Query 008004
Match_columns 581
No_of_seqs 259 out of 547
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 15:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nsj_A Perforin-1; pore formin 100.0 4.9E-40 1.7E-44 363.4 15.2 312 12-358 17-380 (540)
2 3ojy_B Complement component C8 100.0 2E-39 6.7E-44 358.7 17.1 306 14-357 117-474 (537)
3 3ojy_A Complement component C8 100.0 2.1E-38 7.3E-43 351.2 18.9 314 13-356 117-491 (554)
4 3t5o_A Complement component C6 100.0 5E-38 1.7E-42 366.4 15.5 311 12-356 166-524 (913)
5 2rd7_A Complement component C8 100.0 1.2E-36 4.2E-41 322.1 18.4 280 12-317 21-367 (367)
6 2qp2_A Unknown protein; toxin, 100.0 4.8E-38 1.6E-42 345.0 7.2 328 10-391 37-426 (511)
7 3kk7_A Putative cell invasion 99.5 2.8E-15 9.5E-20 161.0 -1.5 276 10-317 48-368 (541)
8 2i46_A Adrenocortical dysplasi 25.0 49 0.0017 30.1 3.3 39 532-574 24-66 (161)
9 4fxv_A ELAV-like protein 1; RN 18.5 66 0.0023 26.4 2.7 52 150-208 23-81 (99)
10 1x4c_A Splicing factor, argini 18.2 2.1E+02 0.0072 23.3 5.8 56 150-213 19-75 (108)
No 1
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=100.00 E-value=4.9e-40 Score=363.40 Aligned_cols=312 Identities=15% Similarity=0.191 Sum_probs=221.2
Q ss_pred HHHhhhcccceeecc-cccc------cccCCCCCCce--EEecCccce-eeeecCCeeecCCCCc-ccccccccceeecc
Q 008004 12 ANSVQALGRGFDVNF-DTRL------LYCKGVAGSRV--VEVDEEHKK-DLFLYDEIVVPNVSRD-IKNSQESIGRQSSG 80 (581)
Q Consensus 12 ~~ai~~lG~GyDlt~-D~rl------~~ck~~~gsrl--i~id~~~~r-~l~~P~g~~v~~v~~~-ikc~kger~r~~Sd 80 (581)
.++++.+|.||||+. +.|- +|..+. ++.+ +. +.+... -+-+|..+.. .... ++|+...+..++++
T Consensus 17 ~Pg~~l~G~G~nilt~e~~g~~VlD~~~~~~~-~G~C~~c~-~~~~~~~~~RlP~nv~~--~~~~~~~~~~~~s~e~y~s 92 (540)
T 3nsj_A 17 VPGVWMAGEGMDVTTLRRSGSFPVNTQRFLRP-DRTCTLCK-NSLMRDATQRLPVAITH--WRPHSSHCQRNVAAAKVHS 92 (540)
T ss_dssp CTTGGGTTCEEETTTTEECSCCSBCCCCCSCT-TSCEEEEE-ETTTTTEEEEECTTEEE--EEECCSCCCCCCEEEEECS
T ss_pred CCChHHhcCCEEEecCcccCCEeEechhccCC-CCeeeEec-ccccCCceeeccceeee--EEEEEeeeeeeechhhccc
Confidence 467999999999986 3322 355421 1233 22 232222 2568987532 2234 78999888888888
Q ss_pred ccchhh-HHHHhhcceeeecCcCC---ceEEEEEeeccchhhccccce------eeEEeeeEEEEEEEEEcCCCCCchhH
Q 008004 81 VCTYPQ-MVEYFNEKANLSGGFPL---GSFNAAFSFTASKHIDAAATK------TLSMDGFYIPLAKVELKSPLVLQENV 150 (581)
Q Consensus 81 v~sf~q-mse~fn~~~slsg~ip~---g~fna~f~~s~S~~~~~astK------sl~~~~~~i~ly~f~L~~~l~Ls~eF 150 (581)
..++-+ +......+++++.+|+. ..+++++++++|....++.+| .|......|++|+|+|+.+++|+++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~s~s~~~~~a~~~s~~~~~~F~~~~~~~~~~~~~~~~~~~L~~~F 172 (540)
T 3nsj_A 93 TEGVAREAAANINNDWRVGLDVNPRPEANMRASVAGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSFRLVQKPPLHLDF 172 (540)
T ss_dssp HHHHHHHHHTTBCSCTTTTSCCC-CCSTTTTCBCTTTTSHHHHHHHHHHHHSCEEEEEEEEEEEEEEEEECSSCCBCHHH
T ss_pred HHHHHHHHhhhcccccceeeecccccccceeEEeecccchhhHHHHHhhhccceEEEEEEEEEEEEEEEeCCCCCCCHHH
Confidence 666522 22222233444555543 123355555666665554433 27777789999999996689999999
Q ss_pred Hh---hCCCCCCh---hHHHHHHhccccEEEEEEEEccE-EEE-EEEe--eecCCCCHHHHHHHHhhccceeEec-cccc
Q 008004 151 KR---AIPASWDP---PSLASFIENFGTHVITSVTIGGK-DVI-YVKQ--HQSSPLSTMEIKTYVQDVGNQRFSD-KDSL 219 (581)
Q Consensus 151 ~k---aLP~~yd~---~~Y~~FIe~YGTHyitsvtLGGk-dvi-~Vkq--~~sS~lt~~evk~cLs~~a~~~f~~-~~~~ 219 (581)
++ +||..||+ ++|++||++||||||++++|||+ +++ ++++ ++.+++|.+|+++||+.++++++.. +.+.
T Consensus 173 ~~~l~~LP~~~~~~~~~~Y~~fi~~yGTHyi~s~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~Cl~~e~~~~~~~~~~~~ 252 (540)
T 3nsj_A 173 KKALRALPRNFNSSTEHAYHELISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVEAQVSIGAQASVS 252 (540)
T ss_dssp HHHHHTSCSSCCSSTHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHTTCCHHHHHHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHhcccccCcccHHHHHHHHHhcCcEEEEeeeccceEEEEEEEehHhHhhcCCCHHHHHHHHhhcccEEEEEeEeec
Confidence 98 58999999 99999999999999999999999 554 5555 4678999999999999877655531 1222
Q ss_pred cccccccccc---CCCCCCcccCCccCCCCCCCCcccCCcCeEEEEEeecCCcc------------hhhHHHHHHhcccC
Q 008004 220 TSSGQLKLKD---KGLDPGLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDL------------EQNHRQWARTVRSS 284 (581)
Q Consensus 220 ~s~~~~~~~e---k~k~~~sf~~q~~~~r~~~~s~~s~~ed~~VI~~vrGG~~~------------~~~~~~Wl~SV~~~ 284 (581)
.+ ...|.+ +.+... +...++++ ++..++||.+. ++.|++|++||+++
T Consensus 253 ~~--~~~C~~~~~~~~~~~--------------~~~~~~~~--~~~~V~GG~~~~~~~L~~~~~~~p~~~~~W~~Sv~~~ 314 (540)
T 3nsj_A 253 SE--YKACEEKKKQHKMAT--------------SFHQTYRE--RHVEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSN 314 (540)
T ss_dssp HH--HHHHHHHHHHTTCSS--------------CHHHHCCC--EEEEEESSCGGGCCCSSSCSSCCHHHHHHHHHHTTTS
T ss_pred cc--ccccccccccccccC--------------Ccccccce--EEEEEeCCCccchhhhhcccCCCHHHHHHHHHHHhhC
Confidence 11 222332 111112 22234456 67788999852 46899999999999
Q ss_pred CceeeeeeeehhhhcCC-chhHHHHHHHHHHHHHcCCCHHHHHHHhhhcccc-cee-eccCCCC--CCcccCCCCCcee
Q 008004 285 PDVIEMTFFPITALLDG-ITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPR-VWA-PVQTKIP--GQQRKEPVCPSLQ 358 (581)
Q Consensus 285 P~vI~~kL~PI~eLL~~-~p~k~~Lk~AI~~YL~yKP~ieeL~~flefq~p~-~wa-Pc~n~lp--g~~r~~~~~pslq 358 (581)
|+||+|+|.|||+||+. .++|+|||+||++||. +++|| +|+ ||+||.+ ..+.|.|+||.-.
