Query 008004
Match_columns 581
No_of_seqs 259 out of 547
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 15:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008004.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008004hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wi6a1 d.58.7.1 (A:69-143) Ri 46.3 8.7 0.00063 28.5 3.9 52 151-210 3-55 (75)
2 d1fxla1 d.58.7.1 (A:37-118) Hu 32.8 12 0.00087 27.7 2.7 59 150-213 6-69 (82)
3 d1fxla2 d.58.7.1 (A:119-203) H 30.8 13 0.00098 27.9 2.7 52 150-208 10-68 (85)
4 d1b7fa2 d.58.7.1 (A:205-289) S 26.6 17 0.0012 27.3 2.5 52 150-208 10-68 (85)
5 d1b7fa1 d.58.7.1 (A:123-204) S 26.5 15 0.0011 27.1 2.3 54 150-210 6-66 (82)
6 d2cpfa1 d.58.7.1 (A:362-446) P 25.0 20 0.0014 26.7 2.7 23 150-172 2-24 (85)
7 d1rk8a_ d.58.7.1 (A:) RNA-bind 23.6 21 0.0016 26.9 2.7 52 150-208 11-69 (88)
8 d1wg4a_ d.58.7.1 (A:) Splicing 21.6 69 0.005 24.4 5.6 58 150-214 19-76 (98)
9 d2cpha1 d.58.7.1 (A:454-547) P 19.2 26 0.0019 26.8 2.3 52 150-208 12-71 (94)
10 d2cq3a1 d.58.7.1 (A:110-202) R 19.0 30 0.0022 26.3 2.7 54 150-210 15-73 (93)
No 1
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.33 E-value=8.7 Score=28.54 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=36.7
Q ss_pred HhhCCCCCChhHHHHHHhccccEEEEEEEEccE-EEEEEEeeecCCCCHHHHHHHHhhccc
Q 008004 151 KRAIPASWDPPSLASFIENFGTHVITSVTIGGK-DVIYVKQHQSSPLSTMEIKTYVQDVGN 210 (581)
Q Consensus 151 ~kaLP~~yd~~~Y~~FIe~YGTHyitsvtLGGk-dvi~Vkq~~sS~lt~~evk~cLs~~a~ 210 (581)
...||..++..+..++++.||...+....-.|- .+.+ .+.++.++++...-.
T Consensus 3 V~nLp~~~t~~~l~~~F~~~g~~~~~~~~~~g~afv~f--------~~~~~A~~Ai~~ln~ 55 (75)
T d1wi6a1 3 IRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTL--------LNGEQAEAAINTFHQ 55 (75)
T ss_dssp EECCCTTCCHHHHHHHTTTSCEEEEEEETTTTEEEEEE--------SSHHHHHHHHHHHTT
T ss_pred EeCCCCcCCHHHHHHHHhcccccceeecccceeEEEEE--------CCHHHHHHHHHHhCC
Confidence 357899999999999999999766665555554 2222 256777777765443
No 2
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.82 E-value=12 Score=27.72 Aligned_cols=59 Identities=10% Similarity=0.201 Sum_probs=36.6
Q ss_pred HHhhCCCCCChhHHHHHHhccccEEEEEEEE---ccE-E-EEEEEeeecCCCCHHHHHHHHhhccceeE
Q 008004 150 VKRAIPASWDPPSLASFIENFGTHVITSVTI---GGK-D-VIYVKQHQSSPLSTMEIKTYVQDVGNQRF 213 (581)
Q Consensus 150 F~kaLP~~yd~~~Y~~FIe~YGTHyitsvtL---GGk-d-vi~Vkq~~sS~lt~~evk~cLs~~a~~~f 213 (581)
|...||..++..++.++++.||.-.-..+.. .|+ . +-+| .. .+.++.+.|++..-+..+
T Consensus 6 ~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv-~f----~~~~~a~~a~~~l~g~~~ 69 (82)
T d1fxla1 6 IVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV-NY----IDPKDAEKAINTLNGLRL 69 (82)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEE-EE----SSHHHHHHHHHHHTTCEE
T ss_pred EEECCCCCCCHHHHHHHHHHhCCcccccceeeccCCCceeeEEE-EE----CCHHHHHHHHHHhCCCEE
Confidence 4467999999999999999999743322221 233 1 2222 21 257788888765443333
No 3
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.83 E-value=13 Score=27.94 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=34.3
Q ss_pred HHhhCCCCCChhHHHHHHhccccEEEEEEEE-----ccE-E-EEEEEeeecCCCCHHHHHHHHhhc
Q 008004 150 VKRAIPASWDPPSLASFIENFGTHVITSVTI-----GGK-D-VIYVKQHQSSPLSTMEIKTYVQDV 208 (581)
Q Consensus 150 F~kaLP~~yd~~~Y~~FIe~YGTHyitsvtL-----GGk-d-vi~Vkq~~sS~lt~~evk~cLs~~ 208 (581)
|...||..++..++.++++.||+ |.++.+ .|+ . +-+|.= .+.++.+.|++..
