~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|++++...+. ...+..+. ..+.|+++|+||+|+.+.. .+.+...+..... .....+++++||++|.|+
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL----KDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTC----CSSCEEEEEEBGGGTBTH
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccc----cCCceEEEEccCCCCcCH
Confidence 999988644332 23333333 3578999999999996532 2223222211111 112458999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++++++|....
T Consensus 168 ~~l~~~l~~~~ 178 (183)
T 1moz_A 168 TEGLDWLIDVI 178 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 75
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=7.8e-21 Score=206.58 Aligned_cols=162 Identities=19% Similarity=0.306 Sum_probs=125.9
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeEEEEEeCCC----------cchhhHHH
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGASITFLDTPG----------HAAFSAMR 254 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG----------~~~~~~~~ 254 (581)
....++|+++|++|+|||||+|+|.+.. ...+..+|+|++.....+.. ++..++|||||| ++.|..++
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 3457899999999999999999999764 56778899999998888887 788999999999 67777766
Q ss_pred h-hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEE
Q 008003 255 K-RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVV 330 (581)
Q Consensus 255 ~-~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii 330 (581)
. .+++.+|++|+|+|++++...++...+..+...++|+++|+||+|+...+. +...+.+..... .....+++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ----FLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCG----GGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcc----cCCCCCEE
Confidence 5 478999999999999999999999888888888999999999999975432 222222222111 11246899
Q ss_pred EEeccCCCChhhHHHHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~~~~ 352 (581)
++||++|.|+++|+++|.....
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999987553
No 76
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.84 E-value=1.9e-20 Score=177.18 Aligned_cols=155 Identities=18% Similarity=0.121 Sum_probs=113.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeee-eEEEeecC----------CeEEEEEeCCCcchhhHHHhh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMG-AFVVGMST----------GASITFLDTPGHAAFSAMRKR 256 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~-~~~~~~~~----------g~~i~liDTpG~~~~~~~~~~ 256 (581)
+.++|+++|++|+|||||+|+|.+..+.....++++.++. ...+...+ ...+.||||||++.+...+..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 89 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA 89 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHH
Confidence 4579999999999999999999988776555555555555 34444422 368999999999999999999
Q ss_pred ccccccEEEEEEeccCCCChhHH-HHHHHHhh----cCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcce
Q 008003 257 GAAVTDIVVLVVAADDGVMPQTL-EAIAHANA----ANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQ 328 (581)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~~~~-~~i~~~~~----~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ 328 (581)
+++.+|++|+|+|++++...+.. ..+..+.. .++|+++|+||+|+.... .+....... .. .++
T Consensus 90 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~ 160 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-------KY--GIP 160 (195)
T ss_dssp TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-------HH--TCC
T ss_pred HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-------Hc--CCC
Confidence 99999999999999874332222 22222222 578999999999995321 111111111 11 247
Q ss_pred EEEEeccCCCChhhHHHHHHHHH
Q 008003 329 VVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 329 ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
++++||++|.|+++++++|....
T Consensus 161 ~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 161 YFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 77
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=2.2e-21 Score=186.31 Aligned_cols=163 Identities=18% Similarity=0.190 Sum_probs=105.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+.++|+++|++|+|||||+++|.+..+.....+.++.++....+.++ ....+.||||||++.+...+..++..+|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 456899999999999999999999887655444544445544555552 2367999999999999999999999999999
Q ss_pred EEEeccCCCChhH----HHHHHHHhhcCCCEEEEEeCCCCCCCChh-hHHhhhhhccchh-hhcCCcceEEEEeccCCCC
Q 008003 266 LVVAADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAADPE-RVKNQLGAEGLEL-EDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 266 lVvDa~~g~~~~~----~~~i~~~~~~~~piIvViNK~Dl~~~~~~-~~~~~l~~~~~~~-~~~~~~~~ii~iSAktg~g 339 (581)
+|+|++++...+. ...+......++|+++|+||+|+...... .......+....+ ... .++++++||++|.|
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY--GALFCETSAKDGSN 183 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH--TCEEEECCTTTCTT
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc--CCeEEEeeCCCCCC
Confidence 9999987433222 22233333347899999999998521000 0000000000000 111 34899999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+++++++|....
T Consensus 184 v~el~~~l~~~i 195 (199)
T 2p5s_A 184 IVEAVLHLAREV 195 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997643
No 78
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.84 E-value=9.1e-21 Score=174.76 Aligned_cols=154 Identities=22% Similarity=0.252 Sum_probs=106.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+..+|+++|++|+|||||+|+|.+..+.....++++... ...+..+ ....+.||||||++.+..++..++..+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 457999999999999999999998876554444443333 3333442 23589999999999999999999999999999
Q ss_pred EEeccCCCChhHH----HHHHH-HhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 267 VVAADDGVMPQTL----EAIAH-ANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 267 VvDa~~g~~~~~~----~~i~~-~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
|+|+++....... ..+.. ....++|+++|+||+|+.+.. .+....... .+ .++++++||++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~~ 152 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-------QW--NVNYVETSAKTRA 152 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-------HH--TCEEEECCTTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-------Hc--CCeEEEeCCCCCC
Confidence 9999874322221 11211 122478999999999995421 111111111 11 2479999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++++++|....
T Consensus 153 gi~~l~~~l~~~i 165 (168)
T 1u8z_A 153 NVDKVFFDLMREI 165 (168)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998643
No 79
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.84 E-value=1.7e-20 Score=180.49 Aligned_cols=159 Identities=25% Similarity=0.287 Sum_probs=105.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.+..+|+++|++|||||||+++|.+..+.. ..+ |.......+.+ ++..+.+|||||++.+..++..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVP--TLHPTSEELTI-AGMTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------C--CCCCSCEEEEE-TTEEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCC--CCCceeEEEEE-CCEEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 456799999999999999999999876532 222 22223345556 67999999999999999999999999999999
Q ss_pred EEeccCCCChhH-HHHHHHHh----hcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccch-------hh-hcCCcceEEEE
Q 008003 267 VVAADDGVMPQT-LEAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLE-------LE-DWGGKVQVVEV 332 (581)
Q Consensus 267 VvDa~~g~~~~~-~~~i~~~~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~-------~~-~~~~~~~ii~i 332 (581)
|+|++++...+. ...+..+. ..++|+++|+||+|+... +.++....+...... +. ......++++|
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 178 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEE
Confidence 999987533222 22222222 257899999999999653 233333322211100 00 01134689999
Q ss_pred eccCCCChhhHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLL 349 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~ 349 (581)
||++|+|+++++++|..
T Consensus 179 SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 179 SVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp BTTTTBSHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999999864
No 80
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.84 E-value=1.4e-20 Score=177.32 Aligned_cols=154 Identities=21% Similarity=0.208 Sum_probs=112.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
.+.++|+++|++|+|||||+|+|.+..+.....++++..+ ...+.. ++ ..+.+|||||++.+..++..+++.+|++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 4567999999999999999999998877666666665555 444444 44 4567799999999999999999999999
Q ss_pred EEEEeccCCCCh----hHHHHH-HHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEecc-
Q 008003 265 VLVVAADDGVMP----QTLEAI-AHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAV- 335 (581)
Q Consensus 265 llVvDa~~g~~~----~~~~~i-~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAk- 335 (581)
++|+|++++... .+...+ ......++|+++|+||+|+.... .+....... .+ .++++++||+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-------~~--~~~~~~~Sa~~ 164 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-------KY--NIPYIETSAKD 164 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-------HH--TCCEEEEBCSS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-------Hh--CCeEEEeccCC
Confidence 999999974222 222222 22334678999999999996421 111111111 11 2579999999
Q ss_pred CCCChhhHHHHHHHHH
Q 008003 336 KKTGLDDLEVALLLQA 351 (581)
Q Consensus 336 tg~gI~eLl~~L~~~~ 351 (581)
+|.|+++++++|....
T Consensus 165 ~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 165 PPLNVDKTFHDLVRVI 180 (183)
T ss_dssp SCBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 81
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.84 E-value=7.7e-21 Score=179.46 Aligned_cols=155 Identities=24% Similarity=0.329 Sum_probs=107.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
+..+|+++|++|+|||||+|+|.+..+.....+. +.+.....+.. ++ ..+.||||||++.+..++..++..+|+++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPT-IEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTT-CCEEEEEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-chheEEEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3578999999999999999999988765544443 33444444444 44 45788999999999999999999999999
Q ss_pred EEEeccCCCChhHHH----HHHH-HhhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 266 LVVAADDGVMPQTLE----AIAH-ANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 266 lVvDa~~g~~~~~~~----~i~~-~~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
+|+|+++....+... .+.. ....+.|+++|+||+|+..... ......+.. .. ..+++++||++|.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~g~g 152 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR------SY--GIPFIETSAKTRQG 152 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH------HH--TCCEEECCTTTCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH------Hc--CCeEEEEeCCCCCC
Confidence 999998743222221 1211 2234789999999999964321 111111111 11 24799999999999
Q ss_pred hhhHHHHHHHHHH
Q 008003 340 LDDLEVALLLQAE 352 (581)
Q Consensus 340 I~eLl~~L~~~~~ 352 (581)
+++++++|.....
T Consensus 153 i~~l~~~l~~~~~ 165 (189)
T 4dsu_A 153 VDDAFYTLVREIR 165 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 82
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.84 E-value=9.8e-21 Score=179.85 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=107.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccccccc----------ccCceeEeeeeEEE-eec-CCeEEEEEeCCCcchhhHHHh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAK----------EAGGITQHMGAFVV-GMS-TGASITFLDTPGHAAFSAMRK 255 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~----------~~~g~T~d~~~~~~-~~~-~g~~i~liDTpG~~~~~~~~~ 255 (581)
..++|+++|++|+|||||++.|.+...... ..+++..++....+ ..+ ....+.||||||++.|..++.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 357999999999999999987766432221 11222222222212 111 346899999999999999999
Q ss_pred hccccccEEEEEEeccCCCChhHHHHHHHH----h-----hcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhhhcCC
Q 008003 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHA----N-----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGG 325 (581)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~~~~~~i~~~----~-----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~ 325 (581)
.+++.+|++|+|+|++++...+..+.+..+ . ..++|+++|+||+|+.+. ..++........ +
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~--------~ 164 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE--------G 164 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT--------C
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhc--------C
Confidence 999999999999999865444443333222 1 157899999999999654 222222222211 1
Q ss_pred cceEEEEeccCCCChhhHHHHHHHHH
Q 008003 326 KVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 326 ~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
..+++++||++|.|+++++++|....
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHH
Confidence 12799999999999999999998754
No 83
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.84 E-value=2.6e-20 Score=183.13 Aligned_cols=160 Identities=14% Similarity=0.237 Sum_probs=111.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCc------ch----hhHHHhh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH------AA----FSAMRKR 256 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~------~~----~~~~~~~ 256 (581)
.+.++|+++|++|+|||||+|+|.+..+.....+++|.++....+.. ++..+.||||||+ +. +... ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIEMTTI-TA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHHHHHH-HH
Confidence 45789999999999999999999998887677788888887777776 6789999999998 33 2222 23
Q ss_pred ccccccEEEEEEeccCCCC---hhHHHHHHHHhhc--CCCEEEEEeCCCCCCCCh-h-hHHhhhhhccchhhhcCCcceE
Q 008003 257 GAAVTDIVVLVVAADDGVM---PQTLEAIAHANAA--NVPIVVAINKCDKPAADP-E-RVKNQLGAEGLELEDWGGKVQV 329 (581)
Q Consensus 257 ~~~~aDivllVvDa~~g~~---~~~~~~i~~~~~~--~~piIvViNK~Dl~~~~~-~-~~~~~l~~~~~~~~~~~~~~~i 329 (581)
.+..+|++|+|+|+++... ..+...+..+... ++|+++|+||+|+..... . .....+... ....+...++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 181 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQI---LDNVKNPIKF 181 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHH---HHHCCSCEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHH---HHhcCCCceE
Confidence 4678899999999998644 2334455555554 789999999999964321 1 111111111 1111122589
Q ss_pred EEEeccCCCChhhHHHHHHHHH
Q 008003 330 VEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 330 i~iSAktg~gI~eLl~~L~~~~ 351 (581)
+++||++|.|+++++++|....
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 84
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.84 E-value=4.6e-21 Score=177.27 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=113.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+.++|+++|++|+|||||+|+|.+..+.....++++.++....+..++ ...+.||||||++.+..++..++..+|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 457999999999999999999998877665566666666666665532 4689999999999998888889999999999
Q ss_pred EEeccCCCChhHH-HHHHHHhh--cCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQTL-EAIAHANA--ANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~i~~~~~--~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|+++....+.. ..+..+.. .+.|+++|+||+|+.... .+....... .+ .++++++||++|.|+
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAK-------RL--KLRFYRTSVKEDLNV 154 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHH-------HH--TCEEEECBTTTTBSS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHH-------Hc--CCeEEEEecCCCCCH
Confidence 9999874322221 12222221 478999999999996421 111111111 11 248999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++++++|....
T Consensus 155 ~~l~~~l~~~~ 165 (168)
T 1z2a_A 155 SEVFKYLAEKH 165 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997643
No 85
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.84 E-value=6.1e-21 Score=183.45 Aligned_cols=159 Identities=19% Similarity=0.146 Sum_probs=116.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
...++|+|+|++|+|||||+++|.+..+.....++++.+.....+..++ ...+.||||||++.+..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 3457999999999999999999999887766677777777777766632 368999999999999988888999999999
Q ss_pred EEEeccCCCChhHH----HHHHHHhh----cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 266 LVVAADDGVMPQTL----EAIAHANA----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 266 lVvDa~~g~~~~~~----~~i~~~~~----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
+|+|++++...+.. ..+..... .++|+++|+||+|+...... ....... .......+++++||++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~----~~~~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVA--TKRAQAW----CYSKNNIPYFETSAKEA 159 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSC--HHHHHHH----HHHTTSCCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccC--HHHHHHH----HHhcCCceEEEEeCCCC
Confidence 99999874322222 22222211 47899999999999632211 1111111 11113458999999999
Q ss_pred CChhhHHHHHHHHH
Q 008003 338 TGLDDLEVALLLQA 351 (581)
Q Consensus 338 ~gI~eLl~~L~~~~ 351 (581)
.|+++++++|....
T Consensus 160 ~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 160 INVEQAFQTIARNA 173 (207)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 86
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.84 E-value=1.3e-20 Score=174.24 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=109.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+..+|+++|++|+|||||+++|.+..+.....+.++.+.....+... .+..+.+|||||++.+...+..++..+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 35789999999999999999999877655444444444444444442 35789999999999999999999999999999
Q ss_pred EEeccCCCChhHH-HHHHHHh---hcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 267 VVAADDGVMPQTL-EAIAHAN---AANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~i~~~~---~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|+|++++...+.. ..+..+. ..++|+++|+||+|+.... .+....... . ...+++++||++|.|
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-------~--~~~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD-------D--NSLLFMETSAKTSMN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-------H--TTCEEEECCTTTCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHH-------H--cCCeEEEEeCCCCCC
Confidence 9999874322222 2222222 2467899999999995321 111111111 1 135899999999999
Q ss_pred hhhHHHHHHH
Q 008003 340 LDDLEVALLL 349 (581)
Q Consensus 340 I~eLl~~L~~ 349 (581)
+++|+++|..
T Consensus 156 i~~l~~~i~~ 165 (170)
T 1r2q_A 156 VNEIFMAIAK 165 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 87
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.84 E-value=2.2e-21 Score=195.14 Aligned_cols=149 Identities=21% Similarity=0.246 Sum_probs=117.0
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH----------HHhhcc-
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA----------MRKRGA- 258 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~----------~~~~~~- 258 (581)
++|+++|++|+|||||+|+|.+.....+..+|+|.+.....+.+ ++..+.||||||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 68999999999999999999999888888899999988888887 788999999999877653 334455
Q ss_pred -ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 259 -AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 259 -~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
..+|++|+|+|+++ .........++...++|+++|+||+|+..... ......+. ..+ .++++++||++
T Consensus 81 ~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~------~~l--g~~vi~~SA~~ 150 (256)
T 3iby_A 81 DLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLE------SLL--GCSVIPIQAHK 150 (256)
T ss_dssp HSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHH------HHH--CSCEEECBGGG
T ss_pred hCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHH------HHc--CCCEEEEECCC
Confidence 78999999999987 34445556677778999999999999842210 00011111 111 25899999999
Q ss_pred CCChhhHHHHHHH
Q 008003 337 KTGLDDLEVALLL 349 (581)
Q Consensus 337 g~gI~eLl~~L~~ 349 (581)
|.|+++|+++|..
T Consensus 151 g~gi~el~~~i~~ 163 (256)
T 3iby_A 151 NIGIPALQQSLLH 163 (256)
T ss_dssp TBSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHh
Confidence 9999999999975
No 88
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.84 E-value=1.9e-20 Score=179.84 Aligned_cols=155 Identities=14% Similarity=0.109 Sum_probs=112.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
..++|+++|++|+|||||+++|.+..+.....++++.++....+... .+..+.||||||++.+...+..+++.+|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 35799999999999999999999987765555545444444444442 34789999999999999999999999999999
Q ss_pred EEeccCCCChhHHH-HHHHHh---hcCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 267 VVAADDGVMPQTLE-AIAHAN---AANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 267 VvDa~~g~~~~~~~-~i~~~~---~~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|+|++++...+... .+..+. ..+.|+++|+||+|+..... +....... .+ .++++++||++|.|
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~~g 157 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD-------HL--GFEFFEASAKDNIN 157 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-------HH--TCEEEECBTTTTBS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHH-------HC--CCeEEEEECCCCCC
Confidence 99998743222222 222222 24789999999999964321 11111111 11 24899999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+++++++|....
T Consensus 158 i~~l~~~l~~~i 169 (203)
T 1zbd_A 158 VKQTFERLVDVI 169 (203)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.84 E-value=3.3e-20 Score=175.61 Aligned_cols=155 Identities=20% Similarity=0.234 Sum_probs=110.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccc-cccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~-~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+.++|+++|++|+|||||+++|.+..+.. ....|. ....+.+ ++..+.+|||||++.+...+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~----~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGF----NIKSVQS-QGFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTE----EEEEEEE-TTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCe----EEEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 356899999999999999999999875432 122222 2334455 6899999999999999999999999999999
Q ss_pred EEEeccCCCChhHH-HHHHHHh----hcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 266 LVVAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 266 lVvDa~~g~~~~~~-~~i~~~~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
+|+|+++....+.. ..+..+. ..+.|+++|+||+|+..... +.+.+.+. .... .....+++++||++|.|
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~Sa~~g~g 164 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN---LHTI-RDRVWQIQSCSALTGEG 164 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT---GGGC-CSSCEEEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhC---chhc-cCCceEEEEccCCCCCC
Confidence 99999875332222 2222221 25789999999999975422 22222221 1100 11245899999999999
Q ss_pred hhhHHHHHHHH
Q 008003 340 LDDLEVALLLQ 350 (581)
Q Consensus 340 I~eLl~~L~~~ 350 (581)
+++++++|...
T Consensus 165 i~~l~~~l~~~ 175 (181)
T 1fzq_A 165 VQDGMNWVCKN 175 (181)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999999763
No 90
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=1.5e-20 Score=173.82 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=110.8
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
..+|+++|++|+|||||+++|.+..+.....++++.+.....+.++ ....+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 4689999999999999999999887765555555555555555542 346899999999999999999999999999999
Q ss_pred EeccCCCChhHHH-HHHHH---hhcCCCEEEEEeCCCCCCCCh-hhHH-hhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 268 VAADDGVMPQTLE-AIAHA---NAANVPIVVAINKCDKPAADP-ERVK-NQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 268 vDa~~g~~~~~~~-~i~~~---~~~~~piIvViNK~Dl~~~~~-~~~~-~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|++++...+... .+..+ ...+.|+++|+||+|+..... ..+. ...... .... .++++++||++|.|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~ 157 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKL---AEEK--GLLFFETSAKTGENVN 157 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH---HHHH--TCEEEECCTTTCTTHH
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHH---HHHc--CCEEEEEeCCCCCCHH
Confidence 9998743222222 12222 234789999999999964311 1110 111110 0111 2489999999999999
Q ss_pred hHHHHHHH
Q 008003 342 DLEVALLL 349 (581)
Q Consensus 342 eLl~~L~~ 349 (581)
+++++|..
T Consensus 158 ~l~~~l~~ 165 (170)
T 1ek0_A 158 DVFLGIGE 165 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999865
No 91
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.84 E-value=6.3e-21 Score=179.59 Aligned_cols=161 Identities=18% Similarity=0.208 Sum_probs=109.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+..+|+++|++|+|||||+++|.+..+.....+.+. +.....+... ....+.||||||++.|..++..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccc-ceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 457999999999999999999998776544444332 2223333441 23567799999999999999999999999999
Q ss_pred EEeccCCCChhHHH--HHHHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhhh---------ccchhhhcCCcceEEEEe
Q 008003 267 VVAADDGVMPQTLE--AIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGA---------EGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 267 VvDa~~g~~~~~~~--~i~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~ii~iS 333 (581)
|+|++++...+... .+..+.. .+.|+++|+||+|+..... ....+.. ....+....+..+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHH--HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccch--hhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99998743322221 2222322 2789999999999964311 1111000 001111111224899999
Q ss_pred ccCCCChhhHHHHHHHHH
Q 008003 334 AVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 334 Aktg~gI~eLl~~L~~~~ 351 (581)
|++|.|+++++++|....
T Consensus 161 a~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHH
Confidence 999999999999998754
No 92
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.84 E-value=8.1e-21 Score=181.27 Aligned_cols=160 Identities=19% Similarity=0.216 Sum_probs=111.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+..+|+++|++|+|||||+++|.+..+.....+++..++.. .+... ....+.||||||++.|..++..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 456899999999999999999999988765555555444433 34342 2356799999999999999999999999999
Q ss_pred EEEeccCCCChhHH-H-HHHHHh--hcCCCEEEEEeCCCCCCCChhhH-HhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 266 LVVAADDGVMPQTL-E-AIAHAN--AANVPIVVAINKCDKPAADPERV-KNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 266 lVvDa~~g~~~~~~-~-~i~~~~--~~~~piIvViNK~Dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
+|+|+++....... . .+..+. ..++|+++|+||+|+........ ........ ..+ +...++++||++|.|+
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC---QKL-GCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH---HHH-TCSCEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHH---Hhc-CCCEEEEeecCCCCCH
Confidence 99999874322221 1 112222 23689999999999964311111 11111110 111 1123999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++++++|....
T Consensus 176 ~~l~~~l~~~i 186 (194)
T 3reg_A 176 NEVFEKSVDCI 186 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 93
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.84 E-value=1.3e-20 Score=179.56 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=110.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
....+|+++|++|+|||||+++|.+..+.....++++.++....+..+ ....+.||||||++.|..++..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 345799999999999999999999887765555555555555555552 2368999999999999988888999999999
Q ss_pred EEEeccCCCChhHH-HHHHHHh---hcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 266 LVVAADDGVMPQTL-EAIAHAN---AANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 266 lVvDa~~g~~~~~~-~~i~~~~---~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
+|+|+++....+.. ..+..+. ..+.|+++|+||+|+.... .+....... .. .++++++||++|.
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------~~--~~~~~~~Sa~~~~ 169 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR-------EH--GLIFMETSAKTAC 169 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-------HH--TCEEEEECTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHH-------Hc--CCEEEEEeCCCCC
Confidence 99999874322221 2222222 3478999999999995321 111111111 11 2489999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++++++|....
T Consensus 170 gi~~l~~~l~~~i 182 (191)
T 2a5j_A 170 NVEEAFINTAKEI 182 (191)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997654
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.84 E-value=1.9e-20 Score=179.21 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=107.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
++..+|+++|++|+|||||+++|.+..+.. ..+ |.+.....+.. ++..+.+|||||++.+...+..++..+|++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEY-KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEE--ETTEEEEEEEE-TTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCC--cCceeEEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 456899999999999999999998877653 222 33344445555 78999999999999999888889999999999
Q ss_pred EEeccCCCChhH-HHHHHHHhh----cCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQT-LEAIAHANA----ANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~-~~~i~~~~~----~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|++++...+. ...+..+.. .+.|+++|+||+|+.... .+.+...+. .... ....++++++||++|.|+
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---~~~~-~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLG---LQHL-RSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---GGGC-SSCCEEEEECBTTTTBTH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhC---cccc-cCCceEEEECcCCCcCCH
Confidence 999987533222 222333222 378999999999996542 222222221 1110 012357999999999999
Q ss_pred hhHHHHHHHH
Q 008003 341 DDLEVALLLQ 350 (581)
Q Consensus 341 ~eLl~~L~~~ 350 (581)
++++++|...
T Consensus 179 ~~l~~~l~~~ 188 (192)
T 2b6h_A 179 YDGLDWLSHE 188 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 95
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.84 E-value=8.7e-21 Score=174.73 Aligned_cols=154 Identities=22% Similarity=0.249 Sum_probs=108.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+..+|+++|++|+|||||+|+|.+..+.....++++.. ....+..+ ....+.||||||++.+..++..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 45789999999999999999999887665444444332 23444442 23569999999999999999999999999999
Q ss_pred EEeccCCCChhHH-HHH----HHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 267 VVAADDGVMPQTL-EAI----AHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~i----~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
|+|+++....+.. ..+ ......+.|+++|+||+|+.... ........ ... .++++++||++|.
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~~~ 151 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA-------EEW--GCPFMETSAKSKT 151 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-------HHH--TSCEEEECTTCHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH-------HHh--CCCEEEecCCCCc
Confidence 9999874322211 111 22223578999999999985321 11111111 111 2479999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++++++|....
T Consensus 152 gi~~l~~~l~~~~ 164 (167)
T 1kao_A 152 MVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
No 96
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.83 E-value=1.4e-20 Score=181.30 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=115.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+.++|+++|++|+|||||+++|.+..+.....++++.++....+.+++ ...+.||||||++.|...+..+++.+|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vil 86 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 86 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEE
Confidence 457999999999999999999999887766667777776666666522 3589999999999999999999999999999
Q ss_pred EEeccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 267 VVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 267 VvDa~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|+|++++...+.. ..+......+.|+++|+||+|+..... +.... +. ... .++++++||++|.|
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~------~~~--~~~~~~~Sa~~g~g 157 (206)
T 2bcg_Y 87 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKE-FA------DAN--KMPFLETSALDSTN 157 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHH-HH------HHT--TCCEEECCTTTCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHH-HH------HHc--CCeEEEEeCCCCCC
Confidence 9999874332222 222222234689999999999964321 11111 11 111 25899999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+++++++|....
T Consensus 158 i~~l~~~l~~~i 169 (206)
T 2bcg_Y 158 VEDAFLTMARQI 169 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 97
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.83 E-value=1.9e-20 Score=181.42 Aligned_cols=161 Identities=25% Similarity=0.293 Sum_probs=107.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC--CeEEEEEeCCCcchhhH-HHhhccccccE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST--GASITFLDTPGHAAFSA-MRKRGAAVTDI 263 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~--g~~i~liDTpG~~~~~~-~~~~~~~~aDi 263 (581)
.+.++|+++|++|+|||||+++|.+..+.... ++++.+... +.+++ +..+.+|||||++.|.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccc-CCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 45689999999999999999999988765443 344444443 44422 68899999999999988 77888999999
Q ss_pred EEEEEeccCCC--ChhHHHHHHHH------hhcCCCEEEEEeCCCCCCCC-hhhHHhhhhhc------------------
Q 008003 264 VVLVVAADDGV--MPQTLEAIAHA------NAANVPIVVAINKCDKPAAD-PERVKNQLGAE------------------ 316 (581)
Q Consensus 264 vllVvDa~~g~--~~~~~~~i~~~------~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~------------------ 316 (581)
+|+|+|+++.. .....+.+... ...++|+++|+||+|+.... .+.....+...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999998611 11112222221 13468999999999997543 22222221110
Q ss_pred ------------cchhhhcCCcceEEEEeccCC------CChhhHHHHHHHH
Q 008003 317 ------------GLELEDWGGKVQVVEVSAVKK------TGLDDLEVALLLQ 350 (581)
Q Consensus 317 ------------~~~~~~~~~~~~ii~iSAktg------~gI~eLl~~L~~~ 350 (581)
.+....+...+++++|||++| .||++++++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 000111112678999999999 9999999999753
No 98
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.83 E-value=4.2e-20 Score=176.42 Aligned_cols=159 Identities=22% Similarity=0.198 Sum_probs=110.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.+..+|+++|++|+|||||+++|.+..+.. ..+ |.+.....+.+ ++..+.+|||||++.+..++..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQP--TWHPTSEELAI-GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCC--CCSCEEEEEEE-TTEEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-ccc--CCCCCeEEEEE-CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 456799999999999999999999876542 222 22233445556 67999999999999999988899999999999
Q ss_pred EEeccCCCChhHH-HHHHHHh----hcCCCEEEEEeCCCCCCC-ChhhHHhhhhhccchhh---hcCCcceEEEEeccCC
Q 008003 267 VVAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELE---DWGGKVQVVEVSAVKK 337 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~i~~~~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~---~~~~~~~ii~iSAktg 337 (581)
|+|++++...+.. ..+..+. ..+.|+++|+||+|+... +.++..+.+........ .....++++++||++|
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 176 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR 176 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcC
Confidence 9999985432222 2222221 257899999999999753 22333332221110000 0113468999999999
Q ss_pred CChhhHHHHHHH
Q 008003 338 TGLDDLEVALLL 349 (581)
Q Consensus 338 ~gI~eLl~~L~~ 349 (581)
.|+++++++|..
T Consensus 177 ~gi~~l~~~l~~ 188 (190)
T 1m2o_B 177 NGYLEAFQWLSQ 188 (190)
T ss_dssp BSHHHHHHHHHT
T ss_pred CCHHHHHHHHHh
Confidence 999999999864
No 99
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.83 E-value=8.6e-21 Score=184.94 Aligned_cols=165 Identities=13% Similarity=0.118 Sum_probs=111.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
.....+|+++|++|+|||||+++|.+..+.....+++..++ ...+..+ ....+.||||||++.|..++..+++.+|++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 34568999999999999999999999887766566555554 2333332 347899999999999999999999999999
Q ss_pred EEEEeccCCCChhH-HH-HHHHHhh--cCCCEEEEEeCCCCCCCChhhH-------HhhhhhccchhhhcCCcceEEEEe
Q 008003 265 VLVVAADDGVMPQT-LE-AIAHANA--ANVPIVVAINKCDKPAADPERV-------KNQLGAEGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 265 llVvDa~~g~~~~~-~~-~i~~~~~--~~~piIvViNK~Dl~~~~~~~~-------~~~l~~~~~~~~~~~~~~~ii~iS 333 (581)
|+|+|+++...... .. .+..+.. .++|+++|+||+|+........ .....+....+....+..++++||
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 182 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS 182 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence 99999998543222 12 2222222 3789999999999964210000 000000000111111122899999
Q ss_pred ccCCCC-hhhHHHHHHHHH
Q 008003 334 AVKKTG-LDDLEVALLLQA 351 (581)
Q Consensus 334 Aktg~g-I~eLl~~L~~~~ 351 (581)
|++|.| +++++++|...+
T Consensus 183 A~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 183 AFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp TTTCHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHH
Confidence 999998 999999998755
No 100
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.83 E-value=1.3e-20 Score=176.34 Aligned_cols=158 Identities=23% Similarity=0.267 Sum_probs=112.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
.+.++|+++|++|+|||||+|+|.+..+.....+++..++. ..+.. ++ ..+.||||||++.+..++..++..+|++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 45679999999999999999999988776555555544443 44444 33 6789999999999998888899999999
Q ss_pred EEEEeccCCCChh----HHHHH-HHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 265 VLVVAADDGVMPQ----TLEAI-AHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 265 llVvDa~~g~~~~----~~~~i-~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
++|+|+++..... +...+ ......++|+++|+||+|+.....-. ........ .. ..++++++||++|.|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~---~~--~~~~~~~~Sa~~~~g 158 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVP-RSEASAFG---AS--HHVAYFEASAKLRLN 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSC-HHHHHHHH---HH--TTCEEEECBTTTTBS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC-HHHHHHHH---HH--cCCeEEEecCCCCCC
Confidence 9999998732211 11112 22334578999999999995321100 01111110 11 135899999999999
Q ss_pred hhhHHHHHHHHHH
Q 008003 340 LDDLEVALLLQAE 352 (581)
Q Consensus 340 I~eLl~~L~~~~~ 352 (581)
+++++++|.....
T Consensus 159 v~~l~~~l~~~~~ 171 (181)
T 2fn4_A 159 VDEAFEQLVRAVR 171 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.83 E-value=2e-20 Score=177.60 Aligned_cols=157 Identities=20% Similarity=0.186 Sum_probs=113.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
++.++|+++|++|+|||||+|+|.+..+.. ..+++ ......+.. ++..+.+|||||++.+...+..+++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~--~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTV--GVNLETLQY-KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSST--TCCEEEEEE-TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCC--ceEEEEEEE-CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 456899999999999999999998776543 23322 233445555 68999999999999999888889999999999
Q ss_pred EEeccCCCChhH-HHHHHHHhh----cCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQT-LEAIAHANA----ANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~-~~~i~~~~~----~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|++++...+. ...+..+.. .+.|+++|+||+|+..... ..+...+..... . ...++++++||++|.|+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSI--M--NRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC--C--SSCEEEEECCTTTCTTH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhc--c--CCceEEEEccCCCccCH
Confidence 999998643332 223333322 4789999999999975422 223222211110 0 12358999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++++++|....