T Consensus 315 P~~I~~~l~PI~~Lv~~~~~kr~nLk~Ai~~Yl~-------------e~~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~ 380 (540)
T 3nsj_A 315 PGLVDYSLEPLHTLLEEQNPKREALRQAISHYIM-------------SRARWQNCSRPCRSGQHKSSHDSCQCECQDSK 380 (540)
T ss_dssp CEEEEEEEEEGGGGSCTTCTHHHHHHHHHHHHHH-------------HTCBCCCTTSCCBTTEEECSSCTTCEEESCTT
T ss_pred CceEEEEEEEHHHhcCCcHHHHHHHHHHHHHHHH-------------hcCchhhhcccccCCCccCCCCceEeeCCCCC
Confidence 99999999999999984 7889999999999999 89999 997 9999965 5588999998753
No 2
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=358.67 Aligned_cols=306 Identities=15% Similarity=0.178 Sum_probs=210.9
Q ss_pred Hhhhcccceeecc--------cccc--cccCCCCCCceEEecCccceeeeecCCeeecCCCCcccccccccceeeccccc
Q 008004 14 SVQALGRGFDVNF--------DTRL--LYCKGVAGSRVVEVDEEHKKDLFLYDEIVVPNVSRDIKNSQESIGRQSSGVCT 83 (581)
Q Consensus 14 ai~~lG~GyDlt~--------D~rl--~~ck~~~gsrli~id~~~~r~l~~P~g~~v~~v~~~ikc~kger~r~~Sdv~s 83 (581)
+++.+|.||||+. |.++ ..|+. +.... .+ +-+|..+.. ....++|+......++++..+
T Consensus 117 ~~~l~G~G~dilt~~~~g~vlD~~~~~G~C~~------~~~~~--~~-yRlP~nv~~--~~~~~~~~~~~sse~y~S~~~ 185 (537)
T 3ojy_B 117 GIGSLASGINLFTNSFEGPVLDHRYYAGGCSP------HYILN--TR-FRKPYNVES--YTPQTQGKYEFILKEYESYSD 185 (537)
T ss_dssp TGGGGGEEECTTTCCEEEECBCTTCCCSCCEE------EEETT--EE-EEECTTEEE--EEECCCCCCCEEEEEESSHHH
T ss_pred cceecceeEEEecCccccceecccccCCccce------eecCC--cc-EECccccee--EeeeeeEeeecchhhhhcHHH
Confidence 6788999999996 4433 45552 22121 23 789998643 224478999888888877666
Q ss_pred hhhHH---HHhhcceeeecCcCCceEEEEEeeccchhhccc-------ccee-eEEeeeEEEEEEEEE-cCCCCCchhHH
Q 008004 84 YPQMV---EYFNEKANLSGGFPLGSFNAAFSFTASKHIDAA-------ATKT-LSMDGFYIPLAKVEL-KSPLVLQENVK 151 (581)
Q Consensus 84 f~qms---e~fn~~~slsg~ip~g~fna~f~~s~S~~~~~a-------stKs-l~~~~~~i~ly~f~L-~~~l~Ls~eF~ 151 (581)
|.+.. ...+.+++++++|+. .|+++|++++++..++. ..++ |......|++|+|+| +.+++|+++|+
T Consensus 186 ~~~~~~~~~s~~~~~~~gl~i~~-~~~~~~~~s~s~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~L~~~F~ 264 (537)
T 3ojy_B 186 FERNVTEKMASKSGFSFGFKIPG-IFELGISSQSDRGKHYIRRTKRFSHTKSVFLHARSDLEVAHYKLKPRSLMLHYEFL 264 (537)
T ss_dssp HTTTSCC-----CCCBTTTBCCS-CEECCCTTTSSSSHHHHHHHHTTCSCCEEEEEEEECEEEEEEEECSSSCCBCHHHH
T ss_pred HHHHhhhhccccccceeeeeccc-ceeEeEeecccchHHHHHHHHHhhccceEEEEEEEEEEEEEEEEeCCCCCCCHHHH
Confidence 53322 233444556666654 57777777666543332 2222 666666999999999 88999999999
Q ss_pred hh---CCCCCChhHHHHHHhccccEEEEEEEEccE-EEEEEEe---eecCCCCHHHHHHHHhhccceeEe--cccccccc
Q 008004 152 RA---IPASWDPPSLASFIENFGTHVITSVTIGGK-DVIYVKQ---HQSSPLSTMEIKTYVQDVGNQRFS--DKDSLTSS 222 (581)
Q Consensus 152 ka---LP~~yd~~~Y~~FIe~YGTHyitsvtLGGk-dvi~Vkq---~~sS~lt~~evk~cLs~~a~~~f~--~~~~~~s~ 222 (581)
++ ||..||+++|++||++||||||++++|||+ +++++.. ++.+++|.+||++||+.+++++|. +.....+.
