BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008005
(581 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 89
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 380 DKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 150 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 267
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 268 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 327
Query: 555 RIWGLD 560
++W D
Sbjct: 328 KLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 91
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 152 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 210
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 211 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 269
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 270 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 329
Query: 555 RIWGLD 560
++W D
Sbjct: 330 KLWKSD 335
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 68
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 129 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 188 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 246
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 247 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 306
Query: 555 RIWGLD 560
++W D
Sbjct: 307 KLWKSD 312
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 73
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 251
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
Query: 555 RIWGLD 560
++W D
Sbjct: 312 KLWKSD 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 73
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 251
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
Query: 555 RIWGLD 560
++W D
Sbjct: 312 KLWKSD 317
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 72
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 133 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 192 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 250
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 251 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 310
Query: 555 RIWGLD 560
++W D
Sbjct: 311 KLWKSD 316
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 84
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 145 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 204 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 262
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 263 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 322
Query: 555 RIWGLD 560
++W D
Sbjct: 323 KLWKSD 328
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 73
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 251
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
Query: 555 RIWGLD 560
++W D
Sbjct: 312 KLWKSD 317
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 67
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 245
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305
Query: 555 RIWGLD 560
++W D
Sbjct: 306 KLWKSD 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 63
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 124 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 241
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 242 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 301
Query: 555 RIWGLD 560
++W D
Sbjct: 302 KLWKSD 307
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 66
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 127 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 244
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 245 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 304
Query: 555 RIWGLD 560
++W D
Sbjct: 305 KLWKSD 310
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 67
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 245
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305
Query: 555 RIWGLD 560
++W D
Sbjct: 306 KLWKSD 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 156/306 (50%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 70
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G L++ +S + DG I+S + + D + +
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ ++ LW S K + Y GHK ++ I + F
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 248
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 555 RIWGLD 560
++W D
Sbjct: 309 KLWKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 155/306 (50%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 70
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G L++ +S + DG I+S + + D + +
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 248
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 555 RIWGLD 560
++W D
Sbjct: 309 KLWKSD 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LA+SS D+ IW DG+ + +SGH+
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGA-YDGK--FEKTISGHKLG 70
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 380 DKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 248
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 555 RIWGLD 560
++W D
Sbjct: 309 KLWKSD 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 70
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 380 DKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 248
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 555 RIWGLD 560
+++ D
Sbjct: 309 KLYKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 70
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 380 DKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 248
Query: 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+I SGSED+ VYIW+ T E+V L GH+ V + +P N+ A+ +D+TI
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 555 RIWGLD 560
+++ D
Sbjct: 309 KLFKSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 147/291 (50%), Gaps = 14/291 (4%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
LEAHS V + FS DG+ +AS+S D++ +W +GQ L L+GH V+ V++SP
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQ--LLQTLTGHSSSVWGVAFSP 67
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387
+ + + ++ ++ W+ N G+ L + + DG I + DK++ LW+
Sbjct: 68 DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN-FERWIEEEEVITS 446
+G+ L++ G + + +A + DG+ I S + + L +R + +
Sbjct: 127 RNGQLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 185
Query: 447 FSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506
+ S D + + ++ + LW + +L+ GH + +R + IAS S
Sbjct: 186 VAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSS---VRGVAFSPDGQTIASAS 240
Query: 507 EDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+D V +W+R G+L+ L GHS SVN V++ P + +ASASDD+T+++W
Sbjct: 241 DDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLW 289
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 148/296 (50%), Gaps = 14/296 (4%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
Q LQ L HS VW + FS DG+ +AS+S D++ +W +GQ L L+GH V
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQ--LLQTLTGHSSSVRG 103
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382
V++SP+ + + ++ ++ W+ N G+ L + + DG I + DK+
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 162
Query: 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN-FERWIEEE 441
+ LW+ +G+ L++ G + + +A + DG+ I S + + L +R +
Sbjct: 163 VKLWNRNGQLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 221
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501
+ + S D + + ++ + LW + +L+ GH + V F Q
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSS--VNGVAFRPDGQT- 276
Query: 502 IASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
IAS S+D V +W+R G+L+ L GHS SV V+++P + +ASASDD+T+++W
Sbjct: 277 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLW 330
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 148/296 (50%), Gaps = 14/296 (4%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
Q LQ L HS V + F DG+ +AS+S D++ +W +GQ L L+GH V+
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN--RNGQ--LLQTLTGHSSSVWG 308
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382
V++SP+ + + ++ ++ W+ N G+ L + + DG I + DK+
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 367
Query: 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN-FERWIEEE 441
+ LW+ +G+ L++ G + + +A + DG+ I S + + L +R +
Sbjct: 368 VKLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 426
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501
+ + S D++ + ++ + LW + +L+ GH + +R +
Sbjct: 427 SSVWGVAFSPDDQTIASASDDKTVKLW--NRNGQLLQTLTGHSSS---VRGVAFSPDGQT 481
Query: 502 IASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
IAS S+D V +W+R G+L+ L GHS SV V+++P + +ASASDD+T+++W
Sbjct: 482 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW 535
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 146/296 (49%), Gaps = 14/296 (4%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
Q LQ L HS VW + FS DG+ +AS+S D++ +W +GQ L+GH V+
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQ--HLQTLTGHSSSVWG 349
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382
V++SP+ + + ++ ++ W+ N G+ L + + DG I + DK+
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408
Query: 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEE 441
+ LW+ +G+ L++ G + + +A + D + I S + + L +R +
Sbjct: 409 VKLWNRNGQLLQTLTGHSS-SVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS 467
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501
+ + S D + + ++ + LW + +L+ GH + +R +
Sbjct: 468 SSVRGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSS---VRGVAFSPDGQT 522
Query: 502 IASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
IAS S+D V +W+R G+L+ L GHS SV V+++P + +ASAS D+T+++W
Sbjct: 523 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLW 576
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 131/277 (47%), Gaps = 14/277 (5%)
Query: 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL 369
++RL H V V++SP+ + + ++ ++ W+ N G+ L + +
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP 67
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DG I + DK++ LW+ +G+ L++ G + + +A + DG+ I S + + L +
Sbjct: 68 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 430 REAN-FERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488
R + + + S D + + ++ + LW + +L+ GH + +
Sbjct: 127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVW 184
Query: 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASA 548
+ F Q IAS S+D V +W+R G+L+ L GHS SV V+++P + +ASA
Sbjct: 185 GV--AFSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASA 239
Query: 549 SDDRTIRIWG----LDQINMKHRDQSNGIVHHCNGRI 581
SDD+T+++W L Q H NG+ +G+
Sbjct: 240 SDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQT 276
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 151/338 (44%), Gaps = 56/338 (16%)
Query: 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS-LKHRLSGHRKP---------- 319
H+ V ++FS+DG+YLA+ +++ ++ V + V+ L + ++ P
Sbjct: 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 320 ----VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIF 375
+ +V +SP+ L T ++ IR WD+ + + + + + + S +F G +
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 376 AGMTDKSICLWDLDGRELESWKGQKTLRISDMAIT-----DDGKRIISICREAAILLLDR 430
+G D+++ +WD L + + TL I D T DGK I + + A+ + D
Sbjct: 182 SGSGDRTVRIWD-----LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 431 EANF--ERWIEEEE-------VITSFSLSKDNKYLLVNLINQEIHLWSIE-----SDPKL 476
E F ER E E + S ++D + ++ +++ + LW+++ SD K
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296
Query: 477 VS------RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSG 530
+ Y GHK FV+ S +I SGS+D V W + +G +L L GH
Sbjct: 297 PNSGTCEVTYIGHK--DFVL-SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 353
Query: 531 SV------NCVSWNPANLHMLASASDDRTIRIWGLDQI 562
SV N S P ++ A+ S D RIW +I
Sbjct: 354 SVISVAVANGSSLGP-EYNVFATGSGDCKARIWKYKKI 390
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 501 FIASGSEDSQVYIWHRYTGELVLAL-------AGHSGSVNCVSWNPANLHMLASASDDRT 553
+IA+GS D V +W TG LV L GH SV V + + + S S DR+
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRS 279
Query: 554 IRIWGLDQINMK 565
+++W L N K
Sbjct: 280 VKLWNLQNANNK 291
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 126/258 (48%), Gaps = 19/258 (7%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
LE HS V + S++G + S+S D S +W + ++GQ +++ GH K V +V++SP
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL-QNGQC--QYKFLGHTKDVLSVAFSP 119
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG-VGLISCGWF---LDGGGIFAGMTDKSI 383
++ Q+++ G++ A+R W+V GEC+H + +SC F LD I +G D +
Sbjct: 120 DNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 384 CLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD---REANFERWIE 439
+WDL GR + KG T ++ + ++ DG S ++ L D EA E +
Sbjct: 179 KVWDLATGRLVTDLKGH-TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE--MA 235
Query: 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG---G 496
I S N+Y + + I ++ +E+ +V H+ ++ ++ C
Sbjct: 236 AGAPINQICFSP-NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWS 294
Query: 497 FEQAFIASGSEDSQVYIW 514
+ + + SG D+ + +W
Sbjct: 295 ADGSTLYSGYTDNVIRVW 312
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 113/281 (40%), Gaps = 50/281 (17%)
Query: 287 LASSSKDQSAIIWEVKEDGQVS------LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340
+ S+S+D++ + W D S RL GH V V+ S N + ++ + +
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK 400
+R W++ +G+C + + ++S + D I +G D ++ +W++ KG+
Sbjct: 91 LRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV--------KGEC 142
Query: 401 TLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNL 460
+S A TD W+ FS S D ++
Sbjct: 143 MHTLSRGAHTD-------------------------WVS----CVRFSPSLDAPVIVSGG 173
Query: 461 INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520
+ + +W + + +LV+ KGH + S + + AS +D +W GE
Sbjct: 174 WDNLVKVWDLATG-RLVTDLKGHTN---YVTSVTVSPDGSLCASSDKDGVARLWDLTKGE 229
Query: 521 LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561
+ +A +N + ++P M A+ ++ IRI+ L+
Sbjct: 230 ALSEMAA-GAPINQICFSPNRYWMCAAT--EKGIRIFDLEN 267
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 141/310 (45%), Gaps = 29/310 (9%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
++ H+D V+ FS DG+ +AS D++ +++ E G+ L + H V ++S
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA-ETGEKLLD--IKAHEDEVLCCAFS 666
Query: 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG---IFAGMTDKSI 383
+D + TC ++ ++ WD +G+ +H Y++ ++C F + + G D +
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFL 725
Query: 384 CLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD-REANFERWI---- 438
LWDL+ +E + T ++ + D + + S + + L D R AN + I
Sbjct: 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785
Query: 439 ----------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488
+ E ++ S S D ++V N+ + L+ I + L + GH
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHST-- 842
Query: 489 VIRSC-FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547
I+ C F ++ + + S+ V +W+ + V GH V+ V ++P L +
Sbjct: 843 -IQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-T 899
Query: 548 ASDDRTIRIW 557
ASDD+TIR+W
Sbjct: 900 ASDDQTIRVW 909
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 449 LSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508
S+D + + ++ + ++ E+ KL+ K H+ + C + ++IA+ S D
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLD-IKAHEDE---VLCCAFSSDDSYIATCSAD 678
Query: 509 SQVYIWHRYTGELVLALAGHSGSVNCVSW-NPANLHMLASASDDRTIRIWGLDQ 561
+V IW TG+LV HS VNC + N +N +LA+ S+D +++W L+Q
Sbjct: 679 KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 30/195 (15%)
Query: 390 GRELESWKGQKTLR-------------ISDMAITDDGKRIISICREAAILLLDREANFER 436
GR W +KT++ + + DG+RI S + + + E E+
Sbjct: 591 GRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-EK 649
Query: 437 WIE----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR----ARF 488
++ E+EV+ + S D+ Y+ ++++ +W + KLV Y H F
Sbjct: 650 LLDIKAHEDEVLCC-AFSSDDSYIATCSADKKVKIWD-SATGKLVHTYDEHSEQVNCCHF 707
Query: 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASA 548
+S +A+GS D + +W E + GH+ SVN ++P + +LAS
Sbjct: 708 TNKS-----NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASC 761
Query: 549 SDDRTIRIWGLDQIN 563
S D T+R+W + N
Sbjct: 762 SADGTLRLWDVRSAN 776
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 122/300 (40%), Gaps = 35/300 (11%)
Query: 278 LQFSHDGKYLASSSKDQSAIIWEVK---EDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT 334
+ FS DG ++S DQ+ +WE K ++ + LK + V + N+ +L
Sbjct: 888 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID--------VVFQENETMVLA 939
Query: 335 CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA-GMTDKSICLWDL-DGRE 392
++ +G+ ++ E +SC A G D +I + +L + R
Sbjct: 940 VDNIRGLQLIAGKTGQIDYLPEAQ----VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 995
Query: 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE-EEEVITSFSLSK 451
S G K + + T DGK +IS ++ I + + + +++ +E + F L +
Sbjct: 996 FSSGVGHKK-AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ 1054
Query: 452 DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF-----VIRSCFGGFEQAFIASGS 506
D++ L WS + K+ + G F + SC + +S S
Sbjct: 1055 DSRLL----------SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS 1104
Query: 507 EDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH 566
D IW + L GH+G V C +++ + +LA+ D+ IRIW + + H
Sbjct: 1105 ADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI-LLATGDDNGEIRIWNVSDGQLLH 1163
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317
N I + + H V S D +S+S D++A IW +S H L GH
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LLSPLHELKGHN 1127
Query: 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353
V ++S + L T IR W+V+ G+ LH
Sbjct: 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H V +QF+ DGK L SSS+D +W + V L+ H++ V D
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRL-LQD 1055
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389
+LL+ + ++ W+V +G + ++SC D + DK+ +W D
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 141/310 (45%), Gaps = 29/310 (9%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
++ H+D V+ FS DG+ +AS D++ +++ E G+ L + H V ++S
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA-ETGEKLLD--IKAHEDEVLCCAFS 673
Query: 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG---IFAGMTDKSI 383
+D + TC ++ ++ WD +G+ +H Y++ ++C F + + G D +
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFL 732
Query: 384 CLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD-REANFERWI---- 438
LWDL+ +E + T ++ + D + + S + + L D R AN + I
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 792
Query: 439 ----------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488
+ E ++ S S D ++V N+ + L+ I + L + GH
Sbjct: 793 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHST-- 849
Query: 489 VIRSC-FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547
I+ C F ++ + + S+ V +W+ + V GH V+ V ++P L +
Sbjct: 850 -IQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-T 906
Query: 548 ASDDRTIRIW 557
ASDD+TIR+W
Sbjct: 907 ASDDQTIRVW 916
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 449 LSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508
S+D + + ++ + ++ E+ KL+ K H+ + C + ++IA+ S D
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLD-IKAHEDE---VLCCAFSSDDSYIATCSAD 685
Query: 509 SQVYIWHRYTGELVLALAGHSGSVNCVSW-NPANLHMLASASDDRTIRIWGLDQ 561
+V IW TG+LV HS VNC + N +N +LA+ S+D +++W L+Q
Sbjct: 686 KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 739
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 30/195 (15%)
Query: 390 GRELESWKGQKTLR-------------ISDMAITDDGKRIISICREAAILLLDREANFER 436
GR W +KT++ + + DG+RI S + + + E E+
Sbjct: 598 GRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-EK 656
Query: 437 WIE----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR----ARF 488
++ E+EV+ + S D+ Y+ ++++ +W + KLV Y H F
Sbjct: 657 LLDIKAHEDEVLCC-AFSSDDSYIATCSADKKVKIWD-SATGKLVHTYDEHSEQVNCCHF 714
Query: 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASA 548
+S +A+GS D + +W E + GH+ SVN ++P + +LAS
Sbjct: 715 TNKS-----NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASC 768
Query: 549 SDDRTIRIWGLDQIN 563
S D T+R+W + N
Sbjct: 769 SADGTLRLWDVRSAN 783