T Consensus 172 ~~l~~~l~~~i 182 (189)
T 2x77_A 172 VEGMDWLVERL 182 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 102
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.83 E-value=6e-21 Score=183.71 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=113.2
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccE
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDI 263 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDi 263 (581)
+.....+|+++|++|+|||||+++|.+..+.....++++.++.. .+..+ ....+.||||||++.+..++..+++.+|+
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 33456799999999999999999999988766556666555532 34442 23589999999999999999999999999
Q ss_pred EEEEEeccCCCChhHH--HHHHHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhhh---------ccchhhhcCCcceEE
Q 008003 264 VVLVVAADDGVMPQTL--EAIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGA---------EGLELEDWGGKVQVV 330 (581)
Q Consensus 264 vllVvDa~~g~~~~~~--~~i~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~ii 330 (581)
+++|+|+++....+.. ..+..+.. .++|+++|+||+|+..... ....+.. ....+....+..+++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH--TRRELAKMKQEPVRSEEGRDMANRISAFGYL 177 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH--HHHHHHTTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc--chhhhcccccCcCCHHHHHHHHHhCCCcEEE
Confidence 9999999874222221 12222222 3789999999999975321 1111100 011111111223799
Q ss_pred EEeccCCCChhhHHHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~~~ 351 (581)
++||++|.|+++|+++|....
T Consensus 178 ~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 178 ECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999997643
No 103
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.83 E-value=9.9e-21 Score=182.17 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=107.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
.+.++|+|+|++|+|||||+|+|.+..+.....++++.++....+.. ++ ..+.||||||++.+...+..+++.+|++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 34589999999999999999999998877666666666666666666 44 7899999999999988888899999999
Q ss_pred EEEEeccCCCChhH----HHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 265 VLVVAADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 265 llVvDa~~g~~~~~----~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
|+|+|++++...+. ...+......++|+++|+||+|+.... ..+...... . ..++++++||++|
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------~--~~~~~~~~SA~~g 172 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ-------E--NELMFLETSALTG 172 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-------H--TTCEEEEECTTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHH-------H--cCCEEEEEeCCCC
Confidence 99999987432222 222222233578999999999995321 111111111 1 1358999999999
Q ss_pred CChhhHHHHHHHHH
Q 008003 338 TGLDDLEVALLLQA 351 (581)
Q Consensus 338 ~gI~eLl~~L~~~~ 351 (581)
.|+++++++|....
T Consensus 173 ~gi~~l~~~l~~~i 186 (200)
T 2o52_A 173 ENVEEAFLKCARTI 186 (200)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998754
No 104
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.83 E-value=2.3e-20 Score=172.91 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=109.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+..+|+++|++|+|||||+|+|.+..+.....+.+..+.....+... .+..+.+|||||++.+...+..++..+|++++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 34799999999999999999999887654444433333333334332 34789999999999999999999999999999
Q ss_pred EEeccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|+|++++...+.. ..+......+.|+++|+||+|+..... ......+. ... ..+++++||++|.|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYA------DSI--HAIFVETSAKNAINI 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHH------HHT--TCEEEECBTTTTBSH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHH------HHc--CCEEEEEeCCCCcCH
Confidence 9999874332222 222222234678999999999963211 11111111 111 258999999999999
Q ss_pred hhHHHHHHHH
Q 008003 341 DDLEVALLLQ 350 (581)
Q Consensus 341 ~eLl~~L~~~ 350 (581)
++|+++|...
T Consensus 157 ~~l~~~i~~~ 166 (170)
T 1z0j_A 157 NELFIEISRR 166 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999763
No 105
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.83 E-value=1.4e-20 Score=176.96 Aligned_cols=154 Identities=19% Similarity=0.253 Sum_probs=109.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
+.++|+++|++|+|||||+++|.+..+.....+.+...+ ...+.. ++ ..+.||||||++.|..++..+++.+|+++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 457999999999999999999998776655555444444 444444 44 67899999999999888889999999999
Q ss_pred EEEeccCCCChhHHHH-----HHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 266 LVVAADDGVMPQTLEA-----IAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~-----i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
+|+|+++....+.... .......++|+++|+||+|+.... .+....... .+ ..+++++||++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~ 153 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-------SW--NAAFLESSAKEN 153 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-------HT--TCEEEECCTTSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-------Hh--CCcEEEEecCCC
Confidence 9999987322222111 122223478999999999995432 111111111 11 348999999999
Q ss_pred CChhhHHHHHHHHHH
Q 008003 338 TGLDDLEVALLLQAE 352 (581)
Q Consensus 338 ~gI~eLl~~L~~~~~ 352 (581)
.|+++++++|.....
T Consensus 154 ~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 154 QTAVDVFRRIILEAE 168 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
No 106
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.83 E-value=1.3e-20 Score=183.28 Aligned_cols=159 Identities=15% Similarity=0.111 Sum_probs=111.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
...+|+++|++|+|||||+|+|.+..+.....+.++.+.....+...++ ..+.||||||++.+..++..++..+|++|
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence 4579999999999999999999987765443343333333333333223 68999999999999988888999999999
Q ss_pred EEEeccCCCChhHH----HHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 266 LVVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 266 lVvDa~~g~~~~~~----~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|+|++++...+.. ..+......++|+++|+||+|+....... ........ . ....+++++||++|.|++
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~---~--~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 90 LFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS-KKLVMEVL---K--GKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC-HHHHHHHT---T--TCCCEEEEEBTTTTBTTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC-HHHHHHHH---H--HcCCcEEEEecCCCCCHH
Confidence 99999985433332 33344444578999999999996431100 01111110 0 123589999999999999
Q ss_pred hHHHHHHHHHH
Q 008003 342 DLEVALLLQAE 352 (581)
Q Consensus 342 eLl~~L~~~~~ 352 (581)
+++++|.....
T Consensus 164 ~l~~~l~~~~~ 174 (218)
T 4djt_A 164 LPFLHLARIFT 174 (218)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 107
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.83 E-value=1.6e-20 Score=178.49 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=111.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
..++|+++|++|+|||||+|+|.+..+.....++++.++....+... .+..+.||||||++.+...+..++..+|++++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 34799999999999999999999887755444444444444444432 35689999999999999999999999999999
Q ss_pred EEeccCCCChhHH-HHHHHHhh---cCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 267 VVAADDGVMPQTL-EAIAHANA---ANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~i~~~~~---~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|+|++++...+.. ..+..+.. .+.|+++|+||+|+.... .+....... .+ .++++++||++|.|
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLAD-------DL--GFEFFEASAKENIN 171 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-------HH--TCEEEECBTTTTBS
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHH-------Hc--CCeEEEEECCCCCC
Confidence 9999874322222 22223322 478999999999995321 111111111 11 24899999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+++++++|....
T Consensus 172 i~~l~~~l~~~i 183 (189)
T 2gf9_A 172 VKQVFERLVDVI 183 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.83 E-value=3.3e-20 Score=176.58 Aligned_cols=156 Identities=19% Similarity=0.295 Sum_probs=110.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc--ccccCceeEeeeeEEEeecCCeEEEEEeCCC----------cchhhHHH
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV--AKEAGGITQHMGAFVVGMSTGASITFLDTPG----------HAAFSAMR 254 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~--~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG----------~~~~~~~~ 254 (581)
.+.++|+++|++|+|||||+|+|.+..+. ....+++|.+.....+ +..+.|||||| ++.+..++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII----NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE----TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE----CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 35789999999999999999999987632 3455666766554433 23799999999 66677777
Q ss_pred hhccccc---cEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEE
Q 008003 255 KRGAAVT---DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVV 330 (581)
Q Consensus 255 ~~~~~~a---DivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii 330 (581)
..++..+ |++++|+|++++........+..+...+.|+++|+||+|+..... ......+.+ .+. .....+++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~---~~~-~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQ---TLN-IDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHH---HHT-CCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHH---HHc-ccCCCceE
Confidence 6666665 999999999998877777777777778899999999999975321 111122211 011 11346899
Q ss_pred EEeccCCCChhhHHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~~ 350 (581)
++||++|.|+++|+++|...
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHH
Confidence 99999999999999999764
No 109
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.83 E-value=8.6e-21 Score=180.75 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=111.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+.++|+|+|++|+|||||+|+|.+..+.....++++.++....+... .+..+.||||||++.+..++..++..+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 445799999999999999999999887765444444444444444332 3578999999999999999999999999999
Q ss_pred EEEeccCCCChhHH-HHHHHHh---hcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 266 LVVAADDGVMPQTL-EAIAHAN---AANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 266 lVvDa~~g~~~~~~-~~i~~~~---~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
+|+|++++...... ..+..+. ..++|+++|+||+|+.... .+...... .. ..++++++||++|.
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~--~~~~~~~~Sa~~~~ 173 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFA-------EN--NGLLFLETSALDST 173 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-------HH--TTCEEEEECTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHH-------HH--cCCEEEEEeCCCCC
Confidence 99999874332221 2222222 2468899999999995421 11111111 11 13589999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++++++|....
T Consensus 174 gi~~l~~~l~~~i 186 (193)
T 2oil_A 174 NVELAFETVLKEI 186 (193)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997644
No 110
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.9e-20 Score=177.85 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=114.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.++ .+..+.||||||++.+..++..+++.+|++|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 45799999999999999999999887765555655555554555442 34789999999999999999999999999999
Q ss_pred EEeccCCCChhHHH-HHHHHhh----cCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 267 VVAADDGVMPQTLE-AIAHANA----ANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 267 VvDa~~g~~~~~~~-~i~~~~~----~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|+|++++....... .+..+.. .++|+++|+||+|+..... +....... .. .++++++||++|.|
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~~g 164 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-------KH--SMLFIEASAKTCDG 164 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-------HT--TCEEEECCTTTCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-------Hc--CCEEEEecCCCCCC
Confidence 99998743322222 2233332 4688999999999954321 11111111 11 25799999999999
Q ss_pred hhhHHHHHHHHHH
Q 008003 340 LDDLEVALLLQAE 352 (581)
Q Consensus 340 I~eLl~~L~~~~~ 352 (581)
+++++++|.....
T Consensus 165 i~~l~~~l~~~~~ 177 (195)
T 1x3s_A 165 VQCAFEELVEKII 177 (195)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987553
No 111
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=3.6e-20 Score=175.73 Aligned_cols=157 Identities=20% Similarity=0.290 Sum_probs=114.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCC----------cchhhHHHh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPG----------HAAFSAMRK 255 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG----------~~~~~~~~~ 255 (581)
...++|+++|++|+|||||+|+|.+... .....+++|.+...... +..+.+||||| ++.+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV----NSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE----TTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE----CCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 4568999999999999999999998763 33455666666543332 35789999999 555666665
Q ss_pred hcccc---ccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEE
Q 008003 256 RGAAV---TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVE 331 (581)
Q Consensus 256 ~~~~~---aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~ 331 (581)
.+++. +|++++|+|++++........+..+...++|+++|+||+|+.+... ......+.. .....+..++++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 172 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRK----VFSKYGEYTIIP 172 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHH----HHHSSCCSCEEE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHH----HHhhcCCCceEE
Confidence 55544 5999999999988777777777777778999999999999974321 111111111 111113468999
Q ss_pred EeccCCCChhhHHHHHHHHH
Q 008003 332 VSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 332 iSAktg~gI~eLl~~L~~~~ 351 (581)
+||++|.|+++|+++|....
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHh
Confidence 99999999999999998643
No 112
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=178.70 Aligned_cols=157 Identities=22% Similarity=0.235 Sum_probs=111.3
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
..+.++|+|+|++|+|||||+++|.+..+.....+++.... ...+.+++ ...+.||||||++.+..++..++..+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 34568999999999999999999998876554444443333 34444422 35899999999999999999999999999
Q ss_pred EEEEeccCCCChhHH----HHHHH-HhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccC
Q 008003 265 VLVVAADDGVMPQTL----EAIAH-ANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 265 llVvDa~~g~~~~~~----~~i~~-~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
++|+|+++....... ..+.. ....++|+++|+||+|+.... .+....... .+ .++++++||++
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~ 160 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-------QW--NVNYVETSAKT 160 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-------HH--TCEEEEECTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-------Hh--CCeEEEEeCCC
Confidence 999999874322221 11111 112478999999999996421 112211111 11 24799999999
Q ss_pred CCChhhHHHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQAE 352 (581)
Q Consensus 337 g~gI~eLl~~L~~~~~ 352 (581)
|.|+++++++|.....
T Consensus 161 g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 161 RANVDKVFFDLMREIR 176 (206)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987553
No 113
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.3e-20 Score=178.10 Aligned_cols=155 Identities=20% Similarity=0.297 Sum_probs=109.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
...++|+++|++|+|||||+|+|.+..+.....+++..... ..+..+ ....+.||||||++.+..++..++..+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 34579999999999999999999987765444443333222 222231 3468999999999999999999999999999
Q ss_pred EEEeccCCCC----hhHHHHHHHHhh--cCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 266 LVVAADDGVM----PQTLEAIAHANA--ANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 266 lVvDa~~g~~----~~~~~~i~~~~~--~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
+|+|+++... ..+...+..... .++|+++|+||+|+..... +...... ..+ .++++++||++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~~ 155 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA-------QEW--KCAFMETSAKMN 155 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH-------HHH--TCEEEECBTTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH-------HHh--CCeEEEEecCCC
Confidence 9999987322 122222333221 3689999999999965321 1111111 111 247999999999
Q ss_pred CChhhHHHHHHHHH
Q 008003 338 TGLDDLEVALLLQA 351 (581)
Q Consensus 338 ~gI~eLl~~L~~~~ 351 (581)
.|+++|+++|....
T Consensus 156 ~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 156 YNVKELFQELLTLE 169 (199)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998754
No 114
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.83 E-value=1.2e-20 Score=182.37 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=110.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+.++|+++|++|+|||||+++|.+..+.....+ ++.+.....+..+ ....+.||||||++.|...+..+++.+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCC-CSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCC-eecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4568999999999999999999998777654444 3444444455442 2355669999999999999999999999999
Q ss_pred EEEeccCCCChhHHH--HHHHHhh--cCCCEEEEEeCCCCCCCChhh-HHhhh------hhccchhhhcCCcceEEEEec
Q 008003 266 LVVAADDGVMPQTLE--AIAHANA--ANVPIVVAINKCDKPAADPER-VKNQL------GAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 266 lVvDa~~g~~~~~~~--~i~~~~~--~~~piIvViNK~Dl~~~~~~~-~~~~l------~~~~~~~~~~~~~~~ii~iSA 334 (581)
+|+|++++...+... .+..+.. .++|+++|+||+|+....... ..... ......+....+..+++++||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 999999744333221 2223332 378999999999996432110 00000 000111111223347999999
Q ss_pred cCCCChhhHHHHHHH
Q 008003 335 VKKTGLDDLEVALLL 349 (581)
Q Consensus 335 ktg~gI~eLl~~L~~ 349 (581)
++|.|+++++++|..
T Consensus 187 ~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 187 LTQRGLKTVFDEAIR 201 (204)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999999875
No 115
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.83 E-value=1.8e-20 Score=182.10 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=113.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-----------CeEEEEEeCCCcchhhHHHhh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-----------GASITFLDTPGHAAFSAMRKR 256 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-----------g~~i~liDTpG~~~~~~~~~~ 256 (581)
+.++|+|+|++|+|||||+++|.+..+.....++++.++....+.+++ ...+.||||||++.|...+..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~ 103 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA 103 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHH
Confidence 457999999999999999999998877655556666666555555432 478999999999999999999
Q ss_pred ccccccEEEEEEeccCCCChhHHHHH-HHHhh----cCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcce
Q 008003 257 GAAVTDIVVLVVAADDGVMPQTLEAI-AHANA----ANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQ 328 (581)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~~~~~~i-~~~~~----~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ 328 (581)
+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.... .+....... .+ .++
T Consensus 104 ~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-------~~--~~~ 174 (217)
T 2f7s_A 104 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-------KY--GIP 174 (217)
T ss_dssp HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-------HT--TCC
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH-------HC--CCc
Confidence 99999999999999874332222222 22221 468899999999995321 111111111 11 247
Q ss_pred EEEEeccCCCChhhHHHHHHHHH
Q 008003 329 VVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 329 ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
++++||++|.|+++++++|....
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998654
No 116
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.9e-20 Score=178.67 Aligned_cols=154 Identities=20% Similarity=0.180 Sum_probs=109.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccc--cCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKE--AGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~--~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
.+.++|+++|++|+|||||+|+|.+..+.... ..|++.......+.. .+..+.||||||++.+...+..++..+|++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 34579999999999999999999988764333 334444333333322 457899999999999999999999999999
Q ss_pred EEEEeccCCCChhHHH-HHHHHh---hcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 265 VLVVAADDGVMPQTLE-AIAHAN---AANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 265 llVvDa~~g~~~~~~~-~i~~~~---~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
++|+|+++....+... .+..+. ..++|+++|+||+|+.... .+....... .+ .++++++||++|
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-------~~--~~~~~~~Sa~~~ 170 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAE-------SI--GAIVVETSAKNA 170 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-------TT--TCEEEECBTTTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH-------Hc--CCEEEEEeCCCC
Confidence 9999998754322222 222222 2478999999999995311 112211111 11 258999999999
Q ss_pred CChhhHHHHHHHH
Q 008003 338 TGLDDLEVALLLQ 350 (581)
Q Consensus 338 ~gI~eLl~~L~~~ 350 (581)
.|+++|+++|...
T Consensus 171 ~gi~~l~~~l~~~ 183 (192)
T 2fg5_A 171 INIEELFQGISRQ 183 (192)
T ss_dssp BSHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHH
Confidence 9999999999763
No 117
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2e-20 Score=173.41 Aligned_cols=155 Identities=20% Similarity=0.263 Sum_probs=105.6
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
..+|+++|++|+|||||+|+|.+..+.....+++...... .+... ....+.||||||++.+..++..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE-EEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4789999999999999999999877654444433332222 22221 346799999999999999999999999999999
Q ss_pred EeccCCCChhH-HHHHHHHhh-----cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 268 VAADDGVMPQT-LEAIAHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 268 vDa~~g~~~~~-~~~i~~~~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|+++....+. ...+..+.. .++|+++|+||+|+....... ....... ...+ .++++++||++|.|++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQ-SSEAEAL---ARTW--KCAFMETSAKLNHNVK 155 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSC-HHHHHHH---HHHH--TCEEEECBTTTTBSHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccC-HHHHHHH---HHHh--CCeEEEecCCCCcCHH
Confidence 99987322111 122222221 378999999999985321100 0000110 0111 2489999999999999
Q ss_pred hHHHHHHHH
Q 008003 342 DLEVALLLQ 350 (581)
Q Consensus 342 eLl~~L~~~ 350 (581)
+++++|...
T Consensus 156 ~l~~~l~~~ 164 (172)
T 2erx_A 156 ELFQELLNL 164 (172)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999763
No 118
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.83 E-value=3.1e-20 Score=172.30 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=96.5
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhH-HHhhccccccEEEEE
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSA-MRKRGAAVTDIVVLV 267 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~-~~~~~~~~aDivllV 267 (581)
++|+++|++|+|||||+++|.+........+.++.+.....+..++ ...+.+|||||++.+.. ++..+++.+|++++|
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 82 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIV 82 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEE
Confidence 5899999999999999999987665544445556666666666532 36788999999998876 566678899999999
Q ss_pred EeccCCCChhHH-HHHHHHhh----cCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 268 VAADDGVMPQTL-EAIAHANA----ANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 268 vDa~~g~~~~~~-~~i~~~~~----~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
+|+++....+.. ..+..+.. .++|+++|+||+|+.+.. .+...... ..+ ..+++++||++|.|
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~~~~ 153 (169)
T 3q85_A 83 FSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-------GTL--SCKHIETSAALHHN 153 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-------HHT--TCEEEECBTTTTBS
T ss_pred EECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-------HHc--CCcEEEecCccCCC
Confidence 999873222111 12222221 378999999999996321 11111111 111 34899999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+++++++|....
T Consensus 154 v~~l~~~l~~~i 165 (169)
T 3q85_A 154 TRELFEGAVRQI 165 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 119
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.3e-20 Score=177.95 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=110.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+..+|+++|++|+|||||+++|.+..+.....+++. +.....+..+ ....+.||||||++.|..++..+++.+|++++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc-ceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 347999999999999999999998876554444333 3333344442 23789999999999999999999999999999
Q ss_pred EEeccCCCChhHH--HHHHHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhh---------hccchhhhcCCcceEEEEe
Q 008003 267 VVAADDGVMPQTL--EAIAHANA--ANVPIVVAINKCDKPAADPERVKNQLG---------AEGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 267 VvDa~~g~~~~~~--~~i~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~---------~~~~~~~~~~~~~~ii~iS 333 (581)
|+|+++....+.. ..+..+.. .++|+++|+||+|+..... ....+. +....+....+..+++++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK--TLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHH--HHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccccc--chhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 9999874322222 12233333 2789999999999965321 000000 0000111111223799999
Q ss_pred ccCCCChhhHHHHHHHHH
Q 008003 334 AVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 334 Aktg~gI~eLl~~L~~~~ 351 (581)
|++|.|+++++++|....
T Consensus 174 a~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999997643
No 120
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.83 E-value=5.7e-21 Score=179.45 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=100.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+..+|+++|++|+|||||+++|.+..+.....+++...+ ...+... ....+.||||||++.|...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4568999999999999999999998776544444333222 2222221 3456779999999999999999999999999
Q ss_pred EEEeccCCCChhHHH--HHHHHhh--cCCCEEEEEeCCCCCCCChhhH-----HhhhhhccchhhhcCCcceEEEEeccC
Q 008003 266 LVVAADDGVMPQTLE--AIAHANA--ANVPIVVAINKCDKPAADPERV-----KNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 266 lVvDa~~g~~~~~~~--~i~~~~~--~~~piIvViNK~Dl~~~~~~~~-----~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
+|+|+++....+... .+..+.. .++|+++|+||+|+........ ..........+....+..+++++||++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 999998743322221 2222222 3789999999999964321100 000000000111111224899999999
Q ss_pred CCChhhHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQ 350 (581)
Q Consensus 337 g~gI~eLl~~L~~~ 350 (581)
|.|+++++++|...
T Consensus 165 ~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 165 QENVKGVFDAAIRV 178 (182)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999764
No 121
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=172.91 Aligned_cols=156 Identities=19% Similarity=0.113 Sum_probs=98.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccc-cccCceeEeeeeEEEeec-CCeEEEEEeCCCcch--hhHHHhhccccccE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMS-TGASITFLDTPGHAA--FSAMRKRGAAVTDI 263 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~-~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~--~~~~~~~~~~~aDi 263 (581)
+.++|+++|++|+|||||+++|.+..+.. ....|++... ..+.++ ....+.+|||||++. +..+...+++.+|+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYE--RTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEE--EEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeE--EEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 35799999999999999999999876543 2334444333 333442 235789999999987 56666778899999
Q ss_pred EEEEEeccCCCChhHH-HHHHHHhh----cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 264 VVLVVAADDGVMPQTL-EAIAHANA----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 264 vllVvDa~~g~~~~~~-~~i~~~~~----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
+++|+|+++....+.. ..+..+.. .++|+++|+||+|+.+...-.. ...... ...+ ..+++++||++|.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~-~~~~~~---~~~~--~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV-EEGRAC---AVVF--DCKFIETSATLQH 154 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCH-HHHHHH---HHHH--TSEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCH-HHHHHH---HHHc--CCeEEEEecCCCC
Confidence 9999999874322222 22222332 3789999999999964321000 011110 0111 2489999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++++++|....
T Consensus 155 gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 155 NVAELFEGVVRQL 167 (175)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 122
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.83 E-value=2.9e-20 Score=171.90 Aligned_cols=155 Identities=21% Similarity=0.135 Sum_probs=88.8
Q ss_pred CCEEEEEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
.++|+++|++|+|||||+|+|.+.... ....++++.+. ...+.. ....+.+|||||++.+..++..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR-SIVVDG-EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE-EEEETT-EEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-EEEECC-EEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 478999999999999999999876553 33445555532 222221 446789999999999999999999999999999
Q ss_pred EeccCCCChhHH-HHHHHHh----hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhh
Q 008003 268 VAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (581)
Q Consensus 268 vDa~~g~~~~~~-~~i~~~~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~e 342 (581)
+|+++....+.. ..+..+. ..++|+++|+||+|+.+...... ...... ... ...+++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~---~~~--~~~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV-DEGRAC---AVV--FDCKFIETSAALHHNVQA 153 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH-HHHHHH---HHH--TTCEEEECBGGGTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCH-HHHHHH---HHH--hCCcEEEeccCCCCCHHH
Confidence 999874322222 2222222 24789999999999964321110 000000 011 125899999999999999
Q ss_pred HHHHHHHHH
Q 008003 343 LEVALLLQA 351 (581)
Q Consensus 343 Ll~~L~~~~ 351 (581)
++++|....
T Consensus 154 l~~~l~~~~ 162 (166)
T 3q72_A 154 LFEGVVRQI 162 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 123
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.83 E-value=2.3e-20 Score=175.64 Aligned_cols=155 Identities=23% Similarity=0.253 Sum_probs=109.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+.++|+++|++|+|||||+|+|.+..+.....+.+.... ...+... ....+.||||||++.+..++..++..+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 3458999999999999999999998876554444443333 3334442 2358999999999999999999999999999
Q ss_pred EEEeccCCCChhHH----HHHHH-HhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 266 LVVAADDGVMPQTL----EAIAH-ANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 266 lVvDa~~g~~~~~~----~~i~~-~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
+|+|+++....+.. ..+.. ....++|+++|+||+|+.... .+...... ..+ .++++++||++|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~~ 165 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-------EQW--NVNYVETSAKTR 165 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-------HHT--TCEEEECCTTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-------HHc--CCeEEEeCCCCC
Confidence 99999874322121 11211 222478999999999995421 11111111 111 248999999999
Q ss_pred CChhhHHHHHHHHH
Q 008003 338 TGLDDLEVALLLQA 351 (581)
Q Consensus 338 ~gI~eLl~~L~~~~ 351 (581)
.|+++++++|....
T Consensus 166 ~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 166 ANVDKVFFDLMREI 179 (187)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998754
No 124
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.83 E-value=3.8e-20 Score=169.97 Aligned_cols=154 Identities=23% Similarity=0.276 Sum_probs=107.6
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivllV 267 (581)
..+|+++|++|+|||||+|+|.+..+.....+.+.... ...+... ....+.+|||||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 46899999999999999999998776554444333332 3334442 235689999999999999999999999999999
Q ss_pred EeccCCCChhHH-HHHHHHh----hcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 268 VAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 268 vDa~~g~~~~~~-~~i~~~~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|+++....+.. ..+..+. ..++|+++|+||+|+..... ......+. ... .++++++||++|.|++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~gi~ 153 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA------RSY--GIPYIETSAKTRQGVE 153 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH------HHH--TCCEEEECTTTCTTHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH------HHc--CCeEEEecCCCCCCHH
Confidence 999874322211 1222222 23789999999999965221 11111111 111 2479999999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
+++++|....
T Consensus 154 ~l~~~l~~~~ 163 (166)
T 2ce2_X 154 DAFYTLVREI 163 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998653
No 125
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=1.1e-20 Score=178.93 Aligned_cols=155 Identities=20% Similarity=0.284 Sum_probs=115.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh------HHHhhccc-
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS------AMRKRGAA- 259 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~------~~~~~~~~- 259 (581)
.+.++|+++|++|+|||||+++|.+..+.....+++|.+.....+.. ++..+.+|||||++.+. .++..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe-CCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 45689999999999999999999998777777888888887777777 78999999999988774 33444443
Q ss_pred -cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 260 -VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 260 -~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
.+|++++|+|+++ .......+..+...+.|+++|+||+|+..... +....... ...+ ..+++++||++|.
T Consensus 84 ~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~---~~~~--~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 84 EKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLG--IEIDVDKL---EKIL--GVKVVPLSAAKKM 154 (188)
T ss_dssp HCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTT--CCCCHHHH---HHHH--TSCEEECBGGGTB
T ss_pred cCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcccccc--chHHHHHH---HHHh--CCCeEEEEecCCC
Confidence 4999999999985 23334445555667899999999999842110 00001000 0111 2479999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++++++|....
T Consensus 155 ~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 155 GIEELKKAISIAV 167 (188)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998755
No 126
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=178.74 Aligned_cols=166 Identities=18% Similarity=0.155 Sum_probs=104.7
Q ss_pred CCCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccc
Q 008003 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVT 261 (581)
Q Consensus 184 ~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~a 261 (581)
....+.++|+++|++|+|||||+++|.+..+.....+++ .+.....+.. ++ ..+.||||||++.|..++..++..+
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCS-SEEEEEEEEE-TTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc-cceeEEEEEE-CCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 344567899999999999999999999887654444433 3333444544 44 5677999999999999888899999
Q ss_pred cEEEEEEeccCCCChhHHH--HHHHHhh--cCCCEEEEEeCCCCCCCChhh--H-----HhhhhhccchhhhcCCcceEE
Q 008003 262 DIVVLVVAADDGVMPQTLE--AIAHANA--ANVPIVVAINKCDKPAADPER--V-----KNQLGAEGLELEDWGGKVQVV 330 (581)
Q Consensus 262 DivllVvDa~~g~~~~~~~--~i~~~~~--~~~piIvViNK~Dl~~~~~~~--~-----~~~l~~~~~~~~~~~~~~~ii 330 (581)
|++++|+|+++....+... .+..+.. .++|+++|+||+|+....... . .....+....+....+..+++
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 9999999998743322221 2222222 378999999999996421100 0 000000000111111223899
Q ss_pred EEeccCCCChhhHHHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~~~ 351 (581)
++||++|.|+++++++|....
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 127
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=9.6e-21 Score=180.45 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=110.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
..++|+|+|++|+|||||+|+|.+..+.....++++.+.....+... .+..+.||||||++.+..++..+++.+|++++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 45799999999999999999999877654433333333333333332 56889999999999999999999999999999
Q ss_pred EEeccCCCChh----HHHHHHHHhhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 267 VVAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 267 VvDa~~g~~~~----~~~~i~~~~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|+|+++....+ +...+......++|+++|+||+|+.... .+....... .+ .++++++||++|.|
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~~g 172 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAE-------QL--GFDFFEASAKENIS 172 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-------HH--TCEEEECBTTTTBS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH-------Hc--CCeEEEEECCCCCC
Confidence 99998732222 2222222222578999999999995321 111111111 11 24899999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+++++++|....
T Consensus 173 i~~l~~~l~~~i 184 (191)
T 3dz8_A 173 VRQAFERLVDAI 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 128
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.82 E-value=2.5e-20 Score=177.09 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=111.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhh-HHHhhccccccEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFS-AMRKRGAAVTDIV 264 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~-~~~~~~~~~aDiv 264 (581)
.+.++|+++|++|+|||||+|+|.+..+.....++++.++....+.+++ ...+.||||||++.+. .++..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 4568999999999999999999998877666666666666666666532 3689999999999998 7888889999999
Q ss_pred EEEEeccCCCCh----hHHHHHHH-HhhcCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 265 VLVVAADDGVMP----QTLEAIAH-ANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 265 llVvDa~~g~~~----~~~~~i~~-~~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
|+|+|+++.... .+...+.. +...++|+++|+||+|+..... ......+. .. ..++++++||++|
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~--~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA------DT--HSMPLFETSAKNP 169 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH------HH--TTCCEEECCSSSG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH------HH--cCCEEEEEeCCcC
Confidence 999999874222 22222222 2245789999999999953211 11111111 11 1247999999999
Q ss_pred ---CChhhHHHHHHHH
Q 008003 338 ---TGLDDLEVALLLQ 350 (581)
Q Consensus 338 ---~gI~eLl~~L~~~ 350 (581)
.|+++++++|...
T Consensus 170 ~~~~~i~~l~~~l~~~ 185 (189)
T 1z06_A 170 NDNDHVEAIFMTLAHK 185 (189)
T ss_dssp GGGSCHHHHHHHHC--
T ss_pred CcccCHHHHHHHHHHH
Confidence 9999999998653
No 129
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=181.58 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=110.8
Q ss_pred CCCCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccc
Q 008003 183 TEILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVT 261 (581)
Q Consensus 183 ~~~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~a 261 (581)
+....+.++|+++|++|+|||||+|+|.+..+.....++++..+ ...+... .+..+.||||||++.+..++..+++.+
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 33445678999999999999999999999887765555544444 3333332 457899999999999999999999999
Q ss_pred cEEEEEEeccCCCChhHHH-HHHHHh----hcCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEEEEe
Q 008003 262 DIVVLVVAADDGVMPQTLE-AIAHAN----AANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 262 DivllVvDa~~g~~~~~~~-~i~~~~----~~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii~iS 333 (581)
|++++|+|+++....+... .+..+. ..++|+++|+||+|+..... ....... ..+ ..+++++|
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-------~~~--~~~~~~~S 167 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA-------ESW--GATFMESS 167 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHH-------HHH--TCEEEECC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHH-------HHh--CCeEEEEe
Confidence 9999999998743222222 222222 23789999999999963211 1111111 111 24899999
Q ss_pred ccCCCChhhHHHHHHHHHH
Q 008003 334 AVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 334 Aktg~gI~eLl~~L~~~~~ 352 (581)
|++|.|+++++++|.....
T Consensus 168 a~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 168 ARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987654
No 130
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.82 E-value=1.9e-20 Score=179.76 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=80.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc--cccccccCceeEeeeeEEEeecC---CeEEEEEeCCCcchhhHHHhhcccccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT--SLVAKEAGGITQHMGAFVVGMST---GASITFLDTPGHAAFSAMRKRGAAVTD 262 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~--~~~~~~~~g~T~d~~~~~~~~~~---g~~i~liDTpG~~~~~~~~~~~~~~aD 262 (581)
..++|+++|++|+|||||+++|.+. .+.....+++..++....+.+++ ...+.||||||++.+..++..+++.+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 4579999999999999999999988 55544455555567667777633 568999999999999999999999999
Q ss_pred EEEEEEeccCCCChhHH-HHHHHHhh------cCCCEEEEEeCCCCCC-CC---hhhHHhhhhhccchhhhcCCcceEEE
Q 008003 263 IVVLVVAADDGVMPQTL-EAIAHANA------ANVPIVVAINKCDKPA-AD---PERVKNQLGAEGLELEDWGGKVQVVE 331 (581)
Q Consensus 263 ivllVvDa~~g~~~~~~-~~i~~~~~------~~~piIvViNK~Dl~~-~~---~~~~~~~l~~~~~~~~~~~~~~~ii~ 331 (581)
++|+|+|++++...+.. ..+..+.. .++|+++|+||+|+.. .. .+....... .+ .+++++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-------~~--~~~~~~ 169 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-------TN--TLDFFD 169 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-------HT--TCEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-------Hc--CCEEEE
Confidence 99999999874332222 22222222 4789999999999964 21 112211111 11 258999
Q ss_pred EeccC-CCChhhHHHHHHHHH
Q 008003 332 VSAVK-KTGLDDLEVALLLQA 351 (581)
Q Consensus 332 iSAkt-g~gI~eLl~~L~~~~ 351 (581)
+||++ |.|+++++++|....