T Consensus 265 ~~l~~LP~~y~~~~y~~fi~~yGTH~i~s~~lGG~~~~i~~~~~~~~~~s~~t~~evk~Cl~~~~~~~~~i~~~~~~~~~ 344 (537)
T 3ojy_B 265 QRVKRLPLEYSYGEYRDLFRDFGTHYITEAVLGGIYEYTLVMNKEAMERGDYTLNNVHACAKNDFKIGGAIEEVYVSLGV 344 (537)
T ss_dssp HHHTTCCSSCCHHHHHHHHHHHCSEEEEEEEEEECCEEEEEEEHHHHTTTTCCHHHHHHHTTTC----------------
T ss_pred HHHHhcccccCHHHHHHHHHhcCcEEEEeEeeccEEEEEEEEehHhHhhcCCCHHHHHHHHhcccceeEEeeeeeeeccc
Confidence 85 699999999999999999999999999999 7666543 578899999999999988885552 11111121
Q ss_pred cccccccCCCCCCcccCCccCCCCCCCCcccCCcCeEEEEEeecCCcc------------hhhHHHHHHhcccCCceeee
Q 008004 223 GQLKLKDKGLDPGLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDL------------EQNHRQWARTVRSSPDVIEM 290 (581)
Q Consensus 223 ~~~~~~ek~k~~~sf~~q~~~~r~~~~s~~s~~ed~~VI~~vrGG~~~------------~~~~~~Wl~SV~~~P~vI~~ 290 (581)
....|.+..+ ... .+.+...+. .+++..++||++. .+.|++|++||+++|+||+|
T Consensus 345 ~~~~C~~~~~----~~~-------~~~~~~~~~--~~~~~~V~GG~~~~~~~L~~~~~~~~~~~~~W~~Sv~~~P~vI~~ 411 (537)
T 3ojy_B 345 SVGKCRGILN----EIK-------DRNKRDTMV--EDLVVLVRGGASEHITTLAYQELPTADLMQEWGDAVQYNPAIIKV 411 (537)
T ss_dssp CCSCCTTTTT----HHH-------HTTTSSCSE--EEEEEECCSCCSTTCCCCCTSSSCCCSCHHHHHHHHHTSCEEEEE
T ss_pred cccccccccc----ccc-------ccccccccc--eeEEEEEeCCCcccchhhhcccCCCHHHHHHHHHHhhcCCceEEE
Confidence 2222332111 000 000111222 3478899999862 46899999999999999999
Q ss_pred eeeehhhhcC--Cc----hhHHHHHHHHHHHHHcCCCHHHHHHHhhhccccceeeccCC-CC--CCcccCCCCCce
Q 008004 291 TFFPITALLD--GI----TGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTK-IP--GQQRKEPVCPSL 357 (581)
Q Consensus 291 kL~PI~eLL~--~~----p~k~~Lk~AI~~YL~yKP~ieeL~~flefq~p~~waPc~n~-lp--g~~r~~~~~psl 357 (581)
+|.|||+||+ ++ ++|+||++||++||. ++.||+|+||+|+ .| -.+.+.+.|+.-
T Consensus 412 ~l~PI~eLv~~~~ip~~~~kr~nL~~Ai~~Yl~-------------e~~~c~C~pC~~~~~~~~~gt~C~c~C~~g 474 (537)
T 3ojy_B 412 KVEPLYELVTATDFAYSSTVRQNMKQALEEFQK-------------EVSSCHCAPCQGNGVPVLKGSRCDCICPVG 474 (537)
T ss_dssp EEEEGGGGCCTTTCTTHHHHHHHHHHHHHHHHH-------------HTCGGGSCCCSTTCEEEEETTEEEEECCTT
T ss_pred EeEeHHHhcCcccCCchHHHHHHHHHHHHHHHH-------------HhCcccCCCCCcCCEEecCCCceeccCCCC
Confidence 9999999994 34 458999999999999 8999999999999 45 336677777654
No 3
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=351.24 Aligned_cols=314 Identities=19% Similarity=0.206 Sum_probs=197.6
Q ss_pred HHhhhcccceeecc--------cccc--cccCCC-CC-CceEEecC-----cc--c-eeeeecCCeeecCCCCccccccc
Q 008004 13 NSVQALGRGFDVNF--------DTRL--LYCKGV-AG-SRVVEVDE-----EH--K-KDLFLYDEIVVPNVSRDIKNSQE 72 (581)
Q Consensus 13 ~ai~~lG~GyDlt~--------D~rl--~~ck~~-~g-srli~id~-----~~--~-r~l~~P~g~~v~~v~~~ikc~kg 72 (581)
++++.+|.||||+. |.++ ..|... .| -|..-+|+ +. . +-+-+|..+.. ....++|+..
T Consensus 117 Pg~~l~g~G~nilt~~~~g~vld~~~~~G~C~~v~~~~~~~~~~~~~c~~~~~~~~~~~~RlP~nv~~--~~~~~~~~~~ 194 (554)
T 3ojy_A 117 PGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDDEKYFRKPYNFLK--YHFEALADTG 194 (554)
T ss_dssp TTHHHHTEEEETTTTEEEEESBCTTCCTTCCEEEECTTTTSCEEEGGGTEEECCGGGSEEEECTTEEE--EEECCCCCCC
T ss_pred CcccccccCEEeccCccccccccccccCCeeeEeecCcccccccccccccccccCCCeeEEccceeeE--EeEEEEEeee
Confidence 57889999999996 3332 334311 00 01111121 11 1 23568887532 2245789998
Q ss_pred ccceeeccccchhh-HHHHhhcceeeecCcCC--ceEEEEEeeccchhhcccc-------ce-eeEEeeeEEEEEEEEE-
Q 008004 73 SIGRQSSGVCTYPQ-MVEYFNEKANLSGGFPL--GSFNAAFSFTASKHIDAAA-------TK-TLSMDGFYIPLAKVEL- 140 (581)
Q Consensus 73 er~r~~Sdv~sf~q-mse~fn~~~slsg~ip~--g~fna~f~~s~S~~~~~as-------tK-sl~~~~~~i~ly~f~L- 140 (581)
....++++..+|.+ +.+.....++++.+|+. ..+.++++++++....++. .+ +|......|++|+|+|
T Consensus 195 ~s~e~y~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~k~~~F~~~~~~~~~~~f~l~ 274 (554)
T 3ojy_A 195 ISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHFKMR 274 (554)
T ss_dssp CEEEEESSHHHHHHHHC--------------------------------CTTGGGTTCCSTTEEEEEEEEEEEEEEEEEC
T ss_pred cchhhhhcHHHHHHHHHhhhccccceeeecccccceeEEEeeccccchhHHHHHHHhhcccceEEEEEEEEEEEEEEEEe
Confidence 88888888766532 22222233334444433 2355556665554443322 12 2666667999999999
Q ss_pred cCCCCCchhHHhh---CCCCCChhHHHHHHhccccEEEEEEEEccE-EEEEEEe---eecCCCCHHHHHHHHhhccceeE
Q 008004 141 KSPLVLQENVKRA---IPASWDPPSLASFIENFGTHVITSVTIGGK-DVIYVKQ---HQSSPLSTMEIKTYVQDVGNQRF 213 (581)
Q Consensus 141 ~~~l~Ls~eF~ka---LP~~yd~~~Y~~FIe~YGTHyitsvtLGGk-dvi~Vkq---~~sS~lt~~evk~cLs~~a~~~f 213 (581)
+++++|+++|+++ ||..||+++|++||++||||||++++|||+ +++++.+ ++.+++|.+||++||+.+++++|
T Consensus 275 ~~~l~L~~~F~~~l~~LP~~y~~~~y~~fi~~yGTHyi~s~~lGG~~~~i~~l~~~~~~~sglt~~dvk~Cl~~e~~~~~ 354 (554)
T 3ojy_A 275 KDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGSLGIQY 354 (554)
T ss_dssp SSSBCBCHHHHHHHHTCCSSCCHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHTTCCHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCHHHHHHHHhCCccCCHHHHHHHHHhcCcEEEEeeeeCcEEEEEEEEehhhhhhcCCCHHHHHHHHhhcccEEE
Confidence 8999999999985 799999999999999999999999999999 7776543 46889999999999999998776
Q ss_pred e---cccccccccccccccCCCCCCcccCCccCCCCCCCCcccCCcCeEEEEEeecCCcc----------hhhHHHHHHh
Q 008004 214 S---DKDSLTSSGQLKLKDKGLDPGLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDL----------EQNHRQWART 280 (581)
Q Consensus 214 ~---~~~~~~s~~~~~~~ek~k~~~sf~~q~~~~r~~~~s~~s~~ed~~VI~~vrGG~~~----------~~~~~~Wl~S 280 (581)
. .+++..+ .+.|++..++.. . +.+...++ .+++..|+||++. .+.|++|++|
T Consensus 355 ~~~~~~~~~~~--~~~C~~~~~~~~-~----------~~~~~~~~--~~~~~~V~GG~~~~~~~L~~~~~~~~~~~W~~S 419 (554)
T 3ojy_A 355 EDKINVGGGLS--GDHCKKFGGGKT-E----------RARKAMAV--EDIISRVRGGSSGWSGGLAQNRSTITYRSWGRS 419 (554)
T ss_dssp ---------------CCTTTTTTCS-H----------HHHHHTTE--EEEEECCBSCC----------CCCCCHHHHHHH
T ss_pred eeeeeeecccc--cccccccccccc-c----------cccccccc--ceEEEEEECCCccccchhhcccCHHHHHHHHHH
Confidence 2 2222221 223333211100 0 00111222 3477889999863 4689999999
Q ss_pred cccCCceeeeeeeehhhhcC--C----chhHHHHHHHHHHHHHcCCCHHHHHHHhhhccccceeeccCCC-C-C-CcccC
Q 008004 281 VRSSPDVIEMTFFPITALLD--G----ITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTKI-P-G-QQRKE 351 (581)
Q Consensus 281 V~~~P~vI~~kL~PI~eLL~--~----~p~k~~Lk~AI~~YL~yKP~ieeL~~flefq~p~~waPc~n~l-p-g-~~r~~ 351 (581)
|+++|+||+|+|.|||+||+ + .++|+||++||++||. ++.||+|+||+|+. | . ...+.