T Consensus 10 fV~nLp~~~te~~L~~~F~~~G~--v~~v~i~~d~~~g~~kg~afV~f-----~~~~~a~~Ai~~l 68 (85)
T d1fxla2 10 YVSGLPKTMTQKELEQLFSQYGR--IITSRILVDQVTGVSRGVGFIRF-----DKRIEAEEAIKGL 68 (85)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTTTCCEEEEEEEEE-----SSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHhCC--ccccccccccccccCCCeeEEEE-----cCHHHHHHHHHHh
Confidence 34578999999999999999998 444433 344 2 333321 2567777777643
No 4
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=26.57 E-value=17 Score=27.26 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=34.5
Q ss_pred HHhhCCCCCChhHHHHHHhccccEEEEEEEE-----ccE-E-EEEEEeeecCCCCHHHHHHHHhhc
Q 008004 150 VKRAIPASWDPPSLASFIENFGTHVITSVTI-----GGK-D-VIYVKQHQSSPLSTMEIKTYVQDV 208 (581)
Q Consensus 150 F~kaLP~~yd~~~Y~~FIe~YGTHyitsvtL-----GGk-d-vi~Vkq~~sS~lt~~evk~cLs~~ 208 (581)
|...||..++..++.++++.||+ |.++.+ .|+ . +-+|.- .+.++.+.|++..
T Consensus 10 fV~nlp~~~te~~l~~~F~~~G~--i~~~~~~~d~~~g~~~g~afV~f-----~~~~~A~~Ai~~l 68 (85)
T d1b7fa2 10 YVTNLPRTITDDQLDTIFGKYGS--IVQKNILRDKLTGRPRGVAFVRY-----NKREEAQEAISAL 68 (85)
T ss_dssp EEESCCTTCCHHHHHHHHTSSSC--EEEEEEEECTTTCCEEEEEEEEE-----SSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhhCC--EeeeeeecccccccCceeEEEEE-----CCHHHHHHHHHHH
Confidence 44679999999999999999997 444443 233 1 223211 2567777777654
No 5
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=26.51 E-value=15 Score=27.10 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=36.1
Q ss_pred HHhhCCCCCChhHHHHHHhccccEEEEEEEE-----ccE-E-EEEEEeeecCCCCHHHHHHHHhhccc
Q 008004 150 VKRAIPASWDPPSLASFIENFGTHVITSVTI-----GGK-D-VIYVKQHQSSPLSTMEIKTYVQDVGN 210 (581)
Q Consensus 150 F~kaLP~~yd~~~Y~~FIe~YGTHyitsvtL-----GGk-d-vi~Vkq~~sS~lt~~evk~cLs~~a~ 210 (581)
|...||..++..++.++++.||. |.++.+ .|+ . +-+|.= .+.++.+.|++..-.
T Consensus 6 ~V~nLp~~~t~~~l~~~F~~~G~--v~~~~i~~~~~~g~~~g~afV~f-----~~~~~A~~ai~~lng 66 (82)
T d1b7fa1 6 IVNYLPQDMTDRELYALFRAIGP--INTCRIMRDYKTGYSYGYAFVDF-----TSEMDSQRAIKVLNG 66 (82)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSC--EEEEECCEETTTTEECSEEEEEE-----SSHHHHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHHHhCC--cceeeeeeecccCCccccceEEE-----CCHHHHHHHHHHhCC
Confidence 34678999999999999999997 555554 233 1 222211 257888888865433
No 6
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.95 E-value=20 Score=26.71 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=20.2
Q ss_pred HHhhCCCCCChhHHHHHHhcccc
Q 008004 150 VKRAIPASWDPPSLASFIENFGT 172 (581)
Q Consensus 150 F~kaLP~~yd~~~Y~~FIe~YGT 172 (581)
|...||...+..+..++++.||+
T Consensus 2 fV~nLp~~~t~~~l~~~F~~~G~ 24 (85)
T d2cpfa1 2 FIKNLNFSTTEETLKGVFSKVGA 24 (85)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSC
T ss_pred EEcCCCCCCCHHHHHHHHHHhCC
Confidence 34578999999999999999997
No 7
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=23.63 E-value=21 Score=26.87 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=33.5
Q ss_pred HHhhCCCCCChhHHHHHHhccccEEEEEEEE-----ccE--EEEEEEeeecCCCCHHHHHHHHhhc
Q 008004 150 VKRAIPASWDPPSLASFIENFGTHVITSVTI-----GGK--DVIYVKQHQSSPLSTMEIKTYVQDV 208 (581)
Q Consensus 150 F~kaLP~~yd~~~Y~~FIe~YGTHyitsvtL-----GGk--dvi~Vkq~~sS~lt~~evk~cLs~~ 208 (581)
|...||..++..++.+++..||+ |.++.+ -|+ -+-+|.- .+.++.+.|+...