T Consensus 170 ~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 170 VSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp CCC-------CHHHHHHHHHH
T ss_pred eccCCCCcCHHHHHHHHHHHH
Confidence 99999 999999999998644
No 131
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.82 E-value=1.2e-20 Score=190.04 Aligned_cols=155 Identities=23% Similarity=0.267 Sum_probs=117.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH------HHhhcc--c
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA------MRKRGA--A 259 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~------~~~~~~--~ 259 (581)
+.++|+++|++|+|||||+|+|.+..+..+..+|+|.+.....+.. ++..+.||||||+..+.. +...++ .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 4578999999999999999999998887888899999988888877 789999999999877653 223344 5
Q ss_pred cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
.+|++++|+|+++. ......+..+...++|+++|+||+|+..... ........ ...+ .++++++||++|.|
T Consensus 83 ~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~--i~~~~~~l---~~~l--g~~vi~~SA~~g~g 153 (258)
T 3a1s_A 83 DADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTG--MKIDRYEL---QKHL--GIPVVFTSSVTGEG 153 (258)
T ss_dssp CCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTT--CCBCHHHH---HHHH--CSCEEECCTTTCTT
T ss_pred CCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccc--hHHHHHHH---HHHc--CCCEEEEEeeCCcC
Confidence 89999999999873 3344555666677999999999999842110 00000000 0111 25899999999999
Q ss_pred hhhHHHHHHHHHH
Q 008003 340 LDDLEVALLLQAE 352 (581)
Q Consensus 340 I~eLl~~L~~~~~ 352 (581)
+++|+++|.....
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987543
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=1.5e-20 Score=203.30 Aligned_cols=152 Identities=19% Similarity=0.298 Sum_probs=108.3
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcc--------hhhHHHhhccc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA--------AFSAMRKRGAA 259 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~--------~~~~~~~~~~~ 259 (581)
.++|+|+|+||||||||+|+|.+.+. .+...+|+|+|.....+.+ ++..+.+|||||++ .+...+..++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTT-CSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEE-CCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 47899999999999999999998765 3677899999998888877 78899999999985 56666778889
Q ss_pred cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
.||++|+|+|+.++....+.+....+...++|+++|+||+|+..... ...+ +...+ ..+++++||++|.|
T Consensus 82 ~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~-----~~~~----~~~lg-~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA-----NIYD----FYSLG-FGEPYPISGTHGLG 151 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC----------CCCS----SGGGS-SCCCEECBTTTTBT
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh-----hHHH----HHHcC-CCCeEEEeCcCCCC
Confidence 99999999999999888877777777778999999999999964211 0100 11111 12689999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+++|+++|....
T Consensus 152 v~~L~~~i~~~l 163 (436)
T 2hjg_A 152 LGDLLDAVAEHF 163 (436)
T ss_dssp HHHHHHHHHHTG
T ss_pred hHHHHHHHHHhc
Confidence 999999997643
No 133
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.82 E-value=3.9e-21 Score=195.15 Aligned_cols=151 Identities=19% Similarity=0.291 Sum_probs=116.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH----------HHhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA----------MRKRG 257 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~----------~~~~~ 257 (581)
+.++|+++|++|+|||||+|+|.+....++..+|+|.+.....+.+ .+..+.||||||+.++.. ....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 4579999999999999999999999888888999999988888887 678999999999877652 12222
Q ss_pred --cccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEec
Q 008003 258 --AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 258 --~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSA 334 (581)
...+|++++|+|+++ ..........+...++|+++|+||+|+..... ......+. ..+ .++++++||
T Consensus 81 ~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~------~~l--g~~~i~~SA 150 (274)
T 3i8s_A 81 ILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALS------ARL--GCPVIPLVS 150 (274)
T ss_dssp HHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHH------HHH--TSCEEECCC
T ss_pred HhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHH------Hhc--CCCEEEEEc
Confidence 268999999999987 33445555666677999999999999842110 00011111 111 258999999
Q ss_pred cCCCChhhHHHHHHH
Q 008003 335 VKKTGLDDLEVALLL 349 (581)
Q Consensus 335 ktg~gI~eLl~~L~~ 349 (581)
++|.|+++|+++|..
T Consensus 151 ~~g~gi~el~~~i~~ 165 (274)
T 3i8s_A 151 TRGRGIEALKLAIDR 165 (274)
T ss_dssp GGGHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999999865
No 134
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.8e-20 Score=183.46 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=107.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
..++|+|+|++|+|||||+++|.+..+.....++++.++....+.+ ++ ..+.||||||++.|..++..+++.+|++|
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 4579999999999999999999998876656666666666666666 44 68999999999999999999999999999
Q ss_pred EEEeccCCCChhHHH-HHHHHh---hcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 266 LVVAADDGVMPQTLE-AIAHAN---AANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 266 lVvDa~~g~~~~~~~-~i~~~~---~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
+|+|++++...+... .+..+. ..++|+++|+||+|+.... .+...... .. ..++++++||++|.
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-------~~--~~~~~~~~Sa~~~~ 161 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFA-------QE--NQLLFTETSALNSE 161 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHH-------HH--TTCEEEECCCC-CC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHH-------HH--cCCEEEEEeCCCCC
Confidence 999998743322222 122222 2478999999999995321 11111111 11 13589999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
|+++++++|....
T Consensus 162 gi~~l~~~l~~~i 174 (223)
T 3cpj_B 162 NVDKAFEELINTI 174 (223)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 135
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.82 E-value=1.4e-20 Score=182.15 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=108.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+.++|+++|++|+|||||+++|.+..+.....+++. +.....+.++ ....+.||||||++.|..++..+++.+|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSC-CCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccc-eeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3457999999999999999999998876544444333 3333344442 2368999999999999999999999999999
Q ss_pred EEEeccCCCChhHH--HHHHHHhh--cCCCEEEEEeCCCCCCCChhh-------HHhhhhhccchhhhcCCcceEEEEec
Q 008003 266 LVVAADDGVMPQTL--EAIAHANA--ANVPIVVAINKCDKPAADPER-------VKNQLGAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 266 lVvDa~~g~~~~~~--~~i~~~~~--~~~piIvViNK~Dl~~~~~~~-------~~~~l~~~~~~~~~~~~~~~ii~iSA 334 (581)
+|+|+++....+.. ..+..+.. .++|+++|+||+|+....... ........ ...+ +..+++++||
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~---~~~~-~~~~~~~~Sa 161 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL---RKQI-GAAAYIECSS 161 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH---HHHH-TCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH---HHHc-CCceEEEccC
Confidence 99999874322221 12222222 378999999999996431100 00111110 0111 2248999999
Q ss_pred cCCCChhhHHHHHHHHH
Q 008003 335 VKKTGLDDLEVALLLQA 351 (581)
Q Consensus 335 ktg~gI~eLl~~L~~~~ 351 (581)
++|.|+++++++|....
T Consensus 162 ~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998755
No 136
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=191.02 Aligned_cols=157 Identities=20% Similarity=0.195 Sum_probs=110.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.+.++|+|+|++|+|||||+++|.+..+... .+ |.+.....+.. .+..+.||||||++.|..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~p--T~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EE--ETTEEEEEEEE-TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-cc--ccceEEEEEec-CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 3556999999999999999999998876533 23 44444555665 78999999999999999999999999999999
Q ss_pred EEeccCCCChhHH-HHHHH-Hh---hcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQTL-EAIAH-AN---AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~i~~-~~---~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|||+++....... ..+.. +. ..++|+++|+||+|+.+.. ...+...+..... ....++++++||++|.||
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~vSAk~g~gi 314 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RHRNWYIQATCATSGDGL 314 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTC----CSSCEEEEECBTTTTBTH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhh----hcCCCEEEEEECCCCcCH
Confidence 9999875443322 22222 22 2378999999999997542 2333332221111 113468999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++|+++|....
T Consensus 315 ~el~~~l~~~l 325 (329)
T 3o47_A 315 YEGLDWLSNQL 325 (329)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 137
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.82 E-value=7.3e-20 Score=173.65 Aligned_cols=155 Identities=23% Similarity=0.307 Sum_probs=99.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
+.++|+++|++|+|||||+++|.+..+.....+.++.. ....+... ....+.||||||++.+..++..++..+|++++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 45799999999999999999999877655444433333 33344442 23569999999999999999999999999999
Q ss_pred EEeccCCCChhHHH----HHHHHh-hcCCCEEEEEeCCCCCCCC--hhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 267 VVAADDGVMPQTLE----AIAHAN-AANVPIVVAINKCDKPAAD--PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 267 VvDa~~g~~~~~~~----~i~~~~-~~~~piIvViNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|+|+++....+... .+.... ..++|+++|+||+|+.... .+........ + .++++++||++|.|
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~--~~~~~~~Sa~~~~g 169 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-------Y--GIPFIETSAKTRQG 169 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-------H--TCCEEECCTTTCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-------c--CCeEEEEeCCCCCC
Confidence 99998743322222 222211 2478999999999996521 1222211111 1 24799999999999
Q ss_pred hhhHHHHHHHHHH
Q 008003 340 LDDLEVALLLQAE 352 (581)
Q Consensus 340 I~eLl~~L~~~~~ 352 (581)
+++++++|.....
T Consensus 170 i~~l~~~l~~~~~ 182 (190)
T 3con_A 170 VEDAFYTLVREIR 182 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987553
No 138
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.8e-20 Score=181.24 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=107.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
...++|+++|++|+|||||+++|.+..+.....++++.++. ..+..+ ....+.||||||++.+...+..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 34579999999999999999999988776554454444432 224442 2368999999999999999999999999999
Q ss_pred EEEeccCCCChhHH--HHHHHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhhh---------ccchhhhcCCcceEEEE
Q 008003 266 LVVAADDGVMPQTL--EAIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGA---------EGLELEDWGGKVQVVEV 332 (581)
Q Consensus 266 lVvDa~~g~~~~~~--~~i~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~ii~i 332 (581)
+|+|+++....+.. ..+..+.. .++|+++|+||+|+.... .....+.. ....+....+..+++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE--HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc--cchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 99999874222221 12222222 378999999999996431 11111110 00011111122379999
Q ss_pred eccCCCChhhHHHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~~~ 351 (581)
||++|.|+++|+++|....
T Consensus 180 SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAA 198 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 139
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=181.61 Aligned_cols=162 Identities=19% Similarity=0.187 Sum_probs=92.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+..+|+++|++|+|||||+++|.+..+.....+++.... ...+..+ ....+.||||||++.|..++..++..+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3568999999999999999999998877554445443333 3334442 2357999999999999999999999999999
Q ss_pred EEEeccCCCChhHHH--HHHHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhh---------hccchhhhcCCcceEEEE
Q 008003 266 LVVAADDGVMPQTLE--AIAHANA--ANVPIVVAINKCDKPAADPERVKNQLG---------AEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 266 lVvDa~~g~~~~~~~--~i~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~---------~~~~~~~~~~~~~~ii~i 332 (581)
+|+|++++...+... .+..+.. .++|+++|+||+|+..... ....+. +....+....+..+++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS--LVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH--HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch--hhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 999998743222211 1222222 4789999999999964321 111100 001111111122489999
Q ss_pred eccCCCChhhHHHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~~~ 351 (581)
||++|.|+++++++|....
T Consensus 189 SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 140
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=176.12 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=109.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC-CeEEEEEeCCCcchhhH-HHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFSA-MRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~-g~~i~liDTpG~~~~~~-~~~~~~~~aDivl 265 (581)
..++|+++|.+|||||||+++|.+........++++.+.....+.+++ ...+.+|||||++.+.. ++..+++.+|++|
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i 101 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL 101 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence 457999999999999999999987654444556666666555555522 35788999999988765 6777889999999
Q ss_pred EEEeccCCCChhHH-HHHHHHhh----cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 266 LVVAADDGVMPQTL-EAIAHANA----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 266 lVvDa~~g~~~~~~-~~i~~~~~----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
+|+|+++....... ..+..+.. .++|+++|+||+|+.....-.. ...... ...+ .++++++||++|.|+
T Consensus 102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~-~~~~~~---a~~~--~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL-EEGRHL---AGTL--SCKHIETSAALHHNT 175 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCH-HHHHHH---HHHT--TCEEEEEBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCH-HHHHHH---HHHh--CCEEEEEcCCCCCCH
Confidence 99999873222111 12222221 4789999999999964321000 011111 0111 248999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++++++|....
T Consensus 176 ~~lf~~l~~~i 186 (195)
T 3cbq_A 176 RELFEGAVRQI 186 (195)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 141
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.82 E-value=2.3e-20 Score=182.20 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=112.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccc--cccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA--KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~--~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDiv 264 (581)
...++|+++|++|+|||||+|+|....+.. ....|+|.......+.. .+..+.||||||++.+..++..+++.+|++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 455899999999999999999977655432 34456666665555543 567899999999999998888999999999
Q ss_pred EEEEeccCCCChhHHHHH-HHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 265 VLVVAADDGVMPQTLEAI-AHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 265 llVvDa~~g~~~~~~~~i-~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
++|+|++++...+....| ..+.. .++|+++|+||+|+.+..... .... ..... .++++++||++|.|++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~~~---~~~~~--~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA---KSIV---FHRKK--NLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCG---GGCC---HHHHH--TCEEEECBGGGTBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccH---HHHH---HHHHc--CCEEEEEeCCCCCCHH
Confidence 999999984332222222 22221 378999999999996533211 1110 01111 3589999999999999
Q ss_pred hHHHHHHHHH
Q 008003 342 DLEVALLLQA 351 (581)
Q Consensus 342 eLl~~L~~~~ 351 (581)
+++++|....
T Consensus 164 ~l~~~l~~~l 173 (221)
T 3gj0_A 164 KPFLWLARKL 173 (221)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 142
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.81 E-value=2.9e-20 Score=176.08 Aligned_cols=164 Identities=14% Similarity=0.196 Sum_probs=109.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
....+|+++|++|+|||||+++|.+..+.....+++..+. ...+... ....+.||||||++.|..++..++..+|+++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 3457999999999999999999998877655555444433 2233332 3478999999999999999999999999999
Q ss_pred EEEeccCCCChhHH-HHH-HHHhh--cCCCEEEEEeCCCCCCCChh--hHH----hhh-hhccchhhhcCCcceEEEEec
Q 008003 266 LVVAADDGVMPQTL-EAI-AHANA--ANVPIVVAINKCDKPAADPE--RVK----NQL-GAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 266 lVvDa~~g~~~~~~-~~i-~~~~~--~~~piIvViNK~Dl~~~~~~--~~~----~~l-~~~~~~~~~~~~~~~ii~iSA 334 (581)
+|+|+++....+.. ..| ..+.. .+.|+++|+||+|+...... ... ... .+....+....+..+++++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999874322221 111 22222 47899999999999632100 000 000 000001111112358999999
Q ss_pred c-CCCChhhHHHHHHHHH
Q 008003 335 V-KKTGLDDLEVALLLQA 351 (581)
Q Consensus 335 k-tg~gI~eLl~~L~~~~ 351 (581)
+ +|.|++++++.|.+.+
T Consensus 164 ~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLAC 181 (184)
T ss_dssp TTBHHHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHH
Confidence 9 6899999999997653
No 143
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.81 E-value=8e-20 Score=184.92 Aligned_cols=153 Identities=19% Similarity=0.226 Sum_probs=118.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH------HHhhcc--c
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA------MRKRGA--A 259 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~------~~~~~~--~ 259 (581)
+.++|+++|++|+|||||+|+|.+.....+..+|+|.+.....+.+ ++..+.+|||||+..+.. ....++ .
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 4579999999999999999999998888888999999998888887 788999999999887654 333444 6
Q ss_pred cccEEEEEEeccCCCChhHHHHHHHHhhcC-CCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 260 VTDIVVLVVAADDGVMPQTLEAIAHANAAN-VPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~~~i~~~~~~~-~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
.+|++++|+|+++. ......+..+...+ +|+++|+||+|+..... ......+. ..+ .++++++||++|
T Consensus 81 ~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~------~~l--g~~~~~~Sa~~g 150 (271)
T 3k53_A 81 NADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMR------KEL--GVPVIPTNAKKG 150 (271)
T ss_dssp CCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHH------HHH--SSCEEECBGGGT
T ss_pred CCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHH------HHc--CCcEEEEEeCCC
Confidence 89999999999874 34455555666667 99999999999742100 00011111 111 258999999999
Q ss_pred CChhhHHHHHHHHH
Q 008003 338 TGLDDLEVALLLQA 351 (581)
Q Consensus 338 ~gI~eLl~~L~~~~ 351 (581)
.|+++|++.|....
T Consensus 151 ~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 151 EGVEELKRMIALMA 164 (271)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998764
No 144
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.81 E-value=6.6e-20 Score=173.35 Aligned_cols=155 Identities=19% Similarity=0.241 Sum_probs=106.1
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCC-----------cchhhHHHhhcc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPG-----------HAAFSAMRKRGA 258 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG-----------~~~~~~~~~~~~ 258 (581)
++|+++|++|+|||||+|+|.+..+.....+++|.+.....+ . .+.+||||| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~---~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW---K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE---T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec---C--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999988877777888776554433 2 799999999 566666665555
Q ss_pred cc----ccEEEEEEeccCC-----------CChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhc
Q 008003 259 AV----TDIVVLVVAADDG-----------VMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDW 323 (581)
Q Consensus 259 ~~----aDivllVvDa~~g-----------~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~ 323 (581)
.. ++++++|+|.+.. ...++.+.+..+...++|+++|+||+|+.....+.........+..+..+
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 156 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEI 156 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhcc
Confidence 44 5566666665431 11122234445556789999999999997543222222222222211111
Q ss_pred CCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 324 GGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 324 ~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
..+++++||++|.|+++++++|....
T Consensus 157 --~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 157 --DKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp --HHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --CCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 23689999999999999999998754
No 145
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.81 E-value=6.3e-20 Score=174.43 Aligned_cols=155 Identities=18% Similarity=0.195 Sum_probs=105.2
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhcccccc
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTD 262 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aD 262 (581)
...+..+|+|+|++|+|||||+++|.+..+.....+. ..++ ...+.+ ++ ..+.||||||++.|. +++.+|
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVV-DGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEE-TTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEE-CCEEEEEEEEECCCChhhh-----eecCCC
Confidence 3455689999999999999999999988776544443 2222 244455 44 567889999998877 667899
Q ss_pred EEEEEEeccCCCChhHH-HHHHHHhh----cCCCEEEEEeCCCCCCCChhhH-HhhhhhccchhhhcCCcceEEEEeccC
Q 008003 263 IVVLVVAADDGVMPQTL-EAIAHANA----ANVPIVVAINKCDKPAADPERV-KNQLGAEGLELEDWGGKVQVVEVSAVK 336 (581)
Q Consensus 263 ivllVvDa~~g~~~~~~-~~i~~~~~----~~~piIvViNK~Dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~ii~iSAkt 336 (581)
++++|||+++....+.. ..+..+.. .++|+++|+||+|+.......+ ...... +....+..+++++||++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~----~~~~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARK----LSTDLKRCTYYETCATY 163 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHH----HHHHTTTCEEEEEBTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHH----HHHHcCCCeEEEecCCC
Confidence 99999999984433332 22233322 4689999999999942211111 011111 11111235899999999
Q ss_pred CCChhhHHHHHHHHH
Q 008003 337 KTGLDDLEVALLLQA 351 (581)
Q Consensus 337 g~gI~eLl~~L~~~~ 351 (581)
|.|+++++++|....
T Consensus 164 ~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 164 GLNVERVFQDVAQKV 178 (184)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998754
No 146
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.80 E-value=5.7e-21 Score=183.41 Aligned_cols=155 Identities=16% Similarity=0.196 Sum_probs=107.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
..++|+++|++|+|||||+|+|.+..+.....++++.+.....+.+ ++ ..+.||||||++.+..++..+++.+|+++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4579999999999999999999998877766777777777777766 44 67999999999999999999999999999
Q ss_pred EEEeccCCCChhHHHH-HHHHh---hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChh
Q 008003 266 LVVAADDGVMPQTLEA-IAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~-i~~~~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~ 341 (581)
+|+|+++....+.... +..+. ..++|+++|+||+|+........ .. ...+... ..++++++||++|.|++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~-~~----~~~~~~~-~~~~~~~vSA~~g~gv~ 184 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY-TT----AKEFADS-LGIPFLETSAKNATNVE 184 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCS-CC-----CHHHHT-TTCCBCCCCC---HHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCH-HH----HHHHHHH-cCCeEEEEECCCCCCHH
Confidence 9999998543222222 22222 23789999999999964321100 00 0001000 13579999999999999
Q ss_pred hHHHHHHH
Q 008003 342 DLEVALLL 349 (581)
Q Consensus 342 eLl~~L~~ 349 (581)
+++++|..
T Consensus 185 ~l~~~l~~ 192 (199)
T 3l0i_B 185 QSFMTMAA 192 (199)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99999865
No 147
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.80 E-value=5.3e-20 Score=197.38 Aligned_cols=154 Identities=23% Similarity=0.310 Sum_probs=115.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHH-------Hhhccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM-------RKRGAA 259 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~-------~~~~~~ 259 (581)
..++|+|+|++|+|||||+|+|.+..+ ..+..+|+|.+.....+.+.+...+.||||||+.+|..+ ...++.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 457999999999999999999999876 456788999999888888844459999999999877643 345778
Q ss_pred cccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
.+|++|+|+|+ +...++...+..+...++|+++|+||+|+...........+.+ . ..++++++||++|.|
T Consensus 113 ~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~------~--~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 113 RADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYES------R--YEAKVLLVSALQKKG 182 (423)
T ss_dssp SCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSC------C--TTCCCCCCSSCCTTS
T ss_pred cCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHH------H--cCCCEEEEECCCCCC
Confidence 89999999999 5677778888888888999999999999976544322222211 1 134899999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+++++++|....
T Consensus 183 I~eL~~~L~~~l 194 (423)
T 3qq5_A 183 FDDIGKTISEIL 194 (423)
T ss_dssp TTTHHHHHHHHS
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 148
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.1e-19 Score=171.81 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=108.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+..+|+++|++|+|||||+++|.+..+.....++++.+. ...+..+ .+..+.||||||++. ...+..++..+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 3568999999999999999999999877655555554443 2333332 346799999999988 677778889999999
Q ss_pred EEEeccCCCCh----hHHHHHHHH-hhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 266 LVVAADDGVMP----QTLEAIAHA-NAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 266 lVvDa~~g~~~----~~~~~i~~~-~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
+|+|+++.... .+...+... ...++|+++|+||+|+.... .+....... .+ .++++++||++|
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-------~~--~~~~~~~Sa~~g 174 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-------EL--ACAFYECSACTG 174 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-------HH--TSEEEECCTTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-------Hh--CCeEEEECCCcC
Confidence 99999873221 122222222 23578999999999995421 111111111 11 258999999999
Q ss_pred C-ChhhHHHHHHHHH
Q 008003 338 T-GLDDLEVALLLQA 351 (581)
Q Consensus 338 ~-gI~eLl~~L~~~~ 351 (581)
. |+++++++|....
T Consensus 175 ~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 175 EGNITEIFYELCREV 189 (196)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 9 9999999998754
No 149
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.80 E-value=1.5e-19 Score=169.52 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=101.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+..+|+++|++|+|||||+++|.+..+.. ..+++. +.....+..+ ....+.+|||||++. ..+++.+|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 345799999999999999999999887654 334332 2223444442 235789999999876 34667899999
Q ss_pred EEEeccCCCChhHHHH----HHHHhh---cCCCEEEEEeCCCCCCCC-----hhhHHhhhhhccchhhhcCCcceEEEEe
Q 008003 266 LVVAADDGVMPQTLEA----IAHANA---ANVPIVVAINKCDKPAAD-----PERVKNQLGAEGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 266 lVvDa~~g~~~~~~~~----i~~~~~---~~~piIvViNK~Dl~~~~-----~~~~~~~l~~~~~~~~~~~~~~~ii~iS 333 (581)
+|+|+++....+.... +..+.. .++|+++|+||+|+.... .+....... .. ...+++++|
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-------~~-~~~~~~~~S 149 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA-------DM-KRCSYYETX 149 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH-------HH-SSEEEEEEB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH-------hh-cCCeEEEEe
Confidence 9999987433332222 222222 468999999999994211 111111111 11 235899999
Q ss_pred ccCCCChhhHHHHHHHHH
Q 008003 334 AVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 334 Aktg~gI~eLl~~L~~~~ 351 (581)
|++|.|+++++++|....
T Consensus 150 a~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 150 ATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHH
Confidence 999999999999998654
No 150
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.80 E-value=8.8e-20 Score=185.04 Aligned_cols=150 Identities=21% Similarity=0.256 Sum_probs=111.0
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh------HHHhhccc--c
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS------AMRKRGAA--V 260 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~------~~~~~~~~--~ 260 (581)
.++|+++|+||+|||||+|+|.+....++..+|+|.+.....+.. +..+.+|||||+..+. .+...++. .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 468999999999999999999998777778889998876665543 6789999999988775 34444454 6
Q ss_pred ccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 261 aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
+|++++|+|+++. ......+..+...++|+++|+||+|+..... ......+. ..+ .++++++||++|.|
T Consensus 81 ~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~------~~l--g~~vi~~SA~~g~g 150 (272)
T 3b1v_A 81 ADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLS------YHL--GVPVVATSALKQTG 150 (272)
T ss_dssp CSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHH------HHH--TSCEEECBTTTTBS
T ss_pred CCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHH------HHc--CCCEEEEEccCCCC
Confidence 9999999999872 2333444555667899999999999842110 00001111 111 25899999999999
Q ss_pred hhhHHHHHHHH
Q 008003 340 LDDLEVALLLQ 350 (581)
Q Consensus 340 I~eLl~~L~~~ 350 (581)
+++|+++|...
T Consensus 151 i~el~~~i~~~ 161 (272)
T 3b1v_A 151 VDQVVKKAAHT 161 (272)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 99999999763
No 151
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=1.3e-19 Score=196.85 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=112.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc-ccccCceeEeeeeEEEeecCCeEEEEEeCCC--------cchhhHHHhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPG--------HAAFSAMRKRG 257 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG--------~~~~~~~~~~~ 257 (581)
++.++|+|+|++|||||||+|+|.+.+.. +...+|+|++.....+.+ .+..+.+||||| ++.+......+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTT-CSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 45689999999999999999999998764 667889999998888877 788999999999 66777777888
Q ss_pred cccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCC
Q 008003 258 AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (581)
Q Consensus 258 ~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg 337 (581)
+..+|++|+|+|+.++....+.+.+..+...++|+++|+||+|+.... ........ .+ ...++++||++|
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~~-------lg-~~~~~~iSA~~g 169 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFYS-------LG-FGEPYPISGTHG 169 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSGG-------GS-SSSEEECCTTTC
T ss_pred HhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHHH-------cC-CCceEEeecccc
Confidence 999999999999999998888888888888899999999999986321 11111111 11 124679999999
Q ss_pred CChhhHHHHHHHH
Q 008003 338 TGLDDLEVALLLQ 350 (581)
Q Consensus 338 ~gI~eLl~~L~~~ 350 (581)
.|+.+|++.+...
T Consensus 170 ~gv~~L~~~i~~~ 182 (456)
T 4dcu_A 170 LGLGDLLDAVAEH 182 (456)
T ss_dssp TTHHHHHHHHHTT
T ss_pred cchHHHHHHHHhh
Confidence 9999999999764
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.79 E-value=2.6e-19 Score=193.69 Aligned_cols=161 Identities=21% Similarity=0.205 Sum_probs=115.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHH-----------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR----------- 254 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~----------- 254 (581)
...++|+|+|++|||||||+|+|.+... .++..+|+|++.....+.+ +|..+.+|||||++.+....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 3568999999999999999999998754 5778899999988888887 78899999999985443221
Q ss_pred -hhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEE
Q 008003 255 -KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVV 330 (581)
Q Consensus 255 -~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii 330 (581)
..++..+|++++|+|++++...++......+...++|+++|+||+|+...+. +.....+... +.. ....+++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREK---LYF-IDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHH---CGG-GTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHH---hcc-CCCCcEE
Confidence 2456789999999999998887777666777778999999999999975322 1122122111 111 1235899
Q ss_pred EEeccCCCChhhHHHHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~~~~ 352 (581)
++||++|.|+++|++.+.....
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987554
No 153
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.79 E-value=1.1e-19 Score=176.10 Aligned_cols=163 Identities=14% Similarity=0.199 Sum_probs=110.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
...+|+++|++|+|||||+++|.+..+.....+++..++ ...+.++ ....+.||||||++.|..++..+++.+|++|+
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 457999999999999999999999877655555554444 2334442 34789999999999999999999999999999
Q ss_pred EEeccCCCChhHH-HHH-HHHhh--cCCCEEEEEeCCCCCCCChh--hHH----hhh-hhccchhhhcCCcceEEEEecc
Q 008003 267 VVAADDGVMPQTL-EAI-AHANA--ANVPIVVAINKCDKPAADPE--RVK----NQL-GAEGLELEDWGGKVQVVEVSAV 335 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~i-~~~~~--~~~piIvViNK~Dl~~~~~~--~~~----~~l-~~~~~~~~~~~~~~~ii~iSAk 335 (581)
|+|+++....+.. ..| ..+.. .+.|+++|+||+|+...... ... ..+ .+....+....+..++++|||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 9999874322221 111 22222 47899999999999632100 000 000 0000111111123589999999
Q ss_pred -CCCChhhHHHHHHHHH
Q 008003 336 -KKTGLDDLEVALLLQA 351 (581)
Q Consensus 336 -tg~gI~eLl~~L~~~~ 351 (581)
+|.|++++++.|.+.+
T Consensus 186 ~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 186 QSENSVRDIFHVATLAC 202 (205)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 6899999999997643
No 154
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.79 E-value=2.2e-19 Score=172.01 Aligned_cols=162 Identities=17% Similarity=0.142 Sum_probs=105.1
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEee--cCCeEEEEEeCCCcchhhHHH---hhccc
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGM--STGASITFLDTPGHAAFSAMR---KRGAA 259 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~--~~g~~i~liDTpG~~~~~~~~---~~~~~ 259 (581)
...+.++|+++|++|||||||+++|.+..... ...+++.........+ .....+.||||||++.|.... ..+++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 34567899999999999999999888753322 2222322222233222 255899999999999988776 78899
Q ss_pred cccEEEEEEeccCCCChhHHHH----HHHH--hhcCCCEEEEEeCCCCCCCCh--hhHHhhhhhccchhhhc---CCcce
Q 008003 260 VTDIVVLVVAADDGVMPQTLEA----IAHA--NAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDW---GGKVQ 328 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~~~----i~~~--~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~---~~~~~ 328 (581)
.+|++|+|+|+++.. .+..+. +..+ ...++|+++|+||+|+.+.+. +............+... ...++
T Consensus 95 ~~~~~i~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 95 GTGALIYVIDAQDDY-MEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp TCSEEEEEEETTSCC-HHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred cCCEEEEEEECCCch-HHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 999999999999862 222222 2222 234789999999999864211 00111111111111110 23468
Q ss_pred EEEEeccCCCChhhHHHHHHH
Q 008003 329 VVEVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 329 ii~iSAktg~gI~eLl~~L~~ 349 (581)
++++||++ .|++++++.|..
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHH
T ss_pred eEEEEech-hhHHHHHHHHHH
Confidence 99999999 999999999875
No 155
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=171.18 Aligned_cols=154 Identities=13% Similarity=0.121 Sum_probs=103.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+..+|+++|++|+|||||+++|.+..+.....+++..++ ...+..+ ....+.||||||++.|..+ ..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 3457999999999999999999998876655555444333 2333332 3467889999999888764 56888999999
Q ss_pred EEEeccCCCChhHHH-HHHHHhh------cCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEec-
Q 008003 266 LVVAADDGVMPQTLE-AIAHANA------ANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSA- 334 (581)
Q Consensus 266 lVvDa~~g~~~~~~~-~i~~~~~------~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSA- 334 (581)
+|+|+++....+... .+..+.. .++|+++|+||+|+.... .+....... .+ .++++++||
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------~~--~~~~~e~Sa~ 167 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-------RF--GCLFFEVSAC 167 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-------HH--TCEEEECCSS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-------Hc--CCcEEEEeec
Confidence 999998743222221 1222221 478999999999995321 111111111 11 248999999
Q ss_pred cCCCChhhHHHHHHHHH
Q 008003 335 VKKTGLDDLEVALLLQA 351 (581)
Q Consensus 335 ktg~gI~eLl~~L~~~~ 351 (581)
++|.|++++++.|....
T Consensus 168 ~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 168 LDFEHVQHVFHEAVREA 184 (187)
T ss_dssp SCSHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHH
Confidence 89999999999997653
No 156
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.66 E-value=6.6e-21 Score=183.53 Aligned_cols=162 Identities=18% Similarity=0.188 Sum_probs=109.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec-CCeEEEEEeCCCcchhhHHHhhccccccEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~aDivl 265 (581)
.+..+|+++|++|+|||||+++|.+..+.....+ ++.+.....+..+ ....+.||||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4578999999999999999999998776544444 3333333333331 3456779999999999999999999999999
Q ss_pred EEEeccCCCChhHH--HHHHHHhhc--CCCEEEEEeCCCCCCCChh-h-HH-----hhhhhccchhhhcCCcceEEEEec
Q 008003 266 LVVAADDGVMPQTL--EAIAHANAA--NVPIVVAINKCDKPAADPE-R-VK-----NQLGAEGLELEDWGGKVQVVEVSA 334 (581)
Q Consensus 266 lVvDa~~g~~~~~~--~~i~~~~~~--~~piIvViNK~Dl~~~~~~-~-~~-----~~l~~~~~~~~~~~~~~~ii~iSA 334 (581)
+|+|++++...+.. ..+..+... ++|+++|+||+|+...... . .. .........+....+..+++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 99999875433332 222222222 7899999999999643210 0 00 000001111111112237899999
Q ss_pred cCCCChhhHHHHHHH
Q 008003 335 VKKTGLDDLEVALLL 349 (581)
Q Consensus 335 ktg~gI~eLl~~L~~ 349 (581)
++|.|+++++++|..