T Consensus 420 v~~~P~vI~~~l~PI~~Lv~~~~~p~~~~kr~nL~~Ai~~Yl~-------------e~~~c~c~pC~~~g~~~~~gt~C~ 486 (554)
T 3ojy_A 420 LKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYLM-------------EFNACRCGPCFNNGVPILEGTSCR 486 (554)
T ss_dssp GGGSCEEEEEEEEEGGGGGGGBTTCCCHHHHHHHHHHHHHHHH-------------HTCGGGSCCCTTTCCEEEETTEEE
T ss_pred HhcCCceEEEEeEeHHHhcCcccCCccHHHHHHHHHHHHHHHh-------------hcccccccccCCCCEEcCCCCccc
Confidence 99999999999999999998 3 3578999999999999 89999999999984 4 2 25566
Q ss_pred CCCCc
Q 008004 352 PVCPS 356 (581)
Q Consensus 352 ~~~ps 356 (581)
+.|+.
T Consensus 487 c~C~~ 491 (554)
T 3ojy_A 487 CQCRL 491 (554)
T ss_dssp ECCCS
T ss_pred ccCCC
Confidence 66654
No 4
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=100.00 E-value=5e-38 Score=366.45 Aligned_cols=311 Identities=19% Similarity=0.277 Sum_probs=207.9
Q ss_pred HHHhhhcccceeecccc------cccccCCCCCCceEEecCccceeeeecCCeeecCCCCcccccc-cccceeeccccch
Q 008004 12 ANSVQALGRGFDVNFDT------RLLYCKGVAGSRVVEVDEEHKKDLFLYDEIVVPNVSRDIKNSQ-ESIGRQSSGVCTY 84 (581)
Q Consensus 12 ~~ai~~lG~GyDlt~D~------rl~~ck~~~gsrli~id~~~~r~l~~P~g~~v~~v~~~ikc~k-ger~r~~Sdv~sf 84 (581)
.++++.+|.||||+..- -.+|..+ .-+.+. |.+...-+-+|..+..- ...++|++ .....+.++..+|
T Consensus 166 iPg~~l~G~G~dilt~~~~g~vlD~~~~~g--~C~~~~-~~~~~~~yr~P~nv~~~--~~~~~~~~~~~sse~y~S~~~~ 240 (913)
T 3t5o_A 166 IPSVQLMGNGFHFLAGEPRGEVLDNSFTGG--ICKTVK-SSRTSNPYRVPANLENV--GFEVQTAEDDLKTDFYKDLTSL 240 (913)
T ss_dssp CTTGGGGGEEEETTTTEEEEECBCSSCCCS--CCCEEC-CTTSSSCEECCTTEEEE--ECCCCCCGGGEEEEEESCGGGG
T ss_pred cchhhhhcCcEEeecCccccccccccccCC--eeeEEE-CCCCCceEecccceeeE--EEEEEEEecceeHhhhhhHHHH
Confidence 36899999999998621 1233321 112333 22233346799886432 23467888 7777888877776
Q ss_pred hhHHH---HhhcceeeecCcCCceEEEEEee--ccchhhcc----ccc--eeeEEeeeEEEEEEEEE-cCCCCCchhHHh
Q 008004 85 PQMVE---YFNEKANLSGGFPLGSFNAAFSF--TASKHIDA----AAT--KTLSMDGFYIPLAKVEL-KSPLVLQENVKR 152 (581)
Q Consensus 85 ~qmse---~fn~~~slsg~ip~g~fna~f~~--s~S~~~~~----ast--Ksl~~~~~~i~ly~f~L-~~~l~Ls~eF~k 152 (581)
.+... .++..+.++++|+. .|++++++ +++..... ..+ ..|......|++|+|+| .++++|+++|++
T Consensus 241 ~~~~~~~~s~s~~~~~~~~i~~-~~s~~~~~~~s~s~~~~~~~~~s~~~~~~f~~~~~~~~~~~~~l~~~~l~L~~~F~~ 319 (913)
T 3t5o_A 241 GHNENQQGSFSSQGGSSFSVPI-FYSSKRSENINHNSAFKQAIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVFLK 319 (913)
T ss_dssp GC-----------------CCC-CCCTTTCCCCCCTTHHHHHHHHHHTSSEEEEEEEEEEEEEEEEECSSSCCBCHHHHH
T ss_pred HHhhhhcceeecccceeecccc-ceeeeeEeeccchHHHHHHHHhhhccceEEEEEEEEEEEEEEEecCCCCCcCHHHHH
Confidence 44222 22333334445543 24443333 33332222 222 23666666999999999 679999999998
Q ss_pred h---CCCCCChhHHHHHHhccccEEEEEEEEccE-EEEEEEe---eecCCCCHHHHHHHHhhccceeEeccccccccccc
Q 008004 153 A---IPASWDPPSLASFIENFGTHVITSVTIGGK-DVIYVKQ---HQSSPLSTMEIKTYVQDVGNQRFSDKDSLTSSGQL 225 (581)
Q Consensus 153 a---LP~~yd~~~Y~~FIe~YGTHyitsvtLGGk-dvi~Vkq---~~sS~lt~~evk~cLs~~a~~~f~~~~~~~s~~~~ 225 (581)
+ ||..|++++|++||++||||||++++|||+ +++++.+ ++.++++..|+++||+.+++++|.++++..+. .