T Consensus 11 ~V~nL~~~~t~~~l~~~F~~~G~--i~~v~i~~d~~tg~~~g~afV~f-----~~~~~A~~A~~~l 69 (88)
T d1rk8a_ 11 FVTSIHEEAQEDEIQEKFCDYGE--IKNIHLNLDRRTGFSKGYALVEY-----ETHKQALAAKEAL 69 (88)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTTTSSEEEEEEEEE-----SSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHcCC--cccccccccccccccccceeEEE-----CCHHHHHHHHHHc
Confidence 44678999999999999999997 444433 133 1223311 2467777777643
No 8
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.64 E-value=69 Score=24.43 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=38.2
Q ss_pred HHhhCCCCCChhHHHHHHhccccEEEEEEEEccEEEEEEEeeecCCCCHHHHHHHHhhccceeEe
Q 008004 150 VKRAIPASWDPPSLASFIENFGTHVITSVTIGGKDVIYVKQHQSSPLSTMEIKTYVQDVGNQRFS 214 (581)
Q Consensus 150 F~kaLP~~yd~~~Y~~FIe~YGTHyitsvtLGGkdvi~Vkq~~sS~lt~~evk~cLs~~a~~~f~ 214 (581)
|...||...+..++.+++..||+=....+..-|. .+|.- .+.++.+.|++..-...|.
T Consensus 19 ~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~~g~--afV~f-----~~~~~a~~Ai~~lng~~~~ 76 (98)
T d1wg4a_ 19 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGM--GMVEY-----LRKEDMEYALRKLDDTKFR 76 (98)
T ss_dssp EEECCCSSCCHHHHHHHHTTSSCEEEEEEETTTE--EEEEE-----SSHHHHHHHHHHHSSEEEE
T ss_pred EEECCCCCCCHHHHHHHHHhhcccccccccccce--EEEEE-----CCHHHHHHHHHHhCCCEeC
Confidence 3457899999999999999999844444433333 22211 2678888888765444453
No 9
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.22 E-value=26 Score=26.75 Aligned_cols=52 Identities=17% Similarity=0.371 Sum_probs=35.6
Q ss_pred HHhhCCCCCChhHHHHHHhccccEEEEEEEE------ccE--EEEEEEeeecCCCCHHHHHHHHhhc
Q 008004 150 VKRAIPASWDPPSLASFIENFGTHVITSVTI------GGK--DVIYVKQHQSSPLSTMEIKTYVQDV 208 (581)
Q Consensus 150 F~kaLP~~yd~~~Y~~FIe~YGTHyitsvtL------GGk--dvi~Vkq~~sS~lt~~evk~cLs~~ 208 (581)
|...||...+..++.+++..||. |.++.| -|+ -+-+|.- .+.++.++|+...
T Consensus 12 ~V~nLp~~~~e~~l~~~F~~~G~--i~~v~i~~~~~~~g~~rg~afV~f-----~~~~~A~~Ai~~l 71 (94)
T d2cpha1 12 LVRNIPFQANQREIRELFSTFGE--LKTVRLPKKMTGTGAHRGFGFVDF-----ITKQDAKKAFNAL 71 (94)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSC--EEEEECCCCCSSSCSSCSEEEEEE-----SSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHhCC--ceEEEEEeccccCCCcccEEEEEE-----CCHHHHHHHHHHc
Confidence 55689999999999999999996 556555 233 1223321 2567788887654
No 10
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.96 E-value=30 Score=26.25 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=34.2
Q ss_pred HHhhCCCCCChhHHHHHHhccccEEEEEEEE-----ccEEEEEEEeeecCCCCHHHHHHHHhhccc
Q 008004 150 VKRAIPASWDPPSLASFIENFGTHVITSVTI-----GGKDVIYVKQHQSSPLSTMEIKTYVQDVGN 210 (581)
Q Consensus 150 F~kaLP~~yd~~~Y~~FIe~YGTHyitsvtL-----GGkdvi~Vkq~~sS~lt~~evk~cLs~~a~ 210 (581)
|...||..++..++.+++..||+ |.++.+ |.+-+-+|.- .+.++.++|++..-.
T Consensus 15 ~v~nLp~~~t~~~L~~~F~~~G~--v~~v~~~~~~~~~kg~afV~f-----~~~~~a~~Ai~~l~~ 73 (93)
T d2cq3a1 15 HVSNIPFRFRDPDLRQMFGQFGK--ILDVEIIFNERGSKGFGFVTF-----ENSADADRAREKLHG 73 (93)
T ss_dssp EEESCCTTCCHHHHHHHGGGTSC--EEEEEEECCTTTTCCEEEEEE-----SCHHHHHHHHHHHTT
T ss_pred EEECCCCCCCHHHHHHHHhhcce--eeeccccccccCCcceeEEEE-----CCHHHHHHHHHHcCC
Confidence 45679999999999999999997 333332 1111222211 257888888865433
Done!