T Consensus 187 ~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 187 LTQRGLKTVFDEAIR 201 (204)
Confidence 999999999999865
No 157
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.78 E-value=3.7e-19 Score=187.69 Aligned_cols=165 Identities=22% Similarity=0.267 Sum_probs=105.8
Q ss_pred CCCCCCE-EEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCc---------chhhHHH
Q 008003 185 ILPRPPV-VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH---------AAFSAMR 254 (581)
Q Consensus 185 ~~~~~~~-V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~---------~~~~~~~ 254 (581)
..+.+.+ |+|+|++|+|||||+|+|.+........+++|+|.....+.+ +|..+.+|||||+ +.|....
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~lp~~lve~f~~tl 252 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGIPPQIVDAFFVTL 252 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE-TTEEEEEEECCCBCSSCCGGGHHHHHHHH
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE-CCEEEEEEeCCCchhcCCHHHHHHHHHHH
Confidence 3344555 999999999999999999998877777889999998888888 7789999999996 2233333
Q ss_pred hhccccccEEEEEEeccCCC--ChhH----HHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhc-CCcc
Q 008003 255 KRGAAVTDIVVLVVAADDGV--MPQT----LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDW-GGKV 327 (581)
Q Consensus 255 ~~~~~~aDivllVvDa~~g~--~~~~----~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~-~~~~ 327 (581)
..+..+|++++|+|++++. .... .+.+..+...+.|+|+|+||+|+.+............. ...+ ....
T Consensus 253 -~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l---~~~l~~~~~ 328 (364)
T 2qtf_A 253 -SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKL---SKELYSPIF 328 (364)
T ss_dssp -HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHH---HHHHCSCEE
T ss_pred -HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHH---HHHhcCCCC
Confidence 3578999999999998753 2221 22333333357899999999999754322211111000 0111 1234
Q ss_pred eEEEEeccCCCChhhHHHHHHHHHHHh
Q 008003 328 QVVEVSAVKKTGLDDLEVALLLQAEMM 354 (581)
Q Consensus 328 ~ii~iSAktg~gI~eLl~~L~~~~~~~ 354 (581)
+++++||++|.|+++|+++|.......
T Consensus 329 ~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 329 DVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 689999999999999999998765443
No 158
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.78 E-value=5.1e-19 Score=194.18 Aligned_cols=157 Identities=19% Similarity=0.172 Sum_probs=114.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.+.++|+|+|.+|+|||||+|+|.+..+.. ..+ |.+.....+.+ ++..+.||||||++.|..++..+++.+|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~--T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIP--TVGFNVETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCC--CSSEEEEEEES-SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCC--ccceeEEEEEe-CCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 345799999999999999999999877432 333 44455555666 78999999999999999999999999999999
Q ss_pred EEeccCCCChhHH-HHHHHHh----hcCCCEEEEEeCCCCCCCC-hhhHHhhhhhccchhhhcCCcceEEEEeccCCCCh
Q 008003 267 VVAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~i~~~~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI 340 (581)
|||+++....+.. ..+..+. ..++|+|+|+||+|+.... ...+...+. .... .....+++++||++|.||
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG---LTRI-RDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTT---CTTC-CSSCEEEEECBTTTTBTH
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhc---hhhh-hcCCeEEEEEECCCCCCH
Confidence 9999985433222 2222222 2478999999999996542 222222221 1111 113457999999999999
Q ss_pred hhHHHHHHHHH
Q 008003 341 DDLEVALLLQA 351 (581)
Q Consensus 341 ~eLl~~L~~~~ 351 (581)
++|+++|....
T Consensus 472 ~~l~~~l~~~~ 482 (497)
T 3lvq_E 472 YEGLTWLTSNY 482 (497)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 159
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.8e-18 Score=168.78 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=104.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCC--eEEEEEeCCCcch-hhHHHhhccccccE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAA-FSAMRKRGAAVTDI 263 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~-~~~~~~~~~~~aDi 263 (581)
...+|+|+|.+|||||||+|+|.+... .....++++.++....+.+ ++ ..+.+|||+|.+. +..+...+++.+|+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 457999999999999999999986433 2233344555554555555 44 4578999999877 55566677889999
Q ss_pred EEEEEeccCCCChhHHH-HHHHHh----hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 264 VVLVVAADDGVMPQTLE-AIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 264 vllVvDa~~g~~~~~~~-~i~~~~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
+|+|||+++....+... .+..+. ..++|+|+|+||+|+.....-.. ...... ...+ .+++++|||++|.
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~-~e~~~~---a~~~--~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSV-SEGRAC---AVVF--DCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCH-HHHHHH---HHHH--TCEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeH-HHHHHH---HHHc--CCEEEEEeCCCCC
Confidence 99999998732222221 222222 24789999999999953211000 000000 0111 2489999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
||++++++|....
T Consensus 189 ~v~elf~~l~~~i 201 (211)
T 2g3y_A 189 NVKELFEGIVRQV 201 (211)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 160
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.77 E-value=7.3e-19 Score=181.33 Aligned_cols=161 Identities=13% Similarity=0.150 Sum_probs=113.6
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh-----hHHHhhccccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-----SAMRKRGAAVT 261 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~-----~~~~~~~~~~a 261 (581)
...+|+++|++|+|||||+|+|.+.. ...+..+++|.+.....+.+.++..+.+|||||++.| ...+..+++.+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 45789999999999999999998763 3344567788877777776656889999999999988 56667788999
Q ss_pred cEEEEEEeccCCCChhHHHH----HHHHh--hcCCCEEEEEeCCCCCCCChhh-HHhhhhhccchh-hhcCC-cceEEEE
Q 008003 262 DIVVLVVAADDGVMPQTLEA----IAHAN--AANVPIVVAINKCDKPAADPER-VKNQLGAEGLEL-EDWGG-KVQVVEV 332 (581)
Q Consensus 262 DivllVvDa~~g~~~~~~~~----i~~~~--~~~~piIvViNK~Dl~~~~~~~-~~~~l~~~~~~~-~~~~~-~~~ii~i 332 (581)
|++|+|+|+++....+.... +..+. ..++|+++|+||+|+...+... ...........+ ..++. .++++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 99999999998654444332 22222 2378999999999996421111 000111111111 12221 3689999
Q ss_pred eccCCCChhhHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLL 349 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~ 349 (581)
||++ .|+.+++..+..
T Consensus 162 Sa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp CTTS-SHHHHHHHHHHH
T ss_pred eecC-ChHHHHHHHHHH
Confidence 9999 888888887764
No 161
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=9.3e-19 Score=165.92 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=101.3
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc--cccccccCceeEeeeeEEEee----cCCeEEEEEeCCCcchhhHHHhhcccccc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT--SLVAKEAGGITQHMGAFVVGM----STGASITFLDTPGHAAFSAMRKRGAAVTD 262 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~--~~~~~~~~g~T~d~~~~~~~~----~~g~~i~liDTpG~~~~~~~~~~~~~~aD 262 (581)
..+|+++|++|+|||||+++|.+. .+.....++++.++....+.. .....+.+|||||++.|..++..+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 368999999999999999999985 333334455555654444332 13578999999999999888888889999
Q ss_pred EEEEEEeccCCC-ChhHH-HHHHHHh--hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhh-hcCC--cceEEEEecc
Q 008003 263 IVVLVVAADDGV-MPQTL-EAIAHAN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELE-DWGG--KVQVVEVSAV 335 (581)
Q Consensus 263 ivllVvDa~~g~-~~~~~-~~i~~~~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~-~~~~--~~~ii~iSAk 335 (581)
++++|+|.+++. ..... ..+..+. ..+.|+++|+||+|+.... ............+. .++. ..+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEK--QRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHH--HHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccch--hhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 999999998752 11112 2222222 2478999999999996421 11100001011111 1111 1248999999
Q ss_pred CCC-ChhhHHHHHHHHH
Q 008003 336 KKT-GLDDLEVALLLQA 351 (581)
Q Consensus 336 tg~-gI~eLl~~L~~~~ 351 (581)
+|. |+++|++.|....
T Consensus 160 ~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 160 EESDALAKLRKTIINES 176 (184)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHH
Confidence 997 9999999987644
No 162
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.76 E-value=7.2e-19 Score=176.35 Aligned_cols=164 Identities=12% Similarity=0.104 Sum_probs=111.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc-ccccccCc-eeEeeeeEEEeecCCeEEEEEeCCCcchhh-----------HH
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGG-ITQHMGAFVVGMSTGASITFLDTPGHAAFS-----------AM 253 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g-~T~d~~~~~~~~~~g~~i~liDTpG~~~~~-----------~~ 253 (581)
.+.++|+|+|++|+|||||+|+|.+.. +.....++ +|++.....+.+ ++..+.||||||+.++. ..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999877 44444444 788777777777 78999999999986652 22
Q ss_pred HhhccccccEEEEEEeccCCCChhHHHHHHHHhhc-----CCCEEEEEe-CCCCCCCChhhHHhhhhh--ccchhhhcCC
Q 008003 254 RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAA-----NVPIVVAIN-KCDKPAADPERVKNQLGA--EGLELEDWGG 325 (581)
Q Consensus 254 ~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~-----~~piIvViN-K~Dl~~~~~~~~~~~l~~--~~~~~~~~~~ 325 (581)
...+++.+|++|+|+|++. ...+....+..+... +.|.++++| |+|+.+.+.......... .......++.
T Consensus 99 ~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT
T ss_pred HHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCC
Confidence 2346788999999999985 555555555555443 567777777 999975433221110000 0000111111
Q ss_pred cc-eE--EEEeccCCCChhhHHHHHHHHHH
Q 008003 326 KV-QV--VEVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 326 ~~-~i--i~iSAktg~gI~eLl~~L~~~~~ 352 (581)
.. ++ +++||++|.|+++|+++|.....
T Consensus 178 ~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 178 RICAFNNRAEGSNQDDQVKELMDCIEDLLM 207 (260)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCcccccccHHHHHHHHHHHHHHHH
Confidence 11 12 88999999999999999987654
No 163
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.75 E-value=1.7e-18 Score=165.82 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=100.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCC--eEEEEEeCCCcch-hhHHHhhccccccE
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAA-FSAMRKRGAAVTDI 263 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~-~~~~~~~~~~~aDi 263 (581)
..++|+++|.+|||||||+|+|.+... .....++++.+.....+.+ ++ ..+.+|||+|.+. +..++..+++.+|+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 347999999999999999999986432 2233344555554555555 44 4567899999766 44455667788999
Q ss_pred EEEEEeccCCCChhHHH----HHHHH-hhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCC
Q 008003 264 VVLVVAADDGVMPQTLE----AIAHA-NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (581)
Q Consensus 264 vllVvDa~~g~~~~~~~----~i~~~-~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~ 338 (581)
+++|||+++....+... .+... ...++|+++|+||+|+.....-.. . .+..+... ...+++++||++|.
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~-~----~~~~~a~~-~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV-S----EGRAXAVV-FDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH-H----HHHHHHHH-TTCEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH-H----HHHHHHHH-hCCceEEeccccCC
Confidence 99999998733222221 12222 124789999999999853111000 0 01111110 13479999999999
Q ss_pred ChhhHHHHHHHHH
Q 008003 339 GLDDLEVALLLQA 351 (581)
Q Consensus 339 gI~eLl~~L~~~~ 351 (581)
||++++++|....
T Consensus 158 ~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 158 NVKELFEGIVRQV 170 (192)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 164
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.75 E-value=3e-18 Score=176.84 Aligned_cols=162 Identities=19% Similarity=0.197 Sum_probs=111.6
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCe--EEEEEeCCCcchhhHHHhhccccccE
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGA--SITFLDTPGHAAFSAMRKRGAAVTDI 263 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~aDi 263 (581)
....++|+++|.+|+|||||+++|.+..+.....+ ++.+.....+.. ++. .+.||||||++.+...+..+++.+|+
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~-t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 229 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 229 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCC-CSEEEEEEEEEE-TTEEEEEEEEEECCCGGGTTTGGGGCTTCSE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCC-cccceeEEEEEE-CCEEEEEEEEeCCCchhhhHHHHHhccCCCE
Confidence 34568999999999999999999998877554444 444544555555 444 55699999999999999999999999
Q ss_pred EEEEEeccCCCChhHHH--HHHHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhhh---------ccchhhhcCCcceEE
Q 008003 264 VVLVVAADDGVMPQTLE--AIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGA---------EGLELEDWGGKVQVV 330 (581)
Q Consensus 264 vllVvDa~~g~~~~~~~--~i~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~ii 330 (581)
+++|+|++++...+... .+..+.. .++|+++|+||+|+..... ....+.. ....+....+..+++
T Consensus 230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 307 (332)
T 2wkq_A 230 FLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 307 (332)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHH--HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccc--hhhhccccccccccHHHHHHHHHHcCCcEEE
Confidence 99999998743322221 1222222 2789999999999954311 0000000 000111111224899
Q ss_pred EEeccCCCChhhHHHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~~~ 351 (581)
++||++|.|++++++.|....
T Consensus 308 ~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 308 ECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999997643
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.74 E-value=6.3e-18 Score=172.45 Aligned_cols=163 Identities=18% Similarity=0.205 Sum_probs=109.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc------ccccCc----------------------eeEee------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV------AKEAGG----------------------ITQHM------------ 226 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~------~~~~~g----------------------~T~d~------------ 226 (581)
...++|+|+|.+|+|||||+|+|.+..+. .+..|+ +|++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999987753 333343 22220
Q ss_pred -----------eeEEEeecCCeEEEEEeCCCcc-------------hhhHHHhhccccccEEE-EEEeccCCCChhHH-H
Q 008003 227 -----------GAFVVGMSTGASITFLDTPGHA-------------AFSAMRKRGAAVTDIVV-LVVAADDGVMPQTL-E 280 (581)
Q Consensus 227 -----------~~~~~~~~~g~~i~liDTpG~~-------------~~~~~~~~~~~~aDivl-lVvDa~~g~~~~~~-~ 280 (581)
....+..+++..++||||||+. .+..+...++..+|.++ +|+|++++...++. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0111122234789999999963 34556667888888666 79999887666554 4
Q ss_pred HHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHHH
Q 008003 281 AIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 281 ~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~ 352 (581)
.+..+...+.|+++|+||+|+.+.... ....+......+. .+..+++++||++|.|+++|+++|....+
T Consensus 184 ~~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~~~--~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 184 IAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLR--RGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSCTTCC-CHHHHTTCSSCCT--TCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHhCCCCCeEEEEEEccccCCCCch-HHHHHhCCcCcCC--CCcEEEECCChhhccccccHHHHHHHHHH
Confidence 566666678999999999999753221 1122221111110 12347899999999999999999987443
No 166
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.74 E-value=3.3e-18 Score=170.89 Aligned_cols=163 Identities=13% Similarity=0.083 Sum_probs=108.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccc--cCceeEeeeeEEEeecCCeEEEEEeCCCc--------chhhHHHhh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKE--AGGITQHMGAFVVGMSTGASITFLDTPGH--------AAFSAMRKR 256 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~--~~g~T~d~~~~~~~~~~g~~i~liDTpG~--------~~~~~~~~~ 256 (581)
...++|+++|++|+|||||+|+|++....... ..++|++.....+.. ++..+.||||||. +.+.....+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 35689999999999999999999988765433 235777777777776 7899999999996 334333333
Q ss_pred cc----ccccEEEEEEeccCCCChhHHHHHHHHhhc------CCCEEEEEeCCCCCCCChhhHHhhh--hhccchhhhcC
Q 008003 257 GA----AVTDIVVLVVAADDGVMPQTLEAIAHANAA------NVPIVVAINKCDKPAADPERVKNQL--GAEGLELEDWG 324 (581)
Q Consensus 257 ~~----~~aDivllVvDa~~g~~~~~~~~i~~~~~~------~~piIvViNK~Dl~~~~~~~~~~~l--~~~~~~~~~~~ 324 (581)
++ ..+|++|+|+|++. ....+...+..+... +.|+|+++||+|+.+.+.+...... .........++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 33 89999999999985 555555555555432 6799999999999765443332211 01111222333
Q ss_pred CcceEEEEeccC-----CCChhhHHHHHHHHHHH
Q 008003 325 GKVQVVEVSAVK-----KTGLDDLEVALLLQAEM 353 (581)
Q Consensus 325 ~~~~ii~iSAkt-----g~gI~eLl~~L~~~~~~ 353 (581)
. .++.+++.. +.|+++|++.|......
T Consensus 177 ~--~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 G--RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp T--CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 3 344554443 68999999999876543
No 167
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.72 E-value=3.8e-17 Score=171.99 Aligned_cols=157 Identities=18% Similarity=0.257 Sum_probs=111.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhh---------HHHhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS---------AMRKRG 257 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~---------~~~~~~ 257 (581)
...++|+++|.+|+|||||+|+|.+........+++|.+.....+.. ++..+.+|||||+..+. ......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 46789999999999999999999998766666777887777666666 68899999999975431 111233
Q ss_pred cccccEEEEEEeccCCC--ChhH-HHHHHHHhh--cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEE
Q 008003 258 AAVTDIVVLVVAADDGV--MPQT-LEAIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 258 ~~~aDivllVvDa~~g~--~~~~-~~~i~~~~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
...+|++++|+|++++. ..+. ...+..+.. .+.|+++|+||+|+... ..+ ...... ... ...+++++
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~--~~~-~~~~~~---~~~--~~~~~~~i 315 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADE--ENI-KRLEKF---VKE--KGLNPIKI 315 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCH--HHH-HHHHHH---HHH--TTCCCEEC
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCCh--HHH-HHHHHH---HHh--cCCCeEEE
Confidence 45699999999988743 3222 233333322 27999999999999642 111 111110 011 23579999
Q ss_pred eccCCCChhhHHHHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~~~~ 352 (581)
||++|+|+++|+++|.....
T Consensus 316 SA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 316 SALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp BTTTTBTHHHHHHHHHHHHH
T ss_pred eCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999987653
No 168
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.72 E-value=5.6e-18 Score=177.05 Aligned_cols=156 Identities=21% Similarity=0.182 Sum_probs=110.2
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcch----h---hHHHhhccccc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA----F---SAMRKRGAAVT 261 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~----~---~~~~~~~~~~a 261 (581)
.++|+|+|.+|||||||+|+|.+.+......+.+|.+.....+.++++..+.||||||+.. + .....+.+..+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 4589999999999999999999887766677788888777777774558999999999643 2 22233345669
Q ss_pred cEEEEEEeccC---CCChhHHH-HHHHHhh-----cCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEE
Q 008003 262 DIVVLVVAADD---GVMPQTLE-AIAHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 262 DivllVvDa~~---g~~~~~~~-~i~~~~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
|++|+|+|+++ ....+..+ .+..+.. .++|+++|+||+|+... ......+.. .+....+++++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~~~~l~~------~l~~~~~v~~i 309 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEAFKE------KLTDDYPVFPI 309 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHHHHH------HCCSCCCBCCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHHHHHHHH------HhhcCCCEEEE
Confidence 99999999986 22222222 2233332 47899999999999642 111111111 11112478999
Q ss_pred eccCCCChhhHHHHHHHHHH
Q 008003 333 SAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 333 SAktg~gI~eLl~~L~~~~~ 352 (581)
||++++|+++|+++|.....
T Consensus 310 SA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHT
T ss_pred ECCCCcCHHHHHHHHHHHHh
Confidence 99999999999999987653
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.71 E-value=6.6e-17 Score=155.09 Aligned_cols=153 Identities=16% Similarity=0.222 Sum_probs=107.8
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC--eEEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+ +| ..+.+|||||++.+...+..++..+|++++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 468999999999999999999998776555555555555555655 45 467899999999888777778889999999
Q ss_pred EEeccCCCChhHH-HHHHHHh---hcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 267 VVAADDGVMPQTL-EAIAHAN---AANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 267 VvDa~~g~~~~~~-~~i~~~~---~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|+|+++....+.. ..+..+. ..+.|+++|+||+|+.... ...... +. .. ..+.++++||+++.|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-l~------~~--~~~~~~d~Sal~~~~ 154 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARA-FA------EK--NNLSFIETSALDSTN 154 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH-HH------HH--TTCEEEECCTTTCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHH-HH------HH--cCCeEEEEeCCCCCC
Confidence 9999874322222 1222222 2467899999999995321 111111 11 11 235789999999999
Q ss_pred hhhHHHHHHHHH
Q 008003 340 LDDLEVALLLQA 351 (581)
Q Consensus 340 I~eLl~~L~~~~ 351 (581)
+++++++|....
T Consensus 155 i~~l~~~l~~~~ 166 (199)
T 2f9l_A 155 VEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 170
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.70 E-value=1.5e-17 Score=184.21 Aligned_cols=156 Identities=16% Similarity=0.194 Sum_probs=100.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeE------EEeec---CCeEEEEEeCCCcchhhHHHhh
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAF------VVGMS---TGASITFLDTPGHAAFSAMRKR 256 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~------~~~~~---~g~~i~liDTpG~~~~~~~~~~ 256 (581)
..+..+|+++|.+|||||||+|+|.+..+.....+++..++... .+... .+..+.+|||||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 35568999999999999999999999877654444443333322 11111 2689999999999999988888
Q ss_pred ccccccEEEEEEeccCCCChhHHHHHHHHhh--cCCCEEEEEeCCCCCCCCh---hhHHhhhhhccchhhhcCCcceEEE
Q 008003 257 GAAVTDIVVLVVAADDGVMPQTLEAIAHANA--ANVPIVVAINKCDKPAADP---ERVKNQLGAEGLELEDWGGKVQVVE 331 (581)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~~~~~~i~~~~~--~~~piIvViNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~ii~ 331 (581)
+++.+|++|+|+|+++. ......+..+.. .+.|+|+|+||+|+..... +....... .. ..++++
T Consensus 118 ~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-------~~--~~~~~~ 186 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFP-------AI--ENRFHR 186 (535)
T ss_dssp HHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCG-------GG--TTCEEE
T ss_pred HccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHH-------hc--CCceEE
Confidence 88999999999999864 222333344443 3589999999999964321 11111111 11 247999
Q ss_pred EeccCCCChhhHHHHHHHHHH
Q 008003 332 VSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 332 iSAktg~gI~eLl~~L~~~~~ 352 (581)
+||++|.|+++|+++|.....
T Consensus 187 vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 187 ISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp CCC-----CTTHHHHHHHHHT
T ss_pred EecCcccCHHHHHHHHHHHHh
Confidence 999999999999999987653
No 171
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.69 E-value=9.5e-18 Score=168.27 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=100.5
Q ss_pred CCCCCEEEEEccC---------CCCcchHhhhhhc---ccccccccCce-eEeeeeEEEe--------------e-cCCe
Q 008003 186 LPRPPVVTVMGHV---------DHGKTSLLDALRQ---TSLVAKEAGGI-TQHMGAFVVG--------------M-STGA 237 (581)
Q Consensus 186 ~~~~~~V~IvG~~---------n~GKSSLln~L~~---~~~~~~~~~g~-T~d~~~~~~~--------------~-~~g~ 237 (581)
.....+|+++|.+ |||||||+|+|.+ ..+.....+++ +.++....+. . ....
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3456899999999 9999999999998 44554444543 3333221111 1 1346
Q ss_pred EEEEEe-----------------------CCCcchhhHHHhhccc---------------------cccEEEEEEeccCC
Q 008003 238 SITFLD-----------------------TPGHAAFSAMRKRGAA---------------------VTDIVVLVVAADDG 273 (581)
Q Consensus 238 ~i~liD-----------------------TpG~~~~~~~~~~~~~---------------------~aDivllVvDa~~g 273 (581)
.+.||| ++|++.|..++..++. .||++|+|+|+++.
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 788998 5555555555555555 79999999999985
Q ss_pred --CChhHHH----HHHHH-hhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHH
Q 008003 274 --VMPQTLE----AIAHA-NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (581)
Q Consensus 274 --~~~~~~~----~i~~~-~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~ 346 (581)
...+... .+... ...++|+++|+||+|+... ..+ ...... ......++++++||++|.|+++++++
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v-~~~~~~----~~~~~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE--RYI-RDAHTF----ALSKKNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH--HHH-HHHHHH----HHTSSSCCEEECBTTTTBSHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc--HHH-HHHHHH----HHhcCCCeEEEEECCCCCCHHHHHHH
Confidence 3332222 22221 2357999999999999532 111 111111 11112358999999999999999999
Q ss_pred HHHHH
Q 008003 347 LLLQA 351 (581)
Q Consensus 347 L~~~~ 351 (581)
|....
T Consensus 249 l~~~l 253 (255)
T 3c5h_A 249 LVQLI 253 (255)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 97643
No 172
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.68 E-value=6.5e-17 Score=163.83 Aligned_cols=153 Identities=20% Similarity=0.317 Sum_probs=89.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccc--------cCceeEeeeeEEEeecCC--eEEEEEeCCCcch-------hhH
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKE--------AGGITQHMGAFVVGMSTG--ASITFLDTPGHAA-------FSA 252 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~--------~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~-------~~~ 252 (581)
++|+++|++|+|||||+|+|.+....... .++++.+.....+.. +| ..+++|||||+.+ +..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchhhHHH
Confidence 68999999999999999998876654332 344455555555543 44 4899999999732 222
Q ss_pred HH-------hhcc-------------ccccEEEEEEeccC-CCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhHH
Q 008003 253 MR-------KRGA-------------AVTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVK 310 (581)
Q Consensus 253 ~~-------~~~~-------------~~aDivllVvDa~~-g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~~ 310 (581)
+. ..++ ..+|+++++++.+. +....+.+.+..+.. ++|+|+|+||+|+..... ....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~ 166 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 166 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHH
Confidence 22 2222 23778999987665 777888888888776 899999999999863211 1111
Q ss_pred hhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHH
Q 008003 311 NQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 311 ~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~ 349 (581)
..+.. .+.. ..++++++||++++|+++|+++|..
T Consensus 167 ~~i~~---~l~~--~~i~v~~~sa~~~~~~~~l~~~l~~ 200 (274)
T 3t5d_A 167 KQIMK---EIQE--HKIKIYEFPETDDEEENKLVKKIKD 200 (274)
T ss_dssp HHHHH---HHHH--TTCCCCCC-----------CHHHHH
T ss_pred HHHHH---HHHH--cCCeEEcCCCCCChhHHHHHHHHhc
Confidence 11111 1111 2357899999999999999998865
No 173
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=156.51 Aligned_cols=162 Identities=10% Similarity=0.077 Sum_probs=102.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccC--ceeEeeeeEEEeecCCeEEEEEeCCCcc-----------hhhHH
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAG--GITQHMGAFVVGMSTGASITFLDTPGHA-----------AFSAM 253 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~--g~T~d~~~~~~~~~~g~~i~liDTpG~~-----------~~~~~ 253 (581)
...++|+++|++|+|||||+|+|++..+.....+ ++|.+.....+.+ ++..+.||||||.. .+...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999999877655544 6788877777777 78999999999943 34444
Q ss_pred HhhccccccEEEEEEeccCCCChhHHHHHHHHh-----hcCCCEEEEEeCCCCCCCC-hhhHHhhhh-hccchhhhcCCc
Q 008003 254 RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHAN-----AANVPIVVAINKCDKPAAD-PERVKNQLG-AEGLELEDWGGK 326 (581)
Q Consensus 254 ~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~-----~~~~piIvViNK~Dl~~~~-~~~~~~~l~-~~~~~~~~~~~~ 326 (581)
....+..+|++|+|+|++. ........+..+. ....|+++|+||+|+.... .++...... ........++.
T Consensus 106 ~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~- 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD- 183 (239)
T ss_dssp HHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS-
T ss_pred HHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC-
Confidence 5566778999999999975 3333344333332 2346999999999986432 111111100 01111223332
Q ss_pred ceEEEEeccCC-----CChhhHHHHHHHHHH
Q 008003 327 VQVVEVSAVKK-----TGLDDLEVALLLQAE 352 (581)
Q Consensus 327 ~~ii~iSAktg-----~gI~eLl~~L~~~~~ 352 (581)
.++++++..+ .|+.+|++.+.....
T Consensus 184 -~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 184 -RYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp -SEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 4566665543 688899988876553
No 174
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=4.1e-17 Score=158.39 Aligned_cols=144 Identities=22% Similarity=0.299 Sum_probs=89.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccc---cccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhcccc---
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA---KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAV--- 260 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~---~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~--- 260 (581)
.+.++|+++|++|+|||||+++|.+..+.. +..++++.++ .+..+.+|||||++.+...+..++..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 457899999999999999999999876543 2334333332 46789999999999998888877776
Q ss_pred -ccEEEEEEecc-CCC-ChhHHHHHHHH-------hhcCCCEEEEEeCCCCCCCCh-hhHHhhhhhccchhhhcCCcceE
Q 008003 261 -TDIVVLVVAAD-DGV-MPQTLEAIAHA-------NAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQV 329 (581)
Q Consensus 261 -aDivllVvDa~-~g~-~~~~~~~i~~~-------~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~i 329 (581)
+|++|+|+|++ +.. .......+..+ ...++|+++|+||+|+..... ......+......+... ...++
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 160 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER-RKKSL 160 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH-Hhccc
Confidence 89999999998 422 22222222222 125789999999999975432 32222222211111111 12468
Q ss_pred EEEeccCCCC
Q 008003 330 VEVSAVKKTG 339 (581)
Q Consensus 330 i~iSAktg~g 339 (581)
+++||++|.+
T Consensus 161 ~~~Sa~~~~~ 170 (218)
T 1nrj_B 161 NEVERKINEE 170 (218)
T ss_dssp HC--------
T ss_pred cccccccccc
Confidence 8999998875
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.66 E-value=6e-16 Score=149.07 Aligned_cols=160 Identities=22% Similarity=0.260 Sum_probs=102.3
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccc--cccccCceeEeeeeEEEeecCCeEEEEEeCCCcch----------hhH
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA----------FSA 252 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~--~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~----------~~~ 252 (581)
...++.+|+++|++|+|||||+|+|.+..+ .....+|+|....... + ++ .+.+|||||+.. +..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~--~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE--V-AD-GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE--E-ET-TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE--e-cC-CEEEEECcCCcccccCHHHHHHHHH
Confidence 345678999999999999999999998763 2244556665543332 3 22 688999999742 222
Q ss_pred HHhhcc---ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhH-HhhhhhccchhhhcCCcce
Q 008003 253 MRKRGA---AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV-KNQLGAEGLELEDWGGKVQ 328 (581)
Q Consensus 253 ~~~~~~---~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 328 (581)
....++ ..+|.+++++|++.+......+....+...+.|++++.||+|+........ ....... +........
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~---~~~~~~~~~ 174 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREA---VLAFNGDVQ 174 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHH---HGGGCSCEE
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHH---HHhcCCCCc
Confidence 222222 578999999999987665544555556667899999999999864211111 1111111 112222357
Q ss_pred EEEEeccCCCChhhHHHHHHHHH
Q 008003 329 VVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 329 ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
++++||+++.|+++++++|....
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEeecCCCCHHHHHHHHHHHH
Confidence 89999999999999999997754
No 176
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.66 E-value=3.4e-16 Score=161.07 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=104.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc------ccccC---ceeEe--------------------------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV------AKEAG---GITQH-------------------------------- 225 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~------~~~~~---g~T~d-------------------------------- 225 (581)
...++|+|+|++|+|||||+|+|.+..+. .+..+ .++++
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 45689999999999999999999987652 12223 12221
Q ss_pred ------------------eeeEEEeecCCeEEEEEeCCCcch-------------hhHHHhhccccccEEEEEEec-cCC
Q 008003 226 ------------------MGAFVVGMSTGASITFLDTPGHAA-------------FSAMRKRGAAVTDIVVLVVAA-DDG 273 (581)
Q Consensus 226 ------------------~~~~~~~~~~g~~i~liDTpG~~~-------------~~~~~~~~~~~aDivllVvDa-~~g 273 (581)
.....+..+++..+.||||||+.. +......++..+|++++|+|+ +.+
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 001112223557899999999753 455666788999999999998 445
Q ss_pred CChhH-HHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhc-CCcceEEEEeccC---CCChhhHHHHHH
Q 008003 274 VMPQT-LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDW-GGKVQVVEVSAVK---KTGLDDLEVALL 348 (581)
Q Consensus 274 ~~~~~-~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~-~~~~~ii~iSAkt---g~gI~eLl~~L~ 348 (581)
...+. ...+..+...+.|+++|+||+|+..... .....+.... ..+ .+..+++++||.+ +.|+.++++.+.
T Consensus 182 ~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~-~~~~~~~~~~---~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 182 LANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT-DAMEVLTGRV---IPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp STTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC-CCHHHHTTSS---SCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch-HHHHHHhCCC---ccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 44333 4666777777899999999999975432 1122222110 011 1223455566666 889999999887
Q ss_pred HHHH
Q 008003 349 LQAE 352 (581)
Q Consensus 349 ~~~~ 352 (581)
....
T Consensus 258 ~~~~ 261 (315)
T 1jwy_B 258 LYFK 261 (315)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7553
No 177
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.66 E-value=4.4e-16 Score=148.66 Aligned_cols=152 Identities=17% Similarity=0.224 Sum_probs=109.7
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCe--EEEEEeCCCcchhhHHHhhccccccEEEE
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGA--SITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~aDivll 266 (581)
.++|+|+|++|||||||+++|.+..+.....++++.++....+.+ +|. .+.+|||||++.+...+..+++.+|++++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 479999999999999999999998776666676777766666666 554 45679999999888888888889999999
Q ss_pred EEeccCCCChhHHH-HHHHH---hhcCCCEEEEEeCCCCCCCC---hhhHHhhhhhccchhhhcCCcceEEEEeccCCCC
Q 008003 267 VVAADDGVMPQTLE-AIAHA---NAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (581)
Q Consensus 267 VvDa~~g~~~~~~~-~i~~~---~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~g 339 (581)
|+|.++....+... .+..+ ...+.|+++++||+|+.+.. ..... .+. .. ..+.++.+||+++.|
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~-~l~------~~--~~~~~ld~Sald~~~ 178 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR-AFA------EK--NGLSFIETSALDSTN 178 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHH-HHH------HH--TTCEEEECCTTTCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHH-HHH------HH--cCCEEEEEeCCCCCC
Confidence 99987632222211 12222 22467899999999995321 11111 111 11 235789999999999
Q ss_pred hhhHHHHHHHH
Q 008003 340 LDDLEVALLLQ 350 (581)
Q Consensus 340 I~eLl~~L~~~ 350 (581)
++++++.|...