T Consensus 320 ~l~~LP~~y~~~~Y~~fi~~yGTHyits~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~cl~~~~~~~~~~~~~~~~~--~ 397 (913)
T 3t5o_A 320 ALNHLPLEYNSALYSRIFDDFGTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEEAKHCVRIETKKRVLFAKKTKVE--H 397 (913)
T ss_dssp HTTSSCSSCCHHHHHHHHHHHCSEECSEEEEEEEEEEEEEEEHHHHHHHTCCHHHHHHHHHHHHHHHTSCCCCCCCC--G
T ss_pred HHHhCccccCHHHHHHHHHhcCcEEEEeEEeccEEEEEEEEchhhHhhcCCCHHHHHHhhheecceEEEEEeecccc--C
Confidence 5 599999999999999999999999999999 7766554 46779999999999999888777553333221 2
Q ss_pred ccccCCCCCCcccCCccCCCCCCCCcccCCcCeEEEEEeecCCcc---------------hhhHHHHHHhcccCCceeee
Q 008004 226 KLKDKGLDPGLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDL---------------EQNHRQWARTVRSSPDVIEM 290 (581)
Q Consensus 226 ~~~ek~k~~~sf~~q~~~~r~~~~s~~s~~ed~~VI~~vrGG~~~---------------~~~~~~Wl~SV~~~P~vI~~ 290 (581)
.|.+... .. . ...+...++++ ++..++||++. .++|++|++||+++|+||+|
T Consensus 398 ~c~~~~~----~~--~-----~~~s~~~~~~~--~~~~v~GG~~~~~~~L~~~~~~~~~~~~~~~~W~~Sv~~~P~~I~~ 464 (913)
T 3t5o_A 398 RCTTNKL----SE--K-----HEGSFIQGAEK--SISLIRGGRSEYGAALAWEKGSSGLEEKTFSEWLESVKENPAVIDF 464 (913)
T ss_dssp GGTSSTT----GG--G-----GTTCSGGGSSE--EEECCBSSCHHHHHHHSCCTTSSSSSHHHHHHHHHHHHHSCEEEEE
T ss_pred cccCCCc----cc--c-----ccccccccccc--ceEEEeCCCcchhhhhhhhccCCCCCHHHHHHHHHHHhhCCceeee
Confidence 2222110 00 0 01111223344 67788999851 26899999999999999999
Q ss_pred eeeehhhhcCCc----hhHHHHHHHHHHHHHcCCCHHHHHHHhhhccccceeeccCCC-C--CCcccCCCCCc
Q 008004 291 TFFPITALLDGI----TGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTKI-P--GQQRKEPVCPS 356 (581)
Q Consensus 291 kL~PI~eLL~~~----p~k~~Lk~AI~~YL~yKP~ieeL~~flefq~p~~waPc~n~l-p--g~~r~~~~~ps 356 (581)
+|.|||+||+++ ++|+||++||++||. ++++|+|+||+|+. | ....+.+.|+.
T Consensus 465 ~l~PI~eLv~~~~~~~~kr~~Lk~Ai~~Yl~-------------e~~~c~C~PC~ngg~~~l~g~~C~C~C~~ 524 (913)
T 3t5o_A 465 ELAPIVDLVRNIPCAVTKRNNLRKALQEYAA-------------KFDPCQCAPCPNNGRPTLSGTECLCVCQS 524 (913)
T ss_dssp ECCBGGGGCCSSTTHHHHHHHHHHHHHHHHH-------------TTCGGGSCCBTTTBEEEEETTEEEEECCT
T ss_pred eeccHHHHhhccCchHHHHHHHHHHHHhhcc-------------ccccccCCCCCCCCEeecCCCceEEEccC
Confidence 999999999987 578999999999999 89999999999994 3 44566665654
No 5
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A
Probab=100.00 E-value=1.2e-36 Score=322.08 Aligned_cols=280 Identities=19% Similarity=0.233 Sum_probs=192.8
Q ss_pred HHHhhhcccceeecc--------cccc--cccCCCCCCceEEec--------Cc------cc--eeeeecCCeeecCCCC
Q 008004 12 ANSVQALGRGFDVNF--------DTRL--LYCKGVAGSRVVEVD--------EE------HK--KDLFLYDEIVVPNVSR 65 (581)
Q Consensus 12 ~~ai~~lG~GyDlt~--------D~rl--~~ck~~~gsrli~id--------~~------~~--r~l~~P~g~~v~~v~~ 65 (581)
.++++.+|.|||+.. |.+. ..|. .+.+. +. +. +-+.+|.++.. ...
T Consensus 21 iPg~~~~g~G~dilt~~~~g~v~D~~~~~g~C~------~~~~~~~~~~~~d~~~~~~~~~~~~~~yr~P~nv~~--~~~ 92 (367)
T 2rd7_A 21 IPGSQKAALGYNILTQEDAQSVYDASYYGGQCE------TVYNGEWRELRYDSTCERLYYGDDEKYFRKPYNFLK--YHF 92 (367)
T ss_dssp CTTHHHHTEEEETTTTEEEEESBCTTCCTTCCC------EEEECSSCCEEEETTTTEEEECSCCEEEECCTTEEE--EEE
T ss_pred CCChHHHCCceeeecCCccCccccCCccCCEEE------EEecCccccccccccccchhhcccccceecChhhee--eeE
Confidence 478999999999996 3322 4454 22111 10 01 12779998742 113
Q ss_pred cccccccccceeeccccchhh-HHHHhhcceeeec--CcCCceEEEEEeeccchhhccc-------cc-eeeEEeeeEEE
Q 008004 66 DIKNSQESIGRQSSGVCTYPQ-MVEYFNEKANLSG--GFPLGSFNAAFSFTASKHIDAA-------AT-KTLSMDGFYIP 134 (581)
Q Consensus 66 ~ikc~kger~r~~Sdv~sf~q-mse~fn~~~slsg--~ip~g~fna~f~~s~S~~~~~a-------st-Ksl~~~~~~i~ 134 (581)
..+|+......+.+++.+|.+ ++...+.+++++. ++|...+++++++++|...++. .+ .+|......|+
T Consensus 93 ~~~~~~~~s~~~y~S~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~s~S~~~~f~~~~~~~~~~~~~f~~~~~~~~ 172 (367)
T 2rd7_A 93 EALADTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQDTSFLNELNKYNEKKFIFTRIFTKVQ 172 (367)
T ss_dssp CCCCCCCCEEEEESSHHHHHHHHHHHTTSSEEEEECCC---CEEEEEESCCSSCCHHHHHHHHTTCSTTEEEEEEEEEEE
T ss_pred EEEEeeecchhheecHHHHHHHHHhhhccccccccccccccceEEEEeeecccchHHHHHHHHHhhcCCcEEEEEEEEEE
Confidence 468999999988888777633 3333344444333 3444467788887776433321 12 22666566999
Q ss_pred EEEEEE-cCCCCCchhHHhh---CCCCCChhHHHHHHhccccEEEEEEEEccE-EEEEEEe---eecCCCCHHHHHHHHh
Q 008004 135 LAKVEL-KSPLVLQENVKRA---IPASWDPPSLASFIENFGTHVITSVTIGGK-DVIYVKQ---HQSSPLSTMEIKTYVQ 206 (581)
Q Consensus 135 ly~f~L-~~~l~Ls~eF~ka---LP~~yd~~~Y~~FIe~YGTHyitsvtLGGk-dvi~Vkq---~~sS~lt~~evk~cLs 206 (581)
+|+|+| +++++|+++|+++ ||..|++++|++||++||||||++++|||+ +++++.+ +++++++.+|+++|++
T Consensus 173 ~~~~~l~~~~~~L~~~F~~~l~~LP~~y~~~~y~~fI~~yGTHyits~~lGG~~~~i~~~~~~~~~~s~~t~~e~~~cl~ 252 (367)
T 2rd7_A 173 TAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTCFG 252 (367)
T ss_dssp EEEEEECSSSBCBCHHHHHHHHTSCSSCCHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHHTCCHHHHHHHHH
T ss_pred EEEEEEECCCCCCCHHHHHHHHhCcccCCHHHHHHHHHHcCcEEEeccccCcEEEEEEEEehHhHhhCCCCHHHHHHHHH
Confidence 999999 7899999999995 599999999999999999999999999999 7777553 3677999999999999
Q ss_pred hccceeEec---ccccccccccccccCCCCC---CcccCCccCCCCCCCCcccCCcCeEEEEEeecCCcc----------
Q 008004 207 DVGNQRFSD---KDSLTSSGQLKLKDKGLDP---GLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDL---------- 270 (581)
Q Consensus 207 ~~a~~~f~~---~~~~~s~~~~~~~ek~k~~---~sf~~q~~~~r~~~~s~~s~~ed~~VI~~vrGG~~~---------- 270 (581)
.+++++|.+ +++..+ ...|.+...+. .+|. .+.++ ++..++||++.