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 122/300 (40%), Gaps = 35/300 (11%)
Query: 278 LQFSHDGKYLASSSKDQSAIIWEVK---EDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT 334
+ FS DG ++S DQ+ +WE K ++ + LK + V + N+ +L
Sbjct: 895 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID--------VVFQENETMVLA 946
Query: 335 CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA-GMTDKSICLWDL-DGRE 392
++ +G+ ++ E +SC A G D +I + +L + R
Sbjct: 947 VDNIRGLQLIAGKTGQIDYLPEAQ----VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 1002
Query: 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE-EEEVITSFSLSK 451
S G K + + T DGK +IS ++ I + + + +++ +E + F L +
Sbjct: 1003 FSSGVGHKK-AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ 1061
Query: 452 DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF-----VIRSCFGGFEQAFIASGS 506
D++ L WS + K+ + G F + SC + +S S
Sbjct: 1062 DSRLL----------SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS 1111
Query: 507 EDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH 566
D IW + L GH+G V C +++ + +LA+ D+ IRIW + + H
Sbjct: 1112 ADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI-LLATGDDNGEIRIWNVSDGQLLH 1170
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317
N I + + H V S D +S+S D++A IW +S H L GH
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LLSPLHELKGHN 1134
Query: 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353
V ++S + L T IR W+V+ G+ LH
Sbjct: 1135 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H V +QF+ DGK L SSS+D +W + V L+ H++ V D
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRL-LQD 1062
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389
+LL+ + ++ W+V +G + ++SC D + DK+ +W D
Sbjct: 1063 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1122
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 139/320 (43%), Gaps = 27/320 (8%)
Query: 256 GRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315
+ I + + ++ H+D V+ FS DG+ +AS D++ +++ E G+ L+ +
Sbjct: 605 NKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKA-ETGEKLLE--IKA 661
Query: 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG-- 373
H V ++S +D + TC ++ ++ W+ +GE +H Y++ ++C F +
Sbjct: 662 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQ-VNCCHFTNSSHHL 720
Query: 374 -IFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432
+ G +D + LWDL+ +E + T ++ + D K + S + + L D +
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 433 --------------NFERWIEEEEVIT-SFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477
N E E+ EVI S S D ++V N+ I L+ I + L
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLG 839
Query: 478 SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSW 537
+ GH I+ C + V +W+ + V GH V+ V +
Sbjct: 840 EIHTGHHST---IQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMF 896
Query: 538 NPANLHMLASASDDRTIRIW 557
+P L S SDD+TIR+W
Sbjct: 897 SPDGSSFLTS-SDDQTIRLW 915
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 490 IRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLH-MLASA 548
+ C + FIA+ S D +V IW+ TGELV HS VNC + ++ H +LA+
Sbjct: 666 VLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATG 725
Query: 549 SDDRTIRIWGLDQ 561
S D +++W L+Q
Sbjct: 726 SSDCFLKLWDLNQ 738
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 37/301 (12%)
Query: 278 LQFSHDGKYLASSSKDQSAIIWEVK---EDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT 334
+ FS DG +SS DQ+ +WE K ++ V LK + V + N+ +L
Sbjct: 894 VMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVD--------VVFQENEVMVLA 945
Query: 335 CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE 394
+ IRR + +G + T + C I G + +I + +L +
Sbjct: 946 V---DHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIF 1002
Query: 395 SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE-EEEVITSFSLSKDN 453
+ Q + + T D K +IS +A I + + + + ++ +E + F L K++
Sbjct: 1003 QSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNS 1062
Query: 454 KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFV-----IRSCFGGFEQAFIASGSED 508
+ L WS + K+ + G+K FV + SC + +S S D
Sbjct: 1063 RLL----------SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSAD 1112
Query: 509 SQVYIWHRYTGELVLA---LAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565
IW + +L+L L GH+G V C +++ + +LA+ D+ IRIW + +
Sbjct: 1113 KTAKIW---SFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNGEIRIWNVSNGELL 1168
Query: 566 H 566
H
Sbjct: 1169 H 1169
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 408 AITDDGKRIISICREAAILLLDREANFERWIE----EEEVITSFSLSKDNKYLLVNLINQ 463
++DG+RI S + + + E E+ +E E+EV+ + S D++++ +++
Sbjct: 628 CFSEDGQRIASCGADKTLQVFKAETG-EKLLEIKAHEDEVLCC-AFSTDDRFIATCSVDK 685
Query: 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCF--GGFEQAFIASGSEDSQVYIWHRYTGEL 521
++ +W+ + +LV Y H + C +A+GS D + +W E
Sbjct: 686 KVKIWNSMTG-ELVHTYDEHSEQ---VNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKEC 741
Query: 522 VLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563
+ GH+ SVN ++P + +LAS S D T+++W N
Sbjct: 742 RNTMFGHTNSVNHCRFSPDD-KLLASCSADGTLKLWDATSAN 782
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Query: 233 QRDSCLF---HNTSDSDFSLYSDHQCGR----------NRIPSQTLQILEAHSDEVWFLQ 279
Q D C+F H + DF L + + N I + H V
Sbjct: 1039 QLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCD 1098
Query: 280 FSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339
SHD +S+S D++A IW D + L H L GH V ++S + L T
Sbjct: 1099 ISHDATKFSSTSADKTAKIWSF--DLLLPL-HELRGHNGCVRCSAFSVDSTLLATGDDNG 1155
Query: 340 AIRRWDVNSGECLHV 354
IR W+V++GE LH+
Sbjct: 1156 EIRIWNVSNGELLHL 1170
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317
NRI Q H VW +QF+ D K L SSS D +W + D + L+ GH+
Sbjct: 999 NRIFQSRFQ----HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR----GHQ 1050
Query: 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAG 377
+ V N +LL+ + ++ W++ +G + ++SC D +
Sbjct: 1051 ETVKDFRLLKNS-RLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSST 1109
Query: 378 MTDKSICLWDLD 389
DK+ +W D
Sbjct: 1110 SADKTAKIWSFD 1121
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 123/339 (36%), Gaps = 67/339 (19%)
Query: 268 LEAHSD-EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
+ AH D WFL ++ G LAS D+ IW + D + GH++ V V+WS
Sbjct: 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS 70
Query: 327 PNDHQLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSIC 384
P + L + + W N EC+ E + S W G + DKS+
Sbjct: 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW 130
Query: 385 LWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVI 444
+W++D E + ++ L + T D K ++ + + + + + EEE
Sbjct: 131 VWEVD--EEDEYECVSVLN----SHTQDVKHVVWHPSQELLASASYDDTVKLYREEE--- 181
Query: 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDP---KLVSRYKGHKRARFVIRSCFGGFEQAF 501
D+ L E +WS+ DP +L S R + R G EQ
Sbjct: 182 -------DDWVCCATLEGHESTVWSLAFDPSGQRLAS--CSDDRTVRIWRQYLPGNEQGV 232
Query: 502 IASGSEDSQVYI---------------WHRYTGELVLALA-------------------- 526
SGS+ S I W + TG L A
Sbjct: 233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF 292
Query: 527 --------GHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
HS VNCV+WNP +LAS SDD + W
Sbjct: 293 SLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 134/302 (44%), Gaps = 32/302 (10%)
Query: 266 QILEAHSDEV-WFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS 324
++L+ H D V LQF G + S S D + +W + L GH V+ S
Sbjct: 112 KVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCL---RTLVGHTGGVW--S 164
Query: 325 WSPNDHQLLTCGQEEAIRRWDVNSGECLH-VYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383
D+ +++ + ++ W+ +GEC+H +Y T + C L + +G D ++
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTST--VRC-MHLHEKRVVSGSRDATL 221
Query: 384 CLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEE 442
+WD++ G+ L G + + DG+R++S + + + D E +
Sbjct: 222 RVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH 278
Query: 443 VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE--QA 500
+SL D +++ ++ I +W +E+ + GH+ S G E
Sbjct: 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQ-------SLTSGMELKDN 330
Query: 501 FIASGSEDSQVYIWHRYTGELVLALAG---HSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+ SG+ DS V IW TG+ + L G H +V C+ +N + + ++SDD T+++W
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLW 387
Query: 558 GL 559
L
Sbjct: 388 DL 389
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 128/279 (45%), Gaps = 22/279 (7%)
Query: 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
+ + L+ L H+ VW Q + + S S D++ +W E G+ H L GH
Sbjct: 147 VTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA-ETGECI--HTLYGHTST 201
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
V + ++ ++++ ++ +R WD+ +G+CLHV V + C + DG + +G
Sbjct: 202 VRCMH--LHEKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY-DGRRVVSGAY 257
Query: 380 DKSICLWDLDGRE-LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE-ANFERW 437
D + +WD + L + +G T R+ + DG ++S + +I + D E N
Sbjct: 258 DFMVKVWDPETETCLHTLQGH-TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT 314
Query: 438 IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497
+ + +TS KDN L+ + + +W I++ L + +K V +C F
Sbjct: 315 LTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV--TCLQ-F 370
Query: 498 EQAFIASGSEDSQVYIWHRYTGELVLAL----AGHSGSV 532
+ F+ + S+D V +W TGE + L +G SG V
Sbjct: 371 NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 409
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 501 FIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLH--MLASASDDRTIRIWG 558
I SGS D + +W+ TGE + L GH+ +V C+ +LH + S S D T+R+W
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM-----HLHEKRVVSGSRDATLRVWD 225
Query: 559 LD 560
++
Sbjct: 226 IE 227
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 37/102 (36%)
Query: 502 IASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVS-----------------WNPAN--- 541
+ SGS D+ + +W TG+ + L GH +V CV W+P
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 271
Query: 542 LHML-----------------ASASDDRTIRIWGLDQINMKH 566
LH L S S D +IR+W ++ N H
Sbjct: 272 LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 313
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 35/274 (12%)
Query: 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT------GVGLI 363
K+ LSGHR PV V + P +++ ++ I+ WD +G+ +E+T V I
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDI 156
Query: 364 SCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422
S F G + A + D +I LWD G E +S ++I +G I+S R+
Sbjct: 157 S---FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 213
Query: 423 AAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY 480
I + + + + + + E + ++D + +Q + +W + + + +
Sbjct: 214 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAEL 272
Query: 481 KGHKRARFVI----RSCFGGFEQA-------------FIASGSEDSQVYIWHRYTGELVL 523
+ H+ I S + +A F+ SGS D + +W TG ++
Sbjct: 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 524 ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
L GH V V ++ +L S +DD+T+R+W
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVW 365
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 31/231 (13%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ ++ + H V + +G ++ S+S+D++ +WEV+ V +GHR+ V
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT---FTGHREWVRM 239
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGEC-------LHVY---------------EKTGV 360
V + + + +C ++ +R W V + EC HV E TG
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299
Query: 361 GLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISI 419
G G + +G DK+I +WD+ G L + G + + GK I+S
Sbjct: 300 ETKKSG--KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVLFHSGGKFILSC 356
Query: 420 CREAAILLLDREAN--FERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468
+ + + D + + E +TS K Y++ ++Q + +W
Sbjct: 357 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 132/312 (42%), Gaps = 59/312 (18%)
Query: 248 SLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV 307
++ S+ +CGR+ + Q + S V+ LQ+ D + + S +D + IW+ +
Sbjct: 111 TIESNWRCGRHSL--QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWD---KNTL 163
Query: 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGW 367
K L+GH V + + ++ ++T + +R WDVN+GE L+ ++
Sbjct: 164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR- 220
Query: 368 FLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427
+ G + D+SI +WD+ + TD R + + AA+ +
Sbjct: 221 -FNNGMMVTCSKDRSIAVWDM------------------ASPTDITLRRVLVGHRAAVNV 261
Query: 428 LDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR 487
+D D+KY++ ++ I +W+ S + V GHKR
Sbjct: 262 VD---------------------FDDKYIVSASGDRTIKVWN-TSTCEFVRTLNGHKRGI 299
Query: 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547
++ + + SGS D+ + +W G + L GH V C+ ++ N +++
Sbjct: 300 ACLQ-----YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSG 352
Query: 548 ASDDRTIRIWGL 559
A D + I++W L
Sbjct: 353 AYDGK-IKVWDL 363
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 18/213 (8%)
Query: 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411
+H +T G+ + D I +G+ D +I +WD + E + T + + +
Sbjct: 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQY 181
Query: 412 DGKRIISICREAAILLLDREAN--FERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469
D + II+ ++ + + D I E + L +N ++ ++ I +W
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWD 239
Query: 470 IESDPKLVSR--YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG 527
+ S + R GH+ A V+ F+ +I S S D + +W+ T E V L G
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVV-----DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 294
Query: 528 HSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560
H + C+ + ++ S S D TIR+W ++
Sbjct: 295 HKRGIACLQYRD---RLVVSGSSDNTIRLWDIE 324
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 497 FEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRI 556
++ I SG D+ + IW + T E L GH+GSV C+ ++ ++ + S D T+R+
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE---RVIITGSSDSTVRV 197
Query: 557 WGLDQINMKHRDQSNGIVHHC 577
W ++ M N ++HHC
Sbjct: 198 WDVNTGEML-----NTLIHHC 213
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 11/304 (3%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318
RI +T + L H +++ + + D + L S+S+D IIW+ +V H +
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSS 109
Query: 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTG-VGLISCGWFLDGGGIF 375
V T +++P+ + + G + +++ + G E G G +SC FLD I
Sbjct: 110 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 169
Query: 376 AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435
D + LWD++ + + T + +++ D + +S +A+ L D
Sbjct: 170 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 229
Query: 436 R--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493
R + E I + + + L+ + +D +L++ H I S
Sbjct: 230 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNIICGITSV 287
Query: 494 FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRT 553
+ +G +D +W + LAGH V+C+ + +A+ S D
Sbjct: 288 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSF 346
Query: 554 IRIW 557
++IW
Sbjct: 347 LKIW 350
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/276 (18%), Positives = 101/276 (36%), Gaps = 48/276 (17%)
Query: 288 ASSSKDQSAIIWEVKEDGQVSLKHR--LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345
A + S I + G++ ++ R L GH ++ + W + L++ Q+ + WD
Sbjct: 35 ACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 94
Query: 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS 405
+ +H +++C + G + G D +++L RE +R+S
Sbjct: 95 SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE-------GNVRVS 147
Query: 406 DMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465
G +S C R++++ +++TS +
Sbjct: 148 RELAGHTG--YLSCC---------------RFLDDNQIVTSSG-------------DTTC 177
Query: 466 HLWSIE--SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVL 523
LW IE + + G + S + SG+ D+ +W G
Sbjct: 178 ALWDIETGQQTTTFTGHTGD------VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 231
Query: 524 ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
GH +N + + P N + A+ SDD T R++ L
Sbjct: 232 TFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL 266
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 11/304 (3%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318
RI +T + L H +++ + + D + L S+S+D IIW+ +V H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTG-VGLISCGWFLDGGGIF 375
V T +++P+ + + G + +++ + G E G G +SC FLD I
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
Query: 376 AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435
D + LWD++ + + T + +++ D + +S +A+ L D
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 436 R--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493
R + E I + + + L+ + +D +L++ H I S
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNIICGITSV 276
Query: 494 FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRT 553
+ +G +D +W + LAGH V+C+ + +A+ S D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSF 335
Query: 554 IRIW 557
++IW
Sbjct: 336 LKIW 339
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/276 (18%), Positives = 101/276 (36%), Gaps = 48/276 (17%)
Query: 288 ASSSKDQSAIIWEVKEDGQVSLKHR--LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345
A + S I + G++ ++ R L GH ++ + W + L++ Q+ + WD
Sbjct: 24 ACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 83
Query: 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS 405
+ +H +++C + G + G D +++L RE +R+S
Sbjct: 84 SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE-------GNVRVS 136
Query: 406 DMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465
G +S C R++++ +++TS +
Sbjct: 137 RELAGHTG--YLSCC---------------RFLDDNQIVTSSG-------------DTTC 166
Query: 466 HLWSIE--SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVL 523
LW IE + + G + S + SG+ D+ +W G
Sbjct: 167 ALWDIETGQQTTTFTGHTGD------VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 524 ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
GH +N + + P N + A+ SDD T R++ L
Sbjct: 221 TFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL 255
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 11/304 (3%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318
RI +T + L H +++ + + D + L S+S+D IIW+ +V H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTG-VGLISCGWFLDGGGIF 375
V T +++P+ + + G + +++ + G E G G +SC FLD I
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
Query: 376 AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435
D + LWD++ + + T + +++ D + +S +A+ L D
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 436 R--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493
R + E I + + + L+ + +D +L++ H I S
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNIICGITSV 276
Query: 494 FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRT 553
+ +G +D +W + LAGH V+C+ + +A+ S D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSF 335
Query: 554 IRIW 557
++IW
Sbjct: 336 LKIW 339
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/276 (18%), Positives = 101/276 (36%), Gaps = 48/276 (17%)
Query: 288 ASSSKDQSAIIWEVKEDGQVSLKHR--LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345
A + S I + G++ ++ R L GH ++ + W + L++ Q+ + WD
Sbjct: 24 ACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 83
Query: 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS 405
+ +H +++C + G + G D +++L RE +R+S
Sbjct: 84 SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE-------GNVRVS 136
Query: 406 DMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465
G +S C R++++ +++TS +
Sbjct: 137 RELAGHTG--YLSCC---------------RFLDDNQIVTSSG-------------DTTC 166
Query: 466 HLWSIE--SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVL 523
LW IE + + G + S + SG+ D+ +W G
Sbjct: 167 ALWDIETGQQTTTFTGHTGD------VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 524 ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
GH +N + + P N + A+ SDD T R++ L
Sbjct: 221 TFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL 255
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 11/304 (3%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318
RI +T + L H +++ + + D + L S+S+D IIW+ +V H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTG-VGLISCGWFLDGGGIF 375