T Consensus 179 v~~l~~~l~~~ 189 (191)
T 1oix_A 179 VEAAFQTILTE 189 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 178
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.65 E-value=3e-16 Score=161.94 Aligned_cols=155 Identities=18% Similarity=0.174 Sum_probs=102.0
Q ss_pred EEEEEccCCCCcchHhhhhhcccccc-cccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH---HHhhccccccEEEE
Q 008003 191 VVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA---MRKRGAAVTDIVVL 266 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~~~~~-~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~---~~~~~~~~aDivll 266 (581)
+|+++|..|+|||||++++.+..... ...-+.|..+....+ .....+.+|||||+++|.. .+..+++.++++|+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~Il 78 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVY 78 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEE
Confidence 58999999999999999887653321 111123333333333 2458899999999999964 46788999999999
Q ss_pred EEeccCCCChhHHHHH----HHHh--hcCCCEEEEEeCCCCCCCChh-h-HHhhhhhccchhhhc---CCcceEEEEecc
Q 008003 267 VVAADDGVMPQTLEAI----AHAN--AANVPIVVAINKCDKPAADPE-R-VKNQLGAEGLELEDW---GGKVQVVEVSAV 335 (581)
Q Consensus 267 VvDa~~g~~~~~~~~i----~~~~--~~~~piIvViNK~Dl~~~~~~-~-~~~~l~~~~~~~~~~---~~~~~ii~iSAk 335 (581)
|+|+++. .......| ..+. ..++|+++++||+|+...+.. . .+....+.+..+.+. +..++++++||+
T Consensus 79 V~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 79 VIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp ECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 9999986 33333333 2222 247899999999999753211 0 111111112222222 135789999999
Q ss_pred CCCChhhHHHHHHH
Q 008003 336 KKTGLDDLEVALLL 349 (581)
Q Consensus 336 tg~gI~eLl~~L~~ 349 (581)
+ .||.+.|..|..
T Consensus 158 d-~nV~eAFs~iv~ 170 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQ 170 (331)
T ss_dssp S-SHHHHHHHHHHT
T ss_pred C-CcHHHHHHHHHH
Confidence 8 589999888864
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.63 E-value=5.6e-16 Score=176.38 Aligned_cols=165 Identities=18% Similarity=0.203 Sum_probs=109.2
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccccc-ccccCce--------------eEeee-----------------------
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGI--------------TQHMG----------------------- 227 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~~g~--------------T~d~~----------------------- 227 (581)
..++++|+|+|++|+|||||+|+|.+..+. ++..++| |+++.
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 346789999999999999999999987753 3445554 33220
Q ss_pred ----------------eEEEeecCC---eEEEEEeCCCcchh---hHHHhhccccccEEEEEEeccCCCChhHHHHHH-H
Q 008003 228 ----------------AFVVGMSTG---ASITFLDTPGHAAF---SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIA-H 284 (581)
Q Consensus 228 ----------------~~~~~~~~g---~~i~liDTpG~~~~---~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~-~ 284 (581)
...+.++.. ..+.||||||+... ......++..+|++|+|+|++++....+.+.+. .
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 001111100 46999999997653 345557888999999999999887777776664 4
Q ss_pred HhhcCCCEEEEEeCCCCCCCC---hh---h-------HHhhhhhccchhhh----cCCcceEEEEecc------------
Q 008003 285 ANAANVPIVVAINKCDKPAAD---PE---R-------VKNQLGAEGLELED----WGGKVQVVEVSAV------------ 335 (581)
Q Consensus 285 ~~~~~~piIvViNK~Dl~~~~---~~---~-------~~~~l~~~~~~~~~----~~~~~~ii~iSAk------------ 335 (581)
+...+.|+++|+||+|+.... .+ . +...+......... .....++++|||+
T Consensus 226 l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~ 305 (695)
T 2j69_A 226 IKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQA 305 (695)
T ss_dssp TTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTC
T ss_pred HHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchh
Confidence 455678999999999985321 11 1 11111000000000 0023479999999
Q ss_pred --CCCChhhHHHHHHHH
Q 008003 336 --KKTGLDDLEVALLLQ 350 (581)
Q Consensus 336 --tg~gI~eLl~~L~~~ 350 (581)
+|.|+++|++.|...
T Consensus 306 ~~~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 306 DLDGTGFPKFMDSLNTF 322 (695)
T ss_dssp CCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHH
Confidence 999999999988754
No 180
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.63 E-value=3.9e-16 Score=163.96 Aligned_cols=162 Identities=18% Similarity=0.205 Sum_probs=104.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc------ccccCcee----------------------Ee-------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV------AKEAGGIT----------------------QH------------- 225 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~------~~~~~g~T----------------------~d------------- 225 (581)
...++|+|+|.+|+|||||+|+|.+..+. .+..|+.+ ++
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34589999999999999999999987753 23334422 11
Q ss_pred ----------eeeEEEeecCCeEEEEEeCCCcc-------------hhhHHHhhccccc-cEEEEEEeccCCCChhHH-H
Q 008003 226 ----------MGAFVVGMSTGASITFLDTPGHA-------------AFSAMRKRGAAVT-DIVVLVVAADDGVMPQTL-E 280 (581)
Q Consensus 226 ----------~~~~~~~~~~g~~i~liDTpG~~-------------~~~~~~~~~~~~a-DivllVvDa~~g~~~~~~-~ 280 (581)
.....+..+++..++||||||.. .+..+...++..+ +++++|+|++.+...+.. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 00111222235789999999953 3445555666544 566667777765555444 4
Q ss_pred HHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 281 AIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 281 ~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
.+..+...+.|+++|+||+|+.+.... ....+......+ . .+..+++++||++|.|+++|++++....
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l-~-~~~~~v~~~SA~~~~~i~~l~~~l~~e~ 256 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPL-R-RGYIGVVNRSQKDIDGKKDITAALAAER 256 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCC-T-TCEEECCCCCHHHHHTTCCHHHHHHHHH
T ss_pred HHHHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccc-c-CCceEEEeCCcccccccccHHHHHHHHH
Confidence 666666678999999999999753221 112221111111 0 1234788999999999999999997633
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.61 E-value=1.1e-15 Score=153.77 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=85.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhcc--------
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGA-------- 258 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~-------- 258 (581)
+.++|+++|++|+|||||+|+|.+... .....+++|.+.....+.. ++..++||||||+.+|......++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 568999999999999999999998775 4556677888777777777 789999999999987754332222
Q ss_pred -ccccEEEEEEeccCC-CChhHHHHHHHHhh---c--CCCEEEEEeCCCCCC
Q 008003 259 -AVTDIVVLVVAADDG-VMPQTLEAIAHANA---A--NVPIVVAINKCDKPA 303 (581)
Q Consensus 259 -~~aDivllVvDa~~g-~~~~~~~~i~~~~~---~--~~piIvViNK~Dl~~ 303 (581)
..+|++++|+|++.. ........+..+.. . ..|+++|+||+|+..
T Consensus 114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 378999999988763 33333344443332 2 248999999999953
No 182
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.55 E-value=2.7e-15 Score=159.92 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=48.6
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec--------------------C---CeEEEEEeCCC
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--------------------T---GASITFLDTPG 246 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~--------------------~---g~~i~liDTpG 246 (581)
.+|+|+|.||+|||||+|+|.+.....+..+++|++.......+. + ..++.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 479999999999999999999988666778888887655432110 1 36899999999
Q ss_pred cchh----hHHHh---hccccccEEEEEEeccCC
Q 008003 247 HAAF----SAMRK---RGAAVTDIVVLVVAADDG 273 (581)
Q Consensus 247 ~~~~----~~~~~---~~~~~aDivllVvDa~~g 273 (581)
+... ..+.. ..++.+|++++|+|++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 457899999999999875
No 183
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3e-15 Score=141.98 Aligned_cols=110 Identities=23% Similarity=0.304 Sum_probs=74.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccc---cccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhcccc---
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA---KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAV--- 260 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~---~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~--- 260 (581)
.+.++|+++|++|+|||||+|+|.+..+.. +..++++.++ .+..+.||||||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC--------CCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 456899999999999999999999876533 2334444332 46789999999998887666665554
Q ss_pred -ccEEEEEEecc-CCCC-hhHHHHHHHH-------hhcCCCEEEEEeCCCCCCC
Q 008003 261 -TDIVVLVVAAD-DGVM-PQTLEAIAHA-------NAANVPIVVAINKCDKPAA 304 (581)
Q Consensus 261 -aDivllVvDa~-~g~~-~~~~~~i~~~-------~~~~~piIvViNK~Dl~~~ 304 (581)
+|++++|+|++ +... ......+..+ ...++|+++|+||+|+.+.
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999998 3211 1111112111 1247999999999999653
No 184
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.55 E-value=2.9e-15 Score=157.13 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=89.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc------cc-cccccC-------------------------------------ce
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT------SL-VAKEAG-------------------------------------GI 222 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~------~~-~~~~~~-------------------------------------g~ 222 (581)
+.++.|+|+|.||||||||+|+|.+. ++ .....+ |+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 45789999999999999999999752 11 111111 12
Q ss_pred eEeeeeEE--EeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCC
Q 008003 223 TQHMGAFV--VGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCD 300 (581)
Q Consensus 223 T~d~~~~~--~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~D 300 (581)
|++..... +.. .++.+.|+||||..... ......+|++++|+|++.+...+.... . -...|.++|+||+|
T Consensus 152 tr~~~~~~~~~~~-~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~--~--il~~~~ivVlNK~D 223 (349)
T 2www_A 152 TRTTNEAILLCEG-AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR--G--IIEMADLVAVTKSD 223 (349)
T ss_dssp CTTHHHHHHHHHH-TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCS
T ss_pred hHHHHHHHHhhcc-CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH--H--HHhcCCEEEEeeec
Confidence 22111100 012 57889999999964322 223468999999999987533222111 1 13568899999999
Q ss_pred CCCCCh-hhHHhhhhhc-cc-hhhhcCCcceEEEEeccCCCChhhHHHHHHHHHH
Q 008003 301 KPAADP-ERVKNQLGAE-GL-ELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 301 l~~~~~-~~~~~~l~~~-~~-~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~ 352 (581)
+.+... ......+... .. .........+++++||++|.|+++|+++|.....
T Consensus 224 l~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 224 GDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 953110 0111111110 00 0000011357899999999999999999987543
No 185
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.55 E-value=1.2e-14 Score=164.91 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=109.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccC----------------------------------------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAG---------------------------------------------- 220 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~---------------------------------------------- 220 (581)
...|+|+|+|.+|+|||||+|+|.+..+.....+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3568999999999999999999998765211111
Q ss_pred -----ceeEeeeeEEEeecCCeEEEEEeCCCcch-------------hhHHHhhcc-ccccEEEEEEeccCCCChhHH-H
Q 008003 221 -----GITQHMGAFVVGMSTGASITFLDTPGHAA-------------FSAMRKRGA-AVTDIVVLVVAADDGVMPQTL-E 280 (581)
Q Consensus 221 -----g~T~d~~~~~~~~~~g~~i~liDTpG~~~-------------~~~~~~~~~-~~aDivllVvDa~~g~~~~~~-~ 280 (581)
+++.+.....+..++...++|+||||... +..+...++ ..+|++++|+|++.+...++. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 12223333344444566799999999432 233344444 578999999999987776665 6
Q ss_pred HHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 281 AIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 281 ~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
.+..+...+.|+|+|+||+|+...... ....+......+ ..+..+++++||++|.|+++|+++|...
T Consensus 209 ll~~L~~~g~pvIlVlNKiDlv~~~~~-~~~il~~~~~~l--~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPL--RRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHCTTCSSEEEEEECTTSSCTTCC-SHHHHTTCSSCC--SSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEeCcccCCcchh-hHHHHHHHhhhh--hccCCceEEecccccccchhHHHHHHHH
Confidence 777887788999999999999754221 111111100000 0133578999999999999999999863
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.54 E-value=1e-14 Score=153.46 Aligned_cols=156 Identities=13% Similarity=0.206 Sum_probs=104.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeE------------------------------------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQ------------------------------------------ 224 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~------------------------------------------ 224 (581)
..-+.|+|+|++|+|||||+|+|.+..+.....+.+|+
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 35579999999999999999999997653222222221
Q ss_pred ------------eeeeEEEeecCCeEEEEEeCCCcchh-------------hHHHhhccccccEEEEEEeccCC--CChh
Q 008003 225 ------------HMGAFVVGMSTGASITFLDTPGHAAF-------------SAMRKRGAAVTDIVVLVVAADDG--VMPQ 277 (581)
Q Consensus 225 ------------d~~~~~~~~~~g~~i~liDTpG~~~~-------------~~~~~~~~~~aDivllVvDa~~g--~~~~ 277 (581)
+.....+..+.+..++||||||...+ ..+...++..+|++|+|+|+.+. ...+
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 11112222224567999999997765 55666788999999999987542 2244
Q ss_pred HHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHH
Q 008003 278 TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALL 348 (581)
Q Consensus 278 ~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~ 348 (581)
+...+..+...+.|+|+|+||+|+...... ....+.... .....+++++|++++.|+++++..+.
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~~~~~~~~~-----~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTD-AVEILEGRS-----FKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCC-SHHHHTTSS-----SCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCccc-HHHHHcCcc-----ccccCCeEEEEECChHHhccCCCHHH
Confidence 566666666678899999999999753221 112222111 11235789999999999988765543
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.52 E-value=3.4e-14 Score=143.42 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=84.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHH-------Hhh--c
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM-------RKR--G 257 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~-------~~~--~ 257 (581)
+.++|+++|++|+|||||+|+|.+..+ ..+..+++|.+.....+.. ++..+.||||||+.++... ..+ .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 458999999999999999999998775 3455677777776666666 7899999999998766421 112 2
Q ss_pred cccccEEEEEEeccC-CCChhHHHHHHHHhhc-C----CCEEEEEeCCCCCC
Q 008003 258 AAVTDIVVLVVAADD-GVMPQTLEAIAHANAA-N----VPIVVAINKCDKPA 303 (581)
Q Consensus 258 ~~~aDivllVvDa~~-g~~~~~~~~i~~~~~~-~----~piIvViNK~Dl~~ 303 (581)
...+|++|+|+|++. .......+.+..+... + .|+++|+||+|+..
T Consensus 117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 347999999998865 3443444555444321 2 68999999999964
No 188
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=2.3e-14 Score=150.88 Aligned_cols=152 Identities=18% Similarity=0.257 Sum_probs=76.4
Q ss_pred CCEEEEEccCCCCcchHhhhhhccccc-cccc--------CceeEeeeeEEEeecCC--eEEEEEeCCCc-------chh
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLV-AKEA--------GGITQHMGAFVVGMSTG--ASITFLDTPGH-------AAF 250 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~-~~~~--------~g~T~d~~~~~~~~~~g--~~i~liDTpG~-------~~~ 250 (581)
.++|+|+|++|+|||||+|+|.+.... .... ++++.+.....+.. ++ ..+++|||||+ +.|
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC--------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-CCcccceEEEEeccccccCccHHHH
Confidence 367999999999999999998765332 2211 33333333333333 33 37899999998 444
Q ss_pred hHHHh-------hcccc-------------ccEEEEEEec-cCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhH
Q 008003 251 SAMRK-------RGAAV-------------TDIVVLVVAA-DDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV 309 (581)
Q Consensus 251 ~~~~~-------~~~~~-------------aDivllVvDa-~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~ 309 (581)
..+.. .++.. +|+++++++. ..+....+.+.+..+ ..++|+|+|+||+|+... ..+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~~--~ev 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLTL--KER 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSCH--HHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCCH--HHH
Confidence 43332 33322 2467777765 345555555555555 367899999999999642 221
Q ss_pred H---hhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 310 K---NQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 310 ~---~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
. ..+... ... ..++++++||++|.| ++.+..+...
T Consensus 193 ~~~k~~i~~~---~~~--~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 193 ERLKKRILDE---IEE--HNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp HHHHHHHHHH---TTC--C-CCSCCCC----------CHHHHHH
T ss_pred HHHHHHHHHH---HHH--CCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 1 111111 111 135889999999998 7766666543
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.49 E-value=3.5e-14 Score=149.18 Aligned_cols=111 Identities=21% Similarity=0.209 Sum_probs=69.7
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC-hhhHHhhh
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD-PERVKNQL 313 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~-~~~~~~~l 313 (581)
.++.+.||||||...... ..+..+|++++|+|+..+...+... . ...+.|+++|+||+|+.... .......+
T Consensus 170 ~~~~~iiiDTpGi~~~~~---~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l 242 (355)
T 3p32_A 170 AGFDVILIETVGVGQSEV---AVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADGEHHKEARLAAREL 242 (355)
T ss_dssp TTCCEEEEEECSCSSHHH---HHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCGGGHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCcHHH---HHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCCcChhHHHHHHHHH
Confidence 568999999999644222 2347899999999987654332221 0 11246999999999985321 11111122
Q ss_pred hhccchhh--hcCCcceEEEEeccCCCChhhHHHHHHHHHH
Q 008003 314 GAEGLELE--DWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 314 ~~~~~~~~--~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~ 352 (581)
........ ..+...+++++||++|.|+++|+++|.....
T Consensus 243 ~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 243 SAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 11100000 0012458999999999999999999987653
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.49 E-value=8.7e-14 Score=148.77 Aligned_cols=157 Identities=26% Similarity=0.221 Sum_probs=104.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh-------hHHHhhccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-------SAMRKRGAA 259 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~-------~~~~~~~~~ 259 (581)
+.+..|+|+|++|||||||+++|.+........+.+|.+.....+..++...++++||||+... .....+.+.
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 4567899999999999999999998765555566666665555566533488999999997421 112223356
Q ss_pred cccEEEEEEeccCCCChhHHHHH-HHHh-----hcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEe
Q 008003 260 VTDIVVLVVAADDGVMPQTLEAI-AHAN-----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (581)
Q Consensus 260 ~aDivllVvDa~~g~~~~~~~~i-~~~~-----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iS 333 (581)
.+|.+++++|++ .........+ ..+. ....|.++++||+|+... .....+... +.. ...+++++|
T Consensus 235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~---l~~--~g~~vi~iS 305 (416)
T 1udx_A 235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADA---LAR--EGLAVLPVS 305 (416)
T ss_dssp SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHH---HHT--TTSCEEECC
T ss_pred HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHH---HHh--cCCeEEEEE
Confidence 799999999997 2111112111 1111 135899999999999643 111222111 111 134799999
Q ss_pred ccCCCChhhHHHHHHHHHH
Q 008003 334 AVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 334 Aktg~gI~eLl~~L~~~~~ 352 (581)
|++++|+++|+++|.....
T Consensus 306 A~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 306 ALTGAGLPALKEALHALVR 324 (416)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHH
Confidence 9999999999999988664
No 191
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.49 E-value=3.5e-14 Score=148.42 Aligned_cols=157 Identities=19% Similarity=0.190 Sum_probs=92.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc------cc-cccccCceeEe-----------------eeeEE------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT------SL-VAKEAGGITQH-----------------MGAFV------------ 230 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~------~~-~~~~~~g~T~d-----------------~~~~~------------ 230 (581)
.++..|+++|++|+|||||++.|.+. ++ .....+++|.. .....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 46789999999999999999999632 11 11111222110 00000
Q ss_pred ----------EeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCC
Q 008003 231 ----------VGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCD 300 (581)
Q Consensus 231 ----------~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~D 300 (581)
+.+ +++.+.||||||+..+... ....+|++++|+|++.+...+.... ...+.|.++|+||+|
T Consensus 134 ~~~~~~~~~~~~~-~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~D 205 (341)
T 2p67_A 134 SQRARELMLLCEA-AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHH-TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCC
T ss_pred HHHHHHHHHHhhc-cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCC
Confidence 002 5789999999998765543 3478999999999976532222111 112468899999999
Q ss_pred CCCC-ChhhHHhhhhhccchhhh--cCCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 301 KPAA-DPERVKNQLGAEGLELED--WGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 301 l~~~-~~~~~~~~l~~~~~~~~~--~~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
+.+. +.......+......+.. .....+++++||++|.|+++|+++|....
T Consensus 206 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 206 GDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9642 111111122110000000 00134789999999999999999998754
No 192
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.3e-13 Score=145.22 Aligned_cols=110 Identities=23% Similarity=0.226 Sum_probs=85.5
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchh-------hHHHhhcccccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-------SAMRKRGAAVTD 262 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~-------~~~~~~~~~~aD 262 (581)
.+|+|+|.||||||||+|+|++.+..+...|++|++.....+.+ .+.++.|+||||...- .......++.||
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 58999999999999999999999888889999999999999988 8999999999995321 122334668899
Q ss_pred EEEEEEeccCCCChhHHHHH-HHHhh-----cCCCEEEEEeCCCCC
Q 008003 263 IVVLVVAADDGVMPQTLEAI-AHANA-----ANVPIVVAINKCDKP 302 (581)
Q Consensus 263 ivllVvDa~~g~~~~~~~~i-~~~~~-----~~~piIvViNK~Dl~ 302 (581)
++++|+|++++.. +.+.+ ..+.. ...|.++++||+|..
T Consensus 152 ~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 152 LLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred ccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 9999999987432 22222 11211 356888999999973
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.44 E-value=7.2e-14 Score=135.78 Aligned_cols=150 Identities=16% Similarity=0.155 Sum_probs=91.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccc------cccccCceeEee--------eeEEEee-----------------cCC
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSL------VAKEAGGITQHM--------GAFVVGM-----------------STG 236 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~------~~~~~~g~T~d~--------~~~~~~~-----------------~~g 236 (581)
+.++|+++|++|+|||||+++|..... .....++++.|. ....+.. ..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457899999999999999999976421 111111211100 0011110 134
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCC---ChhhHHhhh
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAA---DPERVKNQL 313 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~---~~~~~~~~l 313 (581)
..+.+|||||+-.... .....++.+++|+|+..+....+. .....+.|+++|+||+|+.+. +.+.....+
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 181 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVVEK----HPEIFRVADLIVINKVALAEAVGADVEKMKADA 181 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHHHH----CHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhhhh----hhhhhhcCCEEEEecccCCcchhhHHHHHHHHH
Confidence 6789999999511100 111256889999999886433221 122235899999999998531 222222222
Q ss_pred hhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 314 GAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 314 ~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
.. .+...+++++||++|.|+++|+++|....
T Consensus 182 ~~-------~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 182 KL-------INPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HH-------HCTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HH-------hCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 21 22346899999999999999999998654
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.42 E-value=5e-13 Score=140.05 Aligned_cols=84 Identities=23% Similarity=0.187 Sum_probs=62.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC----------------CeEEEEEeCCCcchhhH
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST----------------GASITFLDTPGHAAFSA 252 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~----------------g~~i~liDTpG~~~~~~ 252 (581)
+.+|+|+|.||+|||||+|+|.+..+.....|++|.+.....+.+++ +..+.||||||+..+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 47899999999999999999999887677778888876665565532 15799999999876542
Q ss_pred H-------HhhccccccEEEEEEeccC
Q 008003 253 M-------RKRGAAVTDIVVLVVAADD 272 (581)
Q Consensus 253 ~-------~~~~~~~aDivllVvDa~~ 272 (581)
. ....++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 2234689999999999986
No 195
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.40 E-value=4.3e-13 Score=148.67 Aligned_cols=117 Identities=25% Similarity=0.332 Sum_probs=87.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccccc---ccccCceeEeeeeEE---------------------------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV---AKEAGGITQHMGAFV--------------------------------- 230 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~---~~~~~g~T~d~~~~~--------------------------------- 230 (581)
...++|+|+|.+|+|||||+|+|++..+. .+..++|++......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998763 455555533211100
Q ss_pred ---EeecCC--eEEEEEeCCCcch-----------hhHHHhhccccccEEEEEEeccC-CCChhHHHHHHHHhhcCCCEE
Q 008003 231 ---VGMSTG--ASITFLDTPGHAA-----------FSAMRKRGAAVTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIV 293 (581)
Q Consensus 231 ---~~~~~g--~~i~liDTpG~~~-----------~~~~~~~~~~~aDivllVvDa~~-g~~~~~~~~i~~~~~~~~piI 293 (581)
+.++.. ..++||||||+.. |......++..+|++|+|+|+++ +...++...+..+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 000000 3689999999865 55666778899999999999988 567777777877777778999
Q ss_pred EEEeCCCCCC
Q 008003 294 VAINKCDKPA 303 (581)
Q Consensus 294 vViNK~Dl~~ 303 (581)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999974
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.40 E-value=3.6e-13 Score=134.41 Aligned_cols=165 Identities=17% Similarity=0.184 Sum_probs=98.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhh-----ccccc-cc-ccCcee---------------EeeeeEEE-------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALR-----QTSLV-AK-EAGGIT---------------QHMGAFVV------------- 231 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~-----~~~~~-~~-~~~g~T---------------~d~~~~~~------------- 231 (581)
.+...++++|.+|+|||||++.|. +.++. .. +..+.. .+......
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 466789999999999999999997 43331 11 111110 00000000
Q ss_pred ------------eecCCeEEEEEeCCCcchhhHH------HhhccccccEEEEEEeccCCCChhHHHH-----HHHHhhc
Q 008003 232 ------------GMSTGASITFLDTPGHAAFSAM------RKRGAAVTDIVVLVVAADDGVMPQTLEA-----IAHANAA 288 (581)
Q Consensus 232 ------------~~~~g~~i~liDTpG~~~~~~~------~~~~~~~aDivllVvDa~~g~~~~~~~~-----i~~~~~~ 288 (581)
.+..++.+.||||||...+... ....+.. +++++++|+........... .......
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 0012358999999998765432 1234566 89999999976555443321 1222345
Q ss_pred CCCEEEEEeCCCCCCCCh-hhHHhhhhhccc---------------------hhhhcCCcceEEEEeccCCCChhhHHHH
Q 008003 289 NVPIVVAINKCDKPAADP-ERVKNQLGAEGL---------------------ELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (581)
Q Consensus 289 ~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~---------------------~~~~~~~~~~ii~iSAktg~gI~eLl~~ 346 (581)
+.|+++|+||+|+..... ......+.+... ....++...+++++||++|.|+++|+++
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 250 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 250 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHH
Confidence 789999999999964211 111111111000 0123333457899999999999999999
Q ss_pred HHHHHH
Q 008003 347 LLLQAE 352 (581)
Q Consensus 347 L~~~~~ 352 (581)
|.....
T Consensus 251 i~~~~~ 256 (262)
T 1yrb_A 251 AYEHYC 256 (262)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 987543
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.32 E-value=3.5e-12 Score=134.30 Aligned_cols=83 Identities=18% Similarity=0.156 Sum_probs=60.7
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeec--------------------CCeEEEEEeCCCcch
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--------------------TGASITFLDTPGHAA 249 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~--------------------~g~~i~liDTpG~~~ 249 (581)
++|+|+|.||+|||||+|+|.+........+++|.+........+ .+..+.||||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 579999999999999999999876544555666655444433321 245799999999765
Q ss_pred hh-------HHHhhccccccEEEEEEeccC
Q 008003 250 FS-------AMRKRGAAVTDIVVLVVAADD 272 (581)
Q Consensus 250 ~~-------~~~~~~~~~aDivllVvDa~~ 272 (581)
+. ......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 233346789999999999986
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.29 E-value=9e-12 Score=121.29 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=87.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeee------------eEEEeec---------------------
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMG------------AFVVGMS--------------------- 234 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~------------~~~~~~~--------------------- 234 (581)
+.++|+|+|++|+|||||+++|....+.....+.+..++. ...+.++
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4579999999999999999999875432222222222222 1111111
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCC---ChhhHHh
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAA---DPERVKN 311 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~---~~~~~~~ 311 (581)
.+..+.++||+|.-.. ...+-...+..+.++|+..+...... .... .+.|.++|+||+|+.+. ..+....
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~ 189 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIEK-HPGI---MKTADLIVINKIDLADAVGADIKKMEN 189 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTTT-CHHH---HTTCSEEEEECGGGHHHHTCCHHHHHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHhh-hhhH---hhcCCEEEEeccccCchhHHHHHHHHH
Confidence 1226778888883111 11112344667788886543211110 0111 35789999999998531 1122222
Q ss_pred hhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 312 QLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 312 ~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
.+. .++...+++++||++|.|+++|+++|....
T Consensus 190 ~~~-------~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 190 DAK-------RINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HHH-------HHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHH-------HhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 221 122345899999999999999999997654
No 199
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.29 E-value=3.7e-12 Score=130.74 Aligned_cols=156 Identities=18% Similarity=0.235 Sum_probs=78.3
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc-ccccccc--------CceeEeeeeEEEeec-CCeEEEEEeCCCc-------chhh
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT-SLVAKEA--------GGITQHMGAFVVGMS-TGASITFLDTPGH-------AAFS 251 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~-~~~~~~~--------~g~T~d~~~~~~~~~-~g~~i~liDTpG~-------~~~~ 251 (581)
.++|+|+|++|+|||||+++|.+. .+..+.. +++..+...+.+... ....+++|||||. +.+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 368899999999999999998775 3322211 111112222222221 1357899999997 4443
Q ss_pred HHHh-------hccc-------------cccEEEEEEeccC-CCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh-hhH
Q 008003 252 AMRK-------RGAA-------------VTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERV 309 (581)
Q Consensus 252 ~~~~-------~~~~-------------~aDivllVvDa~~-g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~-~~~ 309 (581)
.+.. .++. .+++++++++.+. +..+...+.+..+. .+.|+++|+||+|+..... ...
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~ 176 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERL 176 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHHH
Confidence 3322 2221 2344666666544 47776666666554 4679999999999964211 011
Q ss_pred HhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHHHH
Q 008003 310 KNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 310 ~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~ 351 (581)
.....+. .... .++++++||++| |+++++..+....
T Consensus 177 ~~~~~~~---~~~~--~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 177 KKRILDE---IEEH--NIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHH---HHHT--TCCCCCCC----------CHHHHHHH
T ss_pred HHHHHHH---HHHc--CCeEEecCCccc-cccHHHHHHHHHh
Confidence 1111111 1122 257899999999 9999999887644
No 200
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.27 E-value=1.3e-12 Score=136.20 Aligned_cols=158 Identities=20% Similarity=0.216 Sum_probs=89.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc------cccc-ccccC-------------------------------------ce
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ------TSLV-AKEAG-------------------------------------GI 222 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~------~~~~-~~~~~-------------------------------------g~ 222 (581)
.++..++|+|++|+|||||+|.|.+ .++. .+..+ |+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4678999999999999999999963 2221 11111 11
Q ss_pred eEeeeeEE--EeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCC
Q 008003 223 TQHMGAFV--VGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCD 300 (581)
Q Consensus 223 T~d~~~~~--~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~D 300 (581)
|++..... +.. .+..+.|+||||...-... ....+|++++|+|+..+...+ .+.. .....+.++++||+|
T Consensus 133 tr~~~e~~~~~~~-~~~~~iliDT~Gi~~~~~~---v~~~~d~vl~v~d~~~~~~~~---~i~~-~i~~~~~ivvlNK~D 204 (337)
T 2qm8_A 133 AAKTRETMLLCEA-AGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQ---GIKK-GIFELADMIAVNKAD 204 (337)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC---------CCT-THHHHCSEEEEECCS
T ss_pred HHHHHHHHHHHhc-CCCCEEEEECCCCCcchhh---HHhhCCEEEEEEcCCCcccHH---HHHH-HHhccccEEEEEchh
Confidence 11111000 111 5789999999997543222 236899999999986432111 0100 001246678889999
Q ss_pred CCCCChh--hHHhhhhhccchhhhc--CCcceEEEEeccCCCChhhHHHHHHHHHH
Q 008003 301 KPAADPE--RVKNQLGAEGLELEDW--GGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 301 l~~~~~~--~~~~~l~~~~~~~~~~--~~~~~ii~iSAktg~gI~eLl~~L~~~~~ 352 (581)
+...... ...+.+.......... +...+++++||++|.|+++|++.|.....
T Consensus 205 l~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 205 DGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 7532110 0111111100000000 01347899999999999999999987554
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.21 E-value=1.7e-11 Score=131.12 Aligned_cols=153 Identities=20% Similarity=0.286 Sum_probs=75.0
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccccccC--------ceeEeeeeEEEeecCC--eEEEEEeCCCcchhh-------H
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAG--------GITQHMGAFVVGMSTG--ASITFLDTPGHAAFS-------A 252 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~--------g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~~-------~ 252 (581)
++|+|+|++|+|||||+|.|.+........+ ++..+...+.+.. .+ ..+++|||||...+. .
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~-~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-------CEEEEEEECC-----------CHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec-CCcccceeeeechhhhhhccchhhHHH
Confidence 5789999999999999999998765211111 1112222222221 22 378999999976531 1
Q ss_pred HH------------------hhcccc--ccEEEEEEecc-CCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHh
Q 008003 253 MR------------------KRGAAV--TDIVVLVVAAD-DGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKN 311 (581)
Q Consensus 253 ~~------------------~~~~~~--aDivllVvDa~-~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~ 311 (581)
+. ...+.. +|++|++++.+ .+..+.+...+..+.. ++|+|+|+||+|+... ..+..
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~--~ev~~ 187 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTP--EECQQ 187 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccH--HHHHH
Confidence 10 112333 34566666665 5677777677777654 7899999999999642 22211
Q ss_pred hhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHH
Q 008003 312 QLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALL 348 (581)
Q Consensus 312 ~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~ 348 (581)
........+... .++++++||+++.++++++..|.