T Consensus 253 ~~a~~~~~~~v~~~~~~~--~~~c~~~~~~~~~~~~~~--------------~~~~~--~~~~v~GG~~~~~~~L~~~~~ 314 (367)
T 2rd7_A 253 GSLGIQYEDKINVGGGLS--GDHCKKFGGGKTERARKA--------------MAVED--IISRVRGGSSGWSGGLAQNRS 314 (367)
T ss_dssp HHTTCCC--------------CHHHHHTTCCSHHHHHH--------------TTEEE--EEECCBSCCC-----------
T ss_pred hhcCeeeeccceeecccC--cccccccccccccccccc--------------ccccc--eEEEEECCCccccchhccCCC
Confidence 998877722 112222 12232211000 0111 11222 66778999853
Q ss_pred hhhHHHHHHhcccCCceeeeeeeehhhhcC--Cchh----HHHHHHHHHHHHH
Q 008004 271 EQNHRQWARTVRSSPDVIEMTFFPITALLD--GITG----KEHLTRAIGLYLE 317 (581)
Q Consensus 271 ~~~~~~Wl~SV~~~P~vI~~kL~PI~eLL~--~~p~----k~~Lk~AI~~YL~ 317 (581)
+++|++|++||+++|+||+|+|.||++||+ ++|+ |++|++||++||.
T Consensus 315 ~~~~~~W~~Sv~~~P~~I~~~l~PI~~Ll~~~~~p~~~~kk~~Lk~Ai~~Yl~ 367 (367)
T 2rd7_A 315 TITYRSWGRSLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYLM 367 (367)
T ss_dssp CCCHHHHHHHHHHCCEEEEEEEEEGGGGGGGBTTCCCHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhhcCCceEEEEEEEHHHhcCcccCCccHHHHHHHHHHHHHHhC
Confidence 268999999999999999999999999999 6777 9999999999984
No 6
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp}
Probab=100.00 E-value=4.8e-38 Score=345.05 Aligned_cols=328 Identities=15% Similarity=0.188 Sum_probs=224.3
Q ss_pred HHHHHhhhcccceeecccc-cccccCCCCCCceEEe-----cCccceeeeecCCeeecCCCCcccccccccceeeccc-c
Q 008004 10 TAANSVQALGRGFDVNFDT-RLLYCKGVAGSRVVEV-----DEEHKKDLFLYDEIVVPNVSRDIKNSQESIGRQSSGV-C 82 (581)
Q Consensus 10 ~a~~ai~~lG~GyDlt~D~-rl~~ck~~~gsrli~i-----d~~~~r~l~~P~g~~v~~v~~~ikc~kger~r~~Sdv-~ 82 (581)
.+.+|+++||+||||+.|+ |+.+||. +|||+ +++.++.+.+ +| ++..||..|.|..+.+++|.+.+ .
T Consensus 37 ~~~~g~~~lG~GyDI~g~y~~~~~~k~----~V~D~~~~~~~~~~~~~v~i-~~-~~yrvP~ni~~~~~~~~~f~s~~ye 110 (511)
T 2qp2_A 37 TVIAGAEMIGTSYDVFGKYCNVGSCMN----SLFDERKINASEDNFKKVTI-LG-KTLKVPYYIDCYSVGDLKYTNASGE 110 (511)
T ss_dssp TBCTTGGGTTEEECTTSSSSCGGGEEE----ECBCHHHHHTCGGGEEEEEE-TT-EEEEEETTCEEEEEEEEEEEEEEES
T ss_pred cchhhhHhheeeeeecccccCccccCc----ceeechheecccCCCceEee-CC-eeecCCcceEeeeccceEEEEEEec
Confidence 4578999999999999997 8999993 89994 3556777766 56 45678899999999999987322 1
Q ss_pred chhhHHHHhhcceeeecC--cCCceEEEEEeeccchhhccccceeeEEeeeEEEEEEEEE-cCC--CCCchhHHhhCCCC
Q 008004 83 TYPQMVEYFNEKANLSGG--FPLGSFNAAFSFTASKHIDAAATKTLSMDGFYIPLAKVEL-KSP--LVLQENVKRAIPAS 157 (581)
Q Consensus 83 sf~qmse~fn~~~slsg~--ip~g~fna~f~~s~S~~~~~astKsl~~~~~~i~ly~f~L-~~~--l~Ls~eF~kaLP~~ 157 (581)
|+.++...++++++++|+ +++|+|+++|+.+.. .....+|......|++|++++ .+. +.|+++|+++|+..
T Consensus 111 S~~ey~~~l~~~~svsgs~~~fsgs~~a~F~~s~~----~~k~~~f~~v~~~i~~y~~~~~~~~l~~~Ls~~F~k~L~~~ 186 (511)
T 2qp2_A 111 SIESYQSNISSKSRIKGNYLFFSASLKVDFDTDSL----TDFENAFSRIQYTYDLYILKSSAEALKEFLKESVKTALDKA 186 (511)
T ss_dssp SHHHHHHHHHHTTCCSSSCCTTTTHHHHHSCTGGG----GCTTEEEEEEEEEEEEEEEECCHHHHGGGBCHHHHHHHHHC
T ss_pred CHHHHHHHHHHhheeeeceeeeeEEEEEEeccccc----cccceEEEEEEEEEEEEEEEeChhhhhhhcCHHHHHhhccc
Confidence 234445567788888875 556767776654311 111223666667999999999 544 58999999999888
Q ss_pred CChhHHHHHHhccccEEEEEEEEccE-EEEEEEee-ecCCCCHHHHHHHHhhccceeEecccccccc-cccccccCCCCC
Q 008004 158 WDPPSLASFIENFGTHVITSVTIGGK-DVIYVKQH-QSSPLSTMEIKTYVQDVGNQRFSDKDSLTSS-GQLKLKDKGLDP 234 (581)
Q Consensus 158 yd~~~Y~~FIe~YGTHyitsvtLGGk-dvi~Vkq~-~sS~lt~~evk~cLs~~a~~~f~~~~~~~s~-~~~~~~ek~k~~ 234 (581)
+++.+|++||++||||||++++|||+ +++++.+. +..+ ..+++.|++. .|..... .+. .+..+.+..