V T +++P+ + + G + +++ + G E G G +SC FLD I
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
Query: 376 AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435
D + LWD++ + + T + +++ D + +S +A+ L D
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 436 R--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493
R + E I + + + L+ + +D +L++ H I S
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNIICGITSV 276
Query: 494 FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRT 553
+ +G +D +W + LAGH V+C+ + +A+ S D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSF 335
Query: 554 IRIW 557
++IW
Sbjct: 336 LKIW 339
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/276 (19%), Positives = 101/276 (36%), Gaps = 48/276 (17%)
Query: 288 ASSSKDQSAIIWEVKEDGQVSLKHR--LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345
A + S I + G++ ++ R L GH ++ + W + LL+ Q+ + WD
Sbjct: 24 ACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD 83
Query: 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS 405
+ +H +++C + G + G D +++L RE +R+S
Sbjct: 84 SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE-------GNVRVS 136
Query: 406 DMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465
G +S C R++++ +++TS +
Sbjct: 137 RELAGHTG--YLSCC---------------RFLDDNQIVTSSG-------------DTTC 166
Query: 466 HLWSIE--SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVL 523
LW IE + + G + S + SG+ D+ +W G
Sbjct: 167 ALWDIETGQQTTTFTGHTGD------VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 524 ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
GH +N + + P N + A+ SDD T R++ L
Sbjct: 221 TFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL 255
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 11/304 (3%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318
RI +T + L H +++ + + D + L S+S+D IIW+ +V H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTG-VGLISCGWFLDGGGIF 375
V T +++P+ + + G + +++ + G E G G +SC FLD I
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
Query: 376 AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435
D + LWD++ + + T + +++ D + +S +A+ L D
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 436 R--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493
R + E I + + + L+ + +D +L++ H I S
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNIICGITSV 276
Query: 494 FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRT 553
+ +G +D +W + LAGH V+C+ + +A+ S D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSF 335
Query: 554 IRIW 557
++IW
Sbjct: 336 LKIW 339
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/276 (19%), Positives = 101/276 (36%), Gaps = 48/276 (17%)
Query: 288 ASSSKDQSAIIWEVKEDGQVSLKHR--LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345
A + S I + G++ ++ R L GH ++ + W + LL+ Q+ + WD
Sbjct: 24 ACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD 83
Query: 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS 405
+ +H +++C + G + G D +++L RE +R+S
Sbjct: 84 SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE-------GNVRVS 136
Query: 406 DMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465
G +S C R++++ +++TS +
Sbjct: 137 RELAGHTG--YLSCC---------------RFLDDNQIVTSSG-------------DTTC 166
Query: 466 HLWSIE--SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVL 523
LW IE + + G + S + SG+ D+ +W G
Sbjct: 167 ALWDIETGQQTTTFTGHTGD------VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 524 ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
GH +N + + P N + A+ SDD T R++ L
Sbjct: 221 TFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL 255
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQS 295
S L + DS S+++ + L I+E H +EV + +S+DG YLA+ S+D+S
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130
Query: 296 AIIWEVKEDG-QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344
IWE E G + L H + V V W P++ L + ++ +R W
Sbjct: 131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 441 EEVITSFSLSKDNKYLLVNLINQEIHLWSIES---DPKLVSRYKGHKRARFVIRSCFGGF 497
E + + S D YL ++ + +W + + + +S + H + ++
Sbjct: 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD---VKHVIWHP 163
Query: 498 EQAFIASGSEDSQVYIWHRYTG--ELVLALAGHSGSVNCVSWNPA-NLHMLASASDDRTI 554
+A +AS S D V IW Y E V L GH G+V ++ + L S SDD T+
Sbjct: 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223
Query: 555 RIW 557
R+W
Sbjct: 224 RVW 226
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 111/273 (40%), Gaps = 65/273 (23%)
Query: 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL--SGHRKPVFT 322
++ L+ + +++W FS LA+ S D+ + VK D +L L + H+K + +
Sbjct: 7 IKSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYD-DFTLIDVLDETAHKKAIRS 63
Query: 323 VSWSPNDHQLLTCG-----------QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371
V+W P+ LL G +E A R ++++ + +E G+ W DG
Sbjct: 64 VAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV---AWSNDG 119
Query: 372 GGIFAGMTDKSICLWDLD--GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
+ DKS+ +W+ D G E E IS+ +E +
Sbjct: 120 YYLATCSRDKSVWIWETDESGEEYEC---------------------ISVLQEHS----- 153
Query: 430 REANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW-SIESDPKLVSRYKGHKRARF 488
++ W E ++ S S + + +W + D + V+ GH+
Sbjct: 154 QDVKHVIWHPSEALLASSSY------------DDTVRIWKDYDDDWECVAVLNGHEGT-- 199
Query: 489 VIRSCFGGFEQAF-IASGSEDSQVYIWHRYTGE 520
V S F E F + SGS+DS V +W +Y G+
Sbjct: 200 VWSSDFDKTEGVFRLCSGSDDSTVRVW-KYMGD 231
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 11/211 (5%)
Query: 374 IFAGMTDKSICLWDLDGRELESWKGQKTLR-----ISDMAITDDGKRIISICREAAILLL 428
I + DKSI LW L + Q+ L + D+ ++ DG+ +S + + L
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 429 DREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI--ESDPKLVSRYKGHK 484
D A R++ + + S + S DN+ ++ ++ I LW+ E + +GH+
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 485 RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHM 544
+R Q I S S D V +W+ +L LAGH+G V+ V+ +P + +
Sbjct: 518 DWVSCVRFSPNTL-QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSL 575
Query: 545 LASASDDRTIRIWGLDQINMKHRDQSNGIVH 575
AS D + +W L + + ++N ++H
Sbjct: 576 CASGGKDGVVLLWDLAEGKKLYSLEANSVIH 606
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 42/204 (20%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H+ +V + FS D + + S+S+D++ +W + + ++ GHR V V +SPN
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389
Q ++S W DK++ +W+L
Sbjct: 530 LQPT----------------------------IVSASW------------DKTVKVWNLS 549
Query: 390 GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERW-IEEEEVITSFS 448
+L S T +S +A++ DG S ++ +LL D + + +E VI +
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 609
Query: 449 LSKDNKYLLVNLINQEIHLWSIES 472
S N+Y L I +W +ES
Sbjct: 610 FSP-NRYWLCAATEHGIKIWDLES 632
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 125/296 (42%), Gaps = 45/296 (15%)
Query: 268 LEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVS--LKHRLSGHRKPVFTVS 324
+ AH+D V + D + S+S+D+S I+W++ +D + + RL+GH V V
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 325 WSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSIC 384
S + L+ + +R WD+ +G + ++S + LD I + D++I
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 385 LWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVI 444
LW+ TL I++ G+ W+
Sbjct: 498 LWN-------------TLGECKYTISEGGE------------------GHRDWVS----C 522
Query: 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504
FS + ++ ++ + +W++ S+ KL S GH + G + AS
Sbjct: 523 VRFSPNTLQPTIVSASWDKTVKVWNL-SNCKLRSTLAGHTGYVSTVAVSPDG---SLCAS 578
Query: 505 GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560
G +D V +W G+ + +L +S ++ + ++P N + L +A+ + I+IW L+
Sbjct: 579 GGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSP-NRYWLCAAT-EHGIKIWDLE 631
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 24/140 (17%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L H+ V + S DG AS KD ++W++ E ++ + L + + + +SP
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL---YSLEANSV-IHALCFSP 612
Query: 328 NDHQLLTCGQEEAIRRWDVNSG---ECLHVYEK-------------TGVGLISC---GWF 368
N + L E I+ WD+ S E L V K T +I C W
Sbjct: 613 NRY-WLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671
Query: 369 LDGGGIFAGMTDKSICLWDL 388
DG +F+G TD I +W +
Sbjct: 672 ADGSTLFSGYTDGVIRVWGI 691
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/339 (21%), Positives = 132/339 (38%), Gaps = 55/339 (16%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--------------EDGQV-------- 307
AHS V+ L +S DG +AS+S D++ IW V ED Q+
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296
Query: 308 ------------------SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349
S+ GH K + +S S + L + E I WD+++G
Sbjct: 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Query: 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISD--- 406
V+ +I+ G +F D + + G ++S K S
Sbjct: 357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416
Query: 407 MAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466
+A++ DG ++ C + I + E I + +LS D +++ V + ++H
Sbjct: 417 LAVSADGDIAVAACYKH-IAIYSHGKLTEVPISYNS--SCVALSNDKQFVAVGGQDSKVH 473
Query: 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA 526
++ + VS K + F AF+ + ++ S+ I + LA
Sbjct: 474 VYKLSG--ASVSEVKTIVHPAEITSVAFSN-NGAFLVA-TDQSRKVIPYSVANNFELAHT 529
Query: 527 G----HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561
H+ V CVSW+P N+ LA+ S D ++ +W +++
Sbjct: 530 NSWTFHTAKVACVSWSPDNVR-LATGSLDNSVIVWNMNK 567
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 15/197 (7%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346
+ S S D + I+E K H K V +V ++P+ + G + I ++
Sbjct: 163 IISGSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219
Query: 347 NSGECLHVYEKTGV-------GLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ 399
G V+E + + W DG I + DK+I +W++ ++E
Sbjct: 220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279
Query: 400 KTLRISD--MAITDDGKRIISICREAAILLLDREANFERWIE--EEEVITSFSLSKDNKY 455
T RI D + I + ++SI I ++ E + + IT+ S S D K
Sbjct: 280 GT-RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT 338
Query: 456 LLVNLINQEIHLWSIES 472
L I+ W I +
Sbjct: 339 LFSADAEGHINSWDIST 355
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWE--------VKEDGQVSLKHRLSGHRKPVFT 322
H+ V ++++ DG AS+ D + +++ V ED SLK+ H VF
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD--SLKNV--AHSGSVFG 244
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDV 346
++WSP+ ++ + ++ I+ W+V
Sbjct: 245 LTWSPDGTKIASASADKTIKIWNV 268
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 528 HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565
HSGSV ++W+P +ASAS D+TI+IW + + ++
Sbjct: 238 HSGSVFGLTWSPDGTK-IASASADKTIKIWNVATLKVE 274
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 247 FSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ 306
+ LY + Q G IP + L H+ V L S + + SSS D++ +W+++
Sbjct: 54 WKLYEEEQNGYFGIPHKALT---GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG-- 108
Query: 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351
+ R GH+ V++V++SP++ Q+L+ G E I+ W++ GEC
Sbjct: 109 -TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGEC 151
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 19/220 (8%)
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKG--QKTLR-----ISDMAITDDGKRIISICRE 422
D + +G DK++ +W L E + G K L +SD+A++ + IS +
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 423 AAILLLDREA--NFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY 480
+ L D ++R++ + + S + S DN+ +L +EI LW+I + K S
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157
Query: 481 KGHK-------RARFVIRSCFGGFEQA-FIASGSEDSQVYIWHRYTGELVLALAGHSGSV 532
K + R +++S A + AS D ++ +W+ ++ H +V
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNV 216
Query: 533 NCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQSNG 572
N +S +P N +A+ D+ + IW + + R+ G
Sbjct: 217 NHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREFDAG 255
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 267 ILEAHSDEVWFL--QFSH----DGKYLASSSKDQSAIIWEVKE---DGQVSLKHR-LSGH 316
ILE HSD V + FS D L S S+D++ +IW++ E +G + H+ L+GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA 376
V ++ S + ++ ++ +R WD+ +G + + S + D I +
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 377 GMTDKSICLWDLDG 390
++ I LW++ G
Sbjct: 136 AGAEREIKLWNILG 149
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 256 GRNRIPSQTLQI---LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV 301
GR ++ + QI +AH V L S +GKY+A+ KD+ +IW++
Sbjct: 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 34/221 (15%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L HS V + S DG++ S S D + +W++ + R GH K V +V++S
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSS 138
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYE----------------KTGVGLISCGWFLDG 371
++ Q+++ +++ I+ W+ G C + + + ++SCGW
Sbjct: 139 DNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW---- 193
Query: 372 GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD-R 430
DK + +W+L +L++ T ++ + ++ DG S ++ +L D
Sbjct: 194 --------DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245
Query: 431 EANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471
E ++ ++I + S N+Y L I +W +E
Sbjct: 246 EGKHLYTLDGGDIINALCFSP-NRYWLCAATGPSIKIWDLE 285
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 9/195 (4%)
Query: 374 IFAGMTDKSICLWDLDGRELESWKGQKTLR-----ISDMAITDDGKRIISICREAAILLL 428
I + DK+I +W L E Q+ LR +SD+ I+ DG+ +S + + L
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 429 D--REANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA 486
D R++ + + S + S DN+ ++ ++ I LW+ K + + H
Sbjct: 114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173
Query: 487 RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA 546
+R I S D V +W+ +L GH+G +N V+ +P + A
Sbjct: 174 VSCVRFSPNS-SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-SLCA 231
Query: 547 SASDDRTIRIWGLDQ 561
S D +W L++
Sbjct: 232 SGGKDGQAMLWDLNE 246
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 119/290 (41%), Gaps = 49/290 (16%)
Query: 276 WFLQFSHDGKY---LASSSKDQSAIIWEVKED-GQVSLKHR-LSGHRKPVFTVSWSPNDH 330
W Q + ++ + S+S+D++ I+W++ D + R L GH V V S +
Sbjct: 40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 99
Query: 331 QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390
L+ + +R WD+ +G + ++S + D I +G DK+I LW+ G
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 159
Query: 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLS 450
+C+ ++ + W+ FS +
Sbjct: 160 ----------------------------VCKYTV-----QDESHSEWVS----CVRFSPN 182
Query: 451 KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ 510
N ++ ++ + +W++ ++ KL + + GH + G + ASG +D Q
Sbjct: 183 SSNPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDG---SLCASGGKDGQ 238
Query: 511 VYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560
+W G+ + L G +N + ++P N + L +A+ +I+IW L+
Sbjct: 239 AMLWDLNEGKHLYTLDG-GDIINALCFSP-NRYWLCAATGP-SIKIWDLE 285
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 269 EAHSDEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
E+HS+ V ++FS + + S D+ +W + LK GH + TV+ S
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTNHIGHTGYLNTVTVS 224
Query: 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386
P+ + G++ WD+N G+ H+Y G +I+ F T SI +W
Sbjct: 225 PDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW 282
Query: 387 DLDGR 391
DL+G+
Sbjct: 283 DLEGK 287
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H+ + + S DG AS KD A++W++ E + + L G + + +SPN
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL---YTLDGG-DIINALCFSPNR 268
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG---------LISCGWFLDGGGIFAGMTD 380
+ L +I+ WD+ + ++ + S W DG +FAG TD
Sbjct: 269 Y-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327
Query: 381 KSICLWDL 388
+ +W +
Sbjct: 328 NLVRVWQV 335
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 524 ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQSN 571
L GH+G V ++ P M+ SAS D+TI +W L RD++N
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT------RDETN 74
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--EDGQVSLKHRLSGH 316
R+ + L HS EV L+++ DG++LAS D +W E G V L+ + H
Sbjct: 137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH 195
Query: 317 RKPVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECL 352
+ V V+W P +L G + IR W+V SG CL
Sbjct: 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 94/245 (38%), Gaps = 55/245 (22%)
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV--YEKTGVGLISCGWFLDGGGIFAGMTD 380
V WS + +L + ++ W +SG+ L + E+ G + S W +G + G +
Sbjct: 31 VDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 88
Query: 381 KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEE 440
+ LWD+ + QK LR +T R+ S+ + IL
Sbjct: 89 AEVQLWDV--------QQQKRLR----NMTSHSARVGSLSWNSYIL-------------- 122
Query: 441 EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500
+S S S IH + V+ GH + +R G
Sbjct: 123 ----SSGSRSG------------HIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-- 164
Query: 501 FIASGSEDSQVYIWHRYTGE----LVLALAGHSGSVNCVSWNPANLHMLAS--ASDDRTI 554
+ASG D+ V +W GE + H G+V V+W P ++LA+ + DR I
Sbjct: 165 -LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223
Query: 555 RIWGL 559
RIW +
Sbjct: 224 RIWNV 228
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 107/277 (38%), Gaps = 45/277 (16%)
Query: 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342
+G YLA + +W+V++ ++ ++ H V ++SW N + L + + I
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRL---RNMTSHSARVGSLSW--NSYILSSGSRSGHIH 132
Query: 343 RWDVNSGECLHVYEKTGVGLISCG--WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK 400
DV E HV +G CG W DG + +G D + +W E W +
Sbjct: 133 HHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE-GGWVPLQ 190
Query: 401 TLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNL 460
T A+ + ++ C + +L +R I V + LS + + V
Sbjct: 191 TFTQHQGAV-----KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 245
Query: 461 INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520
I LWS P GH GF Q +Q+ IW T
Sbjct: 246 I-----LWS----PHYKELISGH------------GFAQ---------NQLVIWKYPTMA 275
Query: 521 LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
V L GH+ V ++ +P +ASA+ D T+R+W
Sbjct: 276 KVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLW 311
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 34/221 (15%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L HS V + S DG++ S S D + +W++ + R GH K V +V++S
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSS 115
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYE----------------KTGVGLISCGWFLDG 371
++ Q+++ +++ I+ W+ G C + + + ++SCGW
Sbjct: 116 DNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW---- 170
Query: 372 GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD-R 430
DK + +W+L +L++ T ++ + ++ DG S ++ +L D
Sbjct: 171 --------DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
Query: 431 EANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471
E ++ ++I + S N+Y L I +W +E
Sbjct: 223 EGKHLYTLDGGDIINALCFSP-NRYWLCAATGPSIKIWDLE 262
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 9/195 (4%)
Query: 374 IFAGMTDKSICLWDLDGRELESWKGQKTLR-----ISDMAITDDGKRIISICREAAILLL 428
I + DK+I +W L E Q+ LR +SD+ I+ DG+ +S + + L
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 429 D--REANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA 486
D R++ + + S + S DN+ ++ ++ I LW+ K + + H
Sbjct: 91 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 150
Query: 487 RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA 546
+R I S D V +W+ +L GH+G +N V+ +P + A
Sbjct: 151 VSCVRFSPNS-SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-SLCA 208
Query: 547 SASDDRTIRIWGLDQ 561
S D +W L++
Sbjct: 209 SGGKDGQAMLWDLNE 223
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 119/290 (41%), Gaps = 49/290 (16%)
Query: 276 WFLQFSHDGKY---LASSSKDQSAIIWEVKED-GQVSLKHR-LSGHRKPVFTVSWSPNDH 330
W Q + ++ + S+S+D++ I+W++ D + R L GH V V S +
Sbjct: 17 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 76
Query: 331 QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390
L+ + +R WD+ +G + ++S + D I +G DK+I LW+ G