T Consensus 188 ~k~~i~~~~~~~--~i~~~~~sa~~~~~v~~~~~~l~ 222 (418)
T 2qag_C 188 FKKQIMKEIQEH--KIKIYEFPETDDEEENKLVKKIK 222 (418)
T ss_dssp HHHHHHHHHHHH--TCCCCCCC---------------
T ss_pred HHHHHHHHHHHc--CCeEEeCCCCCCcCHHHHHHHHH
Confidence 100000011111 35789999999999998776654
No 202
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.18 E-value=3.2e-11 Score=124.75 Aligned_cols=128 Identities=11% Similarity=0.059 Sum_probs=84.9
Q ss_pred eEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEecc-------CCCC----hhHHHHHHHHhh----
Q 008003 223 TQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAAD-------DGVM----PQTLEAIAHANA---- 287 (581)
Q Consensus 223 T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~-------~g~~----~~~~~~i~~~~~---- 287 (581)
|..+....+.. ++..+.+|||+|++.+...+..+++.++++|+|+|.+ +... ..+...+..+..
T Consensus 154 TiGi~~~~~~~-~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 154 TTGIIEYPFDL-QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred eeeEEEEEEEe-eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 33444555666 7899999999999999999999999999999999886 2211 223344443332
Q ss_pred cCCCEEEEEeCCCCCCC-------------------ChhhHHhhhhhccchh-hhcCCcceEEEEeccCCCChhhHHHHH
Q 008003 288 ANVPIVVAINKCDKPAA-------------------DPERVKNQLGAEGLEL-EDWGGKVQVVEVSAVKKTGLDDLEVAL 347 (581)
Q Consensus 288 ~~~piIvViNK~Dl~~~-------------------~~~~~~~~l~~~~~~~-~~~~~~~~ii~iSAktg~gI~eLl~~L 347 (581)
.++|+++++||+|+... +.+.....+...-... ......+.++++||+++.||+.+|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 46899999999998421 1111111111000000 011134578899999999999999998
Q ss_pred HHHH
Q 008003 348 LLQA 351 (581)
Q Consensus 348 ~~~~ 351 (581)
....
T Consensus 313 ~~~I 316 (327)
T 3ohm_A 313 KDTI 316 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
No 203
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.16 E-value=5.9e-11 Score=123.32 Aligned_cols=128 Identities=9% Similarity=0.047 Sum_probs=84.5
Q ss_pred eEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccC-----------CCChhHHHHHHHHhh----
Q 008003 223 TQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD-----------GVMPQTLEAIAHANA---- 287 (581)
Q Consensus 223 T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~-----------g~~~~~~~~i~~~~~---- 287 (581)
|..+....+.. ++..+.+|||+|++.+...+..+++.++++|+|+|+++ .....+...+..+..
T Consensus 148 TiGi~~~~~~~-~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 148 TTGIHEYDFVV-KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCSCEEEEEES-SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeEEEEEEe-eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 34445556666 78999999999999999999999999999999999982 111223333433322
Q ss_pred cCCCEEEEEeCCCCCCC------------------ChhhHHhhhhhcc------chh--hhc----------CCcceEEE
Q 008003 288 ANVPIVVAINKCDKPAA------------------DPERVKNQLGAEG------LEL--EDW----------GGKVQVVE 331 (581)
Q Consensus 288 ~~~piIvViNK~Dl~~~------------------~~~~~~~~l~~~~------~~~--~~~----------~~~~~ii~ 331 (581)
.++|+++++||+|+... +.+.....+.... ... ... +..+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 46899999999998421 0111111111110 000 000 02467899
Q ss_pred EeccCCCChhhHHHHHHHHH
Q 008003 332 VSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 332 iSAktg~gI~eLl~~L~~~~ 351 (581)
+||+++.||+.+|+.+....
T Consensus 307 TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHH
Confidence 99999999999999887643
No 204
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.09 E-value=8.3e-11 Score=123.22 Aligned_cols=128 Identities=12% Similarity=0.036 Sum_probs=87.1
Q ss_pred eEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCC-----------ChhHHHHHHHHhh----
Q 008003 223 TQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-----------MPQTLEAIAHANA---- 287 (581)
Q Consensus 223 T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-----------~~~~~~~i~~~~~---- 287 (581)
|..+....+.+ ++..+.+|||+|++.+...|..+++.++++|+|+|+++.. ..++...+..+..
T Consensus 180 T~Gi~~~~~~~-~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 180 TTGIVETHFTF-KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred eeceEEEEEee-CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 33344455666 6899999999999999999999999999999999998721 2233344444332
Q ss_pred cCCCEEEEEeCCCCCC------------------CChhhHHhhhhhccchhhh--cCCcceEEEEeccCCCChhhHHHHH
Q 008003 288 ANVPIVVAINKCDKPA------------------ADPERVKNQLGAEGLELED--WGGKVQVVEVSAVKKTGLDDLEVAL 347 (581)
Q Consensus 288 ~~~piIvViNK~Dl~~------------------~~~~~~~~~l~~~~~~~~~--~~~~~~ii~iSAktg~gI~eLl~~L 347 (581)
.++|+|+++||+|+.. .+.+.....+...-..+.. ....+.+++|||++|.||+++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 4689999999999841 1111221111110000000 1235689999999999999999999
Q ss_pred HHHH
Q 008003 348 LLQA 351 (581)
Q Consensus 348 ~~~~ 351 (581)
....
T Consensus 339 ~~~i 342 (353)
T 1cip_A 339 TDVI 342 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 205
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.04 E-value=1.3e-10 Score=119.25 Aligned_cols=134 Identities=15% Similarity=0.078 Sum_probs=91.5
Q ss_pred hHhhhhhccccc-ccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCC-ChhHHH-
Q 008003 204 SLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLE- 280 (581)
Q Consensus 204 SLln~L~~~~~~-~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-~~~~~~- 280 (581)
+|+.++....+. ....|++. +.....+. .+..+.+||| ++.|..++..+++.+|++|+|+|+++.. .....+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~--~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPD--ETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTT-CEEEEECC--CSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCc-cEEEEEEc--CCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 788888888776 55556555 33223322 2338999999 8999999999999999999999999864 333322
Q ss_pred HHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHH
Q 008003 281 AIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALL 348 (581)
Q Consensus 281 ~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~ 348 (581)
.+..+...++|+++|+||+||.+. ..+ ....+....... . .+++++||++|.|++++++.+.
T Consensus 107 ~l~~~~~~~~piilv~NK~DL~~~--~~v-~~~~~~~~~~~~--~-~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 107 FLVLAEKNELETVMVINKMDLYDE--DDL-RKVRELEEIYSG--L-YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHTTCEEEEEECCGGGCCH--HHH-HHHHHHHHHHTT--T-SCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHCCCCEEEEEeHHHcCCc--hhH-HHHHHHHHHHhh--h-CcEEEEECCCCcCHHHHHHHhc
Confidence 233344568999999999999642 111 111111111111 1 5799999999999999998774
No 206
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.01 E-value=2.9e-10 Score=120.30 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=55.6
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecC----------------CeEEEEEeCCCcc
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST----------------GASITFLDTPGHA 248 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~----------------g~~i~liDTpG~~ 248 (581)
....+.+|+|+|.||+|||||+|+|.+..+.....|++|.+.....+.+++ ...+.||||||+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 345678999999999999999999999888777888999888777776532 2359999999987
Q ss_pred hhhH-------HHhhccccccEEEEEEeccC
Q 008003 249 AFSA-------MRKRGAAVTDIVVLVVAADD 272 (581)
Q Consensus 249 ~~~~-------~~~~~~~~aDivllVvDa~~ 272 (581)
.+.. .....++.+|++++|+|+++
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 6443 34467789999999999975
No 207
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.99 E-value=3.3e-10 Score=119.01 Aligned_cols=125 Identities=10% Similarity=0.034 Sum_probs=76.8
Q ss_pred eeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCC-----------ChhHHHHHHHHhh----cCC
Q 008003 226 MGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-----------MPQTLEAIAHANA----ANV 290 (581)
Q Consensus 226 ~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~-----------~~~~~~~i~~~~~----~~~ 290 (581)
+....+.+ ++..+.+|||||++.+...+..+++.++++|+|+|+++-. .......+..+.. .++
T Consensus 191 i~~~~~~~-~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~ 269 (362)
T 1zcb_A 191 IHEYDFEI-KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 269 (362)
T ss_dssp EEEEEEEE-TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred eEEEEeee-CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence 33455666 6899999999999999999999999999999999998721 1222333333322 468
Q ss_pred CEEEEEeCCCCCC-------------------CChhhHHhhhhhccchhhhc--CCcceEEEEeccCCCChhhHHHHHHH
Q 008003 291 PIVVAINKCDKPA-------------------ADPERVKNQLGAEGLELEDW--GGKVQVVEVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 291 piIvViNK~Dl~~-------------------~~~~~~~~~l~~~~~~~~~~--~~~~~ii~iSAktg~gI~eLl~~L~~ 349 (581)
|+|+++||+|+.. .+.+.....+...-..+... ...+.++++||++|.||+++|+++..
T Consensus 270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 9999999999841 11111111110000000010 23467899999999999999999876
Q ss_pred HH
Q 008003 350 QA 351 (581)
Q Consensus 350 ~~ 351 (581)
..
T Consensus 350 ~i 351 (362)
T 1zcb_A 350 TI 351 (362)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 208
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.99 E-value=3.9e-10 Score=123.15 Aligned_cols=158 Identities=18% Similarity=0.139 Sum_probs=90.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhh------cccccc-cc---cCce--------eE-eeeeEE-----------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALR------QTSLVA-KE---AGGI--------TQ-HMGAFV----------------- 230 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~------~~~~~~-~~---~~g~--------T~-d~~~~~----------------- 230 (581)
.++..|+|+|++|+|||||++.|. +.++.. .. .++. ++ .+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346689999999999999999997 333211 10 0000 00 010011
Q ss_pred EeecCCeEEEEEeCCCcchhh----HHHhhc--cccccEEEEEEeccCCCChhHHHHHHHHhhcCCCE-EEEEeCCCCCC
Q 008003 231 VGMSTGASITFLDTPGHAAFS----AMRKRG--AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPI-VVAINKCDKPA 303 (581)
Q Consensus 231 ~~~~~g~~i~liDTpG~~~~~----~~~~~~--~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~pi-IvViNK~Dl~~ 303 (581)
+.. .++.+.||||||..... ...... +..+|.+++|+|+..+.. ....+..+.. .+|+ ++|+||+|...
T Consensus 179 ~~~-~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 179 FKN-ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA 254 (504)
T ss_dssp HHH-TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC
T ss_pred HHH-CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc
Confidence 011 57899999999965321 111111 237899999999988653 3333433333 2675 89999999863
Q ss_pred CChhhHHhhhhhccch---------hhhcCCcceEEEEeccCCCC-hhhHHHHHHH
Q 008003 304 ADPERVKNQLGAEGLE---------LEDWGGKVQVVEVSAVKKTG-LDDLEVALLL 349 (581)
Q Consensus 304 ~~~~~~~~~l~~~~~~---------~~~~~~~~~ii~iSAktg~g-I~eLl~~L~~ 349 (581)
.. ..........+.. +..+....+.+++|+.+|.| +++|++++..
T Consensus 255 ~~-g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 255 KG-GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp CC-THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred ch-HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence 32 2222221111111 11111123456789999999 9999999865
No 209
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.96 E-value=1.9e-11 Score=129.02 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=76.2
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc------cccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhHH-------Hh
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT------SLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM-------RK 255 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~------~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~~-------~~ 255 (581)
+.+|+++|.+|+|||||+|+|.+. ....+..+|+|++.....+. ..+.++||||......+ ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~----~~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE----SGATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS----TTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC----CCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 457999999999999999999886 45567788999887654432 23899999995432211 11
Q ss_pred hcc---ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCC
Q 008003 256 RGA---AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 256 ~~~---~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~ 303 (581)
..+ ...|.+++++++...........+..+...+.|+++++||+|...
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 112 678999999998532111111123334455789999999999864
No 210
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.90 E-value=3.6e-11 Score=126.84 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=71.4
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc-------cccccccCceeEeeeeEEEeecCCeEEEEEeCCCcchhhH--------H
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT-------SLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA--------M 253 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~-------~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~~~~--------~ 253 (581)
+.+|+++|.+|+|||||+|+|.+. ....+..+|+|++.....+. . .+.++||||...... .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--~--~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD--E--ESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS--S--SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec--C--CeEEEeCCCcCcHHHHHHHhhHHH
Confidence 468999999999999999999875 23356788999887665432 2 389999999643221 1
Q ss_pred Hhh--ccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCC
Q 008003 254 RKR--GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 254 ~~~--~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~ 303 (581)
... .....+.+++++|............+..+...+.|+++++||+|...
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 111 13567889999988432111111123334455789999999999864
No 211
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.79 E-value=6.2e-09 Score=110.49 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=81.6
Q ss_pred eeeEEEeecCCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccC----------CC-ChhHHHHHHHHhh----cCC
Q 008003 226 MGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD----------GV-MPQTLEAIAHANA----ANV 290 (581)
Q Consensus 226 ~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~----------g~-~~~~~~~i~~~~~----~~~ 290 (581)
+....+.+ ++..+.+|||+|++.|...+..+++.++++|+|+|+++ .. .......+..+.. .++
T Consensus 207 i~~~~~~~-~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~ 285 (402)
T 1azs_C 207 IFETKFQV-DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 285 (402)
T ss_dssp EEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSC
T ss_pred eEEEEeec-CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCC
Confidence 33455666 67999999999999999999999999999999999987 11 1222333333332 468
Q ss_pred CEEEEEeCCCCCCCChhhHH-------hhhh---------------------hccchh-----hhc------C-CcceEE
Q 008003 291 PIVVAINKCDKPAADPERVK-------NQLG---------------------AEGLEL-----EDW------G-GKVQVV 330 (581)
Q Consensus 291 piIvViNK~Dl~~~~~~~~~-------~~l~---------------------~~~~~~-----~~~------~-~~~~ii 330 (581)
|+|+|+||+|+... ++. ..+. +....+ ... + ..+.++
T Consensus 286 piiLvgNK~DL~~~---ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 286 SVILFLNKQDLLAE---KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp CEEEEEECHHHHHH---HHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred eEEEEEEChhhhhh---hhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 99999999998421 110 0000 000000 000 1 235678
Q ss_pred EEeccCCCChhhHHHHHHHHH
Q 008003 331 EVSAVKKTGLDDLEVALLLQA 351 (581)
Q Consensus 331 ~iSAktg~gI~eLl~~L~~~~ 351 (581)
++||+++.||+++|+++....
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHH
Confidence 999999999999999987643
No 212
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.78 E-value=3.6e-09 Score=110.71 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=74.8
Q ss_pred CeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccC-------CC----ChhHHHHHHHHhh----cCCCEEEEEeCCC
Q 008003 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD-------GV----MPQTLEAIAHANA----ANVPIVVAINKCD 300 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~-------g~----~~~~~~~i~~~~~----~~~piIvViNK~D 300 (581)
...+.+|||+|++.|...+..+++.++++|+|+|.++ .. ...+...+..+.. .++|+|+|+||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 4789999999999999999999999999999999971 11 1223333333332 4689999999999
Q ss_pred CCCCChhhH--------------------Hhhhhhc-cchhhhc----------CCcceEEEEeccCCCChhhHHHHHHH
Q 008003 301 KPAADPERV--------------------KNQLGAE-GLELEDW----------GGKVQVVEVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 301 l~~~~~~~~--------------------~~~l~~~-~~~~~~~----------~~~~~ii~iSAktg~gI~eLl~~L~~ 349 (581)
+........ ......+ ...+... .....++++||+++.||+++|+++..
T Consensus 262 L~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence 842100000 0000000 0000000 12345789999999999999999876
Q ss_pred HH
Q 008003 350 QA 351 (581)
Q Consensus 350 ~~ 351 (581)
..
T Consensus 342 ~I 343 (354)
T 2xtz_A 342 TL 343 (354)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.74 E-value=1.1e-08 Score=108.35 Aligned_cols=88 Identities=18% Similarity=0.136 Sum_probs=70.0
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecC----------------CeEEEEEeCCCc
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMST----------------GASITFLDTPGH 247 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~----------------g~~i~liDTpG~ 247 (581)
...++.+|+|+|+||+|||||+|+|.+... ..+..|++|.+.....+.+++ +..+.+|||||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 345688999999999999999999999877 777889999988877777632 146899999994
Q ss_pred ch-------hhHHHhhccccccEEEEEEeccC
Q 008003 248 AA-------FSAMRKRGAAVTDIVVLVVAADD 272 (581)
Q Consensus 248 ~~-------~~~~~~~~~~~aDivllVvDa~~ 272 (581)
.. +.......++.+|.+++|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 32 33344456688999999999875
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.72 E-value=2.8e-08 Score=106.02 Aligned_cols=115 Identities=16% Similarity=0.249 Sum_probs=72.3
Q ss_pred CCCCE--EEEEccCCCCcchHhhhhhcccccc----cccCceeEeeeeEEEeecCC--eEEEEEeCCCcchh--------
Q 008003 187 PRPPV--VTVMGHVDHGKTSLLDALRQTSLVA----KEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAF-------- 250 (581)
Q Consensus 187 ~~~~~--V~IvG~~n~GKSSLln~L~~~~~~~----~~~~g~T~d~~~~~~~~~~g--~~i~liDTpG~~~~-------- 250 (581)
++|-. ++|+|++|+|||||+|.|.+..+.. ...++.+++...+.+.. .+ ..++++|++|....
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~ltv~D~~~~g~~~~~~~~~~ 116 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-SNVRLKLTIVSTVGFGDQINKEDSYK 116 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-CCHHHHSH
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-Cccccccchhhhhhhhhccccchhhh
Confidence 45555 9999999999999999998864321 12344555543333332 23 37899999995321
Q ss_pred ----------hHHHhhc---------ccccc---EEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCC
Q 008003 251 ----------SAMRKRG---------AAVTD---IVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 251 ----------~~~~~~~---------~~~aD---ivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~ 303 (581)
....... ...++ ++++++|+..+....+.+.+..+. .++|+|+|+||+|...
T Consensus 117 ~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 117 PIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccc
Confidence 0111111 12233 577788888888888888888876 6889999999999864
No 215
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.65 E-value=1.1e-07 Score=101.40 Aligned_cols=159 Identities=17% Similarity=0.209 Sum_probs=93.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcccccc-c--ccCc--eeEeeeeEEEeecCCeEEEEEeCCCcch----hhHH-Hhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-K--EAGG--ITQHMGAFVVGMSTGASITFLDTPGHAA----FSAM-RKRG 257 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~~~~-~--~~~g--~T~d~~~~~~~~~~g~~i~liDTpG~~~----~~~~-~~~~ 257 (581)
.+..++|+|++|+|||||+|.|.+-.... . ...+ +|+. .+.........++++|+||... .... ....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~ 145 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMK 145 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchHHHHHHHHHHcC
Confidence 45689999999999999999998832110 0 0111 2222 1222221223689999999532 1111 1224
Q ss_pred cccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC-------CC---ChhhHHhhhhhccc-hhhhcC-C
Q 008003 258 AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP-------AA---DPERVKNQLGAEGL-ELEDWG-G 325 (581)
Q Consensus 258 ~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~-------~~---~~~~~~~~l~~~~~-~~~~~~-~ 325 (581)
+...|..++ ++... .+.+.......+...+.|+++|+||.|+. .- ....+.+.+.+... .+...+ .
T Consensus 146 L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 146 FYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 445566555 66653 45677777777777789999999999974 11 12223333332210 001111 2
Q ss_pred cceEEEEec--cCCCChhhHHHHHHHH
Q 008003 326 KVQVVEVSA--VKKTGLDDLEVALLLQ 350 (581)
Q Consensus 326 ~~~ii~iSA--ktg~gI~eLl~~L~~~ 350 (581)
...++++|+ .++.|+++|.+.|...
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~ 250 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISD 250 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHH
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHh
Confidence 236899999 6677899999999764
No 216
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.60 E-value=8.9e-08 Score=92.01 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=91.2
Q ss_pred CCCCCCEEEEEccC-CCCcchHhhhhhccccc--c-----ccc----CceeEeeeeE-EEe---ec--------------
Q 008003 185 ILPRPPVVTVMGHV-DHGKTSLLDALRQTSLV--A-----KEA----GGITQHMGAF-VVG---MS-------------- 234 (581)
Q Consensus 185 ~~~~~~~V~IvG~~-n~GKSSLln~L~~~~~~--~-----~~~----~g~T~d~~~~-~~~---~~-------------- 234 (581)
.....|++++.|+- ..=..+|+.+|....-. + ... .|++..+... .++ +.
T Consensus 12 ~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~ 91 (227)
T 3l82_B 12 IIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEH 91 (227)
T ss_dssp CCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC------------
T ss_pred ccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhh
Confidence 34567999999984 45566899988764311 1 111 2333322111 000 00
Q ss_pred --CCeEEEEEeCC------CcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHH----HHhh----cCCCEEEEEeC
Q 008003 235 --TGASITFLDTP------GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIA----HANA----ANVPIVVAINK 298 (581)
Q Consensus 235 --~g~~i~liDTp------G~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~----~~~~----~~~piIvViNK 298 (581)
...++....+| |+..+..+|..|+..+|++|||||+++.......+.+. .+.. .++|++|+.||
T Consensus 92 ~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANK 171 (227)
T 3l82_B 92 TSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCI 171 (227)
T ss_dssp -------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEE
T ss_pred hhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCC
Confidence 01123344455 68888899999999999999999999853333444442 2221 47899999999
Q ss_pred C-CCCCC-ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHHHHHHH
Q 008003 299 C-DKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLL 349 (581)
Q Consensus 299 ~-Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~ 349 (581)
. |++++ +..++.+.+.-... .....+.+|||++|+|+.+-++||..
T Consensus 172 qqDlp~Ams~~EI~e~L~L~~l-----~R~W~Iq~csA~TGeGL~EGLdWL~~ 219 (227)
T 3l82_B 172 SQGDVKRMPCFYLAHELHLNLL-----NHPWLVQDTEAETLTGFLNGIEWILE 219 (227)
T ss_dssp SSTTSCBCCHHHHHHHTTGGGG-----CSCEEEEEEETTTCTTHHHHHHHHTT
T ss_pred CcCccCCCCHHHHHHHcCCcCC-----CCCEEEEEeECCCCcCHHHHHHHHHH
Confidence 5 77654 34444444332221 23458999999999999999999975
No 217
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.52 E-value=2.5e-08 Score=107.10 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=67.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc------ccc-cc------------------------ccCceeEeeee---EEEee
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT------SLV-AK------------------------EAGGITQHMGA---FVVGM 233 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~------~~~-~~------------------------~~~g~T~d~~~---~~~~~ 233 (581)
++..|+++|++|+||||+++.|... ++. .. ..++++++... ..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999652 111 00 00012222110 00000
Q ss_pred cCCeEEEEEeCCCcchhhHH----H--hhccccccEEEEEEeccCCCChhHHHHHHHHhhcCC-C-EEEEEeCCCCC
Q 008003 234 STGASITFLDTPGHAAFSAM----R--KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANV-P-IVVAINKCDKP 302 (581)
Q Consensus 234 ~~g~~i~liDTpG~~~~~~~----~--~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~-p-iIvViNK~Dl~ 302 (581)
..++.+.|+||||....... . ...+..+|.+++|+|+..+. .....+.... ... | ..+|+||+|..
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSC
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCc
Confidence 15678999999996543211 1 12334689999999998763 2333333332 345 6 89999999985
No 218
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.47 E-value=1e-07 Score=97.54 Aligned_cols=97 Identities=20% Similarity=0.127 Sum_probs=65.9
Q ss_pred cchhhHHHhhccccccEEEEEEeccCCC-ChhHH-HHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhhcC
Q 008003 247 HAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTL-EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWG 324 (581)
Q Consensus 247 ~~~~~~~~~~~~~~aDivllVvDa~~g~-~~~~~-~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~ 324 (581)
++.+..+...++.++|++++|+|++++. ..... ..+..+...++|+++|+||+|+.+............ ....+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~---~~~~~- 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWIS---IYRDA- 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHH---HHHHT-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHH---HHHHC-
Confidence 6667777777899999999999999764 44332 333445557899999999999964210000111111 11122
Q ss_pred CcceEEEEeccCCCChhhHHHHHH
Q 008003 325 GKVQVVEVSAVKKTGLDDLEVALL 348 (581)
Q Consensus 325 ~~~~ii~iSAktg~gI~eLl~~L~ 348 (581)
.++++++||++|.|+++|++.+.
T Consensus 142 -g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 -GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHTT
T ss_pred -CCeEEEEECCCCCCHHHHHhhcc
Confidence 24899999999999999998764
No 219
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.43 E-value=5.1e-07 Score=96.73 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=79.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc------ccccc-c----------------ccCceeEeeeeEEEe------------
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ------TSLVA-K----------------EAGGITQHMGAFVVG------------ 232 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~------~~~~~-~----------------~~~g~T~d~~~~~~~------------ 232 (581)
++..|+++|.+|+||||++..|.. .++.. . ...++..........
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999853 22210 0 001111100000000
Q ss_pred ecCCeEEEEEeCCCcchhhH-----HHh-hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCCh
Q 008003 233 MSTGASITFLDTPGHAAFSA-----MRK-RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP 306 (581)
Q Consensus 233 ~~~g~~i~liDTpG~~~~~~-----~~~-~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~ 306 (581)
...++.+.|+||||...... +.. ..+..+|.+++|+|+..+. ............-.+..+|+||+|.... .
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~~-g 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSAK-G 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCSS-H
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCccc-c
Confidence 00358899999999432211 111 2234579999999998752 2333344443333456799999998532 1
Q ss_pred hhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 307 ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
......... ...|+.+++. |+++++|
T Consensus 256 G~~ls~~~~---------~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 256 GGALSAVAA---------TGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp HHHHHHHHT---------TCCCEEEEEC--SSSTTCE
T ss_pred cHHHHHHHH---------HCCCEEEEEc--CCChHHh
Confidence 122222111 1347777775 8888764
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.41 E-value=1.3e-07 Score=95.80 Aligned_cols=59 Identities=29% Similarity=0.450 Sum_probs=38.1
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc-ccccccCceeEeeeeEEEeecCCeEEEEEeCCCcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS-LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~-~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~ 248 (581)
..++.+|+++|.||+|||||+|+|.+.. ..++..+|+|++.....+ +..+.++||||..
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV----GKELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE----TTTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe----CCCEEEEECcCcC
Confidence 4567899999999999999999999876 567788899988754332 3479999999953
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.41 E-value=3.8e-07 Score=91.81 Aligned_cols=112 Identities=21% Similarity=0.323 Sum_probs=70.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcccccc-c-------ccCceeEeeeeEEEeec-CC--eEEEEEeCCCcch---------
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSLVA-K-------EAGGITQHMGAFVVGMS-TG--ASITFLDTPGHAA--------- 249 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~~~-~-------~~~g~T~d~~~~~~~~~-~g--~~i~liDTpG~~~--------- 249 (581)
++++|+|++|+|||||+|.|.+..... + ..+.++. .....+... .+ ..++++|++|...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~-~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE-IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS-CCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee-eeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 579999999999999999998743221 1 1111111 011111111 11 3689999999421
Q ss_pred -hhH--------HHhh----------ccccccEEEEEEecc-CCCChhHHHHHHHHhhcCCCEEEEEeCCCCCC
Q 008003 250 -FSA--------MRKR----------GAAVTDIVVLVVAAD-DGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (581)
Q Consensus 250 -~~~--------~~~~----------~~~~aDivllVvDa~-~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~ 303 (581)
... .... .+..+++.++++|.. .+..+.+.+.+..+... +++|+|+||+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC
Confidence 000 0000 233468889999965 68888888888888776 89999999999874
No 222
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.38 E-value=1.5e-07 Score=104.51 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=59.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEe----eeeEEEe--ecCCeEEEEEeCCCcchhhH------HH
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQH----MGAFVVG--MSTGASITFLDTPGHAAFSA------MR 254 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d----~~~~~~~--~~~g~~i~liDTpG~~~~~~------~~ 254 (581)
.+..+|+|+|.||+|||||+|+|.+..... ..+++|++ +..+... ...+..+.|+||||..+... ..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence 345789999999999999999999876432 33444433 3222221 12568899999999653321 11
Q ss_pred hhccc--cccEEEEEEeccCCCChhHHHHHHH
Q 008003 255 KRGAA--VTDIVVLVVAADDGVMPQTLEAIAH 284 (581)
Q Consensus 255 ~~~~~--~aDivllVvDa~~g~~~~~~~~i~~ 284 (581)
...+. .++ ++|||+..++..++...+..
T Consensus 115 ~fala~llss--~lv~n~~~~i~~~dl~~l~~ 144 (592)
T 1f5n_A 115 IFALAVLLSS--TFVYNSIGTINQQAMDQLYY 144 (592)
T ss_dssp HHHHHHHHCS--EEEEEEESCSSHHHHHTTHH
T ss_pred HHHHHHHhcC--eEEEECCCCccHHHHHHHHH
Confidence 10111 123 67788888888877765544
No 223
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.36 E-value=8.5e-07 Score=89.21 Aligned_cols=101 Identities=14% Similarity=0.033 Sum_probs=70.4
Q ss_pred CCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHH----HHHh----hcCCCEEEEEeC-CCCCCC-ChhhHHhhhh
Q 008003 245 PGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAI----AHAN----AANVPIVVAINK-CDKPAA-DPERVKNQLG 314 (581)
Q Consensus 245 pG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i----~~~~----~~~~piIvViNK-~Dl~~~-~~~~~~~~l~ 314 (581)
.|+..+...|..|+..+|++|+|||+++.......+.+ ..+. ..++|++|+.|| .|++++ +..++.+.+.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~ 274 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 274 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC
Confidence 36788889999999999999999999985322233322 2221 257899999996 588654 3344444333
Q ss_pred hccchhhhcCCcceEEEEeccCCCChhhHHHHHHHH
Q 008003 315 AEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 315 ~~~~~~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
-... .....+.+|||+||+|+.+-++||...
T Consensus 275 L~~l-----~r~W~Iq~csA~tGeGL~EGldWL~~~ 305 (312)
T 3l2o_B 275 LNLL-----NHPWLVQDTEAETLTGFLNGIEWILEE 305 (312)
T ss_dssp GGGG-----CSCEEEEEEETTTCTTHHHHHHHHHHH
T ss_pred CccC-----CCcEEEEecccCCCcCHHHHHHHHHHH
Confidence 2221 234589999999999999999999864
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.20 E-value=1.8e-06 Score=89.26 Aligned_cols=143 Identities=20% Similarity=0.195 Sum_probs=77.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccc-cccCceeEe----------------eeeEEEe-----------------
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQH----------------MGAFVVG----------------- 232 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~-~~~~g~T~d----------------~~~~~~~----------------- 232 (581)
.++-.++++|++|+|||||++.|.+..... ....-...| .....+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 457789999999999999999986521100 000000000 0000000
Q ss_pred -ecCCeEEEEEeCCCcchhhHH----Hh--hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC
Q 008003 233 -MSTGASITFLDTPGHAAFSAM----RK--RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD 305 (581)
Q Consensus 233 -~~~g~~i~liDTpG~~~~~~~----~~--~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~ 305 (581)
...++.+.++||+|....... .. ...-..|-.++++|+..+. +..+.+..+...--..++++||.|... .
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~a-~ 283 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDADA-R 283 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGCS-C
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCcc-c
Confidence 002456788999995332211 11 1122478899999988752 334444444322223477899999732 2
Q ss_pred hhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 306 PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
........... ..|+.+++ +|+++++|
T Consensus 284 ~G~~l~~~~~~---------~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 GGAALSISYVI---------DAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CHHHHHHHHHH---------TCCEEEEE--CSSSTTCE
T ss_pred hhHHHHHHHHH---------CCCEEEEe--CCCCcccc
Confidence 22222222222 24777777 88888765
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.19 E-value=2.8e-06 Score=86.03 Aligned_cols=102 Identities=20% Similarity=0.200 Sum_probs=65.9
Q ss_pred EEeCCCcc-hhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccch
Q 008003 241 FLDTPGHA-AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLE 319 (581)
Q Consensus 241 liDTpG~~-~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~ 319 (581)
+-+.|||. .........+..+|+++.|+|+.++....... +..+. .++|.++|+||+|+.+ ..........
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~-l~~~l-~~kp~ilVlNK~DL~~--~~~~~~~~~~---- 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPM-IEDIL-KNKPRIMLLNKADKAD--AAVTQQWKEH---- 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHH-HHHHC-SSSCEEEEEECGGGSC--HHHHHHHHHH----
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHH-HHHHH-CCCCEEEEEECcccCC--HHHHHHHHHH----
Confidence 44679986 45566677899999999999999876554322 22222 5789999999999974 2221111110
Q ss_pred hhhcCCcceEEEEeccCCCChhhHHHHHHHHHH
Q 008003 320 LEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (581)
Q Consensus 320 ~~~~~~~~~ii~iSAktg~gI~eLl~~L~~~~~ 352 (581)
++. ...+++++||++|.|+++|++.+.....
T Consensus 75 ~~~--~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 75 FEN--QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHT--TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHh--cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 111 1247899999999999999998876543
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.11 E-value=1.8e-06 Score=92.41 Aligned_cols=142 Identities=20% Similarity=0.181 Sum_probs=79.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc------ccccc-c----------------ccCceeEeeeeE----------EEe-e
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ------TSLVA-K----------------EAGGITQHMGAF----------VVG-M 233 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~------~~~~~-~----------------~~~g~T~d~~~~----------~~~-~ 233 (581)
++..|+++|++|+||||++..|.. .++.. . ...++....... .+. .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 467899999999999999999852 12110 0 001111100000 000 0
Q ss_pred -cCCeEEEEEeCCCcch------hhHHHh--hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCC
Q 008003 234 -STGASITFLDTPGHAA------FSAMRK--RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAA 304 (581)
Q Consensus 234 -~~g~~i~liDTpG~~~------~~~~~~--~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~ 304 (581)
..++.+.|+||||... +..... ......|.+++|+|+..+. +...........-.+..+++||+|...