T Consensus 187 ~~~~~y~~fI~~YGTHyits~~lGG~~~y~~s~~~~~~~~--~~~is~~a~a----s~~~~~~-~s~~~~~~~~~~~--- 256 (511)
T 2qp2_A 187 DTEEDMNDLFNTWGSHFLSGVVMGGCAQYSSSTNKYTSNL--TNSFDVVAAA----SFAGFIG-LSARTGNSFMEDI--- 256 (511)
T ss_dssp CSHHHHHHHHHHTCSEEECEEEEEEEEEEEEEEETTTSCC--SSCHHHHHHH----HHHHHTT-CCCCCTTTHHHHH---
T ss_pred cchhhHHHHHHhCCeEEEEeeecccEEEEEEeeccccccc--cceeeeEEEE----EEeeeee-ecccccccccccc---
Confidence 89999999999999999999999999 55544432 2222 2244444432 2211101 111 111111100
Q ss_pred CcccCCccCCCCCCCCcccCCcCeEEEEEeecCC-----cc-----------------hhhHHHHHHhcccCCceeeee-
Q 008004 235 GLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGD-----DL-----------------EQNHRQWARTVRSSPDVIEMT- 291 (581)
Q Consensus 235 ~sf~~q~~~~r~~~~s~~s~~ed~~VI~~vrGG~-----~~-----------------~~~~~~Wl~SV~~~P~vI~~k- 291 (581)
.+|++ ..+++..++||+ +. ..+|.+|++||+++|++|+|+
T Consensus 257 ~sf~s-----------------~~~~~~~V~GG~~s~~d~~~~aL~~~~ps~~~~~~~~~~y~~W~~SV~~nP~vIdf~~ 319 (511)
T 2qp2_A 257 KKFRS-----------------ASNIKTHAIGGDLSRFDPFGGATSADQPSAEEIAAAKKAFEDWKASVPNAPELVNFAD 319 (511)
T ss_dssp HHHHH-----------------TEEEEEEEESSCTTTCCTTTTCCCCSSCCHHHHHHHHHHHHHHHHHSTTSCEEEEECS
T ss_pred ccccc-----------------cCceEEEEECCCCcccccccceeccCCCcccccccchhHHHHHHHHhhhchheEeecC
Confidence 01111 133567789997 21 147999999999999999996
Q ss_pred ---eeehhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHhhhccccceeeccCC-C---CCCcccCCCCCceeEEeecc
Q 008004 292 ---FFPITALLDGITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTK-I---PGQQRKEPVCPSLQFSMMGQ 364 (581)
Q Consensus 292 ---L~PI~eLL~~~p~k~~Lk~AI~~YL~yKP~ieeL~~flefq~p~~waPc~n~-l---pg~~r~~~~~pslqfs~mgp 364 (581)
|.|||+||++.++|++||+||++||. + ..|+|+||+|| + .-..+|.|.||. .+-|+
T Consensus 320 ~~sL~PI~eLV~~~~Kk~~LkrAieeYl~-------------e-~~~~~~~~~~n~~~~~~~g~~c~c~cp~---g~~g~ 382 (511)
T 2qp2_A 320 SNPLTGIWELCSDRTQKAKLKKHFETVWA-------------P-AESAKRRVHADYIDEIIIGINNTNTPPE---GYIGL 382 (511)
T ss_dssp SCCEEEGGGGCSCHHHHHHHHHHHHHTHH-------------H-HHHHTTCCCCCEEEEEEEEECTTCCCCT---TCEEC
T ss_pred CccceeHHHhccCHHHHHHHHHHHHHHHh-------------h-cCcccccccCcceeEEecCCccCccCCC---Ccccc
Confidence 99999999999999999999999998 5 57779999999 2 123688899987 22222
Q ss_pred ------------EEEEeeee--Eee---CCCceeeeeEEEeccc
Q 008004 365 ------------KLYITQEQ--ISV---GRKPVTGLRLCLEGAK 391 (581)
Q Consensus 365 ------------klyv~t~~--v~~---~~~pvtg~rl~leg~k 391 (581)
-+|..-.. .|. +++|||-|++-.++.+
T Consensus 383 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 426 (511)
T 2qp2_A 383 KSTKDENLNSKGNICLFMHKAKYDPNIDNKDCITELKFITVRDK 426 (511)
T ss_dssp BSSSBCCSBTGGGEEEEEEEECCCTTSCCCCEEEEEEEECSTTC
T ss_pred ccccccccCCCcEEEEEEEecccCccccCCCcceEEEEecCCCC
Confidence 23332222 222 5788888876666555
No 7
>3kk7_A Putative cell invasion protein with MAC/perforin; STR genomics, joint center for structural genomics, JCSG; 2.46A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=2.8e-15 Score=161.00 Aligned_cols=276 Identities=13% Similarity=0.146 Sum_probs=150.3
Q ss_pred HHHHHhhhcccceeec-ccccc--cccCCCCCCceEEecCccceeeeecCCeeecCCCCcccccccccceeeccccchhh
Q 008004 10 TAANSVQALGRGFDVN-FDTRL--LYCKGVAGSRVVEVDEEHKKDLFLYDEIVVPNVSRDIKNSQESIGRQSSGVCTYPQ 86 (581)
Q Consensus 10 ~a~~ai~~lG~GyDlt-~D~rl--~~ck~~~gsrli~id~~~~r~l~~P~g~~v~~v~~~ikc~kger~r~~Sdv~sf~q 86 (581)
+.....|+||+|||++ +|+-. ..|- +..+|||+.- ...-|+.+... .+.-...+...|.+ --+| +
T Consensus 48 ~~~~~~d~LGygYdI~~G~yi~Gd~~s~---k~pVIDIekl---~~~~p~~i~~~----~~~t~~~~~~sY~~-~d~~-e 115 (541)
T 3kk7_A 48 SFTDATDFLGCSYAVENGTSIIGDFANA---KYPVVNMKKL---LERYPSYINPK----ELRTTETKALSYSD-FDRL-E 115 (541)
T ss_dssp -CCSGGGGTTEEECSTTSCSCTTCGGGE---EEESBCHHHH---HHHCGGGEEEE----EEEEEEEEEEEESS-TTGG-G
T ss_pred ccCccccccccccccCCCcccccCcccc---CCceeeHHHh---hhhCccceeec----cccccceeeeeccc-hhhH-H
Confidence 4457899999999997 66653 2232 3589999862 22345555331 11111111112211 1222 1
Q ss_pred HHHHhhcceeeecCcCCceEEEEEeec----cchhhccccceeeEEeeeEEEEEEEEE-cC--CC------CCchhHHhh
Q 008004 87 MVEYFNEKANLSGGFPLGSFNAAFSFT----ASKHIDAAATKTLSMDGFYIPLAKVEL-KS--PL------VLQENVKRA 153 (581)
Q Consensus 87 mse~fn~~~slsg~ip~g~fna~f~~s----~S~~~~~astKsl~~~~~~i~ly~f~L-~~--~l------~Ls~eF~ka 153 (581)
..+.+..+.+.++++..|.|+.+..-+ .+...++++.-.++--.+.+...++.| .+ -+ -|+++|+.+
T Consensus 116 ~~s~~tKkv~s~fSln~g~Fs~g~k~TiT~~F~s~~~~SsKysygel~v~~~~rr~~L~~s~~~L~~i~s~YLt~~Fi~d 195 (541)
T 3kk7_A 116 KNKTFTKTVKSGFSLNLGPFKFGRQKTIKETFVHNTDDSEKVVHGELSIEVVNGMLNLQTAPSALRKIAADYLDELFVDA 195 (541)
T ss_dssp TTCTTGGGBCTTSCCCCHHHHHHHHHHHHHHSCCCCCCGGGEEEEEEEEEEEEEEEEECCCHHHHHHHHHHCBCHHHHHH
T ss_pred HHHHHHhhhccceeeeccccccccccceehhccccccccceeeEEEEEEeeeccEEEecCChhHHHHHHHhhchHHHHHH
Confidence 233344444455555444444222111 110111222223666677888899999 43 23 588999998
Q ss_pred CCCCCChhHHHHHHhccccEEEEEEEEccE-EEEEEEeeecCCCCHHHHHHHHhh--ccceeEecccc--------cccc
Q 008004 154 IPASWDPPSLASFIENFGTHVITSVTIGGK-DVIYVKQHQSSPLSTMEIKTYVQD--VGNQRFSDKDS--------LTSS 222 (581)
Q Consensus 154 LP~~yd~~~Y~~FIe~YGTHyitsvtLGGk-dvi~Vkq~~sS~lt~~evk~cLs~--~a~~~f~~~~~--------~~s~ 222 (581)
|=. +. -.+||+.||||+++...+||+ .++|.--.. +..+.++-.+-++. .|+..+...+. ..+.