Sbjct: 77 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 136
Query: 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLS 450
+C+ ++ + W+ FS +
Sbjct: 137 ----------------------------VCKYTV-----QDESHSEWVS----CVRFSPN 159
Query: 451 KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ 510
N ++ ++ + +W++ ++ KL + + GH + G + ASG +D Q
Sbjct: 160 SSNPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDG---SLCASGGKDGQ 215
Query: 511 VYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560
+W G+ + L G +N + ++P N + L +A+ +I+IW L+
Sbjct: 216 AMLWDLNEGKHLYTLDG-GDIINALCFSP-NRYWLCAATGP-SIKIWDLE 262
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 269 EAHSDEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
E+HS+ V ++FS + + S D+ +W + LK GH + TV+ S
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTNHIGHTGYLNTVTVS 201
Query: 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386
P+ + G++ WD+N G+ H+Y G +I+ F T SI +W
Sbjct: 202 PDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW 259
Query: 387 DLDGR 391
DL+G+
Sbjct: 260 DLEGK 264
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H+ + + S DG AS KD A++W++ E + + L G + + +SPN
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL---YTLDGG-DIINALCFSPNR 245
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG---------LISCGWFLDGGGIFAGMTD 380
+ L +I+ WD+ + ++ + S W DG +FAG TD
Sbjct: 246 Y-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 304
Query: 381 KSICLWDL 388
+ +W +
Sbjct: 305 NLVRVWQV 312
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 524 ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQSN 571
L GH+G V ++ P M+ SAS D+TI +W L RD++N
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT------RDETN 51
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--EDGQVSLKHRLSGH 316
R+ + L HS EV L+++ DG++LAS D +W E G V L+ + H
Sbjct: 228 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH 286
Query: 317 RKPVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECL 352
+ V V+W P +L G + IR W+V SG CL
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 55/245 (22%)
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV--YEKTGVGLISCGWFLDGGGIFAGMTD 380
V WS + +L + ++ W +SG+ L + E+ G + S W +G + G +
Sbjct: 122 VDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 179
Query: 381 KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEE 440
+ LWD+ Q+ R+ +M T R+ S+ + IL
Sbjct: 180 AEVQLWDV----------QQQKRLRNM--TSHSARVGSLSWNSYIL-------------- 213
Query: 441 EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500
+S S S IH + V+ GH + +R G
Sbjct: 214 ----SSGSRSG------------HIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-- 255
Query: 501 FIASGSEDSQVYIWHRYTGE----LVLALAGHSGSVNCVSWNPANLHMLAS--ASDDRTI 554
+ASG D+ V +W GE + H G+V V+W P ++LA+ + DR I
Sbjct: 256 -LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 314
Query: 555 RIWGL 559
RIW +
Sbjct: 315 RIWNV 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 115/295 (38%), Gaps = 48/295 (16%)
Query: 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342
+G YLA + +W+V++ ++ ++ H V ++SW N + L + + I
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRL---RNMTSHSARVGSLSW--NSYILSSGSRSGHIH 223
Query: 343 RWDVNSGECLHVYEKTGVGLISCG--WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK 400
DV E HV +G CG W DG + +G D + +W E W +
Sbjct: 224 HHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE-GGWVPLQ 281
Query: 401 TLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNL 460
T A+ + ++ C + +L +R I V + LS + + V
Sbjct: 282 TFTQHQGAV-----KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 336
Query: 461 INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520
I LWS P GH GF Q +Q+ IW T
Sbjct: 337 I-----LWS----PHYKELISGH------------GFAQ---------NQLVIWKYPTMA 366
Query: 521 LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG---LDQINMKHRDQSNG 572
V L GH+ V ++ +P +ASA+ D T+R+W LD + R++++
Sbjct: 367 KVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFELDPARRREREKASA 420
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--EDGQVSLKHRLSGH 316
R+ + L HS EV L+++ DG++LAS D +W E G V L+ + H
Sbjct: 217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH 275
Query: 317 RKPVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECL 352
+ V V+W P +L G + IR W+V SG CL
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 55/245 (22%)
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV--YEKTGVGLISCGWFLDGGGIFAGMTD 380
V WS + +L + ++ W +SG+ L + E+ G + S W +G + G +
Sbjct: 111 VDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 168
Query: 381 KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEE 440
+ LWD+ Q+ R+ +M T R+ S+ + IL
Sbjct: 169 AEVQLWDV----------QQQKRLRNM--TSHSARVGSLSWNSYIL-------------- 202
Query: 441 EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500
+S S S IH + V+ GH + +R G
Sbjct: 203 ----SSGSRSG------------HIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-- 244
Query: 501 FIASGSEDSQVYIWHRYTGE----LVLALAGHSGSVNCVSWNPANLHMLAS--ASDDRTI 554
+ASG D+ V +W GE + H G+V V+W P ++LA+ + DR I
Sbjct: 245 -LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303
Query: 555 RIWGL 559
RIW +
Sbjct: 304 RIWNV 308
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 115/295 (38%), Gaps = 48/295 (16%)
Query: 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342
+G YLA + +W+V++ ++ ++ H V ++SW N + L + + I
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRL---RNMTSHSARVGSLSW--NSYILSSGSRSGHIH 212
Query: 343 RWDVNSGECLHVYEKTGVGLISCG--WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK 400
DV E HV +G CG W DG + +G D + +W E W +
Sbjct: 213 HHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE-GGWVPLQ 270
Query: 401 TLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNL 460
T A+ + ++ C + +L +R I V + LS + + V
Sbjct: 271 TFTQHQGAV-----KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 325
Query: 461 INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520
I LWS P GH GF Q +Q+ IW T
Sbjct: 326 I-----LWS----PHYKELISGH------------GFAQ---------NQLVIWKYPTMA 355
Query: 521 LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG---LDQINMKHRDQSNG 572
V L GH+ V ++ +P +ASA+ D T+R+W LD + R++++
Sbjct: 356 KVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFELDPARRREREKASA 409
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 453 NKYLLVNLINQEIHLWSIESDPK------LVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506
N YLL + I LW I + PK + + GH V + ++ S +
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH--TAVVEDVAWHLLHESLFGSVA 251
Query: 507 EDSQVYIW---HRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563
+D ++ IW + T + + H+ VNC+S+NP + +LA+ S D+T+ +W L +
Sbjct: 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 311
Query: 564 MK------HRDQ 569
+K H+D+
Sbjct: 312 LKLHSFESHKDE 323
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 49/272 (18%)
Query: 305 GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363
G+ RL GH+K + +SW+PN + LL+ + I WD+N+ H
Sbjct: 169 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR--------- 219
Query: 364 SCGWFLDGGGIFAGMTDK-SICLWDLDGREL-ESWKGQKTLRISDMAITDDGKRIISICR 421
+D IF G T W L L S + L I D + K ++
Sbjct: 220 ----VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275
Query: 422 EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481
A E N + E I + + S D L +L N ++ L S ES
Sbjct: 276 HTA------EVNCLSFNPYSEFILA-TGSADKTVALWDLRNLKLKLHSFES--------- 319
Query: 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW--------------HRYTGELVLALAG 527
HK F ++ + + +AS D ++++W EL+ G
Sbjct: 320 -HKDEIFQVQ--WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 376
Query: 528 HSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
H+ ++ SWNP ++ S S+D +++W +
Sbjct: 377 HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 46/224 (20%)
Query: 348 SGEC-----LHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKT 401
SGEC L ++K G GL W + G + + D +ICLWD++ K
Sbjct: 168 SGECQPDLRLRGHQKEGYGL---SWNPNLNGYLLSASDDHTICLWDINAT-------PKE 217
Query: 402 LRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI 461
R+ D G ++ + A LL E+ F S++ D K ++ +
Sbjct: 218 HRVIDAKNIFTGH--TAVVEDVAWHLL-HESLFG------------SVADDQKLMIWDTR 262
Query: 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSC--FGGFEQAFIASGSEDSQVYIWHRYTG 519
N S+ A +C F + + +A+GS D V +W
Sbjct: 263 NNN------------TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310
Query: 520 ELVL-ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562
+L L + H + V W+P N +LAS+ DR + +W L +I
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345
S + DQ +IW+ + + H + H V +S++P +L G ++ + WD
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDL-------------DG 390
+ + + LH +E + W I A TD+ + +WDL DG
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366
Query: 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
EL G T +ISD + + II E I+
Sbjct: 367 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 265 LQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVK-----------EDGQVSLKHR 312
L E+H DE++ +Q+S H+ LASS D+ +W++ EDG L
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
GH + SW+PN+ ++ E+ I +
Sbjct: 374 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 523 LALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567
L L GH +SWNP L SASDD TI +W ++ +HR
Sbjct: 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 219
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 453 NKYLLVNLINQEIHLWSIESDPK------LVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506
N YLL + I LW I + PK + + GH V + ++ S +
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH--TAVVEDVAWHLLHESLFGSVA 253
Query: 507 EDSQVYIW---HRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563
+D ++ IW + T + + H+ VNC+S+NP + +LA+ S D+T+ +W L +
Sbjct: 254 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 313
Query: 564 MK------HRDQ 569
+K H+D+
Sbjct: 314 LKLHSFESHKDE 325
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 49/272 (18%)
Query: 305 GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363
G+ RL GH+K + +SW+PN + LL+ + I WD+N+ H
Sbjct: 171 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR--------- 221
Query: 364 SCGWFLDGGGIFAGMTDK-SICLWDLDGREL-ESWKGQKTLRISDMAITDDGKRIISICR 421
+D IF G T W L L S + L I D + K ++
Sbjct: 222 ----VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 277
Query: 422 EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481
A E N + E I + + S D L +L N ++ L S ES
Sbjct: 278 HTA------EVNCLSFNPYSEFILA-TGSADKTVALWDLRNLKLKLHSFES--------- 321
Query: 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW--------------HRYTGELVLALAG 527
HK F ++ + + +AS D ++++W EL+ G
Sbjct: 322 -HKDEIFQVQ--WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 378
Query: 528 HSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
H+ ++ SWNP ++ S S+D +++W +
Sbjct: 379 HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 46/224 (20%)
Query: 348 SGEC-----LHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKT 401
SGEC L ++K G GL W + G + + D +ICLWD++ K
Sbjct: 170 SGECQPDLRLRGHQKEGYGL---SWNPNLNGYLLSASDDHTICLWDINAT-------PKE 219
Query: 402 LRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI 461
R+ D G ++ + A LL E+ F S++ D K ++ +
Sbjct: 220 HRVIDAKNIFTGH--TAVVEDVAWHLL-HESLFG------------SVADDQKLMIWDTR 264
Query: 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSC--FGGFEQAFIASGSEDSQVYIWHRYTG 519
N S+ A +C F + + +A+GS D V +W
Sbjct: 265 NNN------------TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 312
Query: 520 ELVL-ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562
+L L + H + V W+P N +LAS+ DR + +W L +I
Sbjct: 313 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 356
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345
S + DQ +IW+ + + H + H V +S++P +L G ++ + WD
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDL-------------DG 390
+ + + LH +E + W I A TD+ + +WDL DG
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 368
Query: 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
EL G T +ISD + + II E I+
Sbjct: 369 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 405
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 265 LQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVK-----------EDGQVSLKHR 312
L E+H DE++ +Q+S H+ LASS D+ +W++ EDG L
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 375
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
GH + SW+PN+ ++ E+ I +
Sbjct: 376 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 523 LALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567
L L GH +SWNP L SASDD TI +W ++ +HR
Sbjct: 177 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 221
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 453 NKYLLVNLINQEIHLWSIESDPK------LVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506
N YLL + I LW I + PK + + GH V + ++ S +
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH--TAVVEDVAWHLLHESLFGSVA 255
Query: 507 EDSQVYIW---HRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563
+D ++ IW + T + + H+ VNC+S+NP + +LA+ S D+T+ +W L +
Sbjct: 256 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 315
Query: 564 MK 565
+K
Sbjct: 316 LK 317
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 49/272 (18%)
Query: 305 GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363
G+ RL GH+K + +SW+PN + LL+ + I WD+N+ H
Sbjct: 173 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR--------- 223
Query: 364 SCGWFLDGGGIFAGMTDK-SICLWDLDGREL-ESWKGQKTLRISDMAITDDGKRIISICR 421
+D IF G T W L L S + L I D + K ++
Sbjct: 224 ----VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 279
Query: 422 EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481
A E N + E I + + S D L +L N ++ L S ES
Sbjct: 280 HTA------EVNCLSFNPYSEFILA-TGSADKTVALWDLRNLKLKLHSFES--------- 323
Query: 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW--------------HRYTGELVLALAG 527
HK F ++ + + +AS D ++++W EL+ G
Sbjct: 324 -HKDEIFQVQ--WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 380
Query: 528 HSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
H+ ++ SWNP ++ S S+D +++W +
Sbjct: 381 HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 46/224 (20%)
Query: 348 SGEC-----LHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKT 401
SGEC L ++K G GL W + G + + D +ICLWD++ K
Sbjct: 172 SGECQPDLRLRGHQKEGYGL---SWNPNLNGYLLSASDDHTICLWDINAT-------PKE 221
Query: 402 LRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI 461
R+ D G ++ + A LL E+ F S++ D K ++ +
Sbjct: 222 HRVIDAKNIFTGH--TAVVEDVAWHLL-HESLFG------------SVADDQKLMIWDTR 266
Query: 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSC--FGGFEQAFIASGSEDSQVYIWHRYTG 519
N S+ A +C F + + +A+GS D V +W
Sbjct: 267 NNN------------TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 314
Query: 520 ELVL-ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562
+L L + H + V W+P N +LAS+ DR + +W L +I
Sbjct: 315 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 358
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345
S + DQ +IW+ + + H + H V +S++P +L G ++ + WD
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDL-------------DG 390
+ + + LH +E + W I A TD+ + +WDL DG
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 370
Query: 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
EL G T +ISD + + II E I+
Sbjct: 371 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 407
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 265 LQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVK-----------EDGQVSLKHR 312
L E+H DE++ +Q+S H+ LASS D+ +W++ EDG L
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 377
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
GH + SW+PN+ ++ E+ I +
Sbjct: 378 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 408
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 523 LALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567
L L GH +SWNP L SASDD TI +W ++ +HR
Sbjct: 179 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 223
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 16/184 (8%)
Query: 226 VEKALDVQRDSCLFHN-TSDSDFSLYSDHQCGRNRIPSQTLQI---LEAHSDEVWFLQFS 281
V +A + +++C+ T SD ++ + PS Q L H E + L ++
Sbjct: 135 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN 194
Query: 282 HD-GKYLASSSKDQSAIIWEV----KEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TC 335
+ YL S+S D + +W++ KE + K+ +GH V V+W L +
Sbjct: 195 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 254
Query: 336 GQEEAIRRWDV---NSGECLHVYEKTGVGLISCGWFLDGGGIF--AGMTDKSICLWDLDG 390
++ + WD N+ + H + ++C F G DK++ LWDL
Sbjct: 255 ADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Query: 391 RELE 394
+L+
Sbjct: 314 LKLK 317
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 96/257 (37%), Gaps = 39/257 (15%)
Query: 305 GQVSLKHR--LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362
GQ +K R L GH V + W + ++++ Q+ + WD + H +
Sbjct: 50 GQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWV 109
Query: 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422
++C + G I G D ++ L + E+ +K +
Sbjct: 110 MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK--------------------KS 149
Query: 423 AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482
A+ N+ +++ S + + +L + LW +ES +L+ + G
Sbjct: 150 VAM-----HTNY---------LSACSFTNSDMQILTASGDGTCALWDVES-GQLLQSFHG 194
Query: 483 HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANL 542
H + F+ SG D + +W +G+ V A H VN V + P+
Sbjct: 195 HGADVLCLDLAPSETGNTFV-SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG- 252
Query: 543 HMLASASDDRTIRIWGL 559
AS SDD T R++ L
Sbjct: 253 DAFASGSDDATCRLYDL 269
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 117/308 (37%), Gaps = 65/308 (21%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV--------------------- 301
+T + L+ H ++V + + D + + SSS+D I+W+
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 302 ------------------------KEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ 337
K + + K ++ H + S++ +D Q+LT
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD------GGGIFAGMTDKSICLWDL-DG 390
+ WDV SG+ L + G ++ LD G +G DK +WD+ G
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLC----LDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVI----TS 446
+ +++++ ++ ++ + G S +A L D A+ E I +E I +S
Sbjct: 231 QCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 289
Query: 447 FSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506
S + L + I++W + + VS GH+ +R G AF SGS
Sbjct: 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSR-VSILFGHENRVSTLRVSPDG--TAF-CSGS 345
Query: 507 EDSQVYIW 514
D + +W
Sbjct: 346 WDHTLRVW 353
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 446 SFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505
+ + S D++YL +++++ +ES K Y R +F++ + + ++ASG
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKK---EYSLDTRGKFILSIAYSP-DGKYLASG 182
Query: 506 SEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564
+ D + I+ TG+L+ L GH+ + ++++P + +L +ASDD I+I+ + N+
Sbjct: 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANL 240
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Query: 278 LQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ 337
+ +S DGKYLAS + D I+++ L H L GH P+ ++++SP+ L+T
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397
+ I+ +DV +++ + D + +DKS+ +WD+ R
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLD 429
++ + +G +I+S+ + I + D
Sbjct: 287 FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 134/320 (41%), Gaps = 55/320 (17%)
Query: 269 EAHSDEVWFLQFSHDGK----YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS 324
+AH D +W + + + K + + S D +W+ + D ++ L+ L GH+ V +V
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR-DERLDLQWSLEGHQLGVVSVD 87
Query: 325 WSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSIC 384
S + + IR WD+ +G+ + I AG D
Sbjct: 88 ISHTLPIAASSSLDAHIRLWDLENGKQIK-------------------SIDAGPVDAWTL 128
Query: 385 LWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVI 444
+ D + L + G +++ + + GK+ S LD F I
Sbjct: 129 AFSPDSQYLAT--GTHVGKVNIFGV-ESGKKEYS---------LDTRGKF---------I 167
Query: 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504