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASPIGSVIITKMDGTA- 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCSSEEEEEECGGGCS-
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccCCcEEEEecccccc-
Confidence 1367899999999533 111111 1223469999999998752 233334444433346789999999852
Q ss_pred ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 305 DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
............ ..|+.+++. |+++++|
T Consensus 253 ~~G~als~~~~~---------g~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 253 KGGGALSAVVAT---------GATIKFIGT--GEKIDEL 280 (433)
T ss_dssp CHHHHHHHHHHH---------TCEEEEEEC--CSSSSCE
T ss_pred cchHHHHHHHHH---------CCCEEEEEC--CCChHhC
Confidence 222222222211 247888875 8888643
No 227
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.09 E-value=1.6e-05 Score=81.02 Aligned_cols=141 Identities=21% Similarity=0.230 Sum_probs=80.3
Q ss_pred CCEEEEEccCCCCcchHhhhhhc------ccccc--ccc--C-------------ceeE-------eeee---EEE-eec
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQ------TSLVA--KEA--G-------------GITQ-------HMGA---FVV-GMS 234 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~------~~~~~--~~~--~-------------g~T~-------d~~~---~~~-~~~ 234 (581)
+..++++|++|+||||++..|.. .++.. .+. + ++.. +... ..+ ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999853 12110 000 0 1100 0000 000 001
Q ss_pred -CCeEEEEEeCCCcch--hhH-HHh-----hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCCCC
Q 008003 235 -TGASITFLDTPGHAA--FSA-MRK-----RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAA 304 (581)
Q Consensus 235 -~g~~i~liDTpG~~~--~~~-~~~-----~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~~~ 304 (581)
+++.+.|+||||... ... ++. ..+..+|.+++|+|+..+ .+....+..... ..| ..+|+||+|...
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~- 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA- 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT-
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc-
Confidence 567899999999655 322 211 234578999999999864 334444444433 466 778999999742
Q ss_pred ChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhHH
Q 008003 305 DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (581)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eLl 344 (581)
............ ..|+.+++ +|+++++|.
T Consensus 254 ~~g~~~~~~~~~---------~~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 254 KGGGALSAVAAT---------GATIKFIG--TGEKIDELE 282 (297)
T ss_dssp THHHHHHHHHTT---------TCCEEEEE--CSSSTTCEE
T ss_pred chHHHHHHHHHH---------CcCEEEEe--CCCChhhcc
Confidence 222122211111 24677766 688887753
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.07 E-value=9.8e-07 Score=88.44 Aligned_cols=56 Identities=25% Similarity=0.449 Sum_probs=38.0
Q ss_pred CEEEEEccCCCCcchHhhhhhcccc-cccccCceeEeeeeEEEeecCCeEEEEEeCCCcch
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~~~ 249 (581)
.+++++|.||+|||||+|+|.+... ..+..+|+|++.... .. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~--~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWF--SL--ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEE--EC--TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEE--Ee--CCCEEEEECCCccc
Confidence 7999999999999999999998765 456778888876432 22 35789999999653
No 229
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.97 E-value=5.8e-06 Score=86.86 Aligned_cols=100 Identities=20% Similarity=0.156 Sum_probs=65.6
Q ss_pred CcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC--hhhHHhhhhhccchhhhc
Q 008003 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD--PERVKNQLGAEGLELEDW 323 (581)
Q Consensus 246 G~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~--~~~~~~~l~~~~~~~~~~ 323 (581)
..++|........+.+|++++|+|+++.. ..+...+.... .++|+++|+||+|+.+.. .+...+.+... ....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~---~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-GSWLPGLHRFV-GNNKVLLVGNKADLIPKSVKHDKVKHWMRYS---AKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-HHCCTTHHHHS-SSSCEEEEEECGGGSCTTSCHHHHHHHHHHH---HHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-ccHHHHHHHHh-CCCcEEEEEEChhcCCcccCHHHHHHHHHHH---HHHc
Confidence 35788888888888999999999998731 12222222222 378999999999996432 12222221111 1111
Q ss_pred CC-cceEEEEeccCCCChhhHHHHHHHH
Q 008003 324 GG-KVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 324 ~~-~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
+. ..+++++||++|.|+++|++.|...
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 11 1268999999999999999999754
No 230
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.96 E-value=7.6e-06 Score=86.00 Aligned_cols=100 Identities=23% Similarity=0.183 Sum_probs=66.0
Q ss_pred CcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCC--hhhHHhhhhhccchhhhc
Q 008003 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD--PERVKNQLGAEGLELEDW 323 (581)
Q Consensus 246 G~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~--~~~~~~~l~~~~~~~~~~ 323 (581)
.+++|.......+..+|++++|+|+++... .+...+.... .+.|+++|+||+|+.+.. .+...+.+... ....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-s~~~~l~~~l-~~~piilV~NK~DLl~~~~~~~~~~~~l~~~---~~~~ 131 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-SFIPGLPRFA-ADNPILLVGNKADLLPRSVKYPKLLRWMRRM---AEEL 131 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-GCCSSHHHHC-TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH---HHTT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-chhhHHHHHh-CCCCEEEEEEChhcCCCccCHHHHHHHHHHH---HHHc
Confidence 378899998888899999999999998432 2222222221 378999999999997542 12222222111 1112
Q ss_pred CC-cceEEEEeccCCCChhhHHHHHHHH
Q 008003 324 GG-KVQVVEVSAVKKTGLDDLEVALLLQ 350 (581)
Q Consensus 324 ~~-~~~ii~iSAktg~gI~eLl~~L~~~ 350 (581)
+. ..+++++||++|.|+++|++.|...
T Consensus 132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 132 GLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 11 1368999999999999999999764
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.87 E-value=2.3e-05 Score=87.78 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=42.7
Q ss_pred eEEEEEeCCCcch-------------hhHHHhhcccc-ccEEEEEEeccCCCC-hhHHHHHHHHhhcCCCEEEEEeCCCC
Q 008003 237 ASITFLDTPGHAA-------------FSAMRKRGAAV-TDIVVLVVAADDGVM-PQTLEAIAHANAANVPIVVAINKCDK 301 (581)
Q Consensus 237 ~~i~liDTpG~~~-------------~~~~~~~~~~~-aDivllVvDa~~g~~-~~~~~~i~~~~~~~~piIvViNK~Dl 301 (581)
..+.|+|.||... ...+...++.. ..+++++++++.... ......+..+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 4689999998322 22233344433 466777777654433 23355566666678899999999999
Q ss_pred CCC
Q 008003 302 PAA 304 (581)
Q Consensus 302 ~~~ 304 (581)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 743
No 232
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.63 E-value=1.1e-05 Score=80.84 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=57.0
Q ss_pred CCCcchh-hHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCCCCChhhHHhhhhhccchhhh
Q 008003 244 TPGHAAF-SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELED 322 (581)
Q Consensus 244 TpG~~~~-~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~ 322 (581)
-|||... .......+..+|+++.|+|+.++....... +. +. ++|.++|+||+||.+. ......+. .+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l~-ll--~k~~iivlNK~DL~~~--~~~~~~~~----~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-VD-FS--RKETIILLNKVDIADE--KTTKKWVE----FFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-SC-CT--TSEEEEEEECGGGSCH--HHHHHHHH----HHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-HH-hc--CCCcEEEEECccCCCH--HHHHHHHH----HHHH
Confidence 3887543 345567788999999999999865443211 11 12 7899999999999742 22111111 1111
Q ss_pred cCCcceEEEEeccCCCChhhHHHHHH
Q 008003 323 WGGKVQVVEVSAVKKTGLDDLEVALL 348 (581)
Q Consensus 323 ~~~~~~ii~iSAktg~gI~eLl~~L~ 348 (581)
. ..++ ++||++|.|+++|++.|.
T Consensus 74 ~--g~~v-~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 74 Q--GKRV-ITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp T--TCCE-EECCTTSCHHHHHHHHCC
T ss_pred c--CCeE-EEECCCCcCHHHHHHHHH
Confidence 1 2367 999999999999988764
No 233
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.61 E-value=0.00013 Score=70.06 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=65.5
Q ss_pred cCCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc--ccceEEEEEcccCCcccccCCCCcEEE--eccCCCC-
Q 008003 360 VDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEI--EGLKGLP- 434 (581)
Q Consensus 360 ~~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~--~~~kVk~i~~~~g~~v~~a~~~~~v~i--~gl~~~~- 434 (581)
.+.|+..+|.+++. +.|++++|++.+|++++||.|.+.+ ...+|++|.. +++.+.+|.||+++.+ .|+....
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~-~~~~~~~A~aGd~V~l~L~gi~~~di 79 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILS-DDVETDTVAPGENLKIRLKGIEEEEI 79 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECS-SSSCBSEECTTSEEEEEEEESSSSCC
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEE-CCEEeEEECCCCEEEEEEcCCCHHHC
Confidence 46788999999876 7899999999999999999999964 4678999975 6789999999999977 5665332
Q ss_pred CCCCeEEEeCC
Q 008003 435 MAGDDIIVVDS 445 (581)
Q Consensus 435 ~~Gd~~~~v~~ 445 (581)
..|++++...+
T Consensus 80 ~rG~vl~~~~~ 90 (204)
T 3e1y_E 80 LPGFILCDPNN 90 (204)
T ss_dssp CTTCEEBCSSS
T ss_pred ccceEEECCCC
Confidence 57998886544
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.43 E-value=0.00012 Score=78.56 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+-..|+|+|++++|||||+|+|.+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3457999999999999999999863
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.41 E-value=0.00017 Score=77.24 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=64.1
Q ss_pred CCCEEEEEccCCCCcchHhhhhh-------cccccc--cc--cCce-----------eEeeeeE------------EE-e
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALR-------QTSLVA--KE--AGGI-----------TQHMGAF------------VV-G 232 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~-------~~~~~~--~~--~~g~-----------T~d~~~~------------~~-~ 232 (581)
++..|+++|++|+||||+...|. +.++.. .. .++. ..++... .+ .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999999885 322211 00 0000 0011000 00 0
Q ss_pred ec-CCeEEEEEeCCCcchhhH-HHh-----hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCC
Q 008003 233 MS-TGASITFLDTPGHAAFSA-MRK-----RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKP 302 (581)
Q Consensus 233 ~~-~g~~i~liDTpG~~~~~~-~~~-----~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~ 302 (581)
.. .++.+.|+||||.-.+.. ... ..+..+|.+++|+|+..+. .....+.... ...+ .-+|+||+|..
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~-~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFN-EALPLTGVVLTKVDGD 253 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHH-HHSCCCCEEEECTTSS
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHh-ccCCCeEEEEecCCCC
Confidence 11 468899999999644321 111 2244689999999998753 2333333332 2345 34799999974
No 236
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.27 E-value=0.00014 Score=74.43 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=56.5
Q ss_pred hccccccEEEEEEeccCCCChhH-H-HHHHHHhhcCCCEEEEEeCCCCCCCChh-hHHhhhhhccchhhhcCCcceEEEE
Q 008003 256 RGAAVTDIVVLVVAADDGVMPQT-L-EAIAHANAANVPIVVAINKCDKPAADPE-RVKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~~~-~-~~i~~~~~~~~piIvViNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
..+.++|.+++|+|+.++..... + ..+..+...++|.++|+||+||.+.... .....+.. .+... ..+++.+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~---~y~~~--g~~v~~~ 156 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAE---DYRNI--GYDVYLT 156 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHH---HHHHH--TCCEEEC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHH---HHHhC--CCeEEEE
Confidence 46789999999999987654433 1 2223334578999999999999754220 11111111 11122 2478999
Q ss_pred eccCCCChhhHHHHH
Q 008003 333 SAVKKTGLDDLEVAL 347 (581)
Q Consensus 333 SAktg~gI~eLl~~L 347 (581)
||.+|.|+++|++.+
T Consensus 157 sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 157 SSKDQDSLADIIPHF 171 (307)
T ss_dssp CHHHHTTCTTTGGGG
T ss_pred ecCCCCCHHHHHhhc
Confidence 999999999887653
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.23 E-value=0.00058 Score=73.89 Aligned_cols=143 Identities=16% Similarity=0.186 Sum_probs=74.6
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc------cccc--cccCce-----------eEeeeeEEEe--------------
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT------SLVA--KEAGGI-----------TQHMGAFVVG-------------- 232 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~------~~~~--~~~~g~-----------T~d~~~~~~~-------------- 232 (581)
..++-.++|+|+.|+|||||++.|.+. ++.. ...... -..+....-.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 456778999999999999999998542 1111 000000 0001000000
Q ss_pred --ecCCeEEEEEeCCCcchhhH--H-----Hhhcc-----ccccEEEEEEeccCCCChhHHHHHHHHhh-cCCCEEEEEe
Q 008003 233 --MSTGASITFLDTPGHAAFSA--M-----RKRGA-----AVTDIVVLVVAADDGVMPQTLEAIAHANA-ANVPIVVAIN 297 (581)
Q Consensus 233 --~~~g~~i~liDTpG~~~~~~--~-----~~~~~-----~~aDivllVvDa~~g~~~~~~~~i~~~~~-~~~piIvViN 297 (581)
...++.+.|+||+|...... + +.+.+ ...+-++||+|++.|. .....+..+.. .++ ..+++|
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~i-tgvIlT 446 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGL-TGITLT 446 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCC-SEEEEE
T ss_pred HHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCC-CEEEEE
Confidence 01456799999999532211 1 11111 2356789999998752 22333333332 233 457899
Q ss_pred CCCCCCCChhhHHhhhhhccchhhhcCCcceEEEEeccCCCChhhH
Q 008003 298 KCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (581)
Q Consensus 298 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ii~iSAktg~gI~eL 343 (581)
|+|-. .........+...+ .|+.++ -+|+++++|
T Consensus 447 KLD~t-akgG~~lsi~~~~~---------~PI~fi--g~Ge~vdDL 480 (503)
T 2yhs_A 447 KLDGT-AKGGVIFSVADQFG---------IPIRYI--GVGERIEDL 480 (503)
T ss_dssp CGGGC-SCCTHHHHHHHHHC---------CCEEEE--ECSSSGGGE
T ss_pred cCCCc-ccccHHHHHHHHHC---------CCEEEE--ecCCChhhc
Confidence 99963 22222333222222 355553 467788765
No 238
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.11 E-value=0.0014 Score=66.88 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++-.|+|+|+.|+|||||++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 567999999999999999999864
No 239
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.99 E-value=0.0016 Score=66.85 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=39.3
Q ss_pred CCeEEEEEeCCCcchhhHHH-h------hc-----cccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCC
Q 008003 235 TGASITFLDTPGHAAFSAMR-K------RG-----AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDK 301 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~-~------~~-----~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl 301 (581)
.++.+.|+||||.-...... . .. -..+|.+++|+|+..+ ......+..... ..+ .=+|+||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~-~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSK-VADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTT-TSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhh-cCCCcEEEEeCCCC
Confidence 46889999999954432111 0 11 1347899999999854 333443333322 233 4578999997
Q ss_pred C
Q 008003 302 P 302 (581)
Q Consensus 302 ~ 302 (581)
.
T Consensus 267 ~ 267 (320)
T 1zu4_A 267 T 267 (320)
T ss_dssp C
T ss_pred C
Confidence 4
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.82 E-value=0.00043 Score=70.73 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+++|++|+||||++..|..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 3456899999999999999998853
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.73 E-value=0.00061 Score=72.64 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=39.5
Q ss_pred CCeEEEEEeCCCcchhhH-HHh-----hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCC
Q 008003 235 TGASITFLDTPGHAAFSA-MRK-----RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKP 302 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~-~~~-----~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~ 302 (581)
.++.+.|+||||.-.... ... ..+..+|.+++|+|+..+ ......+..... ..+ .-+|+||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 567899999999543221 111 122358999999999864 233333333322 233 56789999974
No 242
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.65 E-value=0.00092 Score=63.04 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=47.6
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhc-----CCCEEEEEeCCCCC
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAA-----NVPIVVAINKCDKP 302 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~-----~~piIvViNK~Dl~ 302 (581)
+.+.+.++|||+.- .......+..+|.+++++..+... ......+..+... +.++.+|+|++|..
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 45889999999865 334445667799999999988755 5556666665533 45779999999964
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.65 E-value=0.0016 Score=66.17 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=59.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc-------cccc--ccc---------------CceeEeeee------EEE-eecC
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT-------SLVA--KEA---------------GGITQHMGA------FVV-GMST 235 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~-------~~~~--~~~---------------~g~T~d~~~------~~~-~~~~ 235 (581)
.++..|+++|++|+||||++..|... ++.. .+. .+....... ..+ .. .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~ 181 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S 181 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence 45779999999999999999988532 1110 000 000000000 000 11 4
Q ss_pred CeEEEEEeCCCcchhhHH----Hhhccc--cccEEEEEEeccCCCChhHHHH-HHHHhhcCCCEEEEEeCCCCC
Q 008003 236 GASITFLDTPGHAAFSAM----RKRGAA--VTDIVVLVVAADDGVMPQTLEA-IAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 236 g~~i~liDTpG~~~~~~~----~~~~~~--~aDivllVvDa~~g~~~~~~~~-i~~~~~~~~piIvViNK~Dl~ 302 (581)
++.+.|+||||....... ....+. ..|.+++|+|++.+. +.... .......+. .-+++||.|..
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~~~~~~~~~~~~l~~-~giVltk~D~~ 252 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--EDMKHIVKRFSSVPV-NQYIFTKIDET 252 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--HHHHHHTTTTSSSCC-CEEEEECTTTC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--HHHHHHHHHHhcCCC-CEEEEeCCCcc
Confidence 578999999996543221 112222 367789999887532 22221 122221222 34567999975
No 244
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.47 E-value=0.0035 Score=65.27 Aligned_cols=85 Identities=25% Similarity=0.235 Sum_probs=51.2
Q ss_pred hccccccEEEEEEeccCCCC-hhHH-HHHHHHhhcCCCEEEEEeCCCCCCCChhh-HHhhhhhccchhhhcCCcceEEEE
Q 008003 256 RGAAVTDIVVLVVAADDGVM-PQTL-EAIAHANAANVPIVVAINKCDKPAADPER-VKNQLGAEGLELEDWGGKVQVVEV 332 (581)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~-~~~~-~~i~~~~~~~~piIvViNK~Dl~~~~~~~-~~~~l~~~~~~~~~~~~~~~ii~i 332 (581)
..+.++|.+++|.+ ..+.. ...+ ..+..+...++|.++|+||+||.+..... ....+. .+... .++++++
T Consensus 126 ~i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~----~y~~~--G~~v~~~ 198 (358)
T 2rcn_A 126 PIAANIDQIVIVSA-ILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMD----IYRNI--GYRVLMV 198 (358)
T ss_dssp EEEECCCEEEEEEE-STTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHH----HHHTT--TCCEEEC
T ss_pred HHHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHH----HHHhC--CCcEEEE
Confidence 34688999997754 44322 2211 12223345689999999999997432101 111111 11222 3478999
Q ss_pred eccCCCChhhHHHHH
Q 008003 333 SAVKKTGLDDLEVAL 347 (581)
Q Consensus 333 SAktg~gI~eLl~~L 347 (581)
||.+|.|+++|...+
T Consensus 199 Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 199 SSHTQDGLKPLEEAL 213 (358)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred ecCCCcCHHHHHHhc
Confidence 999999999987654
No 245
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.44 E-value=0.00074 Score=68.94 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=34.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccc-cccccC-------ceeEeeeeEEEeecCCeEEEEEeCCCcchh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAG-------GITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~-~~~~~~-------g~T~d~~~~~~~~~~g~~i~liDTpG~~~~ 250 (581)
.++..++|+|++|+|||||+|.|.+... ..+... ++|++.. .+.. . ...++||||...+
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~-~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHT-S--GGLVADTPGFSSL 237 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEE-T--TEEEESSCSCSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--Hhhc-C--CEEEecCCCcccc
Confidence 3577999999999999999999987532 111111 3443322 1222 1 2478999996543
No 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.21 E-value=0.00098 Score=63.60 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=39.9
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccc--cccccCceeEeeeeEEEeecCCeEEEEEeCCC
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHMGAFVVGMSTGASITFLDTPG 246 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~--~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG 246 (581)
..++..|+|+|++|+|||||++.|.+... .......||+...... . +|..+.|+|++.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~-~G~~y~fvs~~~ 75 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--E-DGKEYHFISTEE 75 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--C-TTSSCEECCHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--e-ccccceeccHHH
Confidence 34677899999999999999999986432 2334455666554432 2 566677776554
No 247
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.16 E-value=0.0032 Score=64.00 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALR 210 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~ 210 (581)
.+..++++|++|+|||||+|.|.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999998
No 248
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.13 E-value=0.0029 Score=65.84 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=23.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
.+-.++|+|++|+|||||+|.|.+..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 46789999999999999999998754
No 249
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.03 E-value=0.0025 Score=64.65 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=38.5
Q ss_pred CCeEEEEEeCCCcchhhH--HHh----hccccccEEEEEEeccCCCChhHHHHHHHHhhcCCC-EEEEEeCCCCC
Q 008003 235 TGASITFLDTPGHAAFSA--MRK----RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKP 302 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~--~~~----~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~p-iIvViNK~Dl~ 302 (581)
.++.+.|+||||.-.... +.. ...-.+|.+++|+|+..+ .+..+.+..... ..+ .-+|+||+|..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGC
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCC
Confidence 357899999998532211 111 111247888999998753 333333333332 233 45789999974
No 250
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=95.98 E-value=0.031 Score=48.07 Aligned_cols=79 Identities=22% Similarity=0.204 Sum_probs=57.1
Q ss_pred CCCcceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc-ccceEEEEEcccCCcccccCCCCcEEEe--ccCCCCCCC
Q 008003 361 DGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH-EWGRIRAIRDMVGKSTDKARPAMPVEIE--GLKGLPMAG 437 (581)
Q Consensus 361 ~~~~~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~-~~~kVk~i~~~~g~~v~~a~~~~~v~i~--gl~~~~~~G 437 (581)
-.|....++....--+ |+++.|.|.+|+|++|+.| =+. ..++|++|.. +++.+.+|.||+.|.+. |..--...|
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V-Pg~~~vg~VkSIE~-~~e~v~eA~~GdnVai~Ikg~~~~I~~G 108 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV-KGPSGIGGIVRIER-NREKVEFAIAGDRIGISIEGKIGKVKKG 108 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE-ECSSCEEEEEEEEE-TTEEESEEETTCEEEEEEESCCCCCCTT
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc-CCCceEEEEEEEEE-CCcCcCCcCCCCEEEEEEECCccccCCC
Confidence 3455555555222233 8889999999999999999 455 5789999985 78899999999999663 322113578
Q ss_pred CeEEE
Q 008003 438 DDIIV 442 (581)
Q Consensus 438 d~~~~ 442 (581)
|.+++
T Consensus 109 dVLyv 113 (116)
T 1xe1_A 109 DVLEI 113 (116)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87765
No 251
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.92 E-value=0.0015 Score=70.66 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=60.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCC-eEEEEEeCCCcchh--hHHH--------h
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG-ASITFLDTPGHAAF--SAMR--------K 255 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g-~~i~liDTpG~~~~--~~~~--------~ 255 (581)
..+..|+++|.||+||||+..+|...-... ..+....+.........++ ....+||+.|.+.+ ...+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999997642211 0110000000000011011 34467899997433 2222 3
Q ss_pred hccccccEEEEEEeccCCCChhHHHHH-HHHhhcCCCEEEEEeCCC
Q 008003 256 RGAAVTDIVVLVVAADDGVMPQTLEAI-AHANAANVPIVVAINKCD 300 (581)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~~~~~~i-~~~~~~~~piIvViNK~D 300 (581)
.++..+++.++|+|+++.. ....+.+ ..+...+.+++++-..++
T Consensus 116 ~~l~~~~G~~vV~D~tn~~-~~~R~~~~~~~~~~~~~vv~l~~~~~ 160 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT-RERRAMIFNFGEQNGYKTFFVESICV 160 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS-HHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHHHhCCCCEEEEeCCCCC-HHHHHHHHHHHHhcCCcEEEEEEECC
Confidence 4455577889999998753 3333333 444445666666554444
No 252
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.88 E-value=0.004 Score=59.49 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=45.5
Q ss_pred CCeEEEEEeCCCc-chhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhh-cCCCEEEEEeCCCCCC
Q 008003 235 TGASITFLDTPGH-AAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANA-ANVPIVVAINKCDKPA 303 (581)
Q Consensus 235 ~g~~i~liDTpG~-~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~-~~~piIvViNK~Dl~~ 303 (581)
..+.+.++|||+. ... .....+..+|.+|+++..+..........+..+.. .+.++.+|+|++|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 4678999999986 332 23345678999999998764333333444455544 2677899999999753
No 253
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.49 E-value=0.0053 Score=62.24 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
.+-.++++|++|+|||||+|.|.+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 45689999999999999999998753
No 254
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.34 E-value=0.0072 Score=56.13 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=22.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
++..++|+|++|+|||||++.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999999999999764
No 255
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.19 E-value=0.0063 Score=57.59 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=21.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+..++|+|++|+|||||++.|.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567999999999999999999763
No 256
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.09 E-value=0.028 Score=56.69 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhh----cCCCEE-EEEeCCCC
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANA----ANVPIV-VAINKCDK 301 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~----~~~piI-vViNK~Dl 301 (581)
+.+.+.++|||+.-... .....+..+|.+|+|+..+..........+..+.. .+.+++ +|+|+++.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 45789999998843322 12235678999999997754222223333444443 345544 89999984
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.07 E-value=0.0095 Score=55.92 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
++..++|+|++|+|||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 5678999999999999999999764
No 258
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.92 E-value=0.01 Score=55.07 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..++|+|++|+|||||++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999999875
No 259
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.88 E-value=0.01 Score=55.38 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchHhhhhhcc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+++|+|++|+|||||++.|.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.87 E-value=0.01 Score=56.36 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.6
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++..|+|+|++|+|||||++.|.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356779999999999999999999764
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.82 E-value=0.012 Score=55.95 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
...++-.++|+|++|+|||||++.|.+-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567788999999999999999999764
No 262
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.66 E-value=0.015 Score=55.39 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+++..|+|+|++|+|||||++.|.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 46778999999999999999999765
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.65 E-value=0.014 Score=54.70 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=23.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
+++..|+|+|++|+|||||++.|.+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467789999999999999999997653
No 264
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.65 E-value=0.013 Score=56.50 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=23.4
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
.+++..++|+|++|+|||||++.|.+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3567899999999999999999998753
No 265
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.60 E-value=0.012 Score=56.48 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=23.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
..++-.++|+|++|+|||||++.|.+..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3467789999999999999999998743
No 266
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.59 E-value=0.0049 Score=58.14 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=24.8
Q ss_pred EEEEccCCCCcchHhhhhhcccc--cccccCceeEee
Q 008003 192 VTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHM 226 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~~~--~~~~~~g~T~d~ 226 (581)
|+|+|++|+|||||+++|..... ..-..+.||+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 78999999999999999976421 222344455543
No 267
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.51 E-value=0.013 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.6
Q ss_pred CEEEEEccCCCCcchHhhhhhcc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++|+|++|+|||||++.|.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999864
No 268
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.34 E-value=0.043 Score=58.60 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=50.2
Q ss_pred CCEEEEEccCCCCcchHhhhhhc------------------cccccc-ccCceeEeeeeE----EEeecCC--eEEEEEe
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQ------------------TSLVAK-EAGGITQHMGAF----VVGMSTG--ASITFLD 243 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~------------------~~~~~~-~~~g~T~d~~~~----~~~~~~g--~~i~liD 243 (581)
-..|+|+|..++|||+|+|.|.+ ..+..+ .....|..+-.+ .+..++| ..+.|+|
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD 146 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence 35788999999999999996641 122221 112233333222 1222233 5699999
Q ss_pred CCCcchhhH-----HHh--hccccccEEEEEEeccCCCChhHHHHHHH
Q 008003 244 TPGHAAFSA-----MRK--RGAAVTDIVVLVVAADDGVMPQTLEAIAH 284 (581)
Q Consensus 244 TpG~~~~~~-----~~~--~~~~~aDivllVvDa~~g~~~~~~~~i~~ 284 (581)
|.|..+... .+. -.+--+++.| |.....+..++++.+..
T Consensus 147 TEG~~d~~~~~~~d~~ifaLa~LLSS~~I--yN~~~~i~~~~L~~L~~ 192 (457)
T 4ido_A 147 TQGTFDSQSTLRDSATVFALSTMISSIQV--YNLSQNVQEDDLQHLQL 192 (457)
T ss_dssp ECCBTCTTCCHHHHHHHHHHHHHHCSEEE--EEEESSCCHHHHHHHHH
T ss_pred ccCCCCcccCccccHHHHHHHHHHhhhee--ecccccCCHHHHHHHHH
Confidence 999533221 111 1122345444 44444566677666644
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.18 E-value=0.017 Score=54.65 Aligned_cols=26 Identities=42% Similarity=0.691 Sum_probs=22.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|+|+|++|+|||||++.|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999774
No 270
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.09 E-value=0.023 Score=55.35 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=24.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 456778999999999999999999874
No 271
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.08 E-value=0.021 Score=53.72 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+|+|++|+|||||++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999965
No 272
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.99 E-value=0.024 Score=55.20 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=21.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALR 210 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~ 210 (581)
.++..|+|+|++|+|||||++.|.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 346799999999999999999998
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.93 E-value=0.019 Score=52.87 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=21.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++-.++++|++|+|||||++.+..
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc
Confidence 3566899999999999999998654
No 274
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.90 E-value=0.021 Score=53.94 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|+|+|++|+|||||.+.|...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999754
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.86 E-value=0.021 Score=52.00 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+..|+|+|++|+|||||.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999763
No 276
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.85 E-value=0.026 Score=57.43 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=24.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+++-.++|+|++|+|||||++.|.+-
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 467789999999999999999999764
No 277
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.82 E-value=0.024 Score=54.85 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.6
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 346678999999999999999999874
No 278
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.81 E-value=0.022 Score=54.96 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=18.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhh-cc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALR-QT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~-~~ 212 (581)
..++..++|+|++|+|||||++.|. +.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC--
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4567789999999999999999998 64
No 279
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.81 E-value=0.024 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
+.+-.++++|+.|+|||||++.|.+.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456679999999999999999998754
No 280
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.78 E-value=0.029 Score=54.74 Aligned_cols=28 Identities=43% Similarity=0.653 Sum_probs=24.3
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
..++-.++|+|+.|+|||||++.|.+-.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567789999999999999999998753
No 281
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.64 E-value=0.031 Score=55.40 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=24.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456778999999999999999999875
No 282
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.50 E-value=0.03 Score=54.36 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
.++-.++|+|+.|+|||||++.|.+-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998753
No 283
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.49 E-value=0.028 Score=51.41 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
+++..|+|+|++|+|||||.+.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456899999999999999999865
No 284
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.47 E-value=0.035 Score=54.99 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=24.1
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356779999999999999999999875
No 285
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.40 E-value=0.036 Score=55.02 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 456778999999999999999999875
No 286
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.39 E-value=0.031 Score=55.21 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=24.3
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
..++-.++|+|+.|+|||||++.|.+-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567789999999999999999998753
No 287
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.38 E-value=0.032 Score=54.65 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=23.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356678999999999999999999875
No 288
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.35 E-value=0.18 Score=46.97 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=26.9
Q ss_pred cEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCC
Q 008003 262 DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDK 301 (581)
Q Consensus 262 DivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl 301 (581)
+.-++++|=-....+.+.+.+..+...++++++.+...|-
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f 115 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTH 115 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeecccc
Confidence 4557777765544455666666555568888888887774
No 289
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.31 E-value=0.033 Score=54.75 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=23.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++-.++|+|+.|+|||||++.|.+-
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999875
No 290
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.30 E-value=0.039 Score=54.59 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 456778999999999999999999875
No 291
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.28 E-value=0.032 Score=56.88 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++..|+|+|++|+|||||++.|.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 456789999999999999999999764
No 292
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.27 E-value=0.033 Score=55.75 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 356778999999999999999999874
No 293
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.27 E-value=0.037 Score=55.02 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 356778999999999999999999874
No 294
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.25 E-value=0.04 Score=54.96 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=24.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356778999999999999999999875
No 295
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.23 E-value=0.035 Score=54.29 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=23.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346778999999999999999999875
No 296
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.23 E-value=0.034 Score=53.45 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=23.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++-.++|+|+.|+|||||++.|.+-
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45668999999999999999999875
No 297
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.17 E-value=0.035 Score=52.13 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+.+..|+|+|.+|+|||||.+.|...
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999653
No 298
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.16 E-value=0.041 Score=51.85 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.5
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++..|+|+|.+|+|||||.+.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 455678999999999999999999874
No 299
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.15 E-value=0.038 Score=49.80 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=18.9
Q ss_pred CEEEEEccCCCCcchHhhhh
Q 008003 190 PVVTVMGHVDHGKTSLLDAL 209 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L 209 (581)
+.|+|+|++|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 300
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.15 E-value=0.034 Score=52.29 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=22.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|+|+|++|+|||||.+.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998764
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.15 E-value=0.039 Score=52.77 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=22.6
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+-.++|+|+.|+|||||++.|.+-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999876
No 302
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.12 E-value=0.038 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++..|+|.|.+|+||||+.+.|..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999965
No 303
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.11 E-value=0.043 Score=54.58 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.2
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456778999999999999999999885
No 304
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.06 E-value=0.037 Score=54.13 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=21.2
Q ss_pred CEEEEEccCCCCcchHhhhhhcc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
-.++|+|+.|+|||||++.|.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999875
No 305
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.05 E-value=0.47 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+-.++|+|++|+|||||++.|.+-
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
No 306
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.05 E-value=0.043 Score=54.05 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=23.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++-.++|+|+.|+|||||++.|.+-
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 46678999999999999999999875
No 307
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.05 E-value=0.042 Score=52.36 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.0
Q ss_pred CCEEEEEccCCCCcchHhhhhhc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
+.+|+|+|++|+||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 308
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.04 E-value=0.045 Score=54.39 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.9
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456778999999999999999999875
No 309
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.03 E-value=0.043 Score=53.96 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.9
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346778999999999999999999885
No 310
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.99 E-value=0.036 Score=53.99 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.9
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++..|+|+|+.|+|||||++.|.+.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999763
No 311
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.88 E-value=0.039 Score=51.13 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.8
Q ss_pred CEEEEEccCCCCcchHhhhhhc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~ 211 (581)
..++|+|++|+|||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999975
No 312
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.86 E-value=0.046 Score=54.73 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.3
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
..++-.++|+|+.|+|||||++.|.+-.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3567789999999999999999998753
No 313
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.84 E-value=0.046 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+|+|++|+||||+...|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999964
No 314
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.84 E-value=0.039 Score=54.69 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..+-.++|+|++|+|||||++.|.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 45668999999999999999999764
No 315
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.80 E-value=0.047 Score=50.69 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.7
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+.++|+|++|+|||||+++|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999864
No 316
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.79 E-value=0.049 Score=53.74 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
.++-.++|+|+.|+|||||++.|.+-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466789999999999999999998753
No 317
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.79 E-value=0.044 Score=49.53 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.1
Q ss_pred CEEEEEccCCCCcchHhhhhhcc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..|+|+|.+|+||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999653
No 318
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.75 E-value=0.051 Score=50.78 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
++..|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999764
No 319
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.72 E-value=0.035 Score=51.08 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=22.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
++..++++|++|+|||||+.++.+.-
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999987643
No 320
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.70 E-value=0.054 Score=48.76 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhccc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
.+..++|+|++|+|||||++.+.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998743
No 321
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.69 E-value=0.041 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.4
Q ss_pred CEEEEEccCCCCcchHhhhhhcc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
-+++|+|++|+|||||++.|.+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 46899999999999999999764
No 322
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.67 E-value=0.044 Score=51.11 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=23.1
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+..++..|+|+|.+|+||||+.+.|...