T Consensus 196 L~n-~s---~~eIVq~YGTHVLTDI~~GGr~~alY~g~~~-~~~~~~~Kek~md~~I~As~~~~~~~~~~~~~~i~~~S~ 270 (541)
T 3kk7_A 196 LYN-SS---MVELMQSYGEFVLTGYYTGGRASALFYGVDT-NSIQFDSKEKDMDVAINASYEWKNKKPTAPSDTIHSASG 270 (541)
T ss_dssp HHH-SC---HHHHHHHHCSEEECEEEEEEEEEEEEEEEES-SCCSHHHHHHHHHHHHHHSEEEESCCCC----------C
T ss_pred Hhh-CC---HHHHHHhhCCeEEEEEEeccEEEEEEEEeec-cccchHHhhhhhhheeeeeeeecccccccccccceeeee
Confidence 722 11 279999999999999999999 666653322 22233332222222 22222221100 1110
Q ss_pred cccccccCCCCCCcccCCccCCCCCCCCcccCCcCeEEEEEeecCCcc-------------hhhHHHHHHhccc--CCce
Q 008004 223 GQLKLKDKGLDPGLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDL-------------EQNHRQWARTVRS--SPDV 287 (581)
Q Consensus 223 ~~~~~~ek~k~~~sf~~q~~~~r~~~~s~~s~~ed~~VI~~vrGG~~~-------------~~~~~~Wl~SV~~--~P~v 287 (581)
... .+.+ . .. +.+......+..+.....||++- .-++..|.+||.+ +..+
T Consensus 271 n~s-~~~~---~--g~---------~~Sl~kkn~~~~~~ikT~GG~~g~~i~~~~~~~~~~sIDls~W~~Sl~Ds~n~~L 335 (541)
T 3kk7_A 271 NLS-IGTK---R--EN---------SETITNKFSALSYSIKTLGGAYGYSISTPPYDITNYSIDLTPWLQSLNDPKTHTM 335 (541)
T ss_dssp EEE-ESCC---H--HH---------HHHHHTTEEEEEEEEEEESSSSSCSSCCCCEETTTCCEECHHHHHHTTSGGGCEE
T ss_pred ecc-cCcc---c--cc---------ccccccccceEEEEEEeeCCCccccccccCCCCCCcceehHHhhhhhcccccceE
Confidence 000 0000 0 00 00000111245555667899631 2589999999999 6889
Q ss_pred eee---eeeehhhhcCCchhHHHHHHHHHHHHH
Q 008004 288 IEM---TFFPITALLDGITGKEHLTRAIGLYLE 317 (581)
Q Consensus 288 I~~---kL~PI~eLL~~~p~k~~Lk~AI~~YL~ 317 (581)
|++ .|.||++||.+...|+.|+.|+++||.
T Consensus 336 IDI~~~gLyPIyDfI~e~n~Kqri~~t~~~~l~ 368 (541)
T 3kk7_A 336 IDLQDGGLYPISDFILEENFKQRYNDTHMDFQY 368 (541)
T ss_dssp EEECTTCEEEGGGGCCCHHHHHHHHHHHTTSCC
T ss_pred EEcCCCCeeehHHhhhchhHHHHHHHHHhhccc
Confidence 998 799999999998888999999988886
No 8
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=24.99 E-value=49 Score=30.13 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=32.9
Q ss_pred cccccccccccccc-ccCCC---CCCCceEEeceeeeeeCcEEEEEE
Q 008004 532 AGNKLVKLIDMSEM-TKGPQ---DPPGHWLVTGGKLGVEKGKIVLRV 574 (581)
Q Consensus 532 ~~~kl~~~vd~~e~-~~gp~---d~pg~w~v~ga~l~~~~gki~l~~ 574 (581)
++..|++||-++|. .-||. |+|| .||-|.|.+|+-++|-
T Consensus 24 ~~gQllevlq~ae~~~~gps~apdt~~----v~A~llvSDgthsvrc 66 (161)
T 2i46_A 24 RAGQLLEVLQDAEAAVAGPSHAPDTSD----VGATLLVSDGTHSVRC 66 (161)
T ss_dssp EEEEEEEEEECCCCCCCSCCSSCCCTT----SCEEEEEECSSCEEEE
T ss_pred chHHHHHHHHHhccccCCCCCCCCCCC----ceeEEEEcCCceEEEE
Confidence 55669999999998 47887 8888 6999999999988773
No 9
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=18.47 E-value=66 Score=26.37 Aligned_cols=52 Identities=13% Similarity=0.340 Sum_probs=33.4
Q ss_pred HHhhCCCCCChhHHHHHHhccccEEEEEEEE-----ccE--EEEEEEeeecCCCCHHHHHHHHhhc
Q 008004 150 VKRAIPASWDPPSLASFIENFGTHVITSVTI-----GGK--DVIYVKQHQSSPLSTMEIKTYVQDV 208 (581)
Q Consensus 150 F~kaLP~~yd~~~Y~~FIe~YGTHyitsvtL-----GGk--dvi~Vkq~~sS~lt~~evk~cLs~~ 208 (581)
|...||...+..++.++++.||+ |.++.+ .|+ -+-+|.- -+.++.+++++..
T Consensus 23 fV~nLp~~~te~~L~~~F~~~G~--I~~v~i~~d~~tg~~kG~afV~f-----~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFSSIGE--VESAKLIRDKVAGHSLGYGFVNY-----VTAKDAERAINTL 81 (99)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSC--EEEEEEEECSSSCCEEEEEEEEE-----SSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC--EEEeEeeecCCCCcccccEEEEE-----CCHHHHHHHHHHh
Confidence 45678999999999999999997 344433 133 1223311 1466777777643
No 10
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=18.22 E-value=2.1e+02 Score=23.29 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=36.6
Q ss_pred HHhhCCCCCChhHHHHHHhccccEEEEEEEEccE-EEEEEEeeecCCCCHHHHHHHHhhccceeE
Q 008004 150 VKRAIPASWDPPSLASFIENFGTHVITSVTIGGK-DVIYVKQHQSSPLSTMEIKTYVQDVGNQRF 213 (581)
Q Consensus 150 F~kaLP~~yd~~~Y~~FIe~YGTHyitsvtLGGk-dvi~Vkq~~sS~lt~~evk~cLs~~a~~~f 213 (581)
|...||...+..++.++|..||.=.-+.+...|. .|.+ .+.++.+++++..-...+
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f--------~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 19 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEF--------VRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp EEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEE--------SSHHHHHHHHHHSSSEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEE--------CCHHHHHHHHHHHCcCCc
Confidence 4457899999999999999999733333333344 2332 256788888875544444
Done!