S + S D KYL I+ I+++ I + KL+ +GH IRS + + +
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMP---IRSLTFSPDSQLLVT 223
Query: 505 GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD---- 560
S+D + I+ L L+GH+ V V++ P + H ++S+S D+++++W +
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS-DKSVKVWDVGTRTC 282
Query: 561 -QINMKHRDQSNGIVHHCNG 579
H+DQ G+ ++ NG
Sbjct: 283 VHTFFDHQDQVWGVKYNGNG 302
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 6/169 (3%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
LE H V + SH ASSS D +W+++ Q+ + +T+++SP
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSP 132
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387
+ L T + + V SG+ + + G ++S + DG + +G D I ++D
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 388 L-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD-REANF 434
+ G+ L + +G + I + + D + +++ + I + D + AN
Sbjct: 193 IATGKLLHTLEGH-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ ++ ++A + W L FS D +YLA+ + I+ V+ + ++ L K + +
Sbjct: 113 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK---EYSLDTRGKFILS 169
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382
+++SP+ L + + I +D+ +G+ LH E + + S + D + D
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229
Query: 383 ICLWDL 388
I ++D+
Sbjct: 230 IKIYDV 235
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 268 LEAHSDEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW 325
L H VW + ++H G LAS S D+ IIW +E+G H +GH V +V W
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR-EENGTWEKSHEHAGHDSSVNSVCW 111
Query: 326 SPNDHQL-LTCGQEEA 340
+P+D+ L L CG +
Sbjct: 112 APHDYGLILACGSSDG 127
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS-PN 328
+H D + Q + G LA+ S D+S I++V+ GQ+ L L GH PV+ V+W+ P
Sbjct: 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPM 69
Query: 329 DHQLL-TCGQEEAIRRWDVNSGECLHVYEKTG 359
+L +C + + W +G +E G
Sbjct: 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAG 101
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG--ELVLALAGHSGSVN 533
L++ +GH+ + + + +AS S D +V IW G E AGH SVN
Sbjct: 49 LIADLRGHEGPVWQVAWAHPMYGN-ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN 107
Query: 534 CVSWNPANLHM-LASASDDRTIRI--------WGLDQINMKHRDQSNGI 573
V W P + + LA S D I + W + +IN H N +
Sbjct: 108 SVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAV 156
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 502 IASGSEDSQVYIWH-RYTGELVLA-LAGHSGSVNCVSW-NPANLHMLASASDDRTIRIW 557
+A+ S D V I+ R G++++A L GH G V V+W +P ++LAS S DR + IW
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN----DHQLLTCGQEEA 340
K AS D +W+ +EDGQ + +L H V V+W+P+ + +C Q+
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 341 IRRW 344
+ W
Sbjct: 240 VFIW 243
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 263 QTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR-----LSGH 316
+ + ++ H+ V + + H+ +AS S+D + ++WE+ DG + L R L GH
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIP-DGGLVLPLREPVITLEGH 130
Query: 317 RKPVFTVSWSPNDHQ-LLTCGQEEAIRRWDVNSGECL-----HVYEKTGVGLISCGWFLD 370
K V V+W P LL+ G + I WDV +G + V+ T + S W D
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDT---IYSVDWSRD 187
Query: 371 GGGIFAGMTDKSI 383
G I DK +
Sbjct: 188 GALICTSCRDKRV 200
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 502 IASGSEDSQVYIWHRYTGELVLAL-------AGHSGSVNCVSWNPANLHMLASASDDRTI 554
IASGSED V +W G LVL L GH+ V V+W+P ++L SA D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 555 RIW 557
+W
Sbjct: 157 LVW 159
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 522 VLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
V + GH+ V ++W P N +++AS S+D T+ +W
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVW 109
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN 328
+ H D ++ + +S DG + +S +D+ + E ++ V+ K R +PV V S
Sbjct: 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-- 230
Query: 329 DHQLLTCG----QEEAIRRWDVN 347
+ ++LT G E + WD
Sbjct: 231 EGKILTTGFSRMSERQVALWDTK 253
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW 325
+I +AH E+ L+F G+ L SSS+D IW VK DG S L GHR V ++
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DG--SNPRTLIGHRATVTDIAI 186
Query: 326 SPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357
+L+ + IR W+ +G +H + +
Sbjct: 187 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 218
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 499 QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+A I+S S+D Q+ IW G L GH +V ++ ++L SAS D TIR+W
Sbjct: 149 EALISS-SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW 325
+I +AH E+ L+F G+ L SSS+D IW VK DG S L GHR V ++
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DG--SNPRTLIGHRATVTDIAI 189
Query: 326 SPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357
+L+ + IR W+ +G +H + +
Sbjct: 190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 499 QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+A I+S S+D Q+ IW G L GH +V ++ ++L SAS D TIR+W
Sbjct: 152 EALISS-SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLW 208
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 85/222 (38%), Gaps = 42/222 (18%)
Query: 348 SGEC-----LHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKT 401
SGEC L ++K G GL W + G + + D ++CLWD++ G K
Sbjct: 166 SGECNPDLRLRGHQKEGYGL---SWNSNLSGHLLSASDDHTVCLWDINA-------GPKE 215
Query: 402 LRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI 461
+I D G ++ + A LL + F D++ L++
Sbjct: 216 GKIVDAKAIFTGHS--AVVEDVAWHLLHE--------------SLFGSVADDQKLMI--- 256
Query: 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL 521
W S+ + V F + + +A+GS D V +W +L
Sbjct: 257 ------WDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 522 VL-ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562
L H + V W+P N +LAS+ DR + +W L +I
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 455 YLLVNLINQEIHLWSIESDPK------LVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508
+LL + + LW I + PK + + GH + V + ++ S ++D
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGH--SAVVEDVAWHLLHESLFGSVADD 251
Query: 509 SQVYIWH---RYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565
++ IW T + + H+ VNC+S+NP + +LA+ S D+T+ +W L + +K
Sbjct: 252 QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 106/276 (38%), Gaps = 57/276 (20%)
Query: 305 GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363
G+ + RL GH+K + +SW+ N LL+ + + WD+N+G
Sbjct: 167 GECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP------------- 213
Query: 364 SCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQKTLRISDMAITDDGKRIISICRE 422
G +D IF G S + D+ L ES G ++ DD K +I R
Sbjct: 214 KEGKIVDAKAIFTG---HSAVVEDVAWHLLHESLFG---------SVADDQKLMIWDTRS 261
Query: 423 AAI----LLLDREANFERWIEEEEVITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKLV 477
L+D + S + ++++L ++ + LW + + +
Sbjct: 262 NTTSKPSHLVDAHT---------AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 478 SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW--------------HRYTGELVL 523
++ HK F + + + +AS D ++ +W EL+
Sbjct: 313 HTFESHKDEIFQVH--WSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLF 370
Query: 524 ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
GH+ ++ SWNP ++ S S+D ++IW +
Sbjct: 371 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345
S + DQ +IW+ + + H + H V +S++P +L G ++ + WD
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDL-------------DG 390
+ + + LH +E + W I A TD+ + +WDL DG
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
EL G T +ISD + + +I E I+
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 401
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 265 LQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVK-----------EDGQVSLKHR 312
L E+H DE++ + +S H+ LASS D+ +W++ EDG L
Sbjct: 312 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI 371
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
GH + SW+PN+ ++ E+ I +
Sbjct: 372 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 402
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR-----LSGHRKPVFTVSWSPNDHQ-LLT 334
H+ +AS S+D + ++WE+ DG + L R L GH K V V+W P LL+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIP-DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLS 149
Query: 335 CGQEEAIRRWDVNSGECL-----HVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383
G + I WDV +G + V+ T + S W DG I DK +
Sbjct: 150 AGCDNVILVWDVGTGAAVLTLGPDVHPDT---IYSVDWSRDGALICTSCRDKRV 200
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 502 IASGSEDSQVYIWHRYTGELVLAL-------AGHSGSVNCVSWNPANLHMLASASDDRTI 554
IASGSED V +W G LVL L GH+ V V+W+P ++L SA D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 555 RIW 557
+W
Sbjct: 157 LVW 159
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 522 VLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
V + GH+ V ++W P N +++AS S+D T+ +W
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN 328
+ H D ++ + +S DG + +S +D+ + E ++ V+ K R +PV V S
Sbjct: 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-- 230
Query: 329 DHQLLTCG----QEEAIRRWDVN 347
+ ++LT G E + WD
Sbjct: 231 EGKILTTGFSRMSERQVALWDTK 253
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEE-AIRRWDVNSG 349
+ GH PV ++W P++ ++ G E+ + W++ G
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 42/222 (18%)
Query: 348 SGEC-----LHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKT 401
SGEC L ++K G GL W + G + + D ++CLWD++ G K
Sbjct: 166 SGECNPDLRLRGHQKEGYGL---SWNSNLSGHLLSASDDHTVCLWDINA-------GPKE 215
Query: 402 LRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI 461
+I D G ++ + A LL E+ F S++ D
Sbjct: 216 GKIVDAKAIFTGHS--AVVEDVAWHLL-HESLFG------------SVADD--------- 251
Query: 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL 521
Q++ +W S+ + V F + + +A+GS D V +W +L
Sbjct: 252 -QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 522 VL-ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562
L H + V W+P N +LAS+ DR + +W L +I
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 455 YLLVNLINQEIHLWSIESDPK------LVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508
+LL + + LW I + PK + + GH + V + ++ S ++D
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGH--SAVVEDVAWHLLHESLFGSVADD 251
Query: 509 SQVYIWH---RYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565
++ IW T + + H+ VNC+S+NP + +LA+ S D+T+ +W L + +K
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/276 (17%), Positives = 99/276 (35%), Gaps = 61/276 (22%)
Query: 305 GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSG-------ECLHVYE 356
G+ + RL GH+K + +SW+ N LL+ + + WD+N+G + ++
Sbjct: 167 GECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFT 226
Query: 357 KTGVGLISCGWFLDGGGIFAGMTD-KSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415
+ W L +F + D + + +WD + T + S +
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT--------RSNTTSKPSHL-------- 270
Query: 416 IISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475
+ + E L + + F L ++ + LW + +
Sbjct: 271 VDAHTAEVNCLSFNPYSEF--------------------ILATGSADKTVALWDLRNLKL 310
Query: 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW--------------HRYTGEL 521
+ ++ HK F + + + +AS D ++ +W EL
Sbjct: 311 KLHTFESHKDEIFQVH--WSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 522 VLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+ GH+ ++ SWNP ++ S S+D +IW
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 265 LQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVK-----------EDGQVSLKHR 312
L E+H DE++ + +S H+ LASS D+ +W++ EDG L
Sbjct: 312 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI 371
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
GH + SW+PN+ ++ E+ I +
Sbjct: 372 HGGHTAKISDFSWNPNEPWVICSVSEDNIXQ 402
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 17/156 (10%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345
S + DQ IW+ + + H + H V +S++P +L G ++ + WD
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDL-------------DG 390
+ + + LH +E + W I A TD+ + +WDL DG
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAI 425
EL G T +ISD + + +I E I
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 400
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 17/122 (13%)
Query: 286 YLASSSKDQSAIIWEV----KEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQEEA 340
+L S+S D + +W++ KE V K +GH V V+W L + ++
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 341 IRRWDVNSGEC--------LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392
+ WD S H E + F+ + G DK++ LWDL +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI----LATGSADKTVALWDLRNLK 309
Query: 393 LE 394
L+
Sbjct: 310 LK 311
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 105/294 (35%), Gaps = 56/294 (19%)
Query: 280 FSHDGKYLASSSKDQSAIIWEVKEDGQVSL----KHRLSGHRKPVFTVSWSPNDHQLLTC 335
+ HD SSS D++ +W+ + + S H PV T H L+
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVST------KHCLVAV 161
Query: 336 GQE-EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGRE- 392
G ++ D+ SG C H+ + +++ W I A + D + LWD+
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Query: 393 ----LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFS 448
L+ G+K+ + +GK +
Sbjct: 222 CLITLDQHNGKKSQAVESANTAHNGK-----------------------------VNGLC 252
Query: 449 LSKDNKYLLVNLINQEIHLWSIESDPKLVSRY-----KGHKRARFVIRSCFGGFEQAFIA 503
+ D +LL + + LW+ + + Y K +F + SC E F+
Sbjct: 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV-SCGCSSEFVFVP 311
Query: 504 SGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
GS + ++ Y+GE + L GH +V+C + +N L S S D I W
Sbjct: 312 YGS---TIAVYTVYSGEQITMLKGHYKTVDCCVFQ-SNFQELYSGSRDCNILAW 361
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 498 EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+ +A G+ +V + +G L GH + VSW+P ++LA+AS D +++W
Sbjct: 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW 214
Query: 558 GLDQIN--MKHRDQSNG 572
+ + + + DQ NG
Sbjct: 215 DVRRASGCLITLDQHNG 231
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 528 HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562
H SV V W P + M S+S D+T+++W + +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL 132
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316
N I Q ++ H + + L+F D L S SKD + +W ++ D V++ + GH
Sbjct: 96 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 155
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT 358
R V + + ++++CG + +++ W +NS ++ +++
Sbjct: 156 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 197
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 518 TGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
T + + GH ++N + ++P + ++L S S D +R+W +
Sbjct: 99 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 140
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316
N I Q ++ H + + L+F D L S SKD + +W ++ D V++ + GH
Sbjct: 101 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 160
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT 358
R V + + ++++CG + +++ W +NS ++ +++
Sbjct: 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 202
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 518 TGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
T + + GH ++N + ++P + ++L S S D +R+W +
Sbjct: 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316
N I Q ++ H + + L+F D L S SKD + +W ++ D V++ + GH
Sbjct: 100 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 159
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT 358
R V + + ++++CG + +++ W +NS ++ +++
Sbjct: 160 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 201
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 518 TGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
T + + GH ++N + ++P + ++L S S D +R+W +
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316
N I Q ++ H + + L+F D L S SKD + +W ++ D V++ + GH
Sbjct: 100 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 159
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT 358
R V + + ++++CG + +++ W +NS ++ +++
Sbjct: 160 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 201
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 518 TGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
T + + GH ++N + ++P + ++L S S D +R+W +
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316
N I Q ++ H + + L+F D L S SKD + +W ++ D V++ + GH
Sbjct: 137 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 196
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT 358
R V + + ++++CG + +++ W +NS ++ +++
Sbjct: 197 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 238
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 518 TGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
T + + GH ++N + ++P + ++L S S D +R+W +
Sbjct: 140 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 181
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/250 (20%), Positives = 106/250 (42%), Gaps = 47/250 (18%)
Query: 348 SGEC-----LHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDL-----DGRELESW 396
SGEC L ++K G GL W + G + + D +ICLWD+ +G+ +++
Sbjct: 164 SGECNPDLRLRGHQKEGYGL---SWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDA- 219
Query: 397 KGQKTLRISDMAITDDGKRII-------SICREAAILLLD-REANFERWIEEEEVITS-- 446
KT+ A+ +D + S+ + +++ D R N + + T+
Sbjct: 220 ---KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEV 276
Query: 447 --FSLSKDNKYLLVN-LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503
S + ++++L ++ + LW + + + ++ HK F ++ + + +A
Sbjct: 277 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ--WSPHNETILA 334
Query: 504 SGSEDSQVYIW--------------HRYTGELVLALAGHSGSVNCVSWNPANLHMLASAS 549
S D ++ +W EL+ GH+ ++ SWNP ++ S S
Sbjct: 335 SSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 394
Query: 550 DDRTIRIWGL 559
+D +++W +
Sbjct: 395 EDNIMQVWQM 404
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 455 YLLVNLINQEIHLWSIESDPK------LVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508
+LL + I LW I + PK + + GH V + ++ S ++D
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGH--TAVVEDVSWHLLHESLFGSVADD 249
Query: 509 SQVYIWH---RYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565
++ IW T + ++ H+ VNC+S+NP + +LA+ S D+T+ +W L + +K
Sbjct: 250 QKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 309
Query: 566 ------HRDQ 569
H+D+
Sbjct: 310 LHSFESHKDE 319
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345
S + DQ +IW+ + + H + H V +S++P +L G ++ + WD
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDL-------------DG 390
+ + + LH +E + W I A TD+ + +WDL DG
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDG 362
Query: 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
EL G T +ISD + + +I E I+
Sbjct: 363 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 399
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 265 LQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVK-----------EDGQVSLKHR 312
L E+H DE++ +Q+S H+ LASS D+ +W++ EDG L
Sbjct: 310 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFI 369
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
GH + SW+PN+ ++ E+ I +
Sbjct: 370 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 523 LALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562
L L GH +SWNP L SASDD TI +W + +
Sbjct: 171 LRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAV 210
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 112/260 (43%), Gaps = 34/260 (13%)
Query: 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD-VNSGECLHVYEKTGVGLISC 365
V + L GH V T D+ ++T ++ IR +D +N L + G G+ +
Sbjct: 111 VPQRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWAL 168
Query: 366 GWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQK-TLRISDMAITDDGKRIISICREA 423
+ GG + +G TD+++ +WD+ G ++G T+R D+ + K I++ R+
Sbjct: 169 K-YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 424 AILL--LDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481
+ + L +E++ EE + F ++N P V +
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN--------------------PYFVGVLR 267
Query: 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPAN 541
GH + +R+ G + SGS D+ + +W + + L+GH+ + ++
Sbjct: 268 GHMAS---VRTVSG--HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322
Query: 542 LHMLASASDDRTIRIWGLDQ 561
+ SAS D TIRIW L+