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 4456778999999999999999999764
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.66 E-value=0.054 Score=50.23 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.3
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+++..|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345789999999999999999999764
No 324
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.62 E-value=0.046 Score=52.65 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.+++-.++|+|++|+|||||++.|..
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45778999999999999999999874
No 325
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.61 E-value=0.058 Score=49.25 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.+..|+++|.+|+||||+.+.|..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 326
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.61 E-value=0.046 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.241 Sum_probs=22.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
++..|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999753
No 327
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.54 E-value=0.044 Score=49.96 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=20.1
Q ss_pred CEEEEEccCCCCcchHhhhhhc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~ 211 (581)
..|+|+|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 328
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.52 E-value=0.057 Score=54.41 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=24.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 456778999999999999999999875
No 329
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.49 E-value=0.04 Score=56.05 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=24.1
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+.+-.++|+|+.|+|||||++.|.+-
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 467789999999999999999999874
No 330
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.48 E-value=0.05 Score=50.25 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=21.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++..|+++|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999965
No 331
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.45 E-value=0.079 Score=51.26 Aligned_cols=41 Identities=5% Similarity=-0.071 Sum_probs=27.3
Q ss_pred cEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 262 DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 262 DivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
+.-++++|--.-...+..+.+..+...++|+|+++-..|-.
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 34566777655444445556666556688999998888863
No 332
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.33 E-value=0.06 Score=49.85 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.1
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+|+|.+|+||||+...|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 333
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.30 E-value=0.062 Score=50.55 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|+|.|.+|+||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999999753
No 334
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.29 E-value=0.039 Score=52.43 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.5
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+++-.++|+|++|+|||||++.|.+.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456678999999999999999999874
No 335
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.25 E-value=0.05 Score=50.20 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++..|+|.|.+|+||||+...|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 336
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.23 E-value=0.046 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++..|+++|.+|+||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999964
No 337
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.22 E-value=0.056 Score=50.69 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=20.3
Q ss_pred CEEEEEccCCCCcchHhhhhhc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.+|+|+|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 338
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.21 E-value=0.058 Score=50.68 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=22.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|+|.|.+|+||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999753
No 339
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.18 E-value=0.055 Score=51.00 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+|+|++|+|||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 340
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.08 E-value=0.25 Score=48.33 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=45.7
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEE-EEEeCCCC
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV-VAINKCDK 301 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piI-vViNK~Dl 301 (581)
+.+.+.|+|||+.-.........+..+|.+|+|+..+..........+..+...+.+++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 45789999999854322121122235899999998876544455566666666788877 99999984
No 341
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.02 E-value=0.069 Score=52.35 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=22.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
+++..|+|+|++|+|||||++.|..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999973
No 342
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.00 E-value=0.061 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++..|+|.|..|+|||||++.|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 356778999999999999999999875
No 343
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.98 E-value=0.058 Score=54.67 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|+|+|++|+|||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999763
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.98 E-value=0.068 Score=50.90 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++..|+|+|.+|+||||+...|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999965
No 345
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.91 E-value=0.071 Score=52.89 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
.. +-.++|+|+.|+|||||++.|.+-.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 7789999999999999999998854
No 346
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.86 E-value=0.065 Score=49.84 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEEccCCCCcchHhhhhhc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~ 211 (581)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999975
No 347
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.85 E-value=0.07 Score=48.96 Aligned_cols=25 Identities=28% Similarity=0.289 Sum_probs=22.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
+++..|+|+|.+|+||||+...|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4567899999999999999999964
No 348
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.83 E-value=0.076 Score=55.27 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=24.2
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 467789999999999999999999874
No 349
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.80 E-value=0.073 Score=49.19 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+++..|+++|.+|+||||+...|...
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346778999999999999999998653
No 350
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.79 E-value=0.07 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=17.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++..|+|.|.+|+||||+...|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
No 351
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.77 E-value=0.072 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.+..|+++|.+|+||||+...|..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999964
No 352
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.74 E-value=0.17 Score=53.55 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=22.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..+..|+++|.||+||||+...|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999998763
No 353
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.73 E-value=0.079 Score=55.04 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 356778999999999999999999874
No 354
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.69 E-value=0.068 Score=50.98 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+|+|.+|+||||+...|..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999999965
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.60 E-value=0.083 Score=49.46 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.4
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
...+..|+|+|.+|+||||+...|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999865
No 356
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.60 E-value=0.083 Score=54.88 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 356778999999999999999999874
No 357
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.59 E-value=0.074 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.2
Q ss_pred CEEEEEccCCCCcchHhhhhhc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~ 211 (581)
..|+|+|++|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 358
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.56 E-value=0.038 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.8
Q ss_pred CEEEEEccCCCCcchHhhhhhcc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++|+|++|+|||||++.|.+-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 359
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.53 E-value=0.071 Score=49.05 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEccCCCCcchHhhhhhcc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.|+|.|.+|+||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 360
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.52 E-value=0.08 Score=50.71 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999975
No 361
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.52 E-value=0.07 Score=55.40 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=22.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+-.++|+|++|+|||||++.|.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999874
No 362
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.45 E-value=0.073 Score=48.87 Aligned_cols=26 Identities=31% Similarity=0.243 Sum_probs=22.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|+++|.+|+||||+.+.|...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999763
No 363
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.44 E-value=0.088 Score=54.75 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=23.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 356778999999999999999999874
No 364
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.39 E-value=0.074 Score=54.40 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+|+|++|+|||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999865
No 365
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.34 E-value=0.074 Score=53.53 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=22.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|+|+|++|+|||||++.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998653
No 366
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.31 E-value=0.088 Score=48.70 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+.+.++|+|.+|+|||||+.+|...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998753
No 367
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.28 E-value=0.093 Score=54.91 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 356778999999999999999999874
No 368
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.26 E-value=0.094 Score=54.75 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 356778999999999999999999774
No 369
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.21 E-value=0.092 Score=54.45 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++-.++|+|+.|+|||||++.|.+-
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 46778999999999999999999874
No 370
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.15 E-value=0.08 Score=56.88 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+.+++|+|+.|+|||||++.|.+-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 6788999999999999999999764
No 371
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.05 E-value=0.084 Score=51.45 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++.+|+|+|.||+||||+...|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999975
No 372
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.04 E-value=0.54 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
....+.|.|+||+|||||+.++...
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999764
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.02 E-value=0.093 Score=49.59 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEEccCCCCcchHhhhhhc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~ 211 (581)
+|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 374
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.02 E-value=0.093 Score=48.65 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.+..|+|+|.+|+||||+...|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999865
No 375
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.01 E-value=0.096 Score=50.42 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=22.9
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..+++..|.|+|+||+||+|+...|...
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456667889999999999999998753
No 376
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.87 E-value=0.1 Score=54.44 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++-.++|+|+.|+|||||++.|.+-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 46678999999999999999999874
No 377
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.86 E-value=0.084 Score=50.02 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.1
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+++-.++|+|++|+|||||+..|...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346678999999999999999999754
No 378
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.73 E-value=0.091 Score=54.83 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=22.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..+-.++|+|++|+|||||++.|.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34567999999999999999999864
No 379
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.72 E-value=0.1 Score=49.33 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=19.4
Q ss_pred EEEEEccCCCCcchHhhhhhc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~ 211 (581)
+|+|+|.||+||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 380
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.64 E-value=0.12 Score=48.30 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+|.|.+|+||||+...|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999864
No 381
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.63 E-value=0.077 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.9
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+-+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999774
No 382
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.61 E-value=0.092 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.2
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+-.++|+|++|+|||||++.|.+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 348999999999999999999764
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.58 E-value=0.098 Score=52.95 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.4
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
..++-.++++|+.|+|||||++.|.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999999854
No 384
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.54 E-value=0.12 Score=48.65 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.4
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.+++-.++|+|++|+|||||+..|..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999999987
No 385
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.53 E-value=0.12 Score=51.73 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=24.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
.+++-.++|+|++|+|||||+..|.+.-
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999987643
No 386
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.53 E-value=0.082 Score=54.68 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 356678999999999999999999874
No 387
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.51 E-value=0.091 Score=52.31 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=19.6
Q ss_pred EEEEccCCCCcchHhhhhhcc
Q 008003 192 VTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~ 212 (581)
++++|+||+|||||++++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
No 388
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.51 E-value=0.12 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 356789999999999999999999874
No 389
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.47 E-value=0.1 Score=56.80 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+..++|+|++|+|||||+++|.+-
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4667999999999999999999864
No 390
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.22 E-value=0.12 Score=49.07 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++..|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999965
No 391
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.19 E-value=0.11 Score=49.32 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++..|+|+|.||+||||+...|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999965
No 392
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.18 E-value=0.12 Score=51.94 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+++|+||+|||||...|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999965
No 393
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.18 E-value=0.12 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.5
Q ss_pred CCEEEEEccCCCCcchHhhhhhc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
+..|+|.|.+|+||||+...|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 394
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.12 E-value=0.13 Score=50.08 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=21.2
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.+++..|+|.|++|+||||+.+.|..
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999864
No 395
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.12 E-value=0.12 Score=49.97 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|+|.|.+|+||||+++.|...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999764
No 396
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.07 E-value=0.11 Score=47.67 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.8
Q ss_pred CEEEEEccCCCCcchHhhhhhc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~ 211 (581)
+.|+|+|.||+||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999865
No 397
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.04 E-value=0.12 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|+|+|.+|+||||+...|...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998653
No 398
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.01 E-value=0.078 Score=54.96 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=23.7
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 356778999999999999999999874
No 399
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.99 E-value=0.14 Score=46.37 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+..+.|.|++|+|||+|+..+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999998764
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.98 E-value=0.067 Score=50.35 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEEccCCCCcchHhhhhhcc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.|+|+|.+|+|||||++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.98 E-value=0.14 Score=49.22 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=22.7
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
...++..|+|+|.+|+||||+...|...
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3345678999999999999999999754
No 402
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.85 E-value=0.097 Score=51.26 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++..|+++|.||+||||+...|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999998653
No 403
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.75 E-value=0.12 Score=47.23 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEEccCCCCcchHhhhhhc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~ 211 (581)
+|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 404
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.74 E-value=0.13 Score=48.64 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=19.5
Q ss_pred EEEEEccCCCCcchHhhhhhc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~ 211 (581)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 405
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.73 E-value=0.13 Score=50.63 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=21.3
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++..|+++|.||+||||+...|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999875
No 406
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.69 E-value=0.11 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.3
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+.++|+|..|+|||||++.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 457899999999999999999864
No 407
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.66 E-value=0.14 Score=47.13 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.4
Q ss_pred EEEEEccCCCCcchHhhhhhc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~ 211 (581)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 408
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.50 E-value=0.15 Score=47.21 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEEccCCCCcchHhhhhhcc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.|+|.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 409
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.49 E-value=0.16 Score=56.20 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=24.1
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++|-.++|+|+.|+|||||++.|.+-
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999999875
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.46 E-value=0.13 Score=50.51 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.9
Q ss_pred CCEEEEEccCCCCcchHhhhhhc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
+..|+|+|.+|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 66899999999999999999865
No 411
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.46 E-value=0.13 Score=50.11 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEccCCCCcchHhhhhhcc
Q 008003 192 VTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~ 212 (581)
++|+|++|+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 412
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.43 E-value=0.16 Score=45.80 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEEccCCCCcchHhhhhhc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~ 211 (581)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 413
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.42 E-value=0.16 Score=53.03 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.1
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.+.+..++|+|++|+|||||++.|.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45667899999999999999999986
No 414
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.36 E-value=0.18 Score=55.99 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=24.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+++-.++|+|+.|+|||||++.|.+-
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 356789999999999999999999874
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.35 E-value=0.13 Score=49.24 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+++-.++|+|++|+|||||+..|...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456778999999999999999999874
No 416
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.24 E-value=0.13 Score=54.43 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
++-.++|+|++|+|||||++.|.+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4457999999999999999999764
No 417
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.20 E-value=0.17 Score=55.97 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=23.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+++-.++|+|+.|+|||||++.|.+-
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 56789999999999999999999875
No 418
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.20 E-value=0.14 Score=46.82 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.5
Q ss_pred CEEEEEccCCCCcchHhhhhhc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~ 211 (581)
...+|+|+.|+|||||+++|..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999853
No 419
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.06 E-value=0.16 Score=52.36 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=24.1
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-+++|+|+.|+|||||++.|.+.
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999999886
No 420
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.94 E-value=0.15 Score=52.86 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.4
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
..++-.++++|+.|+|||||++.|.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHh
Confidence 34567899999999999999999854
No 421
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.93 E-value=0.19 Score=55.12 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
...+-.++|+|+.|+|||||++.|.+.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 567889999999999999999999874
No 422
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.91 E-value=0.17 Score=55.98 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=23.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+++-.++|+|+.|+|||||++.|.+-
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 56789999999999999999999874
No 423
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.88 E-value=0.17 Score=48.20 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEEccCCCCcchHhhhhhcc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+|+|+|+|||||+|+...|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 424
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.79 E-value=0.2 Score=48.26 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=22.6
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
..++..|+|+|.+|+||||+...|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999875
No 425
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.67 E-value=0.19 Score=55.61 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=23.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
++|-.++|+|+.|+|||||++.|.+-
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56779999999999999999999874
No 426
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.64 E-value=0.17 Score=45.79 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.7
Q ss_pred CEEEEEccCCCCcchHhhhhhc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~ 211 (581)
..|+|.|.+|+||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 427
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.61 E-value=0.17 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.7
Q ss_pred CEEEEEccCCCCcchHhhhhhcc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999999999999774
No 428
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.54 E-value=0.19 Score=55.00 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.3
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 345668999999999999999999874
No 429
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.41 E-value=0.7 Score=46.65 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.7
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
...|.|.|++|+|||+|+.++...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999999653
No 430
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.35 E-value=0.21 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+..+.|.|++|+|||||+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998764
No 431
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.33 E-value=0.19 Score=48.06 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=19.4
Q ss_pred EEEEEccCCCCcchHhhhhhc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~ 211 (581)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 432
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.31 E-value=0.2 Score=49.92 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALR 210 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~ 210 (581)
.++..|+|.|.+|+||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456689999999999999999997
No 433
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.30 E-value=0.22 Score=55.43 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 456789999999999999999999774
No 434
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.27 E-value=0.19 Score=49.03 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.++..|+|.|.+|+||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999866
No 435
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.15 E-value=0.17 Score=49.97 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEccCCCCcchHhhhhhcc
Q 008003 192 VTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 192 V~IvG~~n~GKSSLln~L~~~ 212 (581)
++|+|++|+|||||++++.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999864
No 436
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.15 E-value=0.2 Score=53.39 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=24.2
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..++-+++|+|+.|+|||||++.|.+.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 456789999999999999999999875
No 437
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.13 E-value=0.21 Score=55.34 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=23.9
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+.+-.++|+|+.|+|||||++.|.+-
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356789999999999999999999874
No 438
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.05 E-value=0.18 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
...+.|.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999998664
No 439
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.99 E-value=0.21 Score=50.10 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=18.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
+++.|+|.|++|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999875
No 440
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.92 E-value=0.2 Score=49.12 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.1
Q ss_pred EEEEEccCCCCcchHhhhhhc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~ 211 (581)
.|+|+|++|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999965
No 441
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.74 E-value=0.25 Score=54.98 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=24.4
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
...+-.++|+|+.|+|||||++.|.+.
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 567889999999999999999999874
No 442
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.58 E-value=0.21 Score=48.97 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=22.6
Q ss_pred CCCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 185 ILPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 185 ~~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
...++..|+|.|.+|+||||+.+.|...
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999999764
No 443
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.54 E-value=0.22 Score=44.63 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.4
Q ss_pred CCEEEEEccCCCCcchHhhhhh
Q 008003 189 PPVVTVMGHVDHGKTSLLDALR 210 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~ 210 (581)
+...+|+|+.|+|||||++++.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4467899999999999999985
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.40 E-value=0.2 Score=49.57 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=23.5
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.+++-.++|+|++|+|||||+..|..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 56788999999999999999999876
No 445
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.20 E-value=0.26 Score=45.85 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.1
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+..+.|.|++|+|||+|+.++...
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998764
No 446
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.08 E-value=0.23 Score=53.61 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.2
Q ss_pred CEEEEEccCCCCcchHhhhhhc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~ 211 (581)
-.++|+|+.|+|||||++.|.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6799999999999999999965
No 447
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.05 E-value=0.29 Score=47.59 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.9
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+..+.+.|+||+|||||+.++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345999999999999999999763
No 448
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=87.03 E-value=0.68 Score=47.26 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
++..+.|.|+||+|||+|..++...
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4456789999999999999998764
No 449
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=87.03 E-value=1.3 Score=41.52 Aligned_cols=107 Identities=13% Similarity=0.044 Sum_probs=51.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc------cccccccCceeEeeeeEEEeecCCeEEE--EEeCCCcchhhHHHhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT------SLVAKEAGGITQHMGAFVVGMSTGASIT--FLDTPGHAAFSAMRKRGA 258 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~------~~~~~~~~g~T~d~~~~~~~~~~g~~i~--liDTpG~~~~~~~~~~~~ 258 (581)
.++...++.|+.|+||||.+-.+... ++..-. +..........+....|..+. .++.+ ........
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k-~~~d~r~~~~~i~s~~g~~~~a~~~~~~-----~~i~~~~~ 79 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK-PEIDNRYSKEDVVSHMGEKEQAVAIKNS-----REILKYFE 79 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-EC-------CEEECTTSCEEECEEESSS-----THHHHHCC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-eccCccchHHHHHhhcCCceeeEeeCCH-----HHHHHHHh
Confidence 34567899999999999887666432 111100 001011111112111232221 22221 12222111
Q ss_pred ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCC
Q 008003 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDK 301 (581)
Q Consensus 259 ~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl 301 (581)
...| ++++|=..-..+...+.+..+...++|+|+.+-+.|-
T Consensus 80 ~~~d--vViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~df 120 (191)
T 1xx6_A 80 EDTE--VIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDF 120 (191)
T ss_dssp TTCS--EEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBCT
T ss_pred ccCC--EEEEECCCCCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 2234 4455643333344466666655568888888888874
No 450
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.96 E-value=0.27 Score=44.40 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.0
Q ss_pred CCEEEEEccCCCCcchHhhhhhc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
--+|+|.|.+|+||||+...|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 451
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.81 E-value=1.7 Score=44.34 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=30.8
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcccccccccCceeEeeeeEEEeecCCeEEEEEeCCCc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~~~~~~~~~g~T~d~~~~~~~~~~g~~i~liDTpG~ 247 (581)
.+++ .+.|.|+||+|||||+-.+...-... . .+..+.++|+.+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~----------------g-~g~~vlyId~E~s 69 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQ----------------Y-PDAVCLFYDSEFG 69 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHH----------------C-TTCEEEEEESSCC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhc----------------C-CCceEEEEeccch
Confidence 3556 78999999999999987775432210 0 2456778888874
No 452
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.73 E-value=1 Score=46.55 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+++-.+.|.|+||+|||||+..+...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456678999999999999999998753
No 453
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.73 E-value=0.28 Score=45.60 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEEccCCCCcchHhhhhhc
Q 008003 191 VVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~~ 211 (581)
.|+|.|.+|+||||+...|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999865
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.26 E-value=0.29 Score=53.65 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
+++-.++|+|+.|+|||||++.|.+-.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998753
No 455
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.08 E-value=1.3 Score=45.49 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+++-.+.|.|+||+|||||+..+...
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999999999888653
No 456
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.02 E-value=1.2 Score=42.70 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=50.5
Q ss_pred CCCCEEEEEccCCCCcch-Hhhhhhcc-----cccccccCceeEeeeeEEEeecCCe--EEEEEeCCCcchhhHHHhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTS-LLDALRQT-----SLVAKEAGGITQHMGAFVVGMSTGA--SITFLDTPGHAAFSAMRKRGA 258 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSS-Lln~L~~~-----~~~~~~~~g~T~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~ 258 (581)
.++...++.|+.|+|||| |+.++.+- +...- .+..........+....|. +-..++.+ .++ .....
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~-kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~--~di---~~~i~ 99 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVF-KPAIDDRYHKEKVVSHNGNAIEAINISKA--SEI---MTHDL 99 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE-EEC-----------CBTTBCCEEEEESSG--GGG---GGSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE-EeccCCcchhhhHHHhcCCceeeEEeCCH--HHH---HHHHh
Confidence 346778999999999999 55555321 11100 0001001111111111222 22223322 111 11111
Q ss_pred ccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEEEEEeCCCCC
Q 008003 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (581)
Q Consensus 259 ~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piIvViNK~Dl~ 302 (581)
...| ++.+|=..=...+..+.+..+...++|+|+.+=..|-.
T Consensus 100 ~~~d--vV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~DF~ 141 (219)
T 3e2i_A 100 TNVD--VIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFR 141 (219)
T ss_dssp TTCS--EEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBCTT
T ss_pred cCCC--EEEEechhcCCHHHHHHHHHHHHCCCEEEEeecccccc
Confidence 2344 55566544333344555555556899999999988863
No 457
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.99 E-value=0.28 Score=53.74 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.8
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
+++-.++|+|+.|+|||||++.|.+-.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357789999999999999999998853
No 458
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.93 E-value=0.33 Score=46.91 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=20.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|+|.|.+|+||||+++.|...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999753
No 459
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.85 E-value=0.29 Score=47.16 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=21.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
++..|+|.|.+|+||||+++.|...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999754
No 460
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.82 E-value=0.3 Score=46.67 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.9
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
.+++-.++|+|+||+|||||+..+..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999887754
No 461
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.79 E-value=0.29 Score=50.78 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=18.4
Q ss_pred EEEEEccCCCCcchHhhhhh
Q 008003 191 VVTVMGHVDHGKTSLLDALR 210 (581)
Q Consensus 191 ~V~IvG~~n~GKSSLln~L~ 210 (581)
..+|+|+.|+|||||+++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67799999999999999986
No 462
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=85.74 E-value=0.8 Score=45.30 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=45.8
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEE-EEEeCCCCC
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV-VAINKCDKP 302 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piI-vViNK~Dl~ 302 (581)
+.+.|+|||+.-.... ....+..+|.+|+|+.............+..+...+.+++ +|+|+.|..
T Consensus 192 yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 5799999998543221 1123357899999999877555566666677777777766 899999863
No 463
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.72 E-value=0.32 Score=45.07 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.1
Q ss_pred CEEEEEccCCCCcchHhhhhhcc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..+.|.|++|+|||+|+..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999998754
No 464
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.69 E-value=0.38 Score=47.35 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.6
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+..+.|.|+||+|||+|+.++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999654
No 465
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.60 E-value=1.1 Score=44.85 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.7
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+..|.|.|++|+|||+|+.++...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998653
No 466
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.39 E-value=0.32 Score=46.46 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=20.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++...+.+.|+||+||||+..+|.+
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHH
Confidence 3445699999999999999888865
No 467
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.36 E-value=0.32 Score=45.88 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=20.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++..|+|+|.+|+||||+...|..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998865
No 468
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.29 E-value=0.36 Score=58.54 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=23.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+.+-+|+|+|++|+|||||++.|.+-
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 56779999999999999999999763
No 469
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.27 E-value=0.32 Score=48.40 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=20.1
Q ss_pred CEEEEEccCCCCcchHhhhhhc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~ 211 (581)
..|+|+|.||+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 470
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=85.23 E-value=4.5 Score=44.65 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=67.8
Q ss_pred CCcceEEE--EEEeecCCCcEEEEEEeccEEeeCcEEEE--ccccceEEEEEcccCCcccccCCCCcEEE--ecc---CC
Q 008003 362 GPAQAYVV--EARLDKGRGPLTTAIVKAGTLVCGQHVVV--GHEWGRIRAIRDMVGKSTDKARPAMPVEI--EGL---KG 432 (581)
Q Consensus 362 ~~~~~~V~--e~~~~~~~G~v~~~~V~~GtLk~gd~i~~--g~~~~kVk~i~~~~g~~v~~a~~~~~v~i--~gl---~~ 432 (581)
.|....|. .++.... |.++.+.|..|+++.|..+.+ |...|+|.+|.. ..+.++++..|.-+.| .++ .+
T Consensus 462 ~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~~~~~~~g~i~sl~~-~k~~v~~~~~g~e~gi~~~~~~~~~~ 539 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMNDDGETVGTVESMQD-KGENLKSASRGQKVAMAIKDAVYGKT 539 (594)
T ss_dssp CCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEECTTSCEEEEEEEEEE-TTEEESEEETTCCEEEEEETCCBTTT
T ss_pred eeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEecCCcEEEEEehhcc-cCccccccCCCCEEEEEEeCcccCCC
Confidence 34444444 4555544 899999999999999999887 334689999975 7788999999988855 454 33
Q ss_pred CCCCCCeEEEeCCHHHHHHHHH
Q 008003 433 LPMAGDDIIVVDSEERARMLSS 454 (581)
Q Consensus 433 ~~~~Gd~~~~v~~~~~a~~~~~ 454 (581)
. ..||.+.....+..++.+-+
T Consensus 540 ~-~~~d~~~~~~~~~~~~~l~~ 560 (594)
T 1g7s_A 540 I-HEGDTLYVDIPENHYHILKE 560 (594)
T ss_dssp B-CTTCEEEECCCHHHHHTTTS
T ss_pred C-CCCCEEEEEEEhHHHHHHHH
Confidence 3 58999999999888877653
No 471
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.20 E-value=0.42 Score=46.16 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..+..|.+.|+||+|||+|+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999763
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.17 E-value=0.34 Score=53.82 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.6
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhccc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
.++-.++|+|+.|+|||||++.|.+-.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998853
No 473
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.09 E-value=0.38 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.2
Q ss_pred CEEEEEccCCCCcchHhhhhhcc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..+.|.|++|+|||||+..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
No 474
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.07 E-value=0.35 Score=46.24 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.9
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
+++..|+|.|.+|+||||+++.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4678899999999999999999865
No 475
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.79 E-value=0.42 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=22.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+..|+|+|++|+|||||...|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999764
No 476
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.71 E-value=0.43 Score=47.34 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+..+.+.|+||+|||+|+.++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999763
No 477
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.67 E-value=0.44 Score=47.64 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=21.2
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+.+.-+.+.|+||+|||+|..++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456778899999999999999764
No 478
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=84.60 E-value=1.7 Score=43.60 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=46.7
Q ss_pred eEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhHHHHHHHHhhcCCCEE-EEEeCCCCC
Q 008003 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV-VAINKCDKP 302 (581)
Q Consensus 237 ~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~~~~i~~~~~~~~piI-vViNK~Dl~ 302 (581)
+.+.|+|||+.-..... ......+|.+|+|+.............+..+...+.+++ +|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~d~-~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTHH-HHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHHH-HHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 57999999985432211 123467899999999887666667777777777777644 788999864
No 479
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.60 E-value=0.4 Score=44.98 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=21.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
....|+|+|.+|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999998753
No 480
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.58 E-value=0.36 Score=49.06 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.2
Q ss_pred CEEEEEccCCCCcchHhhhhhcc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+.+.|.|++|+|||||+..|.+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 44999999999999999998763
No 481
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.53 E-value=0.46 Score=47.62 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+..|.+.|+||+|||+|+.++.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 4567999999999999999999763
No 482
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.37 E-value=0.39 Score=48.94 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+..++|.|++|+|||||++.+.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998764
No 483
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.30 E-value=0.39 Score=48.84 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+++.|+|+|++++|||||...|...
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHh
Confidence 3567899999999999999999753
No 484
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.12 E-value=0.31 Score=50.27 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 186 ~~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+++-.+.|+|++|+|||||+..|...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467788999999999999999999865
No 485
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.11 E-value=0.43 Score=48.92 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.7
Q ss_pred CEEEEEccCCCCcchHhhhhhcc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+.+.|.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998764
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=83.94 E-value=0.48 Score=52.60 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.3
Q ss_pred CEEEEEccCCCCcchHhhhhhccc
Q 008003 190 PVVTVMGHVDHGKTSLLDALRQTS 213 (581)
Q Consensus 190 ~~V~IvG~~n~GKSSLln~L~~~~ 213 (581)
-.++|+|+.|+|||||++.|.+-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999998753
No 487
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=83.92 E-value=0.48 Score=46.08 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+++..|+|.|.+|+||||+++.|...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998753
No 488
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=83.79 E-value=0.22 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.3
Q ss_pred CCCCEEEEEccCCCCcchHhhhhh
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALR 210 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~ 210 (581)
..+ .++|+|+.|+|||||+++|.
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHH
Confidence 455 99999999999999999883
No 489
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=83.63 E-value=2.2 Score=35.53 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=59.8
Q ss_pred ceEEEEEEeecCCCcEEEEEEeccEEeeCcEEEEcc-----ccceEEEEEcccCCcccccCCCCcEEE--eccCCCCCCC
Q 008003 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH-----EWGRIRAIRDMVGKSTDKARPAMPVEI--EGLKGLPMAG 437 (581)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~GtLk~gd~i~~g~-----~~~kVk~i~~~~g~~v~~a~~~~~v~i--~gl~~~~~~G 437 (581)
.+.|.+++..+..|.++-+.|.+|.++.+..+.+-. ..|++.+|.. ....++++..|.-+-| .++++. ..|
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr-~KddV~EV~~G~ECGi~l~~~~di-k~G 85 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKR-YKDDVREVAQGYECGLTIKNFNDI-KEG 85 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEEC-SSSCCSCCBTTCEEEEECTTCSSC-SSC
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcc-cccccceECCCcEEEEEEcCcCCC-CCC
Confidence 355667777788899999999999999999988732 2468888874 5678999999988765 356655 688
Q ss_pred CeEEEeC
Q 008003 438 DDIIVVD 444 (581)
Q Consensus 438 d~~~~v~ 444 (581)
|.+-...
T Consensus 86 D~Ie~ye 92 (99)
T 1d1n_A 86 DVIEAYV 92 (99)
T ss_dssp SEEEEEC
T ss_pred CEEEEEE
Confidence 9886554
No 490
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.60 E-value=0.51 Score=46.91 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=21.7
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
..+..+.|.|+||+|||+|..++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999887653
No 491
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.55 E-value=0.51 Score=45.07 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCCEEEEEccCCCCcchHhhhhhc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~ 211 (581)
++.-|+|.|.+|+||||+++.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999999865
No 492
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.52 E-value=0.49 Score=48.53 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.7
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
++..|+|+|++|+|||||...|...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999999764
No 493
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.40 E-value=0.49 Score=57.43 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.5
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
+++-.++|+|++|+|||||++.|.+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccc
Confidence 56789999999999999999999764
No 494
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.20 E-value=0.44 Score=48.04 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+..+.|.|+||+|||||+.++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999998764
No 495
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=83.11 E-value=0.54 Score=41.52 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=21.2
Q ss_pred CCCEEEEEccCCCCcchHhhhhhcc
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.+..|.|.|++|+|||+|..++...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999998654
No 496
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=83.09 E-value=1.3 Score=42.95 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCCcchhhHHHhhccccccEEEEEEeccCCCChhH---HHHHHHHhh---cCCCEE-EEEeCCCCC
Q 008003 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQT---LEAIAHANA---ANVPIV-VAINKCDKP 302 (581)
Q Consensus 235 ~g~~i~liDTpG~~~~~~~~~~~~~~aDivllVvDa~~g~~~~~---~~~i~~~~~---~~~piI-vViNK~Dl~ 302 (581)
..+.+.++|||+.-.. .....+..+|.+|+++..+....... .+.+..+.. .+.+++ +|+|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 3578999999985332 22344567999999998765222222 223333221 355664 899999864
No 497
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.06 E-value=0.28 Score=53.87 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|+|+|.+|+|||||++.|.+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 46678999999999999999999764
No 498
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=82.98 E-value=0.59 Score=44.80 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCCCEEEEEccCCCCcchHhhhhhcc
Q 008003 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 187 ~~~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
.++..|++.|.+|+||||+++.|...
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999763
No 499
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.95 E-value=0.52 Score=41.56 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=20.7
Q ss_pred CCEEEEEccCCCCcchHhhhhhcc
Q 008003 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (581)
Q Consensus 189 ~~~V~IvG~~n~GKSSLln~L~~~ 212 (581)
...|.|.|++|+|||+|..++...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 345999999999999999998764
No 500
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=82.85 E-value=0.49 Score=44.64 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=19.9
Q ss_pred CCCEEEEEccCCCCcchHhhhhh
Q 008003 188 RPPVVTVMGHVDHGKTSLLDALR 210 (581)
Q Consensus 188 ~~~~V~IvG~~n~GKSSLln~L~ 210 (581)
.+...+|+|+.|+|||||++++.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 34578899999999999999984
Done!