Sbjct: 323 KRCI-SASMDTTIRIWDLEN 341
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 473 DPKLV---SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS 529
+PK V + +GH + + +C FE ++ +G++D + ++ + +L L+GH
Sbjct: 107 NPKFVPQRTTLRGHMTS---VITCLQ-FEDNYVITGADDKMIRVYDSINKKFLLQLSGHD 162
Query: 530 GSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561
G V + + A+ +L S S DRT+R+W + +
Sbjct: 163 GGVWALKY--AHGGILVSGSTDRTVRVWDIKK 192
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L IL H+D ++ + H+ K S+S D + IW++ E+G+ L + L GH V
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL-ENGE--LMYTLQGHTALVGL 357
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370
+ S D L++ + +IR WD N Y T + I+ + D
Sbjct: 358 LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
G + S S D + I+W+V Q+ + LSGH +++ + + ++ + IR
Sbjct: 280 GNIVVSGSYDNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 344 WDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387
WD+ +GE ++ + VGL+ L + + D SI WD
Sbjct: 337 WDLENGELMYTLQGHTALVGLLR----LSDKFLVSAAADGSIRGWD 378
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 110/288 (38%), Gaps = 33/288 (11%)
Query: 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
I + L L H VW L+++H G L S S D++ +W++K+ H GH
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG---CCTHVFEGHNST 205
Query: 320 V--FTVSWSPNDHQLLTCGQEEAIRRWDV-------NSGE------CLHVYEK----TGV 360
V + N ++T ++ + W + + GE H E+ GV
Sbjct: 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265
Query: 361 --GLISCGWFLDGGG--IFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416
G ++ + G G + +G D ++ +WD+ + T RI + KR
Sbjct: 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 417 ISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL 476
IS + I + D E + + L +K+L+ + I W D
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW----DAND 381
Query: 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLA 524
SR + + F + SGSE+ Q I++ +G+LV A
Sbjct: 382 YSRKFSYHHTNLSAITTF-YVSDNILVSGSEN-QFNIYNLRSGKLVHA 427
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 490 IRSCFGGFEQAFIASGSEDSQVYIWH-RYTGELVLALAGHSGSVNCVSWNPANLHMLASA 548
IRS + ++ SGS+D V +W+ L GH V CV++NP + AS
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 549 SDDRTIRIWGLDQ 561
DRT+++W L Q
Sbjct: 160 CLDRTVKVWSLGQ 172
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501
+ I S ++ Y+L + + LW+ E++ L ++GH+ FV+ F + +
Sbjct: 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPST 155
Query: 502 IASGSEDSQVYIWH--RYTGELVLALAGHSGSVNCVSWNP-ANLHMLASASDDRTIRIW 557
ASG D V +W + T L G VN V + P + + +ASDD TI+IW
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 455 YLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR---FVIRSCFGGFEQAFIASGSEDSQV 511
++L L + + LW+ E+ ++ S R F+ R + +I GS+D ++
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR-------KNWIIVGSDDFRI 79
Query: 512 YIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561
+++ TGE V+ H + ++ +P ++L S SDD T+++W +
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWEN 128
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 451 KDNKYLLVNLINQEIHLWSI-ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509
KD +++ + +WS+ +S P + +V + ++ ++ + S+D
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV--DYYPLPDKPYMITASDDL 208
Query: 510 QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+ IW T V L GH +V+ ++P L ++ S S+D T++IW
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 490 IRSCFGGFEQAFIASGSEDSQVYIWH-RYTGELVLALAGHSGSVNCVSWNPANLHMLASA 548
IRS + ++ SGS+D V +W+ L GH V CV++NP + AS
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 549 SDDRTIRIWGLDQ 561
DRT+++W L Q
Sbjct: 160 CLDRTVKVWSLGQ 172
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501
+ I S ++ Y+L + + LW+ E++ L ++GH+ FV+ F + +
Sbjct: 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPST 155
Query: 502 IASGSEDSQVYIWH--RYTGELVLALAGHSGSVNCVSWNP-ANLHMLASASDDRTIRIW 557
ASG D V +W + T L G VN V + P + + +ASDD TI+IW
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 455 YLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR---FVIRSCFGGFEQAFIASGSEDSQV 511
++L L + + LW+ E+ ++ S R F+ R + +I GS+D ++
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR-------KNWIIVGSDDFRI 79
Query: 512 YIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561
+++ TGE V+ H + ++ +P ++L S SDD T+++W +
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWEN 128
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 451 KDNKYLLVNLINQEIHLWSI-ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509
KD +++ + +WS+ +S P + +V + ++ ++ + S+D
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV--DYYPLPDKPYMITASDDL 208
Query: 510 QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+ IW T V L GH +V+ ++P L ++ S S+D T++IW
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIW 255
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQFSHD---GKYLASSSKDQSAIIWEVKEDGQVSLKHRLS 314
N P + +++ + D + L FS G +L + S WEV++ GQ K +
Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-Q 83
Query: 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWF--LDGG 372
H PV V WS + ++ T ++ + WD++S + + + + + + W +
Sbjct: 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAP-VKTIHWIKAPNYS 142
Query: 373 GIFAGMTDKSICLWD 387
+ G DK++ WD
Sbjct: 143 CVMTGSWDKTLKFWD 157
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 341 IRRWDV-NSGECLHVYEKTGVG-LISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392
+R W+V +SG+ + ++ G ++ W DG +F DK+ +WDL +
Sbjct: 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ 119
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 473 DPKLV---SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS 529
+PK V + +GH + + +C FE ++ +G++D + ++ + +L L+GH
Sbjct: 107 NPKFVPQRTTLRGHXTS---VITCLQ-FEDNYVITGADDKXIRVYDSINKKFLLQLSGHD 162
Query: 530 GSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561
G V + + A+ +L S S DRT+R+W + +
Sbjct: 163 GGVWALKY--AHGGILVSGSTDRTVRVWDIKK 192
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L IL H+D ++ + H+ K S+S D + IW++ E+G+ L + L GH V
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL-ENGE--LXYTLQGHTALVGL 357
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370
+ S D L++ + +IR WD N Y T + I+ + D
Sbjct: 358 LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 119/294 (40%), Gaps = 34/294 (11%)
Query: 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD-VNSGECLHVYEKTGVGLISC 365
V + L GH V T D+ ++T ++ IR +D +N L + G G+ +
Sbjct: 111 VPQRTTLRGHXTSVITC-LQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDG-GVWAL 168
Query: 366 GWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQK-TLRISDMAITDDGKRIISICREA 423
+ GG + +G TD+++ +WD+ G ++G T+R D+ + K I++ R+
Sbjct: 169 K-YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 424 AILL--LDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES--------- 472
+ + L +E++ EE + F ++N Y + L + ++
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGS 287
Query: 473 -DPKLVSRYKGHKRARFV-------IRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLA 524
D L+ + ++ I S E+ S S D+ + IW GEL
Sbjct: 288 YDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYT 347
Query: 525 LAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQSNGIVHHCN 578
L GH+ V + + L SA+ D +IR W + + K HH N
Sbjct: 348 LQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDYSRKFS------YHHTN 392
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 109/288 (37%), Gaps = 33/288 (11%)
Query: 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
I + L L H VW L+++H G L S S D++ +W++K+ H GH
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG---CCTHVFEGHNST 205
Query: 320 V--FTVSWSPNDHQLLTCGQEEAIRRWDV-------NSGE------CLHVYEK----TGV 360
V + N ++T ++ + W + + GE H E+ GV
Sbjct: 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265
Query: 361 --GLISCGWFLDGGG--IFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416
G + + G G + +G D ++ +WD+ + T RI + KR
Sbjct: 266 LRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 417 ISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL 476
IS + I + D E + + L +K+L+ + I W D
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW----DAND 381
Query: 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLA 524
SR + + F + SGSE+ Q I++ +G+LV A
Sbjct: 382 YSRKFSYHHTNLSAITTF-YVSDNILVSGSEN-QFNIYNLRSGKLVHA 427
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 490 IRSCFGGFEQAFIASGSEDSQVYIWH-RYTGELVLALAGHSGSVNCVSWNPANLHMLASA 548
IRS + ++ SGS+D V +W+ L GH V CV++NP + AS
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 549 SDDRTIRIWGLDQ 561
DRT+++W L Q
Sbjct: 160 CLDRTVKVWSLGQ 172
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501
+ I S ++ Y+L + + LW+ E++ L ++GH+ FV+ F + +
Sbjct: 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPST 155
Query: 502 IASGSEDSQVYIWH--RYTGELVLALAGHSGSVNCVSWNP-ANLHMLASASDDRTIRIW 557
ASG D V +W + T L G VN V + P + + +ASDD TI+IW
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 455 YLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR---FVIRSCFGGFEQAFIASGSEDSQV 511
++L L + + +W+ E+ ++ S R F+ R + +I GS+D ++
Sbjct: 27 WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR-------KNWIIVGSDDFRI 79
Query: 512 YIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+++ TGE V+ H + ++ +P ++L S SDD T+++W
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLW 124
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 451 KDNKYLLVNLINQEIHLWSI-ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509
KD +++ + +WS+ +S P + +V + ++ ++ + S+D
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV--DYYPLPDKPYMITASDDL 208
Query: 510 QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+ IW T V L GH +V+ ++P L ++ S S+D T++IW
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIW 255
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 490 IRSCFGGFEQAFIASGSEDSQVYIWH-RYTGELVLALAGHSGSVNCVSWNPANLHMLASA 548
IRS + ++ SGS+D V +W+ L GH V CV++NP + AS
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 549 SDDRTIRIWGLDQ 561
DRT+++W L Q
Sbjct: 160 CLDRTVKVWSLGQ 172
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501
+ I S ++ Y+L + + LW+ E++ L ++GH+ FV+ F + +
Sbjct: 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPST 155
Query: 502 IASGSEDSQVYIWH--RYTGELVLALAGHSGSVNCVSWNP-ANLHMLASASDDRTIRIW 557
ASG D V +W + T L G VN V + P + + +ASDD TI+IW
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 455 YLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR---FVIRSCFGGFEQAFIASGSEDSQV 511
++L L + + LW+ E+ ++ S R F+ R + +I GS+D ++
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR-------KNWIIVGSDDFRI 79
Query: 512 YIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+++ TGE V+ H + ++ +P ++L S SDD T+++W
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLW 124
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 451 KDNKYLLVNLINQEIHLWSI-ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509
KD +++ + +WS+ +S P + +V + ++ ++ + S+D
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV--DYYPLPDKPYMITASDDL 208
Query: 510 QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+ IW T V L GH +V+ ++P L ++ S S+D T++IW
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIW 255
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 286 YLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344
+LA++S DQ+ IW++++ G+ S + L HR PV +SP+ +LLT Q+ IR +
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 324
Query: 345 DVNSGEC 351
+ +C
Sbjct: 325 SASQWDC 331
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 519 GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565
G+ + L H V V+ NP LA+AS D+T++IW L Q+ K
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK 287
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 286 YLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344
+LA++S DQ+ IW++++ G+ S + L HR PV +SP+ +LLT Q+ IR +
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Query: 345 DVNSGEC 351
+ +C
Sbjct: 324 SASQWDC 330
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 519 GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565
G+ + L H V V+ NP LA+AS D+T++IW L Q+ K
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK 286
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 286 YLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344
+LA++S DQ+ IW++++ G+ S + L HR PV +SP+ +LLT Q+ IR +
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Query: 345 DVNSGEC 351
+ +C
Sbjct: 324 SASQWDC 330
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 519 GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565
G+ + L H V V+ NP LA+AS D+T++IW L Q+ K
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK 286
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318
RI + + L+ HS EV L + DG LAS D IW+ + K + H
Sbjct: 204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP---KFTKTNHNA 260
Query: 319 PVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIF 375
V V+W P LL G ++ I W+ +G ++ + G + S W I
Sbjct: 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIM 319
Query: 376 A--GMTDKSICLW 386
+ G D ++ +W
Sbjct: 320 STHGFPDNNLSIW 332
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 439 EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498
+E + S S D +L V L N + ++ +ES KL R +AR C +
Sbjct: 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL--RTMAGHQARV---GCLS-WN 185
Query: 499 QAFIASGSEDSQVYIWH---RYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIR 555
+ ++SGS ++ H R + L GHS V ++W L LAS +D ++
Sbjct: 186 RHVLSSGSRSGAIH--HHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ-LASGGNDNVVQ 242
Query: 556 IW 557
IW
Sbjct: 243 IW 244
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 502 IASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD--DRTIRIW 557
+ASG D+ V IW + H+ +V V+W P ++LA+ D+ I W
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/295 (18%), Positives = 111/295 (37%), Gaps = 73/295 (24%)
Query: 244 DSDFSLYSDHQCGRNRI---PSQTL--QILEAHSDEVWFLQFSHDGKYLASSSKDQSAII 298
D+D YS Q GR + P+ + + L+ HS +V+ L ++ + ++ S+S+D I+
Sbjct: 34 DTDVEKYSKAQ-GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIV 92
Query: 299 W----------------------------------------------EVKEDGQVSLKHR 312
W + DG + +
Sbjct: 93 WNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRV 152
Query: 313 LSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLHVY-------EKTGVGLIS 364
L+GH+ + + P+ + +L+T ++ WDV +G+ + ++ V +S
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 365 CGWFLDGGGIFAGMTDKSICLWDL--DGRELESWKGQKTLRISDMAITDDGKRIISICRE 422
L+ +G D ++ LWDL R + ++ G + I+ + DG+R + +
Sbjct: 213 IN-SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDD 270
Query: 423 AAILLLDREANFERWIEEEE---------VITSFSLSKDNKYLLVNLINQEIHLW 468
L D + + E ++TS + S + L N + ++W
Sbjct: 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 54/313 (17%), Positives = 110/313 (35%), Gaps = 67/313 (21%)
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG 372
L GH V+++ W+P + +++ Q+ + W+ + + H + ++ C + +G
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 373 GIFAGMTDKSICLWDL------DGRELES--WKGQKTLRISDMAITDDGKRIISICREAA 424
+ G D + +++L DG S G K S + D R+I+ +
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 425 ILLLDREANFERWIEEEEV-------ITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKL 476
+L D I E + S S++ N + ++ + + LW + +
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241
Query: 477 VSRYKGHK-----------RARF-----------------------------------VI 490
V Y GH+ RF ++
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301
Query: 491 RSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA----GHSGSVNCVSWNPANLHMLA 546
S + +G + Y+W E+VL L H G ++C+ + ++ L
Sbjct: 302 TSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS-SDGSALC 360
Query: 547 SASDDRTIRIWGL 559
+ S D+ ++IW
Sbjct: 361 TGSWDKNLKIWAF 373
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 18/230 (7%)
Query: 266 QILEAHSDEVWFLQFSHDGKY-LASSSKDQSAIIWEVKEDGQVSL--KHRLSGHRKPVFT 322
++L H Q+ D + L + S DQ+ ++W+V ++S+ SGH V +
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 323 VSW-SPNDHQLLTCGQEEAIRRWDVN-SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD 380
+S S N + ++ + +R WD+ + + Y + S +F DG G D
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270
Query: 381 KSICLWDL-DGRELESWKGQKTLR------ISDMAITDDGKRIIS-----ICREAAILLL 428
+ L+D+ G +L+ + + ++ +A + G+ + + C LL
Sbjct: 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330
Query: 429 DREANFERWIEEEE-VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477
+ N E I+ LS D L ++ + +W+ K+V
Sbjct: 331 EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKIV 380
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 110/279 (39%), Gaps = 46/279 (16%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
+ HS V + DG Y S+S D++ +W+V G+ R GH+ V +V
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GET--YQRFVGHKSDVMSVDIDK 117
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVY------------------EKTGVGLISCGWFL 369
+++ +++ I+ W + G+CL + V +IS G
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--- 173
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DK + W+L+ ++E+ I+ + + DG I S ++ I+L +
Sbjct: 174 ---------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 430 REANFERW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-----LVSRYKGH 483
A + + ++ + S + S N+Y L I ++S+ DP+ L + G+
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATATGIKVFSL--DPQYLVDDLRPEFAGY 281
Query: 484 KRAR--FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520
+A + + Q A G D+ + +W T
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFA-GYTDNVIRVWQVMTAN 319
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 380 DKSICLWDLDGRE------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA- 432
DK++ W L G + + S+KG + + D +T DG +S + + L D
Sbjct: 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDCTLTADGAYALSASWDKTLRLWDVATG 97
Query: 433 -NFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK----RAR 487
++R++ + + S + K ++ ++ I +W+I+ + ++ GH + R
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVR 155
Query: 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547
V+ + + I S D V W+ ++ GH+ ++N ++ +P + ++AS
Sbjct: 156 -VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIAS 213
Query: 548 ASDDRTIRIWGL 559
A D I +W L
Sbjct: 214 AGKDGEIMLWNL 225
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 19/206 (9%)
Query: 287 LASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
L S+S+D++ I W++ D Q V ++ GH V + + + L+ ++ +R
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES------WK 397
WDV +GE + ++S I +G DK+I +W + G+ L + W
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLDR-----EANFERWIEEEEVITSFSLSKD 452
Q + ++ A DD IIS + + + EA+F I I + + S D
Sbjct: 152 SQVRVVPNEKA-DDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPD 207
Query: 453 NKYLLVNLINQEIHLWSIESDPKLVS 478
+ + EI LW++ + + +
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYT 233
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 444 ITSFSLSKDNKYLLVNLINQEIHL-WSIESDPK----LVSRYKGHKRARFVIRSCFGGFE 498
+TS + S LL++ + + W + D + V +KGH +++ C +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH---IVQDCTLTAD 76
Query: 499 QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558
A+ S S D + +W TGE GH V V + M+ S S D+TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWT 135
Query: 559 L 559
+
Sbjct: 136 I 136
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 36/231 (15%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+T Q H +V + + S S+D++ +W +K GQ L GH V
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQC--LATLLGHNDWVSQ 153
Query: 323 VSWSPNDH------QLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGI 374
V PN+ +++ G ++ ++ W++N E + + + ++ DG I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLI 211
Query: 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISD--------------MAITDDGKRIISIC 420
+ D I LW+L + K TL D A T G ++ S+
Sbjct: 212 ASAGKDGEIMLWNLAAK-----KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD 266
Query: 421 REAAILLLDRE-ANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470
+ + L E A + + E V S + S D + L + I +W +
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAV--SLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 110/279 (39%), Gaps = 46/279 (16%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
+ HS V + DG Y S+S D++ +W+V G+ R GH+ V +V
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GET--YQRFVGHKSDVMSVDIDK 111
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVY------------------EKTGVGLISCGWFL 369
+++ +++ I+ W + G+CL + V +IS G
Sbjct: 112 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--- 167
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DK + W+L+ ++E+ I+ + + DG I S ++ I+L +
Sbjct: 168 ---------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 430 REANFERW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-----LVSRYKGH 483
A + + ++ + S + S N+Y L I ++S+ DP+ L + G+
Sbjct: 219 LAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATATGIKVFSL--DPQYLVDDLRPEFAGY 275
Query: 484 KRAR--FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520
+A + + Q A G D+ + +W T
Sbjct: 276 SKAAEPHAVSLAWSADGQTLFA-GYTDNVIRVWQVMTAN 313
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 380 DKSICLWDLDGRE------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA- 432
DK++ W L G + + S+KG + + D +T DG +S + + L D
Sbjct: 33 DKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDCTLTADGAYALSASWDKTLRLWDVATG 91
Query: 433 -NFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK----RAR 487
++R++ + + S + K ++ ++ I +W+I+ + ++ GH + R
Sbjct: 92 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVR 149
Query: 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547
V+ + + I S D V W+ ++ GH+ ++N ++ +P + ++AS
Sbjct: 150 -VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIAS 207
Query: 548 ASDDRTIRIWGL 559
A D I +W L
Sbjct: 208 AGKDGEIMLWNL 219
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 19/206 (9%)
Query: 287 LASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
L S+S+D++ I W++ D Q V ++ GH V + + + L+ ++ +R
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES------WK 397
WDV +GE + ++S I +G DK+I +W + G+ L + W
Sbjct: 86 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 145
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLDR-----EANFERWIEEEEVITSFSLSKD 452
Q + ++ A DD IIS + + + EA+F I I + + S D
Sbjct: 146 SQVRVVPNEKA-DDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPD 201
Query: 453 NKYLLVNLINQEIHLWSIESDPKLVS 478
+ + EI LW++ + + +
Sbjct: 202 GTLIASAGKDGEIMLWNLAAKKAMYT 227
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 444 ITSFSLSKDNKYLLVNLINQEIHL-WSIESDPK----LVSRYKGHKRARFVIRSCFGGFE 498
+TS + S LL++ + + W + D + V +KGH +++ C +
Sbjct: 14 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH---IVQDCTLTAD 70
Query: 499 QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558
A+ S S D + +W TGE GH V V + M+ S S D+TI++W
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWT 129
Query: 559 L 559
+
Sbjct: 130 I 130
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 36/231 (15%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+T Q H +V + + S S+D++ +W +K GQ L GH V
Sbjct: 92 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQC--LATLLGHNDWVSQ 147
Query: 323 VSWSPNDH------QLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGI 374
V PN+ +++ G ++ ++ W++N E + + + ++ DG I
Sbjct: 148 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLI 205
Query: 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISD--------------MAITDDGKRIISIC 420
+ D I LW+L + K TL D A T G ++ S+
Sbjct: 206 ASAGKDGEIMLWNLAAK-----KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD 260
Query: 421 REAAILLLDRE-ANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470
+ + L E A + + E V S + S D + L + I +W +
Sbjct: 261 PQYLVDDLRPEFAGYSKAAEPHAV--SLAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 110/279 (39%), Gaps = 46/279 (16%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
+ HS V + DG Y S+S D++ +W+V G+ R GH+ V +V
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GET--YQRFVGHKSDVMSVDIDK 117
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVY------------------EKTGVGLISCGWFL 369
+++ +++ I+ W + G+CL + V +IS G
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--- 173
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DK + W+L+ ++E+ I+ + + DG I S ++ I+L +
Sbjct: 174 ---------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 430 REANFERW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-----LVSRYKGH 483
A + + ++ + S + S N+Y L I ++S+ DP+ L + G+
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATATGIKVFSL--DPQYLVDDLRPEFAGY 281
Query: 484 KRAR--FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520
+A + + Q A G D+ + +W T
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFA-GYTDNVIRVWQVMTAN 319
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 380 DKSICLWDLDGRE------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA- 432
DK++ W L G + + S+KG + + D +T DG +S + + L D
Sbjct: 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDCTLTADGAYALSASWDKTLRLWDVATG 97
Query: 433 -NFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK----RAR 487
++R++ + + S + K ++ ++ I +W+I+ + ++ GH + R
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVR 155
Query: 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547
V+ + + I S D V W+ ++ GH+ ++N ++ +P + ++AS
Sbjct: 156 -VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIAS 213
Query: 548 ASDDRTIRIWGL 559
A D I +W L
Sbjct: 214 AGKDGEIMLWNL 225
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 19/206 (9%)
Query: 287 LASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
L S+S+D++ I W++ D Q V ++ GH V + + + L+ ++ +R
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES------WK 397
WDV +GE + ++S I +G DK+I +W + G+ L + W
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLDR-----EANFERWIEEEEVITSFSLSKD 452
Q + ++ A DD IIS + + + EA+F I I + + S D
Sbjct: 152 SQVRVVPNEKA-DDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPD 207
Query: 453 NKYLLVNLINQEIHLWSIESDPKLVS 478
+ + EI LW++ + + +
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYT 233
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 444 ITSFSLSKDNKYLLVNLINQEIHL-WSIESDPK----LVSRYKGHKRARFVIRSCFGGFE 498
+TS + S LL++ + + W + D + V +KGH +++ C +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH---IVQDCTLTAD 76
Query: 499 QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558
A+ S S D + +W TGE GH V V + M+ S S D+TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWT 135
Query: 559 L 559
+
Sbjct: 136 I 136
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 36/231 (15%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+T Q H +V + + S S+D++ +W +K GQ L GH V
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQC--LATLLGHNDWVSQ 153
Query: 323 VSWSPNDH------QLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGI 374
V PN+ +++ G ++ ++ W++N E + + + ++ DG I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLI 211
Query: 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISD--------------MAITDDGKRIISIC 420
+ D I LW+L + K TL D A T G ++ S+
Sbjct: 212 ASAGKDGEIMLWNLAAK-----KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD 266
Query: 421 REAAILLLDRE-ANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470
+ + L E A + + E V S + S D + L + I +W +
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAV--SLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 109/274 (39%), Gaps = 46/274 (16%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
+ HS V + DG Y S+S D++ +W+V G+ R GH+ V +V
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GET--YQRFVGHKSDVMSVDIDK 117
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVY------------------EKTGVGLISCGWFL 369
+++ +++ I+ W + G+CL + V +IS G
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--- 173
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DK + W+L+ ++E+ I+ + + DG I S ++ I+L +
Sbjct: 174 ---------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 430 REANFERW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-----LVSRYKGH 483
A + + ++ + S + S N+Y L I ++S+ DP+ L + G+
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATATGIKVFSL--DPQYLVDDLRPEFAGY 281
Query: 484 KRAR--FVIRSCFGGFEQAFIASGSEDSQVYIWH 515
+A + + Q A G D+ + +W
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFA-GYTDNVIRVWQ 314
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 380 DKSICLWDLDGRE------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA- 432
DK++ W L G + + S+KG + + D +T DG +S + + L D
Sbjct: 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDCTLTADGAYALSASWDKTLRLWDVATG 97
Query: 433 -NFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK----RAR 487
++R++ + + S + K ++ ++ I +W+I+ + ++ GH + R
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVR 155
Query: 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547
V+ + + I S D V W+ ++ GH+ ++N ++ +P + ++AS
Sbjct: 156 -VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIAS 213
Query: 548 ASDDRTIRIWGL 559
A D I +W L
Sbjct: 214 AGKDGEIMLWNL 225
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 19/206 (9%)
Query: 287 LASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
L S+S+D++ I W++ D Q V ++ GH V + + + L+ ++ +R
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES------WK 397
WDV +GE + ++S I +G DK+I +W + G+ L + W
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLDR-----EANFERWIEEEEVITSFSLSKD 452
Q + ++ A DD IIS + + + EA+F I I + + S D
Sbjct: 152 SQVRVVPNEKA-DDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPD 207
Query: 453 NKYLLVNLINQEIHLWSIESDPKLVS 478
+ + EI LW++ + + +
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYT 233
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 444 ITSFSLSKDNKYLLVNLINQEIHL-WSIESDPK----LVSRYKGHKRARFVIRSCFGGFE 498
+TS + S LL++ + + W + D + V +KGH +++ C +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH---IVQDCTLTAD 76
Query: 499 QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558
A+ S S D + +W TGE GH V V + M+ S S D+TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWT 135
Query: 559 L 559
+
Sbjct: 136 I 136
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 36/229 (15%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+T Q H +V + + S S+D++ +W +K GQ L GH V
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQC--LATLLGHNDWVSQ 153
Query: 323 VSWSPNDH------QLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGI 374
V PN+ +++ G ++ ++ W++N E + + + ++ DG I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLI 211
Query: 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISD--------------MAITDDGKRIISIC 420
+ D I LW+L + K TL D A T G ++ S+
Sbjct: 212 ASAGKDGEIMLWNLAAK-----KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD 266
Query: 421 REAAILLLDRE-ANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468
+ + L E A + + E V S + S D + L + I +W
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAV--SLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 109/279 (39%), Gaps = 46/279 (16%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
+ HS V + DG Y S+S D++ +W+V G+ R GH+ V +V
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GET--YQRFVGHKSDVMSVDIDK 117
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVY------------------EKTGVGLISCGWFL 369
+++ +++ I+ W + G+CL + V +IS G
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--- 173
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DK + W+L+ ++E+ I+ + + DG I S ++ I+L +
Sbjct: 174 ---------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 430 REANFERW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-----LVSRYKGH 483
A + + ++ + S + S N+Y L I ++S+ DP+ L + G+
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATATGIKVFSL--DPQYLVDDLRPEFAGY 281
Query: 484 KRAR--FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520
A + + Q A G D+ + +W T
Sbjct: 282 SAAAEPHAVSLAWSADGQTLFA-GYTDNVIRVWQVMTAN 319
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 380 DKSICLWDLDGRE------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA- 432
DK++ W L G + + S+KG + + D +T DG +S + + L D
Sbjct: 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDCTLTADGAYALSASWDKTLRLWDVATG 97
Query: 433 -NFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK----RAR 487
++R++ + + S + K ++ ++ I +W+I+ + ++ GH + R
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVR 155
Query: 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547
V+ + + I S D V W+ ++ GH+ ++N ++ +P + ++AS
Sbjct: 156 -VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIAS 213
Query: 548 ASDDRTIRIWGL 559
A D I +W L
Sbjct: 214 AGKDGEIMLWNL 225
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 19/206 (9%)
Query: 287 LASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
L S+S+D++ I W++ D Q V ++ GH V + + + L+ ++ +R
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES------WK 397
WDV +GE + ++S I +G DK+I +W + G+ L + W
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLDR-----EANFERWIEEEEVITSFSLSKD 452
Q + ++ A DD IIS + + + EA+F I I + + S D
Sbjct: 152 SQVRVVPNEKA-DDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPD 207
Query: 453 NKYLLVNLINQEIHLWSIESDPKLVS 478
+ + EI LW++ + + +
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYT 233
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 444 ITSFSLSKDNKYLLVNLINQEIHL-WSIESDPK----LVSRYKGHKRARFVIRSCFGGFE 498
+TS + S LL++ + + W + D + V +KGH +++ C +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH---IVQDCTLTAD 76
Query: 499 QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558
A+ S S D + +W TGE GH V V + M+ S S D+TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWT 135
Query: 559 L 559
+
Sbjct: 136 I 136
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 36/231 (15%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+T Q H +V + + S S+D++ +W +K GQ L GH V
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQC--LATLLGHNDWVSQ 153
Query: 323 VSWSPNDH------QLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGI 374
V PN+ +++ G ++ ++ W++N E + + + ++ DG I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLI 211
Query: 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISD--------------MAITDDGKRIISIC 420
+ D I LW+L + K TL D A T G ++ S+
Sbjct: 212 ASAGKDGEIMLWNLAAK-----KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL- 265
Query: 421 REAAILLLDREANFERWIEEEEV-ITSFSLSKDNKYLLVNLINQEIHLWSI 470
+ L+ D F + E S + S D + L + I +W +
Sbjct: 266 -DPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 53/259 (20%)
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRR--------------WDVNS-GECLHVYE------KT 358
+ + +W+P D +L G++ ++ R W + E H + KT
Sbjct: 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKT 107
Query: 359 GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS 418
+ W DG I G+ + + LW+ G L + +S + DG IIS
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVS-VKWNKDGTHIIS 166
Query: 419 ICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478
+ E +L + + V+ F L + + IN E H D L
Sbjct: 167 MDVENVTILWN--------VISGTVMQHFELKETGG----SSINAENH----SGDGSLGV 210
Query: 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWN 538
+ +FVI G F+ +E + TG+L+ GH G ++ + +N
Sbjct: 211 DVEWVDDDKFVIPGPKGAI---FVYQITEKTP-------TGKLI----GHHGPISVLEFN 256
Query: 539 PANLHMLASASDDRTIRIW 557
N +L SASDD T+RIW
Sbjct: 257 DTN-KLLLSASDDGTLRIW 274
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L H + L+F+ K L S+S D + IW G + ++ GH + + + SW
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH---GGNGNSQNCFYGHSQSIVSASWVG 299
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387
+D ++++C + ++R W + L + GV + + DG D + ++D
Sbjct: 300 DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Query: 388 L 388
L
Sbjct: 359 L 359
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQ 331
+++V L +SHDG + + ++ +W + +L + L+ HR P+ +V W+ +
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLW----NKTGALLNVLNFHRAPIVSVKWNKDGTH 163
Query: 332 LLTCGQEEAIRRWDVNSGECLHVYE 356
+++ E W+V SG + +E
Sbjct: 164 IISMDVENVTILWNVISGTVMQHFE 188
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371
+L GH P+ + ++ + LL+ + +R W +G + + ++S W D
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301
Query: 372 GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431
I M D S+ LW L L + + I I+ DG++ A+ +D +
Sbjct: 302 KVISCSM-DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKY-------AVAFMDGQ 353
Query: 432 AN 433
N
Sbjct: 354 VN 355
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 502 IASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559
I +G E+ ++ +W++ TG L+ L H + V WN H+++ ++ TI +W +
Sbjct: 123 IVTGVENGELRLWNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTI-LWNV 178
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 380 DKSICLWDLDGRE------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA- 432
DK++ W L G + + S+KG + + D +T DG +S + + L D
Sbjct: 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDCTLTADGAYALSASWDKTLRLWDVATG 97
Query: 433 -NFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK----RAR 487
++R++ + + S + K ++ ++ I +W+I+ + ++ GH + R
Sbjct: 98 ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVR 155
Query: 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547
V+ + + I S D V W+ ++ GH+ ++N ++ +P + ++AS
Sbjct: 156 -VVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIAS 213
Query: 548 ASDDRTIRIWGL 559
A D I +W L
Sbjct: 214 AGKDGEIXLWNL 225
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 110/281 (39%), Gaps = 50/281 (17%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
+ HS V + DG Y S+S D++ +W+V G+ R GH+ V +V
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GET--YQRFVGHKSDVXSVDIDK 117
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVY------------------EKTGVGLISCGWFL 369
+++ +++ I+ W + G+CL + V +IS G
Sbjct: 118 KASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--- 173
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DK + W+L+ ++E+ I+ + + DG I S ++ I L +
Sbjct: 174 ---------NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Query: 430 ---REANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-----LVSRYK 481
++A + ++E +FS N+Y L I ++S+ DP+ L +
Sbjct: 225 LAAKKAXYTLSAQDEVFSLAFS---PNRYWLAAATATGIKVFSL--DPQYLVDDLRPEFA 279
Query: 482 GHKRAR--FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520
G+ +A + + Q A G D+ + +W T
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFA-GYTDNVIRVWQVXTAN 319
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 287 LASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
L S+S+D++ I W++ D Q V ++ GH V + + + L+ ++ +R
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES------WK 397
WDV +GE + + S I +G DK+I +W + G+ L + W
Sbjct: 92 WDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLDR-----EANFERWIEEEEVITSFSLSKD 452
Q + ++ A DD IIS + + + EA+F I I + + S D
Sbjct: 152 SQVRVVPNEKA-DDDSVTIISAGNDKXVKAWNLNQFQIEADF---IGHNSNINTLTASPD 207
Query: 453 NKYLLVNLINQEIHLWSIES 472
+ + EI LW++ +
Sbjct: 208 GTLIASAGKDGEIXLWNLAA 227
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 444 ITSFSLSKDNKYLLVNLINQEIHL-WSIESDPK----LVSRYKGHKRARFVIRSCFGGFE 498
+TS + S LL++ + + W + D + V +KGH +++ C +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH---IVQDCTLTAD 76
Query: 499 QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558
A+ S S D + +W TGE GH V V + + S S D+TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK-KASXIISGSRDKTIKVWT 135
Query: 559 L 559
+
Sbjct: 136 I 136
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 36/233 (15%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+T Q H +V + + S S+D++ +W +K GQ L GH V
Sbjct: 98 ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK--GQC--LATLLGHNDWVSQ 153
Query: 323 VSWSPNDH------QLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGI 374
V PN+ +++ G ++ ++ W++N E + + + ++ DG I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLI 211
Query: 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISD--------------MAITDDGKRIISIC 420
+ D I LW+L + K TL D A T G ++ S+
Sbjct: 212 ASAGKDGEIXLWNLAAK-----KAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD 266
Query: 421 REAAILLLDRE-ANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472
+ + L E A + + E V S + S D + L + I +W + +
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAV--SLAWSADGQTLFAGYTDNVIRVWQVXT 317
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 134/324 (41%), Gaps = 45/324 (13%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L H + ++++ +G L S SKD SA +W ++ L GH ++++
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDC 84
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK------ 381
+T + +I+ WDV++G+C+ + K+ V + F G F + D
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATW-KSPVPVKRVE-FSPCGNYFLAILDNVMKNPG 142
Query: 382 SICLWDLD----GRELESWKGQKTLRIS-----DMAI----TDDGKRIISICREAAILLL 428
SI +++++ EL + +I D A + GK II+ ++ I
Sbjct: 143 SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202
Query: 429 DREANFERWIE----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH- 483
D N+E +++ E+ I+ S D Y + + + L + S +++ +Y+
Sbjct: 203 DVSNNYE-YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV-STLQVLKKYETDC 260
Query: 484 --------KRARFVIRSCFGGFEQAFIASGSEDS---QVYIWHRYTGELVLALAGHSGSV 532
F+I GG E + + S + + +H+ E + + GH G +
Sbjct: 261 PLNTAVITPLKEFIILG--GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL 318
Query: 533 NCVSWNPANLHMLASASDDRTIRI 556
N V+ +P AS +D IR+
Sbjct: 319 NTVAISPQGT-SYASGGEDGFIRL 341
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 27/198 (13%)
Query: 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371
+L+GH +P+ V ++ L +C ++ + W +GE L + G W +D
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD----GHTGTIWSIDV 82
Query: 372 GGI----FAGMTDKSICLWDL-DGRELESWK-------------GQKTLRISDMAITDDG 413
G D SI LWD+ +G+ + +WK G L I D + + G
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG 142
Query: 414 K-RIISICREAAILLLDR--EANFERWIEEE--EVITSFSLSKDNKYLLVNLINQEIHLW 468
I I R++A L + E + I E + T S KY++ + +I +
Sbjct: 143 SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202
Query: 469 SIESDPKLVSRYKGHKRA 486
+ ++ + V H+++
Sbjct: 203 DVSNNYEYVDSIDLHEKS 220
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 68/186 (36%), Gaps = 23/186 (12%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L L+ H+ +W + KY + S D S +W+V +GQ + PV
Sbjct: 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-NGQCVATWK---SPVPVKR 120
Query: 323 VSWSPNDHQLLTC-----GQEEAIRRWDVNSGECLHVYEK----------TGVGLIS--- 364
V +SP + L +I +++ H K T GL +
Sbjct: 121 VEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180
Query: 365 CGWFLDGGGIFAGMTDKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREA 423
GW G I AG D I +D+ + E ISDM + D I+ R+
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT 240
Query: 424 AILLLD 429
L+D
Sbjct: 241 NSFLVD 246
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 459 NLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518
NL Q H+ +I + GH+R ++ E + S S+DS +W+
Sbjct: 15 NLYFQGSHMKAI--------KLTGHERPLTQVKY---NKEGDLLFSCSKDSSASVWYSLN 63
Query: 519 GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
GE + L GH+G++ + + + + + S D +I++W
Sbjct: 64 GERLGTLDGHTGTIWSIDVDCFTKYCV-TGSADYSIKLW 101
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 454 KYLLVNLINQEIHLWSI-ESDPKLVSRYKGHKRARFV-IRSCFGGFEQAFIASGSEDSQV 511
K +LV + + LW I E + LV+++ ++ V S F QA SG +D V
Sbjct: 106 KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQA--VSGGKDFSV 163
Query: 512 YIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
+W ++ + HS VNCV+ P + S +D I +W
Sbjct: 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 264 TLQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ Q HS + L +S H +LAS S+D + + D S R HR V
Sbjct: 261 SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVL----DADFSEVFRDLSHRDFVTG 316
Query: 323 VSWSPNDHQLLT 334
V+WSP DH T
Sbjct: 317 VAWSPLDHSKFT 328
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-D 329
H D V L DG S KD S +W++ Q ++ + H V V+ P D
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS---QKAVLKSYNAHSSEVNCVAACPGKD 194
Query: 330 HQLLTCGQEEAIRRWDV 346
L+CG++ I WD
Sbjct: 195 TIFLSCGEDGRILLWDT 211
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 290 SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNS 348
S D S +IW+++ + L+ GH+K + ++ W D H LL+ G++ + W+ S
Sbjct: 236 SDNDPSILIWDLR-NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294
Query: 349 GECLHVYEKTGVGLISCGWFLDGGGIFA 376
E L + G + + +FA
Sbjct: 295 AEQLSQFPARGNWCFKTKFAPEAPDLFA 322
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 432 ANFERWIEEEEVITSFS---LSKDNKYLLVNLINQEIHLWSIESDPKLV---SRYKGHKR 485
A+ E+ I +V + F+ S +NK + L N + L+S + +R+ H
Sbjct: 55 ADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS 114
Query: 486 ARFVIRSCFGGFEQAFIASGSEDSQVYIWH-----RYTGELVLALAGHSGS----VNCVS 536
+ ++ F + +ASG + +++IW G S S V ++
Sbjct: 115 SVKTVK--FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172
Query: 537 WNPANLHMLASASDDRTIRIWGL----DQINMKHRDQSNGI 573
WN + H+ ASA IW L + I++ + ++GI
Sbjct: 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI 213
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 495 GGFEQAFIASGSEDSQVYIWHRYTGE-----LVLALAGHSGSVNCVSWNPANL--HMLAS 547
G E +G D+ V IW +Y + L L GHS V V+W+P L LAS
Sbjct: 166 GTKESRKFVTGGADNLVKIW-KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 548 ASDDRTIRIWGLDQ 561
S DRT IW D
Sbjct: 225 VSQDRTCIIWTQDN 238
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
I AH++ + + GK LA+ S D++ I+EV+ + L L+GH PV+ V W+
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWA 62
Query: 327 -PNDHQLL-TCGQEEAIRRWDVNSG 349
P +L +C + + W +G
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENG 87
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 462 NQEIHLWSIESDP-KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520
++ I ++ +E + KL+ GH+ + + F +AS S D +V IW G
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF-GTILASCSYDGKVLIWKEENGR 88
Query: 521 L--VLALAGHSGSVNCVSWNPANL-HMLASASDDRTIRI 556
+ A HS SVN V W P +L AS D + +
Sbjct: 89 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 268 LEAHSDEVWFLQFSHD---GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP--VFT 322
LE HSD V + +S YLAS S+D++ IIW + K L + P ++
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVN 347
SWS + + L G + + W N
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 493 CFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDR 552
C F+ + SGS D +W G LV L H+ SV + + +AS D+
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKE--GSLVYNLQAHNASVWDAKVVSFSENKFLTASADK 165
Query: 553 TIRIWGLDQINMKHRDQSNGIVHH 576
TI++W D++ N +V H
Sbjct: 166 TIKLWQNDKVIKTFSGIHNDVVRH 189
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 407 MAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466
+ I+ + + +E +++ + N W + + SFS +NK+L + ++ I
Sbjct: 116 VVISGSWDKTAKVWKEGSLVYNLQAHNASVW---DAKVVSFS---ENKFLTASA-DKTIK 168
Query: 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA 526
LW + K++ + G V+R + S S D + + +TG+++
Sbjct: 169 LWQ---NDKVIKTFSGIHND--VVRH-LAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYE 222
Query: 527 GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH 566
GH V C+ P + S +DRT+RIW + ++K
Sbjct: 223 GHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQ 260
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 14/179 (7%)
Query: 268 LEAHSDEVW---FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS 324
L+AH+ VW + FS + K+L +S+ D++ +W+ + + SG V
Sbjct: 138 LQAHNASVWDAKVVSFSEN-KFLTASA-DKTIKLWQNDK-----VIKTFSGIHNDVVRHL 190
Query: 325 WSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSIC 384
+D ++C + I+ D ++G+ L YE + C L G I + D+++
Sbjct: 191 AVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGH-ESFVYCIKLLPNGDIVSCGEDRTVR 249
Query: 385 LWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEV 443
+W + L+ + I + +G I+ + + + +E + RW E+E+
Sbjct: 250 IWSKENGSLKQVITLPAISIWSVDCXSNGDIIVG-SSDNLVRIFSQEKS--RWASEDEI 305
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 495 GGFEQAFIASGSEDSQVYIWHRYTGE-----LVLALAGHSGSVNCVSWNPANL--HMLAS 547
G E +G D+ V IW +Y + L L GHS V V+W+P L LAS
Sbjct: 168 GTKESRKFVTGGADNLVKIW-KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226
Query: 548 ASDDRTIRIWGLDQ 561
S DRT IW D
Sbjct: 227 VSQDRTCIIWTQDN 240
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDP-KLVSRYKGHKRARFVIRSCFGGFEQA 500
E+I L K L ++ I ++ +E + KL+ GH+ + + F
Sbjct: 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF-GT 70
Query: 501 FIASGSEDSQVYIWHRYTGEL--VLALAGHSGSVNCVSWNPANL-HMLASASDDRTIRI 556
+AS S D +V IW G + A HS SVN V W P +L AS D + +
Sbjct: 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
I AH++ + + GK LA+ S D++ I+EV+ + L L+GH PV+ V W+
Sbjct: 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWA 64
Query: 327 -PNDHQLL-TCGQEEAIRRWDVNSG 349
P +L +C + + W +G
Sbjct: 65 HPKFGTILASCSYDGKVLIWKEENG 89
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 268 LEAHSDEVWFLQFSHD---GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP--VFT 322
LE HSD V + +S YLAS S+D++ IIW + K L + P ++
Sbjct: 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 261
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVN 347
SWS + + L G + + W N
Sbjct: 262 ASWSLSGNVLALSGGDNKVTLWKEN 286
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 495 GGFEQAFIASGSEDSQVYIWHRYTGE-----LVLALAGHSGSVNCVSWNPANL--HMLAS 547
G E +G D+ V IW +Y + L L GHS V V+W+P L LAS
Sbjct: 166 GTKESRKFVTGGADNLVKIW-KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 548 ASDDRTIRIWGLDQ 561
S DRT IW D
Sbjct: 225 VSQDRTCIIWTQDN 238
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDP-KLVSRYKGHKRARFVIRSCFGGFEQA 500
E+I L K L ++ I ++ +E + KL+ GH+ + + F
Sbjct: 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF-GT 68
Query: 501 FIASGSEDSQVYIWHRYTGEL--VLALAGHSGSVNCVSWNPANL-HMLASASDDRTIRI 556
+AS S D +V IW G + A HS SVN V W P +L AS D + +
Sbjct: 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
I AH++ + + GK LA+ S D++ I+EV+ + L L+GH PV+ V W+
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWA 62
Query: 327 -PNDHQLL-TCGQEEAIRRWDVNSG 349
P +L +C + + W +G
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENG 87
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 268 LEAHSDEVWFLQFSHD---GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP--VFT 322
LE HSD V + +S YLAS S+D++ IIW + K L + P ++
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVN 347
SWS + + L G + + W N
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL--VLALAGHSGSV 532
KL+ GH+ + + F +AS S D +V IW G + A HS SV
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKF-GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASV 102
Query: 533 NCVSWNPANL-HMLASASDDRTIRI 556
N V W P ML AS D + +
Sbjct: 103 NSVQWAPHEYGPMLLVASSDGKVSV 127
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 495 GGFEQAFIASGSEDSQVYIWHRYTGE-----LVLALAGHSGSVNCVSWNPANL--HMLAS 547
G E +G D+ V IW +Y + L L GHS V V+W+P L +AS
Sbjct: 166 GTKESRKFVTGGADNLVKIW-KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224
Query: 548 ASDDRTIRIWGLDQ 561
S DRT IW D
Sbjct: 225 VSQDRTCIIWTQDN 238
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
I AH++ + + GK +A+ S D++ I+EV+ + L L+GH PV+ V W+
Sbjct: 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWA 62
Query: 327 -PNDHQLL-TCGQEEAIRRWDVNSG 349
P +L +C + + W +G
Sbjct: 63 HPKFGTILASCSYDGKVMIWKEENG 87
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L + + + L S D K S D + +W++ +L + GH + S
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISN 193
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383
+ +L T G + +R WD+ G L ++ T + S G+ G + GM ++
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCG 336
LA S+ +Q AII++ +DG++ + +L GH+ + ++SW+P+ +QL+ G
Sbjct: 183 LAVSALEQ-AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG 234
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 520 ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
EL+ H+G V VSWN +L+SA DD +R+W
Sbjct: 295 ELLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLW 331
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 464 EIHLWSIESDPKLVS-RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV 522
++ W++ S+ K++S H ++ F + C F +A + + + G+L
Sbjct: 144 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH 203
Query: 523 LA--LAGHSGSVNCVSWNPAN---LHMLASASDDRTIRIWGLDQ 561
+A L GH + +SW P+ ++A+ D IRI+ + +
Sbjct: 204 VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 247
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCG 336
LA S+ +Q AII++ +DG++ + +L GH+ + ++SW+P+ +QL+ G
Sbjct: 185 LAVSALEQ-AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG 236
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 520 ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
EL+ H+G V VSWN +L+SA DD +R+W
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLW 333
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 464 EIHLWSIESDPKLVS-RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV 522
++ W++ S+ K++S H ++ F + C F +A + + + G+L
Sbjct: 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH 205
Query: 523 LA--LAGHSGSVNCVSWNPAN---LHMLASASDDRTIRIWGLDQ 561
+A L GH + +SW P+ ++A+ D IRI+ + +
Sbjct: 206 VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCG 336
LA S+ +Q AII++ +DG++ + +L GH+ + ++SW+P+ +QL+ G
Sbjct: 185 LAVSALEQ-AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG 236
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 464 EIHLWSIESDPKLVS-RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV 522
++ W++ S+ K++S H ++ F + C F +A + + + G+L
Sbjct: 146 DLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH 205
Query: 523 LA--LAGHSGSVNCVSWNPAN---LHMLASASDDRTIRIWGLDQ 561
+A L GH + +SW P+ ++A+ D IRI+ + +
Sbjct: 206 VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 520 ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
EL+ H+G V VSWN +L+SA DD +R+W
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLW 333
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 495 GGFEQAFIASGSEDSQVYIWHRYTGE-----LVLALAGHSGSVNCVSWNPANL--HMLAS 547
G E +G D+ V IW +Y + L L GHS V V+W+P L AS
Sbjct: 166 GTKESRKFVTGGADNLVKIW-KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXAS 224
Query: 548 ASDDRTIRIWGLDQ 561
S DRT IW D
Sbjct: 225 VSQDRTCIIWTQDN 238
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL--VLALAGHSGSV 532
KL+ GH+ + + F +AS S D +V IW G + A HS SV
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKF-GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASV 102
Query: 533 NCVSWNPANL--HMLASASDDR 552
N V W P +L ++SD +
Sbjct: 103 NSVQWAPHEYGPXLLVASSDGK 124
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
I AH++ + + GK A+ S D++ I+EV+ + L L+GH PV+ V W+
Sbjct: 4 IANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWA 62
Query: 327 -PNDHQLL-TCGQEEAIRRWDVNSG 349
P +L +C + + W +G
Sbjct: 63 HPKFGTILASCSYDGKVXIWKEENG 87
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 271 HSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
HS V L FS H +LAS S+D S + D +S R HR V +WSP +
Sbjct: 256 HSQCVTGLVFSPHSVPFLASLSEDCSLAVL----DSSLSELFRSQAHRDFVRDATWSPLN 311
Query: 330 HQLLT 334
H LLT
Sbjct: 312 HSLLT 316
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 456 LLVNLINQEIHLWSI-ESDPKLVSRYKGHKRARFV-IRSCFGGFEQAFIASGSEDSQVYI 513
+LV + + LW + E++ +VS++ ++ V S QA SGS+D + +
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAV--SGSKDICIKV 153
Query: 514 WHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557
W ++ + H+ V CV+ +P + S S+D I +W
Sbjct: 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|B Chain B, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|C Chain C, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|D Chain D, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
Length = 271
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIA----SGSEDSQVYIWHRYTGELVLALAGHS 529
KL+ +Y +K A+ ++ GG +A +A SG E ++Y + TG+ + AL G++
Sbjct: 109 KLIEKYHLNKNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA 166
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 298 IWEVKEDG-QVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSG 349
IW+ ++ G + S L+G R P+ V PN H + T GQ+ + WDV G
Sbjct: 216 IWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQG 269
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 522 VLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565
+L+L G ++CV +P H++A+ D + IW + Q M
Sbjct: 229 ILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMP 272
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 498 EQAFIASGSEDSQVYIWHRYTGELVLA-LAGHSGSVNCVSWNPANLHMLASASDDRTIRI 556
+Q +A+G +D + IW G + ++ L H + V ++P+N L + S+D ++
Sbjct: 248 QQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWH 307
Query: 557 W 557
W
Sbjct: 308 W 308
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLIS-CGWFLDGGGIF 375
+P+ +W+ + Q+ C + ++ + + + V+E K G ++ W D I
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 68
Query: 376 AGMTDKSICLWDLDGRELESWKGQKT-LRISDMA------------ITDDGKRIISIC 420
TD++ +W L GR +WK LRI+ A G R+ISIC
Sbjct: 69 TCGTDRNAYVWTLKGR---TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346
H L H V V W+P+ ++++TCG + W +
Sbjct: 46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81
>pdb|4E6M|A Chain A, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|B Chain B, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|C Chain C, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|D Chain D, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|E Chain E, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|F Chain F, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|G Chain G, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|H Chain H, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
Length = 423
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 367 WFLDGGGIF-AGMTDKSICLWDLDGREL 393
W + GG +F AGM+ I LWD+ G+ L
Sbjct: 108 WGMGGGNVFYAGMSAIDIALWDIKGKYL 135
>pdb|2GL5|A Chain A, Crystal Structure Of Putative Dehydratase From Salmonella
Thyphimurium
pdb|2GL5|B Chain B, Crystal Structure Of Putative Dehydratase From Salmonella
Thyphimurium
Length = 410
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 367 WFLDGGGIF-AGMTDKSICLWDLDGREL 393
W + GG +F AGM+ I LWD+ G+ L
Sbjct: 87 WGMGGGNVFYAGMSAIDIALWDIKGKYL 114
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLIS-CGWFLDGGGIF 375
+P+ +W+ + Q+ C + ++ + + + V+E K G ++ W D I
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIV 68
Query: 376 AGMTDKSICLWDLDGRELESWKGQKT-LRISDMA------------ITDDGKRIISIC 420
TD++ +W L GR +WK LRI+ A G R+ISIC
Sbjct: 69 TCGTDRNAYVWTLKGR---TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346
H L H V + W+P+ ++++TCG + W +
Sbjct: 46 HELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTL 81
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKH--RLSGHRKP 319
SQ L IL S E F S +++ +++ +Q + ++DG KH S H K
Sbjct: 4 SQVLHILPKPSYEHAF--NSQRTEFVTTTATNQVELY---EQDGN-GWKHARTFSDHDKI 57
Query: 320 VFTVSWSPNDHQLLTCGQE 338
V V W+P ++++TC Q+
Sbjct: 58 VTCVDWAPKSNRIVTCSQD 76
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFA 376
+F +SW + + T G + IR WDV + +C+ + +K +G G G G I +
Sbjct: 256 IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314
Query: 377 GMTDKSICLWDLDGREL 393
D ++ ++L E+
Sbjct: 315 LSLDGTLNFYELGHDEV 331
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFA 376
+F +SW + + T G + IR WDV + +C+ + +K +G G G G I +
Sbjct: 256 IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314
Query: 377 GMTDKSICLWDLDGREL 393
D ++ ++L E+
Sbjct: 315 LSLDGTLNFYELGHDEV 331
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
+++AH++ V ++ + G +A+ S+D + I ++G + + R R + + WS
Sbjct: 174 LVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWS 233
Query: 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYE 356
P+ +L +W LHV+E
Sbjct: 234 PDGSKLAVVSD-----KW------TLHVFE 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,338,789
Number of Sequences: 62578
Number of extensions: 720108
Number of successful extensions: 2951
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1714
Number of HSP's gapped (non-prelim): 516
length of query: 581
length of database: 14,973,337
effective HSP length: 104
effective length of query: 477
effective length of database: 8,465,225
effective search space: 4037912325
effective search space used: 4037912325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)